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Sample records for potential reservoir hosts

  1. Internal structure of fault zones in geothermal reservoirs: Examples from palaeogeothermal fields and potential host rocks

    NASA Astrophysics Data System (ADS)

    Leonie Philipp, Sonja; Reyer, Dorothea; Meier, Silke; Bauer, Johanna F.; Afşar, Filiz

    2014-05-01

    Fault zones commonly have great effects on fluid transport in geothermal reservoirs. During fault slip all the pores and small fractures that meet with the slip plane become interconnected so that the inner part of the fault, the fault core, consisting of breccia or gouge, may suddenly develop a very high permeability. This is evidenced, for example by networks of mineral veins in deeply eroded fault zones in palaeogeothermal fields. Inactive faults, however, may have low permeabilities and even act as flow barriers. In natural and man-made geothermal reservoirs, the orientation of fault zones in relation to the current stress field and their internal structure needs be known as accurately as possible. One reason is that the activity of the fault zone depends on its angle to the principal stress directions. Another reason is that the outer part of a fault zone, the damage zone, comprises numerous fractures of various sizes. Here we present field examples of faults, and associated joints and mineral veins, in palaeogeothermal fields, and potential host rocks for man-made geothermal reservoirs, respectively. We studied several localities of different stratigraphies, lithologies and tectonic settings: (1) 58 fault zones in 22 outcrops from Upper Carboniferous to Upper Cretaceous in the Northwest German Basin (siliciclastic, carbonate and volcanic rocks); (2) 16 fault zones in 9 outcrops in Lower Permian to Middle Triassic (mainly sandstone, limestone and granite) in the Upper Rhine Graben; and (3) 74 fault zones in two coastal sections of Upper Triassic and Lower Jurassic age (mudstones and limestone-marl alternations) in the Bristol Channel Basin, UK. (1) and (2) are outcrop analogues of geothermal reservoir horizons, (3) represent palaeogeothermal fields with mineral veins. The field studies in the Northwest German Basin (1) show pronounced differences between normal-fault zones in carbonate and clastic rocks. In carbonate rocks clear damage zones occur that are

  2. Mycobacterium bovis: characteristics of wildlife reservoir hosts.

    PubMed

    Palmer, M V

    2013-11-01

    Mycobacterium bovis is the cause of tuberculosis in animals and sometimes humans. Many developed nations have long-standing programmes to eradicate tuberculosis in livestock, principally cattle. As disease prevalence in cattle decreases these efforts are sometimes impeded by passage of M. bovis from wildlife to cattle. In epidemiological terms, disease can persist in some wildlife species, creating disease reservoirs, if the basic reproduction rate (R0) and critical community size (CCS) thresholds are achieved. Recognized wildlife reservoir hosts of M. bovis include the brushtail possum (Trichosurus vulpecula) in New Zealand, European badger (Meles meles) in Great Britain and Ireland, African buffalo (Syncerus caffer) in South Africa, wild boar (Sus scrofa) in the Iberian Peninsula and white-tailed deer (Odocoileus virginianus) in Michigan, USA. The epidemiological concepts of R0 and CCS are related to more tangible disease/pathogen characteristics such as prevalence, pathogen-induced pathology, host behaviour and ecology. An understanding of both epidemiological and disease/pathogen characteristics is necessary to identify wildlife reservoirs of M. bovis. In some cases, there is a single wildlife reservoir host involved in transmission of M. bovis to cattle. Complexity increases, however, in multihost systems where multiple potential reservoir hosts exist. Bovine tuberculosis eradication efforts require elimination of M. bovis transmission between wildlife reservoirs and cattle. For successful eradication identification of true wildlife reservoirs is critical, as disease control efforts are most effective when directed towards true reservoirs. PMID:24171844

  3. Red fox (Vulpes vulpes) as a potential reservoir host of cardiorespiratory parasites in Bosnia and Herzegovina.

    PubMed

    Hodžić, Adnan; Alić, Amer; Klebić, Ismar; Kadrić, Mirsad; Brianti, Emanuele; Duscher, Georg Gerhard

    2016-06-15

    Red fox (Vulpes vulpes) is considered as reservoir of different cardiorespiratory parasites of veterinary and medical importance. Since data on cardiorespiratory parasites in foxes in Bosnia and Herzegovina are still lacking, the aims of the present study were to (i) investigate the prevalence and geographical distribution of these parasites, (ii) determine genetic diversity of detected parasite species, and (iii) to estimate the role of foxes in the transmission cycle to companion animals and humans. Four species, morphologically and molecularly identified as Eucoleus boehmi (64.6%; 51/79), Eucoleus aerophilus (69.7%; 154/221), Crenosoma vulpis (45.7%; 101/221) and Linguatula serrata (1.3%; 1/79) were retrieved from nasal cavity and lungs in 184 (83.3%) animals. The occurrence of heartworms, Angiostrongylus vasorum and Dirofilaria immitis was not detected by necropsy or PCR. Furthermore, three distinct haplotypes of E. aerophilus (I, III, XV) and two of C. vulpis (I, II) previously reported in pet animals and wild carnivores were confirmed in this study. A new haplotype of C. vulpis (designated as haplotype V) was also identified based on 12S rRNA gene for the first time. The present study indicates a high prevalence and wide distribution of nasal and lung nematodes in fox population in Bosnia and Herzegovina, and supports the existence of transmission patterns between wildlife and pet animals. PMID:27198779

  4. Laboratory Investigations of African Pouched Rats (Cricetomys gambianus) as a Potential Reservoir Host Species for Monkeypox Virus

    PubMed Central

    Hutson, Christina L.; Nakazawa, Yoshinori J.; Self, Joshua; Olson, Victoria A.; Regnery, Russell L.; Braden, Zachary; Weiss, Sonja; Malekani, Jean; Jackson, Eddie; Tate, Mallory; Karem, Kevin L.; Rocke, Tonie E.; Osorio, Jorge E.; Damon, Inger K.; Carroll, Darin S.

    2015-01-01

    Abstract Monkeypox is a zoonotic disease endemic to central and western Africa, where it is a major public health concern. Although Monkeypox virus (MPXV) and monkeypox disease in humans have been well characterized, little is known about its natural history, or its maintenance in animal populations of sylvatic reservoir(s). In 2003, several species of rodents imported from Ghana were involved in a monkeypox outbreak in the United States with individuals of three African rodent genera (Cricetomys, Graphiurus, Funisciurus) shown to be infected with MPXV. Here, we examine the course of MPXV infection in Cricetomys gambianus (pouched Gambian rats) and this rodent species’ competence as a host for the virus. We obtained ten Gambian rats from an introduced colony in Grassy Key, Florida and infected eight of these via scarification with a challenge dose of 4X104 plaque forming units (pfu) from either of the two primary clades of MPXV: Congo Basin (C-MPXV: n = 4) or West African (W-MPXV: n = 4); an additional 2 animals served as PBS controls. Viral shedding and the effect of infection on activity and physiological aspects of the animals were measured. MPXV challenged animals had significantly higher core body temperatures, reduced activity and increased weight loss than PBS controls. Viable virus was found in samples taken from animals in both experimental groups (C-MPXV and W-MPXV) between 3 and 27 days post infection (p.i.) (up to 1X108 pfu/ml), with viral DNA found until day 56 p.i. The results from this work show that Cricetomys gambianus (and by inference, probably the closely related species, Cricetomys emini) can be infected with MPXV and shed viable virus particles; thus suggesting that these animals may be involved in the maintenance of MPXV in wildlife mammalian populations. More research is needed to elucidate the epidemiology of MPXV and the role of Gambian rats and other species. PMID:26517724

  5. Laboratory Investigations of African Pouched Rats (Cricetomys gambianus) as a Potential Reservoir Host Species for Monkeypox Virus.

    PubMed

    Hutson, Christina L; Nakazawa, Yoshinori J; Self, Joshua; Olson, Victoria A; Regnery, Russell L; Braden, Zachary; Weiss, Sonja; Malekani, Jean; Jackson, Eddie; Tate, Mallory; Karem, Kevin L; Rocke, Tonie E; Osorio, Jorge E; Damon, Inger K; Carroll, Darin S

    2015-01-01

    Monkeypox is a zoonotic disease endemic to central and western Africa, where it is a major public health concern. Although Monkeypox virus (MPXV) and monkeypox disease in humans have been well characterized, little is known about its natural history, or its maintenance in animal populations of sylvatic reservoir(s). In 2003, several species of rodents imported from Ghana were involved in a monkeypox outbreak in the United States with individuals of three African rodent genera (Cricetomys, Graphiurus, Funisciurus) shown to be infected with MPXV. Here, we examine the course of MPXV infection in Cricetomys gambianus (pouched Gambian rats) and this rodent species' competence as a host for the virus. We obtained ten Gambian rats from an introduced colony in Grassy Key, Florida and infected eight of these via scarification with a challenge dose of 4X104 plaque forming units (pfu) from either of the two primary clades of MPXV: Congo Basin (C-MPXV: n = 4) or West African (W-MPXV: n = 4); an additional 2 animals served as PBS controls. Viral shedding and the effect of infection on activity and physiological aspects of the animals were measured. MPXV challenged animals had significantly higher core body temperatures, reduced activity and increased weight loss than PBS controls. Viable virus was found in samples taken from animals in both experimental groups (C-MPXV and W-MPXV) between 3 and 27 days post infection (p.i.) (up to 1X108 pfu/ml), with viral DNA found until day 56 p.i. The results from this work show that Cricetomys gambianus (and by inference, probably the closely related species, Cricetomys emini) can be infected with MPXV and shed viable virus particles; thus suggesting that these animals may be involved in the maintenance of MPXV in wildlife mammalian populations. More research is needed to elucidate the epidemiology of MPXV and the role of Gambian rats and other species. PMID:26517724

  6. Didelphis marsupialis (common opossum): a potential reservoir host for zoonotic leishmaniasis in the metropolitan region of Belo Horizonte (Minas Gerais, Brazil).

    PubMed

    Schallig, Henk D F H; da Silva, Eduardo S; van der Meide, Wendy F; Schoone, Gerard J; Gontijo, Celia M F

    2007-01-01

    Identification of the zoonotic reservoir is important for leishmaniasis control program. A number of (wild) animal species may serve as reservoir hosts, including the opossum Didelphis marsupialis. A survey carried out in Didelphis specimens (n = 111) from the metropolitan region of Belo Horizonte, an important focus of human leishmaniasis in Brazil, is reported. All animals were serologically tested with indirect fluorescence antibody test (IFAT) and direct agglutination tests (DAT) based on L. (L.) donovani or L. (V.) braziliensis antigen. A sub-population (n = 20) was analyzed with polymerase chain reaction (PCR) for the presence of Leishmania-specific DNA. For species identification, PCR-positive samples were subjected to restriction enzyme fragment polymorphism (RFLP) analysis. Depending on the sero-diagnostic test employed, the sero-prevalence varied between 8.1% (9/111 animals positive with DAT test based on L. braziliensis antigen) and 21.6% (24/111 animals positive with IFAT). Five out of 20 samples analyzed with PCR tested positive for the presence of Leishmania-specific DNA. RFLP analysis revealed that two samples contained L. braziliensis complex DNA, one contained L. donovani complex DNA, and two samples could not be typed with the methodology used. These data suggest a potential role for the opossum as a reservoir host for zoonotic leishmaniasis in the region. PMID:17767408

  7. Laboratory investigations of African Pouched Rats (Cricetomys gambianus) as a potential reservoir host species for Monkeypox Virus

    USGS Publications Warehouse

    Hutson, Christina L.; Nakazawa, Yoshinori J.; Self, Joshua; Olson, Victoria A.; Regnery, Russell L.; Braden, Zachary; Weiss, Sonja; Malekani, Jean; Jackson, Eddie; Tate, Mallory; Karem, Kevin L.; Rocke, Tonie E.; Osorio, Jorge E.; Damon, Inger K.; Carroll, Darin S.

    2015-01-01

    Monkeypox is a zoonotic disease endemic to central and western Africa, where it is a major public health concern. Although Monkeypox virus (MPXV) and monkeypox disease in humans have been well characterized, little is known about its natural history, or its maintenance in animal populations of sylvatic reservoir(s). In 2003, several species of rodents imported from Ghana were involved in a monkeypox outbreak in the United States with individuals of three African rodent genera (Cricetomys, Graphiurus, Funisciurus) shown to be infected with MPXV. Here, we examine the course of MPXV infection in Cricetomys gambianus (pouched Gambian rats) and this rodent species’ competence as a host for the virus. We obtained ten Gambian rats from an introduced colony in Grassy Key, Florida and infected eight of these via scarification with a challenge dose of 4X104 plaque forming units (pfu) from either of the two primary clades of MPXV: Congo Basin (C-MPXV: n = 4) or West African (W-MPXV: n = 4); an additional 2 animals served as PBS controls. Viral shedding and the effect of infection on activity and physiological aspects of the animals were measured. MPXV challenged animals had significantly higher core body temperatures, reduced activity and increased weight loss than PBS controls. Viable virus was found in samples taken from animals in both experimental groups (C-MPXV and W-MPXV) between 3 and 27 days post infection (p.i.) (up to 1X108pfu/ml), with viral DNA found until day 56 p.i. The results from this work show that Cricetomys gambianus (and by inference, probably the closely related species, Cricetomys emini) can be infected with MPXV and shed viable virus particles; thus suggesting that these animals may be involved in the maintenance of MPXV in wildlife mammalian populations. More research is needed to elucidate the epidemiology of MPXV and the role of Gambian rats and other species.

  8. Potential Mammalian Filovirus Reservoirs

    PubMed Central

    Carroll, Darin S.; Mills, James N.; Johnson, Karl M.

    2004-01-01

    Ebola and Marburg viruses are maintained in unknown reservoir species; spillover into human populations results in occasional human cases or epidemics. We attempted to narrow the list of possibilities regarding the identity of those reservoir species. We made a series of explicit assumptions about the reservoir: it is a mammal; it supports persistent, largely asymptomatic filovirus infections; its range subsumes that of its associated filovirus; it has coevolved with the virus; it is of small body size; and it is not a species that is commensal with humans. Under these assumptions, we developed priority lists of mammal clades that coincide distributionally with filovirus outbreak distributions and compared these lists with those mammal taxa that have been tested for filovirus infection in previous epidemiologic studies. Studying the remainder of these taxa may be a fruitful avenue for pursuing the identity of natural reservoirs of filoviruses. PMID:15663841

  9. Reservoir hosts of Leptospira inadai in India.

    PubMed

    Gangadhar, N L; Rajasekhar, M; Smythe, L D; Norris, M A; Symonds, M L; Dohnt, M F

    2000-12-01

    Isolation of Leptospira from the kidneys of Rattus rattus wroughtoni hinton, Rattus rattus rufescens, Bandicota bengalensis and Bandicota indica was attempted in Bangalore in southern India. In total, 296 spirochaetes were isolated from 1,348 kidney cultures (an isolation rate of 22%). A batch of fifty-six isolates from India was identified, based on serological and polymerase chain reaction analysis, of which twenty-three isolates were identified as L. inadai by the World Health Organization/Food and Agriculture Organization Collaborating Centre for Reference and Research on Leptospirosis, in Brisbane. This is the first record of isolation of L. inadai from rodents. The preponderance of L. inadai in four different species of rodents suggests that these animals could be the natural reservoir hosts of L. inadai, and raises a critical question as to the likely impact of this species of Leptospira on the renal carrier status of other Leptospira pathogenic to humans and animals in this part of India. Virulence studies conducted at the University of Trieste in Italy, revealed that isolates of L. inadai from India were moderately or totally serum resistant when subjected to a serum killing test. To establish the possible seroprevalence of this species in the population, the inclusion of L. inadai in the battery of leptospiral antigens used for sero-epidemiological studies is recommended. PMID:11107622

  10. Hantavirus reservoir hosts associated with peridomestic habitats in Argentina.

    PubMed Central

    Calderón, G.; Pini, N.; Bolpe, J.; Levis, S.; Mills, J.; Segura, E.; Guthmann, N.; Cantoni, G.; Becker, J.; Fonollat, A.; Ripoll, C.; Bortman, M.; Benedetti, R.; Enria, D.

    1999-01-01

    Five species of sigmodontine rodents have been identified in Argentina as the putative reservoirs of six circulating hantavirus genotypes. Two species of Oligoryzomys are associated with the genotypes causing hantavirus pulmonary syndrome, Oligoryzomys flavescens for Lechiguanas and O. longicaudatus for Andes and Oran genotypes. Reports of human cases of hantavirus pulmonary syndrome prompted rodent trapping (2,299 rodents of 32 species during 27,780 trap nights) at potential exposure sites in three disease-endemic areas. Antibody reactive to Sin Nombre virus was found in six species, including the known hantavirus reservoir species. Risk for peridomestic exposure to host species that carry recognized human pathogens was high in all three major disease-endemic areas. PMID:10603213

  11. Reservoir Host Immune Responses to Emerging Zoonotic Viruses

    PubMed Central

    Mandl, Judith N.; Ahmed, Rafi; Barreiro, Luis B.; Daszak, Peter; Epstein, Jonathan H.; Virgin, Herbert W.; Feinberg, Mark B.

    2015-01-01

    Zoonotic viruses, such as HIV, Ebola virus, coronaviruses, influenza A viruses, hantaviruses, or henipaviruses, can result in profound pathology in humans. In contrast, populations of the reservoir hosts of zoonotic pathogens often appear to tolerate these infections with little evidence of disease. Why are viruses more dangerous in one species than another? Immunological studies investigating quantitative and qualitative differences in the host-virus equilibrium in animal reservoirs will be key to answering this question, informing new approaches for treating and preventing zoonotic diseases. Integrating an understanding of host immune responses with epidemiological, ecological, and evolutionary insights into viral emergence will shed light on mechanisms that minimize fitness costs associated with viral infection, facilitate transmission to other hosts, and underlie the association of specific reservoir hosts with multiple emerging viruses. Reservoir host studies provide a rich opportunity for elucidating fundamental immunological processes and their underlying genetic basis, in the context of distinct physiological and metabolic constraints that contribute to host resistance and disease tolerance. PMID:25533784

  12. Does reservoir host mortality enhance transmission of West Nile virus?

    PubMed Central

    Foppa, Ivo M; Spielman, Andrew

    2007-01-01

    Background Since its 1999 emergence in New York City, West Nile virus (WNV) has become the most important and widespread cause of mosquito-transmitted disease in North America. Its sweeping spread from the Atlantic to the Pacific coast was accompanied by widespread mortality among wild birds, especially corvids. Only sporadic avian mortality had previously been associated with this infection in the Old World. Here, we examine the possibility that reservoir host mortality may intensify transmission, both by concentrating vector mosquitoes on remaining hosts and by preventing the accumulation of "herd immunity". Results Inspection of the Ross-Macdonald expression of the basic reproductive number (R0) suggests that this quantity may increase with reservoir host mortality. Computer simulation confirms this finding and indicates that the level of virulence is positively associated with the numbers of infectious mosquitoes by the end of the epizootic. The presence of reservoir incompetent hosts in even moderate numbers largely eliminated the transmission-enhancing effect of host mortality. Local host die-off may prevent mosquitoes to "waste" infectious blood meals on immune host and may thus facilitate perpetuation and spread of transmission. Conclusion Under certain conditions, host mortality may enhance transmission of WNV and similarly maintained arboviruses and thus facilitate their emergence and spread. The validity of the assumptions upon which this argument is built need to be empirically examined. PMID:17498307

  13. Potential methane reservoirs beneath Antarctica.

    PubMed

    Wadham, J L; Arndt, S; Tulaczyk, S; Stibal, M; Tranter, M; Telling, J; Lis, G P; Lawson, E; Ridgwell, A; Dubnick, A; Sharp, M J; Anesio, A M; Butler, C E H

    2012-08-30

    Once thought to be devoid of life, the ice-covered parts of Antarctica are now known to be a reservoir of metabolically active microbial cells and organic carbon. The potential for methanogenic archaea to support the degradation of organic carbon to methane beneath the ice, however, has not yet been evaluated. Large sedimentary basins containing marine sequences up to 14 kilometres thick and an estimated 21,000 petagrams (1 Pg equals 10(15) g) of organic carbon are buried beneath the Antarctic Ice Sheet. No data exist for rates of methanogenesis in sub-Antarctic marine sediments. Here we present experimental data from other subglacial environments that demonstrate the potential for overridden organic matter beneath glacial systems to produce methane. We also numerically simulate the accumulation of methane in Antarctic sedimentary basins using an established one-dimensional hydrate model and show that pressure/temperature conditions favour methane hydrate formation down to sediment depths of about 300 metres in West Antarctica and 700 metres in East Antarctica. Our results demonstrate the potential for methane hydrate accumulation in Antarctic sedimentary basins, where the total inventory depends on rates of organic carbon degradation and conditions at the ice-sheet bed. We calculate that the sub-Antarctic hydrate inventory could be of the same order of magnitude as that of recent estimates made for Arctic permafrost. Our findings suggest that the Antarctic Ice Sheet may be a neglected but important component of the global methane budget, with the potential to act as a positive feedback on climate warming during ice-sheet wastage. PMID:22932387

  14. Reservoir Competence of Wildlife Host Species for Babesia microti

    PubMed Central

    Tibbetts, Michael; Strauss, Mia; Ostfeld, Richard S.; Keesing, Felicia

    2012-01-01

    Human babesiosis is an increasing health concern in the northeastern United States, where the causal agent, Babesia microti, is spread through the bite of infected Ixodes scapularis ticks. We sampled 10 mammal and 4 bird species within a vertebrate host community in southeastern New York to quantify reservoir competence (mean percentage of ticks infected by an individual host) using real-time PCR. We found reservoir competence levels >17% in white-footed mice (Peromyscus leucopus), raccoons (Procyon lotor), short-tailed shrews (Blarina brevicauda), and eastern chipmunks (Tamias striatus), and <6% but >0% in all other species, including all 4 bird species. Data on the relative contributions of multiple host species to tick infection with B. microti and level of genetic differentiation between B. microti strains transmitted by different hosts will help advance understanding of the spread of human babesiosis. PMID:23171673

  15. Reservoir competence of wildlife host species for Babesia microti.

    PubMed

    Hersh, Michelle H; Tibbetts, Michael; Strauss, Mia; Ostfeld, Richard S; Keesing, Felicia

    2012-12-01

    Human babesiosis is an increasing health concern in the northeastern United States, where the causal agent, Babesia microti, is spread through the bite of infected Ixodes scapularis ticks. We sampled 10 mammal and 4 bird species within a vertebrate host community in southeastern New York to quantify reservoir competence (mean percentage of ticks infected by an individual host) using real-time PCR. We found reservoir competence levels >17% in white-footed mice (Peromyscus leucopus), raccoons (Procyon lotor), short-tailed shrews (Blarina brevicauda), and eastern chipmunks (Tamias striatus), and <6% but >0% in all other species, including all 4 bird species. Data on the relative contributions of multiple host species to tick infection with B. microti and level of genetic differentiation between B. microti strains transmitted by different hosts will help advance understanding of the spread of human babesiosis. PMID:23171673

  16. Bats: Important Reservoir Hosts of Emerging Viruses

    PubMed Central

    Calisher, Charles H.; Childs, James E.; Field, Hume E.; Holmes, Kathryn V.; Schountz, Tony

    2006-01-01

    Bats (order Chiroptera, suborders Megachiroptera [“flying foxes”] and Microchiroptera) are abundant, diverse, and geographically widespread. These mammals provide us with resources, but their importance is minimized and many of their populations and species are at risk, even threatened or endangered. Some of their characteristics (food choices, colonial or solitary nature, population structure, ability to fly, seasonal migration and daily movement patterns, torpor and hibernation, life span, roosting behaviors, ability to echolocate, virus susceptibility) make them exquisitely suitable hosts of viruses and other disease agents. Bats of certain species are well recognized as being capable of transmitting rabies virus, but recent observations of outbreaks and epidemics of newly recognized human and livestock diseases caused by viruses transmitted by various megachiropteran and microchiropteran bats have drawn attention anew to these remarkable mammals. This paper summarizes information regarding chiropteran characteristics and information regarding 66 viruses that have been isolated from bats. From these summaries, it is clear that we do not know enough about bat biology; we are doing too little in terms of bat conservation; and there remain a multitude of questions regarding the role of bats in disease emergence. PMID:16847084

  17. The consequences of reservoir host eradication on disease epidemiology in animal communities.

    PubMed

    Al-Shorbaji, Farah; Roche, Benjamin; Gozlan, Rodolphe; Britton, Robert; Andreou, Demetra

    2016-01-01

    Non-native species have often been linked with introduction of novel pathogens that spill over into native communities, and the amplification of the prevalence of native parasites. In the case of introduced generalist pathogens, their disease epidemiology in the extant communities remains poorly understood. Here, Sphaerothecum destruens, a generalist fungal-like fish pathogen with bi-modal transmission (direct and environmental) was used to characterise the biological drivers responsible for disease emergence in temperate fish communities. A range of biotic factors relating to both the pathogen and the surrounding host communities were used in a novel susceptible-exposed-infectious-recovered (SEIR) model to test how these factors affected disease epidemiology. These included: (i) pathogen prevalence in an introduced reservoir host (Pseudorasbora parva); (ii) the impact of reservoir host eradication and its timing and (iii) the density of potential hosts in surrounding communities and their connectedness. These were modelled across 23 combinations and indicated that the spill-over of pathogen propagules via environmental transmission resulted in rapid establishment in adjacent fish communities (<1 year). Although disease dynamics were initially driven by environmental transmission in these communities, once sufficient numbers of native hosts were infected, the disease dynamics were driven by intra-species transmission. Subsequent eradication of the introduced host, irrespective of its timing (after one, two or three years), had limited impact on the long-term disease dynamics among local fish communities. These outputs reinforced the importance of rapid detection and eradication of non-native species, in particular when such species are identified as healthy reservoirs of a generalist pathogen. PMID:27165562

  18. The consequences of reservoir host eradication on disease epidemiology in animal communities

    PubMed Central

    Al-Shorbaji, Farah; Roche, Benjamin; Gozlan, Rodolphe; Britton, Robert; Andreou, Demetra

    2016-01-01

    Non-native species have often been linked with introduction of novel pathogens that spill over into native communities, and the amplification of the prevalence of native parasites. In the case of introduced generalist pathogens, their disease epidemiology in the extant communities remains poorly understood. Here, Sphaerothecum destruens, a generalist fungal-like fish pathogen with bi-modal transmission (direct and environmental) was used to characterise the biological drivers responsible for disease emergence in temperate fish communities. A range of biotic factors relating to both the pathogen and the surrounding host communities were used in a novel susceptible-exposed-infectious-recovered (SEIR) model to test how these factors affected disease epidemiology. These included: (i) pathogen prevalence in an introduced reservoir host (Pseudorasbora parva); (ii) the impact of reservoir host eradication and its timing and (iii) the density of potential hosts in surrounding communities and their connectedness. These were modelled across 23 combinations and indicated that the spill-over of pathogen propagules via environmental transmission resulted in rapid establishment in adjacent fish communities (<1 year). Although disease dynamics were initially driven by environmental transmission in these communities, once sufficient numbers of native hosts were infected, the disease dynamics were driven by intra-species transmission. Subsequent eradication of the introduced host, irrespective of its timing (after one, two or three years), had limited impact on the long-term disease dynamics among local fish communities. These outputs reinforced the importance of rapid detection and eradication of non-native species, in particular when such species are identified as healthy reservoirs of a generalist pathogen. PMID:27165562

  19. Ecological Niche Modeling of main reservoir hosts of zoonotic cutaneous leishmaniasis in Iran.

    PubMed

    Gholamrezaei, Mostafa; Mohebali, Mehdi; Hanafi-Bojd, Ahmad Ali; Sedaghat, Mohammad Mehdi; Shirzadi, Mohammad Reza

    2016-08-01

    Zoonotic cutaneous leishmaniasis (ZCL), caused by Leishmania major, is a common zoonotic vector-borne disease in Iran. Close contact with infected reservoir hosts increases the probability of transmission of Leishmania parasite infections to susceptible humans. Four gerbil species (Rodentia: Gerbillidae) serve as the main reservoir hosts for ZCL in different endemic foci of Iran. These species include Rhombomys opimus, Meriones libycus, Meriones hurrianae and Tatera indica; while notable infection has been reported in Nesokia indica as well. The purpose of this study is to model the distribution of these reservoirs to identify the risk areas of ZCL. A data bank was developed including all published data during the period of 1970-2015. Maximum entropy model was used to find the most appropriate ecological niches for each species. The areas under curve obtained were 0.961, 0.927, 0.922, 0.997 and 0.899, instead of 1, for training test in R. opimus, M. libycus, T. indica, M. hurrianae and N. indica, respectively. The environmental variable with the highest gain when used in isolation was slope for R. opimus and N. indica, annual mean temperature for M. libycus, and seasonal precipitation for T. indica and M. hurrianae. Summation of presence probabilities for three main species, i.e., R. opimus, M. libycus and T. indica revealed favorable ecological niches in wide areas of 16 provinces. This is the first study to predict the distribution of ZCL reservoir hosts in Iran. Climatology and topography variables had high contributions toward the prediction of potential distribution of the main reservoir species; therefore, as climate changes, the models should be updated periodically with novel data, and the results should be used in disease-monitoring programs. PMID:27150212

  20. GLOBAL PATTERNS OF LEPTOSPIRA PREVALENCE IN VERTEBRATE RESERVOIR HOSTS.

    PubMed

    Andersen-Ranberg, Emilie U; Pipper, Christian; Jensen, Per M

    2016-07-01

    Leptospirosis is a widespread emerging bacterial zoonosis. As the transmission is believed to be predominantly waterborne, human incidence is expected to increase in conjunction with global climate change and associated extreme weather events. Providing more accurate predictions of human leptospirosis requires more detailed information on animal reservoirs that are the source of human infection. We evaluated the prevalence of Leptospira in vertebrates worldwide and its association with taxonomy, geographic region, host biology, ambient temperature, and precipitation patterns. A multivariate regression analysis with a meta-analysis-like approach was used to analyze compiled data extracted from 300 Leptospira-related peer reviewed papers. A fairly uniform Leptospira infection prevalence of about 15% was found in the majority of mammalian families. Higher prevalence was frequently associated with species occupying urban habitats, and this may explain why climatic factors were not significantly correlated with prevalence as consistently as expected. Across different approaches of the multiple regression analyses, the variables most frequently correlated with Leptospira infection prevalence were the host's ability to swim, minimum ambient temperature, and methodologic quality of the study. Prevalence in carnivores was not associated with any climatic variable, and the importance of environmental risk factors were indicated to be of lesser consequence in nonhuman mammals. The dataset is made available for further analysis. PMID:27187029

  1. Environmental influences on virus-host interactions in an Australian subtropical reservoir.

    PubMed

    Säwström, Christin; Pollard, Peter

    2012-02-01

    Viral and prokaryotic interactions in freshwaters have been investigated worldwide but there are few temporal studies in the tropics and none in the sub-tropics. In this 10-month study, we examined temporal changes in virus-host interactions and viral life cycles (lytic versus lysogenic) in relation to the prevailing environmental conditions in a subtropical water reservoir (Wivenhoe) in southeast Queensland, Australia. Heterotrophic prokaryotes and picocyanobacteria were positively correlated with concentrations of viruses throughout the study, indicating the presence of both bacteriophages and cyanophages in the reservoir. The percentage of heterotrophic prokaryotes and picocyanobacteria containing intracellular viruses (FVIC) ranged between 0.2% and 2.4% and did not vary significantly over the 10-month study, whereas lysogenic heterotrophic prokaryotes were only detected in the drier months of June and July. Spearman rank correlation analysis showed that the oxidative-reduction potential (ORP) of the water reservoir influenced the concentrations of viruses, heterotrophic prokaryotes and picocyanobacteria significantly, with low ORP offering a favourable environment for these components. There was a negative relationship between FVIC and rainfall suggesting the associated run-off altered virus-host interactions. Overall, our study provides novel information and inferences on how virus-host interactions in subtropical freshwaters might respond to changes in precipitation predicted to occur with global climate change. PMID:23757232

  2. Detection of urinary biomarkers in reservoir hosts of Leptospirosis by capillary electrophoresis mass spectrometry

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Pathogenic leptospires colonize the renal tubules of reservoir hosts of infection and are excreted via urine into the environment. Reservoir hosts include a wide range of domestic and wild animal species and include cattle, dogs and rats which can persistently excrete large numbers of pathogenic lep...

  3. Transmission or Within-Host Dynamics Driving Pulses of Zoonotic Viruses in Reservoir-Host Populations.

    PubMed

    Plowright, Raina K; Peel, Alison J; Streicker, Daniel G; Gilbert, Amy T; McCallum, Hamish; Wood, James; Baker, Michelle L; Restif, Olivier

    2016-08-01

    Progress in combatting zoonoses that emerge from wildlife is often constrained by limited knowledge of the biology of pathogens within reservoir hosts. We focus on the host-pathogen dynamics of four emerging viruses associated with bats: Hendra, Nipah, Ebola, and Marburg viruses. Spillover of bat infections to humans and domestic animals often coincides with pulses of viral excretion within bat populations, but the mechanisms driving such pulses are unclear. Three hypotheses dominate current research on these emerging bat infections. First, pulses of viral excretion could reflect seasonal epidemic cycles driven by natural variations in population densities and contact rates among hosts. If lifelong immunity follows recovery, viruses may disappear locally but persist globally through migration; in either case, new outbreaks occur once births replenish the susceptible pool. Second, epidemic cycles could be the result of waning immunity within bats, allowing local circulation of viruses through oscillating herd immunity. Third, pulses could be generated by episodic shedding from persistently infected bats through a combination of physiological and ecological factors. The three scenarios can yield similar patterns in epidemiological surveys, but strategies to predict or manage spillover risk resulting from each scenario will be different. We outline an agenda for research on viruses emerging from bats that would allow for differentiation among the scenarios and inform development of evidence-based interventions to limit threats to human and animal health. These concepts and methods are applicable to a wide range of pathogens that affect humans, domestic animals, and wildlife. PMID:27489944

  4. More Novel Hantaviruses and Diversifying Reservoir Hosts — Time for Development of Reservoir-Derived Cell Culture Models?

    PubMed Central

    Eckerle, Isabella; Lenk, Matthias; Ulrich, Rainer G.

    2014-01-01

    Due to novel, improved and high-throughput detection methods, there is a plethora of newly identified viruses within the genus Hantavirus. Furthermore, reservoir host species are increasingly recognized besides representatives of the order Rodentia, now including members of the mammalian orders Soricomorpha/Eulipotyphla and Chiroptera. Despite the great interest created by emerging zoonotic viruses, there is still a gross lack of in vitro models, which reflect the exclusive host adaptation of most zoonotic viruses. The usually narrow host range and genetic diversity of hantaviruses make them an exciting candidate for studying virus-host interactions on a cellular level. To do so, well-characterized reservoir cell lines covering a wide range of bat, insectivore and rodent species are essential. Most currently available cell culture models display a heterologous virus-host relationship and are therefore only of limited value. Here, we review the recently established approaches to generate reservoir-derived cell culture models for the in vitro study of virus-host interactions. These successfully used model systems almost exclusively originate from bats and bat-borne viruses other than hantaviruses. Therefore we propose a parallel approach for research on rodent- and insectivore-borne hantaviruses, taking the generation of novel rodent and insectivore cell lines from wildlife species into account. These cell lines would be also valuable for studies on further rodent-borne viruses, such as orthopox- and arenaviruses. PMID:24576845

  5. Western gray squirrel (Rodentia: Sciuridae): a primary reservoir host of Borrelia burgdorferi in Californian oak woodlands?

    PubMed

    Lane, Robert S; Mun, Jeomhee; Eisen, Rebecca J; Eisen, Lars

    2005-05-01

    In California, dense woodlands have been recognized as important biotopes where humans are exposed to the nymphal stage of the western blacklegged tick, Ixodes pacificus Cooley & Kohls, the primary vector of the Lyme disease spirochete Borrelia burgdorferi sensu stricto (s.s.), in the far-western United States. To identify the principal reservoir host(s) of this spirochete, and of closely related spirochetes in the B. burgdorferi sensu lato (s.l.) complex, in dense woodlands in Mendocino County, California, approximately 50 species of birds and mammals, including wood rats and kangaroo rats, were evaluated as potential hosts for vector ticks and borreliae in 2002 and 2003. Although polymerase chain reaction (PCR) and sequencing analyses revealed that many vertebrate species had been exposed to one or more members of the B. burgdorferi s.l. spirochetal complex, only the western gray squirrel, Sciurus griseus, fulfilled the major criteria for a reservoir host of B. burgdorferi s.s. Ear-punch biopsies from eight of 10 squirrels collected from five separate woodlands were PCR-positive for B. burgdorferi s.s., 47% of I. pacificus larvae (n = 64) and 31% of nymphs (n = 49) removed from squirrels contained B. burgdorferi s.l., and the engorgement status of I. pacificus larvae was associated positively with acquisition of spirochetes. Overall, 83 and 100% of the amplicons sequenced from PCR-positive I. pacificus larvae and nymphs, respectively, were identified as B. burgdorferi s.s, Among the five remaining positive I. pacificus larvae, three contained B. bissettii and two had uncharacterized B. burgdorferi s.l. Borrelia burgdorferi s.s. was detected in one of five larvae and zero of two nymphs of the Pacific Coast tick, Dermacentor occidentalis Marx, that likewise had been removed from squirrels. The rickettsial agent of human anaplasmosis, Anaplasma phagocytophilum, was detected in the blood or ear biopsies of two squirrels and in one (1.6%) of 64 I. pacificus larvae and

  6. Antigen variability in Anaplasma phagocytophilum during chronic infection of a reservoir host

    PubMed Central

    Foley, Patrick; Barbet, Anthony; Foley, Janet

    2012-01-01

    Anaplasma phagocytophilum is an obligately intracellular, tick-transmitted, bacterial pathogen of humans and other animals. In order to evade host immunity during the course of infection, A. phagocytophilum utilizes gene conversion to shuffle approximately 100 functional pseudogenes into a single expression cassette of the msp2(p44) gene, which encodes the major surface antigen, major surface protein 2 (Msp2). The role and extent of msp2(p44) recombination in a reservoir host for A. phagocytophilum have not been evaluated. In the current study, we explored patterns of recombination and expression site variability of the msp2(p44) gene in three chronically infected woodrats, a reservoir for the disease in the Western USA. All three woodrats developed persistent infection of at least 6 months duration; two of them maintained active infection for at least 8 months. In total, we detected the emergence of 60 unique msp2(p44) expression site variants with no common temporal patterns of expression site recombination among the three A. phagocytophilum populations. Both the strength of infection (i.e. pathogen load) and the genetic diversity of pseudogenes detected at the msp2(p44) expression site fluctuated periodically during the course of infection. An analysis of the genomic pseudogene exhaustion rate showed that the repertoire of pseudogenes available to the A. phagocytophilum population could in theory become depleted within a year. However, the apparent emergence of variant pseudogenes suggests that the pathogen could potentially evade host immunity indefinitely. Our findings suggest a tightly co-evolved relationship between A. phagocytophilum and woodrats in which the pathogen perpetually evades host immunity yet causes no detectable disease. PMID:22859615

  7. Bats as reservoir hosts of human bacterial pathogen, Bartonella mayotimonensis.

    PubMed

    Veikkolainen, Ville; Vesterinen, Eero J; Lilley, Thomas M; Pulliainen, Arto T

    2014-06-01

    A plethora of pathogenic viruses colonize bats. However, bat bacterial flora and its zoonotic threat remain ill defined. In a study initially conducted as a quantitative metagenomic analysis of the fecal bacterial flora of the Daubenton's bat in Finland, we unexpectedly detected DNA of several hemotrophic and ectoparasite-transmitted bacterial genera, including Bartonella. Bartonella spp. also were either detected or isolated from the peripheral blood of Daubenton's, northern, and whiskered bats and were detected in the ectoparasites of Daubenton's, northern, and Brandt's bats. The blood isolates belong to the Candidatus-status species B. mayotimonensis, a recently identified etiologic agent of endocarditis in humans, and a new Bartonella species (B. naantaliensis sp. nov.). Phylogenetic analysis of bat-colonizing Bartonella spp. throughout the world demonstrates a distinct B. mayotimonensis cluster in the Northern Hemisphere. The findings of this field study highlight bats as potent reservoirs of human bacterial pathogens. PMID:24856523

  8. All ecosystems potentially host electrogenic bacteria.

    PubMed

    Chabert, Nicolas; Amin Ali, Oulfat; Achouak, Wafa

    2015-12-01

    Instead of requiring metal catalysts, MFCs utilize bacteria that oxidize organic matter and either transfer electrons to the anode or take electrons from the cathode. These devices are thus based on a wide microbial diversity that can convert a large array of organic matter components into sustainable and renewable energy. A wide variety of explored environments were found to host electrogenic bacteria, including extreme environments. In the present review, we describe how different ecosystems host electrogenic bacteria, as well as the physicochemical, electrochemical and biological parameters that control the currents from MFCs. We also report how using new molecular techniques allowed characterization of electrochemical biofilms and identification of potentially new electrogenic species. Finally we discuss these findings in the context of future research directions. PMID:26298511

  9. The Lyme Disease Pathogen Has No Effect on the Survival of Its Rodent Reservoir Host

    PubMed Central

    Voordouw, Maarten J.; Lachish, Shelly; Dolan, Marc C.

    2015-01-01

    Zoonotic pathogens that cause devastating morbidity and mortality in humans may be relatively harmless in their natural reservoir hosts. The tick-borne bacterium Borrelia burgdorferi causes Lyme disease in humans but few studies have investigated whether this pathogen reduces the fitness of its reservoir hosts under natural conditions. We analyzed four years of capture-mark-recapture (CMR) data on a population of white-footed mice, Peromyscus leucopus, to test whether B. burgdorferi and its tick vector affect the survival of this important reservoir host. We used a multi-state CMR approach to model mouse survival and mouse infection rates as a function of a variety of ecologically relevant explanatory factors. We found no effect of B. burgdorferi infection or tick burden on the survival of P. leucopus. Our estimates of the probability of infection varied by an order of magnitude (0.051 to 0.535) and were consistent with our understanding of Lyme disease in the Northeastern United States. B. burgdorferi establishes a chronic avirulent infection in their rodent reservoir hosts because this pathogen depends on rodent mobility to achieve transmission to its sedentary tick vector. The estimates of B. burgdorferi infection risk will facilitate future theoretical studies on the epidemiology of Lyme disease. PMID:25688863

  10. Leishmania (L.) mexicana Infected Bats in Mexico: Novel Potential Reservoirs

    PubMed Central

    Berzunza-Cruz, Miriam; Rodríguez-Moreno, Ángel; Gutiérrez-Granados, Gabriel; González-Salazar, Constantino; Stephens, Christopher R.; Hidalgo-Mihart, Mircea; Marina, Carlos F.; Rebollar-Téllez, Eduardo A.; Bailón-Martínez, Dulce; Balcells, Cristina Domingo; Ibarra-Cerdeña, Carlos N.; Sánchez-Cordero, Víctor; Becker, Ingeborg

    2015-01-01

    Leishmania (Leishmania) mexicana causes cutaneous leishmaniasis, an endemic zoonosis affecting a growing number of patients in the southeastern states of Mexico. Some foci are found in shade-grown cocoa and coffee plantations, or near perennial forests that provide rich breeding grounds for the sand fly vectors, but also harbor a variety of bat species that live off the abundant fruits provided by these shade-giving trees. The close proximity between sand flies and bats makes their interaction feasible, yet bats infected with Leishmania (L.) mexicana have not been reported. Here we analyzed 420 bats from six states of Mexico that had reported patients with leishmaniasis. Tissues of bats, including skin, heart, liver and/or spleen were screened by PCR for Leishmania (L.) mexicana DNA. We found that 41 bats (9.77%), belonging to 13 species, showed positive PCR results in various tissues. The infected tissues showed no evidence of macroscopic lesions. Of the infected bats, 12 species were frugivorous, insectivorous or nectarivorous, and only one species was sanguivorous (Desmodus rotundus), and most of them belonged to the family Phyllostomidae. The eco-region where most of the infected bats were caught is the Gulf Coastal Plain of Chiapas and Tabasco. Through experimental infections of two Tadarida brasiliensis bats in captivity, we show that this species can harbor viable, infective Leishmania (L.) mexicana parasites that are capable of infecting BALB/c mice. We conclude that various species of bats belonging to the family Phyllostomidae are possible reservoir hosts for Leishmania (L.) mexicana, if it can be shown that such bats are infective for the sand fly vector. Further studies are needed to determine how these bats become infected, how long the parasite remains viable inside these potential hosts and whether they are infective to sand flies to fully evaluate their impact on disease epidemiology. PMID:25629729

  11. Leishmania (L.) mexicana infected bats in Mexico: novel potential reservoirs.

    PubMed

    Berzunza-Cruz, Miriam; Rodríguez-Moreno, Ángel; Gutiérrez-Granados, Gabriel; González-Salazar, Constantino; Stephens, Christopher R; Hidalgo-Mihart, Mircea; Marina, Carlos F; Rebollar-Téllez, Eduardo A; Bailón-Martínez, Dulce; Balcells, Cristina Domingo; Ibarra-Cerdeña, Carlos N; Sánchez-Cordero, Víctor; Becker, Ingeborg

    2015-01-01

    Leishmania (Leishmania) mexicana causes cutaneous leishmaniasis, an endemic zoonosis affecting a growing number of patients in the southeastern states of Mexico. Some foci are found in shade-grown cocoa and coffee plantations, or near perennial forests that provide rich breeding grounds for the sand fly vectors, but also harbor a variety of bat species that live off the abundant fruits provided by these shade-giving trees. The close proximity between sand flies and bats makes their interaction feasible, yet bats infected with Leishmania (L.) mexicana have not been reported. Here we analyzed 420 bats from six states of Mexico that had reported patients with leishmaniasis. Tissues of bats, including skin, heart, liver and/or spleen were screened by PCR for Leishmania (L.) mexicana DNA. We found that 41 bats (9.77%), belonging to 13 species, showed positive PCR results in various tissues. The infected tissues showed no evidence of macroscopic lesions. Of the infected bats, 12 species were frugivorous, insectivorous or nectarivorous, and only one species was sanguivorous (Desmodus rotundus), and most of them belonged to the family Phyllostomidae. The eco-region where most of the infected bats were caught is the Gulf Coastal Plain of Chiapas and Tabasco. Through experimental infections of two Tadarida brasiliensis bats in captivity, we show that this species can harbor viable, infective Leishmania (L.) mexicana parasites that are capable of infecting BALB/c mice. We conclude that various species of bats belonging to the family Phyllostomidae are possible reservoir hosts for Leishmania (L.) mexicana, if it can be shown that such bats are infective for the sand fly vector. Further studies are needed to determine how these bats become infected, how long the parasite remains viable inside these potential hosts and whether they are infective to sand flies to fully evaluate their impact on disease epidemiology. PMID:25629729

  12. Novel methods for surveying reservoir hosts and vectors of Borrelia burgdorferi in Northern Minnesota

    NASA Astrophysics Data System (ADS)

    Seifert, Veronica Aili

    Lyme disease is the most prevalent tick-borne disease in North America and presents challenges to clinicians, researchers and the public in diagnosis, treatment and prevention. Lyme disease is caused by the spirochete, Borrelia burgdorferi, which is a zoonotic pathogen obligate upon hematophagous arthropod vectors and propagates in small mammal reservoir hosts. Identifying factors governing zoonotic diseases within regions of high-risk provides local health and agricultural agencies with necessary information to formulate public policy and implement treatment protocols to abate the rise and expansion of infectious disease outbreaks. In the United States, the documented primary reservoir host of Lyme disease is the white-footed mouse, Peromyscus leucopus, and the arthropod vector is the deer tick, Ixodes scapularis. Reducing the impact of Lyme disease will need novel methods for identifying both the reservoir host and the tick vector. The reservoir host, Peromyscus leucopus is difficult to distinguish from the virtually identical Peromyscus maniculatus that also is present in Northern Minnesota, a region where Lyme disease is endemic. Collection of the Ixodes tick, the Lyme disease vector, is difficult as this is season dependent and differs from year to year. This study develops new strategies to assess the extent of Borrelia burgdorferi in the local environment of Northern Minnesota. A selective and precise method to identify Peromyscus species was developed. This assay provides a reliable and definitive method to identify the reservoir host, Peromyscus leucopus from a physically identical and sympatric Peromyscus species, Peromyscus maniculatus. A new strategy to collect ticks for measuring the disbursement of Borrelia was employed. Students from local high schools were recruited to collect ticks. This strategy increased the available manpower to cover greater terrain, provided students with valuable experience in research methodology, and highlighted the

  13. Novel materials as potential infrared laser hosts

    NASA Astrophysics Data System (ADS)

    Sarkies, Julian Richard

    The work presented in this thesis has concentrated on an assessment and characterisation of potential laser host media which will only support low phonon or vibrational modes. This is a necessary criterion if systems in which the active ions are lanthanides are to be made to lase in the mid-infrared, as in conventional host media non- radiative processes dominate transitions in this region. Research has concentrated upon two main areas. Firstly a spectroscopic study of lanthanide doped PBr3/AlBr3/SbBr3 was undertaken. A detailed investigation and characterisation of the stable solution formation region was carried out. The doping levels achievable were seen to vary across the lanthanide series from a maximum 0.24mol% for praesodymium to a minimum 0.15mol% for ytterbium. Energies of the characteristic 4 f absorptions of the trivalent lanthanides were measured, along with their oscillator strengths. Judd-Ofelt parameters were found for several rare earths. Stimulated emission cross sections were found to be higher than in conventional glass hosts for certain transitions, such as 6.83 × 10 -20 cm2 for the 4F3/2 --> 4I11/2 transition in the Nd3+ doped liquid. This was verified both experimentally and by the Ladenburg-Fuchtbauer relation when compared to a standard silicate glass. The behaviour, both spectroscopic and physical, of the doped solutions was seen to change dramatically upon heating. Heating the solutions gave rise to higher crystallisation rates, but lower non-radiative relaxation rates. Waveguide and laser experiments were attempted in both bulk and capillary geometries, however material factors such as crystallisation and thermal lensing prevented laser action. Secondly, rare earth doped planar waveguides of zinc sulphide were prepared. A full characterisation of the way in which waveguide loss was affected by factors such as deposition rate, doping level and waveguide masking during evaporation was performed. Waveguide losses as low as 1.5dB/cm at 980nm

  14. Maximum ecological potential of tropical reservoirs and benthic invertebrate communities.

    PubMed

    Molozzi, Joseline; Feio, Maria João; Salas, Fuensanta; Marques, João Carlos; Callisto, Marcos

    2013-08-01

    The Reference Condition Approach (RCA) is now widely adopted as a basis for the evaluation of the ecological quality of water bodies. In accordance with the RCA, the integrity of communities found in a given location should be analyzed according to their deviation from the communities that would be expected in the absence of anthropogenic disturbances. The RCA was used here with the aim of defining the Maximum Ecological Potential (MEP) of tropical reservoirs located in the hydrographical basin of the Paraopeba River in the state of Minas Gerais, Brazil. Among the reservoirs, Serra Azul is used as a water supply and is located in a core area of environmental protection where tourism is not allowed and the native vegetation is conserved. The benthic macroinvertebrate communities at 90 sites located in three reservoirs were analyzed and sampled every 3 months over 2 years. The temporal patterns of the communities in the three reservoirs were analyzed (2nd-STAGE MDS and ANOSIM) and were not significantly related to seasonal fluctuations in temperature and precipitation. Twenty-eight sites belonging to the Serra Azul reservoir were selected to define the MEP of these reservoirs because these sites had the lowest human disturbance levels. The macroinvertebrate taxa present in the selected MEP sites are similar to those of natural lakes and different from the communities of disturbed sites. The biological classification of these sites revealed two groups with distinct macroinvertebrate communities. This distinction was related to climatic variables, bottom substrate type, the presence of gravel/boulders, coarse sand, silt, clay or muck, depth, and the shoreline substrate zone. These two subsets of biological communities and respective environmental conditions can serve as a basis for the future implementation of ecological quality monitoring programs for tropical reservoirs in the study area. This approach can also, however, be implemented in other geographic areas

  15. The Potential for Hosted Payloads at NASA

    NASA Technical Reports Server (NTRS)

    Andraschko, Mark; Antol, Jeffrey; Baize, Rosemary; Horan, Stephen; Neil, Doreen; Rinsland, Pamela; Zaiceva, Rita

    2012-01-01

    The 2010 National Space Policy encourages federal agencies to actively explore the use of inventive, nontraditional arrangements for acquiring commercial space goods and services to meet United States Government requirements, including...hosting government capabilities on commercial spacecraft. NASA's Science Mission Directorate has taken an important step towards this goal by adding an option for hosted payload responses to its recent Announcement of Opportunity (AO) for Earth Venture-2 missions. Since NASA selects a significant portion of its science missions through a competitive process, it is useful to understand the implications that this process has on the feasibility of successfully proposing a commercially hosted payload mission. This paper describes some of the impediments associated with proposing a hosted payload mission to NASA, and offers suggestions on how these impediments might be addressed. Commercially hosted payloads provide a novel way to serve the needs of the science and technology demonstration communities at a fraction of the cost of a traditional Geostationary Earth Orbit (GEO) mission. The commercial communications industry launches over 20 satellites to GEO each year. By exercising this repeatable commercial paradigm of privately financed access to space with proven vendors, NASA can achieve science goals at a significantly lower cost than the current dedicated spacecraft and launch vehicle approach affords. Commercial hosting could open up a new realm of opportunities for NASA science missions to make measurements from GEO. This paper also briefly describes two GEO missions recommended by the National Academies of Science Earth Science Decadal Survey, the Geostationary Coastal and Air Pollution Events (GEO-CAPE) mission and the Precipitation and All-weather Temperature and Humidity (PATH) mission. Hosted payload missions recently selected for implementation by the Office of the Chief Technologist are also discussed. Finally, there are

  16. Improving the potential to produce oil from naturally fractured reservoirs

    SciTech Connect

    Perez, J.M.; Nighswander, J.; Berg, R.R.; Friedman, M.; Gangi, A.F.; Poston, S.W.

    1994-12-31

    A multi-phase effort that involved geological, geophysical, and petroleum engineering studies yielded an improved understanding of naturally fractured reservoirs and potential manners to improve the incidence of oil production from such reservoirs. Maps of fracture traces on bedding planes in the Austin Chalk outcrops showed organized trends of the fracture development and a hierarchical nature within the complete fracture system. Vertical Seismic Profile, VSP data has been used to estimate fracture orientation from shear-wave splitting. Well log responses in Austin Chalk wells have shown to be a reliable indicator of organic maturity. Well logs have also been used to calculate average resistivity of producing zones and to correlate resistivity with oil saturation and therefore with producing potential. Additionally, the use of carbonates water imbibition displacement processes has shown encouraging results of accelerating and increasing oil recovery of oil which do not have appreciable asphaltene contents.

  17. Can streaming potential data improve permeability estimates in EGS reservoirs?

    NASA Astrophysics Data System (ADS)

    Vogt, Christian; Klitzsch, Norbert

    2013-04-01

    We study the capability of streaming potential data to improve the estimation of permeability in fractured geothermal systems. To this end, we simulate a tracer experiment numerically carried out at the Enhanced Geothermal System (EGS) at Soultz-sous-Forêts, France, in 2005. The EGS is located in the Lower Rhine Graben. Here, at approximately 5000 m depth an engineered reservoir was established. The tracer circulation test provides information on hydraulic connectivity between the injection borehole GPK3 and the two production boreholes GPK2 and GPK4. Vogt et al. (2011) performed stochastic inversion approaches to estimate heterogeneous permeability at Soultz in an equivalent porous medium approach and studied the non-uniqueness of the possible pathways in the reservoir. They identified three different possible groups of pathway configurations between GPK2 and GPK3 and corresponding hydraulic properties. Using the Ensemble Kalman Fitler, Vogt et al. (2012) estimated permeability by updating sequentially an ensemble of heterogeneous Monte Carlo reservoir models. Additionally, this approach quantifies the heterogeneously distributed uncertainty. Here, we study whether considering hypothetical streaming potential (SP) data during the stochastic inversion can improve the determination of the hydraulic reservoir properties. In particular, we study whether the three groups are characterized uniquely by their corresponding SP signals along the boreholes and whether the Ensemble Kalman Filter fit could be improved by joint inversion of SP and tracer data. During the actual tracer test, no SP data were recorded. Therefore, this study is based on synthetic data. We find that SP data predominantly yields information on the near field of permeability around the wells. Therefore, SP observations along wells will not help to characterize large-scale reservoir flow paths. However, we investigate whether additional passive SP monitoring from deviated wells around the injection

  18. Over-wintering tadpoles of Mixophyes fasciolatus act as reservoir host for Batrachochytrium dendrobatidis.

    PubMed

    Narayan, Edward J; Graham, Clara; McCallum, Hamish; Hero, Jean-Marc

    2014-01-01

    Batrachochytrium dendrobatidis (Bd), a cutaneous amphibian fungus that causes the lethal disease chytridiomycosis, has been implicated as a cause of many amphibian declines. Bd can tolerate low temperatures with an optimum thermal range from 17-24°C. It has been shown that Bd infection may result in species extinction, avoiding the transmission threshold presented by density dependent transmission theory. Prevalence of Bd during autumn and winter has been shown to be as low as 0% in some species. It is currently unclear how Bd persists in field conditions and what processes result in carry-over between seasons. It has been hypothesised that overwintering tadpoles may host Bd between breeding seasons. The Great Barred Frog (Mixophyes fasciolatus) is a common, stable and widespread species in Queensland, Australia, and is known to carry Bd. Investigation into Bd infection of different life stages of M. fasciolatus during seasonally low prevalence may potentially reveal persistence and carry-over methods between seasons. Metamorphs, juveniles, and adults were swabbed for Bd infection over three months (between March and May, 2011) at 5 sites of varying altitude (66 m-790 m). A total of 93 swabs were analysed using Polymerase Chain Reaction (PCR) real-time analysis. PCR analysis showed 6 positive (1 excluded), 4 equivocal and 83 negative results for infection with Bd. Equivocal results were assumed to be negative using the precautionary principle. The 5 positive results consisted of 4 emerging (Gosner stage 43-45) metamorphs and 1 adult M. fasciolatus. Fisher's exact test on prevalence showed that the prevalence was significantly different between life stages. All positive results were sampled at high altitudes (790 m); however prevalence was not significantly different between altitudes. Infection of emerging metamorphs suggests that individuals were infected as tadpoles. We hypothesise that M. fasciolatus tadpoles carry Bd through seasons. Thus, Mixophyes

  19. Reservoir potential in Lower Devonian strata of Illinois

    SciTech Connect

    Whitaker, S.T. )

    1989-08-01

    Lower Devonian strata have considerable potential for hydrocarbon reserves in the Illinois basin; however, there has not yet been a major exploration effort for Lower Devonian reservoirs in the basin, nor has an adequate model been developed to explain distribution of these reservoirs. Due to the lack of exploration, production from these strata is presently limited to a few fields in south-central and southwestern Illinois. A review of data available at the Illinois State Geological Survey indicates that most Lower Devonian production in Illinois is from dolomitized cherty limestones in the Clear Creek Formation and Grassy Knob Chert. Minor production has also been noted in similar facies in the Bailey Limestone. Reservoir development within these strata is caused by dolomitization of slightly porous limestone beds and occurs in proximity to the beds' subcrop at the sub-Kaskaskia (pre-Middle Devonian) unconformity. The best reservoir development appears to be along paleotopographic highs on the Lower Devonian surface. Traps are most commonly formed where porous dolomitic beds, truncated at the sub-Kaskaskia unconformity are underlain by tight cherty limestones and overlain by tight Middle Devonian carbonates. Traps may also be formed downdip from porosity truncations where trends of porous Lower Devonian strata coincide with structural closures. The geometry and distribution of known reservoirs and traps in Lower Devonian carbonates indicate there may be several productive fairways in the basin. Exploration for and exploitation of these plays will depend on an increased understanding of Lower Devonian strata utilizing exploration models such as the one presented here.

  20. The raccoon (Procyon lotor) as potential rabies reservoir species in Germany: a risk assessment.

    PubMed

    Vos, Adriaan; Ortmann, Steffen; Kretzschmar, Antje S; Köhnemann, Berit; Michler, Frank

    2012-01-01

    Terrestrial wildlife rabies has been successfully eliminated from Germany predominantly as a result of the distribution of oral rabies vaccine baits. In case that wildlife rabies would re-emerge among its known reservoir species in Germany, swift action based on previous experiences could spatially and temporally limit and subsequently control such an outbreak. However, if rabies emerged in the raccoon population in Germany (Procyon lotor), there are no tools or local experience available to cope with this situation. This is especially worrisome for urban areas like Kassel (Hesse) due to the extremely high raccoon population density. A rabies outbreak among this potential reservoir host species in these urban settings could have a significant impact on public and animal health. PMID:22712420

  1. The armadillo as an animal model and reservoir host for Mycobacterium leprae.

    PubMed

    Balamayooran, Gayathriy; Pena, Maria; Sharma, Rahul; Truman, Richard W

    2015-01-01

    Apart from humans, armadillos are the only known natural hosts of Mycobacterium leprae. They are well developed as hosts for in vivo propagation of M leprae and are advancing as models for studying the pathogenesis of leprosy and translational research. Armadillos are immunologically intact. They exhibit the full Ridley-Jopling spectrum of histopathologic responses to M leprae and uniquely manifest extensive neurological involvement that closely recapitulates human leprosy. In addition, free-ranging armadillos in some regions are known to harbor a naturally occurring infection with M leprae, and zoonotic transmission between armadillos and humans has been implicated in a large number of new case presentations. We review the role of the armadillo as a model for leprosy and reservoir for human infection. PMID:25432816

  2. Potential on-shore and off-shore reservoirs for CO2 sequestration in Central Atlantic magmatic province basalts

    PubMed Central

    Goldberg, David S.; Kent, Dennis V.; Olsen, Paul E.

    2010-01-01

    Identifying locations for secure sequestration of CO2 in geological formations is one of our most pressing global scientific problems. Injection into basalt formations provides unique and significant advantages over other potential geological storage options, including large potential storage volumes and permanent fixation of carbon by mineralization. The Central Atlantic Magmatic Province basalt flows along the eastern seaboard of the United States may provide large and secure storage reservoirs both onshore and offshore. Sites in the South Georgia basin, the New York Bight basin, and the Sandy Hook basin offer promising basalt-hosted reservoirs with considerable potential for CO2 sequestration due to their proximity to major metropolitan centers, and thus to large industrial sources for CO2. Onshore sites are suggested for cost-effective characterization studies of these reservoirs, although offshore sites may offer larger potential capacity and additional long-term advantages for safe and secure CO2 sequestration. PMID:20080705

  3. Wildlife reservoirs of bovine tuberculosis worldwide: hosts, pathology, surveillance, and control.

    PubMed

    Fitzgerald, S D; Kaneene, J B

    2013-05-01

    Bovine tuberculosis due to Mycobacterium bovis is a zoonotic disease classically carried by cattle and spilling over into humans primarily by the ingestion of milk. However, in recent decades, there have been many endemic geographic localities where M. bovis has been detected infecting wildlife reservoirs, limiting the progress toward eradication of this disease from cattle. These include cervids in North America, badgers in Great Britain, feral pigs in Europe, brushtailed possums in New Zealand, and buffalo in South Africa. An overview of these wildlife hosts will provide insight into how these reservoirs maintain and spread the disease. In addition, the authors summarize the pathology, current ongoing methods for surveillance, and control. In many instances, it has proven to be more difficult to control or eradicate bovine tuberculosis in wild free-ranging species than in domesticated cattle. Furthermore, human influences have often contributed to the introduction and/or maintenance of the disease in wildlife species. Finally, some emerging themes regarding bovine tuberculosis establishment in wildlife hosts, as well as conclusions regarding management practices to assist in bovine tuberculosis control and eradication in wildlife, are offered. PMID:23169912

  4. Poultry as reservoir hosts for fishborne zoonotic trematodes in Vietnamese fish farms.

    PubMed

    Anh, Nguyen Thi Lan; Madsen, Henry; Dalsgaard, Anders; Phuong, Nguyen Thi; Thanh, Dao Thi Ha; Murrell, K Darwin

    2010-05-11

    Fishborne zoonotic trematodes (FZT) are widespread in Vietnam and Southeast Asia. It is now recognized that the risk of being infected from eating raw fish dishes applies not only to humans, but also to domestic animals (e.g., cats, dogs, and pigs) and fish-eating birds. The role of ducks and chicken, commonly raised on fish farms, as reservoir hosts, however, has not been adequately investigated. To study this question, chickens and ducks from integrated poultry-fish farms in Nghia Lac and Nghia Phu communes, Nam Dinh province, Vietnam were surveyed for FZT infections. A total of 50 ducks and 50 chickens from each commune were examined. Results revealed that 12% of chickens and 30% of ducks were infected with various species of trematodes, including two zoonotic species, Centrocestus formosanus and Echinostoma cinetorchis. Both occurred in chickens whereas only E. cinetorchis was found in ducks. Prevalence of these zoonotic species was 12% and 7% in ducks and chickens, respectively. Among other trematodes, Hypoderaeum conoideum, also a zoonotic fluke, was the most prevalent (20-30%). The feeding of snails and fish remains to poultry, either intentionally or by discharge of waste from the slaughter of ducks and chickens into the ponds, was identified as risk factors for trematode infection. The FZT species and low prevalence found in poultry in these communes indicate their role as reservoir hosts is minor. PMID:20149548

  5. Tacaribe Virus Causes Fatal Infection of An Ostensible Reservoir Host, the Jamaican Fruit Bat

    PubMed Central

    Cogswell-Hawkinson, Ann; Bowen, Richard; James, Stephanie; Gardiner, David; Calisher, Charles H.; Adams, Rick

    2012-01-01

    Tacaribe virus (TCRV) was first isolated from 11 Artibeus species bats captured in Trinidad in the 1950s during a rabies virus surveillance program. Despite significant effort, no evidence of infection of other mammals, mostly rodents, was found, suggesting that no other vertebrates harbored TCRV. For this reason, it was hypothesized that TCRV was naturally hosted by artibeus bats. This is in stark contrast to other arenaviruses with known hosts, all of which are rodents. To examine this hypothesis, we conducted experimental infections of Jamaican fruit bats (Artibeus jamaicensis) to determine whether they could be persistently infected without substantial pathology. We subcutaneously or intranasally infected bats with TCRV strain TRVL-11573, the only remaining strain of TCRV, and found that low-dose (104 50% tissue culture infective dose [TCID50]) inoculations resulted in asymptomatic and apathogenic infection and virus clearance, while high-dose (106 TCID50) inoculations caused substantial morbidity and mortality as early as 10 days postinfection. Uninoculated cage mates failed to seroconvert, and viral RNA was not detected in their tissues, suggesting that transmission did not occur. Together, these data suggest that A. jamaicensis bats may not be a reservoir host for TCRV. PMID:22379103

  6. Reservoir quality and potential, National Petroleum Reserve in Alaska

    SciTech Connect

    Mowatt, T.C.; Seidlitz, A.; Gibson, C.; Bascle, R.; Dygas, J. )

    1991-03-01

    As part of the reservoir management, resource assessment, and planning programs of the U.S. Bureau of Land Management in Alaska, the oil and gas resource potential of the National Petroleum Reserve in Alaska (NPRA) is undergoing review in light of new technical information, as well as changing national and international socioeconomic conditions. Emphasis is on integration of geological, petrophysical, geophysical, and engineering information to provide a refined, more technically substantive knowledge base for resource assessment and management. Brookian clastic rocks - in particular the Nanushuk Group and underlying Torok/Topagoruk intervals - have been the principal horizons of concern. Petrologic-mineralogic characteristics have been reinvestigated, related to petrophysical parameters and wireline log responses, and integrated with available engineering data, for key wells within and peripheral to the NPRA. Particular attention has been directed to diagenetic relationships, effects on reservoir quality, and implications for untested portions of this sizable basin. Similar efforts have been directed to pre-Brookian strata as well. Only some 127 exploratory wells (all but one under government aegis) have been drilled within or adjacent to NPRA (a geographic area on the order of 37,000 mi{sup 2} - about the size of the state of Indiana), many only to shallow depths. In almost every well drilled to any appreciable depth in the area, there have been manifestations of the presence of hydrocarbons. The results to date are actually rather promising from a qualitative geologic-geochemical perspective, in terms of potential for significant resources to be present.

  7. Potential Geographic Distribution of Hantavirus Reservoirs in Brazil

    PubMed Central

    de Oliveira, Stefan Vilges; Escobar, Luis E.; Peterson, A. Townsend; Gurgel-Gonçalves, Rodrigo

    2013-01-01

    Hantavirus cardiopulmonary syndrome is an emerging zoonosis in Brazil. Human infections occur via inhalation of aerosolized viral particles from excreta of infected wild rodents. Necromys lasiurus and Oligoryzomys nigripes appear to be the main reservoirs of hantavirus in the Atlantic Forest and Cerrado biomes. We estimated and compared ecological niches of the two rodent species, and analyzed environmental factors influencing their occurrence, to understand the geography of hantavirus transmission. N. lasiurus showed a wide potential distribution in Brazil, in the Cerrado, Caatinga, and Atlantic Forest biomes. Highest climate suitability for O. nigripes was observed along the Brazilian Atlantic coast. Maximum temperature in the warmest months and annual precipitation were the variables that most influence the distributions of N. lasiurus and O. nigripes, respectively. Models based on occurrences of infected rodents estimated a broader area of risk for hantavirus transmission in southeastern and southern Brazil, coinciding with the distribution of human cases of hantavirus cardiopulmonary syndrome. We found no demonstrable environmental differences among occurrence sites for the rodents and for human cases of hantavirus. However, areas of northern and northeastern Brazil are also apparently suitable for the two species, without broad coincidence with human cases. Modeling of niches and distributions of rodent reservoirs indicates potential for transmission of hantavirus across virtually all of Brazil outside the Amazon Basin. PMID:24391989

  8. A novel approach to assess the probability of disease eradication from a wild-animal reservoir host.

    PubMed

    Anderson, D P; Ramsey, D S L; Nugent, G; Bosson, M; Livingstone, P; Martin, P A J; Sergeant, E; Gormley, A M; Warburton, B

    2013-07-01

    Surveying and declaring disease freedom in wildlife is difficult because information on population size and spatial distribution is often inadequate. We describe and demonstrate a novel spatial model of wildlife disease-surveillance data for predicting the probability of freedom of bovine tuberculosis (caused by Mycobacterium bovis) in New Zealand, in which the introduced brushtail possum (Trichosurus vulpecula) is the primary wildlife reservoir. Using parameters governing home-range size, probability of capture, probability of infection and spatial relative risks of infection we employed survey data on reservoir hosts and spillover sentinels to make inference on the probability of eradication. Our analysis revealed high sensitivity of model predictions to parameter values, which demonstrated important differences in the information contained in survey data of host-reservoir and spillover-sentinel species. The modelling can increase cost efficiency by reducing the likelihood of prematurely declaring success due to insufficient control, and avoiding unnecessary costs due to excessive control and monitoring. PMID:23339965

  9. Cumberlandian Mollusk Conservation Program. Activity 2: potential fish hosts

    SciTech Connect

    Koch, L.M.; Hickman, G.D.; Swor, C.T.

    1986-02-01

    Fish species from sand/gravel substrates and from rubble substrates which are the most likely hosts for Cumberlandian mussel fauna, C. caelata and Q. intermedia, from the Clinch, Duck, Elk, and Powell Rivers are reported. Infection with mollusk glochidia was used with overlap and occurrences to develop a ranking of each species potential as a suitable host for Cumberlandian mollusks. 12 ref., 4 figs., 9 tabs.

  10. Ecological Connectivity of Trypanosoma cruzi Reservoirs and Triatoma pallidipennis Hosts in an Anthropogenic Landscape with Endemic Chagas Disease

    PubMed Central

    Ramsey, Janine M.; Gutiérrez-Cabrera, Ana E.; Salgado-Ramírez, Liliana; Peterson, A. Townsend; Sánchez-Cordero, Victor; Ibarra-Cerdeña, Carlos N.

    2012-01-01

    Traditional methods for Chagas disease prevention are targeted at domestic vector reduction, as well as control of transfusion and maternal-fetal transmission. Population connectivity of Trypanosoma cruzi-infected vectors and hosts, among sylvatic, ecotone and domestic habitats could jeopardize targeted efforts to reduce human exposure. This connectivity was evaluated in a Mexican community with reports of high vector infestation, human infection, and Chagas disease, surrounded by agricultural and natural areas. We surveyed bats, rodents, and triatomines in dry and rainy seasons in three adjacent habitats (domestic, ecotone, sylvatic), and measured T. cruzi prevalence, and host feeding sources of triatomines. Of 12 bat and 7 rodent species, no bat tested positive for T. cruzi, but all rodent species tested positive in at least one season or habitat. Highest T. cruzi infection prevalence was found in the rodents, Baiomys musculus and Neotoma mexicana. In general, parasite prevalence was not related to habitat or season, although the sylvatic habitat had higher infection prevalence than by chance, during the dry season. Wild and domestic mammals were identified as bloodmeals of T. pallidipennis, with 9% of individuals having mixed human (4.8% single human) and other mammal species in bloodmeals, especially in the dry season; these vectors tested >50% positive for T. cruzi. Overall, ecological connectivity is broad across this matrix, based on high rodent community similarity, vector and T. cruzi presence. Cost-effective T. cruzi, vector control strategies and Chagas disease transmission prevention will need to consider continuous potential for parasite movement over the entire landscape. This study provides clear evidence that these strategies will need to include reservoir/host species in at least ecotones, in addition to domestic habitats. PMID:23049923

  11. Ecological connectivity of Trypanosoma cruzi reservoirs and Triatoma pallidipennis hosts in an anthropogenic landscape with endemic Chagas disease.

    PubMed

    Ramsey, Janine M; Gutiérrez-Cabrera, Ana E; Salgado-Ramírez, Liliana; Peterson, A Townsend; Sánchez-Cordero, Victor; Ibarra-Cerdeña, Carlos N

    2012-01-01

    Traditional methods for Chagas disease prevention are targeted at domestic vector reduction, as well as control of transfusion and maternal-fetal transmission. Population connectivity of Trypanosoma cruzi-infected vectors and hosts, among sylvatic, ecotone and domestic habitats could jeopardize targeted efforts to reduce human exposure. This connectivity was evaluated in a Mexican community with reports of high vector infestation, human infection, and Chagas disease, surrounded by agricultural and natural areas. We surveyed bats, rodents, and triatomines in dry and rainy seasons in three adjacent habitats (domestic, ecotone, sylvatic), and measured T. cruzi prevalence, and host feeding sources of triatomines. Of 12 bat and 7 rodent species, no bat tested positive for T. cruzi, but all rodent species tested positive in at least one season or habitat. Highest T. cruzi infection prevalence was found in the rodents, Baiomys musculus and Neotoma mexicana. In general, parasite prevalence was not related to habitat or season, although the sylvatic habitat had higher infection prevalence than by chance, during the dry season. Wild and domestic mammals were identified as bloodmeals of T. pallidipennis, with 9% of individuals having mixed human (4.8% single human) and other mammal species in bloodmeals, especially in the dry season; these vectors tested >50% positive for T. cruzi. Overall, ecological connectivity is broad across this matrix, based on high rodent community similarity, vector and T. cruzi presence. Cost-effective T. cruzi, vector control strategies and Chagas disease transmission prevention will need to consider continuous potential for parasite movement over the entire landscape. This study provides clear evidence that these strategies will need to include reservoir/host species in at least ecotones, in addition to domestic habitats. PMID:23049923

  12. Utility of Filter Paper for Preserving Insects, Bacteria, and Host Reservoir DNA for Molecular Testing

    PubMed Central

    Karimian, F; Sedaghat, MM; Oshaghi, MA; Mohtarami, F; Dehkordi, A Sanei; Koosha, M; Akbari, S; Hashemi-Aghdam, SS

    2011-01-01

    Background: Appropriate methodology for storage biological materials, extraction of DNA, and proper DNA preservation is vital for studies involving genetic analysis of insects, bacteria, and reservoir hosts as well as for molecular diagnostics of pathogens carried by vectors and reservoirs. Here we tried to evaluate the utility of a simple filter paper-based for storage of insects, bacteria, rodent, and human DNAs using PCR assays. Methods: Total body or haemolymph of individual mosquitoes, sand flies or cockroaches squashed or placed on the paper respectively. Extracted DNA of five different bacteria species as well as blood specimens of human and great gerbil Rhombomys opimus was pipetted directly onto filter paper. The papers were stored in room temperature up to 12 months during 2009 until 2011. At monthly intervals, PCR was conducted using a 1-mm disk from the DNA impregnated filter paper as target DNA. PCR amplification was performed against different target genes of the organisms including the ITS2-rDNA of mosquitoes, mtDNA-COI of the sand flies and cockroaches, 16SrRNA gene of the bacteria, and the mtDNA-CytB of the vertebrates. Results: Successful PCR amplification was observed for all of the specimens regardless of the loci, taxon, or time of storage. The PCR amplification were ranged from 462 to 1500 bp and worked well for the specified target gene/s. Time of storage did not affect the amplification up to one year. Conclusion: The filter paper method is a simple and economical way to store, to preserve, and to distribute DNA samples for PCR analysis. PMID:22808417

  13. Capsicum Species: Symptomless Hosts and Reservoirs of Tomato yellow leaf curl virus.

    PubMed

    Polston, J E; Cohen, L; Sherwood, T A; Ben-Joseph, R; Lapidot, M

    2006-05-01

    ABSTRACT Five Capsicum species were tested for susceptibility to Tomato yellow leaf curl virus (TYLCV) and the mild strain of TYLCV (TYLCV-Mld). TYLCV was able to infect 30 of 55 genotypes of C. annuum, one of six genotypes of C. chinense, one of two genotypes of C. baccatum, and the only genotype of C. frutescens tested but was unable to infect the one genotype of C. pubescens tested. This is the first evidence for the susceptibility of C. baccatum, C. chinense, and C. frutescens to TYLCV. Unlike TYLCV isolates, TYLCV-Mld was unable to infect C. chinense. No host differences were observed between the Israeli and Florida isolates of TYLCV. None of the Capsicum species showed symptoms after infection with TYLCV or TYLCV-Mld. TYLCV was detected in fruits of C. annuum, but whiteflies were unable to transmit virus from fruits to plants. White-flies were able to transmit both TYLCV and TYLCV-Mld from infected pepper plants to tomato plants. Pepper plants in research plots were found infected with TYLCV at rates as much as 100%. These data demonstrate the ability of some genotypes of pepper to serve as reservoirs for the acquisition and transmission of TYLCV and TYLCV-Mld. PMID:18944303

  14. The rabbit as a new reservoir host of enterohemorrhagic Escherichia coli.

    PubMed

    García, Alexis; Fox, James G

    2003-12-01

    We investigated the prevalence of enterohemorrhagic Escherichia coli (EHEC) in rabbits acquired from two commercial vendors and a local petting zoo. Fecal samples from 34 Dutch Belted (DB) and 15 New Zealand White (NZW) rabbits were cultured; and isolates were biotyped, serotyped, tested by polymerase chain reaction (PCR), and genotyped by repetitive-element sequence-based PCR (Rep-PCR). Seven (25%) of 28 DB rabbits acquired from one commercial source were positive for EHEC, including O153:H- and O153:H7. One (9%) of 11 NZW rabbits from the same source was positive for eae-, stx1+ O153 strains. In contrast, six DB rabbits from another commercial source and four rabbits from a petting zoo were negative for EHEC. Rep-PCR demonstrated that the O153 EHEC and O145 enteropathogenic E. coli were two distinct clones. Our study indicates that rabbits are a new reservoir host of EHEC that may pose a zoonotic risk for humans. PMID:14720401

  15. The Rabbit as a New Reservoir Host of Enterohemorrhagic Escherichia coli

    PubMed Central

    Fox, James G.

    2003-01-01

    We investigated the prevalence of enterohemorrhagic Escherichia coli (EHEC) in rabbits acquired from two commercial vendors and a local petting zoo. Fecal samples from 34 Dutch Belted (DB) and 15 New Zealand White (NZW) rabbits were cultured; and isolates were biotyped, serotyped, tested by polymerase chain reaction (PCR), and genotyped by repetitive-element sequence–based PCR (Rep-PCR). Seven (25%) of 28 DB rabbits acquired from one commercial source were positive for EHEC, including O153:H- and O153:H7. One (9%) of 11 NZW rabbits from the same source was positive for eae-, stx1+ O153 strains. In contrast, six DB rabbits from another commercial source and four rabbits from a petting zoo were negative for EHEC. Rep-PCR demonstrated that the O153 EHEC and O145 enteropathogenic E. coli were two distinct clones. Our study indicates that rabbits are a new reservoir host of EHEC that may pose a zoonotic risk for humans. PMID:14720401

  16. Bioremediation potential of microorganisms derived from petroleum reservoirs.

    PubMed

    Dellagnezze, Bruna Martins; de Sousa, Gabriel Vasconcelos; Martins, Laercio Lopes; Domingos, Daniela Ferreira; Limache, Elmer E G; de Vasconcellos, Suzan Pantaroto; da Cruz, Georgiana Feitosa; de Oliveira, Valéria Maia

    2014-12-15

    Bacterial strains and metagenomic clones, both obtained from petroleum reservoirs, were evaluated for petroleum degradation abilities either individually or in pools using seawater microcosms for 21 days. Gas Chromatography-Flame Ionization Detector (GC-FID) and Gas Chromatography-Mass Spectrometry (GC-MS) analyses were carried out to evaluate crude oil degradation. The results showed that metagenomic clones 1A and 2B were able to biodegrade n-alkanes (C14 to C33) and isoprenoids (phytane and pristane), with rates ranging from 31% to 47%, respectively. The bacteria Dietzia maris CBMAI 705 and Micrococcus sp. CBMAI 636 showed higher rates reaching 99% after 21 days. The metagenomic clone pool biodegraded these compounds at rates ranging from 11% to 45%. Regarding aromatic compound biodegradation, metagenomic clones 2B and 10A were able to biodegrade up to 94% of phenanthrene and methylphenanthrenes (3-MP, 2-MP, 9-MP and 1-MP) with rates ranging from 55% to 70% after 21 days, while the bacteria Dietzia maris CBMAI 705 and Micrococcus sp. CBMAI 636 were able to biodegrade 63% and up to 99% of phenanthrene, respectively, and methylphenanthrenes (3-MP, 2-MP, 9-MP and 1-MP) with rates ranging from 23% to 99% after 21 days. In this work, isolated strains as well as metagenomic clones were capable of degrading several petroleum compounds, revealing an innovative strategy and a great potential for further biotechnological and bioremediation applications. PMID:25457810

  17. Influenza virus reservoirs and intermediate hosts: dogs, horses, and new possibilities for influenza virus exposure of humans.

    PubMed

    Parrish, Colin R; Murcia, Pablo R; Holmes, Edward C

    2015-03-01

    Influenza A virus (IAV) infections in hosts outside the main aquatic bird reservoirs occur periodically. Although most such cross-species transmission events result in limited onward transmission in the new host, sustained influenza outbreaks have occurred in poultry and in a number of mammalian species, including humans, pigs, horses, seals, and mink. Recently, two distinct strains of IAV have emerged in domestic dogs, with each circulating widely for several years. Here, we briefly outline what is known about the role of intermediate hosts in influenza emergence, summarize our knowledge of the new canine influenza viruses (CIVs) and how they provide key new information on the process of host adaptation, and assess the risk these viruses pose to human populations. PMID:25540375

  18. Influenza Virus Reservoirs and Intermediate Hosts: Dogs, Horses, and New Possibilities for Influenza Virus Exposure of Humans

    PubMed Central

    Murcia, Pablo R.; Holmes, Edward C.

    2014-01-01

    Influenza A virus (IAV) infections in hosts outside the main aquatic bird reservoirs occur periodically. Although most such cross-species transmission events result in limited onward transmission in the new host, sustained influenza outbreaks have occurred in poultry and in a number of mammalian species, including humans, pigs, horses, seals, and mink. Recently, two distinct strains of IAV have emerged in domestic dogs, with each circulating widely for several years. Here, we briefly outline what is known about the role of intermediate hosts in influenza emergence, summarize our knowledge of the new canine influenza viruses (CIVs) and how they provide key new information on the process of host adaptation, and assess the risk these viruses pose to human populations. PMID:25540375

  19. Pteropid bats are confirmed as the reservoir hosts of henipaviruses: a comprehensive experimental study of virus transmission.

    PubMed

    Halpin, Kim; Hyatt, Alex D; Fogarty, Rhys; Middleton, Deborah; Bingham, John; Epstein, Jonathan H; Rahman, Sohayati Abdul; Hughes, Tom; Smith, Craig; Field, Hume E; Daszak, Peter

    2011-11-01

    Bats of the genus Pteropus have been identified as the reservoir hosts for the henipaviruses Hendra virus (HeV) and Nipah virus (NiV). The aim of these studies was to assess likely mechanisms for henipaviruses transmission from bats. In a series of experiments, Pteropus bats from Malaysia and Australia were inoculated with NiV and HeV, respectively, by natural routes of infection. Despite an intensive sampling strategy, no NiV was recovered from the Malaysian bats and HeV was reisolated from only one Australian bat; no disease was seen. These experiments suggest that opportunities for henipavirus transmission may be limited; therefore, the probability of a spillover event is low. For spillover to occur, a range of conditions and events must coincide. An alternate assessment framework is required if we are to fully understand how this reservoir host maintains and transmits not only these but all viruses with which it has been associated. PMID:22049055

  20. Essential Role of Invasin for Colonization and Persistence of Yersinia enterocolitica in Its Natural Reservoir Host, the Pig

    PubMed Central

    Schaake, Julia; Drees, Anna; Grüning, Petra; Uliczka, Frank; Pisano, Fabio; Thiermann, Tanja; von Altrock, Alexandra; Seehusen, Frauke

    2014-01-01

    In this study, an oral minipig infection model was established to investigate the pathogenicity of Yersinia enterocolitica bioserotype 4/O:3. O:3 strains are highly prevalent in pigs, which are usually symptomless carriers, and they represent the most common cause of human yersiniosis. To assess the pathogenic potential of the O:3 serotype, we compared the colonization properties of Y. enterocolitica O:3 with O:8, a highly mouse-virulent Y. enterocolitica serotype, in minipigs and mice. We found that O:3 is a significantly better colonizer of swine than is O:8. Coinfection studies with O:3 mutant strains demonstrated that small variations within the O:3 genome leading to higher amounts of the primary adhesion factor invasin (InvA) improved colonization and/or survival of this serotype in swine but had only a minor effect on the colonization of mice. We further demonstrated that a deletion of the invA gene abolished long-term colonization in the pigs. Our results indicate a primary role for invasin in naturally occurring Y. enterocolitica O:3 infections in pigs and reveal a higher adaptation of O:3 than O:8 strains to their natural pig reservoir host. PMID:24343656

  1. Does influenza A virus infection affect movement behaviour during stopover in its wild reservoir host?

    PubMed Central

    Bengtsson, Daniel; Safi, Kamran; Avril, Alexis; Fiedler, Wolfgang; Wikelski, Martin; Gunnarsson, Gunnar; Elmberg, Johan; Tolf, Conny; Olsen, Björn; Waldenström, Jonas

    2016-01-01

    The last decade has seen a surge in research on avian influenza A viruses (IAVs), in part fuelled by the emergence, spread and potential zoonotic importance of highly pathogenic virus subtypes. The mallard (Anas platyrhynchos) is the most numerous and widespread dabbling duck in the world, and one of the most important natural hosts for studying IAV transmission dynamics. In order to predict the likelihood of IAV transmission between individual ducks and to other hosts, as well as between geographical regions, it is important to understand how IAV infection affects the host. In this study, we analysed the movements of 40 mallards equipped with GPS transmitters and three-dimensional accelerometers, of which 20 were naturally infected with low pathogenic avian influenza virus (LPAIV), at a major stopover site in the Northwest European flyway. Movements differed substantially between day and night, as well as between mallards returning to the capture site and those feeding in natural habitats. However, movement patterns did not differ between LPAIV infected and uninfected birds. Hence, LPAIV infection probably does not affect mallard movements during stopover, with high possibility of virus spread along the migration route as a consequence. PMID:26998334

  2. Bayou virus-associated hantavirus pulmonary syndrome in Eastern Texas: identification of the rice rat, Oryzomys palustris, as reservoir host.

    PubMed Central

    Torrez-Martinez, N.; Bharadwaj, M.; Goade, D.; Delury, J.; Moran, P.; Hicks, B.; Nix, B.; Davis, J. L.; Hjelle, B.

    1998-01-01

    We describe the third known case of hantavirus pulmonary syndrome (HPS) due to Bayou virus, from Jefferson County, Texas. By using molecular epidemiologic methods, we show that rice rats (Oryzomys palustris) are frequently infected with Bayou virus and that viral RNA sequences from HPS patients are similar to those from nearby rice rats. Bayou virus is associated with O. palustris; this rodent appears to be its predominant reservoir host. PMID:9452404

  3. Integrated geologic and engineering determination of oil-reserve-growth potential in carbonate reservoirs

    SciTech Connect

    Holtz, M.H.; Rupel, S.C.; Hocott, C.R. )

    1992-11-01

    Leonardian restricted-platform carbonate reservoirs in the Permian Basin in West Texas and southeastern New Mexico exhibit abnormally low recovery efficiencies. Cumulative production form these mature reservoirs is only 18% of the original oil in place (OOIP), or about one-half the average recovery efficiency of Permian Basin carbonate reservoirs. Low recovery efficiency is directly related to high degrees of vertical and lateral facies heterogeneity caused by high-frequency, cyclic sedimentation in low-energy, carbonate platform environments and by equally complex postdepositional diagenesis. This paper reports that because of their geologic complexity, these reservoirs have high reserve-growth potential.

  4. Exploring the Spatio-Temporal Dynamics of Reservoir Hosts, Vectors, and Human Hosts of West Nile Virus: A Review of the Recent Literature

    PubMed Central

    Ozdenerol, Esra; Taff, Gregory N.; Akkus, Cem

    2013-01-01

    Over the last two decades West Nile Virus (WNV) has been responsible for significant disease outbreaks in humans and animals in many parts of the World. Its extremely rapid global diffusion argues for a better understanding of its geographic extent. The purpose of this inquiry was to explore spatio-temporal patterns of WNV using geospatial technologies to study populations of the reservoir hosts, vectors, and human hosts, in addition to the spatio-temporal interactions among these populations. Review of the recent literature on spatial WNV disease risk modeling led to the conclusion that numerous environmental factors might be critical for its dissemination. New Geographic Information Systems (GIS)-based studies are monitoring occurrence at the macro-level, and helping pinpoint areas of occurrence at the micro-level, where geographically-targeted, species-specific control measures are sometimes taken and more sophisticated methods of surveillance have been used. PMID:24284356

  5. Discovering potential sources of emerging pathogens: South America is a reservoir of generalist avian blood parasites.

    PubMed

    Moens, Michaël A J; Pérez-Tris, Javier

    2016-01-01

    Generalist pathogens are capable of infecting a wide range of host species, and may pose serious disease emergence threats if accidentally moved outside their native areas. To date little effort has been devoted to identifying geographic areas that may act as reservoirs of generalist pathogens. According to current theory, where host diversity is high, parasite specialisation in one host species may be penalised by reduced host availability, while generalist parasites may benefit from the exploitation of various host species. Therefore natural selection could favor generalist parasites where host diversity is high. Here we explored if, in a highly diverse bird community in Ecuador, a generalist strategy is promoted among local Haemoproteus and Plasmodium blood-borne parasites compared with similar parasite communities throughout the world. We reconstructed the phylogenetic relationships of every parasite lineage in order to understand the evolution of host specificity in this megadiverse area. We found high levels of host generalisation for both parasite genera, and the mean host range of the Haemoproteus community in Ecuador was significantly higher than other parasite communities in other areas outside the Neotropics. Generalist Haemoproteus parasites in this bird community had diverse phylogenetic ancestry, were closely related to specialist parasites and were apparently endemic to the Amazon, showing that different parasites have independently evolved into host generalists in this region. Finally we show that Haemoproteus communities in Ecuador and South America are more generalist than in temperate areas, making this continent a hotspot of generalist Haemoproteus parasites for wild birds. PMID:26348660

  6. Viral metagenomics demonstrates that domestic pigs are a potential reservoir for Ndumu virus

    PubMed Central

    2012-01-01

    Background The rising demand for pork has resulted in a massive expansion of pig production in Uganda. This has resulted in increased contact between humans and pigs. Pigs can act as reservoirs for emerging infectious diseases. Therefore identification of potential zoonotic pathogens is important for public health surveillance. In this study, during a routine general surveillance for African swine fever, domestic pigs from Uganda were screened for the presence of RNA and DNA viruses using a high-throughput pyrosequencing method. Findings Serum samples from 16 domestic pigs were collected from five regions in Uganda and pooled accordingly. Genomic DNA and RNA were extracted and sequenced on the 454 GS-FLX platform. Among the sequences assigned to a taxon, 53% mapped to the domestic pig (Sus scrofa). African swine fever virus, Torque teno viruses (TTVs), and porcine endogenous retroviruses were identified. Interestingly, two pools (B and C) of RNA origin had sequences that showed 98% sequence identity to Ndumu virus (NDUV). None of the reads had identity to the class Insecta indicating that these sequences were unlikely to result from contamination with mosquito nucleic acids. Conclusions This is the first report of the domestic pig as a vertebrate host for Ndumu virus. NDUV had been previously isolated only from culicine mosquitoes. NDUV therefore represents a potential zoonotic pathogen, particularly given the increasing risk of human-livestock-mosquito contact. PMID:23006778

  7. The ecology of cutaneous leishmaniasis in Nizzana, Israel: infection patterns in the reservoir host, and epidemiological implications.

    PubMed

    Wasserberg, G; Abramsky, Z; Anders, G; El-Fari, M; Schoenian, G; Schnur, L; Kotler, B P; Kabalo, I; Warburg, A

    2002-02-01

    We conducted an extensive interdisciplinary study in an emerging focus of cutaneous leishmaniasis in the Western Negev Desert of Israel between July 1998 and February 2000. The aims of the this study were to determine (1) the reservoir hosts, (2) the distribution of the pathogen within the host range, (3) the associations of host, vector, and pathogen within defined habitats, (4) the demographic distribution of the pathogen within the host populations, and (5) to apply the newly acquired epizootiological data to explain morbidity patterns in humans. Fourteen square (60 m width) sampling plots were delimited in three types of habitats each with a different kind of substrate: loess, sand, and sand-loess ecotone. Rodents and sand flies were trapped and several environmental variables were measured. Leishmania infections in rodents were detected microscopically in stained smears of ear tissue and by a Leishmania-specific polymerase chain reaction. Results indicate that, contrary to previous reports, Psammomys obesus and not Meriones crassus is the main reservoir host in the region. Additional rodents (12 Gerbillus dasyurus and two M. crassus) were also found positive for Leishmania DNA. Prevalence of Leishmania infections amongst P. obesus was highest in loess habitats (65%), intermediate in the sandy-loess ecotone (20%), and 0% in the sandy habitats. Psammomys obesus individuals in the loess habitat of the Nizzana ruins were larger, on average (probably older), than those in the sandy habitat of the Mt. Keren junction. Sand fly density was positively correlated to soil moisture being higher in the relatively humid plots of Nizzana ruins and much lower in the drier sandy soil of Mt. Keren. Elucidation of fundamental ecological factors affecting this disease has helped explain an apparent discrepancy between the distribution of the disease in the zoonotic system and among humans. PMID:11812490

  8. Interaction of Bovine Peripheral Blood Polymorphonuclear Cells and Leptospira Species; Innate Responses in the Natural Bovine Reservoir Host

    PubMed Central

    Wilson-Welder, Jennifer H.; Frank, Ami T.; Hornsby, Richard L.; Olsen, Steven C.; Alt, David P.

    2016-01-01

    Cattle are the reservoir hosts of Leptospira borgpetersenii serovar Hardjo, and can also be reservoir hosts of other Leptospira species such as L. kirschneri, and Leptospira interrogans. As a reservoir host, cattle shed Leptospira, infecting other animals, including humans. Previous studies with human and murine neutrophils have shown activation of neutrophil extracellular trap or NET formation, and upregulation of inflammatory mediators by neutrophils in the presence of Leptospira. Humans, companion animals and most widely studied models of Leptospirosis are of acute infection, hallmarked by systemic inflammatory response, neutrophilia, and septicemia. In contrast, cattle exhibit chronic infection with few outward clinical signs aside from reproductive failure. Taking into consideration that there is host species variation in innate immunity, especially in pathogen recognition and response, the interaction of bovine peripheral blood polymorphonuclear cells (PMNs) and several Leptospira strains was evaluated. Studies including bovine-adapted strains, human pathogen strains, a saprophyte and inactivated organisms. Incubation of PMNs with Leptospira did induce slight activation of neutrophil NETs, greater than unstimulated cells but less than the quantity from E. coli P4 stimulated PMNs. Very low but significant from non-stimulated, levels of reactive oxygen peroxides were produced in the presence of all Leptospira strains and E. coli P4. Similarly, significant levels of reactive nitrogen intermediaries (NO2) was produced from PMNs when incubated with the Leptospira strains and greater quantities in the presence of E. coli P4. PMNs incubated with Leptospira induced RNA transcripts of IL-1β, MIP-1α, and TNF-α, with greater amounts induced by live organisms when compared to heat-inactivated leptospires. Transcript for inflammatory cytokine IL-8 was also induced, at similar levels regardless of Leptospira strain or viability. However, incubation of Leptospira strains

  9. Interaction of Bovine Peripheral Blood Polymorphonuclear Cells and Leptospira Species; Innate Responses in the Natural Bovine Reservoir Host.

    PubMed

    Wilson-Welder, Jennifer H; Frank, Ami T; Hornsby, Richard L; Olsen, Steven C; Alt, David P

    2016-01-01

    Cattle are the reservoir hosts of Leptospira borgpetersenii serovar Hardjo, and can also be reservoir hosts of other Leptospira species such as L. kirschneri, and Leptospira interrogans. As a reservoir host, cattle shed Leptospira, infecting other animals, including humans. Previous studies with human and murine neutrophils have shown activation of neutrophil extracellular trap or NET formation, and upregulation of inflammatory mediators by neutrophils in the presence of Leptospira. Humans, companion animals and most widely studied models of Leptospirosis are of acute infection, hallmarked by systemic inflammatory response, neutrophilia, and septicemia. In contrast, cattle exhibit chronic infection with few outward clinical signs aside from reproductive failure. Taking into consideration that there is host species variation in innate immunity, especially in pathogen recognition and response, the interaction of bovine peripheral blood polymorphonuclear cells (PMNs) and several Leptospira strains was evaluated. Studies including bovine-adapted strains, human pathogen strains, a saprophyte and inactivated organisms. Incubation of PMNs with Leptospira did induce slight activation of neutrophil NETs, greater than unstimulated cells but less than the quantity from E. coli P4 stimulated PMNs. Very low but significant from non-stimulated, levels of reactive oxygen peroxides were produced in the presence of all Leptospira strains and E. coli P4. Similarly, significant levels of reactive nitrogen intermediaries (NO2) was produced from PMNs when incubated with the Leptospira strains and greater quantities in the presence of E. coli P4. PMNs incubated with Leptospira induced RNA transcripts of IL-1β, MIP-1α, and TNF-α, with greater amounts induced by live organisms when compared to heat-inactivated leptospires. Transcript for inflammatory cytokine IL-8 was also induced, at similar levels regardless of Leptospira strain or viability. However, incubation of Leptospira strains

  10. Quantitative evaluation of oil-leg potential in gas reservoirs

    SciTech Connect

    Lisk, M.; Krieger, F.W.; Eadington, P.J.; O`Brien, G.W.

    1996-12-31

    Oil bearing fluid inclusions in sandstone represent hidden oil shows. The frequency of quartz grains containing these inclusions (GOI number) reflects maximum palaeo-oil saturation irrespective of the present fluid phase. In this way fluid inclusion data can be used to both identify palaeo-oil columns and to map original oil water contacts (OWC) in wells where oil has been displaced by later gas charge. Studies conducted on gas fields from the North West Shelf of Australia have shown that substantial oil columns were once present. Moreover, detailed GOI mapping has been used to define the location of the original OWC in these reservoirs allowing the height of the palaeo-column to be determined and an estimate to be made of original oil in place (OOIP). At Oliver-1 in the Timor Sea the reservoir is presently filled to spill with a 164m gas, and 14.5m oil, column. GOI mapping has, however, delineated a 96m thick palaeo-oil column within the gas leg. This is almost seven times thicker than the present oil leg which suggests that perhaps 170-190 million barrels of oil were displaced from this structure. In the Pepper gas field in the Carnarvon Basin GOI mapping has demonstrated the presence of a gross palaeo-oil column between 15 and 30 m thick, suggesting that between about 50 and 70 million barrels of oil has been displaced. This is more oil than that reservoired in any of the surrounding oil discoveries, which emphasizes the importance, from an exploration standpoint, of defining these remigration pathways.

  11. Quantitative evaluation of oil-leg potential in gas reservoirs

    SciTech Connect

    Lisk, M.; Krieger, F.W.; Eadington, P.J. ); O'Brien, G.W. )

    1996-01-01

    Oil bearing fluid inclusions in sandstone represent hidden oil shows. The frequency of quartz grains containing these inclusions (GOI number) reflects maximum palaeo-oil saturation irrespective of the present fluid phase. In this way fluid inclusion data can be used to both identify palaeo-oil columns and to map original oil water contacts (OWC) in wells where oil has been displaced by later gas charge. Studies conducted on gas fields from the North West Shelf of Australia have shown that substantial oil columns were once present. Moreover, detailed GOI mapping has been used to define the location of the original OWC in these reservoirs allowing the height of the palaeo-column to be determined and an estimate to be made of original oil in place (OOIP). At Oliver-1 in the Timor Sea the reservoir is presently filled to spill with a 164m gas, and 14.5m oil, column. GOI mapping has, however, delineated a 96m thick palaeo-oil column within the gas leg. This is almost seven times thicker than the present oil leg which suggests that perhaps 170-190 million barrels of oil were displaced from this structure. In the Pepper gas field in the Carnarvon Basin GOI mapping has demonstrated the presence of a gross palaeo-oil column between 15 and 30 m thick, suggesting that between about 50 and 70 million barrels of oil has been displaced. This is more oil than that reservoired in any of the surrounding oil discoveries, which emphasizes the importance, from an exploration standpoint, of defining these remigration pathways.

  12. Low permeability Neogene lithofacies in Northern Croatia as potential unconventional hydrocarbon reservoirs

    NASA Astrophysics Data System (ADS)

    Malvić, Tomislav; Sučić, Antonija; Cvetković, Marko; Resanović, Filip; Velić, Josipa

    2014-06-01

    We present two examples of describing low permeability Neogene clastic lithofacies to outline unconventional hydrocarbon lithofacies. Both examples were selected from the Drava Depression, the largest macrostructure of the Pannonian Basin System located in Croatia. The first example is the Beničanci Field, the largest Croatian hydrocarbon reservoir discovered in Badenian coarse-grained clastics that consists mostly of breccia. The definition of low permeability lithofacies is related to the margins of the existing reservoir, where the reservoir lithology changed into a transitional one, which is mainly depicted by the marlitic sandstones. However, calculation of the POS (probability of success of new hydrocarbons) shows critical geological categories where probabilities are lower than those in the viable reservoir with proven reserves. Potential new hydrocarbon volumes are located in the structural margins, along the oil-water contact, with a POS of 9.375%. These potential reserves in those areas can be classified as probable. A second example was the Cremušina Structure, where a hydrocarbon reservoir was not proven, but where the entire structure has been transferred onto regional migration pathways. The Lower Pontian lithology is described from well logs as fine-grained sandstones with large sections of silty or marly clastics. As a result, the average porosity is low for conventional reservoir classification (10.57%). However, it is still an interesting case for consideration as a potentially unconventional reservoir, such as the "tight" sandstones.

  13. Clastic depositional styles and reservoir potential of Mediterranean basins

    SciTech Connect

    Bouma, A.H. )

    1990-05-01

    A variety of tectonic styles and activities throughout the late Mesozoic and younger epochs influenced sediment transport to the Mediterranean basins and, consequently, the approach needed to finding reservoir-type clastics. The style of the present-day basins varies from west to east, with large basinal depressions and continental rises in the western province, more elongate shapes in the central area, and numerous small basins and trenches in the eastern Mediterranean. In general terms, all these basins contain a similar fill: a deep-water sequence older than late Miocene, overlain by upper Miocene evaporites, and topped by Pliocene-Quaternary clastics. The exact type of fill depends on several factors, including proximity to the sediment source, climatic conditions, subsidence and tectonic activity, and tectono-eustatic or glacio-eustatic oscillations. Investigations on many of the clastic reservoirs in Mediterranean basins should emphasize submarine fans. The modern Mediterranean Sea contains several mid-sized fans (Rhone, Ebro, Valencia, and Nile fans) and many small ones (e.g., Crati Fan). There are several well-studied Tertiary subsurface and outcropping turbidite systems. The concept of deep-water marine sands, and many of the initial studies, began with some of the now classic outcrops in Italy, France, and Spain. A well-integrated study of both modern and ancient turbidite series is needed to construct basic exploration models for the Mediterranean region. 9 figs., 1 tab.

  14. Identification and Assessment of Potential Water Quality Impact Factors for Drinking-Water Reservoirs

    PubMed Central

    Gu, Qing; Deng, Jinsong; Wang, Ke; Lin, Yi; Li, Jun; Gan, Muye; Ma, Ligang; Hong, Yang

    2014-01-01

    Various reservoirs have been serving as the most important drinking water sources in Zhejiang Province, China, due to the uneven distribution of precipitation and severe river pollution. Unfortunately, rapid urbanization and industrialization have been continuously challenging the water quality of the drinking-water reservoirs. The identification and assessment of potential impacts is indispensable in water resource management and protection. This study investigates the drinking water reservoirs in Zhejiang Province to better understand the potential impact on water quality. Altogether seventy-three typical drinking reservoirs in Zhejiang Province encompassing various water storage levels were selected and evaluated. Using fifty-two reservoirs as training samples, the classification and regression tree (CART) method and sixteen comprehensive variables, including six sub-sets (land use, population, socio-economy, geographical features, inherent characteristics, and climate), were adopted to establish a decision-making model for identifying and assessing their potential impacts on drinking-water quality. The water quality class of the remaining twenty-one reservoirs was then predicted and tested based on the decision-making model, resulting in a water quality class attribution accuracy of 81.0%. Based on the decision rules and quantitative importance of the independent variables, industrial emissions was identified as the most important factor influencing the water quality of reservoirs; land use and human habitation also had a substantial impact on water quality. The results of this study provide insights into the factors impacting the water quality of reservoirs as well as basic information for protecting reservoir water resources. PMID:24919129

  15. Treponemes Detected in Digital Dermatitis Lesions in Brazilian Dairy Cattle and Possible Host Reservoirs of Infection

    PubMed Central

    Nascimento, Ligia Valéria; Mauerwerk, Marlise Teresinha; dos Santos, Cibelli Lopes; de Barros Filho, Ivan Roque; Birgel Júnior, Eduardo Harry; Madeira, Humberto Maciel França

    2015-01-01

    The main pathogenic treponemes causing bovine digital dermatitis were identified from 17 infected herds in southern Brazil for the first time in this study using PCR. We did not find a relationship between treponeme phylogroup composition and clinical classification. Treponema phagedenis was present in all lesions. Rumen fluid was implicated as a reservoir location for these pathogens. PMID:25788552

  16. Development of a molecular tool for the identification of Leishmania reservoir hosts by blood meal analysis in the insect vectors.

    PubMed

    Haouas, Najoua; Pesson, Bernard; Boudabous, Raja; Dedet, Jean-Pierre; Babba, Hamouda; Ravel, Christophe

    2007-12-01

    The transmission of parasites of the genus Leishmania involves a large diversity of mammalian reservoir hosts. However, many of these are yet to be identified, mainly in isolated biotopes such as the Amazonian rain forest. Furthermore, the trophic preferences of insect vectors have major epidemiologic implications. In this study, we developed a molecular tool for the identification of blood meals of phlebotomine sand flies. This assay is based on specific amplification and sequencing of the blood meal-derived single copy prepronociceptin (PNOC) gene, which is used as a target in phylogenetic studies of mammals. Sand flies were identified simultaneously with the blood-meal identification, using molecular analysis of a ribosomal locus. After a systematic assessment of the sensitivity and specificity of polymerase chain reaction amplification of the PNOC gene using human fed sand flies, the assay was tested on wild-caught sand flies. This work has important implications for the discovery of new Leishmania reservoir hosts and for a better understanding of complex parasite life cycles. PMID:18165521

  17. Economic potential and optimum steamflood strategies for trough reservoirs of San Joaquin Valley, California

    SciTech Connect

    Hong, K.C.; Use, D.J.

    1995-12-31

    Many trough reservoirs in the Western San Joaquin Valley, California, remain undeveloped because reserve bases are relatively small and occur in areas where thermal recovery activities have been low. Reservoir models with different configurations and reserve bases were used to compare the economic potential of these reservoirs and to develop guidelines for selecting reservoirs that can be economically exploited. The models were also used for determining the optimum steamflood strategies for the selected reservoirs. The study showed that, for a trough reservoir to be an economical prospect, it should contain a minimum oil-in-place of 300 MSTB per pattern length along the trough between the synclinal axis and the gas-oil contact. Optimum steamflood strategy for such reservoirs includes: (1) placing the injector away from the synclinal axis and gas-oil contact, (2) having a row of producers updip from the injector and another near the synclinal axis, (3) starting the steamflood with an intermediate rate and high quality of steam, and (4) shutting-in steam injection after 5.5 years of continuous injection at a constant rate. This strategy can result in an annual rate of return of 20%.

  18. Host feeding patterns of established and potential mosquito vectors of West Nile virus in the eastern United States.

    PubMed

    Apperson, Charles S; Hassan, Hassan K; Harrison, Bruce A; Savage, Harry M; Aspen, Stephen E; Farajollahi, Ary; Crans, Wayne; Daniels, Thomas J; Falco, Richard C; Benedict, Mark; Anderson, Michael; McMillen, Larry; Unnasch, Thomas R

    2004-01-01

    An important variable in determining the vectorial capacity of mosquito species for arthropod-borne infections is the degree of contact of the vector and the vertebrate reservoir. This parameter can be estimated by examining the host-feeding habits of vectors. Serological and polymerase chain reaction based methods have been used to study the host-feedings patterns of 21 mosquito species from New York, New Jersey, and Tennessee, 19 of which previously have been found infected with West Nile virus. Mammalophilic mosquito species in New Jersey and New York fed primarily upon white-tailed deer, while those from Memphis, Tennessee, fed mainly upon domestic dogs. A total of 24 different avian host species were detected among the avian-derived blood meals. American Robin, Northern Cardinal, Northern Mockingbird, Tufted Titmouse, and Brown-headed Cowbird were common avian hosts, while blood meals derived from the American Crow were relatively rare. Although the majority of common host species were potentially among the most abundant birds at each location, the proportion of blood meals from the most commonly fed upon avian species was greater than was predicted based upon the likely abundance of these species alone. These findings suggest that vector species for West Nile virus may preferentially feed upon certain avian hosts. PMID:15018775

  19. Massive stars formed in atomic hydrogen reservoirs: H I observations of gamma-ray burst host galaxies

    NASA Astrophysics Data System (ADS)

    Michałowski, M. J.; Gentile, G.; Hjorth, J.; Krumholz, M. R.; Tanvir, N. R.; Kamphuis, P.; Burlon, D.; Baes, M.; Basa, S.; Berta, S.; Castro Cerón, J. M.; Crosby, D.; D'Elia, V.; Elliott, J.; Greiner, J.; Hunt, L. K.; Klose, S.; Koprowski, M. P.; Le Floc'h, E.; Malesani, D.; Murphy, T.; Nicuesa Guelbenzu, A.; Palazzi, E.; Rasmussen, J.; Rossi, A.; Savaglio, S.; Schady, P.; Sollerman, J.; de Ugarte Postigo, A.; Watson, D.; van der Werf, P.; Vergani, S. D.; Xu, D.

    2015-10-01

    Long gamma-ray bursts (GRBs), among the most energetic events in the Universe, are explosions of massive and short-lived stars, so they pinpoint locations of recent star formation. However, several GRB host galaxies have recently been found to be deficient in molecular gas (H2), believed to be the fuel of star formation. Moreover, optical spectroscopy of GRB afterglows implies that the molecular phase constitutes only a small fraction of the gas along the GRB line of sight. Here we report the first ever 21 cm line observations of GRB host galaxies, using the AustraliaTelescope Compact Array, implying high levels of atomic hydrogen (H i), which suggests that the connection between atomic gas and star formation is stronger than previously thought. In this case, it is possible that star formation is directly fuelled by atomic gas (or that the H i-to-H2 conversion is very efficient, which rapidly exhaust molecular gas), as has been theoretically shown to be possible. This can happen in low-metallicity gas near the onset of star formation because cooling of gas (necessary for star formation) is faster than the H i-to-H2 conversion. Indeed, large atomic gas reservoirs, together with low molecular gas masses, stellar, and dust masses are consistent with GRB hosts being preferentially galaxies which have very recently started a star formation episode after accreting metal-poor gas from the intergalactic medium. This provides a natural route for forming GRBs in low-metallicity environments. The gas inflow scenario is also consistent with the existence of the companion H I object with no optical counterpart ~19 kpc from the GRB 060505 host, and with the fact that the H I centroids of the GRB 980425 and 060505 hosts do not coincide with optical centres of these galaxies, but are located close to the GRB positions.

  20. Inverse modelling of the reversely magnetized, shallow plumbing system hosting oil reservoirs of the Auca Mahuida volcano (Payeina retroarc, Neuquén Basin, Argentina)

    NASA Astrophysics Data System (ADS)

    Paine, John; De Ritis, Riccardo; Ventura, Guido; Longo, Mariana; Ravat, Dhananjay; Speranza, Fabio; Chiappini, Massimo

    2016-02-01

    The Auca Mahuida volcano (2.03-0.88 Ma) located east of the Andean thrust front in the Neuquén basin (Argentina) hosts an oil system of thermogenic origin and is affected by the NW-SE striking-faults. Intrusive bodies and the underlying Jurassic sediments constitute the reservoir rocks. Aeromagnetic data collected in the Auca Mahuida area detected multiple dipolar magnetic anomalies, many of which have reverse polarity. Palaeomagnetic measurements on rock samples collected in the field together with available age determinations indicate that the reversely magnetized sources were mainly emplaced during the Matuyama reverse polarity chron while the normal polarity sources were emplaced during the Olduvai and/or Jaramillo subchrons. The location and geometry of the intrusive bodies is poorly known and the customary magnetic inversion is rendered difficult because of multiple natural remanent magnetization directions. To address these difficulties, a voxel inversion was applied to model the vector residual magnetic intensity (VRMI) transformation of the observed total magnetic intensity data. The modelling showed a 1.5 km deep, subcircular ring-shaped intrusion below the summit of the volcano and a series of NW-SE elongated, fault-controlled intrusive bodies to depths up to 3-4 km. Our results show that magnetic data and VRMI modelling help resolve the geometry of the shallow plumbing system of volcanoes with remanently magnetized sources, and estimate the depth and geometry of potential oil reservoirs in volcanic areas.

  1. Evaluation of Gas Production Potential of Hydrate Deposits in Alaska North Slope using Reservoir Simulations

    NASA Astrophysics Data System (ADS)

    Nandanwar, M.; Anderson, B. J.

    2015-12-01

    Over the past few decades, the recognition of the importance of gas hydrates as a potential energy resource has led to more and more exploration of gas hydrate as unconventional source of energy. In 2002, U.S. Geological Survey (USGS) started an assessment to conduct a geology-based analysis of the occurrences of gas hydrates within northern Alaska. As a result of this assessment, many potential gas hydrate prospects were identified in the eastern National Petroleum Reserve Alaska (NPRA) region of Alaska North Slope (ANS) with total gas in-place of about 2 trillion cubic feet. In absence of any field test, reservoir simulation is a powerful tool to predict the behavior of the hydrate reservoir and the amount of gas that can be technically recovered using best suitable gas recovery technique. This work focuses on the advanced evaluation of the gas production potential of hydrate accumulation in Sunlight Peak - one of the promising hydrate fields in eastern NPRA region using reservoir simulations approach, as a part of the USGS gas hydrate development Life Cycle Assessment program. The main objective of this work is to develop a field scale reservoir model that fully describes the production design and the response of hydrate field. Due to the insufficient data available for this field, the distribution of the reservoir properties (such as porosity, permeability and hydrate saturation) are approximated by correlating the data from Mount Elbert hydrate field to obtain a fully heterogeneous 3D reservoir model. CMG STARS is used as a simulation tool to model multiphase, multicomponent fluid flow and heat transfer in which an equilibrium model of hydrate dissociation was used. Production of the gas from the reservoir is carried out for a period of 30 years using depressurization gas recovery technique. The results in terms of gas and water rate profiles are obtained and the response of the reservoir to pressure and temperature changes due to depressurization and hydrate

  2. A light carbon reservoir recorded in zircon-hosted diamond from the Jack Hills.

    PubMed

    Nemchin, Alexander A; Whitehouse, Martin J; Menneken, Martina; Geisler, Thorsten; Pidgeon, Robert T; Wilde, Simon A

    2008-07-01

    The recent discovery of diamond-graphite inclusions in the Earth's oldest zircon grains (formed up to 4,252 Myr ago) from the Jack Hills metasediments in Western Australia provides a unique opportunity to investigate Earth's earliest known carbon reservoir. Here we report ion microprobe analyses of the carbon isotope composition of these diamond-graphite inclusions. The observed delta(13)C(PDB) values (expressed using the PeeDee Belemnite standard) range between -5 per mil and -58 per mil with a median of -31 per mil. This extends beyond typical mantle values of around -6 per mil to values observed in metamorphic and some eclogitic diamonds that are interpreted to reflect deep subduction of low-delta(13)C(PDB) biogenic surface carbon. Low delta(13)C(PDB) values may also be produced by inorganic chemical reactions, and therefore are not unambiguous evidence for life on Earth as early as 4,250 Myr ago. Regardless, our results suggest that a low-delta(13)C(PDB) reservoir may have existed on the early Earth. PMID:18596808

  3. Infectiousness of Sylvatic and Synanthropic Small Rodents Implicates a Multi-host Reservoir of Leishmania (Viannia) braziliensis

    PubMed Central

    F. Brito, Maria E.; Carvalho, Francisco G.; Carvalho, Ana Waléria S.; Soares, Fábia; Carvalho, Silvia M.; Costa, Pietra L.; Zampieri, Ricardo; Floeter-Winter, Lucile M.; Shaw, Jeffrey J.; Brandão-Filho, Sinval P.

    2015-01-01

    Background The possibility that a multi-host wildlife reservoir is responsible for maintaining transmission of Leishmania (Viannia) braziliensis causing human cutaneous and mucocutaneous leishmaniasis is tested by comparative analysis of infection progression and infectiousness to sandflies in rodent host species previously shown to have high natural infection prevalences in both sylvatic or/and peridomestic habitats in close proximity to humans in northeast Brazil. Methods The clinical and parasitological outcomes, and infectiousness to sandflies, were observed in 54 colonized animals of three species (18 Necromys lasiurus, 18 Nectomys squamipes and 18 Rattus rattus) experimentally infected with high (5.5×106/ml) or low (2.8×105/ml) dose L. (V.) braziliensis (MBOL/BR/2000/CPqAM95) inoculum. Clinical signs of infection were monitored daily. Whole animal xenodiagnoses were performed 6 months post inoculation using Lutzomyia longipalpis originating from flies caught in Passira, Pernambuco, after this parasite evaluation was performed at necropsy. Heterogeneities in Leishmania parasite loads were measured by quantitative PCR in ear skin, liver and spleen tissues. Results All three rodent species proved to establish infection characterized by short-term self-resolving skin lesions, located on ears and tail but not on footpads (one site of inoculation), and variable parasite loads detected in all three tissues with maximum burdens of 8.1×103 (skin), 2.8×103 (spleen), and 8.9×102 (liver). All three host species, 18/18 N. lasiurus, 10/18 N. squamipes and 6/18 R. rattus, also proved infectious to sandflies in cross-sectional study. R. rattus supported significantly lower tissue parasite loads compared to those in N. lasiurus and N. squamipes, and N. lasiurus appeared to be more infectious, on average, than either N. squamipes or R. rattus. Conclusions A multi-host reservoir of cutaneous leishmaniasis is indicated in this region of Brazil, though with apparent

  4. Sensitivity of Lyme Borreliosis Spirochetes to Serum Complement of Regular Zoo Animals: Potential Reservoir Competence of Some Exotic Vertebrates.

    PubMed

    Ticha, Lucie; Golovchenko, Maryna; Oliver, James H; Grubhoffer, Libor; Rudenko, Nataliia

    2016-01-01

    Reaction of vertebrate serum complement with different Borrelia burgdorferi sensu lato species is used as a basis in determining reservoir hosts among domesticated and wild animals. Borrelia burgdorferi sensu stricto, Borrelia garinii, and Borrelia afzelii were tested for their sensitivity to sera of exotic vertebrate species housed in five zoos located in the Czech Republic. We confirmed that different Borrelia species have different sensitivity to host serum. We found that tolerance to Borrelia infection possessed by hosts might differ among individuals of the same genera or species and is not affected by host age or sex. Of all zoo animals included in our study, carnivores demonstrated the highest apparent reservoir competency for Lyme borreliosis spirochetes. We showed that selected exotic ungulate species are tolerant to Borrelia infection. For the first time we showed the high tolerance of Siamese crocodile to Borrelia as compared to the other studied reptile species. While exotic vertebrates present a limited risk to the European human population as reservoirs for the causative agents of Lyme borreliosis, cases of incidental spillover infection could lead to successful replication of the pathogens in a new host, changing the status of selected exotic species and their role in pathogen emergence or maintenance. The question if being tolerant to pathogen means to be a competent reservoir host still needs an answer, simply because the majority of exotic animals might never be exposed to spirochetes in their natural environment. PMID:26783940

  5. Potential hazards of compressed air energy storage in depleted natural gas reservoirs.

    SciTech Connect

    Cooper, Paul W.; Grubelich, Mark Charles; Bauer, Stephen J.

    2011-09-01

    This report is a preliminary assessment of the ignition and explosion potential in a depleted hydrocarbon reservoir from air cycling associated with compressed air energy storage (CAES) in geologic media. The study identifies issues associated with this phenomenon as well as possible mitigating measures that should be considered. Compressed air energy storage (CAES) in geologic media has been proposed to help supplement renewable energy sources (e.g., wind and solar) by providing a means to store energy when excess energy is available, and to provide an energy source during non-productive or low productivity renewable energy time periods. Presently, salt caverns represent the only proven underground storage used for CAES. Depleted natural gas reservoirs represent another potential underground storage vessel for CAES because they have demonstrated their container function and may have the requisite porosity and permeability; however reservoirs have yet to be demonstrated as a functional/operational storage media for compressed air. Specifically, air introduced into a depleted natural gas reservoir presents a situation where an ignition and explosion potential may exist. This report presents the results of an initial study identifying issues associated with this phenomena as well as possible mitigating measures that should be considered.

  6. Potential Triassic and Jurassic CO2 Storage Reservoirs in the Skagerrak Area

    NASA Astrophysics Data System (ADS)

    Baig, I.; Aagaard, P.; Fawad, M.; Sassier, C.; Faleide, J. I.; Jahren, J.; Gabrielsen, R. H.; Nielsen, L. H.; Kristensen, L.; Bergmo, P. E. S.

    2012-04-01

    pseudo-well was generated about 50 km north of an existing well in Denmark with the objective to predict facies. A depositional model with sediments sourced from north was assumed. A 50% thickness erosion of highstand sandstones was assumed at each cycle when sea level fell during a low stand. The removed thickness was compensated by non-reservoir transgressive systems tracts sediments (possible aggrading floodplain or lagoonal sediments). As good reservoir porosities (~20%) were found in wells in the south, porosities towards north are expected to be higher due to shallower depth of burial. The sealing properties of transgressive shales overlying the low stand sandstones are also important in local trapping and lateral distribution of the injected CO2. Furthermore the intercalation of shaly layers and permeability heterogeneities developed in prograding sand systems may provide additional trapping capacity to the reservoir. This geologic model is one of the likely scenarios that favors Gassum Formation as a potential CO2 storage reservoir in Skagerrak area and warrant to evaluate the reservoir using other possible scenarios.

  7. Host Reticulocytes Provide Metabolic Reservoirs That Can Be Exploited by Malaria Parasites

    PubMed Central

    Srivastava, Anubhav; Creek, Darren J.; Evans, Krystal J.; De Souza, David; Schofield, Louis; Müller, Sylke; Barrett, Michael P.; McConville, Malcolm J.; Waters, Andrew P.

    2015-01-01

    Human malaria parasites proliferate in different erythroid cell types during infection. Whilst Plasmodium vivax exhibits a strong preference for immature reticulocytes, the more pathogenic P. falciparum primarily infects mature erythrocytes. In order to assess if these two cell types offer different growth conditions and relate them to parasite preference, we compared the metabolomes of human and rodent reticulocytes with those of their mature erythrocyte counterparts. Reticulocytes were found to have a more complex, enriched metabolic profile than mature erythrocytes and a higher level of metabolic overlap between reticulocyte resident parasite stages and their host cell. This redundancy was assessed by generating a panel of mutants of the rodent malaria parasite P. berghei with defects in intermediary carbon metabolism (ICM) and pyrimidine biosynthesis known to be important for P. falciparum growth and survival in vitro in mature erythrocytes. P. berghei ICM mutants (pbpepc-, phosphoenolpyruvate carboxylase and pbmdh-, malate dehydrogenase) multiplied in reticulocytes and committed to sexual development like wild type parasites. However, P. berghei pyrimidine biosynthesis mutants (pboprt-, orotate phosphoribosyltransferase and pbompdc-, orotidine 5′-monophosphate decarboxylase) were restricted to growth in the youngest forms of reticulocytes and had a severe slow growth phenotype in part resulting from reduced merozoite production. The pbpepc-, pboprt- and pbompdc- mutants retained virulence in mice implying that malaria parasites can partially salvage pyrimidines but failed to complete differentiation to various stages in mosquitoes. These findings suggest that species-specific differences in Plasmodium host cell tropism result in marked differences in the necessity for parasite intrinsic metabolism. These data have implications for drug design when targeting mature erythrocyte or reticulocyte resident parasites. PMID:26042734

  8. Isolation of Ehrlichia chaffeensis from wild white-tailed deer (Odocoileus virginianus) confirms their role as natural reservoir hosts.

    PubMed Central

    Lockhart, J M; Davidson, W R; Stallknecht, D E; Dawson, J E; Howerth, E W

    1997-01-01

    Field and experimental studies have implicated white-tailed deer (Odocoileus virginianus) as probable reservoir hosts for Ehrlichia chaffeensis, the causative agent of human monocytic ehrlichiosis, but natural infection in deer has not been confirmed through isolation of E. chaffeensis. Thirty-five white-tailed deer collected from three Amblyomma americanum-infested populations in Georgia were examined for evidence of E. chaffeensis infection by serologic, molecular, cell culture, and xenodiagnostic methods. Twenty-seven deer (77%) had E. chaffeensis-reactive indirect fluorescent-antibody assay titers of > or = 1:64; and the blood, spleens, or lymph nodes of seven (20%) deer were positive in a nested PCR assay with E. chaffeensis-specific primers. E. chaffeensis was isolated in DH82 cell cultures from the blood of five (14%) deer, including two deer that were PCR negative. Combination of culture and PCR results indicated that six (17%) deer were probably rickettsemic and that nine (26%) were probably infected. Restriction digestion of PCR products amplified from deer tissues and cell culture isolates resulted in a banding pattern consistent with the E. chaffeensis 16S rRNA gene sequence. The sequences of all PCR products from deer tissues or cell culture isolates were identical to the sequence of the Arkansas type strain of E. chaffeensis. Xenodiagnosis with C3H mice inoculated intraperitoneally with deer blood, spleen, or lymph node suspensions was unsuccessful. When viewed in the context of previous studies, these findings provide strong evidence that E. chaffeensis is maintained in nature primarily by a tick vector-vertebrate reservoir system consisting of lone star ticks and white-tailed deer. PMID:9196173

  9. Assessment of Folsom Lake response to historical and potential future climate scenarios. 2. Reservoir management

    NASA Astrophysics Data System (ADS)

    Yao, H.; Georgakakos, A.

    2001-08-01

    An integrated forecast-decision system for Folsom Lake (California) is developed and used to assess the sensitivity of reservoir performance to various forecast-management schemes under historical and future climate scenarios. The assessments are based on various combinations of inflow forecasting models, decision rules, and climate scenarios. The inflow forecasting options include operational forecasts, historical analog ensemble forecasts, hydrologic ensemble forecasts, GCM-conditioned hydrologic ensemble forecasts, and perfect forecasts. Reservoir management is based on either heuristic rule curves or a decision system which includes three coupled models pertinent to turbine load dispatching, short-range energy generation scheduling, and long/mid-range reservoir management. The climate scenarios are based on historical inflow realizations, potential inflow realizations generated by General Circulation Models assuming no CO 2 increase, and potential inflow realizations assuming 1% CO 2 annual increase. The study demonstrates that (1) reliable inflow forecasts and adaptive decision systems can substantially benefit reservoir performance and (2) dynamic operational procedures can be effective climate change coping strategies.

  10. Spatio-temporal Analysis of the Genetic Diversity of Arctic Rabies Viruses and Their Reservoir Hosts in Greenland

    PubMed Central

    Hanke, Dennis; Freuling, Conrad M.; Fischer, Susanne; Hueffer, Karsten; Hundertmark, Kris; Nadin-Davis, Susan; Marston, Denise; Fooks, Anthony R.; Bøtner, Anette; Mettenleiter, Thomas C.; Beer, Martin; Rasmussen, Thomas B.; Müller, Thomas F.; Höper, Dirk

    2016-01-01

    There has been limited knowledge on spatio-temporal epidemiology of zoonotic arctic fox rabies among countries bordering the Arctic, in particular Greenland. Previous molecular epidemiological studies have suggested the occurrence of one particular arctic rabies virus (RABV) lineage (arctic-3), but have been limited by a low number of available samples preventing in-depth high resolution phylogenetic analysis of RABVs at that time. However, an improved knowledge of the evolution, at a molecular level, of the circulating RABVs and a better understanding of the historical perspective of the disease in Greenland is necessary for better direct control measures on the island. These issues have been addressed by investigating the spatio-temporal genetic diversity of arctic RABVs and their reservoir host, the arctic fox, in Greenland using both full and partial genome sequences. Using a unique set of 79 arctic RABV full genome sequences from Greenland, Canada, USA (Alaska) and Russia obtained between 1977 and 2014, a description of the historic context in relation to the genetic diversity of currently circulating RABV in Greenland and neighboring Canadian Northern territories has been provided. The phylogenetic analysis confirmed delineation into four major arctic RABV lineages (arctic 1–4) with viruses from Greenland exclusively grouping into the circumpolar arctic-3 lineage. High resolution analysis enabled distinction of seven geographically distinct subclades (3.I – 3.VII) with two subclades containing viruses from both Greenland and Canada. By combining analysis of full length RABV genome sequences and host derived sequences encoding mitochondrial proteins obtained simultaneously from brain tissues of 49 arctic foxes, the interaction of viruses and their hosts was explored in detail. Such an approach can serve as a blueprint for analysis of infectious disease dynamics and virus-host interdependencies. The results showed a fine-scale spatial population structure

  11. Spatio-temporal Analysis of the Genetic Diversity of Arctic Rabies Viruses and Their Reservoir Hosts in Greenland.

    PubMed

    Hanke, Dennis; Freuling, Conrad M; Fischer, Susanne; Hueffer, Karsten; Hundertmark, Kris; Nadin-Davis, Susan; Marston, Denise; Fooks, Anthony R; Bøtner, Anette; Mettenleiter, Thomas C; Beer, Martin; Rasmussen, Thomas B; Müller, Thomas F; Höper, Dirk

    2016-07-01

    There has been limited knowledge on spatio-temporal epidemiology of zoonotic arctic fox rabies among countries bordering the Arctic, in particular Greenland. Previous molecular epidemiological studies have suggested the occurrence of one particular arctic rabies virus (RABV) lineage (arctic-3), but have been limited by a low number of available samples preventing in-depth high resolution phylogenetic analysis of RABVs at that time. However, an improved knowledge of the evolution, at a molecular level, of the circulating RABVs and a better understanding of the historical perspective of the disease in Greenland is necessary for better direct control measures on the island. These issues have been addressed by investigating the spatio-temporal genetic diversity of arctic RABVs and their reservoir host, the arctic fox, in Greenland using both full and partial genome sequences. Using a unique set of 79 arctic RABV full genome sequences from Greenland, Canada, USA (Alaska) and Russia obtained between 1977 and 2014, a description of the historic context in relation to the genetic diversity of currently circulating RABV in Greenland and neighboring Canadian Northern territories has been provided. The phylogenetic analysis confirmed delineation into four major arctic RABV lineages (arctic 1-4) with viruses from Greenland exclusively grouping into the circumpolar arctic-3 lineage. High resolution analysis enabled distinction of seven geographically distinct subclades (3.I - 3.VII) with two subclades containing viruses from both Greenland and Canada. By combining analysis of full length RABV genome sequences and host derived sequences encoding mitochondrial proteins obtained simultaneously from brain tissues of 49 arctic foxes, the interaction of viruses and their hosts was explored in detail. Such an approach can serve as a blueprint for analysis of infectious disease dynamics and virus-host interdependencies. The results showed a fine-scale spatial population structure in

  12. Host pigments: potential facilitators of photosynthesis in coral symbioses.

    PubMed

    Dove, Sophie G; Lovell, Carli; Fine, Maoz; Deckenback, Jeffry; Hoegh-Guldberg, Ove; Iglesias-Prieto, Roberto; Anthony, Kenneth R N

    2008-11-01

    Reef-building corals occur as a range of colour morphs because of varying types and concentrations of pigments within the host tissues, but little is known about their physiological or ecological significance. Here, we examined whether specific host pigments act as an alternative mechanism for photoacclimation in the coral holobiont. We used the coral Montipora monasteriata (Forskål 1775) as a case study because it occurs in multiple colour morphs (tan, blue, brown, green and red) within varying light-habitat distributions. We demonstrated that two of the non-fluorescent host pigments are responsive to changes in external irradiance, with some host pigments up-regulating in response to elevated irradiance. This appeared to facilitate the retention of antennal chlorophyll by endosymbionts and hence, photosynthetic capacity. Specifically, net P(max) Chl a(-1) correlated strongly with the concentration of an orange-absorbing non-fluorescent pigment (CP-580). This had major implications for the energetics of bleached blue-pigmented (CP-580) colonies that maintained net P(max) cm(-2) by increasing P(max) Chl a(-1). The data suggested that blue morphs can bleach, decreasing their symbiont populations by an order of magnitude without compromising symbiont or coral health. PMID:18643952

  13. Potential of ambient noise techniques to monitor reservoir dynamics at the St. Gallen geothermal site

    NASA Astrophysics Data System (ADS)

    Obermann, A.; Larose, E. F.; Wiemer, S.

    2014-12-01

    In the last decade two large geothermal energy projects were launched in Switzerland (Basel 2006, St Gallen 2013). Both of them were stopped after the occurrence of strongly felt earthquakes (Ml3.4 and 3.5, respectively). This illustrates that one of the key challenges for the use of deep geothermal energy remains to control the risk of inducing felt and potentially hazardous seismic events during the development and operation of an underground heat exchangers. Current monitoring techniques of induced seismicity, e.g. traffic light systems, attempt to forecast seismic hazard during and after stimulation based on observed seismicity and hydraulic data. A limitation of these techniques is their focus on seismic processes. We demonstrate the potential of ambient seismic noise correlation techniques to monitor aseismic reservoir dynamics related to the 2013 geothermal project in St. Gallen. In St. Gallen, reservoir characterization tests lead to an unexpected leakage of methane gas into the well. Well-head pressure rose rapidly and operators decided to prevent a possible well blow-out with counter-pressure. The result was an immediate increase of induced seismicity with a maximum event of Ml3.5. While the reservoir characterization was not accompanied by any significant induced seismicity that could have given an indication for the ongoing processes in the reservoir, ambient noise cross-correlations reveal a significant aseismic perturbation in the system that can be clearly linked to the stimulation tests. These additional constraints may help to better understand reservoir dynamics. We also discuss the future role of noise correlation based techniques for monitoring/mitigation purposes.

  14. Swelling and osmotic flow in a potential host rock

    NASA Astrophysics Data System (ADS)

    Horseman, S. T.; Harrington, J. F.; Noy, D. J.

    material. When immersed in distilled water, the cube swelled preferentially in a direction normal to bedding. Swelling was accompanied by visible opening of cracks. Volumetric strains of the clayshale during the swelling test were of the same order of magnitude as those during permeability testing. The presence of dilated cracks could explain the low membrane efficiency, since the dissociated ions of the salt would be able to diffuse through the crack network relatively unimpeded by electrostatic interactions with the clay mineral surfaces. The high compressibility and low membrane efficiency revealed by these experiments may be a consequence of fabric damage during sampling and specimen preparation or may actually be representative of the rock characteristics within the engineering disturbed zone (EDZ) of the tunnel niches. It is entirely possible that undisturbed rock remote from the excavations displays significantly lower compressibility and higher membrane efficiency. Even though the clayshale membrane in these experiments is inefficient, the results clearly demonstrate that Opalinus Clay is capable of supporting an osmotic flow of water. This has important implications in the specification, operation and interpretation of borehole tests aimed at the hydrogeological characterisation of this potential host rock. In addition the osmotic coupling term modifies the effective diffusion coefficient which should be accounted for when undertaking safety assessments.

  15. Micro- and macro-scale petrophysical characterization of potential reservoir units from the Northern Israel

    NASA Astrophysics Data System (ADS)

    Haruzi, Peleg; Halisch, Matthias; Katsman, Regina; Waldmann, Nicolas

    2016-04-01

    Lower Cretaceous sandstone serves as hydrocarbon reservoir in some places over the world, and potentially in Hatira formation in the Golan Heights, northern Israel. The purpose of the current research is to characterize the petrophysical properties of these sandstone units. The study is carried out by two alternative methods: using conventional macroscopic lab measurements, and using CT-scanning, image processing and subsequent fluid mechanics simulations at a microscale, followed by upscaling to the conventional macroscopic rock parameters (porosity and permeability). Comparison between the upscaled and measured in the lab properties will be conducted. The best way to upscale the microscopic rock characteristics will be analyzed based the models suggested in the literature. Proper characterization of the potential reservoir will provide necessary analytical parameters for the future experimenting and modeling of the macroscopic fluid flow behavior in the Lower Cretaceous sandstone.

  16. New sylvatic hosts of Trypanosoma cruzi and their reservoir competence in the humid Chaco of Argentina: a longitudinal study.

    PubMed

    Orozco, M Marcela; Enriquez, Gustavo F; Alvarado-Otegui, Julián A; Cardinal, M Victoria; Schijman, Alejandro G; Kitron, Uriel; Gürtler, Ricardo E

    2013-05-01

    A four-year longitudinal study of the structure of sylvatic transmission cycles of Trypanosoma cruzi, reservoir host competence and parasite discrete typing units was conducted in a disturbed rural area of the humid Chaco in Argentina. Among 190 mammals examined by xenodiagnosis and polymerase chain reaction amplification, the composite prevalence of infection was substantially higher in Dasypus novemcinctus armadillos (57.7%) and Didelphis albiventris opossums (38.1%) than in Euphractus sexcinctus (20.0%), Tolypeutes matacus (12.5%), and Chaetophractus vellerosus (6.3%) armadillos. Trypanosoma cruzi was detected for the first time in Thylamys pusilla small opossums and in two unidentified small rodents. Infection was spatially aggregated only in armadillos. All Didelphis were infected with T. cruzi I and all armadillo species were infected with T. cruzi III, implying two distinct sylvatic cycles with no inputs from the domestic cycle. Dasypus armadillos and Didelphis opossums were much more infectious to vectors than other armadillos, small opossums, or rodents. PMID:23530075

  17. Infrastructure and mechanical properties of a fault zone in sandstone as an outcrop analogue of a potential geothermal reservoir

    NASA Astrophysics Data System (ADS)

    Bauer, J. F.; Meier, S.; Philipp, S. L.

    2013-12-01

    Due to high drilling costs of geothermal projects, it is economically sensible to assess the potential suitability of a reservoir prior to drilling. Fault zones are of particular importance, because they may enhance fluid flow, or be flow barriers, respectively, depending on their particular infrastructure. Outcrop analogue studies are useful to analyze the fault zone infrastructure and thereby increase the predictability of fluid flow behavior across fault zones in the corresponding deep reservoir. The main aims of the present study are to 1) analyze the infrastructure and the differences of fracture system parameters in fault zones and 2) determine the mechanical properties of the faulted rocks. We measure fracture frequencies as well as orientations, lengths and apertures and take representative rock samples for each facies to obtain Young's modulus, compressive and tensile strengths in the laboratory. Since fractures reduce the stiffnesses of in situ rock masses we use an inverse correlation of the number of discontinuities to calculate effective (in situ) Young's moduli to investigate the variation of mechanical properties in fault zones. In addition we determine the rebound hardness, which correlates with the compressive strength measured in the laboratory, with a 'Schmidt-Hammer' in the field because this allows detailed maps of mechanical property variations within fault zones. Here we present the first results for a fault zone in the Triassic Lower Bunter of the Upper Rhine Graben in France. The outcrop at Cleebourg exposes the damage zone of the footwall and a clear developed fault core of a NNW-SSE-striking normal fault. The approximately 15 m wide fault core consists of fault gouge, slip zones, deformation bands and host rock lenses. Intensive deformation close to the core led to the formation of a distal fault core, a 5 m wide zone with disturbed layering and high fracture frequency. The damage zone also contains more fractures than the host rock

  18. Host Defense Peptides from Asian Frogs as Potential Clinical Therapies

    PubMed Central

    Kumar, Vineeth T.V.; Holthausen, David; Jacob, Joshy; George, Sanil

    2015-01-01

    Host defense peptides (HDPs) are currently major focal points of medical research as infectious microbes are gaining resistance to existing drugs. They are effective against multi-drug resistant pathogens due to their unique primary target, biological membranes, and their peculiar mode of action. Even though HDPs from 60 Asian frog species belonging to 15 genera have been characterized, research into these peptides is at a very early stage. The purpose of this review is to showcase the status of peptide research in Asia. Here we provide a summary of HDPs from Asian frogs. PMID:27025618

  19. Host Selection of Potential West Nile Virus Vectors in Puerto Barrios, Guatemala, 2007

    PubMed Central

    Kading, Rebekah C.; Reiche, Ana Silvia Gonzalez; Morales-Betoulle, Maria Eugenia; Komar, Nicholas

    2013-01-01

    The selection of vertebrate hosts by Culex mosquitoes relative to West Nile virus (WNV) transmission in neotropical countries such as Guatemala is not described. This study determined the feeding patterns of Cx. quinquefasciatus and Cx. nigripalpus and estimated the relative contribution of two common and frequently infected wild bird species, Turdus grayi and Quiscalus mexicanus, to WNV transmission. Engorged mosquitoes were collected from rural and urban habitats after the dry and wet seasons in the Department of Izabal in 2007. Host selection by Cx. nigripalpus varied significantly between urban and rural habitats. Both Cx. quinquefasciatus and Cx. nigripalpus fed predominantly on chickens and other domestic animals. Blood meals from wild birds were rare, accounting for 1.1% of blood meals identified from Cx. quinquefasciatus and 6.5% of blood meals from Cx. nigripalpus. Transmission of WNV by these two mosquito species may be dampened by extensive feeding on reservoir-incompetent hosts. PMID:23208881

  20. Calcium Phosphate: A potential host for halide contaminated plutonium wastes.

    SciTech Connect

    Metcalfe, Brian L.; Donald, Ian W.; Fong, Shirley K.; Gerrard, Lee A.; Strachan, Denis M.; Scheele, Randall D.

    2009-07-06

    The presence of significant quantities of fluoride and chloride in four types of legacy wastes from plutonium pyrochemical reprocessing required the development of a new wasteform which could adequately immobilize the halides in addition to the Pu and Am. Using a simulant chloride-based waste (Type I waste) and Sm as the surrogate for the Pu3+ and Am3+ present in the waste, AWE developed a process which utilised Ca3(PO4)2 as the host material. The waste was successfully incorporated into two crystalline phases, chlorapatite, [Ca5(PO4)3Cl], and spodiosite, [Ca2(PO4)Cl]. Radioactive studies performed at PNNL with 239Pu and 241Am confirmed the process. A slightly modified version of the process in which CaHPO4 was used as the host was successful in immobilizing a more complex multi-cation oxide–based waste (Type II) which contained significant concentrations of Cl and F in addition to 239Pu and 241Am. This waste resulted in the formation of cation-doped whitlockite, Ca3-xMgx(PO4)2, β-calcium phosphate, β-Ca2P2O7 and chlor-fluorapatite rather than the chlorapatite and spodiosite formed with Type I waste.

  1. Wild boar (Sus scrofa) - reservoir host of Toxoplasma gondii, Neospora caninum and Anaplasma phagocytophilum in Slovakia.

    PubMed

    Reiterová, Katarína; Špilovská, Silvia; Blaňarová, Lucia; Derdáková, Markéta; Čobádiová, Andrea; Hisira, Vladimír

    2016-06-01

    In Central Europe the wild boar population is permanently growing and consequently Cf foodborne infections. In this study serological and molecular detection of Toxoplasma gondii and Neospora caninum in wild boars was evaluated. Moreover, same samples were screened for the presence and genetic variability of tick-borne bacterium Anaplasma phagocytophilum. Blood samples collected from 113 wild boars from Southern Slovakia were examined for antibodies to T. gondii by indirect and to N. caninum by competitive ELISA. The presence of parasitic DNA in blood samples was determined by standard or real time PCR techniques. Antibodies against T. gondii and N. caninum were detected in 45 (39.8%) and 38 (33.6%) animals, respectively. Females were more frequently infected for both pathogens than males. The high seropositivity against both coccidia indicates a permanent occurrence of these pathogens in the studied locality. T. gondii DNA was confirmed in five seropositive boars (4.4%) and N. caninum in 23 blood samples (20.4%). Three out of 23 N. caninum PCR positive animals did not show seropositivity. Three out of 113 blood samples of wild boars were positive for A. phagocytophilum (2.7%). The obtained A. phagocytophilum sequences were 100% identical with GenBankTM isolates from Slovak dog (KC985242); German horse (JF893938) or wild boar (EF143810) and red deer (EF143808) from Poland. Coinfections of T. gondii with N. caninum and N. caninum with A. phagocytophilum were detected in single cases. Results suggest a potential zoonotic risk of toxoplasmosis transmission to humans and the spread of neosporosis to farm animals. PMID:27078648

  2. Microclimate impacts survival and prevalence of Phytophthora ramorum in Umbellularia californica, a key reservoir host of sudden oak death in Northern California forests.

    PubMed

    DiLeo, Matthew V; Bostock, Richard M; Rizzo, David M

    2014-01-01

    Phytophthora ramorum, an invasive pathogen and the causal agent of Sudden Oak Death, has become established in mixed-evergreen and redwood forests in coastal northern California. While oak and tanoak mortality is the most visible indication of P. ramorum's presence, epidemics are largely driven by the presence of bay laurel (Umbellularia californica), a reservoir host that supports both prolific sporulation in the winter wet season and survival during the summer dry season. In order to better understand how over-summer survival of the pathogen contributes to variability in the severity of annual epidemics, we monitored the viability of P. ramorum leaf infections over three years along with coincident microclimate. The proportion of symptomatic bay laurel leaves that contained viable infections decreased during the first summer dry season and remained low for the following two years, likely due to the absence of conducive wet season weather during the study period. Over-summer survival of P. ramorum was positively correlated with high percent canopy cover, less negative bay leaf water potential and few days exceeding 30°C but was not significantly different between mixed-evergreen and redwood forest ecosystems. Decreased summer survival of P. ramorum in exposed locations and during unusually hot summers likely contributes to the observed spatiotemporal heterogeneity of P. ramorum epidemics. PMID:25098281

  3. New records with examples of potential host colonization events for hypopi (Acari: Hypoderatidae) from birds

    USGS Publications Warehouse

    Pence, Danny B.; Spalding, M.G.; Bergan, J.F.; Cole, R.A.

    1997-01-01

    New host, geographic records, or both are established for 14 species of hypoderatid deutonymphs from 14 species of birds in North America. Ten of these records are regarded as examples of a potential host colonization event where these hypopi have become established in hosts other than those with which they are normally associated. Herein, potential host colonization events by hypoderatid deutonymphs are regarded as more of an ecologically determined than physiologically specific phenomenon, often specifically related to sharing of nesting sites in the same rookeries by different host taxa. Neottialges ibisicola Young & Pence is placed as a junior synonym of Neottialges plegadicola Fain. The taxonomic status of Hypodectes propus from columbid versus ardeid hosts needs further study.

  4. The commensal infant gut meta-mobilome as a potential reservoir for persistent multidrug resistance integrons

    PubMed Central

    Ravi, Anuradha; Avershina, Ekaterina; Foley, Steven L.; Ludvigsen, Jane; Storrø, Ola; Øien, Torbjørn; Johnsen, Roar; McCartney, Anne L.; L’Abée-Lund, Trine M.; Rudi, Knut

    2015-01-01

    Despite the accumulating knowledge on the development and establishment of the gut microbiota, its role as a reservoir for multidrug resistance is not well understood. This study investigated the prevalence and persistence patterns of an integrase gene (int1), used as a proxy for integrons (which often carry multiple antimicrobial resistance genes), in the fecal microbiota of 147 mothers and their children sampled longitudinally from birth to 2 years. The study showed the int1 gene was detected in 15% of the study population, and apparently more persistent than the microbial community structure itself. We found int1 to be persistent throughout the first two years of life, as well as between mothers and their 2-year-old children. Metagenome sequencing revealed integrons in the gut meta-mobilome that were associated with plasmids and multidrug resistance. In conclusion, the persistent nature of integrons in the infant gut microbiota makes it a potential reservoir of mobile multidrug resistance. PMID:26507767

  5. The commensal infant gut meta-mobilome as a potential reservoir for persistent multidrug resistance integrons.

    PubMed

    Ravi, Anuradha; Avershina, Ekaterina; Foley, Steven L; Ludvigsen, Jane; Storrø, Ola; Øien, Torbjørn; Johnsen, Roar; McCartney, Anne L; L'Abée-Lund, Trine M; Rudi, Knut

    2015-01-01

    Despite the accumulating knowledge on the development and establishment of the gut microbiota, its role as a reservoir for multidrug resistance is not well understood. This study investigated the prevalence and persistence patterns of an integrase gene (int1), used as a proxy for integrons (which often carry multiple antimicrobial resistance genes), in the fecal microbiota of 147 mothers and their children sampled longitudinally from birth to 2 years. The study showed the int1 gene was detected in 15% of the study population, and apparently more persistent than the microbial community structure itself. We found int1 to be persistent throughout the first two years of life, as well as between mothers and their 2-year-old children. Metagenome sequencing revealed integrons in the gut meta-mobilome that were associated with plasmids and multidrug resistance. In conclusion, the persistent nature of integrons in the infant gut microbiota makes it a potential reservoir of mobile multidrug resistance. PMID:26507767

  6. A framework to gauge the epidemic potential of plant pathogens in environmental reservoirs: the example of kiwifruit canker.

    PubMed

    Bartoli, Claudia; Lamichhane, Jay Ram; Berge, Odile; Guilbaud, Caroline; Varvaro, Leonardo; Balestra, Giorgio M; Vinatzer, Boris A; Morris, Cindy E

    2015-02-01

    New economically important diseases on crops and forest trees emerge recurrently. An understanding of where new pathogenic lines come from and how they evolve is fundamental for the deployment of accurate surveillance methods. We used kiwifruit bacterial canker as a model to assess the importance of potential reservoirs of new pathogenic lineages. The current kiwifruit canker epidemic is at least the fourth outbreak of the disease on kiwifruit caused by Pseudomonas syringae in the mere 50 years in which this crop has been cultivated worldwide, with each outbreak being caused by different genetic lines of the bacterium. Here, we ask whether strains in natural (non-agricultural) environments could cause future epidemics of canker on kiwifruit. To answer this question, we evaluated the pathogenicity, endophytic colonization capacity and competitiveness on kiwifruit of P. syringae strains genetically similar to epidemic strains and originally isolated from aquatic and subalpine habitats. All environmental strains possessing an operon involved in the degradation of aromatic compounds via the catechol pathway grew endophytically and caused symptoms in kiwifruit vascular tissue. Environmental and epidemic strains showed a wide host range, revealing their potential as future pathogens of a variety of hosts. Environmental strains co-existed endophytically with CFBP 7286, an epidemic strain, and shared about 20 virulence genes, but were missing six virulence genes found in all epidemic strains. By identifying the specific gene content in genetic backgrounds similar to known epidemic strains, we developed criteria to assess the epidemic potential and to survey for such strains as a means of forecasting and managing disease emergence. PMID:24986268

  7. Efficacy of two rodenticides against Leishmania reservoir host rat (Psammomys obesus) in the rural area of Al-Ahsa Oasis, Saudi Arabia.

    PubMed

    Al-Mohammed, Hamdan I

    2010-12-01

    Zoonotic cutaneous leishmaniasis (ZCL) is a serious and increasing public health problem in many parts of Saudi Arabia. Rodent control operations are effective in destroying rodents and reducing the incidence of disease. This study tested the efficacy of zinc phosphide and fenacoum against the reservoir host Psammomys obesus rat. The results showed that both the rodenticides were significantly (P < 0.01) effective in reducing the number of active holes during one year of application. PMID:21268531

  8. Analysis of cathepsin and furin proteolytic enzymes involved in viral fusion protein activation in cells of the bat reservoir host.

    PubMed

    El Najjar, Farah; Lampe, Levi; Baker, Michelle L; Wang, Lin-Fa; Dutch, Rebecca Ellis

    2015-01-01

    Bats of different species play a major role in the emergence and transmission of highly pathogenic viruses including Ebola virus, SARS-like coronavirus and the henipaviruses. These viruses require proteolytic activation of surface envelope glycoproteins needed for entry, and cellular cathepsins have been shown to be involved in proteolysis of glycoproteins from these distinct virus families. Very little is currently known about the available proteases in bats. To determine whether the utilization of cathepsins by bat-borne viruses is related to the nature of proteases in their natural hosts, we examined proteolytic processing of several viral fusion proteins in cells derived from two fruit bat species, Pteropus alecto and Rousettus aegyptiacus. Our work shows that fruit bat cells have homologs of cathepsin and furin proteases capable of cleaving and activating both the cathepsin-dependent Hendra virus F and the furin-dependent parainfluenza virus 5 F proteins. Sequence analysis comparing Pteropus alecto furin and cathepsin L to proteases from other mammalian species showed a high degree of conservation; however significant amino acid variation occurs at the C-terminus of Pteropus alecto furin. Further analysis of furin-like proteases from fruit bats revealed that these proteases are catalytically active and resemble other mammalian furins in their response to a potent furin inhibitor. However, kinetic analysis suggests that differences may exist in the cellular localization of furin between different species. Collectively, these results indicate that the unusual role of cathepsin proteases in the life cycle of bat-borne viruses is not due to the lack of active furin-like proteases in these natural reservoir species; however, differences may exist between furin proteases present in fruit bats compared to furins in other mammalian species, and these differences may impact protease usage for viral glycoprotein processing. PMID:25706132

  9. Analysis of Cathepsin and Furin Proteolytic Enzymes Involved in Viral Fusion Protein Activation in Cells of the Bat Reservoir Host

    PubMed Central

    El Najjar, Farah; Lampe, Levi; Baker, Michelle L.; Wang, Lin-Fa; Dutch, Rebecca Ellis

    2015-01-01

    Bats of different species play a major role in the emergence and transmission of highly pathogenic viruses including Ebola virus, SARS-like coronavirus and the henipaviruses. These viruses require proteolytic activation of surface envelope glycoproteins needed for entry, and cellular cathepsins have been shown to be involved in proteolysis of glycoproteins from these distinct virus families. Very little is currently known about the available proteases in bats. To determine whether the utilization of cathepsins by bat-borne viruses is related to the nature of proteases in their natural hosts, we examined proteolytic processing of several viral fusion proteins in cells derived from two fruit bat species, Pteropus alecto and Rousettus aegyptiacus. Our work shows that fruit bat cells have homologs of cathepsin and furin proteases capable of cleaving and activating both the cathepsin-dependent Hendra virus F and the furin-dependent parainfluenza virus 5 F proteins. Sequence analysis comparing Pteropus alecto furin and cathepsin L to proteases from other mammalian species showed a high degree of conservation; however significant amino acid variation occurs at the C-terminus of Pteropus alecto furin. Further analysis of furin-like proteases from fruit bats revealed that these proteases are catalytically active and resemble other mammalian furins in their response to a potent furin inhibitor. However, kinetic analysis suggests that differences may exist in the cellular localization of furin between different species. Collectively, these results indicate that the unusual role of cathepsin proteases in the life cycle of bat-borne viruses is not due to the lack of active furin-like proteases in these natural reservoir species; however, differences may exist between furin proteases present in fruit bats compared to furins in other mammalian species, and these differences may impact protease usage for viral glycoprotein processing. PMID:25706132

  10. Remote identification of potential boll weevil host plants: Airborne multispectral detection of regrowth cotton

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Regrowth cotton plants can serve as potential hosts for boll weevils during and beyond the production season. Effective methods for timely areawide detection of these host plants are critically needed to expedite eradication in south Texas. We acquired airborne multispectral images of experimental...

  11. Evaluating Geothermal Potential in Germany by Numerical Reservoir Modeling of Engineered Geothermal Systems

    NASA Astrophysics Data System (ADS)

    Jain, Charitra; Vogt, Christian; Clauser, Christoph

    2014-05-01

    We model hypothetical Engineered Geothermal System (EGS) reservoirs by solving coupled partial differential equations governing fluid flow and heat transport. Building on EGS's strengths of inherent modularity and storage capability, it is possible to implement multiple wells in the reservoir to extend the rock volume accessible for circulating water in order to increase the heat yield. By varying parameters like flow rates and well-separations in the subsurface, this study looks at their long-term impacts on the reservoir development. This approach allows us to experiment with different placements of the engineered fractures and propose several EGS layouts for achieving optimized heat extraction. Considering the available crystalline area and accounting for the competing land uses, this study evaluates the overall EGS potential and compares it with those of other used renewables in Germany. There is enough area to support 13450 EGS plants, each with six reversed-triplets (18 wells) and an average electric power of 35.3MWe. When operated at full capacity, these systems can collectively supply 4155TWh of electric energy in one year which would be roughly six times the electric energy produced in Germany in the year 2011. Engineered Geothermal Systems make a compelling case for contributing towards national power production in a future powered by a sustainable, decentralized energy system.

  12. ANALYSIS OF FAULT SEAL POTENTIAL FOR KNOX RESERVOIRS IN THE SOUTHERN ILLINOIS BASIN

    SciTech Connect

    Hickman, John; Leetaru, Hannes

    2014-09-30

    The presence of known faults near potential geologic CO2 sequestration sites significantly raises the uncertainty of having a sufficient seal to prevent leakage along the fault plane from the intended reservoir. In regions where relocating a large sequestration project a considerable distance away from any known faults is impractical, a detailed analysis of the sealing potential of any faults within the projected future injection plume must be performed. In order to estimate the sealing potential of faults within the Late Cambrian-Early Ordovician Knox Supergroup in the Illinois Basin, two well-based cross sections were produced across two different regional fault systems (Rough Creek Fault Zone in Kentucky, and the unnamed core fault of the LaSalle Anticlinorium in Illinois) to calculate subsurface stratigraphic juxtapositions across each fault zone. Using this stratigraphic and lithologic data, three different algorithms were used to calculate the sealing potential of a theoretical Knox reservoir at each section location. These results indicate a high probability for sealing within the Rough Creek Fault Zone, but a much lower probability for a continuous seal within the LaSalle Anticlinorium.

  13. The development of a host potential index and its postharvest application to the spotted wing drosophila, Drosophila suzukii (Diptera: Drosophilidae)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Novel methodology is presented for indexing the relative potential of hosts to function as resources. Results from studies examining host selection, utilization, and physiological development of the organism resourcing the host were combined and quantitatively related via a Host Potential Index (HPI...

  14. Gas reservoir potential of the Lower Ordovician Beekmantown Group, Quebec Lowlands, Canada

    SciTech Connect

    Dykstra, J.C.F.; Longman, M.W.

    1995-04-01

    The Beekmantown Group in the Quebec Lowlands was deposited as part of an extensive Early Ordovician coastal and shallow marine complex on the eastern margin of the North American craton. The Beekmantown is stratigraphically equivalent to the Beekmantown, Knox, Arbuckle, and Ellenburger rocks of the United States, and is subdivided into two formations: the sandstone-rich Theresa Formation and the overlying dolomite-rich Beauharnois. Dolomites of the Beekmantown provide an important exploration target in both the autochthon and the overlying thrust sheets of the Canadian and U.S. Appalachians. The reservoir potential of the autochthonous Beekmantown Group in the Quebec Lowlands can be determined from seismic data, well logs, cuttings, and petrographic analyses of depositional and diagenetic textures. Deposition of the Beekmantown occurred alongson the western passive margin of the Iapetus Ocean. By the Late Ordovician, the passive margin had been transformed into a foreland basin. Faulting locally positioned Upper Ordovician Utica source rocks against the Beekmantown and contributed to forming hydrocarbon reservoirs. The largest Beekmantown reservoir found to date is the St. Flavien field, with 7.75 bcf of original gas (methane) in place in fractured and possibly karst-influenced allochthonous dolomites within a thrust-fault anticline. Seven major depositional units can be distinguished in cuttings and correlated with wireline logs. Dolomites in the Beekmantown contain vuggy, moldic, intercrystalline, and fracture porosity. Early porosity formed at the top of the major depositional units in peritidal dolomites; however, much of this porosity was later filled by late-stage calcite cement after hydrocarbon migration. Thus, a key to finding gas reservoirs in the autochthonous Beekmantown is to define Ordovician poleostructures in which early and continuous entrapment of hydrocarbons prevented later cementation.

  15. Potential CO2 Sequestration in Oil Field Reservoirs: Baseline Mineralogy and Natural Diagenesis, Kern County, California

    NASA Astrophysics Data System (ADS)

    Horton, R. A.; Kaess, A. B.; Nguyen, D. T.; Caffee, S. E.; Olabise, O. E.

    2015-12-01

    Depleted oil fields have been suggested as potential sites for sequestration of CO2 generated from the burning of hydrocarbons. However, to be effective for removing CO2 from the atmosphere, the injected CO2 must remain within the reservoir. The role of atmospheric CO2 in rock weathering is well known and a growing body of experimental work indicates that under reservoir conditions supercritical CO2 also reacts with sedimentary rocks. In order to predict the behavior of injected CO2 in a given reservoir, detailed knowledge of the mineralogy is required. In addition, post-injection monitoring may include analyzing core samples to examine interactions between reservoir rocks and the CO2. Thus, documentation of the natural diagenetic processes within the reservoir is necessary so that changes caused by reactions with CO2 can be recognized. Kern County, California has been a major petroleum producing area for over a century and has three oil fields that have been identified as potential sites for CO2 sequestration. Two of these, Rio Bravo-Greeley and McKittrick, have no previously published mineralogic studies. Samples from these (and nearby Wasco) oil fields were studied using transmitted-light petrography and scanning electron microscopy. At Rio Bravo-Greeley-Wasco, Kreyenhagen (Eocene) and Vedder (Oligocene) sandstones are mainly arkosic arenites with only small amounts of volcanic rock fragments. Detrital feldspars exhibit wide compositional ranges (up to Or75Ab25 & Ab50An50). Diagenesis has greatly altered the rocks. There are significant amounts of relatively pure authigenic K-feldspar and albite. Small amounts of authigenic quartz, calcite, dolomite, ankerite, kaolinite, illite/smectite, chlorite, zeolite, and pyrite are present. Plagioclase has been preferentially dissolved, with andesine more susceptible than oligoclase. Al3+ has been exported from the sandstones. At McKittrick, Temblor sandstones (Oligocene-Miocene) contain up to 33% volcanic rock fragments

  16. Phylogeographic Structure of the White-Footed Mouse and the Deer Mouse, Two Lyme Disease Reservoir Hosts in Québec

    PubMed Central

    Fiset, Jessica; Tessier, Nathalie; Millien, Virginie; Lapointe, Francois-Joseph

    2015-01-01

    Modification of a species range is one of many consequences of climate change and is driving the emergence of Lyme disease in eastern Canada. The primary reservoir host of the bacteria responsible for Lyme disease, Borrelia burgdorferi, is the white-footed mouse (Peromyscus leucopus), whose range is rapidly shifting north into southern Québec. The deer mouse, P. maniculatus, is occurring over most Québec province and is a less competent host for B. burgdorferi. Here, we compared the phylogeographic structure of both Peromyscus species in Québec. Using a combination of multiple mitochondrial DNA markers and phylogeographic methods, we detected an ongoing and rapid expansion of P. leucopus, while P. maniculatus appears more stable. Haplotype and populations networks indicated that populations of P. maniculatus exhibit more genetic structure than P. leucopus across the study area. Furthermore, significant and consistent genetic divergences between populations of the two species on both sides of the St. Lawrence River suggest that distinct lineages of P. leucopus and P. maniculatus with different ancestral origins colonized Southern Québec following the Last Glacial Maximum. The phylogeographic structure of pathogens is expected to mirror the structure observed in their reservoir hosts. As different strains of Borrelia burgdorferi may be associated with different levels of pathogenicity and immune responses of their hosts, our results are helpful at better understanding the pattern of spread of Lyme disease in a zone of emergence, and associated risk for human populations. PMID:26633555

  17. Phylogeographic Structure of the White-Footed Mouse and the Deer Mouse, Two Lyme Disease Reservoir Hosts in Québec.

    PubMed

    Fiset, Jessica; Tessier, Nathalie; Millien, Virginie; Lapointe, Francois-Joseph

    2015-01-01

    Modification of a species range is one of many consequences of climate change and is driving the emergence of Lyme disease in eastern Canada. The primary reservoir host of the bacteria responsible for Lyme disease, Borrelia burgdorferi, is the white-footed mouse (Peromyscus leucopus), whose range is rapidly shifting north into southern Québec. The deer mouse, P. maniculatus, is occurring over most Québec province and is a less competent host for B. burgdorferi. Here, we compared the phylogeographic structure of both Peromyscus species in Québec. Using a combination of multiple mitochondrial DNA markers and phylogeographic methods, we detected an ongoing and rapid expansion of P. leucopus, while P. maniculatus appears more stable. Haplotype and populations networks indicated that populations of P. maniculatus exhibit more genetic structure than P. leucopus across the study area. Furthermore, significant and consistent genetic divergences between populations of the two species on both sides of the St. Lawrence River suggest that distinct lineages of P. leucopus and P. maniculatus with different ancestral origins colonized Southern Québec following the Last Glacial Maximum. The phylogeographic structure of pathogens is expected to mirror the structure observed in their reservoir hosts. As different strains of Borrelia burgdorferi may be associated with different levels of pathogenicity and immune responses of their hosts, our results are helpful at better understanding the pattern of spread of Lyme disease in a zone of emergence, and associated risk for human populations. PMID:26633555

  18. Potential Parasite Transmission in Multi-Host Networks Based on Parasite Sharing

    PubMed Central

    Pilosof, Shai; Morand, Serge; Krasnov, Boris R.; Nunn, Charles L.

    2015-01-01

    Epidemiological networks are commonly used to explore dynamics of parasite transmission among individuals in a population of a given host species. However, many parasites infect multiple host species, and thus multi-host networks may offer a better framework for investigating parasite dynamics. We investigated the factors that influence parasite sharing – and thus potential transmission pathways – among rodent hosts in Southeast Asia. We focused on differences between networks of a single host species and networks that involve multiple host species. In host-parasite networks, modularity (the extent to which the network is divided into subgroups of rodents that interact with similar parasites) was higher in the multi-species than in the single-species networks. This suggests that phylogeny affects patterns of parasite sharing, which was confirmed in analyses showing that it predicted affiliation of individuals to modules. We then constructed “potential transmission networks” based on the host-parasite networks, in which edges depict the similarity between a pair of individuals in the parasites they share. The centrality of individuals in these networks differed between multi- and single-species networks, with species identity and individual characteristics influencing their position in the networks. Simulations further revealed that parasite dynamics differed between multi- and single-species networks. We conclude that multi-host networks based on parasite sharing can provide new insights into the potential for transmission among hosts in an ecological community. In addition, the factors that determine the nature of parasite sharing (i.e. structure of the host-parasite network) may impact transmission patterns. PMID:25748947

  19. Exploring increase of flood attenuation potential of reservoirs through simple gates operations.

    NASA Astrophysics Data System (ADS)

    Masoero, A.; Claps, P.; Ganora, D.; Petaccia, A.

    2012-04-01

    Along with other flood risk mitigation measures, artificial flood storage has been considered as a mean to control flood peaks in mountainous basins, particularly as part of the flood management practices. Classical studies attain the evaluation of the 'natural' flood attenuation potential driven by the portion of volume available above the spillway crest level. These studies allow to reconstruct modified flood frequency curves in sections downstream as modified by this unconditioned type of attenuation. Less understood is the possibility to quantify the additional attenuation potential of reservoirs deriving by simple and standardized gates operations. Unconditioned gates opening in advance with respect to the incoming flood are the typical operations considered in this work. The study has been carried out using a system of 63 artificial reservoirs located in the Northwestern part of Italy, for which a comprehensive set of hydrological and hydraulic data has been collected with the help of the Italian Dams Authority (Registro Italiano Dighe, RID). The main aim of the study is to select the most interesting cases in which gates operation is able to consistently improve flood attenuation, and provide an overview of the effect that these dams exercise on the flood frequency curves of the river sections downstream. For what the 'natural' attenuation potential is concerned, an attenuation index named SFA (Synthetic Flood Attenuation) has been computed on all dams and subsequently used to modify the original frequency curve of the incoming floods. A recent regional statistical method for flood estimation has been used for this purpose. With the help of the same model and of additional information required to describe flood volumes, triangular and power-law synthetic flood hydrographs have been simulated. Gates operation is addressed to a preemptive drawdown, and is conceived as a fixed opening in defined conditions at the flood arrival. Consequently, the maximum

  20. 3D modelling of a dolomitized syn-sedimentary structure: an exhumed potential analogue of hydrocarbon reservoir.

    NASA Astrophysics Data System (ADS)

    Martinelli, Mattia; Franceschi, Marco; Massironi, Matteo; Bistacchi, Andrea; Di Cuia, Raffaele; Rizzi, Alessandro

    2016-04-01

    further increase the potential creation of potential hydrocarbon traps. These complex conditions are visible in a syn-sedimentary structure spectacularly exposed on the Monte Testo (Trentino, Italy). In this contribution, we present a 3D geo-model of this structure, obtained with SKUA-gOcad, based on 3D photogrammetric modelling, detailed geological mapping and structural analysis, porosity analysis carried out on representative sections, and geostatistical simulation of porosity on dolomitized bodies. Thanks to the 3D model we obtained: i) a thickness map of the Rotzo Formation that allow us to understand which faults were active during the deposition of the formation and which areas could have been more suitable for hydrocarbon accumulation; ii) a geometric and volumetric model of the structure that permitted us to study the porosity distribution and to define the potential volume of hydrocarbons that could be hosted by a similar structure. These results were eventually extrapolated to the entire platform, providing clues on the hydrocarbon potential of similar buried geologic bodies.

  1. Detecting fluid leakage of a reservoir dam based on streaming self-potential measurements

    NASA Astrophysics Data System (ADS)

    Song, Seo Young; Kim, Bitnarae; Nam, Myung Jin; Lim, Sung Keun

    2015-04-01

    Between many reservoir dams for agriculture in suburban area of South Korea, water leakage has been reported several times. The dam under consideration in this study, which is located in Gyeong-buk, in the south-east of the Korean Peninsula, was reported to have a large leakage at the right foot of downstream side of the reservoir dam. For the detection of the leakage, not only geological survey but also geophysical explorations have been made for precision safety diagnosis, since the leakage can lead to dam failure. Geophysical exploration includes both electrical-resistivity and self-potential surveys, while geological surveys water permeability test, standard penetration test, and sampling for undisturbed sample during the course of the drilling investigation. The geophysical explorations were made not only along the top of dam but also transverse the heel of dam. The leakage of water installations can change the known-heterogeneous structure of the dam body but also cause streaming spontaneous (self) potential (SP) anomaly, which can be detected by electrical resistivity and SP measurements, respectively. For the interpretation of streaming SP, we used trial-and-error method by comparing synthetic SP data with field SP data for model update. For the computation, we first invert the resistivity data to obtain the distorted resistivity structure of the dam levee then make three-dimensional electrical-resistivity modeling for the streaming potential distribution of the dam levee. Our simulation algorithm of streaming SP distribution based on the integrated finite difference scheme computes two-dimensional (2D) SP distribution based on the distribution of calculated flow velocities of fluid for a given permeability structure together with physical properties. This permeability is repeatedly updated based on error between synthetic and field SP data, until the synthetic data match the field data. Through this trial-and-error-based SP interpretation, we locate the

  2. [Potential ecological risks assessment of heavy metals in the reservoir sediment of the western Haihe River basin].

    PubMed

    Cheng, Xian; Wang, Rui-lin; Wang, Jian-li; Sun, Ran-hao

    2015-05-01

    The reservoirs distributed in the western part of Haihe River basin play a key role in drinking water supply in the densely populated region. The potential ecological risk of heavy metals stored in the reservoir sediments has drawn more attention during recent decades. In this study, a total of 10 reservoirs in the western Haihe River basin were sampled. The sediment samples were assessed by the Hakanson potential ecological risk evaluation index. The sediments of upstream and downstream rivers were also sampled for comparative analysis with those of the reservoirs. The results indicated the concentration of Cd was significantly higher than the background value in this region, it was 1.67 times of the background value on average and the highest was 2.77 times. The concentration of Pb was higher than the background value for more than half of the reservoirs. The potential ecological risk was evaluated by the toxic coefficient. The ecological risk level was decreased in the order of Cd>As>Pb>Ni>Cu>Cr>Zn. The ecological risk of Cd in most reservoir sediments belonged to a moderate harm. Xidayang Reservior, which supplied the drinking water for Beijing and Baoding, had the highest level of Cd pollution. The ecological risk of Cd in the upstream and downstream rivers was significantly higher than that of the reservoirs. In addition, the ecological risks of Pb, Cu and Ni in the upstream rivers were also higher than the reservoirs. The difference of ecological risks of Zn and Cr was not significant between reservoirs and rivers. PMID:26571670

  3. [Evaluation and consideration of BRM-BRM and HDP (host defense potentiators)].

    PubMed

    Chihara, G

    1988-04-01

    It should first be stressed that the term BRM is wrong and unscientific, since this would include potassium cyanide or cancer chemotherapeutics in the strict sense of the term. Therefore, in this article we discuss the evaluation of Host Defence Potentiators (HDP). IL-2 or TNF should not be included as HDP because their action is local and not selective to cancer cells, similar to the case of cancer chemotherapeutics. IL-2 is not useful without the presence of IL-2-responsive cells in the host. The most important facet of the action of HDP is to increase the response of the host to cytokines or other bioactive substances according to the degree of maturation, differentiation or proliferation of responsive cells in the host defence mechanism. Lentinan appears to represent a unique class of HDP, markedly potentiating host resistance to cancer and bacterial, viral and parasitic infections, and shows prominent antitumor activity in syngeneic and autochthonous hosts, suppressing chemical and viral oncogenesis. The most important target of HDP is complete prevention of recurrence after "curative" surgery fundamentally through growth inhibition and regression of a small number of autochthonous tumor cells scattered in the host. Considering the excellent end-point results for phase III advanced and recurrent gastrointestinal and breast cancer, lentinan seems to be the most hopeful drug against cancer recurrence. The development of various new types of MDP mediating host homeostasis in the immune, endocrine and nervous systems and nutritional states is expected. PMID:3382231

  4. Mini Review: Potential Applications of Non-host Resistance for Crop Improvement.

    PubMed

    Lee, Seonghee; Whitaker, Vance M; Hutton, Samuel F

    2016-01-01

    Plant breeding for disease resistance is crucial to sustain global crop production. For decades, plant breeders and researchers have extensively used host plant resistance genes (R-genes) to develop disease resistant cultivars. However, the general instability of R-genes in crop cultivars when challenged with diverse pathogen populations emphasizes the need for more stable means of resistance. Alternatively, non-host resistance is recognized as the most durable, broad-spectrum form of resistance against the majority of potential pathogens in plants and has gained great attention as an alternative target for managing resistance. While transgenic approaches have been utilized to transfer non-host resistance to host species, conventional breeding applications have been more elusive. Nevertheless, avenues for discovery and deployment of genetic loci for non-host resistance via hybridization are increasingly abundant, particularly when transferring genes among closely related species. In this mini review, we discuss current and developing applications of non-host resistance for crop improvement with a focus on the overlap between host and non-host mechanisms and the potential impacts of new technology. PMID:27462329

  5. Mini Review: Potential Applications of Non-host Resistance for Crop Improvement

    PubMed Central

    Lee, Seonghee; Whitaker, Vance M.; Hutton, Samuel F.

    2016-01-01

    Plant breeding for disease resistance is crucial to sustain global crop production. For decades, plant breeders and researchers have extensively used host plant resistance genes (R-genes) to develop disease resistant cultivars. However, the general instability of R-genes in crop cultivars when challenged with diverse pathogen populations emphasizes the need for more stable means of resistance. Alternatively, non-host resistance is recognized as the most durable, broad-spectrum form of resistance against the majority of potential pathogens in plants and has gained great attention as an alternative target for managing resistance. While transgenic approaches have been utilized to transfer non-host resistance to host species, conventional breeding applications have been more elusive. Nevertheless, avenues for discovery and deployment of genetic loci for non-host resistance via hybridization are increasingly abundant, particularly when transferring genes among closely related species. In this mini review, we discuss current and developing applications of non-host resistance for crop improvement with a focus on the overlap between host and non-host mechanisms and the potential impacts of new technology. PMID:27462329

  6. Experimental infection studies demonstrating Atlantic salmon as a host and reservoir of viral hemorrhagic septicemia virus type IVa with insights into pathology and host immunity

    USGS Publications Warehouse

    Lovy, Jan; Piesik, P.; Hershberger, P.K.; Garver, K.A.

    2013-01-01

    In British Columbia, Canada (BC), aquaculture of finfish in ocean netpens has the potential for pathogen transmission between wild and farmed species due to the sharing of an aquatic environment. Viral hemorrhagic septicemia virus (VHSV) is enzootic in BC and causes serious disease in wild Pacific herring, Clupea pallasii, which often enter and remain in Atlantic salmon, Salmo salar, netpens. Isolation of VHSV from farmed Atlantic salmon has been previously documented, but the effects on the health of farmed salmon and the wild fish sharing the environment are unknown. To determine their susceptibility, Atlantic salmon were exposed to a pool of 9 isolates of VHSV obtained from farmed Atlantic salmon in BC by IP-injection or by waterborne exposure and cohabitation with diseased Pacific herring. Disease intensity was quantified by recording mortality, clinical signs, histopathological changes, cellular sites of viral replication, expression of interferon-related genes, and viral tissue titers. Disease ensued in Atlantic salmon after both VHSV exposure methods. Fish demonstrated gross disease signs including darkening of the dorsal skin, bilateral exophthalmia, light cutaneous hemorrhage, and lethargy. The virus replicated within endothelial cells causing endothelial cell necrosis and extensive hemorrhage in anterior kidney. Infected fish demonstrated a type I interferon response as seen by up-regulation of genes for IFNα, Mx, and ISG15. In a separate trial infected salmon transmitted the virus to sympatric Pacific herring. The results demonstrate that farmed Atlantic salmon can develop clinical VHS and virus can persist in the tissues for at least 10 weeks. Avoiding VHS epizootics in Atlantic salmon farms would limit the potential of VHS in farmed Atlantic salmon, the possibility for further host adaptation in this species, and virus spillback to sympatric wild fishes.

  7. Experimental infection studies demonstrating Atlantic salmon as a host and reservoir of viral hemorrhagic septicemia virus type IVa with insights into pathology and host immunity.

    PubMed

    Lovy, J; Piesik, P; Hershberger, P K; Garver, K A

    2013-09-27

    In British Columbia, Canada (BC), aquaculture of finfish in ocean netpens has the potential for pathogen transmission between wild and farmed species due to the sharing of an aquatic environment. Viral hemorrhagic septicemia virus (VHSV) is enzootic in BC and causes serious disease in wild Pacific herring, Clupea pallasii, which often enter and remain in Atlantic salmon, Salmo salar, netpens. Isolation of VHSV from farmed Atlantic salmon has been previously documented, but the effects on the health of farmed salmon and the wild fish sharing the environment are unknown. To determine their susceptibility, Atlantic salmon were exposed to a pool of 9 isolates of VHSV obtained from farmed Atlantic salmon in BC by IP-injection or by waterborne exposure and cohabitation with diseased Pacific herring. Disease intensity was quantified by recording mortality, clinical signs, histopathological changes, cellular sites of viral replication, expression of interferon-related genes, and viral tissue titers. Disease ensued in Atlantic salmon after both VHSV exposure methods. Fish demonstrated gross disease signs including darkening of the dorsal skin, bilateral exophthalmia, light cutaneous hemorrhage, and lethargy. The virus replicated within endothelial cells causing endothelial cell necrosis and extensive hemorrhage in anterior kidney. Infected fish demonstrated a type I interferon response as seen by up-regulation of genes for IFNα, Mx, and ISG15. In a separate trial infected salmon transmitted the virus to sympatric Pacific herring. The results demonstrate that farmed Atlantic salmon can develop clinical VHS and virus can persist in the tissues for at least 10 weeks. Avoiding VHS epizootics in Atlantic salmon farms would limit the potential of VHS in farmed Atlantic salmon, the possibility for further host adaptation in this species, and virus spillback to sympatric wild fishes. PMID:23838146

  8. The reservoir potential of the Zechstein-3 carbonate member (Platten), offshore Netherlands

    SciTech Connect

    Baird, A.; Kelly, J.; Symonds, R. )

    1993-09-01

    The Platten has been examined from 31 released and nonreleased wells, dominantly from northern P and Q quadrants, Dutch North Sea, and including a limited number of adjacent onshore wells. Wireline log interpretations have been allied with available core log, sidewall core, and ditch sample data. This has allowed a division into four broad facies associations: lower ramp, shoal shoreface, lagoonal, and the dominantly siliciclastic peritidal. Primary porosity is concentrated in ooid grainstones of the shoal/shoreface facies association. Diagenesis has also been examined. While the Platten has been broadly affected by early dolomitization, which generally occluded porosity, later diagenesis was more selective and had a significant control on porosity creation more selective and has a significant control on porosity creation as well as occlusion. Location of Platten reservoir potential is shown by facies association, diagenetic texture, and percentage porosity maps. The best reservoir conditions in the Platten exist where the shoal/shoreface facies association coincides with faults and with diagenesis associated with fluid movements through fractures. Low-temperature hydrothermal fluids are shown in this study to be the most important control on the hydrocarbon potential of the Platten in much of the P and Q quadrants.

  9. Potential evaluation of CO2 storage and enhanced oil recovery of tight oil reservoir in the Ordos Basin, China.

    PubMed

    Tian, Xiaofeng; Cheng, Linsong; Cao, Renyi; Zhang, Miaoyi; Guo, Qiang; Wang, Yimin; Zhang, Jian; Cui, Yu

    2015-07-01

    Carbon -di-oxide (CO2) is regarded as the most important greenhouse gas to accelerate climate change and ocean acidification. The Chinese government is seeking methods to reduce anthropogenic CO2 gas emission. CO2 capture and geological storage is one of the main methods. In addition, injecting CO2 is also an effective method to replenish formation energy in developing tight oil reservoirs. However, exiting methods to estimate CO2 storage capacity are all based on the material balance theory. This was absolutely correct for normal reservoirs. However, as natural fractures widely exist in tight oil reservoirs and majority of them are vertical ones, tight oil reservoirs are not close. Therefore, material balance theory is not adaptive. In the present study, a new method to calculate CO2 storage capacity is presented. The CO2 effective storage capacity, in this new method, consisted of free CO2, CO2 dissolved in oil and CO2 dissolved in water. Case studies of tight oil reservoir from Ordos Basin was conducted and it was found that due to far lower viscosity of CO2 and larger solubility in oil, CO2 could flow in tight oil reservoirs more easily. As a result, injecting CO2 in tight oil reservoirs could obviously enhance sweep efficiency by 24.5% and oil recovery efficiency by 7.5%. CO2 effective storage capacity of Chang 7 tight oil reservoir in Longdong area was 1.88 x 10(7) t. The Chang 7 tight oil reservoir in Ordos Basin was estimated to be 6.38 x 10(11) t. As tight oil reservoirs were widely distributed in Songliao Basin, Sichuan Basin and so on, geological storage capacity of CO2 in China is potential. PMID:26387353

  10. Genomic profiling of host responses to Lassa virus: therapeutic potential from primate to man

    PubMed Central

    Zapata, Juan C; Salvato, Maria S

    2015-01-01

    Lassa virus infection elicits distinctive changes in host gene expression and metabolism. We focus on changes in host gene expression that may be biomarkers that discriminate individual pathogens or may help to provide a prognosis for disease. In addition to assessing mRNA changes, functional studies are also needed to discriminate causes of disease from mechanisms of host resistance. Host responses that drive pathogenesis are likely to be targets for prevention or therapy. Host responses to Lassa or its related arenaviruses have been monitored in cell culture, in animal models of hemorrhagic fever, in Lassa-infected nonhuman primates and, to a limited extent, in infected human beings. Here, we describe results from those studies and discuss potential targets for reducing virus replication and mitigating disease. PMID:25844088

  11. Preliminary study of a potential CO2 reservoir area in Hungary

    NASA Astrophysics Data System (ADS)

    Sendula, Eszter; Király, Csilla; Szabó, Zsuzsanna; Falus, György; Szabó, Csaba; Kovács, István; Füri, Judit; Kónya, Péter; Páles, Mariann; Forray, Viktória

    2014-05-01

    Since the first international agreement in 1997 (the Kyoto Protocol) the reduction of greenhouse gas emission has a key role in the European Union's energy and climate change policy. Following the Directive 2009/31/EC we are experiencing a significant change in the Hungarian national activity. Since the harmonization procedure, which was completed in May 2012, the national regulation obligates the competent authority to collect and regularly update all geological complexes that are potential for CO2 geological storage. In Hungary the most abundant potential storage formations are mostly saline aquifers of the Great Hungarian Plain (SE-Hungary), with sandstone reservoir and clayey caprock. The Neogene basin of the Great Hungarian Plain was subsided and then filled by a prograding delta system from NW and NE during the Late Miocene, mostly in the Pannonian time. The most potential storage rock was formed as a fine-grained sandy turbidite interlayered by thin argillaceous beds in the deepest part of the basin. It has relatively high porosity, depth and more than 1000 m thickness. Providing a regional coverage for the sandy turbidite, a 400-500 m thick argillaceous succession was formed in the slope environment. The composition, thickness and low permeability is expected to make it a suitable, leakage-safe caprock of the storage system. This succession is underlain by argillaceous rocks that were formed in the basin, far from sediment input and overlain by interfingering siltstone, sandstone and claystone succession formed in delta and shoreline environments and in the alluvial plain. Core samples have been collected from the potential reservoir rock and its cap rock in the Great Hungarian Plain's succession. The water compositions of the studied depth were known from well-log database. Using the information, acquired from these archive documents, we have constructed input data for geochemical modeling in order to to study the effect of pCO2 injection in the potential

  12. Modeling Self-Potential Effects During Reservoir Stimulation in Enhanced Geothermal Systems.

    NASA Astrophysics Data System (ADS)

    Troiano, Antonio; Giulia Di Giuseppe, Maria; Monetti, Alessio; Patella, Domenico; Troise, Claudia; De Natale, Giuseppe

    2015-04-01

    Geothermal systems represent a large resource that can provide, with a reasonable investment, a very high and cost-effective power generating capacity. Considering also the very low environmental impact, their development represents, in the next decades, an enormous perspective. Despite its unquestionable potential, geothermal exploitation has long been perceived as limited, mainly because of the dependence from strict site-related conditions, mainly related to the reservoir rock's permeability and to the high thermal gradient, implying the presence of large amounts of hot fluids at reasonable depth. Many of such limitations can be overcome using Enhanced Geothermal Systems technology (EGS), where massive fluid injection is performed to increase the rock permeability by fracturing. This is a powerful method to exploit hot rocks with low natural permeability, otherwise not exploitable. Numerical procedures have already been presented in literature reproducing thermodynamic evolution and stress changes of systems where fluids are injected. However, stimulated fluid flow in geothermal reservoirs can produce also surface Self-Potential (SP) anomalies of several mV. A commonly accepted interpretation involves the activation of electrokinetic processes. Since the induced seismicity risk is generally correlated to fluid circulation stimulated in an area exceeding the well of several hundreds of meters, the wellbore pressure values can be totally uncorrelated to seismic hazard. However, SP anomalies, being generated from pressure gradients in the whole area where fluids flow, has an interesting potential as induced earthquake precursor. In this work, SP anomalies observed above the Soultz-sous-Forets (Alsace, France) geothermal reservoir while injecting cold water have been modeled, considering a source related to the fluid flow induced by the well stimulation process. In particular, the retrieved changes of pressure due to well stimulation in the EGS system have been used

  13. High prevalence of Opisthorchis viverrini infection in reservoir hosts in four districts of Khon Kaen Province, an opisthorchiasis endemic area of Thailand.

    PubMed

    Aunpromma, Surasit; Tangkawattana, Prasarn; Papirom, Pittaya; Kanjampa, Prapan; Tesana, Smarn; Sripa, Banchob; Tangkawattana, Sirikachorn

    2012-03-01

    Khon Kaen, a northeastern province of Thailand, has been considered as one of the human opisthorchiasis endemic areas with continuing high prevalence. Unsuccessful eradication of the disease is probably from the culture of eating raw and undercooked fish of local residence and the parasitic persistency in animal reservoir hosts, such as cats and dogs. In cooperation with the other human opisthorchiasis control programs in an endemic area of 29 villages in Ban Haet, Ban Phai, Chonnabot and Muncha Khiri Districts, Khon Kaen, this study investigated the prevalence of Opisthorchis viverrini infection using a formalin-ether sedimentation method as the gold standard, and hematology and blood chemistry of the reservoir hosts in this endemic area. The results showed that cats had much higher prevalence (76 of 214, 35.51%) than dogs (3 of 821, 0.37%). Hematology between the infected and uninfected cats was not different. Complete blood count and biochemistry reflected some altered hepatic functions. However, only severely infected cats showed apparent clinical signs, including lethargy, diarrhea, ocular and nasal discharges. Moreover, the ultrasonogram of infected cats with very high egg per gram (>1500 EPG) showed apparent thickening of the gall bladder wall with hyperechoicity of hepatic parenchyma. This study suggests that cat is the most important animal reservoir of human opisthorchiasis, especially in this endemic area. It is also interesting that villages with infection are mostly located in the vicinity of Chi River and two large water reservoirs (Lawa and Nong Kongkaew Lakes), but people without infection were away from Chi River, on the south of Kudkhow Lake. Further investigation on this particular geofactor is essential for effective opisthorchiasis control programs. PMID:21843654

  14. Seasonal distribution of potentially pathogenic Acanthamoeba species from drinking water reservoirs in Taiwan.

    PubMed

    Kao, Po-Min; Hsu, Bing-Mu; Hsu, Tsui-Kang; Liu, Jorn-Hon; Chang, Hsiang-Yu; Ji, Wen-Tsai; Tzeng, Kai-Jiun; Huang, Shih-Wei; Huang, Yu-Li

    2015-03-01

    In order to detect the presence/absence of Acanthamoeba along with geographical variations, water quality variations and seasonal change of Acanthamoeba in Taiwan was investigated by 18S ribosomal RNA (rRNA) gene TaqMan quantitative real-time PCR. Samples were collected quarterly at 19 drinking water reservoir sites from November 2012 to August 2013. Acanthamoeba was detected in 39.5 % (30/76) of the water sample, and the detection rate was 63.2 % (12/19) from samples collected in autumn. The average concentration of Acanthamoeba was 3.59 × 10(4) copies/L. For geographic distribution, the detection rate for Acanthamoeba at the northern region was higher than the central and southern regions in all seasons. Results of Spearman rank test revealed that heterotrophic plate count (HPC) had a negative correlation (R = -0.502), while dissolved oxygen (DO) had a positive correlation (R = 0.463) in summer. Significant differences were found only between the presence/absence of Acanthamoeba and HPC in summer (Mann-Whitney U test, P < 0.05). T2 and T4 genotypes of Acanthamoeba were identified, and T4 was the most commonly identified Acanthamoeba genotypes. The presence of Acanthamoeba in reservoirs presented a potential public health threat and should be further examined. PMID:25263419

  15. Western Greece unconventional hydrocarbon potential from oil shale and shale gas reservoirs

    NASA Astrophysics Data System (ADS)

    Karakitsios, Vasileios; Agiadi, Konstantina

    2013-04-01

    It is clear that we are gradually running out of new sedimentary basins to explore for conventional oil and gas and that the reserves of conventional oil, which can be produced cheaply, are limited. This is the reason why several major oil companies invest in what are often called unconventional hydrocarbons: mainly oil shales, heavy oil, tar sand and shale gas. In western Greece exist important oil and gas shale reservoirs which must be added to its hydrocarbon potential1,2. Regarding oil shales, Western Greece presents significant underground immature, or close to the early maturation stage, source rocks with black shale composition. These source rock oils may be produced by applying an in-situ conversion process (ICP). A modern technology, yet unproven at a commercial scale, is the thermally conductive in-situ conversion technology, developed by Shell3. Since most of western Greece source rocks are black shales with high organic content, those, which are immature or close to the maturity limit have sufficient thickness and are located below 1500 meters depth, may be converted artificially by in situ pyrolysis. In western Greece, there are several extensive areas with these characteristics, which may be subject of exploitation in the future2. Shale gas reservoirs in Western Greece are quite possibly present in all areas where shales occur below the ground-water level, with significant extent and organic matter content greater than 1%, and during their geological history, were found under conditions corresponding to the gas window (generally at depths over 5,000 to 6,000m). Western Greece contains argillaceous source rocks, found within the gas window, from which shale gas may be produced and consequently these rocks represent exploitable shale gas reservoirs. Considering the inevitable increase in crude oil prices, it is expected that at some point soon Western Greece shales will most probably be targeted. Exploration for conventional petroleum reservoirs

  16. Build-and-fill sequences: How subtle paleotopography affects 3-D heterogeneity of potential reservoir facies

    USGS Publications Warehouse

    McKirahan, J.R.; Goldstein, R.H.; Franseen, E.K.

    2005-01-01

    This study analyzes the three-dimensional variability of a 20-meter-thick section of Pennsylvanian (Missourian) strata over a 600 km2 area of northeastern Kansas, USA. It hypothesizes that sea-level changes interact with subtle variations in paleotopography to influence the heterogeneity of potential reservoir systems in mixed carbonate-silidclastic systems, commonly produdng build-and-fill sequences. For this analysis, ten lithofacies were identified: (1) phylloid algal boundstone-packstone, (2) skeletal wackestone-packstone, (3) peloidal, skeletal packstone, (4) sandy, skeletal grainstone-packstone, (5) oolite grainstone-packstone, (6) Osagia-brachiopod packstone, (7) fossiliferous siltstone, (8) lenticular bedded-laminated siltstone and fine sandstone, (9) organic-rich mudstone and coal, and (10) massive mudstone. Each facies can be related to depositional environment and base-level changes to develop a sequence stratigraphy consisting of three sequence boundaries and two flooding surfaces. Within this framework, eighteen localities are used to develop a threedimensional framework of the stratigraphy and paleotopography. The studied strata illustrate the model of "build-and-fill". In this example, phylloid algal mounds produce initial relief, and many of the later carbonate and silidclastic deposits are focused into subtle paleotopographic lows, responding to factors related to energy, source, and accommodation, eventually filling the paleotopography. After initial buildup of the phylloid algal mounds, marine and nonmarine siliciclastics, with characteristics of both deltaic lobes and valley fills, were focused into low areas between mounds. After a sea-level rise, oolitic carbonates formed on highs and phylloid algal facies accumulated in lows. A shift in the source direction of siliciclastics resulted from flooding or filling of preexisting paleotopographic lows. Fine-grained silidclastics were concentrated in paleotopographic low areas and resulted in clay

  17. Evaluating Potential for Large Releases from CO2 StorageReservoirs: Analogs, Scenarios, and Modeling Needs

    SciTech Connect

    Birkholzer, Jens; Pruess, Karsten; Lewicki, Jennifer; Tsang,Chin-Fu; Karimjee, Anhar

    2005-09-19

    While the purpose of geologic storage of CO{sub 2} in deep saline formations is to trap greenhouse gases underground, the potential exists for CO{sub 2} to escape from the target reservoir, migrate upward along permeable pathways, and discharge at the land surface. Such discharge is not necessarily a serious concern, as CO{sub 2} is a naturally abundant and relatively benign gas in low concentrations. However, there is a potential risk to health, safety and environment (HSE) in the event that large localized fluxes of CO{sub 2} were to occur at the land surface, especially where CO{sub 2} could accumulate. In this paper, we develop possible scenarios for large CO{sub 2} fluxes based on the analysis of natural analogues, where large releases of gas have been observed. We are particularly interested in scenarios which could generate sudden, possibly self-enhancing, or even eruptive release events. The probability for such events may be low, but the circumstances under which they might occur and potential consequences need to be evaluated in order to design appropriate site selection and risk management strategies. Numerical modeling of hypothetical test cases is needed to determine critical conditions for such events, to evaluate whether such conditions may be possible at designated storage sites, and, if applicable, to evaluate the potential HSE impacts of such events and design appropriate mitigation strategies.

  18. Targeted pulmonary delivery of inducers of host macrophage autophagy as a potential host-directed chemotherapy of tuberculosis.

    PubMed

    Gupta, Anuradha; Misra, Amit; Deretic, Vojo

    2016-07-01

    One of the promising host-directed chemotherapeutic interventions in tuberculosis (TB) is based on inducing autophagy as an immune effector. Here we consider the strengths and weaknesses of potential autophagy-based pharmacological intervention. Using the existing drugs that induce autophagy is an option, but it has limitations given the broad role of autophagy in most cells, tissues, and organs. Thus, it may be desirable that the agent being used to modulate autophagy is applied in a targeted manner, e.g. delivered to affected tissues, with infected macrophages being an obvious choice. This review addresses the advantages and disadvantages of delivering drugs to induce autophagy in M. tuberculosis-infected macrophages. One option, already being tested in models, is to design particles for inhalation delivery to lung macrophages. The choice of drugs, drug release kinetics and intracellular residence times, non-target cell exposure and feasibility of use by patients is discussed. We term here this (still experimental) approach, of compartment-targeting, autophagy-based, host-directed therapy as "Track-II antituberculosis chemotherapy." PMID:26829287

  19. PCR detection and sequencing of parasite ITS-rDNA gene from reservoirs host of zoonotic cutaneous leishmaniasis in central Iran.

    PubMed

    Parvizi, Parviz; Moradi, Ghasem; Akbari, Ghasem; Farahmand, Mahin; Ready, Paul D; Piazak, Norair; Assmar, Mehdi; Amirkhani, Aref

    2008-11-01

    Leishmania major is the causative agent of zoonotic cutaneous leishmaniasis (ZCL) in which gerbils are the reservoir host. ZCL is of great public health importance in Iran. In the current investigation, nested polymerase chain reaction (PCR) protocols were used to amplify a region of the ribosomal RNA amplicon of Leishmania (ITS1-5.8S rRNA gene). The PCR assays detected L. major in three rodent species: Rhombomis opimus, Meriones lybicus and, for first time, Meriones persicus. L. major parasite was found in Natanz, Isfahan Province in the center of Iran in a focus of rural zoonotic cutaneous leishmaniasis. Four L. major infections were detected in R. opimus species, three in M. Lybicus, and two in M. persicus. All nine rodent infections of L. major were found to be the same haplotype based on the PCR detection and sequencing of parasite ITS-ribosomal DNA gene. In addition, also for the first time, the nested PCR assays detected Leishmania tropica only in one M. persicus. Allied to studies in country, the new findings mean that past conclusions about the reservoir of L. major in Iran must be treated with caution. Finding two Leishmania species in different rodent species as reservoir in Iran, therefore, careful molecular eco-epidemiological investigations will be an essential part of modeling the roles of different gerbil species in maintaining and spreading ZCL foci. PMID:18791741

  20. Free-living ciliates as potential reservoirs for eukaryotic parasites: occurrence of a trypanosomatid in the macronucleus of Euplotes encysticus

    PubMed Central

    2014-01-01

    Background Flagellates of the family Trypanosomatidae are obligate endoparasites, which can be found in various hosts. Several genera infect insects and occur as monoxenous parasites especially in representatives of Diptera and Hemiptera. These trypanosomatid flagellates probably share the worldwide distribution of their hosts, which are often infested by large numbers of endoparasites. Traditionally, their taxonomy was based on morphology, host origin, and life cycle. Here we report the characterization of a trypanosomatid infection detected in a protozoan, a ciliate collected from a polluted freshwater pond in a suburb of New Delhi (India). Methods Live observations and morphological studies applying light, fluorescence and transmission electron microscopy were conducted. Molecular analyses of host and parasite were performed and used for phylogenetic reconstructions and species (host) or genus level (parasite) identification. Results Although the morphological characteristics were not revealing, a high similarity of the trypanosomatids 18S rRNA gene sequence to Herpetomonas ztiplika and Herpetomonas trimorpha (Kinetoplastida, Trypanosomatidae), both parasites of biting midges (Culicoides kibunensis and Culicoides truncorum, respectively) allowed the assignment to this genus. The majority of the host population displayed a heavy infection that significantly affected the shape of the host macronucleus, which was the main site of parasite localization. In addition, the growth rate of host cultures, identified as Euplotes encysticus according to cell morphology and 18S rRNA gene sequence, was severely impacted by the infection. Conclusions The host-parasite system described here represents a recent example of free-living protists acting as environmental reservoirs for parasitic eukaryotic microorganisms. PMID:24774858

  1. Evaluating the impact of caprock and reservoir properties on potential risk of CO2 leakage after injection

    SciTech Connect

    Hou, Zhangshuan; Rockhold, Mark L.; Murray, Christopher J.

    2012-01-05

    Numerical models are essential tools for CO2 sequestration projects and should be included in the life cycle of a project. Common practice involves modeling the behavior of CO2 during and after injection using site-specific reservoir and caprock properties. Little has been done to systematically evaluate and compare the effects of a broad but realistic range of reservoir and caprock properties on potential CO2 leakage through caprock. Broad-based research addressing the impacts of caprock properties and their heterogeneity on seal permeation is absent. Efforts along this direction require obtaining information about the physically reasonable range of caprock and reservoir properties, effectively sampling the parameter space to fully explore the range of these properties, and performing flow and transport calculations using reliable numerical simulators. In this study, we identify the most important factors affecting CO2 leakage through intact caprock and try to understand the underlying mechanisms. We use caprock and reservoir properties from various field sites and literature data to identify the range of caprock thickness, permeability, and porosity that might occur. We use a quasi Monte Carlo sampling approach to ensure that the full range of caprock and seal properties is evaluated without bias. For each set of sampled properties, the migration of injected CO2 is simulated for up to 200 years using the water-salt-CO2 operational mode of the STOMP simulator. Preliminary results show that critical factors determining CO2 leakage rate through intact caprock are, in decreasing order of significance, the caprock thickness, caprock permeability, reservoir permeability, caprock porosity, and reservoir porosity. This study provides a function for prediction of potential CO2 leakage risk due to permeation of intact caprock, and identifies a range of acceptable seal thicknesses and permeability for sequestration projects. As a byproduct, the dependence of CO2 injectivity

  2. Host specificity in vascular epiphytes: a review of methodology, empirical evidence and potential mechanisms

    PubMed Central

    Wagner, Katrin; Mendieta-Leiva, Glenda; Zotz, Gerhard

    2015-01-01

    Information on the degree of host specificity is fundamental for an understanding of the ecology of structurally dependent plants such as vascular epiphytes. Starting with the seminal paper of A.F.W. Schimper on epiphyte ecology in the late 19th century over 200 publications have dealt with the issue of host specificity in vascular epiphytes. We review and critically discuss this extensive literature. The available evidence indicates that host ranges of vascular epiphytes are largely unrestricted while a certain host bias is ubiquitous. However, tree size and age and spatial autocorrelation of tree and epiphyte species have not been adequately considered in most statistical analyses. More refined null expectations and adequate replication are needed to allow more rigorous conclusions. Host specificity could be caused by a large number of tree traits (e.g. bark characteristics and architectural traits), which influence epiphyte performance. After reviewing the empirical evidence for their relevance, we conclude that future research should use a more comprehensive approach by determining the relative importance of various potential mechanisms acting locally and by testing several proposed hypotheses regarding the relative strength of host specificity in different habitats and among different groups of structurally dependent flora. PMID:25564514

  3. Refuge or Reservoir? The Potential Impacts of the Biofuel Crop Miscanthus x giganteus on a Major Pest of Maize

    PubMed Central

    Spencer, Joseph L.; Raghu, S.

    2009-01-01

    Background Interest in the cultivation of biomass crops like the C4 grass Miscanthus x giganteus (Miscanthus) is increasing as global demand for biofuel grows. In the US, Miscanthus is promoted as a crop well-suited to the Corn Belt where it could be cultivated on marginal land interposed with maize and soybean. Interactions (direct and indirect) of Miscanthus, maize, and the major Corn Belt pest of maize, the western corn rootworm, (Diabrotica virgifera virgifera LeConte, WCR) are unknown. Adding a perennial grass/biomass crop to this system is concerning since WCR is adapted to the continuous availability of its grass host, maize (Zea mays). Methodology/Principal Findings In a greenhouse and field study, we investigated WCR development and oviposition on Miscanthus. The suitability of Miscanthus for WCR development varied across different WCR populations. Data trends indicate that WCR populations that express behavioural resistance to crop rotation performed as well on Miscanthus as on maize. Over the entire study, total adult WCR emergence from Miscanthus (212 WCR) was 29.6% of that from maize (717 WCR). Adult dry weight was 75–80% that of WCR from maize; female emergence patterns on Miscanthus were similar to females developing on maize. There was no difference in the mean no. of WCR eggs laid at the base of Miscanthus and maize in the field. Conclusions/Significance Field oviposition and significant WCR emergence from Miscanthus raises many questions about the nature of likely interactions between Miscanthus, maize and WCR and the potential for Miscanthus to act as a refuge or reservoir for Corn Belt WCR. Responsible consideration of the benefits and risks associated with Corn Belt Miscanthus are critical to protecting an agroecosystem that we depend on for food, feed, and increasingly, fuel. Implications for European agroecosystems in which Miscanthus is being proposed are also discussed in light of the WCR's recent invasion into Europe. PMID:20016814

  4. Ichthyophonus-infected walleye pollock Theragra chalcogramma (Pallas) in the eastern Bering Sea: a potential reservoir of infections in the North Pacific.

    PubMed

    White, V C; Morado, J F; Friedman, C S

    2014-07-01

    In 2003, the Alaska walleye pollock industry reported product quality issues attributed to an unspecified parasite in fish muscle. Using molecular and histological methods, we identified the parasite in Bering Sea pollock as Ichthyophonus. Infected pollock were identified throughout the study area, and prevalence was greater in adults than in juveniles. This study not only provides the first documented report of Ichthyophonus in any fish species captured in the Bering Sea, but also reveals that the parasite has been present in this region for nearly 20 years and is not a recent introduction. Sequence analysis of 18S rDNA from Ichthyophonus in pollock revealed that consensus sequences were identical to published parasite sequences from Pacific herring and Yukon River Chinook salmon. Results from this study suggest potential for Ichthyophonus exposures from infected pollock via two trophic pathways; feeding on whole fish as prey and scavenging on industry-discharged offal. Considering the notable Ichthyophonus levels in pollock, the low host specificity of the parasite and the role of this host as a central prey item in the Bering Sea, pollock likely serve as a key Ichthyophonus reservoir for other susceptible hosts in the North Pacific. PMID:23941303

  5. Geology, reservoir engineering and methane hydrate potential of the Walakpa Gas Field, North Slope, Alaska

    SciTech Connect

    Glenn, R.K.; Allen, W.W.

    1992-12-01

    The Walakpa Gas Field, located near the city of Barrow on Alaska's North Slope, has been proven to be methane-bearing at depths of 2000--2550 feet below sea level. The producing formation is a laterally continuous, south-dipping, Lower Cretaceous shelf sandstone. The updip extent of the reservoir has not been determined by drilling, but probably extends to at least 1900 feet below sea level. Reservoir temperatures in the updip portion of the reservoir may be low enough to allow the presence of in situ methane hydrates. Reservoir net pay however, decreases to the north. Depths to the base of permafrost in the area average 940 feet. Drilling techniques and production configuration in the Walakpa field were designed to minimize formation damage to the reservoir sandstone and to eliminate methane hydrates formed during production. Drilling development of the Walakpa field was a sequential updip and lateral stepout from a previously drilled, structurally lower confirmation well. Reservoir temperature, pressure, and gas chemistry data from the development wells confirm that they have been drilled in the free-methane portion of the reservoir. Future studies in the Walakpa field are planned to determine whether or not a component of the methane production is due to the dissociation of updip in situ hydrates.

  6. Muddy and dolomitic rip-up clasts in Triassic fluvial sandstones: Origin and impact on potential reservoir properties (Argana Basin, Morocco)

    NASA Astrophysics Data System (ADS)

    Henares, Saturnina; Arribas, Jose; Cultrone, Giuseppe; Viseras, Cesar

    2016-06-01

    The significance of rip-up clasts as sandstone framework grains is frequently neglected in the literature being considered as accessory components in bulk sandstone composition. However, this study highlights the great value of muddy and dolomitic rip-up clast occurrence as: (a) information source about low preservation potential from floodplain deposits and (b) key element controlling host sandstone diagenetic evolution and thus ultimate reservoir quality. High-resolution petrographic analysis on Triassic fluvial sandstones from Argana Basin (T6 and T7/T8 units) highlights the significance of different types of rip-up clasts as intrabasinal framework components of continental sediments from arid climates. On the basis of their composition and ductility, three main types are distinguished: (a) muddy rip-up clasts, (b) dolomitic muddy rip-up clasts and (c) dolomite crystalline rip-up clasts. Spatial distribution of different types is strongly facies-related according to grain size. Origin of rip-up clasts is related to erosion of coeval phreatic dolocretes, in different development stages, and associated muddy floodplain sediments. Cloudy cores with abundant inclusions and clear outer rims of dolomite crystals suggest a first replacive and a subsequent displacive growth, respectively. Dolomite crystals are almost stoichiometric. This composition is very similar to that of early sandstone dolomite cement, supporting phreatic dolocretes as dolomite origin in both situations. Sandstone diagenesis is dominated by mechanical compaction and dolomite cementation. A direct correlation exists between: (1) muddy rip-up clast abundance and early reduction of primary porosity by compaction with irreversible loss of intergranular volume (IGV); and (2) occurrence of dolomitic rip-up clasts and dolomite cement nucleation in host sandstone, occluding adjacent pores but preserving IGV. Both processes affect reservoir quality by generation of vertical and 3D fluid flow baffles and

  7. Potential health impact and genotoxicity analysis of drinking source water from Liuxihe Reservoir (P.R. China).

    PubMed

    Wang, Weili; Li, Mei; Cui, Yibin; Gao, Xiangyu; Chen, Kun; Qian, Xin

    2014-05-01

    Water from the Liuxihe Reservoir (a source of drinking water for Guangzhou City, P. R. China) was analyzed for semi-volatile organic compounds (SVOCs) and the results were used for a potential health impact assessment and genotoxicity test with the microalgae Euglena gracilis. The SVOCs were tested using USEPA Method 525.2, and the health risk assessment was conducted at a screening level using the hazard quotient (HQ) approach. Alkaline single-cell gel electrophoresis (comet assay) was used to evaluate DNA damage and determine the genotoxicity of the source water. The concentrations of the SVOCs in Liuxihe Reservoir were very low and phthalic acid esters were the main SVOCs present. The mean HQ values of pollutants were all less than one, indicating no risk. However, the lifetime carcinogenic risks (LCRs) were found to be close to the threshold of 1.00E-5. The results show that the water in the Liuxihe Reservoir might pose a potential carcinogenic risk to local residents. The highly concentrated extracts of the water samples could induce DNA damage in the microalgal cells and a dose-effect relationship was identified. These results showed that Liuxihe Reservoir water, as a source of drinking water, could pose a potential LCR to local consumers. PMID:24429671

  8. Amoebae as Potential Environmental Hosts for Mycobacterium ulcerans and Other Mycobacteria, but Doubtful Actors in Buruli Ulcer Epidemiology

    PubMed Central

    Gryseels, Sophie; Amissah, Diana; Durnez, Lies; Vandelannoote, Koen; Leirs, Herwig; De Jonckheere, Johan; Portaels, Françoise; Ablordey, Anthony; Eddyani, Miriam

    2012-01-01

    Background The reservoir and mode of transmission of Mycobacterium ulcerans, the causative agent of Buruli ulcer, remain unknown. Ecological, genetic and epidemiological information nonetheless suggests that M. ulcerans may reside in aquatic protozoa. Methodology/Principal Findings We experimentally infected Acanthamoeba polyphaga with M. ulcerans and found that the bacilli were phagocytised, not digested and remained viable for the duration of the experiment. Furthermore, we collected 13 water, 90 biofilm and 45 detritus samples in both Buruli ulcer endemic and non-endemic communities in Ghana, from which we cultivated amoeboid protozoa and mycobacteria. M. ulcerans was not isolated, but other mycobacteria were as frequently isolated from intracellular as from extracellular sources, suggesting that they commonly infect amoebae in nature. We screened the samples as well as the amoeba cultures for the M. ulcerans markers IS2404, IS2606 and KR-B. IS2404 was detected in 2% of the environmental samples and in 4% of the amoeba cultures. The IS2404 positive amoeba cultures included up to 5 different protozoan species, and originated both from Buruli ulcer endemic and non-endemic communities. Conclusions/Significance This is the first report of experimental infection of amoebae with M. ulcerans and of the detection of the marker IS2404 in amoeba cultures isolated from the environment. We conclude that amoeba are potential natural hosts for M. ulcerans, yet remain sceptical about their implication in the transmission of M. ulcerans to humans and their importance in the epidemiology of Buruli ulcer. PMID:22880141

  9. Recurrent paediatric pinworm infection of the vagina as a potential reservoir for Enterobius vermicularis.

    PubMed

    Kashyap, B; Samantray, J C; Kumar, S; Jhamb, R; Singh, A K; Kaur, I R

    2014-09-01

    Enterobius vermicularis infection remains one of the most common parasitic infections, particularly prevalent in children. Enterobiasis, although not usually dangerous, may cause significant morbidity. Elimination of the parasite from a family or an institution often poses problems, either because of an incomplete cure or re-infection. While there have been limited reports of ectopic enterobiasis throughout the world, ours is probably one of the rarest reports of recurrent vaginal E. vermicularis infection in the absence of any gastrointestinal symptoms despite complete treatment. A 4-year-old girl presented with recurrent episodes of vulval itching on 3-4 occasions over 2 years. There was no pruritis ani nor urinary/gastrointestinal complaints. The vulva was inflamed with 4-5 living worms, 6-7 mm in length, emerging from the anterior vaginal fornix, but with no vaginal discharge. Direct microscopic examination of vaginal swabs revealed adult worms of Enterobius but no eggs. Repeated stool samples from the patient, parents and a sibling were negative. The patient was treated orally with 100 mg of mebendazole for 3 days followed by two more courses at 3-week intervals over a period of 3 months. Recurrent vaginal enterobiasis despite complete treatment and in the absence of any gastrointestinal involvement suggests that the vagina is a potential reservoir for E. vermicularis, which supports the theory of rare ectopic enterobiasis through the ascending pathway of the female genital tract. PMID:23721910

  10. Tick-Borne Transmission of Two Genetically Distinct Anaplasma marginale Strains following Superinfection of the Mammalian Reservoir Host

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Strain superinfection affects the dynamics of epidemiological spread of pathogens through a host population. Superinfection has recently been shown to occur for genetically distinct strains of the tick-borne pathogen Anaplasma marginale that encode distinctly different surface protein variants. Supe...

  11. Current state, sources, and potential risk of heavy metals in sediments of Three Gorges Reservoir, China.

    PubMed

    Bing, Haijian; Zhou, Jun; Wu, Yanhong; Wang, Xiaoxiao; Sun, Hongyang; Li, Rui

    2016-07-01

    Heavy metal (HM) contamination in sediments of Three Gorges Reservoir (TGR) is a particularly important issue for the safety of water quality due to the potential threats of metal toxicity to local and downstream human health. Surface sediments from riparian and submerged areas in the entire TGR mainstream were collected in 2014 to investigate the spatial distribution of HMs (Cd, Cu, Pb, and Zn), identify their possible sources, and assess their potential risk by multiple indices and metal fraction. Results showed that the concentrations of HMs in the sediments increased after the TGR operation, but were lower than those in other Chinese rivers of developed areas. The acid-soluble Cd accounted for more than 50% of total Cd in the sediments, whereas that of other HMs was very low. The Cd concentrations in the riparian sediments increased towards the dam; however, other metals in the riparian sediments and all HMs in the submerged sediments did not show any regular variation trend spatially. The stocks of HMs were significantly higher in the submerged sediments than in the riparian sediments. The high accumulation of HMs in the riparian sediments emerged between Fuling and Fengjie, and those in the submerged sediments existed in the near dam areas. Grain size and Fe/Mn oxides controlled the mobility and transfer of HMs in the sediments. Human activity in the catchment including industrial and agricultural production, shipping industry, mining, etc., increased inputs of HMs in the sediments, and altered their spatial distribution patterns. The sediments were moderately to highly contaminated by Cd, and slightly contaminated by other HMs. The results indicate the current priority of Cd contamination in the TGR, and will conduce to ecological protection in the TGR region. PMID:27131806

  12. Infection levels of proteocephalidean cestodes in Cichla piquiti (Osteichthyes: Cichlidae) of the Volta Grande Reservoir, Minas Gerais, Brazil, relative to host body weight and gender.

    PubMed

    Martins, M L; Pereira, J; de Chambrier, A; Mouriño, J L P

    2011-12-01

    We evaluated the relationship between infection by proteocephalid cestodes and the sex and weight classes of tucunaré (Cichla piquiti) captured between August 1999 and June 2001 in the Volta Grande Reservoir, Minas Gerais, Brazil. A total of 96 fish, 75.9 ± 9.3% males and 88.9 ± 6.4% females, were parasitized by Proteocephalus macrophallus and P. microscopicus, with total mean intensities of 76.6 ± 23.9 and 145.2 ± 36.7, respectively, during this period. In the majority of the months analysed, males showed 71.4-100% prevalence of parasitism and females 80-100%. Although there was no significant difference, females showed a higher mean intensity of infection (145.2 ± 36.7) than males (76.6 ± 23.9). Fish weighing 300-800 g showed a higher mean abundance of parasites (P < 0.05) compared with the biggest specimens weighing 801-2750 g. Analysing both males and females together, the greatest mean intensities of infection were found in October and December (P < 0.05) independent of the year, which coincides with the months of highest rainfall. These results show that fish living in reservoirs may be more susceptible to intermediate hosts than those that live in rivers. PMID:21208512

  13. Geology and hydrocarbon reservoir potential of the Pituil and Barreal Formations, Calingasta Valley, western Argentina

    SciTech Connect

    Janks, J.S. ); Lopez-Gamundi, O.R.; Siegele, P.K. )

    1990-05-01

    The Calingasta basin is one of the north-south-trending intermontane basins informally known as the Bolsones. The stratigraphy consists of lower Paleozoic metamorphic basement overlain by sediments and volcanics of upper Paleozoic through Cenozoic age. Three distinct geological provinces are recognized within the Bolsones region: Sierras Pampeanas, Precordillera, and Cordillera Frontal. Outcrop samples from the Permian Pituil and Triassic Barreal formations from the Tamberias region of the Sierras Pampeanas province were analyzed to determine the composition, porosity type, and diagenetic modification. The Pituil formation is a shallow marine sequence overlying Carboniferous glaciomarine sediments. They grade eastward into nonmarine lacustrine, deltaic, and fluvial sandstones. The rocks are fine- to medium-grained litharenites with porosities of 6-10 %. Diagenetic modifications include quartz overgrowths, unstable grain dissolution, carbonate cements, pyrite, and kaolinite. Triassic deposits occur on the western flank of the Precordillera, overlying a basement of volcanics and metasedimentary rocks. The Triassic sediments can be several hundreds of meters thick; deposition occurred in fluvial to lacustrine environments. These clastic sediments are considered to be northern extensions of the hydrocarbon-productive sediments in the Cuyo basin. The Barreal formation ranges from clay-rich lithic wackes and shales to conglomeratic, volcaniclastic litharenites and sublitharenites. Framework grains consist of quartz, feldspars, rock fragments, and, rarely, glass shards. Cements include zeolites, carbonates, chalcedony, pyrite, and clays. Tuffs are found at certain intervals within the section; alteration to iron-rich smectite is common. Reservoir potential is highly variable. Porosities range from as low as 5% to greater than 25%.

  14. Real-Time PCR Investigation of Potential Vectors, Reservoirs, and Shedding Patterns of Feline Hemotropic Mycoplasmas▿

    PubMed Central

    Willi, Barbara; Boretti, Felicitas S.; Meli, Marina L.; Bernasconi, Marco V.; Casati, Simona; Hegglin, Daniel; Puorger, Maria; Neimark, Harold; Cattori, Valentino; Wengi, Nicole; Reusch, Claudia E.; Lutz, Hans; Hofmann-Lehmann, Regina

    2007-01-01

    Three hemotropic mycoplasmas have been identified in pet cats: Mycoplasma haemofelis, “Candidatus Mycoplasma haemominutum,” and “Candidatus Mycoplasma turicensis.” The way in which these agents are transmitted is largely unknown. Thus, this study aimed to investigate fleas, ticks, and rodents as well as saliva and feces from infected cats for the presence of hemotropic mycoplasmas, to gain insight into potential transmission routes for these agents. DNA was extracted from arthropods and from rodent blood or tissue samples from Switzerland and from salivary and fecal swabs from two experimentally infected and six naturally infected cats. All samples were analyzed with real-time PCR, and some positive samples were confirmed by sequencing. Feline hemotropic mycoplasmas were detected in cat fleas and in a few Ixodes sp. and Rhipicephalus sp. ticks collected from animals but not in ticks collected from vegetation or from rodent samples, although the latter were frequently Mycoplasma coccoides PCR positive. When shedding patterns of feline hemotropic mycoplasmas were investigated, “Ca. Mycoplasma turicensis” DNA was detected in saliva and feces at the early but not at the late phase of infection. M. haemofelis and “Ca. Mycoplasma haemominutum” DNA was not amplified from saliva and feces of naturally infected cats, despite high hemotropic mycoplasma blood loads. Our results suggest that besides an ostensibly indirect transmission by fleas, direct transmission through saliva and feces at the early phase of infection could play a role in the epizootiology of feline hemotropic mycoplasmas. Neither the investigated tick nor the rodent population seems to represent a major reservoir for feline hemotropic mycoplasmas in Switzerland. PMID:17468284

  15. Real-time PCR investigation of potential vectors, reservoirs, and shedding patterns of feline hemotropic mycoplasmas.

    PubMed

    Willi, Barbara; Boretti, Felicitas S; Meli, Marina L; Bernasconi, Marco V; Casati, Simona; Hegglin, Daniel; Puorger, Maria; Neimark, Harold; Cattori, Valentino; Wengi, Nicole; Reusch, Claudia E; Lutz, Hans; Hofmann-Lehmann, Regina

    2007-06-01

    Three hemotropic mycoplasmas have been identified in pet cats: Mycoplasma haemofelis, "Candidatus Mycoplasma haemominutum," and "Candidatus Mycoplasma turicensis." The way in which these agents are transmitted is largely unknown. Thus, this study aimed to investigate fleas, ticks, and rodents as well as saliva and feces from infected cats for the presence of hemotropic mycoplasmas, to gain insight into potential transmission routes for these agents. DNA was extracted from arthropods and from rodent blood or tissue samples from Switzerland and from salivary and fecal swabs from two experimentally infected and six naturally infected cats. All samples were analyzed with real-time PCR, and some positive samples were confirmed by sequencing. Feline hemotropic mycoplasmas were detected in cat fleas and in a few Ixodes sp. and Rhipicephalus sp. ticks collected from animals but not in ticks collected from vegetation or from rodent samples, although the latter were frequently Mycoplasma coccoides PCR positive. When shedding patterns of feline hemotropic mycoplasmas were investigated, "Ca. Mycoplasma turicensis" DNA was detected in saliva and feces at the early but not at the late phase of infection. M. haemofelis and "Ca. Mycoplasma haemominutum" DNA was not amplified from saliva and feces of naturally infected cats, despite high hemotropic mycoplasma blood loads. Our results suggest that besides an ostensibly indirect transmission by fleas, direct transmission through saliva and feces at the early phase of infection could play a role in the epizootiology of feline hemotropic mycoplasmas. Neither the investigated tick nor the rodent population seems to represent a major reservoir for feline hemotropic mycoplasmas in Switzerland. PMID:17468284

  16. Seroprevalence of Trypanosoma cruzi Among Eleven Potential Reservoir Species from Six States Across the Southern United States

    PubMed Central

    Brown, Emily L.; Roellig, Dawn M.; Gompper, Matthew E.; Monello, Ryan J.; Wenning, Krista M.; Gabriel, Mourad W.

    2010-01-01

    Abstract Trypanosoma cruzi, the causative agent of Chagas' disease, is a substantial public health concern in Latin America. Although rare in humans and domestic animals in the United States, T. cruzi is commonly detected in some wildlife species, most commonly raccoons (Procyon lotor) and Virginia opossums (Didelphis virginiana). To increase our understanding of the reservoir host species range and geographic distribution, 11 species of mammals from six states spanning the known range of T. cruzi (Arizona, California, Florida, Georgia, Missouri, and Virginia) were tested for antibodies to T. cruzi using indirect immunofluorescent antibody testing. In addition, culture isolation attempts were conducted on a limited number of animals from Georgia and Florida. Evidence of T. cruzi was found in every state except California; however, low numbers of known reservoirs were tested in California. In general, the highest seroprevalence rates were found in raccoons (0–68%) and opossums (17–52%), but antibodies to T. cruzi were also detected in small numbers of striped skunks (Mephitis mephitis) from Arizona and Georgia, bobcats (Lynx rufus) from Georgia, two coyotes (Canis latrans) from Georgia and Virginia, and a ringtail (Bassariscus astutus) from Arizona. Culture-based prevalence rates for raccoons were significantly greater than those for opossums; however, seroprevalences of raccoons and opossums from several geographic locations in Georgia and Florida were not different, indicating that exposure rates of these two species are similar within these areas. For both raccoons and opossums, seroprevalence was significantly higher in females than in males. No difference was detected in seroprevalence between adults and juveniles and between animals caught in urban and rural locations. Our results indicate that T. cruzi prevalence varies by host species, host characteristics, and geographic region and provides data to guide future studies on the natural history of T. cruzi

  17. Seroprevalence of Trypanosoma cruzi among eleven potential reservoir species from six states across the southern United States.

    PubMed

    Brown, Emily L; Roellig, Dawn M; Gompper, Matthew E; Monello, Ryan J; Wenning, Krista M; Gabriel, Mourad W; Yabsley, Michael J

    2010-10-01

    Trypanosoma cruzi, the causative agent of Chagas' disease, is a substantial public health concern in Latin America. Although rare in humans and domestic animals in the United States, T. cruzi is commonly detected in some wildlife species, most commonly raccoons (Procyon lotor) and Virginia opossums (Didelphis virginiana). To increase our understanding of the reservoir host species range and geographic distribution, 11 species of mammals from six states spanning the known range of T. cruzi (Arizona, California, Florida, Georgia, Missouri, and Virginia) were tested for antibodies to T. cruzi using indirect immunofluorescent antibody testing. In addition, culture isolation attempts were conducted on a limited number of animals from Georgia and Florida. Evidence of T. cruzi was found in every state except California; however, low numbers of known reservoirs were tested in California. In general, the highest seroprevalence rates were found in raccoons (0-68%) and opossums (17-52%), but antibodies to T. cruzi were also detected in small numbers of striped skunks (Mephitis mephitis) from Arizona and Georgia, bobcats (Lynx rufus) from Georgia, two coyotes (Canis latrans) from Georgia and Virginia, and a ringtail (Bassariscus astutus) from Arizona. Culture-based prevalence rates for raccoons were significantly greater than those for opossums; however, seroprevalences of raccoons and opossums from several geographic locations in Georgia and Florida were not different, indicating that exposure rates of these two species are similar within these areas. For both raccoons and opossums, seroprevalence was significantly higher in females than in males. No difference was detected in seroprevalence between adults and juveniles and between animals caught in urban and rural locations. Our results indicate that T. cruzi prevalence varies by host species, host characteristics, and geographic region and provides data to guide future studies on the natural history of T. cruzi in the

  18. Vertebrate Hosts as Islands: Dynamics of Selection, Immigration, Loss, Persistence, and Potential Function of Bacteria on Salamander Skin

    PubMed Central

    Loudon, Andrew H.; Venkataraman, Arvind; Van Treuren, William; Woodhams, Douglas C.; Parfrey, Laura Wegener; McKenzie, Valerie J.; Knight, Rob; Schmidt, Thomas M.; Harris, Reid N.

    2016-01-01

    Skin bacterial communities can protect amphibians from a fungal pathogen; however, little is known about how these communities are maintained. We used a neutral model of community ecology to identify bacteria that are maintained on salamanders by selection or by dispersal from a bacterial reservoir (soil) and ecological drift. We found that 75% (9/12) of bacteria that were consistent with positive selection, <1% of bacteria that were consistent with random dispersal and none of the bacteria that were consistent under negative selection had a 97% or greater match to antifungal isolates. Additionally we performed an experiment where salamanders were either provided or denied a bacterial reservoir and estimated immigration and loss (emigration and local extinction) rates of bacteria on salamanders in both treatments. Loss was strongly related to bacterial richness, suggesting competition is important for structuring the community. Bacteria closely related to antifungal isolates were more likely to persist on salamanders with or without a bacterial reservoir, suggesting they had a competitive advantage. Furthermore, over-represented and under-represented operational taxonomic units (OTUs) had similar persistence on salamanders when a bacterial reservoir was present. However, under-represented OTUs were less likely to persist in the absence of a bacterial reservoir, suggesting that the over-represented and under-represented bacteria were selected against or for on salamanders through time. Our findings from the neutral model, migration and persistence analyses show that bacteria that exhibit a high similarity to antifungal isolates persist on salamanders, which likely protect hosts against pathogens and improve fitness. This research is one of the first to apply ecological theory to investigate assembly of host associated-bacterial communities, which can provide insights for probiotic bioaugmentation as a conservation strategy against disease. PMID:27014249

  19. Vertebrate Hosts as Islands: Dynamics of Selection, Immigration, Loss, Persistence, and Potential Function of Bacteria on Salamander Skin.

    PubMed

    Loudon, Andrew H; Venkataraman, Arvind; Van Treuren, William; Woodhams, Douglas C; Parfrey, Laura Wegener; McKenzie, Valerie J; Knight, Rob; Schmidt, Thomas M; Harris, Reid N

    2016-01-01

    Skin bacterial communities can protect amphibians from a fungal pathogen; however, little is known about how these communities are maintained. We used a neutral model of community ecology to identify bacteria that are maintained on salamanders by selection or by dispersal from a bacterial reservoir (soil) and ecological drift. We found that 75% (9/12) of bacteria that were consistent with positive selection, <1% of bacteria that were consistent with random dispersal and none of the bacteria that were consistent under negative selection had a 97% or greater match to antifungal isolates. Additionally we performed an experiment where salamanders were either provided or denied a bacterial reservoir and estimated immigration and loss (emigration and local extinction) rates of bacteria on salamanders in both treatments. Loss was strongly related to bacterial richness, suggesting competition is important for structuring the community. Bacteria closely related to antifungal isolates were more likely to persist on salamanders with or without a bacterial reservoir, suggesting they had a competitive advantage. Furthermore, over-represented and under-represented operational taxonomic units (OTUs) had similar persistence on salamanders when a bacterial reservoir was present. However, under-represented OTUs were less likely to persist in the absence of a bacterial reservoir, suggesting that the over-represented and under-represented bacteria were selected against or for on salamanders through time. Our findings from the neutral model, migration and persistence analyses show that bacteria that exhibit a high similarity to antifungal isolates persist on salamanders, which likely protect hosts against pathogens and improve fitness. This research is one of the first to apply ecological theory to investigate assembly of host associated-bacterial communities, which can provide insights for probiotic bioaugmentation as a conservation strategy against disease. PMID:27014249

  20. Bacterial community diversity in a low-permeability oil reservoir and its potential for enhancing oil recovery.

    PubMed

    Xiao, Meng; Zhang, Zhong-Zhi; Wang, Jing-Xiu; Zhang, Guang-Qing; Luo, Yi-Jing; Song, Zhao-Zheng; Zhang, Ji-Yuan

    2013-11-01

    The diversity of indigenous bacterial community and the functional species in the water samples from three production wells of a low permeability oil reservoir was investigated by high-throughput sequencing technology. The potential of application of indigenous bacteria for enhancing oil recovery was evaluated by examination of the effect of bacterial stimulation on the formation water-oil-rock surface interactions and micromodel test. The results showed that production well 88-122 had the most diverse bacterial community and functional species. The broth of indigenous bacteria stimulated by an organic nutrient activator at aerobic condition changed the wettability of the rock surface from oil-wet to water-wet. Micromodel test results showed that flooding using stimulated indigenous bacteria following water flooding improved oil recovery by 6.9% and 7.7% in fractured and unfractured micromodels, respectively. Therefore, the zone of low permeability reservoir has a great potential for indigenous microbial enhanced oil recovery. PMID:23994957

  1. Leptospira Serovars for Diagnosis of Leptospirosis in Humans and Animals in Africa: Common Leptospira Isolates and Reservoir Hosts.

    PubMed

    Mgode, Georgies F; Machang'u, Robert S; Mhamphi, Ginethon G; Katakweba, Abdul; Mulungu, Loth S; Durnez, Lies; Leirs, Herwig; Hartskeerl, Rudy A; Belmain, Steven R

    2015-12-01

    The burden of leptospirosis in humans and animals in Africa is higher than that reported from other parts of the world. However, the disease is not routinely diagnosed in the continent. One of major factors limiting diagnosis is the poor availability of live isolates of locally circulating Leptospira serovars for inclusion in the antigen panel of the gold standard microscopic agglutination test (MAT) for detecting antibodies against leptospirosis. To gain insight in Leptospira serovars and their natural hosts occurring in Tanzania, concomitantly enabling the improvement of the MAT by inclusion of fresh local isolates, a total of 52 Leptospira isolates were obtained from fresh urine and kidney homogenates, collected between 1996 and 2006 from small mammals, cattle and pigs. Isolates were identified by serogrouping, cross agglutination absorption test (CAAT), and molecular typing. Common Leptospira serovars with their respective animal hosts were: Sokoine (cattle and rodents); Kenya (rodents and shrews); Mwogolo (rodents); Lora (rodents); Qunjian (rodent); serogroup Grippotyphosa (cattle); and an unknown serogroup from pigs. Inclusion of local serovars particularly serovar Sokoine in MAT revealed a 10-fold increase in leptospirosis prevalence in Tanzania from 1.9% to 16.9% in rodents and 0.26% to 10.75% in humans. This indicates that local serovars are useful for diagnosis of human and animal leptospirosis in Tanzania and other African countries. PMID:26624890

  2. Leptospira Serovars for Diagnosis of Leptospirosis in Humans and Animals in Africa: Common Leptospira Isolates and Reservoir Hosts

    PubMed Central

    Mgode, Georgies F.; Machang’u, Robert S.; Mhamphi, Ginethon G.; Katakweba, Abdul; Mulungu, Loth S.; Durnez, Lies; Leirs, Herwig; Hartskeerl, Rudy A.; Belmain, Steven R.

    2015-01-01

    The burden of leptospirosis in humans and animals in Africa is higher than that reported from other parts of the world. However, the disease is not routinely diagnosed in the continent. One of major factors limiting diagnosis is the poor availability of live isolates of locally circulating Leptospira serovars for inclusion in the antigen panel of the gold standard microscopic agglutination test (MAT) for detecting antibodies against leptospirosis. To gain insight in Leptospira serovars and their natural hosts occurring in Tanzania, concomitantly enabling the improvement of the MAT by inclusion of fresh local isolates, a total of 52 Leptospira isolates were obtained from fresh urine and kidney homogenates, collected between 1996 and 2006 from small mammals, cattle and pigs. Isolates were identified by serogrouping, cross agglutination absorption test (CAAT), and molecular typing. Common Leptospira serovars with their respective animal hosts were: Sokoine (cattle and rodents); Kenya (rodents and shrews); Mwogolo (rodents); Lora (rodents); Qunjian (rodent); serogroup Grippotyphosa (cattle); and an unknown serogroup from pigs. Inclusion of local serovars particularly serovar Sokoine in MAT revealed a 10-fold increase in leptospirosis prevalence in Tanzania from 1.9% to 16.9% in rodents and 0.26% to 10.75% in humans. This indicates that local serovars are useful for diagnosis of human and animal leptospirosis in Tanzania and other African countries. PMID:26624890

  3. Potentially bioavailable iron delivery by iceberg-hosted sediments and atmospheric dust to the polar oceans

    NASA Astrophysics Data System (ADS)

    Raiswell, Robert; Hawkings, Jon R.; Benning, Liane G.; Baker, Alex R.; Death, Ros; Albani, Samuel; Mahowald, Natalie; Krom, Michael D.; Poulton, Simon W.; Wadham, Jemma; Tranter, Martyn

    2016-07-01

    Iceberg-hosted sediments and atmospheric dust transport potentially bioavailable iron to the Arctic and Southern oceans as ferrihydrite. Ferrihydrite is nanoparticulate and more soluble, as well as potentially more bioavailable, than other iron (oxyhydr)oxide minerals (lepidocrocite, goethite, and hematite). A suite of more than 50 iceberg-hosted sediments contain a mean content of 0.076 wt % Fe as ferrihydrite, which produces iceberg-hosted Fe fluxes ranging from 0.7 to 5.5 and 3.2 to 25 Gmoles yr-1 to the Arctic and Southern oceans respectively. Atmospheric dust (with little or no combustion products) contains a mean ferrihydrite Fe content of 0.038 wt % (corresponding to a fractional solubility of ˜ 1 %) and delivers much smaller Fe fluxes (0.02-0.07 Gmoles yr-1 to the Arctic Ocean and 0.0-0.02 Gmoles yr-1 to the Southern Ocean). New dust flux data show that most atmospheric dust is delivered to sea ice where exposure to melting/re-freezing cycles may enhance fractional solubility, and thus fluxes, by a factor of approximately 2.5. Improved estimates for these particulate sources require additional data for the iceberg losses during fjord transit, the sediment content of icebergs, and samples of atmospheric dust delivered to the polar regions.

  4. A potential target gene for the host-directed therapy of mycobacterial infection in murine macrophages

    PubMed Central

    Bao, Zhang; Chen, Ran; Zhang, Pei; Lu, Shan; Chen, Xing; Yao, Yake; Jin, Xiaozheng; Sun, Yilan; Zhou, Jianying

    2016-01-01

    Mycobacterium tuberculosis (MTB), one of the major bacterial pathogens for lethal infectious diseases, is capable of surviving within the phagosomes of host alveolar macrophages; therefore, host genetic variations may alter the susceptibility to MTB. In this study, to identify host genes exploited by MTB during infection, genes were non-selectively inactivated using lentivirus-based antisense RNA methods in RAW264.7 macrophages, and the cells that survived virulent MTB infection were then screened. Following DNA sequencing of the surviving cell clones, 26 host genes affecting susceptibility to MTB were identified and their pathways were analyzed by bioinformatics analysis. In total, 9 of these genes were confirmed as positive regulators of collagen α-5(IV) chain (Col4a5) expression, a gene encoding a type IV collagen subunit present on the cell surface. The knockdown of Col4a5 consistently suppressed intracellular mycobacterial viability, promoting the survival of RAW264.7 macrophages following mycobacterial infection. Furthermore, Col4a5 deficiency lowered the pH levels of intracellular vesicles, including endosomes, lysosomes and phagosomes in the RAW264.7 cells. Finally, the knockdown of Col4a5 post-translationally increased microsomal vacuolar-type H+-ATPase activity in macrophages, leading to the acidification of intracellular vesicles. Our findings reveal a novel role for Col4a5 in the regulation of macrophage responses to mycobacterial infection and identify Col4a5 as a potential target for the host-directed anti-mycobacterial therapy. PMID:27432120

  5. A potential target gene for the host-directed therapy of mycobacterial infection in murine macrophages.

    PubMed

    Bao, Zhang; Chen, Ran; Zhang, Pei; Lu, Shan; Chen, Xing; Yao, Yake; Jin, Xiaozheng; Sun, Yilan; Zhou, Jianying

    2016-09-01

    Mycobacterium tuberculosis (MTB), one of the major bacterial pathogens for lethal infectious diseases, is capable of surviving within the phagosomes of host alveolar macrophages; therefore, host genetic variations may alter the susceptibility to MTB. In this study, to identify host genes exploited by MTB during infection, genes were non-selectively inactivated using lentivirus-based antisense RNA methods in Raw264.7 macrophages, and the cells that survived virulent MTB infection were then screened. Following DNA sequencing of the surviving cell clones, 26 host genes affecting susceptibility to MTB were identified and their pathways were analyzed by bioinformatics analysis. In total, 9 of these genes were confirmed as positive regulators of collagen α-5(IV) chain (Col4a5) expression, a gene encoding a type IV collagen subunit present on the cell surface. The knockdown of Col4a5 consistently suppressed intracellular mycobacterial viability, promoting the survival of Raw264.7 macrophages following mycobacterial infection. Furthermore, Col4a5 deficiency lowered the pH levels of intracellular vesicles, including endosomes, lysosomes and phagosomes in the Raw264.7 cells. Finally, the knockdown of Col4a5 post-translationally increased microsomal vacuolar-type H+-ATPase activity in macrophages, leading to the acidification of intracellular vesicles. Our findings reveal a novel role for Col4a5 in the regulation of macrophage responses to mycobacterial infection and identify Col4a5 as a potential target for the host-directed anti-mycobacterial therapy. PMID:27432120

  6. Studies on rodents role as reservoir hosts of leishmaniasis with specical reference to their ectoparasites in Suez Governorate.

    PubMed

    Shoukry, Nahla M; El-Naggar, Mostafa H; Darwish, Ahmed B; Soliman, Belal A; El-Sawaf, Bahira M

    2006-04-01

    The distribution of rodents was studied in three different habitats. Seven rodent species were identified: Rattus norvegicus, R. alexandrinus, R. frugivorous, Mus musculus, Acomys russatus, Meriones sacramenti and Gerbillus pyramidum. The species distribution varied with the habitat type. The highest density of rodents was in July and August and the lowest one was in January. However, some species were collected all the year round. The rodents were investigated for the endo- and ecto-parasites. No Leishmania parasites were found. The ectoparasites were: Xenopsylla cheopis, Leptopsylla segnis and Ctenocephalides felis, Polyplax spinulos, Hyalomma dromedarii (nymph) and Echinolaelaps echidninus and Hemolaelaps glassgowi. Ecto-parasites were on rodents all year-round in domestic habitat and peridomestic habitats. In wild one, ecto-parasites activity was from March to December. The rodents' role as reservoir for L. major was experimentally studied. Rodents inoculated with L. major together with hamster and BALB-c mice developed cutaneous lesions. The active lesions, the rodents' ecological habitats and the presence of insect-vector may pave the way to an epidemic zoonotic leishmaniasis role. PMID:16605103

  7. Shale, mudstone, and claystone as potential host rocks for underground emplacement of waste

    USGS Publications Warehouse

    Merewether, E.A.; Sharps, J.A.; Gill, J.R.; Cooley, M.E.

    1973-01-01

    In this report, the suitability of the argillaceous formations in the conterminous United States as host rocks for underground waste emplacement is reviewed in terms of available geologic information. The strata are considered mainly according to their dimensions, Depth, composition, permeability, structural and seismic history, and to the extent of drilling in the area. Shale, mudstone, and claystone of marine origin in areas of little structural deformation and seismic risks are generally the most promising. These include the Ohio Shale of Devonian age in northern Ohio and the Devonian-Mississippian Ellsworth Shale and Mississippian Coldwater Shale in Michigan. In-the Rocky Mountain states, the Pierre Shale and other thick shales of Late Cretaceous age are also potential host rocks.

  8. Modeling pollution potential input from the drainage basin into Barra Bonita reservoir, São Paulo - Brazil.

    PubMed

    Prado, R B; Novo, E M L M

    2015-05-01

    In this study multi-criteria modeling tools are applied to map the spatial distribution of drainage basin potential to pollute Barra Bonita Reservoir, São Paulo State, Brasil. Barra Bonita Reservoir Basin had undergone intense land use/land cover changes in the last decades, including the fast conversion from pasture into sugarcane. In this respect, this study answers to the lack of information about the variables (criteria) which affect the pollution potential of the drainage basin by building a Geographic Information System which provides their spatial distribution at sub-basin level. The GIS was fed by several data (geomorphology, pedology, geology, drainage network and rainfall) provided by public agencies. Landsat satellite images provided land use/land cover map for 2002. Ratings and weights of each criterion defined by specialists supported the modeling process. The results showed a wide variability in the pollution potential of different sub-basins according to the application of different criterion. If only land use is analyzed, for instance, less than 50% of the basin is classified as highly threatening to water quality and include sub basins located near the reservoir, indicating the importance of protection areas at the margins. Despite the subjectivity involved in the weighing processes, the multi-criteria analysis model allowed the simulation of scenarios which support rational land use polices at sub-basin level regarding the protection of water resources. PMID:26132013

  9. Reservoir framework and exploration potential of the Cleveland Formation (Western Anadarko Basin) using a sequence-stratigraphic model

    SciTech Connect

    Hentz, T.F. )

    1993-09-01

    The Upper Pennsylvanian (lower Missourian) Cleveland Formation has yielded more than 435 bcf on natural gas and more than 18.2 MM bbl of oil from a seven-county tight-gas area in the northeastern Texas panhandle. Regional study of the Cleveland and underlying Desmoinesian Marmaton Group siliciclastics established the sequence-stratigraphic framework to clarify the vertical and areal occurrence of Cleveland reservoirs, seals, and source rocks. Regionally distinctive facies stacking patterns in the study interval compose a sequence-stratigraphic framework of several westerly sourced systems tracts and three depositional sequences. Sequence 1 (S1) is characterized by landward- and seaward-stepping deltaic/strand-plain cycles (parasequences) deposited on the top-of-Oswego type 1 sequence boundary. A relative sea level drop with the onset of S2 deposition initiated development of a sand-rich incised-valley system (LST:iv) in the middle Cleveland that extended basinward of the lower Cleveland shelf break. Subsequent coastal onlap by thin deltaic systems of the overlying TST marks the start of decreased sediment influx during late Cleveland deposition, resulting in thinning of parasequences and an increase in carbonate beds in upper S2 and S3. Stratigraphic traps and pinch out of reservoir facies within small, southeast-plunging anticlines compose most traps in the producing area. Proximal delta-front and fluvial sandstones of the Cleveland upper HST and overlying LST:iv, respectively, are the primary reservoirs. The high-TOC, top-of-Marmaton marine-condensed section and thick prodeltaic and lower distal delta-front shales within the lower Cleveland HST are the probable source rocks. Distal deltaic shales of the middle Cleveland TST form most reservoir seals. Potential new reservoirs should be targeted at the updip terminations of systems tracts, at lapout positions of individual sand-rich HST and TST parasequences, and along LST:iv valley-margin stratal terminations.

  10. Volcanic settings and their reservoir potential: An outcrop analog study on the Miocene Tepoztlán Formation, Central Mexico

    NASA Astrophysics Data System (ADS)

    Lenhardt, Nils; Götz, Annette E.

    2011-07-01

    The reservoir potential of volcanic and associated sedimentary rocks is less documented in regard to groundwater resources, and oil and gas storage compared to siliciclastic and carbonate systems. Outcrop analog studies within a volcanic setting enable to identify spatio-temporal architectural elements and geometric features of different rock units and their petrophysical properties such as porosity and permeability, which are important information for reservoir characterization. Despite the wide distribution of volcanic rocks in Mexico, their reservoir potential has been little studied in the past. In the Valley of Mexico, situated 4000 m above the Neogene volcanic rocks, groundwater is a matter of major importance as more than 20 million people and 42% of the industrial capacity of the Mexican nation depend on it for most of their water supply. Here, we present porosity and permeability data of 108 rock samples representing five different lithofacies types of the Miocene Tepoztlán Formation. This 800 m thick formation mainly consists of pyroclastic rocks, mass flow and fluvial deposits and is part of the southern Transmexican Volcanic Belt, cropping out south of the Valley of Mexico and within the two states of Morelos and Mexico State. Porosities range from 1.4% to 56.7%; average porosity is 24.8%. Generally, permeabilities are low to median (0.2-933.3 mD) with an average permeability of 88.5 mD. The lavas are characterized by the highest porosity values followed by tuffs, conglomerates, sandstones and tuffaceous breccias. On the contrary, the highest permeabilities can be found in the conglomerates, followed by tuffs, tuffaceous breccias, sandstones and lavas. The knowledge of these petrophysical rock properties provides important information on the reservoir potential of volcanic settings to be integrated to 3D subsurface models.

  11. Potential of immunomodulatory agents as adjunct host-directed therapies for multidrug-resistant tuberculosis.

    PubMed

    Zumla, Alimuddin; Rao, Martin; Dodoo, Ernest; Maeurer, Markus

    2016-01-01

    Treatment of multidrug-resistant tuberculosis (MDR-TB) is extremely challenging due to the virulence of the etiologic strains of Mycobacterium tuberculosis (M. tb), the aberrant host immune responses and the diminishing treatment options with TB drugs. New treatment regimens incorporating therapeutics targeting both M. tb and host factors are urgently needed to improve the clinical management outcomes of MDR-TB. Host-directed therapies (HDT) could avert destructive tuberculous lung pathology, facilitate eradication of M. tb, improve survival and prevent long-term functional disability. In this review we (1) discuss the use of HDT for cancer and other infections, drawing parallels and the precedent they set for MDR-TB treatment, (2) highlight preclinical studies of pharmacological agents commonly used in clinical practice which have HDT potential, and (3) outline developments in cellular therapy to promote clinically beneficial immunomodulation to improve treatment outcomes in patients with pulmonary MDR-TB. The use of HDTs as adjuncts to MDR-TB therapy requires urgent evaluation. PMID:27301245

  12. Hydrogen, a potential safeguard for graft-versus-host disease and graft ischemia-reperfusion injury?

    PubMed Central

    Yuan, Lijuan; Shen, Jianliang

    2016-01-01

    Post-transplant complications such as graft-versus-host disease and graft ischemia-reperfusion injury are crucial challenges in transplantation. Hydrogen can act as a potential antioxidant, playing a preventive role against post-transplant complications in animal models of multiple organ transplantation. Herein, the authors review the current literature regarding the effects of hydrogen on graft ischemia-reperfusion injury and graft-versus-host disease. Existing data on the effects of hydrogen on ischemia-reperfusion injury related to organ transplantation are specifically reviewed and coupled with further suggestions for future work. The reviewed studies showed that hydrogen (inhaled or dissolved in saline) improved the outcomes of organ transplantation by decreasing oxidative stress and inflammation at both the transplanted organ and the systemic levels. In conclusion, a substantial body of experimental evidence suggests that hydrogen can significantly alleviate transplantation-related ischemia-reperfusion injury and have a therapeutic effect on graft-versus-host disease, mainly via inhibition of inflammatory cytokine secretion and reduction of oxidative stress through several underlying mechanisms. Further animal experiments and preliminary human clinical trials will lay the foundation for hydrogen use as a drug in the clinic.

  13. A Newly Emerged Cutaneous Leishmaniasis Focus in Northern Israel and Two New Reservoir Hosts of Leishmania major

    PubMed Central

    Faiman, Roy; Abbasi, Ibrahim; Jaffe, Charles; Motro, Yoav; Nasereddin, Abdelmagid; Schnur, Lionel F.; Torem, Moshe; Pratlong, Francine; Dedet, Jean-Pierre; Warburg, Alon

    2013-01-01

    In 2006/7, 18 cases of cutaneous leishmaniasis (CL) were reported for the first time from Sde Eliyahu (pop. 650), a village in the Beit She'an valley of Israel. Between 2007–2011, a further 88 CL cases were diagnosed bringing the total to 106 (16.3% of the population of Sde Eliyahu). The majority of cases resided in the south-western part of the village along the perimeter fence. The causative parasite was identified as Leishmania major Yakimoff & Schokhor, 1914 (Kinetoplastida: Trypanosomatidae). Phlebotomus papatasi (Scopoli), 1786 (Diptera: Psychodidae) was found to be the most abundant phlebotomine species comprising 97% of the sand flies trapped inside the village, and an average of 7.9% of the females were positive for Leishmania ITS1 DNA. Parasite isolates from CL cases and a sand fly were characterized using several methods and shown to be L. major. During a comprehensive survey of rodents 164 Levant voles Microtus guentheri Danford & Alston, 1880 (Rodentia: Cricetidae) were captured in alfalfa fields bordering the village. Of these 27 (16.5%) tested positive for Leishmania ITS1 DNA and shown to be L. major by reverse line blotting. A very high percentage (58.3% - 21/36) of Tristram's jirds Meriones tristrami Thomas, 1892 (Rodentia: Muridae), found further away from the village also tested positive for ITS1 by PCR. Isolates of L. major were successfully cultured from the ear of a wild jird found positive by ITS1 PCR. Although none of the wild PCR-positive voles exhibited external pathology, laboratory-reared voles that were infected by intradermal L. major inoculation, developed patent lesions and sand flies became infected by feeding on the ears of these laboratory-infected voles. This is the first report implicating M. guentheri and M. tristrami as reservoirs of Leishmania. The widespread co-distribution of M. guentheri and P. papatasi, suggests a significant threat from the spread of CL caused by L. major in the Middle East, central Asia and southern

  14. Potential accumulation of contaminated sediments in a reservoir of a high-Andean watershed: Morphodynamic connections with geochemical processes

    NASA Astrophysics Data System (ADS)

    Contreras, María. Teresa; Müllendorff, Daniel; Pastén, Pablo; Pizarro, Gonzalo E.; Paola, Chris; Escauriaza, Cristián.

    2015-05-01

    Rapid changes due to anthropic interventions in high-altitude environments, such as the Altiplano region in South America, require new approaches to understand the connections between physical and geochemical processes. Alterations of the water quality linked to the river morphology can affect the ecosystems and human development in the long term. The future construction of a reservoir in the Lluta River, located in northern Chile, will change the spatial distribution of arsenic-rich sediments, which can have significant effects on the lower parts of the watershed. In this investigation, we develop a coupled numerical model to predict and evaluate the interactions between morphodynamic changes in the Lluta reservoir, and conditions that can potentially desorb arsenic from the sediments. Assuming that contaminants are mobilized under anaerobic conditions, we calculate the oxygen concentration within the sediments to study the interactions of the delta progradation with the potential arsenic release. This work provides a framework for future studies aimed to analyze the complex connections between morphodynamics and water quality, when contaminant-rich sediments accumulate in a reservoir. The tool can also help to design effective risk management and remediation strategies in these extreme environments. This article was corrected on 15 JUNE 2015. See the end of the full text for details.

  15. Bile Acid Modifications at the Microbe-Host Interface: Potential for Nutraceutical and Pharmaceutical Interventions in Host Health.

    PubMed

    Joyce, Susan A; Gahan, Cormac G M

    2016-01-01

    Bile acids have emerged as important signaling molecules in the host, as they interact either locally or systemically with specific cellular receptors, in particular the farnesoid X receptor (FXR) and TGR5. These signaling functions influence systemic lipid and cholesterol metabolism, energy metabolism, immune homeostasis, and intestinal electrolyte balance. Through defined enzymatic activities, the gut microbiota can significantly modify the signaling properties of bile acids and therefore can have an impact upon host health. Alterations to the gut microbiota that influence bile acid metabolism are associated with metabolic disease, obesity, diarrhea, inflammatory bowel disease (IBD), Clostridium difficile infection, colorectal cancer, and hepatocellular carcinoma. Here, we examine the regulation of this gut-microbiota-liver axis in the context of bile acid metabolism and indicate how this pathway represents an important target for the development of new nutraceutical (diet and/or probiotics) and targeted pharmaceutical interventions. PMID:26772409

  16. Fossil micrometeorites from Finland — Basic features, scientific potential, and characteristics of the mesoproterozoic host rocks

    NASA Astrophysics Data System (ADS)

    Kettrup, Dirk; Deutsch, Alexander; Pihlaja, Pekka; Pesonen, Lauri J.

    The oldest known micrometeorites occur in the up to 1800 m thick Mesoproterozoic Satakunta sandstone in SW-Finland. This typical red bed formation covers a graben with the dimensions of about 15 × 100 km2. The Satakunta formation correlates with the Jotnian sandstone, overlaying at several locations in Fennoscandia basement rocks, which are part of the about 1.8 to 1.9 Ga old Svecofennian orogenic belt. The age of the Satakunta formation s.s. is not well constrained: Sedimentation may have already begun 1.65 Ga ago, and ended prior to the intrusion of the post-Jotnian diabases (1.26 Ga). The depositional environment of the Satakunta sediments was primarily mostly fluvial. In arkose sandstones of this formation, over 60 cosmic spherules (melted micrometeorites) have been identified. They belong to different mineralogical types, and display unaltered mineralogical and chemical features, including the presence of a still glassy matrix. Moreover, this cosmic dust lacks clear signs of mechanical transport. So far, the reasons for the excellent preservation of the micrometeorites are enigmatic. Conceivable factors that generally may have influenced the relatively high abundance of the micrometeorites in the Satakunta formation are (i) distinct concentrations mechanisms acting prior to the embedding into the host sediment, (ii) settling of the spherules at low energy, and lack of further transport in the sedimentological environment, (iii) only minor diagenetic compaction of the host sediments at rather reducing conditions, and (iv) a quite specific time-integrated temperature history for over a billion years. In this contribution, we outline sedimentological characteristics of both, barren, and spherule-carrying Satakunta lithologies. In addition, we discuss possible scenarios for deposition, and survival of this ancient cosmic dust. Understanding of these processes is of prime importance as red beds are quite common lithologies in the Earth's history, and hence, may

  17. Potential Animal Reservoirs of Toscana Virus and Coinfections with Leishmania infantum in Turkey

    PubMed Central

    Dincer, Ender; Gargari, Sepandar; Ozkul, Aykut; Ergunay, Koray

    2015-01-01

    Toscana virus (TOSV), a sandfly-borne phlebovirus, is an important agent of human meningoencephalitis in the Mediterranean region, for which vertebrates acting as reservoirs have not yet been determined. This study investigates TOSV and Leishmania infections in dogs, cats, sheep, and goats from Adana and Mersin provinces in southeastern Turkey. TOSV neutralizing antibodies were demonstrated in 40.4% of the dog and 4% of the goat samples. TOSV RNA was detected in 9.9% of the 252 samples that mainly comprise dogs (96%). Thus, canine species can be suggested as the candidate reservoirs of TOSV. Partial sequences revealed the activity of TOSV genotypes A and B. In two dogs presenting with symptoms of canine leishmaniasis, infections of TOSV genotype B and Leishmania infantum have been documented, describing the first report of coinfections with these agents. PMID:25711610

  18. Combining genomic sequencing methods to explore viral diversity and reveal potential virus-host interactions.

    PubMed

    Chow, Cheryl-Emiliane T; Winget, Danielle M; White, Richard A; Hallam, Steven J; Suttle, Curtis A

    2015-01-01

    Viral diversity and virus-host interactions in oxygen-starved regions of the ocean, also known as oxygen minimum zones (OMZs), remain relatively unexplored. Microbial community metabolism in OMZs alters nutrient and energy flow through marine food webs, resulting in biological nitrogen loss and greenhouse gas production. Thus, viruses infecting OMZ microbes have the potential to modulate community metabolism with resulting feedback on ecosystem function. Here, we describe viral communities inhabiting oxic surface (10 m) and oxygen-starved basin (200 m) waters of Saanich Inlet, a seasonally anoxic fjord on the coast of Vancouver Island, British Columbia using viral metagenomics and complete viral fosmid sequencing on samples collected between April 2007 and April 2010. Of 6459 open reading frames (ORFs) predicted across all 34 viral fosmids, 77.6% (n = 5010) had no homology to reference viral genomes. These fosmids recruited a higher proportion of viral metagenomic sequences from Saanich Inlet than from nearby northeastern subarctic Pacific Ocean (Line P) waters, indicating differences in the viral communities between coastal and open ocean locations. While functional annotations of fosmid ORFs were limited, recruitment to NCBI's non-redundant "nr" database and publicly available single-cell genomes identified putative viruses infecting marine thaumarchaeal and SUP05 proteobacteria to provide potential host linkages with relevance to coupled biogeochemical cycling processes in OMZ waters. Taken together, these results highlight the power of coupled analyses of multiple sequence data types, such as viral metagenomic and fosmid sequence data with prokaryotic single cell genomes, to chart viral diversity, elucidate genomic and ecological contexts for previously unclassifiable viral sequences, and identify novel host interactions in natural and engineered ecosystems. PMID:25914678

  19. Combining genomic sequencing methods to explore viral diversity and reveal potential virus-host interactions

    PubMed Central

    Chow, Cheryl-Emiliane T.; Winget, Danielle M.; White, Richard A.; Hallam, Steven J.; Suttle, Curtis A.

    2015-01-01

    Viral diversity and virus-host interactions in oxygen-starved regions of the ocean, also known as oxygen minimum zones (OMZs), remain relatively unexplored. Microbial community metabolism in OMZs alters nutrient and energy flow through marine food webs, resulting in biological nitrogen loss and greenhouse gas production. Thus, viruses infecting OMZ microbes have the potential to modulate community metabolism with resulting feedback on ecosystem function. Here, we describe viral communities inhabiting oxic surface (10 m) and oxygen-starved basin (200 m) waters of Saanich Inlet, a seasonally anoxic fjord on the coast of Vancouver Island, British Columbia using viral metagenomics and complete viral fosmid sequencing on samples collected between April 2007 and April 2010. Of 6459 open reading frames (ORFs) predicted across all 34 viral fosmids, 77.6% (n = 5010) had no homology to reference viral genomes. These fosmids recruited a higher proportion of viral metagenomic sequences from Saanich Inlet than from nearby northeastern subarctic Pacific Ocean (Line P) waters, indicating differences in the viral communities between coastal and open ocean locations. While functional annotations of fosmid ORFs were limited, recruitment to NCBI's non-redundant “nr” database and publicly available single-cell genomes identified putative viruses infecting marine thaumarchaeal and SUP05 proteobacteria to provide potential host linkages with relevance to coupled biogeochemical cycling processes in OMZ waters. Taken together, these results highlight the power of coupled analyses of multiple sequence data types, such as viral metagenomic and fosmid sequence data with prokaryotic single cell genomes, to chart viral diversity, elucidate genomic and ecological contexts for previously unclassifiable viral sequences, and identify novel host interactions in natural and engineered ecosystems. PMID:25914678

  20. Host Suitability of Potential Cover Crops for Root-knot Nematodes.

    PubMed

    McSorley, R

    1999-12-01

    Several potential cover crops were evaluated for their susceptibility to Meloidogyne arenaria race 1, M. incognita race 1, and M. javanica in a series of five greenhouse experiments. No galls or egg masses were observed on roots of castor (Ricinus communis), cowpea (Vigna unguiculata cv. Iron Clay), crotalaria (Crotalaria spectabilis), or American jointvetch (Aeschynomene americana). Occasional egg masses (rating hosts or non-hosts of the nematode isolates, including several legumes (cowpea, crotalaria, jointvetch, sunn hemp) that have potential use in both nematode and nitrogen management. PMID:19270926

  1. Host Suitability of Potential Cover Crops for Root-knot Nematodes

    PubMed Central

    McSorley, R.

    1999-01-01

    Several potential cover crops were evaluated for their susceptibility to Meloidogyne arenaria race 1, M. incognita race 1, and M. javanica in a series of five greenhouse experiments. No galls or egg masses were observed on roots of castor (Ricinus communis), cowpea (Vigna unguiculata cv. Iron Clay), crotalaria (Crotalaria spectabilis), or American jointvetch (Aeschynomene americana). Occasional egg masses (rating ≤1.0 on 0-5 scale) were observed on marigold (Tagetes minuta) in one test with M. incognita, on sesame (Sesamum indicum cv. Paloma) in a test with M. arenaria, and on sunn hemp (Crotalaria juncea cv. Tropic Sun) in 1 of 2 tests with M. incognita; otherwise, these crops were free of egg masses. Numbers of second-stage juveniles (J2) hatched from eggs per root system were low (≤10/pot) for the abovementioned crops. Egg-mass levels and numbers of hatched J2 of M. incognita on pearl millet (Pennisetum typhoides, Tifleaf II hybrid) were comparable to those on a susceptible tomato (Lycopersicon esculentum cv. Rutgers). In a test with M. arenaria, egg mass levels and numbers of J2 on Japanese millet (Echinochloa frumentacea) were similar to those on tomato. Japanese millet was susceptible to each of the nematode isolates tested. However, several of the crops evaluated were very poor hosts or non-hosts of the nematode isolates, including several legumes (cowpea, crotalaria, jointvetch, sunn hemp) that have potential use in both nematode and nitrogen management. PMID:19270926

  2. Toxoplasma gondii ROP18: potential to manipulate host cell mitochondrial apoptosis.

    PubMed

    Wu, Liang; Wang, Xiao; Li, Yunhui; Liu, Yuan; Su, Danhua; Fu, Tao; Guo, Fei; Gu, Liangping; Jiang, Xugan; Chen, Shengxia; Cao, Jianping

    2016-06-01

    Toxoplasma gondii is an obligate intracellular parasite that may manipulate host cell mitochondrial apoptosis pathways. In our experiment, 293T cells were transfected with the p3×FLAG-CMV-Myc-ROP18 vector and expressed the ROP18-Myc fusion protein. Cell apoptosis was induced by 0.5 μg/mL actinomycin D (ActD) and was detected by Annexin V-FITC/PI assay. The cell mitochondrial membrane potential was determined by JC-1. Cytochrome c (Cyto-c) from mitochondria and the cytoplasm was measured by Western blot. The Bcl-2 and Bax coding gene expression levels were detected by real-time PCR. We found, in vitro, that T. gondii ROP18 significantly suppressed 293T cell apoptosis induced by ActD and maintained mitochondrial membrane potential and integrity, thereby preventing the release of Cyto-c from mitochondria into the cytoplasm. The ratio of Bcl-2/Bax in ROP18-overexpressing cells was significantly higher than that of the negative control. Therefore, we speculate that ROP18 could suppress host cell apoptosis via the mitochondrial apoptosis pathway in vitro. PMID:27021182

  3. Potential Impacts of Leakage from Black Rock Reservoir on the Hanford Site Unconfined Aquifer: Initial Hypothetical Simulations of Flow and Contaminant Transport - Errata

    SciTech Connect

    Freedman, Vicky L.

    2007-04-30

    Errata for report documenting initial scoping calculations investigating the potential impacts on the Hanford unconfined aquifer resulting from leakage from the proposed Black Rock Reservoir to the west. These calculations were performed for the U.S. Bureau of Reclamation.

  4. Dingoes (Canis dingo Meyer, 1793) continue to be an important reservoir host of Dirofilaria immitis in low density housing areas in Australia.

    PubMed

    Smout, Felicity A; Skerratt, Lee F; Butler, James R A; Johnson, Christopher N; Congdon, Bradley C

    2016-01-15

    Heartworm (Dirofilaria immitis) is a parasitic nematode responsible for canine and feline cardiopulmonary dirofilariasis and human zoonotic filariosis in both tropical and temperate regions throughout the world. Importantly, this study in the Wet Tropics of Far North Queensland found D. immitis remains at high prevalence (72.7%) in wild dingoes in low density housing areas in Australia. This prevalence is equivalent to the highest levels seen in wild dogs in Australia and represents an ongoing risk to domestic dogs, cats and humans. In contrast, in higher density residential areas prevalence was significantly lower (16.7%, p=0.001). It is possible that chemotherapeutic heartworm (HW) prevention in domestic dogs in these higher density housing areas is helping to control infection in the resident dingo population. Five dingoes killed in council control operations around Atherton, a non-endemic HW region in the Wet Tropics, were all negative for HW likely due to the colder climate of the region restricting transmission of the disease. This survey highlights the importance of dingoes as reservoir hosts of HW disease and that the subsequent risk of infection to companion animals and humans depends on local factors such as housing density, possibly linked to chemotherapeutic HW control in domestic dogs and climate. Our findings show that veterinary clinicians need to ensure that pet owners are aware of HW disease and do not become complacent about HW chemoprohylaxis in areas which support dingo populations. PMID:26790730

  5. Stratigraphy and reservoir potential of glacial deposits of the Itarare Group (Carboniferous-Permian), Parana basin, Brazil

    SciTech Connect

    Franca, A.B. ); Potter, P.E. )

    1991-01-01

    Drilling in the Parana basin of Brazil in the mid-1980s discovered gas and condensate in the Itarare Group, and showed that glacial deposits in Brazil can contain hydrocarbons. The reservoir potential of the Carboniferous-Permian Itarare Group of the basin is analyzed using new subsurface data from 20 deep wells drilled in the early to middle 1980s. Central to the analysis was the construction of over 3000 km of cross sections based on more than 100 wells, the description of more than 400 m of core, and study of 95 thin sections. Subsurface exploration and mapping of the Itarare are greatly aided by the recognition of three recently defined and described formations and four members, which are traceable for hundreds of kilometers. These units belong to three major glacial cycles in which the pebbly mudstones and shales are seals and glacially related sandstones are reservoirs. The best sandstone reservoirs in the deep subsurface belong to the Rio Segredo Member, the upper-most sandy unit of the Itarare. The Rio Segredo Member is the best petroleum target because it is overlain by thick seals and massive pebbly mudstones and shales, and because it is shallower and less compacted than underlying, more deeply buried sandstones. This member has little detrital matrix and much of its porosity is secondary, developed by carboxylic acid and CO{sub 2} generated when Jurassic-Cretaceous basalts, sills, and dikes were intruded into the Parana basin as Gondwana broke up.

  6. Planktothrix Rubescens in Freshwater Reservoirs: The Sentinel-2 Potentiality for Mapping Phycocyanin Concentration

    NASA Astrophysics Data System (ADS)

    Maltese, Antonino; Capodici, Fulvio; Ciraolo, Giuseppe; Corbari, Chiara; Granata, Antonino; La Loggia, Goffredo

    2012-04-01

    In December 2006 blooms of Planktothrix rubescens were found in the Prizzi reservoir in Sicily. P. rubescens is sadly famous for producing microcystins (MC), which are harmful hepatotoxins. Recently (2006) P. rubescens has been found in the Pozzillo, Nicoletti, Ancipa, Prizzi and Garcia reservoirs. This paper compares the optical properties of the water of an infested reservoir and those of a clear water reservoir. Furthermore it evaluates an empirical method based on bands product to evaluate the phycocyanin cell density from MODIS, Landsat ETM+ and Sentinel-2 images. Spectroradiometric field campaigns were carried out in February/March 2008 to quantify the spectral transparencies of two water bodies through the calculation of the diffuse attenuation coefficient, by measuring underwater downwelling irradiance at different depths as well as water spectral reflectance. The possibility of detecting P. rubescens using its spectral characteristics through diachronic remote sensing techniques was investigated. During periods of low shortwave irradiance such as winter, when light weakly penetrates water columns and the water cools, P. rubescens filaments float up to the surface, forming red-colored blooms. Analyses were carried out on two reservoirs: Lake Prizzi and Lake Trinità, with and without the P. rubescens algal bloom respectively, during the acquisition of field data. Water samples were collected for both phytoplankton counting and biovolume estimation and for the analysis of MC. Meteorological measurements highlighted the low temperatures (< 2° C) for this region, which occurred between two frosts in December 2007 and February 2008, with a contemporaneous reduction in the incident total solar radiation that probably triggered P. rubescens to float up to the water surface in the infested lake. Underwater spectral irradiances and in-air upwelling spectral radiances were acquired in February/March 2007 in order to characterize the extinction optical properties of

  7. Fundamental Host Range of Leptoypha hospita (Hemiptera: Tingidae), a Potential Biological Control Agent of Chinese Privet.

    PubMed

    Zhang, Yanzhuo; Hanula, James L; Horn, Scott; Jones, Cera; Kristine Braman, S; Sun, Jianghua

    2016-08-01

    Chinese privet, Ligustrum sinense Lour., is an invasive shrub within riparian areas of the southeastern United States. Biological control is considered the most suitable management option for Chinese privet. The potential host range of the lace bug, Leptoypha hospita Drake et Poor, was evaluated on the basis of adult feeding and oviposition, combined oviposition-nymphal development no-choice tests, nymphal development no-choice tests, multiple generation comparison on Forestiera pubescens Nutt. and L. sinense no-choice tests, and multiple-choice tests with 45 plant species in 13 families. No-choice tests showed that the host range of L. hospita was restricted to the tribe Oleeae. In adult feeding and oviposition no-choice tests, the bug fed and oviposited significantly more on Chinese privet than all other test plant species except for three native Forestiera spp., two nonnative Syringa spp., and another exotic Ligustrum sp. Among those, only F. pubescens supported complete development in numbers comparable to Chinese privet. However, when reared for multiple generations lace bugs reared on F. pubescens were smaller and had lower fecundity than those reared on L. sinense, suggesting F. pubescens is not an optimal host. In multiple-choice tests, L. hospita displayed a strong preference for feeding and ovipositing on Chinese privet over other test plant species, with the exception of the closely related nonnative Syringa spp. and its congenic species Ligustrum vulgare. The results of this study suggest that the risk to nontarget plant species in North America is minimal, and L. hospita would be a promising candidate for Chinese privet biological control. PMID:27325627

  8. Domestic pigs as potential reservoirs of human and animal trypanosomiasis in Northern Tanzania

    PubMed Central

    2013-01-01

    Background Pig keeping is becoming increasingly common across sub-Saharan Africa. Domestic pigs from the Arusha region of northern Tanzania were screened for trypanosomes using PCR-based methods to examine the role of pigs as a reservoir of human and animal trypanosomiasis. Methods A total of 168 blood samples were obtained from domestic pigs opportunistically sampled across four districts in Tanzania (Babati, Mbulu, Arumeru and Dodoma) during December 2004. A suite of PCR-based methods was used to identify the species and sub-species of trypanosomes including: Internally Transcribed Sequence to identify multiple species; species specific PCR to identify T. brucei s. l. and T. godfreyi and a multiplex PCR reaction to distinguish T. b. rhodesiense from T. brucei s. l. Results Of the 168 domestic pigs screened for animal and human infective trypanosome DNA, 28 (16.7%) were infected with one or more species of trypanosome; these included: six pigs infected with Trypanosoma vivax (3.6%); three with Trypanosoma simiae (1.8%); two with Trypanosoma congolense (Forest) (1%) and four with Trypanosoma godfreyi (2.4%). Nineteen pigs were infected with Trypanosoma brucei s. l. (10.1%) of which eight were identified as carrying the human infective sub-species Trypanosoma brucei rhodesiense (4.8%). Conclusion These results show that in Tanzania domestic pigs may act as a significant reservoir for animal trypanosomiasis including the cattle pathogens T. vivax and T. congolense, the pig pathogen T. simiae, and provide a significant reservoir for T. b. rhodesiense, the causative agent of acute Rhodesian sleeping sickness. PMID:24499540

  9. Lactococcus lactis M4, a potential host for the expression of heterologous proteins

    PubMed Central

    2011-01-01

    Background Many plasmid-harbouring strains of Lactococcus lactis have been isolated from milk and other sources. Plasmids of Lactococcus have been shown to harbour antibiotic resistance genes and those that express some important proteins. The generally regarded as safe (GRAS) status of L. lactis also makes it an attractive host for the production of proteins that are beneficial in numerous applications such as the production of biopharmaceutical and nutraceutical. In the present work, strains of L. lactis were isolated from cow's milk, plasmids were isolated and characterised and one of the strains was identified as a potential new lactococcal host for the expression of heterologous proteins. Results Several bacterial strains were isolated from cow's milk and eight of those were identified as Lactococcus lactis by 16S rRNA sequence analysis. Antibiotic susceptibility tests that were carried out showed that 50% of the isolates had almost identical antibiotic resistance patterns compared to the control strains MG1363 and ATCC 11454. Plasmid profiling results indicated the lack of low molecular weight plasmids for strain M4. Competent L. lactis M4 and MG1363 were prepared and electrotransformed with several lactococcal plasmids such as pMG36e, pAR1411, pAJ01 and pMG36e-GFP. Plasmid isolation and RE analyses showed the presence of these plasmids in both M4 and the control strain after several generations, indicating the ability of M4 to maintain heterologous plasmids. SDS-PAGE and Western blot analyses also confirmed the presence of GFP, demonstrating the potential of heterologous protein expression in M4. Conclusions Based on the 16S rRNA gene molecular analysis, eight Gram-positive cocci milk isolates were identified as L. lactis subsp. lactis. One of the strains, L. lactis M4 was able to maintain transformed low molecular weight plasmid vectors and expressed the GFP gene. This strain has the potential to be developed into a new lactococcal host for the expression

  10. Silurian "Clinton" Sandstone Reservoir Characterization for Evaluation of CO2-EOR Potential in the East Canton Oil Field, Ohio

    SciTech Connect

    Riley, Ronald; Wicks, John; Perry, Christopher

    2009-12-30

    The purpose of this study was to evaluate the efficacy of using CO2-enhanced oil recovery (EOR) in the East Canton oil field (ECOF). Discovered in 1947, the ECOF in northeastern Ohio has produced approximately 95 million barrels (MMbbl) of oil from the Silurian “Clinton” sandstone. The original oil-in-place (OOIP) for this field was approximately 1.5 billion bbl and this study estimates by modeling known reservoir parameters, that between 76 and 279 MMbbl of additional oil could be produced through secondary recovery in this field, depending on the fluid and formation response to CO2 injection. A CO2 cyclic test (“Huff-n-Puff”) was conducted on a well in Stark County to test the injectivity in a “Clinton”-producing oil well in the ECOF and estimate the dispersion or potential breakthrough of the CO2 to surrounding wells. Eighty-one tons of CO2 (1.39 MMCF) were injected over a 20-hour period, after which the well was shut in for a 32-day “soak” period before production was resumed. Results demonstrated injection rates of 1.67 MMCF of gas per day, which was much higher than anticipated and no CO2 was detected in gas samples taken from eight immediately offsetting observation wells. All data collected during this test was analyzed, interpreted, and incorporated into the reservoir characterization study and used to develop the geologic model. The geologic model was used as input into a reservoir simulation performed by Fekete Associates, Inc., to estimate the behavior of reservoir fluids when large quantities of CO2 are injected into the “Clinton” sandstone. Results strongly suggest that the majority of the injected CO2 entered the matrix porosity of the reservoir pay zones, where it diffused into the oil. Evidence includes: (A) the volume of injected CO2 greatly exceeded the estimated capacity of the hydraulic fracture and natural fractures; (B) there was a gradual injection and pressure rate build-up during the test; (C) there was a subsequent

  11. Silurian "Clinton" Sandstone Reservoir Characterization for Evaluation of CO2-EOR Potential in the East Canton Oil Field, Ohio

    SciTech Connect

    Ronald Riley; John Wicks; Christopher Perry

    2009-12-30

    The purpose of this study was to evaluate the efficacy of using CO2-enhanced oil recovery (EOR) in the East Canton oil field (ECOF). Discovered in 1947, the ECOF in northeastern Ohio has produced approximately 95 million barrels (MMbbl) of oil from the Silurian 'Clinton' sandstone. The original oil-in-place (OOIP) for this field was approximately 1.5 billion bbl and this study estimates by modeling known reservoir parameters, that between 76 and 279 MMbbl of additional oil could be produced through secondary recovery in this field, depending on the fluid and formation response to CO2 injection. A CO2 cyclic test ('Huff-n-Puff') was conducted on a well in Stark County to test the injectivity in a 'Clinton'-producing oil well in the ECOF and estimate the dispersion or potential breakthrough of the CO2 to surrounding wells. Eighty-one tons of CO2 (1.39 MMCF) were injected over a 20-hour period, after which the well was shut in for a 32-day 'soak' period before production was resumed. Results demonstrated injection rates of 1.67 MMCF of gas per day, which was much higher than anticipated and no CO2 was detected in gas samples taken from eight immediately offsetting observation wells. All data collected during this test was analyzed, interpreted, and incorporated into the reservoir characterization study and used to develop the geologic model. The geologic model was used as input into a reservoir simulation performed by Fekete Associates, Inc., to estimate the behavior of reservoir fluids when large quantities of CO2 are injected into the 'Clinton' sandstone. Results strongly suggest that the majority of the injected CO2 entered the matrix porosity of the reservoir pay zones, where it diffused into the oil. Evidence includes: (A) the volume of injected CO2 greatly exceeded the estimated capacity of the hydraulic fracture and natural fractures; (B) there was a gradual injection and pressure rate build-up during the test; (C) there was a subsequent, gradual flashout of

  12. Effect of salt tectonics on potential CO2 reservoir and caprock in the Norwegian-Danish basin.

    NASA Astrophysics Data System (ADS)

    Sassier, C.; Faleide, J. I.; Aagaard, P.; Gabrielsen, R. H.

    2012-04-01

    Salt tectonics can provide closure structure for accumulation of oil or gas. Thus, it can also provide proper closure structures for CO2 storage. In contrast to oil and gas accumulation where the sealing is evident, however, these potential closure structures, including reservoir and caprock, and the associated faults have to be carefully evaluated for CO2 storage. In the North Sea, previous screening for CO2 storage plays identified potential Triassic and Jurassic reservoirs, in particular in the Upper Triassic Gassum Formation. In the Norwegian-Danish basin located in the southern part of the North Sea, Permian salt occurs widely and is at the origin of intense salt tectonics. There, salt plugs and walls deformed and pierced the overburden sediments between Triassic or Jurassic times until the Early Miocene according to previous studies. In order to evaluate the potential closure structures over salt plugs in the Norwegian-Danish basin for CO2 storage purpose, we investigate the initiation, movement and duration of the salt tectonics, its effects on the Gassum formation and its overburden caprock through detailed seismic mapping and structural analysis. In this contribution, we will present the preliminary results of this study.

  13. Current and Potential Applications of Host-Defense Peptides and Proteins in Urology

    PubMed Central

    2015-01-01

    The use of antibiotics has become increasingly disfavored as more multidrug resistant pathogens are on the rise. A promising alternative to the use of these conventional drugs includes antimicrobial peptides or host-defense peptides. These peptides typically consist of short amino acid chains with a net cationic charge and a substantial portion of hydrophobic residues. They mainly target the bacterial cell membrane but are also capable of translocating through the membrane and target intracellular components, making it difficult for bacteria to gain resistance as multiple essential cellular processes are being targeted. The use of these peptides in the field of biomedical therapies has been examined, and the different approaches to using them under various settings are constantly being discovered. In this review, we discuss the current and potential applications of these host-defense peptides in the field of urology. Besides the use of these peptides as antimicrobial agents, the value of these biological molecules has recently been expanded to their use as antitumor and anti-kidney-stone agents. PMID:25815308

  14. Bacterial porin disrupts mitochondrial membrane potential and sensitizes host cells to apoptosis.

    PubMed

    Kozjak-Pavlovic, Vera; Dian-Lothrop, Elke A; Meinecke, Michael; Kepp, Oliver; Ross, Katharina; Rajalingam, Krishnaraj; Harsman, Anke; Hauf, Eva; Brinkmann, Volker; Günther, Dirk; Herrmann, Ines; Hurwitz, Robert; Rassow, Joachim; Wagner, Richard; Rudel, Thomas

    2009-10-01

    The bacterial PorB porin, an ATP-binding beta-barrel protein of pathogenic Neisseria gonorrhoeae, triggers host cell apoptosis by an unknown mechanism. PorB is targeted to and imported by host cell mitochondria, causing the breakdown of the mitochondrial membrane potential (DeltaPsi(m)). Here, we show that PorB induces the condensation of the mitochondrial matrix and the loss of cristae structures, sensitizing cells to the induction of apoptosis via signaling pathways activated by BH3-only proteins. PorB is imported into mitochondria through the general translocase TOM but, unexpectedly, is not recognized by the SAM sorting machinery, usually required for the assembly of beta-barrel proteins in the mitochondrial outer membrane. PorB integrates into the mitochondrial inner membrane, leading to the breakdown of DeltaPsi(m). The PorB channel is regulated by nucleotides and an isogenic PorB mutant defective in ATP-binding failed to induce DeltaPsi(m) loss and apoptosis, demonstrating that dissipation of DeltaPsi(m) is a requirement for cell death caused by neisserial infection. PMID:19851451

  15. Experimental oral inoculations in birds to evaluate potential definitive hosts of Neospora caninum.

    PubMed

    Baker, D G; Morishita, T Y; Brooks, D L; Shen, S K; Lindsay, D S; Dubey, J P

    1995-10-01

    Experimental oral inoculations to evaluate potential definitive hosts of Neospora caninum were conducted by feeding infected rodent tissues to 9 carnivorous birds of 4 species. Birds included 2 red-tailed hawks (Buteo jamaicensis), 2 turkey vultures (Cathartes aura), 2 barn owls (Tyto alba), and 3 American crows (Corvus brachyrhynchus). The rodents (mice or rats) had been inoculated with 100,000 culture-derived tachyzoites of N. caninum 1-6 mo before feeding to the birds. Fecal samples were collected from each bird daily for 1 mo after feeding rodents and examined for oocysts by fecal flotation. In addition, processed aliquots from all avian fecal samples were fed to BALB/c mice. Five weeks after feeding, mice were bled and sera were tested for antibodies against N. caninum. One to two months later, mice were killed and brain tissue was examined microscopically for protozoal cysts. While occasional oocysts were found in avian fecal samples, these were likely not N. caninum because they were not infective to BALB/c mice. It was concluded that the bird species tested are not likely to be definitive hosts of N. caninum. PMID:7472875

  16. Observations on bilharziasis and the potential snail hosts in the Republic of the Congo (Brazzaville)

    PubMed Central

    McCullough, Fergus S.

    1964-01-01

    In 1962, the author conducted a preliminary investigation of bilharziasis in the Republic of the Congo (Brazzaville), at the request of the Government, in order to review existing information and work done on bilharziasis, to assess the prevalence and distribution of the disease, to make observations on the potential snail hosts, and to propose further suitable studies and control measures. Although little time was available for this study, it appears reasonable to conclude that Schistosoma haematobium is confined to a few foci in the west of the country, the main snail host being a new subspecies of Bulinus (B.) truncatus. Intestinal bilharziasis is apparently very rare, but systematic stool surveys have not been done; S. mansoni may be, or become, endemic at Dolisie, where Biomphalaria camerunensis is abundant. The main factors governing the restricted distribution of bilharziasis are discussed. Bilharziasis control appears to merit relatively low priority compared with that due to several other diseases, and the author concludes that bilharziasis is unlikely to become widespread in future years unless there is major environmental change, although the intensity of transmission may increase in some present endemic foci. PMID:14163961

  17. In-situ stress and fracture permeability in a fault-hosted geothermal reservoir at Dixie Valley, Nevada

    USGS Publications Warehouse

    Hickman, Stephen; Barton, Colleen; Zoback, Mark; Morin, Roger; Sass, John; Benoit, Richard

    1997-01-01

    As part of a study relating fractured rock hydrology to in-situ stress and recent deformation within the Dixie Valley Geothermal Field, borehole televiewer logging and hydraulic fracturing stress measurements were conducted in a 2.7-km-deep geothermal production well (73B-7) drilled into the Stillwater fault zone. Borehole televiewer logs from well 73B-7 show numerous drilling-induced tensile fractures, indicating that the direction of the minimum horizontal principal stress, Shmin, is S57 ??E. As the Stillwater fault at this location dips S50 ??E at approximately 3??, it is nearly at the optimal orientation for normal faulting in the current stress field. Analysis of the hydraulic fracturing data shows that the magnitude of Shmin is 24.1 and 25.9 MPa at 1.7 and 2.5 km, respectively. In addition, analysis of a hydraulic fracturing test from a shallow well 1.5 km northeast of 73B-7 indicates that the magnitude of Shmin is 5.6 MPa at 0.4 km depth. Coulomb failure analysis shows that the magnitude of Shmin in these wells is close to that predicted for incipient normal faulting on the Stillwater and subparallel faults, using coefficients of friction of 0.6-1.0 and estimates of the in-situ fluid pressure and overburden stress. Spinner flowmeter and temperature logs were also acquired in well 73B-7 and were used to identify hydraulically conductive fractures. Comparison of these stress and hydrologic data with fracture orientations from the televiewer log indicates that hydraulically conductive fractures within and adjacent to the Stillwater fault zone are critically stressed, potentially active normal faults in the current west-northwest extensional stress regime at Dixie Valley.

  18. Interpolation of bottom bathymetry and potential erosion in a large Tennessee reservoir system using GRASS

    SciTech Connect

    Hargrove, W.W.; Hoffman, F.M.; Levine, D.A.

    1995-12-31

    A regularized spline with tension was used to interpolate a bathymetric bottom surface for the Watts Bar reservoir just south of Oak Ridge, TN as part of an effort to predict the spatial distribution of radionuclide contaminants. Cesium 137 was released as a by-product of the production of fissionable materials during the mid-1950s. Cesium is strongly adsorbed onto clay and silt particles in the water column, and tends to settle to the bottom. An understanding of the shape and contours of the bottom is important for understanding and prediction of the location and extent of contaminated sediments. The results of the investigations are available on the World Wide Web (WWW) at URL: http://www.esd.ornl.gov/programs/CRERP/INDEX.HTM. The Waterways Experiment Station (WES) of the US Army Corps of Engineers conducted a hydro-acoustic study of the Clinch River arm of Watts Bar Reservoir to determine the distribution, thickness, and type of bottom sediments that had accumulated since completion of Watts Bar Dam in 1942. WES has developed a rapid geophysical technique to determine material characteristics of bottom and subbottom sediments. Acoustic impedance values determined from seismic reflection data are directly related to the density and material type of the subbottom sediments. The objective was to quantify with depth the density and type of bottom and subbottom sediments up to depths of 15 ft below the bottom surface along the Clinch River and Poplar Creek, TN.

  19. Facies, faults and potential sweet spots in a tight gas reservoir: Almond Formation, Wyoming

    SciTech Connect

    Martinsen, R.; Iverson, W.; Surdam, R.

    1996-12-31

    The Almond Formation is a major producer of gas in southwestern Wyoming. Although exploration generally is aimed at finding conventional reservoirs in upper Almond marine sandstones, the majority of Almond gas is contained in the underlying main Almond, a succession of dominantly non-marine, interbedded tight sandstones, siltstones, carbonaceous shales and coals. Production data indicate that some of the best gas wells completed in upper Almond sands show little production decline and have already produced more gas than calculations indicate they contain. This implies that these wells have somehow successfully tapped into the vast supply of gas contained in the main Almond. We believe that the more permeable reservoirs, in addition to providing {open_quotes}sweet spots{close_quotes} for exploration, also serve as lateral conduits capable of draining gas over a broad area from the main Almond. The {open_quotes}sweet spots{close_quotes} themselves do not need to be volumetrically large, only permeable and laterally continuous. Previously unrecognized marine sands, similar to those in the upper Almond, are favorably located in the middle of the main Almond succession and may provide additional lateral conduits. Studies also show that syndepositional faults significantly influenced deposition and may also be important in terms of fluid flow. At least some syndepositional faults are associated with anomalously high gas and/or water production within fields, and may be vertical conduits for fluid flow.

  20. Facies, faults and potential sweet spots in a tight gas reservoir: Almond Formation, Wyoming

    SciTech Connect

    Martinsen, R.; Iverson, W.; Surdam, R. )

    1996-01-01

    The Almond Formation is a major producer of gas in southwestern Wyoming. Although exploration generally is aimed at finding conventional reservoirs in upper Almond marine sandstones, the majority of Almond gas is contained in the underlying main Almond, a succession of dominantly non-marine, interbedded tight sandstones, siltstones, carbonaceous shales and coals. Production data indicate that some of the best gas wells completed in upper Almond sands show little production decline and have already produced more gas than calculations indicate they contain. This implies that these wells have somehow successfully tapped into the vast supply of gas contained in the main Almond. We believe that the more permeable reservoirs, in addition to providing [open quotes]sweet spots[close quotes] for exploration, also serve as lateral conduits capable of draining gas over a broad area from the main Almond. The [open quotes]sweet spots[close quotes] themselves do not need to be volumetrically large, only permeable and laterally continuous. Previously unrecognized marine sands, similar to those in the upper Almond, are favorably located in the middle of the main Almond succession and may provide additional lateral conduits. Studies also show that syndepositional faults significantly influenced deposition and may also be important in terms of fluid flow. At least some syndepositional faults are associated with anomalously high gas and/or water production within fields, and may be vertical conduits for fluid flow.

  1. Analysis of pulsed field gel electrophoresis profiles using multiple enzymes for predicting potential source reservoirs for strains of Salmonella Enteritidis and Salmonella Typhimurium isolated from humans.

    PubMed

    Son, Insook; Zheng, Jie; Keys, Christine E; Zhao, Shaohua; Meng, Jianghong; Brown, Eric W

    2013-06-01

    We reported previously on a highly discriminatory pulsed field gel electrophoresis-based (PFGE) subtyping scheme for Salmonella enterica serovar Enteritidis (SE) and Salmonella Typhimurium (ST) that relies on combined cluster analysis of up to six restriction enzymes. This approach allowed for the high-resolution separation of numerous poultry-derived SE and ST isolates into several distinct clusters that sorted along several geographical and host-linked boundaries. In this study, 101 SE and 151 ST strains isolated from poultry, swine, beef, mouse, and produce origins were combined with 62 human SE and ST isolates of unknown sources. PFGE profiles were generated across six restriction enzymes (XbaI, BlnI, SpeI, SfiI, PacI, and NotI) for human SE and ST isolates. The combined six-enzyme UPGMA trees of SE and ST revealed six separate origins of North American human SE isolates including one association with a "cosmopolitan" cluster of SEs from poultry originating in Scotland, Mexico, and China. In the case of ST, human isolates assorted readily along host lines rather than geographical partitions with the majority of human STs clustering in a larger group of STs of potential porcine origin. Such observations may underscore the ecological importance of poultry and pork reservoirs for SE and ST transmission to humans, respectively. In an examination of the relationship between enzyme diversity and congruence among enzymes, pairwise genetic diversity ranged from 6.5% to 9.7% for SE isolates and, more widely, from 17.5% to 27.4% for ST isolates. Phylogenetic congruence measures singled out XbaI, BlnI, and SfiI as most concordant for SE while XbaI and SfiI were most concordant among ST strains. Thus, these data provide the first proof of principal for concatenated PFGE, when coupled with sufficient enzyme numbers and combinations, as one effective means for predicting geographical and food source reservoirs for human isolates of these two highly prevalent Salmonella

  2. Presence of avian influenza viruses in waterfowl and wetlands during summer 2010 in California: Are resident birds a potential reservoir?

    USGS Publications Warehouse

    Henaux, V.; Samuel, M.D.; Dusek, R.J.; Fleskes, J.P.; Ip, H.S.

    2012-01-01

    Although wild waterfowl are the main reservoir for low pathogenic avian influenza viruses (LPAIv), the environment plays a critical role for the circulation and persistence of AIv. LPAIv may persist for extended periods in cold environments, suggesting that waterfowl breeding areas in the northern hemisphere may be an important reservoir for AIv in contrast to the warmer southern wintering areas. We evaluated whether southern wetlands, with relatively small populations (thousands) of resident waterfowl, maintain AIv in the summer, prior to the arrival of millions of migratory birds. We collected water and fecal samples at ten wetlands in two regions (Yolo Bypass and Sacramento Valley) of the California Central Valley during three bi-weekly intervals beginning in late July, 2010. We detected AIv in 29/367 fecal samples (7.9%) and 12/597 water samples (2.0%) by matrix real time Reverse Transcription Polymerase Chain Reaction (rRT-PCR). We isolated two H3N8, two H2N3, and one H4N8 among rRT-PCR positive fecal samples but no live virus from water samples. Detection of AIv RNA in fecal samples was higher from wetlands in the Sacramento Valley (11.9%) than in the Yolo Bypass (0.0%), but no difference was found for water samples (2.7 vs. 1.7%, respectively). Our study showed that low densities of hosts and unfavorable environmental conditions did not prevent LPAIv circulation during summer in California wetlands. Our findings justify further investigations to understand AIv dynamics in resident waterfowl populations, compare AIv subtypes between migratory and resident waterfowl, and assess the importance of local AIv as a source of infection for migratory birds.

  3. Effects of mineral composition and pore structure in HC potential of reservoir rocks in the Western Foothill Belt, Taiwan

    NASA Astrophysics Data System (ADS)

    Lin, J. M.; Tsai, L. Y.

    2014-12-01

    The exploration of unconventional gas resource achieved a successful breakthrough in USA due to the innovation of hydraulic fracturing and horizontal drilling since 1995. The production of shale gas dramatically changed the energy structure and released the demand of fossil fuel in USA. Many studies about the unconventional oil-gas resource were performed worldwide especially in China, which provide very useful characterization for unconventional gas reservoirs. Since Taiwan has a strong energy demand and still highly relied on imported fossil fuel, the development of unconventional gas resource needs to be concerned. Therefore, the objective of this study is to evaluate the potential of unconventional oil-gas in Taiwan. In this study, we examine mineral composition and pore structure of Miocene oil-gas bearing strata from the Western Foothill Belt in Taiwan. Sandstone samples were collected from Cholan Fm, Yutengpin ss, Kuantaoshan ss, Shangfuchi ss, Tungkeng Fm, Guanyinshang ss and Peiliao Fm; whereas shale samples were collected from Chinshui sh and Talu sh, as well as outcropped coal sample from Nanchung Fm. The porosity, permeability, TOC, thermal maturity, and mineral composition of samples are examined after a series of geochemical experiments. Finally, after comparing the data with their gas sorption capacity, the reservoir with the strongest potential in unconventional gas resource can be identified.

  4. Fines migration, blocking, and clay swelling of potential geothermal sandstone reservoirs, Denmark

    SciTech Connect

    Priisholm, S.; Nielson, B.L.; Haslund, O.

    1987-06-01

    Medium-grained, moderately well-sorted sandstones of fluvio-deltaic to shallow marine origin have been investigated for fines production and for variations in porosity/permeability. Porosity and permeability change within small horizontal and vertical changes in sampling points. Also, air permeability depends on flow direction, Klinkenberg correction, and cleaning procedure. Klinkenberg-corrected permeability and brine permeability were found not to be comparable. Brine flow cause flines of kaolinite and quartz to be produced from the compacted sandstones, while uncompacted sandstones produced kaolinite, illite, and detrital minerals. Chlorites and mixed-layer clays were not produced as fines, although they were present in some samples. Reservoir damage occurred when formation brine was replaced by KCl-brine, at increase in flow velocity, and at pauses in flow. Changes in flow direction caused severe fines production, renewed bridging, and blocking by fines.

  5. Blue crabs Callinectes sapidus as potential biological reservoirs for white spot syndrome virus (WSSV).

    PubMed

    Powell, James W B; Browdy, Craig L; Burge, Erin J

    2015-03-01

    White spot syndrome virus (WSSV) is a virulent pathogen of cultured shrimp and was first detected in farms in South Carolina (USA) in 1997 and subsequently in wild shrimp in 1999. We screened groups of 1808 wild Atlantic white shrimp Litopenaeus setiferus and 300 blue crabs Callinectes sapidus collected from South Carolina, Georgia, and Florida for the presence of WSSV using the Shrimple® immunoassay-strip test, with all positives and random subsets of negatives tested by TaqMan real-time PCR and in infectivity bioassays. Of 87 shrimp and 11 crabs that tested positive using the Shrimple® test, only a single C. sapidus was confirmed to be infected with WSSV by PCR and the infectivity bioassay. The data indicate that the prevalence of WSSV in these species is low in these southeastern US regions, but that C. sapidus may serve as a biological reservoir. PMID:25751859

  6. Enemies and turncoats: bovine tuberculosis exposes pathogenic potential of Rift Valley fever virus in a common host, African buffalo (Syncerus caffer).

    PubMed

    Beechler, B R; Manore, C A; Reininghaus, B; O'Neal, D; Gorsich, E E; Ezenwa, V O; Jolles, A E

    2015-04-22

    The ubiquity and importance of parasite co-infections in populations of free-living animals is beginning to be recognized, but few studies have demonstrated differential fitness effects of single infection versus co-infection in free-living populations. We investigated interactions between the emerging bacterial disease bovine tuberculosis (BTB) and the previously existing viral disease Rift Valley fever (RVF) in a competent reservoir host, African buffalo, combining data from a natural outbreak of RVF in captive buffalo at a buffalo breeding facility in 2008 with data collected from a neighbouring free-living herd of African buffalo in Kruger National Park. RVF infection was twice as likely in individual BTB+ buffalo as in BTB- buffalo, which, according to a mathematical model, may increase RVF outbreak size at the population level. In addition, co-infection was associated with a far higher rate of fetal abortion than other infection states. Immune interactions between BTB and RVF may underlie both of these interactions, since animals with BTB had decreased innate immunity and increased pro-inflammatory immune responses. This study is one of the first to demonstrate how the consequences of emerging infections extend beyond direct effects on host health, potentially altering the dynamics and fitness effects of infectious diseases that had previously existed in the ecosystem on free-ranging wildlife populations. PMID:25788592

  7. Molecular identification of host feeding patterns of snow-melt mosquitoes (Diptera: Culicidae): potential implications for the transmission ecology of Jamestown Canyon virus.

    PubMed

    Murdock, C C; Olival, Kevin J; Perkins, Susan L

    2010-03-01

    We collected blood-fed, snow-melt mosquitoes (Culicidae: Culiseta and Aedes) to describe the feeding patterns of potential mosquito vectors of Jamestown Canyon virus (JCV, Bunyaviridae: Orthobunyavirus). JCV is an arthropod-borne, zoonotic virus with deer as the primary amplifying host in western alpine ecosystems. We collected mosquitoes from natural resting areas, fiber pots, and carbon-dioxide baited miniature light traps in the Colorado Rocky Mountains in 2007. We conducted two polymerase chain reactions to amplify and sequence vertebrate DNA extracted from blood-fed mosquitoes, which yielded comparable, but not identical, results. Mammal-specific primers found mule deer (Odocoileus hemionus) and elk (Cervus elaphus canadensis) as the source of all bloodmeals. To determine if unamplified bloodmeals were from nonmammalian sources, we screened all samples with conserved vertebrate primers, which confirmed the initial polymerase chain reaction results, but also found porcupine (Erethizon dorsatum) and human (Homo sapiens) as additional bloodmeal sources. We consistently found that mule deer were the primary hosts for mosquitoes in this system. These results suggest that snow-melt mosquitoes, in particular A. cataphylla, may be important vectors in western JCV alpine systems and may also act as a bridge vector for JCV from cervid virus reservoirs to humans. PMID:20380304

  8. Enemies and turncoats: bovine tuberculosis exposes pathogenic potential of Rift Valley fever virus in a common host, African buffalo (Syncerus caffer)

    PubMed Central

    Beechler, B. R.; Manore, C. A.; Reininghaus, B.; O'Neal, D.; Gorsich, E. E.; Ezenwa, V. O.; Jolles, A. E.

    2015-01-01

    The ubiquity and importance of parasite co-infections in populations of free-living animals is beginning to be recognized, but few studies have demonstrated differential fitness effects of single infection versus co-infection in free-living populations. We investigated interactions between the emerging bacterial disease bovine tuberculosis (BTB) and the previously existing viral disease Rift Valley fever (RVF) in a competent reservoir host, African buffalo, combining data from a natural outbreak of RVF in captive buffalo at a buffalo breeding facility in 2008 with data collected from a neighbouring free-living herd of African buffalo in Kruger National Park. RVF infection was twice as likely in individual BTB+ buffalo as in BTB− buffalo, which, according to a mathematical model, may increase RVF outbreak size at the population level. In addition, co-infection was associated with a far higher rate of fetal abortion than other infection states. Immune interactions between BTB and RVF may underlie both of these interactions, since animals with BTB had decreased innate immunity and increased pro-inflammatory immune responses. This study is one of the first to demonstrate how the consequences of emerging infections extend beyond direct effects on host health, potentially altering the dynamics and fitness effects of infectious diseases that had previously existed in the ecosystem on free-ranging wildlife populations. PMID:25788592

  9. A review on multicomponent seismology: A potential seismic application for reservoir characterization

    PubMed Central

    Farfour, Mohammed; Yoon, Wang Jung

    2015-01-01

    Searching for hydrocarbon reserves in deep subsurface is the main concern of wide community of geophysicists and geoscientists in petroleum industry. Exploration seismology has substantially contributed to finding and developing giant fields worldwide. The technology has evolved from two to three-dimensional method, and later added a fourth dimension for reservoir monitoring. Continuous depletion of many old fields and the increasing world consumption of crude oil pushed to consistently search for techniques that help recover more reserves from old fields and find alternative fields in more complex and deeper formations either on land and in offshore. In such environments, conventional seismic with the compressional (P) wave alone proved to be insufficient. Multicomponent seismology came as a solution to most limitations encountered in P-wave imaging. That is, recording different components of the seismic wave field allowed geophysicists to map complex reservoirs and extract information that could not be extracted previously. The technology demonstrated its value in many fields and gained popularity in basins worldwide. In this review study, we give an overview about multicomponent seismology, its history, data acquisition, processing and interpretation as well as the state-of the-art of its applications. Recent examples from world basins are highlighted. The study concludes that despite the success achieved in many geographical areas such as deep offshore in the Gulf of Mexico, Western Canada Sedimentary Basin (WCSB), North Sea, Offshore Brazil, China and Australia, much work remains for the technology to gain similar acceptance in other areas such as Middle East, East Asia, West Africa and North Africa. However, with the tremendous advances reported in data recording, processing and interpretation, the situation may change. PMID:27222756

  10. A review on multicomponent seismology: A potential seismic application for reservoir characterization.

    PubMed

    Farfour, Mohammed; Yoon, Wang Jung

    2016-05-01

    Searching for hydrocarbon reserves in deep subsurface is the main concern of wide community of geophysicists and geoscientists in petroleum industry. Exploration seismology has substantially contributed to finding and developing giant fields worldwide. The technology has evolved from two to three-dimensional method, and later added a fourth dimension for reservoir monitoring. Continuous depletion of many old fields and the increasing world consumption of crude oil pushed to consistently search for techniques that help recover more reserves from old fields and find alternative fields in more complex and deeper formations either on land and in offshore. In such environments, conventional seismic with the compressional (P) wave alone proved to be insufficient. Multicomponent seismology came as a solution to most limitations encountered in P-wave imaging. That is, recording different components of the seismic wave field allowed geophysicists to map complex reservoirs and extract information that could not be extracted previously. The technology demonstrated its value in many fields and gained popularity in basins worldwide. In this review study, we give an overview about multicomponent seismology, its history, data acquisition, processing and interpretation as well as the state-of the-art of its applications. Recent examples from world basins are highlighted. The study concludes that despite the success achieved in many geographical areas such as deep offshore in the Gulf of Mexico, Western Canada Sedimentary Basin (WCSB), North Sea, Offshore Brazil, China and Australia, much work remains for the technology to gain similar acceptance in other areas such as Middle East, East Asia, West Africa and North Africa. However, with the tremendous advances reported in data recording, processing and interpretation, the situation may change. PMID:27222756

  11. New Hosts for Equine Herpesvirus 9

    PubMed Central

    Tucker, Tammy A.; Donovan, Taryn A.; Busch, Martin D.M.; Wise, Annabel G.; Maes, Roger K.; Kiupel, Matti

    2008-01-01

    Equine herpesvirus 9 was detected in a polar bear with progressive encephalitis; the source was traced to 2 members of a potential equid reservoir species, Grevy’s zebras. The virus was also found in an aborted Persian onager. Thus, the natural host range is extended to 6 species in 3 mammalian orders. PMID:18826828

  12. Integration of photomosaics and stratigraphy in the Western Appalachian Basin as an aid to identify potential hydrocarbon reservoirs

    SciTech Connect

    Wegweiser, M.D.

    1996-09-01

    Paleozoic stratigraphy of the southern Lake Erie region is commonly interpreted as being dominated by flat-lying sedimentary rocks. Recent surface stratigraphic studies in New York, Pennsylvania, and Ohio have revealed the widespread presence of NW- and NE-trending folds and faults exposed along stream beds, and in bluffs along the southern Lake Erie shoreline. A black shale unit, previously unknown in northwestern Pennsylvania, was also discovered and its lateral continuity mapped. The shale forms a disconformable contact with the overlying Northeast Shale. Ship-based photomosaics were made of bluffs along Lake Erie, and integrated with land-based stratigraphic sections to map the continuity of units, identify displacement zones, and identify low amplitude folds. The black shale unit aided identification of offset and folding. Faults observed at the surface off-set Devonian and Mississippian rocks, and unconsolidated Quaternary sediments. Subsurface wrench faults, apparently extending into Precambrian rocks, have been identified by others. These wrench faults are generally perpendicular to the strike of the Appalachian Mountains, and are known as cross-strike discontinuities (CSDs). Principle zones of displacement associated with the CSDs can be recognized at the surface by numerous fractures having little offset, aligned drainage systems, and zones of increased hydrocarbon productivity and fluid migration. Increased hydrocarbons production occurs where reservoirs are cross-cut by the faults. The faults offset various reservoirs in Pennsylvania and Ohio in the subsurface. Identifying the location of these faults at the surface may provide information that leads top the discovery of new potential reservoirs.

  13. Scabies Mite Peritrophins Are Potential Targets of Human Host Innate Immunity

    PubMed Central

    Holt, Deborah C.; Kemp, Dave J.; Fischer, Katja

    2011-01-01

    Background Pruritic scabies lesions caused by Sarcoptes scabiei burrowing in the stratum corneum of human skin facilitate opportunistic bacterial infections. Emerging resistance to current therapeutics emphasizes the need to identify novel targets for protective intervention. We have characterized several protein families located in the mite gut as crucial factors for host-parasite interactions. Among these multiple proteins inhibit human complement, presumably to avoid complement-mediated damage of gut epithelial cells. Peritrophins are major components of the peritrophic matrix often found in the gut of arthropods. We hypothesized that a peritrophin, if abundant in the scabies mite gut, could be an activator of complement. Methodology/Principal Findings A novel full length scabies mite peritrophin (SsPTP1) was identified in a cDNA library from scabies mites. The amino acid sequence revealed four putative chitin binding domains (CBD). Recombinant expression of one CBD of the highly repetitive SsPTP1 sequence as TSP-hexaHis-fusion protein resulted in soluble protein, which demonstrated chitin binding activity in affinity chromatography assays. Antibodies against a recombinant SsPTP1 fragment were used to immunohistochemically localize native SsPTP1 in the mite gut and in fecal pellets within the upper epidermis, co-localizing with serum components such as host IgG and complement. Enzymatic deglycosylation confirmed strong N- and O-glycosylation of the native peritrophin. Serum incubation followed by immunoblotting with a monoclonal antibody against mannan binding lectin (MBL), the recognition molecule of the lectin pathway of human complement activation, indicated that MBL may specifically bind to glycosylated SsPTP1. Conclusions/Significance This study adds a new aspect to the accumulating evidence that complement plays a major role in scabies mite biology. It identifies a novel peritrophin localized in the mite gut as a potential target of the lectin pathway of

  14. "Features of two proteins of Leptospira interrogans with potential role in host-pathogen interactions"

    PubMed Central

    2012-01-01

    Background Leptospirosis is considered a re-emerging infectious disease caused by pathogenic spirochaetes of the genus Leptospira. Pathogenic leptospires have the ability to survive and disseminate to multiple organs after penetrating the host. Leptospires were shown to express surface proteins that interact with the extracellular matrix (ECM) and to plasminogen (PLG). This study examined the interaction of two putative leptospiral proteins with laminin, collagen Type I, collagen Type IV, cellular fibronectin, plasma fibronectin, PLG, factor H and C4bp. Results We show that two leptospiral proteins encoded by LIC11834 and LIC12253 genes interact with laminin in a dose - dependent and saturable mode, with dissociation equilibrium constants (KD) of 367.5 and 415.4 nM, respectively. These proteins were named Lsa33 and Lsa25 (Leptospiral surface adhesin) for LIC11834 and LIC12253, respectively. Metaperiodate - treated laminin reduced Lsa25 - laminin interaction, suggesting that sugar moieties of this ligand participate in this interaction. The Lsa33 is also PLG - binding receptor, with a KD of 23.53 nM, capable of generating plasmin in the presence of an activator. Although in a weak manner, both proteins interact with C4bp, a regulator of complement classical route. In silico analysis together with proteinase K and immunoflorescence data suggest that these proteins might be surface exposed. Moreover, the recombinant proteins partially inhibited leptospiral adherence to immobilized laminin and PLG. Conclusions We believe that these multifunctional proteins have the potential to participate in the interaction of leptospires to hosts by mediating adhesion and by helping the bacteria to escape the immune system and to overcome tissue barriers. To our knowledge, Lsa33 is the first leptospiral protein described to date with the capability of binding laminin, PLG and C4bp in vitro. PMID:22463075

  15. Interaction of spirochetes with the host fibrinolytic system and potential roles in pathogenesis.

    PubMed

    Vieira, Mônica Larucci; Nascimento, Ana Lucia T O

    2016-08-01

    The pathogenic spirochetes Borrelia burgdorferi, B. hermsii, B. recurrentis, Treponema denticola and Leptospira spp. are the etiologic agents of Lyme disease, relapsing fever, periodontitis and leptospirosis, respectively. Lyme borreliosis is a multi-systemic disorder and the most prevalent tick-borne disease in the northern hemisphere. Tick-borne relapsing fever is persistent in endemic areas worldwide, representing a significant burden in some African regions. Periodontal disease, a chronic inflammatory disorder that often leads to tooth loss, is caused by several potential pathogens found in the oral cavity including T. denticola. Leptospirosis is considered the most widespread zoonosis, and the predominant human disease in tropical, undeveloped regions. What these diseases have in common is that they are a significant burden to healthcare costs in the absence of prophylactic measures. This review addresses the interaction of these spirochetes with the fibrinolytic system, plasminogen (Plg) binding to the surface of bacteria and the generation of plasmin (Pla) on their surface. The consequences on host-pathogen interactions when the spirochetes are endowed with this proteolytic activity are discussed on the basis of the results reported in the literature. Spirochetes equipped with Pla activity have been shown to degrade extracellular matrix (ECM) components, in addition to digesting fibrin, facilitating bacterial invasion and dissemination. Pla generation triggers the induction of matrix metalloproteases (MMPs) in a cascade of events that enhances the proteolytic capacity of the spirochetes. These activities in concert with the interference exerted by the Plg/Pla on the complement system - helping the bacteria to evade the immune system - should illuminate our understanding of the mechanisms involved in host infection. PMID:25914944

  16. Potential effects of erythromycin on host defense systems and virulence of Pseudomonas aeruginosa.

    PubMed Central

    Hirakata, Y; Kaku, M; Mizukane, R; Ishida, K; Furuya, N; Matsumoto, T; Tateda, K; Yamaguchi, K

    1992-01-01

    We evaluated several potential effects of erythromycin (EM) on host defense systems and the virulence of Pseudomonas aeruginosa. Peritoneal macrophages obtained from mice given 250 mg of EM per kg of body weight for 7 days by the intraperitoneal, intravenous, subcutaneous, or oral route produced significantly greater amounts of thymocyte-activating factors. These data suggest that EM enhances the in vivo production of cytokines, such as interleukins 1 and 6. Treatment of P. aeruginosa D4 with subinhibitory concentrations of EM enhanced the association of bacteria with murine Kupffer cells in vitro and increased bacterial clearance from the blood in mice. EM suppressed the in vitro production of exotoxin A, total protease, elastase, and phospholipase C by P. aeruginosa D4; exotoxin A production by P. aeruginosa PA-103; and total protease production by P. aeruginosa B16 and PAO1 in a generally dose-dependent manner. These data demonstrate that EM produces various effects in addition to its direct antimicrobial activity, suggesting that it has potential as an immunomodulator or bacterial virulence-suppressing agent against P. aeruginosa and other infections. PMID:1416882

  17. The potential for hydrocarbon biodegradation and production of extracellular polymeric substances by aerobic bacteria isolated from a Brazilian petroleum reservoir.

    PubMed

    Vasconcellos, S P; Dellagnezze, B M; Wieland, A; Klock, J-H; Santos Neto, E V; Marsaioli, A J; Oliveira, V M; Michaelis, W

    2011-06-01

    Extracellular polymeric substances (EPS) can contribute to the cellular degradation of hydrocarbons and have a huge potential for application in biotechnological processes, such as bioremediation and microbial enhanced oil recovery (MEOR). Four bacterial strains from a Brazilian petroleum reservoir were investigated for EPS production, emulsification ability and biodegradation activity when hydrocarbons were supplied as substrates for microbial growth. Two strains of Bacillus species had the highest EPS production when phenanthrene and n-octadecane were offered as carbon sources, either individually or in a mixture. While Pseudomonas sp. and Dietzia sp., the other two evaluated strains, had the highest hydrocarbon biodegradation indices, EPS production was not detected. Low EPS production may not necessarily be indicative of an absence of emulsifier activity, as indicated by the results of a surface tension reduction assay and emulsification indices for the strain of Dietzia sp. The combined results gathered in this work suggest that a microbial consortium consisting of bacteria with interdependent metabolisms could thrive in petroleum reservoirs, thus overcoming the limitations imposed on each individual species by the harsh conditions found in such environments. PMID:25187151

  18. Geochemically Homogeneous Tuffs Host the Potential Nuclear Waste Repository, Yucca Mountain, Nevada

    SciTech Connect

    Z.E. Peterman

    2001-07-13

    In evaluating a geological environment for the disposition of nuclear waste, the composition of the host rock is an important parameter in characterizing the natural system and its role as a barrier to migration of radionuclides. Emplacement drifts in a potential nuclear waste repository at Yucca Mountain, Nevada, would be constructed in the lower phenocryst-poor rhyolitic member ({approx}300 m thick) of the Topopah Spring Tuff, a felsic pyroclastic ash flow. The rhyolitic member, composed largely of microcrystalline quartz and alkali feldspar, contains localized secondary minerals including vapor-phase silica polymorphs and feldspar typically lining lithophysal cavities, and low-temperature calcite and opal in cavities and fractures. Chemical analyses of Topopah Spring Tuff samples from outcrops and from core obtained by surface-based drilling have shown that the phenocryst-poor rhyolite member at Yucca Mountain is remarkably uniform in composition both vertically and laterally. To verify this geochemical homogeneity in samples collected directly from the repository block where emplacement drifts would be constructed, major and trace elements were analyzed for core samples obtained from 20 systematically spaced drill holes in a drift constructed across the repository block. Means and standard deviations of selected oxides and elements in weight percent indicate geochemical uniformity among these samples: SiO{sub 2}, 76.29 {+-} 0.32; Al{sub 2}O{sub 3}, 12.55 {+-} 0.14; FeO, 0.13 {+-} 0.05; Fe{sub 2}O{sub 3}, 0.97 {+-} 0.07; MgO, 0.12 {+-} 0.02; CaO, 0.50 {+-} 0.03; Na{sub 2}O, 3.52 {+-} 0.11; K{sub 2}O, 4.83 {+-} 0.06; TiO{sub 2}, 0.109 {+-} 0.004; ZrO{sub 2}, 0.016 {+-} 0.001; MnO, 0.068 {+-} 0.008; Cl, 0.017 {+-} 0.004; F, 0.038 {+-} 0.008; and CO{sub 2}, 0.011 {+-} 0.003. Means and standard deviations of selected trace elements, in micrograms per gram, also indicate small compositional variability: Ba, 51 {+-} 12; Cs, 4.2 {+-} 0.3; Li, 25 {+-} 9; Pb, 27 {+-} 1

  19. The Potential for Cereal Rye Cover Crops to Host Corn Seedling Pathogens.

    PubMed

    Bakker, Matthew G; Acharya, Jyotsna; Moorman, Thomas B; Robertson, Alison E; Kaspar, Thomas C

    2016-06-01

    Cover cropping is a prevalent conservation practice that offers substantial benefits to soil and water quality. However, winter cereal cover crops preceding corn may diminish beneficial rotation effects because two grass species are grown in succession. Here, we show that rye cover crops host pathogens capable of causing corn seedling disease. We isolated Fusarium graminearum, F. oxysporum, Pythium sylvaticum, and P. torulosum from roots of rye and demonstrate their pathogenicity on corn seedlings. Over 2 years, we quantified the densities of these organisms in rye roots from several field experiments and at various intervals of time after rye cover crops were terminated. Pathogen load in rye roots differed among fields and among years for particular fields. Each of the four pathogen species increased in density over time on roots of herbicide-terminated rye in at least one field site, suggesting the broad potential for rye cover crops to elevate corn seedling pathogen densities. The radicles of corn seedlings planted following a rye cover crop had higher pathogen densities compared with seedlings following a winter fallow. Management practices that limit seedling disease may be required to allow corn yields to respond positively to improvements in soil quality brought about by cover cropping. PMID:26926485

  20. Transcriptional Portrait of Actinobacillus pleuropneumoniae during Acute Disease - Potential Strategies for Survival and Persistence in the Host

    PubMed Central

    Klitgaard, Kirstine; Friis, Carsten; Jensen, Tim K.; Angen, Øystein; Boye, Mette

    2012-01-01

    Background Gene expression profiles of bacteria in their natural hosts can provide novel insight into the host-pathogen interactions and molecular determinants of bacterial infections. In the present study, the transcriptional profile of the porcine lung pathogen Actinobacillus pleuropneumoniae was monitored during the acute phase of infection in its natural host. Methodology/Principal Findings Bacterial expression profiles of A. pleuropneumoniae isolated from lung lesions of 25 infected pigs were compared in samples taken 6, 12, 24 and 48 hours post experimental challenge. Within 6 hours, focal, fibrino hemorrhagic lesions could be observed in the pig lungs, indicating that A. pleuropneumoniae had managed to establish itself successfully in the host. We identified 237 differentially regulated genes likely to encode functions required by the bacteria for colonization and survival in the host. This group was dominated by genes involved in various aspects of energy metabolism, especially anaerobic respiration and carbohydrate metabolism. Remodeling of the bacterial envelope and modifications of posttranslational processing of proteins also appeared to be of importance during early infection. The results suggested that A. pleuropneumoniae is using various strategies to increase its fitness, such as applying Na+ pumps as an alternative way of gaining energy. Furthermore, the transcriptional data provided potential clues as to how A. pleuropneumoniae is able to circumvent host immune factors and survive within the hostile environment of host macrophages. This persistence within macrophages may be related to urease activity, mobilization of various stress responses and active evasion of the host defenses by cell surface sialylation. Conclusions/Significance The data presented here highlight the importance of metabolic adjustments to host conditions as virulence factors of infecting microorganisms and help to provide insight into the mechanisms behind the efficient

  1. An integrated petrophysical-geophysical approach for the characterization of a potential caprock-reservoir system for CO2 storage.

    NASA Astrophysics Data System (ADS)

    Fais, Silvana; Ligas, Paola; Cuccuru, Francesco; Casula, Giuseppe; Giovanna Bianchi, Maria; Maggio, Enrico; Plaisant, Alberto; Pettinau, Alberto

    2016-04-01

    The selection of a CO2 geologic storage site requires the choice of a study site suitable for the characterization in order to create a robust experimental database especially regarding the spatial petrophysical heterogeneities and elasto-mechanical properties of the rocks that make up a potential caprock-reservoir system. In our study the petrophysical and elasto-mechanical characterization began in a previously well drilled area in the northern part of the Sulcis coal basin (Nuraxi Figus area - SW Sardinia - Italy) where crucial geologic data were recovered from high-quality samples from stratigraphic wells and from mining galleries. The basin represents one of the most important Italian carbon reserves characterized by a great mining potential. In the study area, the Middle Eocene - Lower Oligocene Cixerri Fm. made up of terrigeneous continental rocks and the Upper Thanetian - Lower Ypresian Miliolitico Carbonate Complex in the Sulcis coal basin have been identified respectively as potential caprock and reservoir for CO2 storage. Petrophysical and geophysical investigations were carried out by a great number of laboratory tests on the core samples and in situ measurements on a mining gallery in order to characterize the potential caprock-reservoir system and to substantially reduce geologic uncertainty in the storage site characterization and in the geological and numerical modelling for the evaluation of CO2 storage capacity. In order to better define the spatial distribution of the petrophysical heterogeneity, the seismic responses from the caprock-reservoir system formations were also analysed and correlated with the petrophysical and elasto-mechanical properties In a second step of this work, we also analysed the tectonic stability of the study area by the integrated application of remote-sensing monitoring spatial geodetic techniques. In particular, the global positioning system (GPS) and interferometric synthetic aperture radar (inSAR) were considered

  2. Diagenesis and reservoir potential of volcanogenic sandstones - Cretaceous of the Surat Basin, Queensland, Australia

    SciTech Connect

    Hawlader, H.M. )

    1990-06-01

    The sandstones of the Lower Cretaceous succession of the Surat basin are characterized by abundant volcanogenic detritus in the form of rock-fragments and feldspars derived from an andesitic magmatic arc coincident with the present Great Barrier Reef in offshore Queensland. These compositionally immature sandstones are not regarded as favorable exploration targets because of their labile nature, their shallow burial depths, and hence the low thermal maturity of the intercalated mudrocks that might have constituted hydrocarbon source rocks. However, petrographic and petrophysical examinations show that significant primary and early diagenetic secondary dissolution porosity and permeability exist in some of these stratigraphic units that under certain circumstances could be the host for hydrocarbons and may become the future exploration targets. Flushing by CO{sub 2}-charged meteoric water after the inception of the Great Artesian basin (of which the Surat basin is a component) in the Tertiary is likely to have been the principal agent of secondary porosity development in these sandstones. Additionally, products of microbial degradation of organic matter (in the intercalated mudstones) and/or maturation products from the deeply buried part of the basin might have assisted in the dissolution of framework grains and previously deposited cement.

  3. Evaluation of 31 Potential Biofumigant Brassicaceous Plants as Hosts for Three Meloiodogyne Species

    PubMed Central

    Edwards, Scott; Ploeg, Antoon

    2014-01-01

    Brassicaceous cover crops can be used for biofumigation after soil incorporation of the mowed crop. This strategy can be used to manage root-knot nematodes (Meloidogyne spp.), but the fact that many of these crops are host to root-knot nematodes can result in an undesired nematode population increase during the cultivation of the cover crop. To avoid this, cover crop cultivars that are poor or nonhosts should be selected. In this study, the host status of 31 plants in the family Brassicaceae for the three root-knot nematode species M. incognita, M. javanica, and M. hapla were evaluated, and compared with a susceptible tomato host in repeated greenhouse pot trials. The results showed that M. incognita and M. javanica responded in a similar fashion to the different cover cultivars. Indian mustard (Brassica juncea) and turnip (B. rapa) were generally good hosts, whereas most oil radish cultivars (Raphanus. sativus ssp. oleiferus) were poor hosts. However, some oil radish cultivars were among the best hosts for M. hapla. The arugula (Eruca sativa) cultivar Nemat was a poor host for all three nematode species tested. This study provides important information for chosing a cover crop with the purpose of managing root-knot nematodes. PMID:25276003

  4. Evaluation of 31 potential biofumigant brassicaceous plants as hosts for three meloiodogyne species.

    PubMed

    Edwards, Scott; Ploeg, Antoon

    2014-09-01

    Brassicaceous cover crops can be used for biofumigation after soil incorporation of the mowed crop. This strategy can be used to manage root-knot nematodes (Meloidogyne spp.), but the fact that many of these crops are host to root-knot nematodes can result in an undesired nematode population increase during the cultivation of the cover crop. To avoid this, cover crop cultivars that are poor or nonhosts should be selected. In this study, the host status of 31 plants in the family Brassicaceae for the three root-knot nematode species M. incognita, M. javanica, and M. hapla were evaluated, and compared with a susceptible tomato host in repeated greenhouse pot trials. The results showed that M. incognita and M. javanica responded in a similar fashion to the different cover cultivars. Indian mustard (Brassica juncea) and turnip (B. rapa) were generally good hosts, whereas most oil radish cultivars (Raphanus. sativus ssp. oleiferus) were poor hosts. However, some oil radish cultivars were among the best hosts for M. hapla. The arugula (Eruca sativa) cultivar Nemat was a poor host for all three nematode species tested. This study provides important information for chosing a cover crop with the purpose of managing root-knot nematodes. PMID:25276003

  5. Olfactory host finding, intermediate memory and its potential ecological adaptation in Nasonia vitripennis

    NASA Astrophysics Data System (ADS)

    Schurmann, Daria; Collatz, Jana; Hagenbucher, Steffen; Ruther, Joachim; Steidle, Johannes L. M.

    2009-03-01

    Associative learning of host-associated chemical cues was studied in Nasonia vitripennis, a parasitoid of fly pupae in nests of hole-nesting birds. When females encountered a fly pupa and performed one sequence of host recognition behaviour including drilling the ovipositor into the host in the presence of the artificial odour furfurylheptanoate (FFH), they were afterwards arrested by FFH in olfactometer experiments. The response vanished after 4 days and could be blocked after 3 days by feeding wasps with ethacrynic acid prior and after the training. This indicates the formation of an intermediate form of memory by one host experience in N. vitripennis. Interestingly, the trained wasps avoided odours that were not present during the host encounter, although naive wasps did not react to these odours. This unique behaviour probably causes wasps to focus during host searching on those chemical cues they have experienced in the host environment. Studies in nests of hole-nesting birds revealed that about 30% of all nests contained only one fly pupa, and laboratory studies showed that N. vitripennis females are able to parasitise around 100 fly pupae in their life. It is discussed that under these conditions, the formation of a non-permanent intermediate memory for host-associated odours after one host encounter is adaptive to avoid costs involved with formation and maintenance of memory for misleading cues. The demonstration of associative olfactory learning in N. vitripennis, the first parasitoid species with sequenced genome, opens the gate to study molecular mechanisms of memory formation and its ecological adaptation in parasitoids.

  6. Host specificity assessment and potential impact of Megamelus scutellaris Berg (Hemiptera: Delphacidae) on waterhyacinth (Eichhornia crassipes Mart. Pontederiales: Pontederiaceae)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The delphacid Megamelus scutellaris Berg was evaluated for host specificity and potential impact as part of a biological control program targeting E. crassipes. Survival and development of adults and nymphs were used as metrics with no-choice, choice, nymph transfer, and sustainability tests conduc...

  7. Characterization of chromophoric dissolved organic matter and trihalomethane formation potential in a recently constructed reservoir and the surrounding areas - Impoundment effects

    NASA Astrophysics Data System (ADS)

    Hur, Jin; Lee, Bo-Mi; Lee, Seungyoon; Shin, Jae-Ki

    2014-07-01

    The effects of the dam impoundment on the distribution of chromophoric dissolved organic matter (CDOM) were evaluated for a dam reservoir (the Gunwi reservoir) at an early impoundment stage by comparing the characteristics of CDOM and trihalomethane (THM) precursors among the upstream catchment areas, the dam reservoir, and a downstream site. Sampling was conducted for two separate sampling periods of a non-storm event in May and a storm event in August, 2012. The dam reservoir had experienced long-term enrichment of non-biodegradable organic matter since its construction in February, 2010. In May, significant differences were observed in several selected CDOM properties between the upstream catchments and the locations affected by the impoundment (i.e., within the reservoir and the downstream sites). For the storm event, however, such impoundment effects became much less pronounced likely due to elevated input of CDOM with terrestrial origin into the reservoir. Specific THM formation potential (STHMFP) did not show the same spatial distinction as those of CDOM for both sampling periods. Three fluorophore groups were identified from fluorescence excitation-emission matrices (EEMs) of the collected samples by parallel factor analysis (PARAFAC) modeling. Protein-like and microbial humic-like components were relatively more enriched for the impoundment-affected sites compared to the upstream locations, in which terrestrial humic-like component was more dominant. Principal component analysis (PCA) demonstrated that the accumulation of non-biodegradable organic matter in the dam reservoir might be attributed to microbial humification of the algal-derived organic substances originated from either periphytons flushed from upstream stream beds or decomposing algae settled on the bottom of the reservoir, or both.

  8. The European hare (Lepus europaeus) as a potential wild reservoir for ruminant pestiviruses.

    PubMed

    Colom-Cadena, A; Cabezón, O; Rosell, R; Fernández-Aguilar, X; Blanch-Lázaro, B; Tetas, E; Lavín, S; Marco, I

    2016-09-01

    Ruminant pestiviruses cause important economic losses in livestock and the epidemiological role of free-ranging sympatric wildlife is of special interest for the implementation of pestivirus eradication plans. Moreover, the emergence of high mortality outbreaks of pestivirus in Pyrenean chamois (Rupicapra pyrenaica pyrenaica) since 2001 in the border between Spain and France has increased the value of knowing the hosts that role pestivirus infection. In the present study, pestivirus infection was assessed in 94 sera from wild hunted European hares (Lepus europaeus) collected in two different areas: Pyrenees (alpine and subalpine ecosystems) versus Non Pyrenees (non alpine and subalpine ecosystems). The presence of antibodies against Border Disease Virus (BDV) and Bovine Viral Diarrhea Virus (BVDV) was evaluated by means of the Virus Neutralization Test and the presence of viral RNA in sera samples was assessed by Reverse transcription-polymerase chain reaction (RT-PCR). A total of 34 out of 94 (36.2%; CI95 0.26-0.46) sera presented neutralizing antibodies against ruminant pestiviruses, and significant differences between BDV4 and BVDV1 titres were found in 7 hares. In the Pyrenean area not statistically significant seroprevalence was observed when comparing with the Non Pyrenean area. RT-PCR analysis of sera samples resulted all negative. The results of the present study indicate that the European hare is susceptible to pestivirus infection and that could be involved in the epidemiology of ruminant pestiviruses. To the authors' knowledge, this is the third wild non-artiodactyl with reported antibodies against ruminant pestivirus after the rabbit and Bennet's wallaby. PMID:27544252

  9. [Echinococcus multilocularis in Grisons: distribution in foxes and presence of potential intermediate hosts].

    PubMed

    Tanner, F; Hegglin, D; Thoma, R; Brosi, G; Deplazes, P

    2006-09-01

    The southern border of the European endemic area of Echinococcus multilocularis runs along the alpine crest. This endemic transition area was analysed in the canton Grisons on a small spatial scale. A total of 543 foxes originating from 10 areas north and 4 areas south of the main alpine divide were investigated. Parasites were isolated using the sedimentation and counting technique on intestinal contents. The mean prevalence of E. multilocularis was 6.4% with significant differences between different areas. In the southern valleys, only foxes from the Val Müstair were infected (14.3%). On the northern side of the main alpine divide, prevalences varied between 0 and 40%. The predation habits of foxes on potential intermediate hosts was investigated by means of stomach content analyses (n=530). Rodents of the genera Microtus/Pitymys were found in 19.6% of fox stomachs, Clethrionomys glareolus in 8.0% and Arvicola terrestris in 0.4%. A small scale analysis based on a 10 x 10 km grid suggested that the predation rate on the genera Microtus/Pitymys significantly correlated with the prevalence of E. multilocularis in foxes (Spearman's r = 0.51). Hence, E. multilocularis appears to occur in the alpine study area on a very small spatial scale. These local sources of infection may persist for decades. This may partly explains why, during the last 34 years, some human cases of alveolar echinococcosis occurred in areas of the Canton Grisons where the parasite is presently endemic in foxes. No such human cases have been recorded in other areas free of E. multilocularis. PMID:17024979

  10. Potential non-tertiary additional oil recovery from heterogeneous submarine-fan reservoirs, Spraberry-Benedum field, Midland basin, Texas

    SciTech Connect

    Guevara, E.H.; Worrall, J.G.; Walter, T.

    1987-05-01

    The Spraberry-Benedum field is a multipay, solution-gas drive, combined structural-stratigraphic trap. It contains approximately 200 million bbl of original oil in place and has been waterflooded since 1967. Producing intervals are in the Spraberry formation (Permian, Leonardian), which in this area consists of mixed-sediment submarine-fan deposits (upper and lower Spraberry) and basin-plain facies (middle Spraberry). Principal oil reservoirs, with 12% average porosity and permeabilities of less than 1 md, occur in the lower and upper Spraberry. They consist of naturally fractured, very fine-grained sandstones and coarse siltstones of braided and meandering, peripheral channels and associated outer fan facies. Complex facies architecture results in highly heterogeneous reservoirs. Oil accumulations are layered because basin-plain shales vertically separate submarine-fan reservoirs, and they are laterally compartmentalized due to the channelization of reservoir rocks. Production trends locally parallel to facies trends indicate that recovery is influenced by reservoir stratigraphy. Well locations, based only on structural position and fracture orientation, commonly do not conform to the axes of belts of greatest sandstone-siltstone thickness, which contain the best reservoirs. Furthermore, completion intervals do not systematically tap both lower and upper Spraberry reservoirs. Ultimate recovery will be improved by aggressive development programs aimed at producing from poorly drained traps created by reservoir heterogeneities. Recompletion and deepening of wells, strategic infill drilling, and injection patterns in such programs should be based on detailed reservoir stratigraphy, in addition to structure and fracture data.

  11. The Monogenean Parasite Fauna of Cichlids: A Potential Tool for Host Biogeography

    PubMed Central

    Pariselle, Antoine; Boeger, Walter A.; Snoeks, Jos; Bilong Bilong, Charles F.; Morand, Serge; Vanhove, Maarten P. M.

    2011-01-01

    We discuss geographical distribution and phylogeny of Dactylogyridea (Monogenea) parasitizing Cichlidae to elucidate their hosts' history. Although mesoparasitic Monogenea (Enterogyrus spp.) show typical vicariant distribution, ectoparasitic representatives from different continents are not considered sister taxa, hence their distribution cannot result from vicariance alone. Because of the close host-parasite relationship, this might indicate that present-day cichlid distribution may also reflect dispersal through coastal or brackish waters. Loss of ectoparasites during transoceanic migration, followed by lateral transfer from other fish families might explain extant host-parasite associations. Because of its mesoparasitic nature, hence not subject to salinity variations of the host's environment, Enterogyrus could have survived marine migrations, intolerable for ectoparasites. Host-switches and salinity transitions may be invoked to explain the pattern revealed by a preliminary morphological phylogeny of monogenean genera from Cichlidae and other selected Monogenea genera, rendering the parasite distribution explicable under both vicariance and dispersal. Testable hypotheses are put forward in this parasitological approach to cichlid biogeography. Along with more comprehensive in-depth morphological phylogeny, comparison with molecular data, clarifying dactylogyridean evolution on different continents and from various fish families, and providing temporal information on host-parasite history, are needed to discriminate between the possible scenarios. PMID:21869935

  12. Evaluation of potential geothermal reservoirs in central and western New York state. Final report

    SciTech Connect

    Not Available

    1983-06-01

    Computer processes geophysical well logs from central and western New York State were analyzed to evaluate the potential of subsurface formations as a source for low-temperature geothermal water. The analysis indicated that porous sandstone sections at the top of the Ordovician Theresa Formation and at the base of the Cambrian Potsdam Formation have the required depth, porosity, and permeability to act as a source for geothermal fluids over a relatively large area in the central part of the state. The fluid potential plus an advantageous geothermal gradient and the results of the test well drilled in the city of Auburn in Cayuga County suggest that low temperature geothermal energy may be a viable alternative to other more conventional forms of energy that are not indigenous to New York State.

  13. Evaluation of potential geothermal reservoirs in central and western New York State. Volume 3. Final report

    SciTech Connect

    Not Available

    1983-06-01

    Computer processed geophysical well logs from central and western New York State were analysed to evaluate the potential of subsurface formations as a source for low-temperature geothermal water. The analysis indicated that porous sandstone sections at the top of the Ordovician Theresa Formation and at the base of the Cambrian Potsdam Formation have the required depth, porosity, and permeability to act as a source for geothermal fluids over a relatively large area in the central part of the state. The fluid potential plus an advantageous geothermal gradient and the results of the test well drilled in the city of Auburn in Cayuga County suggest that low temperature geothermal energy may ba a viable alternative to other more conventional forms of energy that not indigenous to New York State.

  14. Undiscovered Bat Hosts of Filoviruses.

    PubMed

    Han, Barbara A; Schmidt, John Paul; Alexander, Laura W; Bowden, Sarah E; Hayman, David T S; Drake, John M

    2016-07-01

    Ebola and other filoviruses pose significant public health and conservation threats by causing high mortality in primates, including humans. Preventing future outbreaks of ebolavirus depends on identifying wildlife reservoirs, but extraordinarily high biodiversity of potential hosts in temporally dynamic environments of equatorial Africa contributes to sporadic, unpredictable outbreaks that have hampered efforts to identify wild reservoirs for nearly 40 years. Using a machine learning algorithm, generalized boosted regression, we characterize potential filovirus-positive bat species with estimated 87% accuracy. Our model produces two specific outputs with immediate utility for guiding filovirus surveillance in the wild. First, we report a profile of intrinsic traits that discriminates hosts from non-hosts, providing a biological caricature of a filovirus-positive bat species. This profile emphasizes traits describing adult and neonate body sizes and rates of reproductive fitness, as well as species' geographic range overlap with regions of high mammalian diversity. Second, we identify several bat species ranked most likely to be filovirus-positive on the basis of intrinsic trait similarity with known filovirus-positive bats. New bat species predicted to be positive for filoviruses are widely distributed outside of equatorial Africa, with a majority of species overlapping in Southeast Asia. Taken together, these results spotlight several potential host species and geographical regions as high-probability targets for future filovirus surveillance. PMID:27414412

  15. Undiscovered Bat Hosts of Filoviruses

    PubMed Central

    Schmidt, John Paul; Alexander, Laura W.; Bowden, Sarah E.; Hayman, David T. S.; Drake, John M.

    2016-01-01

    Ebola and other filoviruses pose significant public health and conservation threats by causing high mortality in primates, including humans. Preventing future outbreaks of ebolavirus depends on identifying wildlife reservoirs, but extraordinarily high biodiversity of potential hosts in temporally dynamic environments of equatorial Africa contributes to sporadic, unpredictable outbreaks that have hampered efforts to identify wild reservoirs for nearly 40 years. Using a machine learning algorithm, generalized boosted regression, we characterize potential filovirus-positive bat species with estimated 87% accuracy. Our model produces two specific outputs with immediate utility for guiding filovirus surveillance in the wild. First, we report a profile of intrinsic traits that discriminates hosts from non-hosts, providing a biological caricature of a filovirus-positive bat species. This profile emphasizes traits describing adult and neonate body sizes and rates of reproductive fitness, as well as species’ geographic range overlap with regions of high mammalian diversity. Second, we identify several bat species ranked most likely to be filovirus-positive on the basis of intrinsic trait similarity with known filovirus-positive bats. New bat species predicted to be positive for filoviruses are widely distributed outside of equatorial Africa, with a majority of species overlapping in Southeast Asia. Taken together, these results spotlight several potential host species and geographical regions as high-probability targets for future filovirus surveillance. PMID:27414412

  16. Seawater is a reservoir of multi-resistant Escherichia coli, including strains hosting plasmid-mediated quinolones resistance and extended-spectrum beta-lactamases genes

    PubMed Central

    Alves, Marta S.; Pereira, Anabela; Araújo, Susana M.; Castro, Bruno B.; Correia, António C. M.; Henriques, Isabel

    2014-01-01

    The aim of this study was to examine antibiotic resistance (AR) dissemination in coastal water, considering the contribution of different sources of fecal contamination. Samples were collected in Berlenga, an uninhabited island classified as Natural Reserve and visited by tourists for aquatic recreational activities. To achieve our aim, AR in Escherichia coli isolates from coastal water was compared to AR in isolates from two sources of fecal contamination: human-derived sewage and seagull feces. Isolation of E. coli was done on Chromocult agar. Based on genetic typing 414 strains were established. Distribution of E. coli phylogenetic groups was similar among isolates of all sources. Resistances to streptomycin, tetracycline, cephalothin, and amoxicillin were the most frequent. Higher rates of AR were found among seawater and feces isolates, except for last-line antibiotics used in human medicine. Multi-resistance rates in isolates from sewage and seagull feces (29 and 32%) were lower than in isolates from seawater (39%). Seawater AR profiles were similar to those from seagull feces and differed significantly from sewage AR profiles. Nucleotide sequences matching resistance genes blaTEM, sul1, sul2, tet(A), and tet(B), were present in isolates of all sources. Genes conferring resistance to 3rd generation cephalosporins were detected in seawater (blaCTX-M-1 and blaSHV-12) and seagull feces (blaCMY-2). Plasmid-mediated determinants of resistance to quinolones were found: qnrS1 in all sources and qnrB19 in seawater and seagull feces. Our results show that seawater is a relevant reservoir of AR and that seagulls are an efficient vehicle to spread human-associated bacteria and resistance genes. The E. coli resistome recaptured from Berlenga coastal water was mainly modulated by seagulls-derived fecal pollution. The repertoire of resistance genes covers antibiotics critically important for humans, a potential risk for human health. PMID:25191308

  17. The reservoir of ozone in the boundary layer of the eastern United States and its potential impact on the global tropospheric ozone budget

    NASA Technical Reports Server (NTRS)

    Vukovich, F. M.; Fishman, J.; Browell, E. V.

    1985-01-01

    An analysis of available ozone data in the eastern two-thirds of the United States indicates that a substantial reservoir of ozone is present in the summertime. Five-year mean concentrations range from 40 to 65 ppbv. The reservoir covered an area of several million square kilometers and extends vertically from the surface to 1 to 2 km. The vertical distribution of ozone in the reservoir during midday supports a transport of additional ozone from the boundary layer to the free troposphere. Data are presented demonstrating the potential effect of transport by convective clouds and by the sea breeze circulation - mechanisms by which ozone may be transported out of the boundary layer into the free troposphere. The potential impact of this reservoir on the tropospheric ozone budget is discussed. It is shown that if less than half of the ozone mass in this reservoir is transported to the free troposphere, then the amount of ozone transported out of the boundary layer approximates the amount of ozone transported downward during a tropopause fold event.

  18. Evaluation of sediments in the Middle Rio Grande, Elephant Butte Reservoir, and Caballo Reservoir as potential sources for toxic materials. Technical report

    SciTech Connect

    Popp, C.J.; Brandvold, D.K.; Lynch, T.R.; Brandvold, L.A.

    1983-03-01

    The distribution of a large number of priority pollutant trace metal and organic species in water and sediments in surface waters in the Middle Rio Grande region of New Mexico has been surveyed. In addition to sediments and water, limnological data was collected on the reservoirs, radionuclide and particle size analysis was performed on the sediments and a limited number of fish were surveyed for trace metals and organics. The sediments carry elevated levels of the metals Hg, Cd, As, Se, and U and fish may be biomagnifying Hg, Pb, and V through the food chain. Detectable levels of 18 different chlorinated organic pesticides were found in samples of water and bottom sediments.

  19. Amnion and Chorion Membranes: Potential Stem Cell Reservoir with Wide Applications in Periodontics

    PubMed Central

    2015-01-01

    The periodontal therapy usually aims at elimination of disease causing bacteria and resolution of inflammation. It involves either resective or regenerative surgery to resolve the inflammation associated defects. Over the years, several methods have been used for achievement of periodontal regeneration. One of the oldest biomaterials used for scaffolds is the fetal membrane. The amniotic membranes of developing embryo, that is, amnion (innermost lining) and chorion (a layer next to it), have the properties with significant potential uses in dentistry. This paper reviews the properties, mechanism of action, and various applications of these placental membranes in general and specifically in Periodontics. PMID:26770199

  20. Microbial redox processes in deep subsurface environments and the potential application of (per)chlorate in oil reservoirs.

    PubMed

    Liebensteiner, Martin G; Tsesmetzis, Nicolas; Stams, Alfons J M; Lomans, Bartholomeus P

    2014-01-01

    The ability of microorganisms to thrive under oxygen-free conditions in subsurface environments relies on the enzymatic reduction of oxidized elements, such as sulfate, ferric iron, or CO2, coupled to the oxidation of inorganic or organic compounds. A broad phylogenetic and functional diversity of microorganisms from subsurface environments has been described using isolation-based and advanced molecular ecological techniques. The physiological groups reviewed here comprise iron-, manganese-, and nitrate-reducing microorganisms. In the context of recent findings also the potential of chlorate and perchlorate [jointly termed (per)chlorate] reduction in oil reservoirs will be discussed. Special attention is given to elevated temperatures that are predominant in the deep subsurface. Microbial reduction of (per)chlorate is a thermodynamically favorable redox process, also at high temperature. However, knowledge about (per)chlorate reduction at elevated temperatures is still scarce and restricted to members of the Firmicutes and the archaeon Archaeoglobus fulgidus. By analyzing the diversity and phylogenetic distribution of functional genes in (meta)genome databases and combining this knowledge with extrapolations to earlier-made physiological observations we speculate on the potential of (per)chlorate reduction in the subsurface and more precisely oil fields. In addition, the application of (per)chlorate for bioremediation, souring control, and microbial enhanced oil recovery are addressed. PMID:25225493

  1. Microbial redox processes in deep subsurface environments and the potential application of (per)chlorate in oil reservoirs

    PubMed Central

    Liebensteiner, Martin G.; Tsesmetzis, Nicolas; Stams, Alfons J. M.; Lomans, Bartholomeus P.

    2014-01-01

    The ability of microorganisms to thrive under oxygen-free conditions in subsurface environments relies on the enzymatic reduction of oxidized elements, such as sulfate, ferric iron, or CO2, coupled to the oxidation of inorganic or organic compounds. A broad phylogenetic and functional diversity of microorganisms from subsurface environments has been described using isolation-based and advanced molecular ecological techniques. The physiological groups reviewed here comprise iron-, manganese-, and nitrate-reducing microorganisms. In the context of recent findings also the potential of chlorate and perchlorate [jointly termed (per)chlorate] reduction in oil reservoirs will be discussed. Special attention is given to elevated temperatures that are predominant in the deep subsurface. Microbial reduction of (per)chlorate is a thermodynamically favorable redox process, also at high temperature. However, knowledge about (per)chlorate reduction at elevated temperatures is still scarce and restricted to members of the Firmicutes and the archaeon Archaeoglobus fulgidus. By analyzing the diversity and phylogenetic distribution of functional genes in (meta)genome databases and combining this knowledge with extrapolations to earlier-made physiological observations we speculate on the potential of (per)chlorate reduction in the subsurface and more precisely oil fields. In addition, the application of (per)chlorate for bioremediation, souring control, and microbial enhanced oil recovery are addressed. PMID:25225493

  2. Calculation of the absolute thermodynamic properties of association of host-guest systems from the intermolecular potential of mean force.

    PubMed

    Ghoufi, Aziz; Malfreyt, Patrice

    2006-12-14

    The authors report calculations of the intermolecular potential of mean force (PMF) in the case of the host-guest interaction. The host-guest system is defined by a water soluble calixarene and a cation. With an organic cation such as the tetramethylammonium cation, the calixarene forms an insertion complex, whereas with the Lanthane cation, the supramolecular assembly is an outer-sphere complex. The authors apply a modified free energy perturbation method and the force constraint technique to establish the PMF profiles as a function of the separation distance between the host and guest. They use the PMF profile for the calculation of the absolute thermodynamic properties of association that they compare to the experimental values previously determined. They finish by giving some structural features of the insertion and outer-sphere complexes at the Gibbs free energy minimum. PMID:17176145

  3. Source Term Modeling for Evaluating the Potential Impacts to Groundwater of Fluids Escaping from a Depleted Oil Reservoir Used for Carbon Sequestration

    SciTech Connect

    Cantrell, Kirk J.; Brown, Christopher F.

    2014-06-13

    In recent years depleted oil reservoirs have received special interest as carbon storage reservoirs because of their potential to offset costs through collaboration with enhanced oil recovery projects. Modeling is currently being conducted to evaluate potential risks to groundwater associated with leakage of fluids from depleted oil reservoirs used for storage of CO2. Modeling results reported here focused on understanding how toxic organic compounds found in oil will distribute between the various phases within a storage reservoir after introduction of CO2, understanding the migration potential of these compounds, and assessing potential groundwater impacts should leakage occur. Two model scenarios were conducted to evaluate how organic components in oil will distribute among the phases of interest (oil, CO2, and brine). The first case consisted of 50 wt.% oil and 50 wt.% water; the second case was 90 wt.% CO2 and 10 wt.% oil. Several key organic compounds were selected for special attention in this study based upon their occurrence in oil at significant concentrations, relative toxicity, or because they can serve as surrogate compounds for other more highly toxic compounds for which required input data are not available. The organic contaminants of interest (COI) selected for this study were benzene, toluene, naphthalene, phenanthrene, and anthracene. Partitioning of organic compounds between crude oil and supercritical CO2 was modeled using the Peng-Robinson equation of state over temperature and pressure conditions that represent the entire subsurface system (from those relevant to deep geologic carbon storage environments to near surface conditions). Results indicate that for a typical set of oil reservoir conditions (75°C, and 21,520 kPa) negligible amounts of the COI dissolve into the aqueous phase. When CO2 is introduced into the reservoir such that the final composition of the reservoir is 90 wt.% CO2 and 10 wt.% oil, a significant fraction of the oil

  4. Wild and synanthropic reservoirs of Leishmania species in the Americas

    PubMed Central

    Roque, André Luiz R.; Jansen, Ana Maria

    2014-01-01

    The definition of a reservoir has changed significantly in the last century, making it necessary to study zoonosis from a broader perspective. One important example is that of Leishmania, zoonotic multi-host parasites maintained by several mammal species in nature. The magnitude of the health problem represented by leishmaniasis combined with the complexity of its epidemiology make it necessary to clarify all of the links in transmission net, including non-human mammalian hosts, to develop effective control strategies. Although some studies have described dozens of species infected with these parasites, only a minority have related their findings to the ecological scenario to indicate a possible role of that host in parasite maintenance and transmission. Currently, it is accepted that a reservoir may be one or a complex of species responsible for maintaining the parasite in nature. A reservoir system should be considered unique on a given spatiotemporal scale. In fact, the transmission of Leishmania species in the wild still represents an complex enzootic “puzzle”, as several links have not been identified. This review presents the mammalian species known to be infected with Leishmania spp. in the Americas, highlighting those that are able to maintain and act as a source of the parasite in nature (and are thus considered potential reservoirs). These host/reservoirs are presented separately in each of seven mammal orders – Marsupialia, Cingulata, Pilosa, Rodentia, Primata, Carnivora, and Chiroptera – responsible for maintaining Leishmania species in the wild. PMID:25426421

  5. Testing new methodologies and assessing their potential for reservoir characterisation: Geoelectrical studies in the Northwest Carboniferous Basin (Ireland).

    NASA Astrophysics Data System (ADS)

    Ogaya, Xènia; Campanyà, Joan; Rath, Volker; Jones, Alan G.; Reay, Derek; Raine, Rob; McConnell, Brian; Ledo, Juanjo

    2016-04-01

    The overarching objective of this study is to improve our methods of characterising saline aquifers by integrating newly acquired electromagnetic data with existing geophysical and geological data. The work presented here is part of an ongoing project to evaluate Ireland's potential for onshore carbon sequestration (IRECCSEM; funded by Science Foundation Ireland). The methodology presented in this characterisation work is not only relevant for studying the potential for onshore carbon sequestration, but is generally applicable for aquifer characterisation, particularly for the evaluation of geothermal resources in appropriate geological settings. We present first results of the three-dimensional (3D) modelling and inversion of the magnetotelluric (MT) data acquired in the Northwest Carboniferous Basin (Ireland) in summer 2015. The electrical resistivity distribution beneath the survey area is constrained using a joint inversion of three different types of electromagnetic data: MT impedance tensor responses (Z), geomagnetic transfer functions (GTF) and inter-station horizontal magnetic transfer-functions (HMT). The preliminary 3D resistivity model obtained reveals the geoelectrical structure of the subsurface, which is translated into parameters relevant to fluid flow. The electromagnetic data were acquired along profiles linking four wells drilled in the area and the available well log data from those wells are used to evaluate some of the existing petrophysical relationships and calibrate them for the study area. This allows us to interpolate the rock physical properties from one well to another well, using the computed geoelectrical model as a reference. The obtained results are compared to available independent geological and geophysical data in order to analyse the validity of this technique, to characterise the uncertainties inherent to our approach, and to assess the potential of this methodology for reservoir characterisation.

  6. A Procedure for Estimating Enrollment and Cost Factors at Potential AFROTC Host-Sites.

    ERIC Educational Resources Information Center

    Alley, William E.; Berberich, George L.

    The development of effectiveness criteria for AFROTC detachments, and relationships between the criteria and various environmental and program characteristics are described. The objective of the study is the development of a method for estimating student enrollments and total operating costs at perspective host-site institutions by using…

  7. Asynchronous development of Honey Bee host and Varroa destructor (Mesostigmata: Varroidae) influences reproductive potential of mites

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A high proportion of non-reproductive (NR) Varroa destructor, is commonly observed in honey bee colonies displaying the Varroa sensitive hygienic trait (VSH). These studies were conducted to determine the influence of brood removal and subsequent host re-invasion of Varroa mites on mite reproduction...

  8. Host status and damage potential of Paratrichodorus renifer and Pratylenchus penetrans (Nematoda) to blueberry (Vaccinium spp.)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Stubby root nematodes (Paratrichodorus species) and root lesion nematodes (Pratylenchus species) have been associated with blueberry in most blueberry-growing regions of North America. Relatively little is known, however, of the host status and pathogenicity of these nematodes to blueberry. We per...

  9. Does phylogeny explain the host choice behaviour of potential biological control agents for Brassicaceae weeds?

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Four invasive Brassicaceae are currently being studied for biological control at the CABI Centre in Switzerland. A phylogenetic approach to host testing has so far been hampered by the fact that the evolutionary relationships of taxa within the Brassicaceae were unclear. Recently, a new phylogeny of...

  10. The potential for cereal rye cover crops to host corn seedling pathogens

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Cover cropping is a prevalent conservation practice that offers substantial benefits to soil health and water quality. However, winter cereal cover crops preceding corn may diminish beneficial rotation effects by growing two grass species in succession. Here, we show that rye cover crops host pathog...

  11. Infection Potential of Hairy Nightshade By Phytophthora infestans and Epidemiological Implications of the Alternate Host

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Hairy nightshade (Solanum sarrachoides Sendt) is a common weed in the potato agro-ecosystem that can serve as an alternate host for late blight. The epidemiological significance of hairy nightshade to potato late blight has not been documented. Infection rates of P. infestans on potato and hairy nig...

  12. SHIGA TOXIN BACTERIOPHAGE INSERTION SITES IDENTIFY DIVERSE ESCHERIHICA COLI O157:H7 STRAIN TYPES WITH DISTRIBUTIONS BIASED TO THE BOVINE HOST RESERVOIR

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Background: The incidence of human disease caused by E. coli O157:H7 is surprisingly low considering its ubiquitous distribution (and frequently, high prevalence) in the bovine reservoir and its low infectious dose for humans. The purpose of this study was to detect E. coli O157:H7 strain types in t...

  13. Geology, reservoir engineering and methane hydrate potential of the Walakpa Gas Field, North Slope, Alaska. Final report

    SciTech Connect

    Glenn, R.K.; Allen, W.W.

    1992-12-01

    The Walakpa Gas Field, located near the city of Barrow on Alaska`s North Slope, has been proven to be methane-bearing at depths of 2000--2550 feet below sea level. The producing formation is a laterally continuous, south-dipping, Lower Cretaceous shelf sandstone. The updip extent of the reservoir has not been determined by drilling, but probably extends to at least 1900 feet below sea level. Reservoir temperatures in the updip portion of the reservoir may be low enough to allow the presence of in situ methane hydrates. Reservoir net pay however, decreases to the north. Depths to the base of permafrost in the area average 940 feet. Drilling techniques and production configuration in the Walakpa field were designed to minimize formation damage to the reservoir sandstone and to eliminate methane hydrates formed during production. Drilling development of the Walakpa field was a sequential updip and lateral stepout from a previously drilled, structurally lower confirmation well. Reservoir temperature, pressure, and gas chemistry data from the development wells confirm that they have been drilled in the free-methane portion of the reservoir. Future studies in the Walakpa field are planned to determine whether or not a component of the methane production is due to the dissociation of updip in situ hydrates.

  14. The spatial distribution, accumulation and potential source of seldom monitored trace elements in sediments of Three Gorges Reservoir, China

    NASA Astrophysics Data System (ADS)

    Han, Lanfang; Gao, Bo; Zhou, Huaidong; Xu, Dongyu; Wei, Xin; Gao, Li

    2015-11-01

    The alteration of hydrologic condition of Three Gorges Reservoir (TGR) after impoundment has caused numerous environmental changes. This study investigated the distribution, accumulation and potential sources of the seldom monitored trace elements (SMTEs) in sediments from three tributaries (ZY, MX and CT) and one mainstream (CJ) in TGR during different seasons. The average contents of most SMTEs excluding Sb in the winter were similar to that in the summer. For Sb, its average concentrations in the summer and winter were roughly six and three times higher than its background value, respectively. Contamination factor (CF) and geoaccumulation index (Igeo) demonstrated that most of the sediments were obviously contaminated by Sb. The enrichment factors (EF) of Ga and Sb were higher than 2.0, revealing the possible anthropogenic inputs; However, the EFs of other SMTEs were lower than 1.5, indicating the natural inputs. Correlation and principal component analysis suggested the most SMTEs were positively correlated with major elements (Cr, Mn, Cu, Zn, As, Cd and Pb) and clay contents, which implies that SMTEs had the same sources with these major metals, and the fine particles might be a major carrier for transporting SMTEs from the rivers to the TGR.

  15. The spatial distribution, accumulation and potential source of seldom monitored trace elements in sediments of Three Gorges Reservoir, China

    PubMed Central

    Han, Lanfang; Gao, Bo; Zhou, Huaidong; Xu, Dongyu; Wei, Xin; Gao, Li

    2015-01-01

    The alteration of hydrologic condition of Three Gorges Reservoir (TGR) after impoundment has caused numerous environmental changes. This study investigated the distribution, accumulation and potential sources of the seldom monitored trace elements (SMTEs) in sediments from three tributaries (ZY, MX and CT) and one mainstream (CJ) in TGR during different seasons. The average contents of most SMTEs excluding Sb in the winter were similar to that in the summer. For Sb, its average concentrations in the summer and winter were roughly six and three times higher than its background value, respectively. Contamination factor (CF) and geoaccumulation index (Igeo) demonstrated that most of the sediments were obviously contaminated by Sb. The enrichment factors (EF) of Ga and Sb were higher than 2.0, revealing the possible anthropogenic inputs; However, the EFs of other SMTEs were lower than 1.5, indicating the natural inputs. Correlation and principal component analysis suggested the most SMTEs were positively correlated with major elements (Cr, Mn, Cu, Zn, As, Cd and Pb) and clay contents, which implies that SMTEs had the same sources with these major metals, and the fine particles might be a major carrier for transporting SMTEs from the rivers to the TGR. PMID:26538153

  16. The spatial distribution, accumulation and potential source of seldom monitored trace elements in sediments of Three Gorges Reservoir, China.

    PubMed

    Han, Lanfang; Gao, Bo; Zhou, Huaidong; Xu, Dongyu; Wei, Xin; Gao, Li

    2015-01-01

    The alteration of hydrologic condition of Three Gorges Reservoir (TGR) after impoundment has caused numerous environmental changes. This study investigated the distribution, accumulation and potential sources of the seldom monitored trace elements (SMTEs) in sediments from three tributaries (ZY, MX and CT) and one mainstream (CJ) in TGR during different seasons. The average contents of most SMTEs excluding Sb in the winter were similar to that in the summer. For Sb, its average concentrations in the summer and winter were roughly six and three times higher than its background value, respectively. Contamination factor (CF) and geoaccumulation index (Igeo) demonstrated that most of the sediments were obviously contaminated by Sb. The enrichment factors (EF) of Ga and Sb were higher than 2.0, revealing the possible anthropogenic inputs; However, the EFs of other SMTEs were lower than 1.5, indicating the natural inputs. Correlation and principal component analysis suggested the most SMTEs were positively correlated with major elements (Cr, Mn, Cu, Zn, As, Cd and Pb) and clay contents, which implies that SMTEs had the same sources with these major metals, and the fine particles might be a major carrier for transporting SMTEs from the rivers to the TGR. PMID:26538153

  17. Effect of endophytic Bacillus cereus ERBP inoculation into non-native host: Potentials and challenges for airborne formaldehyde removal.

    PubMed

    Khaksar, Gholamreza; Treesubsuntorn, Chairat; Thiravetyan, Paitip

    2016-10-01

    Phytoremediation could be a cost-effective, environmentally friendly approach for the treatment of indoor air. However, some drawbacks still dispute the expediency of phytotechnology. Our objectives were to investigate the competency of plant growth-promoting (PGP) endophytic Bacillus cereus ERBP (endophyte root blue pea), isolated from the root of Clitoria ternatea, to colonize and stabilize within Zamioculcas zamiifolia and Euphorbia milii as non-native hosts without causing any disease or stress symptoms. Moreover, the impact of B. cereus ERBP on the natural shoot endophytic community and for the airborne formaldehyde removal capability of non-native hosts was assessed. Non-native Z. zamiifolia was effectively inoculated with B. cereus ERBP through soil as the most efficient method of endophyte inoculation. Denaturing gradient gel electrophoresis profiling of the shoot endophytic community verified the colonization and stability of B. cereus ERBP within its non-native host during a 20-d fumigation period without interfering with the natural shoot endophytic diversity of Z. zamiifolia. B. cereus ERBP conferred full protection to its non-native host against formaldehyde phytotoxicity and enhanced airborne formaldehyde removal of Z. zamiifolia whereas non-inoculated plants suffered from formaldehyde phytotoxicity because their natural shoot endophytic community was detrimentally affected by formaldehyde. In contrast, B. cereus ERBP inoculation into non-native E. milii deteriorated airborne formaldehyde removal of the non-native host (compared to a non-inoculated one) as B. cereus ERBP interfered with natural shoot endophytic community of E. milii, which caused stress symptoms and stimulated ethylene biosynthesis. Non-native host inoculation with PGP B. cereus ERBP could bear potentials and challenges for airborne formaldehyde removal. PMID:27362296

  18. Influence of Land Use and Watershed Characteristics on Protozoa Contamination in a Potential Drinking Water Resources Reservoir

    EPA Science Inventory

    Relative changes in the microbial quality of Lake Texoma, on the border of Texas and Oklahoma, were investigated by monitoring protozoan pathogens, fecal indicators, and factors influencing the intensity of the microbiological contamination of surface water reservoirs. The waters...

  19. Sequestration of host-CD59 as potential immune evasion strategy of Trichomonas vaginalis.

    PubMed

    Ibáñez-Escribano, Alexandra; Nogal-Ruiz, Juan José; Pérez-Serrano, Jorge; Gómez-Barrio, Alicia; Escario, J Antonio; Alderete, J F

    2015-09-01

    Trichomonas vaginalis is known to evade complement-mediated lysis. Because the genome of T. vaginalis does not possess DNA sequence with homology to human protectin (CD59), a complement lysis restricting factor, we tested the hypothesis that host CD59 acquisition by T. vaginalis organisms mediates resistance to complement killing. This hypothesis was based on the fact that trichomonads are known to associate with host proteins. No CD59 was detected on the surface of T. vaginalis grown in serum-based medium using as probe anti-CD59 monoclonal antibody (MAb). We, therefore, infected mice intraperitoneally with live T. vaginalis, and trichomonads harvested from ascites were tested for binding of CD59. Immunofluorescence showed that parasites had surface CD59. Furthermore, as mouse erythrocytes (RBCs) possess membrane-associated CD59, and trichomonads use RBCs as a nutrient source, organisms were co-cultured with murine RBCs for one week. Parasites were shown to have detectable surface CD59. Importantly, live T. vaginalis with bound CD59 were compared with batch-grown parasites without surface-associated CD59 for sensitivity to complement in human serum. Trichomonads without surface-bound CD59 had a higher level of killing by complement than did parasites with surface CD59. These data show that host CD59 acquired onto the surface by live T. vaginalis may be an alternative mechanism for complement evasion. We describe a novel strategy by T. vaginalis consistent with host protein procurement by this parasite to evade the lytic action of complement. PMID:25976413

  20. Fluid flow and assessment of the leakage potential in the Snohvit reservoir and overburden in the Barents Sea

    NASA Astrophysics Data System (ADS)

    Tasianas, A.

    2012-12-01

    Department of Geology, University of Tromsø, Dramsveien 201, 9037 Tromsø, Norway Abstract ____________________________________________________________________________ The Snøhvit reservoir and overburden have been an important location for testing Carbon Capture and Storage (CCS) techniques. Fluid flow in the region is caused mainly by repeated glacial cycles and differential geographic uplift, which caused tilting and spilling of various structural traps in the area. Geological modeling, undertaken as part of the ECO2 project activities, has allowed to model the local stratigraphy and any potential fluid flow pathways in order to determine how effective CCS would be in the area. 3D seismic data related to cube ST0306 from the Hammerfest Sedimentary Basin (HFB), covering the Snohvit and Albatross fields, were used to better understand the pathways and mechanisms related to fluid flow in the area and thus propose also potential leakage scenarios. The inclusion of geological features such as gas chimneys, faults, wells, pockmarks at the seabed and vertical fluid flow structures underlying the pockmarks in the models has also allowed to accurately simulate fluid flow through realistic geological models. Leaking of CO2 from the Tubåen Formation (Fm) can partially migrate upwards to the Hekkingen Fm or less deep formations via the faults. If leaking reaches the tertiary faults, CO2 can migrate through the Top kvitting Fm and maybe continue via pipe structures, faults or the clinoforms of the Torsk Fm and accumulate under the Upper Regional Unconformity (URU). The presence of pockmarks at the seabed could indicate further leakage between the URU and the seabed via vertical fluid flow structures underlying the pockmarks. Depending on the leakage mode, models of different types of domain size and grid resolution were created and populated with properties such as porosity (SPhi), vertical permeability (kv), horizontal permeability (Kh), anisotropy ratio (AnIso), Total

  1. Natural history of Zoonotic Babesia: Role of wildlife reservoirs

    PubMed Central

    Yabsley, Michael J.; Shock, Barbara C.

    2012-01-01

    Babesiosis is an emerging zoonotic disease on all inhabited continents and various wildlife species are the principal reservoir hosts for zoonotic Babesia species. The primary vectors of Babesia are Ixodid ticks, with the majority of zoonotic species being transmitted by species in the genus Ixodes. Species of Babesia vary in their infectivity, virulence and pathogenicity for people. Various factors (e.g., increased interactions between people and the environment, increased immunosuppression, changes in landscape and climate, and shifts in host and vector species abundance and community structures) have led to an increase in tick-borne diseases in people, including babesiosis. Furthermore, because babesiosis is now a reportable disease in several states in the United States, and it is the most common blood transfusion-associated parasite, recognized infections are expected to increase. Because of the zoonotic nature of these parasites, it is essential that we understand the natural history (especially reservoirs and vectors) so that appropriate control and prevention measures can be implemented. Considerable work has been conducted on the ecology of Babesia microti and Babesia divergens, the two most common causes of babesiosis in the United States and Europe, respectively. However, unfortunately, for many of the zoonotic Babesia species, the reservoir(s) and/or tick vector(s) are unknown. We review the current knowledge regarding the ecology of Babesia among their reservoir and tick hosts with an emphasis of the role on wildlife as reservoirs. We hope to encourage the molecular characterization of Babesia from potential reservoirs and vectors as well from people. These data are necessary so that informed decisions can be made regarding potential vectors and the potential role of wildlife in the ecology of a novel Babesia when it is detected in a human patient. PMID:24533312

  2. Propionibacterium acnes CAMP Factor and Host Acid Sphingomyelinase Contribute to Bacterial Virulence: Potential Targets for Inflammatory Acne Treatment

    PubMed Central

    Nakatsuji, Teruaki; Tang, De-chu C.; Zhang, Liangfang; Gallo, Richard L.; Huang, Chun-Ming

    2011-01-01

    Background In the progression of acne vulgaris, the disruption of follicular epithelia by an over-growth of Propionibacterium acnes (P. acnes) permits the bacteria to spread and become in contact with various skin and immune cells. Methodology/Principal Findings We have demonstrated in the present study that the Christie, Atkins, Munch-Peterson (CAMP) factor of P. acnes is a secretory protein with co-hemolytic activity with sphingomyelinase that can confer cytotoxicity to HaCaT keratinocytes and RAW264.7 macrophages. The CAMP factor from bacteria and acid sphingomyelinase (ASMase) from the host cells were simultaneously present in the culture supernatant only when the cells were co-cultured with P. acnes. Either anti-CAMP factor serum or desipramine, a selective ASMase inhibitor, significantly abrogated the P. acnes-induced cell death of HaCaT and RAW264.7 cells. Intradermal injection of ICR mouse ears with live P. acnes induced considerable ear inflammation, macrophage infiltration, and an increase in cellular soluble ASMase. Suppression of ASMase by systemic treatment with desipramine significantly reduced inflammatory reaction induced by intradermal injection with P. acnes, suggesting the contribution of host ASMase in P. acnes-induced inflammatory reaction in vivo. Vaccination of mice with CAMP factor elicited a protective immunity against P. acnes-induced ear inflammation, indicating the involvement of CAMP factor in P. acnes-induced inflammation. Most notably, suppression of both bacterial CAMP factor and host ASMase using vaccination and specific antibody injection, respectively, cooperatively alleviated P. acnes-induced inflammation. Conclusions/Significance These findings envision a novel infectious mechanism by which P. acnes CAMP factor may hijack host ASMase to amplify bacterial virulence to degrade and invade host cells. This work has identified both CAMP factor and ASMase as potential molecular targets for the development of drugs and vaccines against

  3. Emerging Roles of the Host Defense Peptide LL-37 in Human Cancer and its Potential Therapeutic Applications

    PubMed Central

    Wu, William K.K.; Wang, Guangshun; Coffelt, Seth B.; Betancourt, Aline M.; Lee, Chung W.; Fan, Daiming; Wu, Kaichun; Yu, Jun; Sung, Joseph J.Y.; Cho, Chi H.

    2010-01-01

    Human cathelicidin LL-37, a host defense peptide derived from leukocytes and epithelial cells, plays a crucial role in innate and adaptive immunity. Not only does it eliminate pathogenic microbes directly, LL-37 also modulates host immune responses. Emerging evidence from tumor biology studies indicates that LL-37 plays a prominent and complex role in carcinogenesis. While overexpression of LL-37 has been implicated in the development or progression of many human malignancies, including breast, ovarian and lung cancers, LL-37 suppresses tumorigenesis in gastric cancer. These data are beginning to unveil the intricate and contradictory functions of LL-37. The reasons for the tissue-specific function of LL-37 in carcinogenesis remain to be elucidated. Here, we review the relationship between LL-37, its fragments and cancer progression as well as discuss the potential therapeutic implications of targeting this peptide. PMID:20521250

  4. Emerging roles of the host defense peptide LL-37 in human cancer and its potential therapeutic applications.

    PubMed

    Wu, William K K; Wang, Guangshun; Coffelt, Seth B; Betancourt, Aline M; Lee, Chung W; Fan, Daiming; Wu, Kaichun; Yu, Jun; Sung, Joseph J Y; Cho, Chi H

    2010-10-15

    Human cathelicidin LL-37, a host defense peptide derived from leukocytes and epithelial cells, plays a crucial role in innate and adaptive immunity. Not only does LL-37 eliminate pathogenic microbes directly but also modulates host immune responses. Emerging evidence from tumor biology studies indicates that LL-37 plays a prominent and complex role in carcinogenesis. Although overexpression of LL-37 has been implicated in the development or progression of many human malignancies, including breast, ovarian and lung cancers, LL-37 suppresses tumorigenesis in gastric cancer. These data are beginning to unveil the intricate and contradictory functions of LL-37. The reasons for the tissue-specific function of LL-37 in carcinogenesis remain to be elucidated. Here, we review the relationship between LL-37, its fragments and cancer progression as well as discuss the potential therapeutic implications of targeting this peptide. PMID:20521250

  5. Exploring the Pharmacological Potential of Promiscuous Host-Defense Peptides: From Natural Screenings to Biotechnological Applications

    PubMed Central

    Silva, Osmar N.; Mulder, Kelly C. L.; Barbosa, Aulus E. A. D.; Otero-Gonzalez, Anselmo J.; Lopez-Abarrategui, Carlos; Rezende, Taia M. B.; Dias, Simoni C.; Franco, Octávio L.

    2011-01-01

    In the last few years, the number of bacteria with enhanced resistance to conventional antibiotics has dramatically increased. Most of such bacteria belong to regular microbial flora, becoming a real challenge, especially for immune-depressed patients. Since the treatment is sometimes extremely expensive, and in some circumstances completely inefficient for the most severe cases, researchers are still determined to discover novel compounds. Among them, host-defense peptides (HDPs) have been found as the first natural barrier against microorganisms in nearly all living groups. This molecular class has been gaining attention every day for multiple reasons. For decades, it was believed that these defense peptides had been involved only with the permeation of the lipid bilayer in pathogen membranes, their main target. Currently, it is known that these peptides can bind to numerous targets, as well as lipids including proteins and carbohydrates, from the surface to deep within the cell. Moreover, by using in vivo models, it was shown that HDPs could act both in pathogens and cognate hosts, improving immunological functions as well as acting through multiple pathways to control infections. This review focuses on structural and functional properties of HDP peptides and the additional strategies used to select them. Furthermore, strategies to avoid problems in large-scale manufacture by using molecular and biochemical techniques will also be explored. In summary, this review intends to construct a bridge between academic research and pharmaceutical industry, providing novel insights into the utilization of HDPs against resistant bacterial strains that cause infections in humans. PMID:22125552

  6. Characteristics of a fault zone in Triassic Lower Bunter as an outcrop analogue of a potential geothermal reservoir of the Upper Rhine Graben.

    NASA Astrophysics Data System (ADS)

    Bauer, Johanna F.; Meier, Silke; Philipp, Sonja L.

    2014-05-01

    rebound hardness, or the compressive strength, respectively, decreases near the fault core. The core zone can be divided into a central and a distal part with different deformation characteristics. The distal part combines characteristics from the central core zone and the damage zone and contains the highest fracture frequency. But since there occur also deformation bands the permeability is presumably lower than in the damage zone. In contrast, the most common features in the central fault core are slip surfaces, deformation bands and host rock lenses. We conclude that damage zones in Triassic sandstones may increase fluid flow and are potential drilling targets for geothermal projects. Because the fracture connectivity is low hydraulic stimulations may be needed to get a hydraulically active fracture network. This project is part of the Research and Development Project AuGE (Outcrop Analogue Studies in Geothermal Exploration). Project partners are the companies Geothermal Engineering GmbH and GeoEnergy GmbH as well as the Universities of Heidelberg and Erlangen. The project is funded by the German Federal Ministry for the Environment, Nature Conservation and Nuclear Safety (BMU) within the framework of the 5th Energy Research Program (FKZ 0325302).

  7. Stress and strain around a multiply reactivated deep-seated fault zone and its impact on a potential geothermal reservoir - The Freiburg-Bonndorf-Bodensee fault zone

    NASA Astrophysics Data System (ADS)

    Egli, Daniel; Madritsch, Herfried; Ibele, Tobias; Mosar, Jon; Vietor, Tim

    2014-05-01

    The Swiss and German Molasse Basin is generally of high geo-economical interest as it is considered to host potential reservoirs for natural gas and geothermal energy production, as well as sites for radioactive waste disposal and CO2 storage. Its successful exploration and eventually exploitation requires detailed understanding of its deep underground in particular its structural characteristics. Information of the rocks underlying the up to km thick Molasse sediments is mainly available from drillhole and seismic data. Outcrops of Mesozoic and Paleozoic sediments as well as the crystalline basement that could provide additional information on structural geological characteristics are very rare and mostly restricted to the borders of the basin. This study focuses on the eastern part of the Freiburg-Bonndorf-Bodensee Fault Zone (FBBFZ; e.g. Paul 1948, Carlé 1955), a roughly 100 km long fault system, which runs approximately from the Kaiserstuhl in the Upper Rhein Graben across the Black Forest Massif to the Lake Constance. Its extensive present day surface trace allows to study the fault zone as it cuts through a wide range of lithologies from the Variscan basement of the Black Forest to the Tertiary sediments of the Molasse west of Lake Constance. As such, it can serve as natural analogue for the characterization of fault structures in the subsurface of the Molasse Basin. The Randen Fault is a well-exposed NW-SE trending fault segment of the FBBFZ, situated in NE Switzerland and SW Germany. In the field, as well as in seismic sections the structure shows the characteristics of a normal fault but there are indications for a dextral transcurrent overprint. We presents a kinematic analysis of outcrop scale fracture systems collected along the various segments of the FBBFZ with a focus on the Randen Fault segment. The results indicate a perturbation of the regional fracture characteristics and the paleostress pattern in the vicinity of the fault zone. A recently

  8. Life History and Demographic Drivers of Reservoir Competence for Three Tick-Borne Zoonotic Pathogens

    PubMed Central

    Ostfeld, Richard S.; Levi, Taal; Jolles, Anna E.; Martin, Lynn B.; Hosseini, Parviez R.; Keesing, Felicia

    2014-01-01

    Animal and plant species differ dramatically in their quality as hosts for multi-host pathogens, but the causes of this variation are poorly understood. A group of small mammals, including small rodents and shrews, are among the most competent natural reservoirs for three tick-borne zoonotic pathogens, Borrelia burgdorferi, Babesia microti, and Anaplasma phagocytophilum, in eastern North America. For a group of nine commonly-infected mammals spanning >2 orders of magnitude in body mass, we asked whether life history features or surrogates for (unknown) encounter rates with ticks, predicted reservoir competence for each pathogen. Life history features associated with a fast pace of life generally were positively correlated with reservoir competence. However, a model comparison approach revealed that host population density, as a proxy for encounter rates between hosts and pathogens, generally received more support than did life history features. The specific life history features and the importance of host population density differed somewhat between the different pathogens. We interpret these results as supporting two alternative but non-exclusive hypotheses for why ecologically widespread, synanthropic species are often the most competent reservoirs for multi-host pathogens. First, multi-host pathogens might adapt to those hosts they are most likely to experience, which are likely to be the most abundant and/or frequently bitten by tick vectors. Second, species with fast life histories might allocate less to certain immune defenses, which could increase their reservoir competence. Results suggest that of the host species that might potentially be exposed, those with comparatively high population densities, small bodies, and fast pace of life will often be keystone reservoirs that should be targeted for surveillance or management. PMID:25232722

  9. The evolution of sexual dimorphism and its potential impact on host-pathogen coevolution.

    PubMed

    Gipson, Stephen A Y; Hall, Matthew D

    2016-05-01

    Sex and infection are intimately linked. Many diseases are spread by sexual contact, males are thought to evolve exaggerated sexual signals to demonstrate their immune robustness, and pathogens have been shown to direct the evolution of recombination. In all of these examples, infection is influencing the evolution of male and female fitness, but less is known about how sex differences influence pathogen fitness. A defining characteristic of sexual dimorphism is not only divergent phenotypes, but also a complex genetic architecture involving changes in genetic correlations among shared fitness traits, and differences in the accumulation of mutations-all of which may affect selection on an invading pathogen. Here, we outline the implications that the genetics of sexual dimorphism can have for host-pathogen coevolution and argue that male-female differences influence more than just the environment that a pathogen experiences. PMID:27076194

  10. Independence of Anaplasma marginale Strains with High and Low Transmission Efficiencies in the Tick Vector following Simultaneous Acquisition by Feeding on a Superinfected Mammalian Reservoir Host

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Strain superinfection occurs when a second pathogen strain infects a host already carrying a primary strain. Anaplasma marginale superinfection occurs when the second strain encodes a unique variant surface repertoire as compared to the primary strain and the epidemiologic consequences depend on th...

  11. Independence of anaplasma marginale strains with high and low transmission efficiencies in the tick vector following simultaneous acquisition by feeding on a superinfected mammalian reservoir host

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Strain superinfection occurs when a second pathogen strain infects a host already carrying a primary strain. Anaplasma marginale superinfection occurs when the second strain carries a variant repertoire different from that of the primary strain, and the epidemiologic consequences depend on the relat...

  12. ASSESSING THE POTENTIAL EFFECTS OF FUNGICIDES ON NONTARGET GUT FUNGI (TRICHOMYCETES) AND THEIR ASSOCIATED LARVAL BLACK FLY HOSTS

    PubMed Central

    Wilson, Emma R.; Smalling, Kelly L.; Reilly, Timothy J.; Gray, Elmer; Bond, Laura; Steele, Lance; Kandel, Prasanna; Chamberlin, Alison; Gause, Justin; Reynolds, Nicole; Robertson, Ian; Novak, Stephen; Feris, Kevin; White, Merlin M.

    2015-01-01

    Fungicides are moderately hydrophobic and have been detected in water and sediment, particularly in agricultural watersheds, but typically are not included in routine water quality monitoring efforts. This is despite their widespread use and frequent application to combat fungal pathogens. Whereas the efficacy of these compounds on fungal pathogens is well documented, little is known about their effects on nontarget fungi. This pilot study, a field survey in southwestern Idaho from April to December 2010 on four streams with varying pesticide inputs (two agricultural and two reference sites), was conducted to assess nontarget impact of fungicides on gut fungi, or trichomycetes. Tissues of larval black flies (Diptera: Simuliidae), hosts of gut fungi, were analyzed for pesticide accumulation. Fungicides were detected in hosts from streams within agricultural watersheds but were not detected in hosts from reference streams. Gut fungi from agricultural sites exhibited decreased percent infestation, density within the gut, and sporulation, and black fly tissues had elevated pesticide concentrations. Differences observed between the sites demonstrate a potential effect on this symbiotic system. Future research is needed to parse out the details of the complex biotic and abiotic relationships; however, these preliminary results indicate that impacts to nontarget organisms could have far-reaching consequences within aquatic ecosystems. PMID:26380545

  13. Kingdom-Wide Analysis of Fungal Small Secreted Proteins (SSPs) Reveals their Potential Role in Host Association

    PubMed Central

    Kim, Ki-Tae; Jeon, Jongbum; Choi, Jaeyoung; Cheong, Kyeongchae; Song, Hyeunjeong; Choi, Gobong; Kang, Seogchan; Lee, Yong-Hwan

    2016-01-01

    Fungal secretome consists of various functional groups of proteins, many of which participate in nutrient acquisition, self-protection, or manipulation of the environment and neighboring organisms. The least characterized component of the secretome is small secreted proteins (SSPs). Some SSPs have been reported to function as effectors, but most remain to be characterized. The composition of major secretome components, such as carbohydrate-active enzymes, proteases, lipases, and oxidoreductases, appear to reflect the lifestyle and ecological niche of individual species. We hypothesize that many SSPs participate in manipulating plants as effectors. Obligate biotrophs likely encode more and diverse effector-like SSPs to suppress host defense compared to necrotrophs, which generally use cell wall degrading enzymes and phytotoxins to kill hosts. Because different secretome prediction workflows have been used in different studies, available secretome data are difficult to integrate for comprehensive comparative studies to test this hypothesis. In this study, SSPs encoded by 136 fungal species were identified from data archived in Fungal Secretome Database (FSD) via a refined secretome workflow. Subsequently, compositions of SSPs and other secretome components were compared in light of taxa and lifestyles. Those species that are intimately associated with host cells, such as biotrophs and symbionts, usually have higher proportion of species-specific SSPs (SSSPs) than hemibiotrophs and necrotrophs, but the latter groups displayed higher proportions of secreted enzymes. Results from our study established a foundation for functional studies on SSPs and will also help understand genomic changes potentially underpinning different fungal lifestyles. PMID:26925088

  14. Assessing the potential effects of fungicides on nontarget gut fungi (trichomycetes) and their associated larval black fly hosts

    USGS Publications Warehouse

    Wilson, Emma R.; Smalling, Kelly L.; Reilly, Timothy J.; Gray, Elmer; Bond, Laura; Steele, Lance; Kandel, Prasanna; Chamberlin, Alison; Gause, Justin; Reynolds, Nicole; Robertson, Ian; Novak, Stephen; Feris, Kevin; White, Merlin M.

    2014-01-01

    Fungicides are moderately hydrophobic and have been detected in water and sediment, particularly in agricultural watersheds, but typically are not included in routine water quality monitoring efforts. This is despite their widespread use and frequent application to combat fungal pathogens. Although the efficacy of these compounds on fungal pathogens is well documented, little is known about their effects on nontarget fungi. This pilot study, a field survey in southwestern Idaho from April to December 2010 on four streams with varying pesticide inputs (two agricultural and two reference sites), was conducted to assess nontarget impact of fungicides on gut fungi, or trichomycetes. Tissues of larval black flies (Diptera: Simuliidae), hosts of gut fungi, were analyzed for pesticide accumulation. Fungicides were detected in hosts from streams within agricultural watersheds but were not detected in hosts from reference streams. Gut fungi from agricultural sites exhibited decreased percent infestation, density and sporulation within the gut, and black fly tissues had elevated pesticide concentrations. Differences observed between the sites demonstrate a potential effect on this symbiotic system. Future research is needed to parse out the details of the complex biotic and abiotic relationships; however, these preliminary results indicate that impacts to nontarget organisms could have far-reaching consequences within aquatic ecosystems.

  15. [Trematode distribution in Littorina saxatilis populations can support the reproductive potential of the host: "toilers" and "idlers" among female periwinkles].

    PubMed

    Granovich, A I; Iagunova, E B; Sokolova, I M

    2012-01-01

    mechanism, in combination with the previously described elevated individual fecundity of females in heavily infested populations, may compensate for the parasite-induced decrease in the reproductive potential of the host population and ensure the stability of the host-parasite system. PMID:23458020

  16. The potential for water hyacinth to improve the quality of Bogota River water in the Muña Reservoir: comparison with the performance of waste stabilization ponds.

    PubMed

    Giraldo, E; Garzón, A

    2002-01-01

    The potential application of Water Hyacinth (Eichhornia crassipes) in organic matter degradation, sedimentation, nutrient and heavy metal absorption and sulfur reduction in the Muña Reservoir has been tested in experimental lagoons. The lagoons were operated at hydraulic retention times (HRT) of 6, 9 and 15 days. One lagoon was covered with Water Hyacinth, which is naturally growing in the Muña Reservoir, while another lagoon was operated as a conventional oxidation pond. The Water Hyacinth lagoon had better removal efficiencies for almost all parameters measured: BOD5, total suspended solids, COD, nitrogen, phosphorus and heavy metals. The oxidation lagoon was facultative for HRT of 9 and 15 days, and anoxic when operated at 6 days HRT. At HRT of 15 days the water quality in the effluent of the covered lagoon corresponded to 12 mg/l of BOD, 6 mg/l of suspended solids and 0.8 mg/l of hydrogen sulfide. Hydrogen sulfide levels in the Muña reservoir can be substantially reduced at HRT higher than 15 days in both lagoons. The uncovered lagoon had better hydrogen sulfide removal during the day but presents high levels at night. If the hydraulic retention time in the Muña reservoir is increased, the water quality of the Bogota river can be substantially improved for all the HRTs tested in the pilot units. HRT seems to give a better prediction of overall effluent water quality than surface loading. More research is needed in order to define the optimum water hyacinth density in the Muña reservoir to determine its influence on the water quality of the effluent. The influence is expected to be negative due to an internal increase of BOD, solids, nutrients and metals loads due to plant decay. PMID:11833723

  17. Merwinite-structured phases as a potential host of alkalis in the upper mantle

    NASA Astrophysics Data System (ADS)

    Bindi, Luca; Safonov, Oleg G.; Zedgenizov, Dmitriy A.

    2015-08-01

    Two previously unknown Na- and K-rich phases were synthesized near the solidus of the model CMAS lherzolite interacted with the CaCO3 + Na2CO3 + KCl melt at 7 GPa. They coexist with forsterite, garnet and chloride-carbonate melt. Stoichiometry and unit-cell parameters measured by means of powder diffraction indicate that one of the phases corresponds to (K,Na)2Ca4Mg2Si4O15 (with about 0.1 a.p.f.u. Al). Although single-crystal X-ray measurements of this phase did not allow the solution of the crystal structure, we suggest that the structure of this phase includes mixed SiO4 and Si2O7 units. Single-crystal diffraction experiments of the other alkali-rich phase with composition (Ca2.06Na0.86K0.08)Σ=3.00(Mg0.53Si0.45Al0.03)Σ=1.01Si2.00O8 showed that it exhibits the merwinite structure, space group P21/ a, with lattice parameters a = 12.987(2), b = 5.101(1), c = 9.130(2) Å, β = 92.36(1)°, V = 604.3(2) Å3, and Z = 4. The structure was refined to R 1 = 0.031 using 2619 independent reflections. In the structure, Na is hosted at the large Ca sites, whereas Si replaces Mg at the octahedral site and occurs in the usual tetrahedral coordination. Ordering-induced distortion provokes a change in coordination of the (Ca, Na) atoms with respect to pure merwinite. Merwinite phases with lower K + Na contents (0.08-0.18 a.p.f.u.) coexist with forsterite, clinopyroxene and immiscible carbonate-chloride and silicate melts at higher temperatures (up to 1510 °C) at 7 and 5.5 GPa. These phases (including alkali-rich ones at solidus) show a general formula [Ca3-2 x (Na,K)2 x ][Mg1- x Si x ]Si2O8 (with x up to 0.45), where the Na + K content negatively correlates with Ca and positively correlates with Si. The present experimental and crystal-chemical data prove that merwinite-structured phases may be efficient hosts for alkalis in the upper mantle. They are mineralogical indicators of either the interaction of mantle peridotites with alkaline carbonatitic liquids or high

  18. Fulfillment of Koch’s postulates and partial host range of Septoria lepidii Desm., a fungal pathogen for potential biological control of hoary cress (Lepidium spp.)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We have fulfilled Koch’s postulates and conducted host range tests with Septoria lepidii Desm. on five geographical accessions of hoary cress. Host range results showed the fungus specific to Lepidium spp. and damaging to hoary cress. This fungus is potentially an important biological control agent ...

  19. Human heme oxygenase 1 is a potential host cell factor against dengue virus replication

    PubMed Central

    Tseng, Chin-Kai; Lin, Chun-Kuang; Wu, Yu-Hsuan; Chen, Yen-Hsu; Chen, Wei-Chun; Young, Kung-Chia; Lee, Jin-Ching

    2016-01-01

    Dengue virus (DENV) infection and replication induces oxidative stress, which further contributes to the progression and pathogenesis of the DENV infection. Modulation of host antioxidant molecules may be a useful strategy for interfering with DENV replication. In this study, we showed that induction or exogenous overexpression of heme oxygenase-1 (HO-1), an antioxidant enzyme, effectively inhibited DENV replication in DENV-infected Huh-7 cells. This antiviral effect of HO-1 was attenuated by its inhibitor tin protoporphyrin (SnPP), suggesting that HO-1 was an important cellular factor against DENV replication. Biliverdin but not carbon monoxide and ferrous ions, which are products of the HO-1 on heme, mediated the HO-1-induced anti-DENV effect by non-competitively inhibiting DENV protease, with an inhibition constant (Ki) of 8.55 ± 0.38 μM. Moreover, HO-1 induction or its exogenous overexpression, rescued DENV-suppressed antiviral interferon response. Moreover, we showed that HO-1 induction by cobalt protoporphyrin (CoPP) and andrographolide, a natural product, as evidenced by a significant delay in the onset of disease and mortality, and virus load in the infected mice’s brains. These findings clearly revealed that a drug or therapy that induced the HO-1 signal pathway was a promising strategy for treating DENV infection. PMID:27553177

  20. Human heme oxygenase 1 is a potential host cell factor against dengue virus replication.

    PubMed

    Tseng, Chin-Kai; Lin, Chun-Kuang; Wu, Yu-Hsuan; Chen, Yen-Hsu; Chen, Wei-Chun; Young, Kung-Chia; Lee, Jin-Ching

    2016-01-01

    Dengue virus (DENV) infection and replication induces oxidative stress, which further contributes to the progression and pathogenesis of the DENV infection. Modulation of host antioxidant molecules may be a useful strategy for interfering with DENV replication. In this study, we showed that induction or exogenous overexpression of heme oxygenase-1 (HO-1), an antioxidant enzyme, effectively inhibited DENV replication in DENV-infected Huh-7 cells. This antiviral effect of HO-1 was attenuated by its inhibitor tin protoporphyrin (SnPP), suggesting that HO-1 was an important cellular factor against DENV replication. Biliverdin but not carbon monoxide and ferrous ions, which are products of the HO-1 on heme, mediated the HO-1-induced anti-DENV effect by non-competitively inhibiting DENV protease, with an inhibition constant (Ki) of 8.55 ± 0.38 μM. Moreover, HO-1 induction or its exogenous overexpression, rescued DENV-suppressed antiviral interferon response. Moreover, we showed that HO-1 induction by cobalt protoporphyrin (CoPP) and andrographolide, a natural product, as evidenced by a significant delay in the onset of disease and mortality, and virus load in the infected mice's brains. These findings clearly revealed that a drug or therapy that induced the HO-1 signal pathway was a promising strategy for treating DENV infection. PMID:27553177

  1. Identification of an Unclassified Paramyxovirus in Coleura afra: A Potential Case of Host Specificity

    PubMed Central

    Maganga, Gael D.; Bourgarel, Mathieu; Obame Nkoghe, Judicael; N'Dilimabaka, Nadine; Drosten, Christian; Paupy, Christophe; Morand, Serge; Drexler, Jan Felix; Leroy, Eric M.

    2014-01-01

    Bats are known to harbor multiple paramyxoviruses. Despite the creation of two new genera, Aquaparamyxovirus and Ferlavirus, to accommodate this increasing diversity, several recently isolated or characterized viruses remain unclassified beyond the subfamily level. In the present study, among 985 bats belonging to 6 species sampled in the Belinga caves of Gabon, RNA of an unclassified paramyxovirus (Belinga bat virus, BelPV) was discovered in 14 African sheath-tailed bats (Coleura afra), one of which exhibited several hemorrhagic lesions at necropsy, and viral sequence was obtained in two animals. Phylogenetically, BelPV is related to J virus and Beilong virus (BeiPV), two other unclassified paramyxoviruses isolated from rodents. In the diseased BelPV-infected C. afra individual, high viral load was detected in the heart, and the lesions were consistent with those reported in wild rodents and mice experimentally infected by J virus. BelPV was not detected in other tested bat species sharing the same roosting sites and living in very close proximity with C. afra in the two caves sampled, suggesting that this virus may be host-specific for C. afra. The mode of transmission of this paramyxovirus in bat populations remains to be discovered. PMID:25551455

  2. Water resources review: Ocoee reservoirs, 1990

    SciTech Connect

    Cox, J.P.

    1990-08-01

    Tennessee Valley Authority (TVA) is preparing a series of reports to make technical information on individual TVA reservoirs readily accessible. These reports provide a summary of reservoir purpose and operation; physical characteristics of the reservoir and watershed; water quality conditions; aquatic biological conditions; and designated, actual and potential uses of the reservoir and impairments of those use. This reservoir status report addressed the three Ocoee Reservoirs in Polk County, Tennessee.

  3. Glycoconjugates in Host-Helminth Interactions

    PubMed Central

    Prasanphanich, Nina Salinger; Mickum, Megan L.; Heimburg-Molinaro, Jamie; Cummings, Richard D.

    2013-01-01

    Helminths are multicellular parasitic worms that comprise a major class of human pathogens and cause an immense amount of suffering worldwide. Helminths possess an abundance of complex and unique glycoconjugates that interact with both the innate and adaptive arms of immunity in definitive and intermediate hosts. These glycoconjugates represent a major untapped reservoir of immunomodulatory compounds, which have the potential to treat autoimmune and inflammatory disorders, and antigenic glycans, which could be exploited as vaccines and diagnostics. This review will survey current knowledge of the interactions between helminth glycans and host immunity and highlight the gaps in our understanding which are relevant to advancing therapeutics, vaccine development, and diagnostics. PMID:24009607

  4. Bacteriophages with Potential for Inactivation of Fish Pathogenic Bacteria: Survival, Host Specificity and Effect on Bacterial Community Structure

    PubMed Central

    Pereira, Carla; Silva, Yolanda J.; Santos, Ana L.; Cunha, Ângela; Gomes, Newton C. M.; Almeida, Adelaide

    2011-01-01

    Phage therapy may represent a viable alternative to antibiotics to inactivate fish pathogenic bacteria. Its use, however, requires the awareness of novel kinetics phenomena not applied to conventional drug treatments. The main objective of this work was to isolate bacteriophages with potential to inactivate fish pathogenic bacteria, without major effects on the structure of natural bacterial communities of aquaculture waters. The survival was determined in marine water, through quantification by the soft agar overlay technique. The host specificity was evaluated by cross infection. The ecological impact of phage addition on the structure of the bacterial community was evaluated by DGGE of PCR amplified 16S rRNA gene fragments. The survival period varied between 12 and 91 days, with a higher viability for Aeromonas salmonicida phages. The phages of Vibrio parahaemolyticus and of A. salmonicida infected bacteria of different families with a high efficacy of plating. The specific phages of pathogenic bacteria had no detectable impact on the structure of the bacterial community. In conclusion, V. parahaemolyticus and A. salmonicida phages show good survival time in marine water, have only a moderated impact on the overall bacterial community structure and the desired specificity for host pathogenic bacteria, being potential candidates for therapy of fish infectious diseases in marine aquaculture systems. PMID:22163184

  5. The energy-water nexus: Potential groundwater-quality degradation associated with petroleum production from shale and tight reservoirs

    NASA Astrophysics Data System (ADS)

    Kharaka, Y. K.; Gans, K. D.; Conaway, C. H.; Thordsen, J. J.; Thomas, B.

    2013-12-01

    Oil and natural gas are the main sources of primary energy in the USA, providing 63% of total energy consumption in 2011. Production of petroleum from shale and very low permeability reservoirs has increased substantially due to recent developments in deep horizontal drilling, downhole telemetry and massive multi-stage hydraulic fracturing using ';slick water'. Production of natural gas from shale has increased rapidly, from 0.4 Tcf in 2000, to 6.8 Tcf in 2011, almost 30% of gas production in USA; it is projected to increase to account for 49% of USA gas in 2035. U.S. crude oil production has also increased from 5.0 Mbpd in 2008 to 5.6 Mbpd in 2011; oil from unconventional sources in 2035 is projected to be 0.7 to 2.8 Mbpd, accounting for 36% of domestic production. Hydraulic fracturing is carried out by injecting large volumes (~10,000-50,000 m3/well) of fresh water with added proppant, and organic and inorganic chemicals at high fluid pressures. Approximately 500-5,000 m3/well of water are also used for drilling the wells. The total water used for shale gas wells is relatively low compared to the consumptive total water usage in wet regions (e.g. 0.06% of water for the Marcellus Shale); but is much higher in arid regions (e.g. 0.8% for the Haynesville Shale) where water used could be a significant constraint for gas development because its use could impact the available water supply. Fluid pressure is lowered following hydraulic fracturing, causing the ';flowback' brine, which is a mixture of fracturing fluid and formation water, to return to the surface through the casing. During the 2-3 weeks of the ';flowback' period for a Marcellus Shale well, 10-50% of the fracturing fluid returns to the surface, initially at high rates (~1,000 m3/day), decreasing finally to ~ 50 m3/day. The salinity of the ';flowback' water is initially moderate (45,000 mg/L TDS), reflecting the composition of the fracturing water, and increasing to ~200,000 mg/L TDS. Production of natural

  6. Hepatitis B virus lineages in mammalian hosts: Potential for bidirectional cross-species transmission

    PubMed Central

    Bonvicino, Cibele R; Moreira, Miguel A; Soares, Marcelo A

    2014-01-01

    The hepatitis B virus (HBV) is a cosmopolitan infectious agent currently affecting over 350 million people worldwide, presently accounting for more than two billion infections. In addition to man, other hepatitis virus strains infect species of several mammalian families of the Primates, Rodentia and Chiroptera orders, in addition to birds. The mounting evidence of HBV infection in African, Asian and neotropical primates draws attention to the potential cross-species, zoonotic transmission of these viruses to man. Moreover, recent evidence also suggests the humans may also function as a source of viral infection to other mammals, particularly to domestic animals like poultry and swine. In this review, we list all evidence of HBV and HBV-like infection of nonhuman mammals and discuss their potential roles as donors or recipients of these viruses to humans and to other closely-related species. PMID:24976704

  7. Potential for Nitrogen Fixation and Nitrification in the Granite-Hosted Subsurface at Henderson Mine, CO

    PubMed Central

    Swanner, Elizabeth D.; Templeton, Alexis S.

    2011-01-01

    The existence of life in the deep terrestrial subsurface is established, yet few studies have investigated the origin of nitrogen that supports deep life. Previously, 16S rRNA gene surveys cataloged a diverse microbial community in subsurface fluids draining from boreholes 3000 feet deep at Henderson Mine, CO, USA (Sahl et al., 2008). The prior characterization of the fluid chemistry and microbial community forms the basis for the further investigation here of the source of NH4+. The reported fluid chemistry included N2, NH4+ (5–112 μM), NO2− (27–48 μM), and NO3− (17–72 μM). In this study, the correlation between low NH4+ concentrations in dominantly meteoric fluids and higher NH4+ in rock-reacted fluids is used to hypothesize that NH4+ is sourced from NH4+-bearing biotite. However, biotite samples from the host rocks and ore-body minerals were analyzed by Fourier transform infrared (FTIR) microscopy and none-contained NH4+. However, the nitrogenase-encoding gene nifH was successfully amplified from DNA of the fluid sample with high NH4+, suggesting that subsurface microbes have the capability to fix N2. If so, unregulated nitrogen fixation may account for the relatively high NH4+ concentrations in the fluids. Additionally, the amoA and nxrB genes for archaeal ammonium monooxygenase and nitrite oxidoreductase, respectively, were amplified from the high NH4+ fluid DNA, while bacterial amoA genes were not. Putative nitrifying organisms are closely related to ammonium-oxidizing Crenarchaeota and nitrite-oxidizing Nitrospira detected in other subsurface sites based upon 16S rRNA sequence analysis. Thermodynamic calculations underscore the importance of NH4+ as an energy source in a subsurface nitrification pathway. These results suggest that the subsurface microbial community at Henderson is adapted to the low nutrient and energy environment by their capability of fixing nitrogen, and that fixed nitrogen may support subsurface biomass via

  8. Polonium behaviour in reservoirs potentially affected by acid mine drainage (AMD) in the Iberian Pyrite Belt (SW of Spain).

    PubMed

    Blasco, M; Gázquez, M J; Pérez-Moreno, S M; Grande, J A; Valente, T; Santisteban, M; de la Torre, M L; Bolívar, J P

    2016-02-01

    The province of Huelva is one of the areas most affected by acid mine drainage (AMD) in the world, which can produce big enhancements and fractionations in the waters affected by AMD. There are very few studies on this issue, and none on polonium-210. Twenty-two water reservoirs were sampled, and the (210)Po was measured in both dissolution and particulate phases. The (210)Po concentrations in the waters were in the same order of magnitude to those ones for unperturbed systems, although the data published to particulate matter are very scarce. A mean value and standard uncertainty for (210)Po of 0.25 ± 0.03 mBq L(-1) in the dissolved matter, and 62 ± 9 mBq g(-1) in the particulate matter can be established as base line for the reservoirs of the Huelva area. The distribution coefficients (kd) range from 10(4) to 10(6) L kg(-1), in agreement to the found ones by other authors for the case of neutral waters, but being the lowest values for the more acidic reservoirs. It has been also found that (210)Po has a high tendency to be associated to the particulate matter for neutral-alkaline waters, however, under extreme acid conditions (pH < 3), increases the Po tendency to be associated to the dissolved phase. Therefore, the main conclusion obtained in this work is that AMD has no a significant influence on the total activity concentration of (210)Po in the waters of reservoirs, but the acidity has a clear influence on its distribution between both dissolved and the particulate phases. PMID:26650826

  9. Frio sandstone reservoirs in the deep subsurface along the Texas Gulf Coast: their potential for production of geopressured geothermal energy

    SciTech Connect

    Bebout, D.G.; Loucks, R.G.; Gregory, A.R.

    1983-01-01

    Detailed geological, geophysical, and engineering studies conducted on the Frio Formation have delineated a geothermal test well site in the Austin Bayou Prospect which extends over an area of 60 square miles. A total of 800 to 900 feet of sandstone will occur between the depths of 13,500 and 16,500 feet. At leat 30 percent of the sand will have core permeabilities of 20 to 60 millidarcys. Temperature at the top of the sandstone section will be 300/sup 0/F. Water, produced at a rate of 20,000 to 40,000 barrels per day, will probably have to be disposed of by injection into shallower sandstone reservoirs. More than 10 billion barrels of water are in place in these sandstone reservoirs of the Austin Bayou Prospect; there should be approximately 400 billion cubic feet of methane in solution in this water. Only 10 percent of the water and methane (1 billion barrels of water and 40 billion cubic feet of methane) will be produced without reinjection of the waste water into the producing formation. Reservoir simulation studies indicate that 90 percent of the methane can be produced with reinjection. 106 figures.

  10. Nutrient concentrations and fluxes in the upper catchment of the Miyun Reservoir, China, and potential nutrient reduction strategies.

    PubMed

    Jiao, Jian; Du, Pengfei; Lang, Cong

    2015-03-01

    The Miyun Reservoir is Beijing's main drinking water source. Increased nutrient levels in the reservoir have resulted in an increased risk of harmful algal blooms. One hundred ten water samples were collected at a range of spatial scales in the upper catchment of the Miyun Reservoir and were analyzed for total nitrogen (TN), nitrate (NO3 (-)-N), ammonium (NH4 (+)-N), total phosphorus (TP), and the potassium permanganate index (CODMn). Empirical equations were developed from relationships between nutrient concentrations and the main controls on nutrient, and were used to identify parts of the catchment that should be targeted with nutrient load reduction measures. Cropland was the main source of sediment for the streams, and much of the phosphorus was associated with sediment. The annual mean TP concentrations were closely correlated with both the annual mean suspended sediment concentrations and the ratio of the cropland area to the total basin area. There was a linear relationship between the annual mean TN concentration and the population density in the basins. Soil conservation may play an important role in reducing TP concentrations in the upper reaches of the Chao and Bai Rivers. It may be useful to (1) construct natural riparian buffers and vegetated buffers along croplands close to the watercourses, (2) implement management strategies to reduce nitrogen (N) fertilizer applications, and (3) construct additional wetlands to reduce nutrient loads in the study area. PMID:25673273

  11. Southern Plains Woodrats (Neotoma micropus) from Southern Texas Are Important Reservoirs of Two Genotypes of Trypanosoma cruzi and Host of a Putative Novel Trypanosoma Species

    PubMed Central

    Charles, Roxanne A.; Kjos, Sonia; Ellis, Angela E.; Barnes, John C.

    2013-01-01

    Abstract Trypanosoma cruzi, the causative agent of Chagas' disease, is an important public health and veterinary pathogen. Although human cases are rare in the United States, infections in wildlife, and in some areas domestic dogs, are common. In 2008 and 2010, we investigated T. cruzi prevalence in possible vertebrate reservoirs in southern Texas, with an emphasis on southern plains woodrats (Neotoma micropus). Infection status was determined using a combination of culture isolation, polymerase chain reaction (PCR), and serologic testing. Based on PCR and/or culture, T. cruzi was detected in 35 of 104 (34%) woodrats, 3 of 4 (75%) striped skunks (Mephitis mephitis), 12 of 20 (60%) raccoons (Procyon lotor), and 5 of 28 (18%) other rodents including a hispid cotton rat (Sigmodon hispidus), rock squirrel (Otospermophilus variegatus), black rat (Rattus rattus), and two house mice (Mus musculus). Additionally, another Trypanosoma species was detected in 41 woodrats, of which 27 were co-infected with T. cruzi. Genetic characterization of T. cruzi revealed that raccoon, rock squirrel, and cotton rat isolates were genotype TcIV, while woodrats and skunks were infected with TcI and TcIV. Based on the Chagas Stat-Pak assay, antibodies were detected in 27 woodrats (26%), 13 raccoons (65%), 4 skunks (100%), and 5 other rodents (18%) (two white-ankled mice [Peromyscus pectoralis laceianus], two house mice, and a rock squirrel). Seroprevalence based on indirect immunofluorescence antibody testing was higher for both woodrats (37%) and raccoons (90%), compared with the Chagas Stat-Pak. This is the first report of T. cruzi in a hispid cotton rat, black rat, rock squirrel, and white-ankled mouse. These data indicate that based on culture and PCR testing, the prevalence of T. cruzi in woodrats is comparable with other common reservoirs (i.e., raccoons and opossums) in the United States. However, unlike raccoons and opossums, which tend to be infected with a particular genotype

  12. Southern plains woodrats (Neotoma micropus) from southern Texas are important reservoirs of two genotypes of Trypanosoma cruzi and host of a putative novel Trypanosoma species.

    PubMed

    Charles, Roxanne A; Kjos, Sonia; Ellis, Angela E; Barnes, John C; Yabsley, Michael J

    2013-01-01

    Trypanosoma cruzi, the causative agent of Chagas' disease, is an important public health and veterinary pathogen. Although human cases are rare in the United States, infections in wildlife, and in some areas domestic dogs, are common. In 2008 and 2010, we investigated T. cruzi prevalence in possible vertebrate reservoirs in southern Texas, with an emphasis on southern plains woodrats (Neotoma micropus). Infection status was determined using a combination of culture isolation, polymerase chain reaction (PCR), and serologic testing. Based on PCR and/or culture, T. cruzi was detected in 35 of 104 (34%) woodrats, 3 of 4 (75%) striped skunks (Mephitis mephitis), 12 of 20 (60%) raccoons (Procyon lotor), and 5 of 28 (18%) other rodents including a hispid cotton rat (Sigmodon hispidus), rock squirrel (Otospermophilus variegatus), black rat (Rattus rattus), and two house mice (Mus musculus). Additionally, another Trypanosoma species was detected in 41 woodrats, of which 27 were co-infected with T. cruzi. Genetic characterization of T. cruzi revealed that raccoon, rock squirrel, and cotton rat isolates were genotype TcIV, while woodrats and skunks were infected with TcI and TcIV. Based on the Chagas Stat-Pak assay, antibodies were detected in 27 woodrats (26%), 13 raccoons (65%), 4 skunks (100%), and 5 other rodents (18%) (two white-ankled mice [Peromyscus pectoralis laceianus], two house mice, and a rock squirrel). Seroprevalence based on indirect immunofluorescence antibody testing was higher for both woodrats (37%) and raccoons (90%), compared with the Chagas Stat-Pak. This is the first report of T. cruzi in a hispid cotton rat, black rat, rock squirrel, and white-ankled mouse. These data indicate that based on culture and PCR testing, the prevalence of T. cruzi in woodrats is comparable with other common reservoirs (i.e., raccoons and opossums) in the United States. However, unlike raccoons and opossums, which tend to be infected with a particular genotype, southern

  13. Host and Potential Vector Susceptibility to an Emerging Orbivirus in the United States: Epizootic Hemorrhagic Disease Virus Serotype 6.

    PubMed

    Ruder, M G; Stallknecht, D E; Allison, A B; Mead, D G; Carter, D L; Howerth, E W

    2016-05-01

    Epizootic hemorrhagic disease viruses (EHDVs) are orbiviruses transmitted byCulicoidesbiting midges to domestic and wild ruminants. EHDV-1 and EHDV-2 are endemic in the United States, where epizootic hemorrhagic disease is the most significant viral disease of white-tailed deer (WTD;Odocoileus virginianus) and reports of epizootic hemorrhagic disease in cattle are increasing. In 2006, a reassortant EHDV-6 was isolated from dead WTD in Indiana and has been detected each subsequent year over a wide geographic region. Since EHDV-6 is not a historically endemic serotype in the United States, it is important to understand infection outcome in potential hosts. Specifically, we aimed to evaluate the pathogenicity of the virus in 2 primary US ruminant hosts (WTD and cattle) and the susceptibility of a confirmed US vector (Culicoides sonorensis). Five WTD and 4 cattle were inoculated with >10(6)TCID50EHDV-6 by intradermal and subcutaneous injection. All 5 WTD exhibited moderate to severe disease, and 3 died. Viremia was first detected 3 to 5 days postinfection (dpi) with surviving animals seroconverting by 10 dpi. Two of 4 inoculated cattle had detectable viremia, 5 to 10 dpi and 7 to 24 dpi, respectively. No clinical, hematologic, or pathologic abnormalities were observed. Antibodies were detected by 10 dpi in 3 of 4 cows.C. sonorensiswere fed on WTD blood spiked with EHDV-6 and held for 4 to 14 days postfeeding at 25°C. From 4 to 14 days postfeeding, 19 of 171 midges were virus isolation positive and 6 of 171 had ≥10(2.7)TCID50EHDV-6. Although outcomes varied, these studies demonstrate the susceptibility of ruminant and vector hosts in the United States for this recently emerged EHDV serotype. PMID:26459518

  14. Different carbon reservoirs of auriferous fluids in African Archean and Proterozoic gold deposits? Constraints from stable carbon isotopic compositions of quartz-hosted CO2-rich fluid inclusions

    NASA Astrophysics Data System (ADS)

    Lüders, Volker; Klemd, Reiner; Oberthür, Thomas; Plessen, Birgit

    2015-04-01

    Stable carbon (and when present, nitrogen) isotope ratios of fluid inclusions in quartz from selected gold deposits in Ghana and Zimbabwe have been analyzed using a crushing device interfaced to an isotopic ratio mass spectrometer (IRMS) in order to constrain possible sources of the auriferous fluids. The study revealed a striking difference in stable carbon isotopic compositions of CO2 in quartz-hosted fluid inclusions from Archean and Paleoproterozoic orogenic gold deposits and points to diverse sources of CO2 in the studied deposits. Whether this finding can be generalized for other Archean and Proterozoic orogenic gold deposits worldwide remains open. However, a significant CO2 contribution by mantle degassing can be ruled out for every deposit studied. Devolatilization of greenstone belt rocks is the most likely source for CO2 in some Archean Au deposits in Zimbabwe, whereas CO2 in Proterozoic vein-type Au deposits in the West African Craton is most likely derived from Corg-bearing metasedimentary rocks. The δ13CCO2 values of high-density CO2-rich, water-poor inclusions hosted in quartz pebbles from the world-class Au-bearing conglomerate deposits at Tarkwa (Ghana) differ considerably from the δ13CCO2 values of similar high-density CO2-rich inclusions in vein quartz from the giant Ashanti deposit (Ghana) and disprove the idea of derivation of the Tarkwaian quartz (and gold?) from an older equivalent to the Ashanti vein-type gold deposit.

  15. Virulence Attributes and Host Response Assays for Determining Pathogenic Potential of Pseudomonas Strains Used in Biotechnology

    PubMed Central

    Tayabali, Azam F.; Coleman, Gordon; Nguyen, Kathy C.

    2015-01-01

    Pseudomonas species are opportunistically pathogenic to humans, yet closely related species are used in biotechnology applications. In order to screen for the pathogenic potential of strains considered for biotechnology applications, several Pseudomonas strains (P.aeruginosa (Pa), P.fluorescens (Pf), P.putida (Pp), P.stutzeri (Ps)) were compared using functional virulence and toxicity assays. Most Pa strains and Ps grew at temperatures between 28°C and 42°C. However, Pf and Pp strains were the most antibiotic resistant, with ciprofloxacin and colistin being the most effective of those tested. No strain was haemolytic on sheep blood agar. Almost all Pa, but not other test strains, produced a pyocyanin-like chromophore, and caused cytotoxicity towards cultured human HT29 cells. Murine endotracheal exposures indicated that the laboratory reference strain, PAO1, was most persistent in the lungs. Only Pa strains induced pro-inflammatory and inflammatory responses, as measured by elevated cytokines and pulmonary Gr-1 -positive cells. Serum amyloid A was elevated at ≥ 48 h post-exposure by only some Pa strains. No relationship was observed between strains and levels of peripheral leukocytes. The species designation or isolation source may not accurately reflect pathogenic potential, since the clinical strain Pa10752 was relatively nonvirulent, but the industrial strain Pa31480 showed comparable virulence to PAO1. Functional assays involving microbial growth, cytotoxicity and murine immunological responses may be most useful for identifying problematic Pseudomonas strains being considered for biotechnology applications. PMID:26619347

  16. Mycobacterium-Induced Potentiation of Type 1 Immune Responses and Protection against Malaria Are Host Specific

    PubMed Central

    Page, Kathleen R.; Jedlicka, Anne E.; Fakheri, Benjamin; Noland, Gregory S.; Kesavan, Anup K.; Scott, Alan L.; Kumar, Nirbhay; Manabe, Yukari C.

    2005-01-01

    Malaria and tuberculosis are endemic in many regions of the world, and coinfection with the two pathogens is common. In this study, we examined the effects of long- and short-term infection with Mycobacterium tuberculosis on the course of a lethal form of murine malaria in resistant (C57BL/6) and susceptible (BALB/c) mice. C57BL/6 mice coinfected with M. tuberculosis CDC1551 and Plasmodium yoelii 17XL had a lower peak parasitemia and increased survival compared to mice infected with P. yoelii 17XL alone. Splenic microarray analysis demonstrated potentiation of type 1 immune responses in coinfected C57BL/6 mice, which was especially prominent 5 days after infection with P. yoelii 17XL. Splenocytes from coinfected C57BL/6 mice produced higher levels of gamma interferon (IFN-γ) and tumor necrosis factor alpha than splenocytes from mice infected with either pathogen alone. Interestingly, mycobacterium-induced protection against lethal P. yoelii is mouse strain specific. BALB/c mice were significantly more susceptible than C57BL/6 mice to infection with P. yoelii 17XL and were not protected against lethal malaria by coinfection with M. tuberculosis. In addition, M. tuberculosis did not augment IFN-γ responses in BALB/c mice subsequently infected with P. yoelii 17XL. These data indicate that M. tuberculosis-induced potentiation of type 1 immune responses is associated with protection against lethal murine malaria. PMID:16299335

  17. Assessment of potential impact of the Clinch River Breeder Reactor Plant thermal effluent on the Watts Bar Reservoir striped bass population

    SciTech Connect

    Heuer, J H; McIntosh, D; Ostrowski, P; Tomljanovich, D A

    1983-11-01

    This report is an assessment of potential adverse impact to striped bass (Morone saxatilis) in Watts Bar Reservoir caused by thermal effluent from operation of the Clinch River Breeder Reactor Plant (CRBRP). The Clinch River arm of Watts Bar Reservoir is occupied by adult striped bass during the warmest months of the year. Concern was raised that operation of the CRBRP, specifically thermal discharges, could conflict with management of striped bass. In all cases examined the thermal plume becomes nearly imperceptible within a short distance from the discharge pipe (about 30 ft (10 m)) compared to river width (about 630 ft (190 m)). Under worst case conditions any presence of the plume in the main channel (opposite side of the river from the discharge) will be confined to the surface layer of the water. An ample portion of river cross sections containing ambient temperature water for passage or residence of adult striped bass will always be available in the vicinity of this thermal effluent. Although a small portion of river cross section would exceed the thermal tolerance of striped bass, the fish would naturally avoid this area and seek out adjacent cooler water. Therefore, it is concluded the CRBRP thermal effluent will not significantly affect the integrity of the striped bass thermal refuge in the Clinch River arm of Watts Bar Reservoir. At this time there is no need to consider alternative diffuser designs and thermal modeling. 8 references, 3 figures, 2 tables.

  18. Trace metals and persistent organic pollutants in sediments from river-reservoir systems in Democratic Republic of Congo (DRC): Spatial distribution and potential ecotoxicological effects.

    PubMed

    Mwanamoki, Paola M; Devarajan, Naresh; Thevenon, Florian; Birane, Niane; de Alencastro, Luiz Felippe; Grandjean, Dominique; Mpiana, Pius T; Prabakar, Kandasamy; Mubedi, Josué I; Kabele, Christophe G; Wildi, Walter; Poté, John

    2014-09-01

    This paper discusses the occurrence and spatial distribution of metals and persistent organic pollutants (POPs: including organochlorine pesticides (OCPs), polychlorinated biphenyls (PCBs), Polybrominated diphenyl ethers (PBDEs), and polycyclic aromatic hydrocarbons (PAHs) in sediments from a river-reservoir system. Surface sediments were sampled from thirteen sites of the Congo River Basin and Lake Ma Vallée, both situated in the vicinity of the capital city Kinshasa (Congo Democratic Republic). Sediment qualities were evaluated using toxicity test based on exposing Ostracods to the sediment samples. The highest metal concentrations were observed in sediments subjected to anthropogenic influences, urban runoff and domestic and industrial wastewaters, discharge into the Congo River basin. Ostracods exposed to the sediments resulted in 100% mortality rates after 6d of incubation, indicating the ultimate toxicity of these sediments as well as potential environmental risks. The POPs and PAHs levels in all sediment samples were low, with maximum concentration found in the sediments (area of pool Malebo): OCP value ranged from 0.02 to 2.50 with ∑OCPs: 3.3μgkg(-1); PCB ranged from 0.07 to 0.99 with Total PCBs (∑7×4.3): 15.31μgkg(-1); PAH value ranged from 0.12 to 9.39 with ∑PAHs: 63.89μgkg(-1). Our results indicate that the deterioration of urban river-reservoir water quality result mainly from urban stormwater runoff, untreated industrial effluents which discharge into the river-reservoirs, human activities and uncontrolled urbanization. This study represents useful tools incorporated to evaluate sediment quality in river-reservoir systems which can be applied to similar aquatic environments. PMID:24997956

  19. Species' Life-History Traits Explain Interspecific Variation in Reservoir Competence: A Possible Mechanism Underlying the Dilution Effect

    PubMed Central

    Huang, Zheng Y. X.; de Boer, Willem F.; van Langevelde, Frank; Olson, Valerie; Blackburn, Tim M.; Prins, Herbert H. T.

    2013-01-01

    Hosts species for multi-host pathogens show considerable variation in the species' reservoir competence, which is usually used to measure species' potential to maintain and transmit these pathogens. Although accumulating research has proposed a trade-off between life-history strategies and immune defences, only a few studies extended this to host species' reservoir competence. Using a phylogenetic comparative approach, we studied the relationships between some species' life-history traits and reservoir competence in three emerging infectious vector-borne disease systems, namely Lyme disease, West Nile Encephalitis (WNE) and Eastern Equine Encephalitis (EEE). The results showed that interspecific variation in reservoir competence could be partly explained by the species' life histories. Species with larger body mass (for hosts of Lyme disease and WNE) or smaller clutch size (for hosts of EEE) had a higher reservoir competence. Given that both larger body mass and smaller clutch size were linked to higher extinction risk of local populations, our study suggests that with decreasing biodiversity, species with a higher reservoir competence are more likely to remain in the community, and thereby increase the risk of transmitting these pathogens, which might be a possible mechanism underlying the dilution effect. PMID:23365661

  20. Species' life-history traits explain interspecific variation in reservoir competence: a possible mechanism underlying the dilution effect.

    PubMed

    Huang, Zheng Y X; de Boer, Willem F; van Langevelde, Frank; Olson, Valerie; Blackburn, Tim M; Prins, Herbert H T

    2013-01-01

    Hosts species for multi-host pathogens show considerable variation in the species' reservoir competence, which is usually used to measure species' potential to maintain and transmit these pathogens. Although accumulating research has proposed a trade-off between life-history strategies and immune defences, only a few studies extended this to host species' reservoir competence. Using a phylogenetic comparative approach, we studied the relationships between some species' life-history traits and reservoir competence in three emerging infectious vector-borne disease systems, namely Lyme disease, West Nile Encephalitis (WNE) and Eastern Equine Encephalitis (EEE). The results showed that interspecific variation in reservoir competence could be partly explained by the species' life histories. Species with larger body mass (for hosts of Lyme disease and WNE) or smaller clutch size (for hosts of EEE) had a lower reservoir competence [corrected]. Given that both larger body mass and smaller clutch size were linked to higher extinction risk of local populations, our study suggests that with decreasing biodiversity, species with a higher reservoir competence are more likely to remain in the community, and thereby increase the risk of transmitting these pathogens, which might be a possible mechanism underlying the dilution effect. PMID:23365661

  1. Engineered fungal polyketide biosynthesis in Pichia pastoris: a potential excellent host for polyketide production

    PubMed Central

    2013-01-01

    Background Polyketides are one of the most important classes of secondary metabolites and usually make good drugs. Currently, heterologous production of fungal polyketides for developing a high potential industrial application system with high production capacity and pharmacutical feasibility was still at its infancy. Pichia pastoris is a highly successful system for the high production of a variety of heterologous proteins. In this work, we aim to develop a P. pastoris based in vivo fungal polyketide production system for first time and evaluate its feasibility for future industrial application. Results A recombinant P. pastoris GS115-NpgA-ATX with Aspergillus nidulans phosphopantetheinyl transferase (PPtase) gene npgA and Aspergillus terrus 6-methylsalicylic acid (6-MSA) synthase (6-MSAS) gene atX was constructed. A specific compound was isolated and idenified as 6-MSA by HPLC, LC-MS and NMR. Transcription of both genes were detected. In 5-L bioreactor, the GS115-NpgA-ATX grew well and produced 6-MSA quickly until reached a high value of 2.2 g/L by methanol induction for 20 hours. Thereafter, the cells turned to death ascribing to high concentration of antimicrobial 6-MSA. The distribution of 6-MSA changed that during early and late induction phase it existed more in supernatant while during intermediate stage it mainly located intracellular. Different from 6-MSA production strain, recombinant M. purpureus pksCT expression strains for citrinin intermediate production, no matter PksCT located in cytoplasm or in peroxisomes, did not produce any specfic compound. However, both npgA and pksCT transcripted effectively in cells and western blot analysis proved the expression of PPtase. Then the PPTase was expressed and purified, marked by fluorescent probes, and reacted with purified ACP domain and its mutant ACPm of PksCT. Fluoresence was only observed in ACP but not ACPm, indicating that the PPTase worked well with ACP to make it bioactive holo-ACP. Thus, some

  2. Bayou virus detected in non-oryzomyine rodent hosts: an assessment of habitat composition, reservoir community structure, and marsh rice rat social dynamics.

    PubMed

    Holsomback, Tyla S; McIntyre, Nancy E; Nisbett, Richard A; Strauss, Richard E; Chu, Yong-Kyu; Abuzeineh, Alisa A; de la Sancha, Noé; Dick, Carl W; Jonsson, Colleen B; Morris, Brandon E L

    2009-06-01

    In the United States, Bayou virus (BAYV) ranks second only to Sin Nombre virus (SNV) in terms of hantavirus pulmonary syndrome (HPS) incidents, having been confirmed in cases from Texas and Louisiana since its discovery in 1994. This study on BAYV infection among sympatric, non-oryzomyine rodents ("spillover") in Freeport, TX, is the first to link patterns of hantavirus interspecific spillover with the spatiotemporal ecology of the primary host (marsh rice rat, Oryzomys palustris). Mark-recapture and/or harvest methods were employed from March 2002 through May 2004 in two macrohabitat types. Rodent blood samples were screened for the presence of IgG antibody to BAYV antigen by IFA after which Ab-positive blood, saliva, and urine were analyzed for the presence of viral RNA by nested RT-PCR. From 727 non-oryzomyine captures, five seropositive (but not viral RNA positive) individuals were detected: one each of Baiomys taylori, Peromyscus leucopus, and Reithrodontomys fulvescens; and two Sigmodon hispidus. Spillover hosts were not associated with macrohabitat where O. palustris abundance, density, or seroprevalence was highest. Rather, spillover occurred in the macrohabitat indicative of greater overall disturbance (as indicated by grazing and exotic plant diversity) and overall biodiversity. Spillover occurred during periods of high seroprevalence detected elsewhere within the study region. Spillover locations differed significantly from all other capture locations in terms of percent water, shrub, and grass cover. Although greater habitat and mammal diversity of old-fields may serve to reduce seroprevalence levels by tempering intraspecific contacts between rice rats, greater diversity also may create an ecologically opportunistic setting for BAYV spillover. Impacts of varying levels of disturbance and biodiversity on transmission dynamics represent a vastly uncharacterized component of the evolutionary ecology of hantaviruses. PMID:20836801

  3. Review of potential host rocks for radioactive waste disposal in the southeastern United States. Executive summary

    SciTech Connect

    Bledsoe, H.W. Jr.; Marine, I.W.

    1980-10-01

    The geology of the southeastern United States was studied to recommend areas that should be considered for field exploration in order to select a site for a radioactive waste repository. The region studied included the Piedmont Province, the Triassic Basins, and the Atlantic Coastal Plain in Maryland, Virginia, North Carolina, South Carolina, and Georgia. This study was entirely a review of literature and existing knowledge from a geotechnical point of view and was performed by subcontractors whose individual reports are listed in the bibliography. No field work was involved. The entire study was geotechnical in nature, and no consideration was given to socioeconomic or demographic factors. These factors need to be addressed in a separate study. For all areas, field study is needed before any area is further considered. A total of 29 areas are recommended for further consideration in the Piedmont Province subregion: one area in Maryland, 8 areas in Virginia, 4 areas in North Carolina, 6 areas in South Carolina, and 10 areas in Georgia. Of the 14 exposed and 5 buried or hypothesized basins identified in the Triassic basin subregion, 6 are recommended for further study: one basin in Virginia, 3 basins in North Carolina, and 2 basins in South Carolina. Four potential candidate areas are identified within the Atlantic Coastal Plain subregion: one in Maryland, one in North Carolina, and 2 in Georgia.

  4. Host serum miR-223 is a potential new biomarker for Schistosoma japonicum infection and the response to chemotherapy

    PubMed Central

    2013-01-01

    Background Numerous studies have shown that aberrant microRNA (miRNA) expression is associated with the pathogenesis and progression of various human diseases. Hence, serum miRNAs are considered to be potential biomarkers for the diagnosis of human diseases. This study examined whether several miRNAs known to be commonly deregulated in liver diseases are deregulated in the serum of hosts with hepatic schistosomiasis, and thus whether they could serve as potential markers for detection of schistosome infection and evaluation of the effectiveness of chemotherapy. Methods We analyzed the serum levels of six selected candidate miRNA molecules (miR-146b, miR-122, miR-223, miR-199a-5p, miR-199a-3p, miR-34a) from mice, rabbits, buffalos and humans infected with Schistosoma japonicum using qPCR. We evaluated liver pathology by determining the hydroxyproline content in liver tissues. Primary resident liver cells were isolated to quantify the expression level of deregulated miRNAs. Bioinformatics analyses were also conducted to assess the potential function of miR-223. Results Using a mouse model of Schistosoma japonicum infection, we found that the expression level of serum miR-223 was significantly elevated after infection, but returned to near normal levels after the treatment with praziquantel (PZQ). Importantly, the level of serum miR-223 reflected the extent of liver pathology post-infection. We validated the elevated level of the circulating miR-223 in serum samples of other host species including rabbits, buffalos and humans. In addition, our results showed that miR-223 was primarily located in the Kupffer cells, but its expression levels were significantly up-regulated in hepatocytes, hepatic stellate cells and Kupffer cells after infection. Bioinformatics analyses revealed a potential functional role of miR-223 in transcription regulator activity, transcription factor activity and DNA binding. Conclusions This study suggested that the circulating miR-223 could

  5. Self-mating in the definitive host potentiates clonal outbreaks of the apicomplexan parasites Sarcocystis neurona and Toxoplasma gondii.

    PubMed

    Wendte, Jered M; Miller, Melissa A; Lambourn, Dyanna M; Magargal, Spencer L; Jessup, David A; Grigg, Michael E

    2010-01-01

    Tissue-encysting coccidia, including Toxoplasma gondii and Sarcocystis neurona, are heterogamous parasites with sexual and asexual life stages in definitive and intermediate hosts, respectively. During its sexual life stage, T. gondii reproduces either by genetic out-crossing or via clonal amplification of a single strain through self-mating. Out-crossing has been experimentally verified as a potent mechanism capable of producing offspring possessing a range of adaptive and virulence potentials. In contrast, selfing and other life history traits, such as asexual expansion of tissue-cysts by oral transmission among intermediate hosts, have been proposed to explain the genetic basis for the clonal population structure of T. gondii. In this study, we investigated the contributing roles self-mating and sexual recombination play in nature to maintain clonal population structures and produce or expand parasite clones capable of causing disease epidemics for two tissue encysting parasites. We applied high-resolution genotyping against strains isolated from a T. gondii waterborne outbreak that caused symptomatic disease in 155 immune-competent people in Brazil and a S. neurona outbreak that resulted in a mass mortality event in Southern sea otters. In both cases, a single, genetically distinct clone was found infecting outbreak-exposed individuals. Furthermore, the T. gondii outbreak clone was one of several apparently recombinant progeny recovered from the local environment. Since oocysts or sporocysts were the infectious form implicated in each outbreak, the expansion of the epidemic clone can be explained by self-mating. The results also show that out-crossing preceded selfing to produce the virulent T. gondii clone. For the tissue encysting coccidia, self-mating exists as a key adaptation potentiating the epidemic expansion and transmission of newly emerged parasite clones that can profoundly shape parasite population genetic structures or cause devastating disease

  6. Coupled reservoir-geomechanical analysis of the potential fortensile and shear failure associated with CO2 injection in multilayeredreservoir-caprock systems

    SciTech Connect

    Rutqvist, J.; Birkholzer, J.T.; Tsang, C.-F.

    2007-03-27

    Coupled reservoir-geomechanical simulations were conductedto study the potential for tensile and shear failure e.g., tensilefracturing and shear slip along pre-existing fractures associated withunderground CO2 injection in a multilayered geological system. Thisfailure analysis aimed to study factors affecting the potential forbreaching a geological CO2 storage system and to study methods forestimating the maximum CO2 injection pressure that could be sustainedwithout causing such a breach. We pay special attention to geomechanicalstress changes resulting from upward migration of the CO2 and how theinitial stress regime affects the potential for inducing failure. Weconclude that it is essential to have an accurate estimate of thethree-dimensional in situ stress field to support the design andperformance assessment of a geological CO2 injection operation. Moreover,we also conclude that it is important to consider mechanical stresschanges that might occur outside the region of increased reservoir fluidpressure (e.g., in the overburden rock) between the CO2-injectionreservoir and the ground surface.

  7. The bud midge Prodiplosis longifila: Damage characteristics, potential distribution and presence on a new crop host in Colombia.

    PubMed

    Hernandez, Luis M; Guzman, Yoan C; Martínez-Arias, Adriana; Manzano, Maria R; Selvaraj, John J

    2015-01-01

    The Dipteran Prodiplosis longifila is a severe pest, mainly of Solanaceae, in South America and some years ago it damaged Tahiti lime crops in the United States. It is a potential invasive pest. Despite its presence in Colombia, nothing is known regarding the taxonomic identification of P. longifila or the characteristics of the damage it produces. Moreover, the current and potential distributions of this pest are unknown. To determine these factors, P. longifila was sampled in several Solanaceae- and Citrus (x) latifolia (Tahiti lime)-producing areas in Colombia. The larvae consumed tender foliage, flowers and fruits in tomato, fruits in sweet pepper, and buds in Tahiti lime. P. longifila was not found in asparagus or in potatoes. Its presence in Tahiti lime was previously unknown in Colombia. Adults recovered in the laboratory were taxonomically identified using male morphological characteristics such as the shapes of the genitalia, antenna and wing. P. longifila was found in the Andean region of Colombia. The ecological niche model for populations found in tomato suggests that P. longifila is limited in its distribution by altitude and variables associated with temperature and precipitation. The highest probability of occurrence is in areas where tomato, sweet pepper and the new host, Tahiti lime, are grown. Therefore, it is necessary to implement preventive measures, such as planting tomato materials free of P. longifila larvae, in areas where the pest is not yet present but where there is the potential for its development. PMID:25977894

  8. Linking Climate Suitability, Spread Rates and Host-Impact When Estimating the Potential Costs of Invasive Pests

    PubMed Central

    Kriticos, Darren J.; Leriche, Agathe; Palmer, David J.; Cook, David C.; Brockerhoff, Eckehard G.; Stephens, Andréa E. A.; Watt, Michael S.

    2013-01-01

    Biosecurity agencies need robust bioeconomic tools to help inform policy and allocate scarce management resources. They need to estimate the potential for each invasive alien species (IAS) to create negative impacts, so that relative and absolute comparisons can be made. Using pine processionary moth (Thaumetopoea pityocampa sensu lato) as an example, these needs were met by combining species niche modelling, dispersal modelling, host impact and economic modelling. Within its native range (the Mediterranean Basin and adjacent areas), T. pityocampa causes significant defoliation of pines and serious urticating injuries to humans. Such severe impacts overseas have fuelled concerns about its potential impacts, should it be introduced to New Zealand. A stochastic bioeconomic model was used to estimate the impact of PPM invasion in terms of pine production value lost due to a hypothetical invasion of New Zealand by T. pityocampa. The bioeconomic model combines a semi-mechanistic niche model to develop a climate-related damage function, a climate-related forest growth model, and a stochastic spread model to estimate the present value (PV) of an invasion. Simulated invasions indicate that Thaumetopoea pityocampa could reduce New Zealand’s merchantable and total pine stem volume production by 30%, reducing forest production by between NZ$1,550 M to NZ$2,560 M if left untreated. Where T. pityocampa is controlled using aerial application of an insecticide, projected losses in PV were reduced, but still significant (NZ$30 M to NZ$2,210 M). The PV estimates were more sensitive to the efficacy of the spray program than the potential rate of spread of the moth. Our novel bioeconomic method provides a refined means of estimating potential impacts of invasive alien species, taking into account climatic effects on asset values, the potential for pest impacts, and pest spread rates. PMID:23405097

  9. Linking climate suitability, spread rates and host-impact when estimating the potential costs of invasive pests.

    PubMed

    Kriticos, Darren J; Leriche, Agathe; Palmer, David J; Cook, David C; Brockerhoff, Eckehard G; Stephens, Andréa E A; Watt, Michael S

    2013-01-01

    Biosecurity agencies need robust bioeconomic tools to help inform policy and allocate scarce management resources. They need to estimate the potential for each invasive alien species (IAS) to create negative impacts, so that relative and absolute comparisons can be made. Using pine processionary moth (Thaumetopoea pityocampa sensu lato) as an example, these needs were met by combining species niche modelling, dispersal modelling, host impact and economic modelling. Within its native range (the Mediterranean Basin and adjacent areas), T. pityocampa causes significant defoliation of pines and serious urticating injuries to humans. Such severe impacts overseas have fuelled concerns about its potential impacts, should it be introduced to New Zealand. A stochastic bioeconomic model was used to estimate the impact of PPM invasion in terms of pine production value lost due to a hypothetical invasion of New Zealand by T. pityocampa. The bioeconomic model combines a semi-mechanistic niche model to develop a climate-related damage function, a climate-related forest growth model, and a stochastic spread model to estimate the present value (PV) of an invasion. Simulated invasions indicate that Thaumetopoea pityocampa could reduce New Zealand's merchantable and total pine stem volume production by 30%, reducing forest production by between NZ$1,550 M to NZ$2,560 M if left untreated. Where T. pityocampa is controlled using aerial application of an insecticide, projected losses in PV were reduced, but still significant (NZ$30 M to NZ$2,210 M). The PV estimates were more sensitive to the efficacy of the spray program than the potential rate of spread of the moth. Our novel bioeconomic method provides a refined means of estimating potential impacts of invasive alien species, taking into account climatic effects on asset values, the potential for pest impacts, and pest spread rates. PMID:23405097

  10. Gorilla gorilla gorilla gut: a potential reservoir of pathogenic bacteria as revealed using culturomics and molecular tools

    PubMed Central

    Bittar, Fadi; Keita, Mamadou B.; Lagier, Jean-Christophe; Peeters, Martine; Delaporte, Eric; Raoult, Didier

    2014-01-01

    Wild apes are considered to be the most serious reservoir and source of zoonoses. However, little data are available about the gut microbiota and pathogenic bacteria in gorillas. For this propose, a total of 48 fecal samples obtained from 21 Gorilla gorilla gorilla individuals (as revealed via microsatellite analysis) were screened for human bacterial pathogens using culturomics and molecular techniques. By applying culturomics to one index gorilla and using specific media supplemented by plants, we tested 12,800 colonies and identified 147 different bacterial species, including 5 new species. Many opportunistic pathogens were isolated, including 8 frequently associated with human diseases; Mycobacterium bolletii, Proteus mirabilis, Acinetobacter baumannii, Klebsiella pneumoniae, Serratia marcescens, Escherichia coli, Staphylococcus aureus and Clostridium botulinum. The genus Treponema accounted for 27.4% of the total reads identified at the genus level via 454 pyrosequencing. Using specific real-time PCR on 48 gorilla fecal samples, in addition to classical human pathogens, we also observed the fastidious bacteria Bartonella spp. Borrelia spp., Coxiella burnetii and Tropheryma whipplei in the gorilla population. We estimated that the prevalence of these pathogens vary between 4.76% and 85.7%. Therefore, gorillas share many bacterial pathogens with humans suggesting that they could be a reservoir for their emergence. PMID:25417711

  11. XO-2b: A Hot Jupiter with a Variable Host Star That Potentially Affects Its Measured Transit Depth

    NASA Astrophysics Data System (ADS)

    Zellem, Robert T.; Griffith, Caitlin A.; Pearson, Kyle A.; Turner, Jake D.; Henry, Gregory W.; Williamson, Michael H.; Ryleigh Fitzpatrick, M.; Teske, Johanna K.; Biddle, Lauren I.

    2015-09-01

    The transiting hot Jupiter XO-2b is an ideal target for multi-object photometry and spectroscopy as it has a relatively bright (V-mag = 11.25) K0V host star (XO-2N) and a large planet-to-star contrast ratio (Rp/Rs ≈ 0.015). It also has a nearby (31.″21) binary stellar companion (XO-2S) of nearly the same brightness (V-mag = 11.20) and spectral type (G9V), allowing for the characterization and removal of shared systematic errors (e.g., airmass brightness variations). We have therefore conducted a multiyear (2012-2015) study of XO-2b with the University of Arizona’s 61″ (1.55 m) Kuiper Telescope and Mont4k CCD in the Bessel U and Harris B photometric passbands to measure its Rayleigh scattering slope to place upper limits on the pressure-dependent radius at, e.g., 10 bar. Such measurements are needed to constrain its derived molecular abundances from primary transit observations. We have also been monitoring XO-2N since the 2013-2014 winter season with Tennessee State University’s Celestron-14 (0.36 m) automated imaging telescope to investigate stellar variability, which could affect XO-2b’s transit depth. Our observations indicate that XO-2N is variable, potentially due to cool star spots, with a peak-to-peak amplitude of 0.0049 ± 0.0007 R-mag and a period of 29.89 ± 0.16 days for the 2013-2014 observing season and a peak-to-peak amplitude of 0.0035 ± 0.0007 R-mag and 27.34 ± 0.21 day period for the 2014-2015 observing season. Because of the likely influence of XO-2N’s variability on the derivation of XO-2b’s transit depth, we cannot bin multiple nights of data to decrease our uncertainties, preventing us from constraining its gas abundances. This study demonstrates that long-term monitoring programs of exoplanet host stars are crucial for understanding host star variability.

  12. Potential Role for Extracellular Glutathione-Dependent Ferric Reductase in Utilization of Environmental and Host Ferric Compounds by Histoplasma capsulatum

    PubMed Central

    Timmerman, Michelle M.; Woods, Jon P.

    2001-01-01

    The mammalian host specifically limits iron during Histoplasma capsulatum infection, and fungal acquisition of iron is essential for productive infection. H. capsulatum expresses several iron acquisition mechanisms under iron-limited conditions in vitro. These components include hydroxamate siderophores, extracellular glutathione-dependent ferric reductase enzyme, extracellular nonproteinaceous ferric reductant(s), and cell surface ferric reducing agent(s). We examined the relationship between these mechanisms and a potential role for the extracellular ferric reductase in utilization of environmental and host ferric compounds through the production of free, soluble Fe(II). Siderophores and ferric reducing agents were coproduced under conditions of iron limitation. The H. capsulatum siderophore dimerum acid and the structurally similar basidiomycete siderophore rhodotorulic acid acted as substrates for the ferric reductase, and rhodotorulic acid removed Fe(III) bound by transferrin. The mammalian Fe(III)-binding compounds hemin and transferrin served both as substrates for the ferric reductase and as iron sources for yeast-phase growth at neutral pH. In the case of transferrin, there was a correlation between the level of iron saturation and efficacy for both of these functions. Our data are not consistent with an entirely pH-dependent mechanism of iron acquisition from transferrin, as has been suggested to occur in the macrophage phagolysosome. The foreign siderophore ferrioxamine B also acted as a substrate for the ferric reductase, while the foreign siderophore ferrichrome did not. Both ferrioxamine and ferrichrome served as iron sources for yeast- and mold-phase growth, the latter presumably by some other acquisition mechanism(s). PMID:11705947

  13. A Family of Diverse Kunitz Inhibitors from Echinococcus granulosus Potentially Involved in Host-Parasite Cross-Talk

    PubMed Central

    Margenat, Mariana; Durán, Rosario; González-Sapienza, Gualberto; Graña, Martín; Parkinson, John; Maizels, Rick M.; Salinas, Gustavo; Alvarez, Beatriz; Fernández, Cecilia

    2009-01-01

    The cestode Echinococcus granulosus, the agent of hydatidosis/echinococcosis, is remarkably well adapted to its definitive host. However, the molecular mechanisms underlying the successful establishment of larval worms (protoscoleces) in the dog duodenum are unknown. With the aim of identifying molecules participating in the E. granulosus-dog cross-talk, we surveyed the transcriptomes of protoscoleces and protoscoleces treated with pepsin at pH 2. This analysis identified a multigene family of secreted monodomain Kunitz proteins associated mostly with pepsin/H+-treated worms, suggesting that they play a role at the onset of infection. We present the relevant molecular features of eight members of the E. granulosus Kunitz family (EgKU-1 – EgKU-8). Although diverse, the family includes three pairs of close paralogs (EgKU-1/EgKU-4; EgKU-3/EgKU-8; EgKU-6/EgKU-7), which would be the products of recent gene duplications. In addition, we describe the purification of EgKU-1 and EgKU-8 from larval worms, and provide data indicating that some members of the family (notably, EgKU-3 and EgKU-8) are secreted by protoscoleces. Detailed kinetic studies with native EgKU-1 and EgKU-8 highlighted their functional diversity. Like most monodomain Kunitz proteins, EgKU-8 behaved as a slow, tight-binding inhibitor of serine proteases, with global inhibition constants (KI*) versus trypsins in the picomolar range. In sharp contrast, EgKU-1 did not inhibit any of the assayed peptidases. Interestingly, molecular modeling revealed structural elements associated with activity in Kunitz cation-channel blockers. We propose that this family of inhibitors has the potential to act at the E. granulosus-dog interface and interfere with host physiological processes at the initial stages of infection. PMID:19759914

  14. Detailed petrophysical and geophysical characterization of core samples from the potential caprock-reservoir system in the Sulcis Coal Basin (South-Western Sardinia - Italy).

    NASA Astrophysics Data System (ADS)

    Fais, Silvana; Ligas, Paola; Cuccuru, Francesco; Maggio, Enrico; Plaisant, Alberto; Pettinau, Alberto

    2015-04-01

    The evaluation of the CO2 geologic storage site requires a robust experimental database especially with respect to spatial petrophysical heterogeneities. The integrated analysis of minero-petrographical, physical and geophysical parameters (e.g. longitudinal and transversal propagation velocity, VpVs ratio, dynamic elastic moduli, etc.) of the rocks that make up a caprock-reservoir system can substantially reduce the geologic uncertainity in the storage site characterization and in the geological and numerical modelling for the evaluation of the CO2 storage capacity. In this study the Middle Eocene - Lower Oligocene Cixerri Formation made up of siliciclastic rocks and the Upper Thanetian - Lower Ypresian Miliolitico Carbonate Complex in the Sulcis coal basin (South-Western Sardinia - Italy) have been identified respectively as potential caprock and reservoir for the CO2 storage. The petrographical, physical and geophysical parameters of the above mentioned geological Formations (Cixerri and Milolitico) were investigated to improve the geological model aimed at verifying the geological CO2 storage capacity within the carbonate reservoir rocks, in order to guarantee an efficient use of the reservoir, and to improve the numerical simulation of CO2 behaviour in the short, medium and long term after its injection in single or multiple wells. . The petrographical characteristics of the caprock-reservoir rocks were determined by optical and SEM analyses of core samples representing the different facies of the Cixerri Formation and of the Miliolitico Carbonate Complex, provided by Carbosulcis S.p.A.. Porosity analysis was completed by mercury porosimeter determinations which also provided quantitative information on the permeability of the study rocks and on the tortuosity of their pore system. Further physical properties, such as dry and saturated density and porosity, and water absorption were determined on the cylindrical core samples of intact rocks (ISRM, 1979) from

  15. Proteomic Analysis on Cercariae and Schistosomula in Reference to Potential Proteases Involved in Host Invasion of Schistosoma japonicum Larvae.

    PubMed

    Liu, Mu; Ju, Chuan; Du, Xiao-Feng; Shen, Hai-Mo; Wang, Ji-Peng; Li, Jian; Zhang, Xu-Min; Feng, Zheng; Hu, Wei

    2015-11-01

    Schistosomiasis is a parasitic zoonosis posing great threat to human health. The infection is acquired by larval cercariae penetrating host skin and transforming into juveniles, schistosomula. Proteolytic enzymes secreted from the cercarial acetabular glands are known to aid to the skin penetration, but molecular mechanisms remain largely unclear. To profile the protein composition and identify potential invasive proteases, we developed a new method for simulating cercarial transformation and collecting schistosomula, and for the first time, we compared the proteomes of Schistosoma japonicum cercariae and schistosomula by using in-gel shotgun proteomic analysis. Totally, 1972 proteins were identified in association with ten main biological processes based on Gene Ontology analysis; 46 proteases were detected in cercariae, and among them, 25 proteases disappeared after penetrated. Notably, leishmanolysins and serine and cysteine proteases were found abundant but differentially expressed. Recombinant serine protease SjCE2b and cysteine protease SjCB2 were produced and used for validation of native proteins. Immunofluorescence and Western blotting assays detected SjCE2b and SjCB2 in cercariae but not in schistosomula, suggesting the two enzymes might be consumed upon skin migration. Our data comprehensively chart the proteomic changes during cercarial invasion, revealing the potential proteases involved, providing a platform for the development of molecular anti-infection strategy. PMID:26370134

  16. Diagenetic signatures in incised valley fills: Differentiation of sequence boundaries from diastems and implications for potential reservoir quality

    SciTech Connect

    Stonecipher, S.A. )

    1996-01-01

    Determining whether a channelized sediment package represents an incised valley fill or a simple prograding system in an area of low accommodation and high sediment supply can be very difficult, especially in proximal or onshore regions where seismic resolution is insufficient to reveal diagnostic indicators of baselevel change such as incision or erosional truncation. However, making this determination is important not only for evaluating the geologic history of a basin, but also for predicting factors such as the existence of associated downdip lowstand sediments, plumbing systems, and reservoir quality. An increasing body of data suggests that it is possible to differentiate between incised valley fills and channelized sediments resting on a diastem on the basis of early diagenetic patterns. The accepted definition of incised valley fills includes them as part of the lowstand system, however diagenetic evidence emphasizes that these sediment packages were deposited largely while relative baselevel was rising. The basal portion of incised valley fill commonly exhibits the characteristics of braided stream to tidally influenced fluvio-estuarine sedimentation and a diagenetic signature indicative of marine pore waters. Deposits underlying the incised valley show evidence of meteoric exposure. A highstand fluvial system resting on a diastem typically exhibits a meteoric diagenetic signature only. Some incised valley fills also contain later stage highstand fluvial deposits which appear to be amalgamated with the underlying fluvio-estuarine sequence, but which exhibit distinctly different diagenetic characteristics. Examples of several Interior Cretaceous Seaway sands (Frontier, Fall River, Muddy) from varying basins, ages, depths, and provenances but with similar depositional and diagenetic traits will be shown and compared with an example from the Miocene of Egypt to illustrate these patterns and their effect on reservoir quality.

  17. Diagenetic signatures in incised valley fills: Differentiation of sequence boundaries from diastems and implications for potential reservoir quality

    SciTech Connect

    Stonecipher, S.A.

    1996-12-31

    Determining whether a channelized sediment package represents an incised valley fill or a simple prograding system in an area of low accommodation and high sediment supply can be very difficult, especially in proximal or onshore regions where seismic resolution is insufficient to reveal diagnostic indicators of baselevel change such as incision or erosional truncation. However, making this determination is important not only for evaluating the geologic history of a basin, but also for predicting factors such as the existence of associated downdip lowstand sediments, plumbing systems, and reservoir quality. An increasing body of data suggests that it is possible to differentiate between incised valley fills and channelized sediments resting on a diastem on the basis of early diagenetic patterns. The accepted definition of incised valley fills includes them as part of the lowstand system, however diagenetic evidence emphasizes that these sediment packages were deposited largely while relative baselevel was rising. The basal portion of incised valley fill commonly exhibits the characteristics of braided stream to tidally influenced fluvio-estuarine sedimentation and a diagenetic signature indicative of marine pore waters. Deposits underlying the incised valley show evidence of meteoric exposure. A highstand fluvial system resting on a diastem typically exhibits a meteoric diagenetic signature only. Some incised valley fills also contain later stage highstand fluvial deposits which appear to be amalgamated with the underlying fluvio-estuarine sequence, but which exhibit distinctly different diagenetic characteristics. Examples of several Interior Cretaceous Seaway sands (Frontier, Fall River, Muddy) from varying basins, ages, depths, and provenances but with similar depositional and diagenetic traits will be shown and compared with an example from the Miocene of Egypt to illustrate these patterns and their effect on reservoir quality.

  18. Water resources review: Chatuge Reservoir, 1991

    SciTech Connect

    Cox, J.; Wallus, R.

    1992-06-01

    TVA is preparing a series of reports that provide technical information on the characteristics and uses of individual TVA reservoirs. These reports present a summary of (1) reservoir purpose and operation; (2) physical characteristics of the reservoir and the watershed; (3) water quality conditions; (4) aquatic biological conditions; and (5) designated, actual, and potential uses of the reservoir and impairments of those uses. This report is for Chatuge Reservoir.

  19. [Potential activity of methane production in soil, peat, and lacustrine sediments and in the Robert Bourassa hydro-electric reservoir in northern Canada].

    PubMed

    Jugnia, Louis-B; Roy, Réal; Planas, Dolors; Lucotte, Marc; Greer, Charles W

    2005-01-01

    Flooding of land associated with the creation of reservoirs may increase, at least in the short term, methane flux to the atmosphere. To evaluate the potential contribution of such land use on methane production, field samples were studied in vitro for the potential activity of methanogenic bacteria in unflooded or flooded boreal forest soils, together with lacustrine sediments. From this comparative study, periodically flooded or flooded peats contribute more to methane production than do unflooded peats, soils, and natural lake sediment. The intensity and temporal changes in the activity of methanogenic archaea in the different systems depended on a combination of environmental factors, such as the amount and quality of organic carbon, the water level, and the concentration of oxidizing ions (SO42-, Fe3+). PMID:15782237

  20. Potential merger of ancient lineages in a passerine bird discovered based on evidence from host-specific ectoparasites

    PubMed Central

    Block, Nicholas L; Goodman, Steven M; Hackett, Shannon J; Bates, John M; Raherilalao, Marie J

    2015-01-01

    The merger of formerly isolated lineages is hypothesized to occur in vertebrates under certain conditions. However, despite many demonstrated instances of introgression between taxa in secondary contact, examples of lineage mergers are rare. Preliminary mtDNA sequencing of a Malagasy passerine, Xanthomixis zosterops (Passeriformes: Bernieridae), indicated a possible instance of merging lineages. We tested the hypothesis that X. zosterops lineages are merging by comparing mtDNA sequence and microsatellite data, as well as mtDNA sequence data from host-specific feather lice in the genus Myrsidea (Phthiraptera: Menoponidae). Xanthomixis zosterops comprises four deeply divergent, broadly sympatric, cryptic mtDNA clades that likely began diverging approximately 3.6 million years ago. Despite this level of divergence, the microsatellite data indicate that the X. zosterops mtDNA clades are virtually panmictic. Three major phylogroups of Myrsidea were found, supporting previous allopatry of the X. zosterops clades. In combination, the datasets from X. zosterops and its Myrsidea document a potential merger of previously allopatric lineages that likely date to the Pliocene. This represents the first report of sympatric apparent hybridization among more than two terrestrial vertebrate lineages. Further, the mtDNA phylogeographic pattern of X. zosterops, namely the syntopy of more than two deeply divergent cryptic clades, appears to be a novel scenario among vertebrates. We highlight the value of gathering multiple types of data in phylogeographic studies to contribute to the study of vertebrate speciation. PMID:26380702

  1. Tissue loss (white syndrome) in the coral Montipora capitata is a dynamic disease with multiple host responses and potential causes.

    PubMed

    Work, Thierry M; Russell, Robin; Aeby, Greta S

    2012-11-01

    Tissue loss diseases or white syndromes (WS) are some of the most important coral diseases because they result in significant colony mortality and morbidity, threatening dominant Acroporidae in the Caribbean and Pacific. The causes of WS remain elusive in part because few have examined affected corals at the cellular level. We studied the cellular changes associated with WS over time in a dominant Hawaiian coral, Montipora capitata, and showed that: (i) WS has rapidly progressing (acute) phases mainly associated with ciliates or slowly progressing (chronic) phases mainly associated with helminths or chimeric parasites; (ii) these phases interchanged and waxed and waned; (iii) WS could be a systemic disease associated with chimeric parasitism or a localized disease associated with helminths or ciliates; (iv) corals responded to ciliates mainly with necrosis and to helminths or chimeric parasites with wound repair; (v) mixed infections were uncommon; and (vi) other than cyanobacteria, prokaryotes associated with cell death were not seen. Recognizing potential agents associated with disease at the cellular level and the host response to those agents offers a logical deductive rationale to further explore the role of such agents in the pathogenesis of WS in M. capitata and helps explain manifestation of gross lesions. This approach has broad applicability to the study of the pathogenesis of coral diseases in the field and under experimental settings. PMID:22951746

  2. Tissue loss (white syndrome) in the coral Montipora capitata is a dynamic disease with multiple host responses and potential causes

    USGS Publications Warehouse

    Work, Thierry M.; Russell, Robin; Aeby, Greta S.

    2012-01-01

    Tissue loss diseases or white syndromes (WS) are some of the most important coral diseases because they result in significant colony mortality and morbidity, threatening dominant Acroporidae in the Caribbean and Pacific. The causes of WS remain elusive in part because few have examined affected corals at the cellular level. We studied the cellular changes associated with WS over time in a dominant Hawaiian coral, Montipora capitata, and showed that: (i) WS has rapidly progressing (acute) phases mainly associated with ciliates or slowly progressing (chronic) phases mainly associated with helminths or chimeric parasites; (ii) these phases interchanged and waxed and waned; (iii) WS could be a systemic disease associated with chimeric parasitism or a localized disease associated with helminths or ciliates; (iv) corals responded to ciliates mainly with necrosis and to helminths or chimeric parasites with wound repair; (v) mixed infections were uncommon; and (vi) other than cyanobacteria, prokaryotes associated with cell death were not seen. Recognizing potential agents associated with disease at the cellular level and the host response to those agents offers a logical deductive rationale to further explore the role of such agents in the pathogenesis of WS in M. capitata and helps explain manifestation of gross lesions. This approach has broad applicability to the study of the pathogenesis of coral diseases in the field and under experimental settings.

  3. Host Cell Invasion by TRYPANOSOMA cRUZI Is Potentiated by Activation of Bradykinin B2 Receptors

    PubMed Central

    Scharfstein, Julio; Schmitz, Veronica; Morandi, Veronica; Capella, Marcia M. A.; Lima, Ana Paula C. A.; Morrot, Alexandre; Juliano, Luiz; Müller-Esterl, Werner

    2000-01-01

    The parasitic protozoan Trypanosoma cruzi employs multiple molecular strategies to invade a broad range of nonphagocytic cells. Here we demonstrate that the invasion of human primary umbilical vein endothelial cells (HUVECs) or Chinese hamster ovary (CHO) cells overexpressing the B2 type of bradykinin receptor (CHO-B2R) by tissue culture trypomastigotes is subtly modulated by the combined activities of kininogens, kininogenases, and kinin-degrading peptidases. The presence of captopril, an inhibitor of bradykinin degradation by kininase II, drastically potentiated parasitic invasion of HUVECs and CHO-B2R, but not of mock-transfected CHO cells, whereas the B2R antagonist HOE 140 or monoclonal antibody MBK3 to bradykinin blocked these effects. Invasion competence correlated with the parasites' ability to liberate the short-lived kinins from cell-bound kininogen and to elicit vigorous intracellular free calcium ([Ca2+]i) transients through B2R. Invasion was impaired by membrane-permeable cysteine proteinase inhibitors such as Z-(SBz)Cys-Phe-CHN2 but not by the hydrophilic inhibitor 1-trans-epoxysuccinyl-l-leucyl-amido-(4-guanidino) butane or cystatin C, suggesting that kinin release is confined to secluded spaces formed by juxtaposition of host cell and parasite plasma membranes. Analysis of trypomastigote transfectants expressing various cysteine proteinase isoforms showed that invasion competence is linked to the kinin releasing activity of cruzipain, herein proposed as a factor of virulence in Chagas' disease. PMID:11067878

  4. Sedimentological cross section of Cambro-Ordovician carbonate shelf (Knox group, Conassauga Formation) in central Alabama: facies, diagenesis, potential reservoirs

    SciTech Connect

    Sternbach, L.R.

    1984-04-01

    Cambro-Ordovician thrust-imbricated carbonates in central Alabama are the focus of renewed exploration interest. Samples from east-west-trending core holes within the surface-most thrust plates reconstruct the carbonate shelf and shelf-edge facies before deformation. The Upper Cambrian shelf margin now is in the subsurface of Talledega County; coeval dolostones in the western part of the state represent the former shelf interior. Rock analogs to former environments include the following. (1) Barrier shoals (Conasauga Formation) - dark colored, partially dolomitized ooid and skeletal grainstones. (2) Submerged back-barrier and offshelf dolomitized sediments (lower Knox Group) - western belt: finely crystalline algal thrombolites, fenestral dolopelmicrites, rippled beds; eastern belt: finely laminated dolostones, slope-derived pebbles and graded beds. (3) Tidal flats (upper Knox Group) - light-colored, crystalline dolostones, dolomitized pellet grainstones, algal laminites, pseudomorphs after sulfates and early diagenetic chertification. (4) Former emergent shelf -(Knox unconformity)-pelmicrite, skeletal wackestones, erosional chert pebble conglomerate. Multiple possibilities for hydrocarbon reservoirs appear throughout the sequence. Vuggy and intercrystalline dolostone porosity is primarily in the lower Knox formations. Primary interparticle pores are retained in lower Knox algal buildups. Breccia porosity occurs in the strata below the Knox unconformity through solution of the underlying Knox Group. Fractures in the subsurface are believed to enhance permeability in all porosity types.

  5. Sedimentological cross section of Cambro-Ordovician carbonate shelf (Knox group, Conasauga Formation) in central Alabama: facies, diagenesis, potential reservoirs

    SciTech Connect

    Sternbach, L.R.

    1984-04-01

    Cambro-Ordovician thrust-imbricated carbonates in central Alabama are the focus of renewed exploration interest. Samples from east-west-trending core holes within the surface-most thrust plates reconstruct the carbonate shelf and shelf-edge facies before deformation. The Upper Cambrian shelf margin now is in the subsurface of Talledega County; coeval dolostones in the western part of the state represent the former shelf interior. Rock analogs to former environments include the following. (1) Barrier shoals (Conasauga Formation) - dark colored, partially dolomitized ooid and skeletal grainstones. (2) Submerged back-barrier and offshelf dolomitized sediments (lower Knox Group) - western belt: finely crystalline algal thrombolites, fenestral dolopelmicrites, rippled beds; eastern belt: finely laminated dolostones, slope-derived pebbles and graded beds. (3) Tidal flats (upper Knox Group) - light-colored, crystalline dolostones, dolomitized pellet grainstones, algal laminites, pseudomorphs after sulfates and early diagenetic chertification. (4) Former emergent shelf -(Knox unconformity)-pelmicrite, skeletal wackestones, erosional chert pebble conglomerate. Multiple possibilities for hydrocarbon reservoirs appear throughout the sequence. Vuggy and intercrystalline dolostone porosity is primarily in the lower Knox formations. Primary interparticle pores are retained in lower Knox algal buildups. Breccia porosity occurs in the strata below the Knox unconformity through solution of the underlying Knox Group. Fractures in the subsurface are believed to enhance permeability in all porosity types.

  6. Reservoir Model of the Jacksonburg-Stringtown Oil Field; Northwestern West Virginia: Potential for Miscible Carbon Dioxide Enhanced Oil Recovery

    NASA Astrophysics Data System (ADS)

    Bergerud, Blake

    Located in northwestern West Virginia, the Jacksonburg-Stringtown field has produced over 22 million barrels of oil (MMBO) since its discovery in 1895. The primary producing interval within the field is the Late Devonian Gordon Stray. Log analysis shows this formation to represent an estuarine depositional system. Four subunits within the formation are defined based on depositional framework: barrier sand, central bay shale, estuarine channels, and fluvial channel subunits. RHOmaa/Umaa lithological composition plots support the conclusion of a marine-influenced estuarine depositional framework. Structural and isopach maps generated with data from 73 local wells reveal a northeast-southwest trending sand deposit of 15-35 foot thickness, which is interpreted as the depocenter for the incised valley of the Gordon Stray. Analysis of formation horizon maps shows that the reservoir is synclinal and, as a result, contains a stratigraphic trap as opposed to the more common structural traps found in the immediate area. Porosity and pore-feet distribution maps indicate high porosity regions in southern regions of the field and high pore volume in northern areas. A miscible CO2 flood model estimates that an additional 7.3 MMBO could be recovered from the high porosity regions in the southern half of the field. The Jacksonburg-Stringtown field is well-suited for enhanced oil recovery and/or geologic CO2 sequestration.

  7. Hydro-geophysical characterization for groundwater resources potential of fractured limestone reservoirs in Amdoun Monts (North-western Tunisia)

    NASA Astrophysics Data System (ADS)

    Redhaounia, Belgacem; Bédir, Mourad; Gabtni, Hakim; Batobo, Ountsche Ilondo; Dhaoui, Mohamed; Chabaane, Achref; Khomsi, Sami

    2016-05-01

    This study has led to the identification of the Upper Cretaceous and Lower Eocene (Abiod, Boudabbous/El Gueria Formations) fractured and karstic aquifers in the Amdoun region (Northwestern Tunisia). Geological information (litho-stratigraphy and fractures network study) and geophysical (gravity, wells analysis, seismic reflection, Electrical Resistivity Tomography (ERT)) investigations performed in the area have highlighted, with some detail, images of structures of carbonate aquifers near anticline flanks and along perched synclines. Some factors such as fracture intensity, karsts evolution and structural position have an important influence on the hydrologic productivity of Abiod and Boudabbous/El Gueria reservoirs. Different methodologies were used to characterize the geological and hydro-geological perched aquifers and produce the 3D geo-electrical model of near surface karstic features and cavities of the carbonate limestone in the Aïn Sallem site. This study integrates the geological and geophysical information available and can serve as a representative example in the description of the most important hydraulic reserves in the North-western Tunisia.

  8. [Distribution characteristics and potential risks of phenols in the rainy season surface water from Three Gorges Reservoir].

    PubMed

    Wu, Zheng-yong; Zhao, Gao-feng; Zhou, Huai-dong; Li, Ke-lin; Li, Kun; Zhang, Pan-wei

    2012-08-01

    Forty-seven surface water samples were collected from the main stream and 22 tributaries in area of the Three Gorges Reservoir, 15 phenolic compounds in these samples were analyzed using GC/MS. The results showed that the concentrations of phenolic compounds in the samples from the main stream and tributaries were 52.47 ng x L(-1) and 87.99 ng x L(-1), respectively. The concentrations of non-chlorinated phenols were higher than those of chlorinated phenols in the main stream and tributaries, and so the non-chlorinated phenols were the predominant compounds in these surface water samples. Phenol, o-cresol and 2-nitrophenol were the predominant compounds accounted for 79.1%, 3.7% and 3.6% in the samples from the main stream, respectively. Phenol, o-cresol, 2,6-dichlorophenol and 2-nitrophenol were the main compounds accounted for 77.5%, 5.4%, 3.8% and 2.2% in the samples from the tributaries, respectively. As compared the concentrations of phenol and 2-nitrophenol with the standard limits in The National Environmental Health Risk List, the levels of phenol and 2-nitrophenol were much lower than the standard limits, suggesting negligible risk of phenol and 2-nitrophenol in these samples. PMID:23213876

  9. Carbonate petroleum reservoirs

    SciTech Connect

    Roehl, P.O.; Choquette, P.W.

    1985-01-01

    This book presents papers on the geology of petroleum deposits. Topics considered include diagenesis, porosity, dolomite reservoirs, deposition, reservoir rock, reefs, morphology, fracture-controlled production, Cenozoic reservoirs, Mesozoic reservoirs, and Paleozoic reservoirs.

  10. Acanthamoeba castellanii of the T4 genotype is a potential environmental host for Enterobacter aerogenes and Aeromonas hydrophila

    PubMed Central

    2013-01-01

    . Because cysts can be airborne, these findings suggest that Acanthamoeba is a potential vector in the transmission of A. hydrophila and E. aerogenes to susceptible hosts. PMID:23742105

  11. The gastrointestinal tract as a potential infection reservoir of digital dermatitis-associated treponemes in beef cattle and sheep.

    PubMed

    Sullivan, L E; Carter, S D; Duncan, J S; Grove-White, D H; Angell, J W; Evans, N J

    2015-11-01

    Digital dermatitis (DD) is an important cause of lameness in dairy cattle worldwide. It has now been reported in beef cattle and also sheep (contagious ovine digital dermatitis [CODD]). Three Treponema phylogroups are consistently isolated from lesions, Treponema medium-like, Treponema phagedenis-like, and Treponema pedis. The gastrointestinal (GI) tract and feces are suggested sites of treponemal infection in dairy cattle; however, isolation of DD-associated treponemes from these areas has previously failed. This study surveyed gingival tissues, rectal tissues, and feces of beef cattle and sheep for the molecular presence (PCR) and isolation of the three cultivable DD-treponeme phylogroups. Of the sheep gingival (n = 40) and rectal (n = 40) tissues, 1/40 gingival tissues was positive for DD-associated treponemes (T. pedis), as were 3/40 rectal tissues (one containing T. medium-like and two containing T. pedis). No DD-associated treponeme DNA was amplified from beef cattle rectal tissues (n = 40); however, 4/40 beef gingival tissues were positive for DD-associated treponemes (all containing T. phagedenis-like). A T. phagedenis-like DD-associated treponeme was isolated from the rectal tissue of a CODD symptomatic sheep. Beef cattle (n = 41) and sheep (n = 79) feces failed to amplify DD-associated Treponema DNA. Twenty-two treponemes were isolated from sheep feces; however, upon phylogenetic analysis, these clustered with the considered nonpathogenic treponemes. This study detected DD-associated treponemes in the GI tract tissues of sheep and beef cattle and successfully isolated a DD-associated treponeme from ruminant rectal tissue. This gives evidence that the GI tract is an important infection reservoir of DD-associated treponemes in multiple DD-infected species. PMID:26276110

  12. The Gastrointestinal Tract as a Potential Infection Reservoir of Digital Dermatitis-Associated Treponemes in Beef Cattle and Sheep

    PubMed Central

    Carter, S. D.; Duncan, J. S.; Grove-White, D. H.; Angell, J. W.; Evans, N. J.

    2015-01-01

    Digital dermatitis (DD) is an important cause of lameness in dairy cattle worldwide. It has now been reported in beef cattle and also sheep (contagious ovine digital dermatitis [CODD]). Three Treponema phylogroups are consistently isolated from lesions, Treponema medium-like, Treponema phagedenis-like, and Treponema pedis. The gastrointestinal (GI) tract and feces are suggested sites of treponemal infection in dairy cattle; however, isolation of DD-associated treponemes from these areas has previously failed. This study surveyed gingival tissues, rectal tissues, and feces of beef cattle and sheep for the molecular presence (PCR) and isolation of the three cultivable DD-treponeme phylogroups. Of the sheep gingival (n = 40) and rectal (n = 40) tissues, 1/40 gingival tissues was positive for DD-associated treponemes (T. pedis), as were 3/40 rectal tissues (one containing T. medium-like and two containing T. pedis). No DD-associated treponeme DNA was amplified from beef cattle rectal tissues (n = 40); however, 4/40 beef gingival tissues were positive for DD-associated treponemes (all containing T. phagedenis-like). A T. phagedenis-like DD-associated treponeme was isolated from the rectal tissue of a CODD symptomatic sheep. Beef cattle (n = 41) and sheep (n = 79) feces failed to amplify DD-associated Treponema DNA. Twenty-two treponemes were isolated from sheep feces; however, upon phylogenetic analysis, these clustered with the considered nonpathogenic treponemes. This study detected DD-associated treponemes in the GI tract tissues of sheep and beef cattle and successfully isolated a DD-associated treponeme from ruminant rectal tissue. This gives evidence that the GI tract is an important infection reservoir of DD-associated treponemes in multiple DD-infected species. PMID:26276110

  13. [Seasonal variation of cyanobacteria and its potential relationship with key environmental factors in Xiaojiang backwater area, Three Gorges Reservoir].

    PubMed

    Li, Zhe; Guo, Jing-song; Fang, Fang; Gao, Xu; Sheng, Jin-ping; Zhou, Hong; Long, Man

    2010-02-01

    Eutrophication and algal blooms occurred in the backwater areas of tributaries in Three Gorges Reservoir were the hot ecological issues in recent years. A one year field survey on cyanobacteria was put forward from May, 2007 to May, 2008 in Xiaojiang backwater area. 15 genera and 40 species of cyanophyta were detected. Mean value of cyanobacterial cell density was (23.50 +/- 10.30) x 10(5) cells x L(-1), i.e., 24.1% in the algal community, while the biomass was (768.70 +/- 287.40) microg x L(-1) which was 8.9% in the total biomass of algal community. Seasonal variation of cyanobacteria was apparent. Generally, cyanobacteria bloom occurred during late spring and early summer. Its abundance decreased after summer and reached the minimum level in winter. Anabaena, Aphanizomenon, Microcystis, Merismopedia and Phormidium were the common cynaobacterial genera. The cumulated cell density of these five genera of cyanobacteria above accounted up to 79.1% in the total cell density of cyanobacteria, while that of biomass accounted up to 77.6%. Spearman correlation analysis among the cell density, biomass as well as the key environmental factors indicated that utilization of inorganic nitrogen and phosphorus for anabolism was evident; however, nitrate would be the major nitrogen source for cyanobacteria. Moreover, increase of temperature and decrease of depth of euphotic zone had a significant effect on the abundance of cyanobacteria. According to co-analysis of hydrology and rainfall data in the whole year circle, it was found that nitrogen and phosphorus were input by the heavy rain and surface runoff with inorganic sediments, offering the enriched nutrients in water column. Meanwhile, turbidity increased by the inorganic suspended sediments decreased the depth of euphotic zone. The physiological advantage of cyanobacteria in low light and high turbidity environment might be the cause of cyanobacteria bloom in Xiaojiang backwater area. PMID:20391694

  14. Ecological Model to Predict Potential Habitats of Oncomelania hupensis, the Intermediate Host of Schistosoma japonicum in the Mountainous Regions, China

    PubMed Central

    Zhu, Hong-Ru; Liu, Lu; Zhou, Xiao-Nong; Yang, Guo-Jing

    2015-01-01

    Background Schistosomiasis japonica is a parasitic disease that remains endemic in seven provinces in the People’s Republic of China (P.R. China). One of the most important measures in the process of schistosomiasis elimination in P.R. China is control of Oncomelania hupensis, the unique intermediate host snail of Schistosoma japonicum. Compared with plains/swamp and lake regions, the hilly/mountainous regions of schistosomiasis endemic areas are more complicated, which makes the snail survey difficult to conduct precisely and efficiently. There is a pressing call to identify the snail habitats of mountainous regions in an efficient and cost-effective manner. Methods Twelve out of 56 administrative villages distributed with O. hupensis in Eryuan, Yunnan Province, were randomly selected to set up the ecological model. Thirty out of the rest of 78 villages (villages selected for building model were excluded from the villages for validation) in Eryuan and 30 out of 89 villages in Midu, Yunnan Province were selected via a chessboard method for model validation, respectively. Nine-year-average Normalized Difference Vegetation Index (NDVI) and Land Surface Temperature (LST) as well as Digital Elevation Model (DEM) covering Eryuan and Midu were extracted from MODIS and ASTER satellite images, respectively. Slope, elevation and the distance from every village to its nearest stream were derived from DEM. Suitable survival environment conditions for snails were defined by comparing historical snail presence data and remote sensing derived images. According to the suitable conditions for snails, environment factors, i.e. NDVI, LST, elevation, slope and the distance from every village to its nearest stream, were integrated into an ecological niche model to predict O. hupensis potential habitats in Eryuan and Midu. The evaluation of the model was assessed by comparing the model prediction and field investigation. Then, the consistency rate of model validation was calculated

  15. Characterization of Elastic Properties in Basalts of the Western Snake River Plain, Idaho: a Mechanostratigraphic Analysis of a Potential Geothermal Reservoir

    NASA Astrophysics Data System (ADS)

    Kessler, J. A.; Evans, J. P.; Schmitt, D. R.; Shervais, J. W.

    2013-12-01

    The western Snake River Plain is a region of high crustal heat flow and has the potential for commercial geothermal energy development. High-temperature crystalline reservoirs commonly have connected fracture networks and other discontinuities that provide the primary fluid storage and permeability (Type I fractures). A borehole was drilled during the DOE/ICDP Snake River Scientific Drilling Program near Mountain Home, Idaho to a depth of ~1,800 m (6,000 ft) with 85 - 90% slimhole core recovery to assess the potential for geothermal energy development. A high-temperature artesian flow zone was encountered in basalt at a depth of 1,745 m (5,726 ft) in the MH-2 borehole with fluid temperatures above 140°C (240°F). Analysis of geomechanical behavior of rocks requires an understanding of basic physical and elastic properties under dynamic in-situ stress conditions. Here we conduct unconfined uniaxial compressive stress experiments on core samples to measure static elastic properties and compressive strength over a ~305 m (1,000 ft) interval of the borehole above and including the geothermal reservoir. Acoustic velocities are measured under pressure and temperature scenarios to calculate dynamic elastic properties and describe the anisotropy of elastic moduli and compressive strength. Dynamic elastic properties are calculated from dipole sonic borehole log data and compare the results to the previous dynamic and static interpretations. The comparison demonstrates that the calculation of dynamic elastic properties from borehole data is an effective method to interpret and describe mechanical stratigraphy and elastic properties in the case that core is not available for analysis in this area. Natural fractures, induced fractures, and breakouts are mapped in acoustic televiewer data. Fracture density is calculated and compared to lithological and mechanical stratigraphy, defined by the physical properties, elastic properties, and strength measurements. The stratigraphic

  16. 3D surface roughness recreation and data processing of granitic rocks and claystones, potential host rocks for radioactive waste disposal

    NASA Astrophysics Data System (ADS)

    Buocz, Ildikó; Török, Ákos; Rozgonyi-Boissinot, Nikoletta

    2015-04-01

    The determination and modelling of the stability of rock slopes, tunnels, or underground spaces, i.e. radioactive waste disposal facilities, is an important task in engineering. The appropriate estimation of the mechanical parameters for a realistic description of the behaviour of rocks results in higher safety and more economic design. The failure of stability is primarily due to the shear failure of the rock masses along fractures and joints: therefore the correct determination of the shear strength is crucial. One of the most important parameters influencing the shear strength along rock joints is their surface roughness. Although the quantification of surface roughness has been an open question during the past century, several attempts have been made, starting with 2D and continuing with 3D measurements, to provide engineers with a method for determining shear strength numerically. As technology evolved, the 3D methods became more popular and several scientists started to investigate the surface properties through laser scanning and different photogrammetrical methods. This paper shows a photogrammetric method for the 3D digital recreation of joint surfaces of granitic rock and claystone, both potential host rocks for radioactive waste disposal. The rocks derived from Bátaapáti (South Hungary) and Mont Terri (North Switzerland) respectively. The samples are laboratory scaled specimens with an areal size of 50x50 mm. The software used is called ShapeMetrix3D, developed by 3GSM GmbH in Austria. The major steps of the creation of the 3D picture are presented, as well as the following data processing which leads to the quantification of the 3D surface roughness.

  17. Cell Wall Biomolecular Composition Plays a Potential Role in the Host Type II Resistance to Fusarium Head Blight in Wheat

    PubMed Central

    Lahlali, Rachid; Kumar, Saroj; Wang, Lipu; Forseille, Li; Sylvain, Nicole; Korbas, Malgorzata; Muir, David; Swerhone, George; Lawrence, John R.; Fobert, Pierre R.; Peng, Gary; Karunakaran, Chithra

    2016-01-01

    Fusarium head blight (FHB) is a serious disease of wheat worldwide. Cultivar resistance to FHB depends on biochemical factors that confine the pathogen spread in spikes. Breeding for cultivar resistance is considered the most practical way to manage this disease. In this study, different spectroscopy and microscopy techniques were applied to discriminate resistance in wheat genotypes against FHB. Synchrotron-based spectroscopy and imaging techniques, including focal plane array infrared and X-ray fluorescence (XRF) spectroscopy were used to understand changes in biochemical and nutrients in rachis following FHB infection. Sumai3 and Muchmore were used to represent resistant and susceptible cultivars to FHB, respectively, in this study. The histological comparison of rachis showed substantial differences in the cell wall thickness between the cultivars after infection. Synchrotron-based infrared imaging emphasized substantial difference in biochemical composition of rachis samples between the two cultivars prior to visible symptoms; in the resistant Sumai3, infrared bands representing lignin and hemicellulose were stronger and more persistent compared to the susceptible cultivar. These bands may be the candidates of biochemical markers for FHB resistance. Focal plane array infrared imaging (FPA) spectra from the rachis epidermis and vascular bundles revealed a new band (1710 cm−1) related to the oxidative stress on the susceptible cultivar only. XRF spectroscopy data revealed differences in nutrients composition between cultivars, and between controls and inoculated samples, with substantial increases observed for Ca, K, Mn, Fe, Zn, and Si in the resistant cultivar. These nutrients are related to cell wall stability, metabolic process, and plant defense mechanisms such as lignification pathway and callose deposition. The combination of cell wall composition and lignification plays a role in the mechanism of type II host resistance to FHB. Biochemical profiling

  18. Cell Wall Biomolecular Composition Plays a Potential Role in the Host Type II Resistance to Fusarium Head Blight in Wheat.

    PubMed

    Lahlali, Rachid; Kumar, Saroj; Wang, Lipu; Forseille, Li; Sylvain, Nicole; Korbas, Malgorzata; Muir, David; Swerhone, George; Lawrence, John R; Fobert, Pierre R; Peng, Gary; Karunakaran, Chithra

    2016-01-01

    Fusarium head blight (FHB) is a serious disease of wheat worldwide. Cultivar resistance to FHB depends on biochemical factors that confine the pathogen spread in spikes. Breeding for cultivar resistance is considered the most practical way to manage this disease. In this study, different spectroscopy and microscopy techniques were applied to discriminate resistance in wheat genotypes against FHB. Synchrotron-based spectroscopy and imaging techniques, including focal plane array infrared and X-ray fluorescence (XRF) spectroscopy were used to understand changes in biochemical and nutrients in rachis following FHB infection. Sumai3 and Muchmore were used to represent resistant and susceptible cultivars to FHB, respectively, in this study. The histological comparison of rachis showed substantial differences in the cell wall thickness between the cultivars after infection. Synchrotron-based infrared imaging emphasized substantial difference in biochemical composition of rachis samples between the two cultivars prior to visible symptoms; in the resistant Sumai3, infrared bands representing lignin and hemicellulose were stronger and more persistent compared to the susceptible cultivar. These bands may be the candidates of biochemical markers for FHB resistance. Focal plane array infrared imaging (FPA) spectra from the rachis epidermis and vascular bundles revealed a new band (1710 cm(-1)) related to the oxidative stress on the susceptible cultivar only. XRF spectroscopy data revealed differences in nutrients composition between cultivars, and between controls and inoculated samples, with substantial increases observed for Ca, K, Mn, Fe, Zn, and Si in the resistant cultivar. These nutrients are related to cell wall stability, metabolic process, and plant defense mechanisms such as lignification pathway and callose deposition. The combination of cell wall composition and lignification plays a role in the mechanism of type II host resistance to FHB. Biochemical profiling

  19. Forced Resurgence and Targeting of Intracellular Uropathogenic Escherichia coli Reservoirs

    PubMed Central

    Blango, Matthew G.; Ott, Elizabeth M.; Erman, Andreja; Veranic, Peter; Mulvey, Matthew A.

    2014-01-01

    Intracellular quiescent reservoirs of uropathogenic Escherichia coli (UPEC), which can seed the bladder mucosa during the acute phase of a urinary tract infection (UTI), are protected from antibiotic treatments and are extremely difficult to eliminate. These reservoirs are a potential source for recurrent UTIs that affect millions annually. Here, using murine infection models and the bladder cell exfoliant chitosan, we demonstrate that intracellular UPEC populations shift within the stratified layers of the urothelium during the course of a UTI. Following invasion of the terminally differentiated superficial layer of epithelial cells that line the bladder lumen, UPEC can multiply and disseminate, eventually establishing reservoirs within underlying immature host cells. If given access, UPEC can invade the superficial and immature bladder cells equally well. As infected immature host cells differentiate and migrate towards the apical surface of the bladder, UPEC can reinitiate growth and discharge into the bladder lumen. By inducing the exfoliation of the superficial layers of the urothelium, chitosan stimulates rapid regenerative processes and the reactivation and efflux of quiescent intracellular UPEC reservoirs. When combined with antibiotics, chitosan treatment significantly reduces bacterial loads within the bladder and may therefore be of therapeutic value to individuals with chronic, recurrent UTIs. PMID:24667805

  20. Mycobacterium bovis: Wildlife reservoirs and spillover hosts

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Mycobacterium bovis is the cause of tuberculosis in animals and sometimes humans. Many countries have long standing programs to eradicate tuberculosis in livestock, principally cattle. As disease prevalence in cattle decreases, eradication efforts are impeded by passage of M. bovis from wildlife res...

  1. Mycobacterium bovis: Characteristics of wildlife reservoir hosts

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Mycobacterium bovis is the cause of tuberculosis in animals and sometimes humans. Many countries have long-standing programs to eradicate tuberculosis in livestock, principally cattle. As disease prevalence in cattle decreases, eradication efforts are impeded by passage of M. bovis from wildlife to ...

  2. Potential Impacts of Leakage from Black Rock Reservoir on the Hanford Site Unconfined Aquifer: Initial Hypothetical Simulations of Flow and Contaminant Transport

    SciTech Connect

    Freedman, Vicky L.

    2007-03-09

    Initial scoping calculations of the unconfined aquifer at the Hanford Site were carried out for the U.S. Bureau of Reclamation (USBR) to investi¬gate the potential impacts on the Hanford unconfined aquifer that would result from leakage from the proposed Black Rock Reservoir to the west. Although impacts on groundwater flow and contaminant transport were quantified based on numerical simulation results, the investigation represented a quali¬tative assessment of the potential lateral recharge that could result in adverse effects on the aquifer. Because the magnitude of the potential leakage is unknown, hypothetical bounding calculations were performed. When a quantitative analysis of the magnitude of the potential recharge from Black Rock Reservoir is obtained, the hydrologic impacts analysis will be revisited. The analysis presented in this report represent initial bounding calculations. A maximum lateral recharge (i.e., upland flux) was determined in the first part of this study by executing steady-state flow simulations that raised the water table no higher than the elevation attained in the Central Plateau during the Hanford operational period. This metric was selected because it assumed a maximum remobilization of contaminants that existed under previous fully saturated conditions. Three steady-state flow fields were then used to analyze impacts to transient contaminant transport: a maximum recharge (27,000 acre-ft/yr), a no additional flux (365 acre-ft/yr), and an intermediate recharge case (16,000 acre-ft/yr). The transport behavior of four radionuclides was assessed for a 300 year simula¬tion period with the three flow fields. The four radionuclides are current contaminants of concern (COCs) in the Central Plateau and include tritium, iodine-129, technetium-99, and uranium-238. Transient flow and transport simulations were used to establish hypothetical concentration distributions in the subsurface. Using the simulated concentration distributions in 2005

  3. Off-fault shear failure potential enhanced by high-stiff/low-permeable damage zone during fluid injection in porous reservoirs

    NASA Astrophysics Data System (ADS)

    Rohmer, J.; Nguyen, T. K.; Torabi, A.

    2015-09-01

    Several studies have focused on the role of damage zone (DZ) on the hydromechanical behaviour of faults by assuming a fractured DZ (i.e. low stiffness/high permeability). Yet, this vision may not be valid in all geological settings, in particular, in high-porosity reservoirs as targeted by several underground exploitations. We investigate the impact of a high-stiff/low-permeable DZ on the shear reactivation of a blind, undetectable normal fault (1 km long, ≤10 m offset), with a 0.5 m thick low-porosity/permeability fault core during fluid injection into a high-porosity reservoir. The spatial distribution of effective properties (elastic moduli, Biot's coefficients and permeability) of DZ including deformation bands (DB; elliptic inclusions) and intact rock were derived using upscaling analytical expressions. The influence of DZ on the hydromechanical behaviour of the fault zone was numerically explored using 2-D plane-strain finite-element simulations within the framework of fully saturated isothermal porous media by accounting for an orthotropic elastic rheology. The numerical results showed that the presence of DB plays a protective role by reducing the potential for shear reactivation inside the fault core. On the other hand, they favour shear failure in the vicinity of the fault core (off-fault damage) by accelerating the decrease of the minimum principal effective stress while limiting the decrease of the maximum one. This behaviour is strongly enhanced by the fault-parallel DZ effective stiffness, but limited by the combined effect of fault-normal DZ effective permeability and of the Biot's coefficients. This can have implications for the location and size of aftershocks during fault reactivation.

  4. Paonia Reservoir Sediment Management

    NASA Astrophysics Data System (ADS)

    Kimbrel, S.; Collins, K.; Williams, C.

    2014-12-01

    Paonia Dam and Reservoir are located on Muddy Creek, a tributary of the North Fork Gunnison River in western Colorado. Since dam closure in 1962, the 2002 survey estimates an annual sedimentation rate of 153,000 m3/y, resulting in a 25% loss of total reservoir capacity. Long before sediment levels completely fill the reservoir, the outlet works have recently plugged with sediment and debris, adversely impacting operations, and emphasizing the urgency of formulating an effective sediment management plan. Starting in 2010-2011, operations were changed to lower the reservoir and flush sediment through the outlet works in early spring before filling the pool for irrigation. Even though the flushing strategy through the long, narrow reservoir (~5 km long and 0.3 km wide) has prevented outlet works plugging, a long term plan is needed to manage inflowing and deposited sediment more efficiently. Reclamation's Sedimentation and River Hydraulics Group is leading an effort to study the past and current sediment issues at Paonia Dam and Reservoir, evaluate feasible sediment management alternatives, and formulate a plan for future operations and monitoring. The study is building on previously collected data and the existing knowledge base to develop a comprehensive, sustainable sediment management plan. The study is being executed in three phases: Phase 1 consisted of an initial site visit to map and sample existing reservoir bottom sediments, a preliminary site evaluation upstream and downstream of the dam, and establishment of time-lapse photo sites and taking initial ground-based photos. Phase 2 includes a bathymetric survey of entire reservoir and 11 km of the river downstream of the dam, continuous suspended sediment monitoring upstream and downstream of the reservoir, and collection of additional core samples of reservoir bottom sediments. Phase 3 involves the evaluation of current and past operations and sediment management practices, evaluate feasible sediment

  5. Modeling Lake Turkana Hydrology: Evaluating the potential hydrological impact of Gibe III reservoir on the Lake Turkana water levels using multi-source satellite data

    NASA Astrophysics Data System (ADS)

    Velpuri, N.; Senay, G. B.

    2012-12-01

    Ethiopia is currently building the Gibe III hydroelectric dam on the Omo River, which supplies >80% of the inflows to Lake Turkana, Kenya. On completion, the Gibe III dam will be the tallest dam in Africa (height of 241 m) with a storage capacity of 14.5 billion m3. Arguably, this is one of the most controversial hydro-power projects in the region because the nature of interactions and potential impacts of the dam regulated flows on Lake Turkana are not well understood due to its remote location and unavailability of reliable in situ hydrological datasets. In this research, we used a calibrated multi-source satellite data-driven water balance model for Lake Turkana that takes into account 12 years (1998-2009) of satellite rainfall, model routed runoff, lake/reservoir evapotranspiration, direct rain on lakes/reservoirs and releases from the dam to compute lake water levels. The model was used to evaluate the impact of the Gibe III dam using three different simple but robust approaches - a historical approach; a rainfall based sampling approach; and a non-parametric bootstrap resampling approach to generate rainfall-runoff scenarios. Modelling results indicate that, on average, the reservoir would take up to 8-10 months to reach minimum operation level of 201 m (initial impoundment period). During this period, the dam would regulate the lake inflows up to 50% and as a result the lake level would drop up to 2 m. However, after the initial impoundment period, due to releases from the dam, the rate of lake inflows would be around 10 m3/s less when compared to the rate without Gibe III (650 m3/s). Due to this, the lake levels will decline on average 1.5 m (<1 m to >3 m). Over the entire modeling period including the initial period of impoundment, the average rate of lake inflows due to Gibe III dam was estimated to be 500 m3/s. Results indicated that dam would also moderate the seasonal fluctuations in the lake. Areas along the Lake Turkana shoreline that are vulnerable

  6. Modeling CO2 Sequestration in Saline Aquifer and Depleted Oil Reservoir To Evaluate Regional CO2 Sequestration Potential of Ozark Plateau Aquifer System, South-Central Kansas

    SciTech Connect

    Watney, W. Lynn; Rush, Jason; Raney, Jennifer

    2014-09-30

    1. Drilled, cored, and logged three wells to the basement and collecting more than 2,700 ft of conventional core; obtained 20 mi2 of multicomponent 3D seismic imaging and merged and reprocessed more than 125 mi2 of existing 3D seismic data for use in modeling CO2- EOR oil recovery and CO2 storage in five oil fields in southern Kansas. 2. Determined the technical feasibility of injecting and sequestering CO2 in a set of four depleted oil reservoirs in the Cutter, Pleasant Prairie South, Eubank, and Shuck fields in southwest Kansas; of concurrently recovering oil from those fields; and of quantifying the volumes of CO2 sequestered and oil recovered during the process. 3. Formed a consortium of six oil operating companies, five of which own and operate the four fields. The consortium became part of the Southwest Kansas CO2-EOR Initiative for the purpose of sharing data, knowledge, and interest in understanding the potential for CO2-EOR in Kansas. 4. Built a regional well database covering 30,000 mi2 and containing stratigraphic tops from ~90,000 wells; correlated 30 major stratigraphic horizons; digitized key wells, including wireline logs and sample logs; and analyzed more than 3,000 drill stem tests to establish that fluid levels in deep aquifers below the Permian evaporites are not connected to the surface and therefore pressures are not hydrostatic. Connectivity with the surface aquifers is lacking because shale aquitards and impermeable evaporite layers consist of both halite and anhydrite. 5. Developed extensive web applications and an interactive mapping system that do the following: a. Facilitate access to a wide array of data obtained in the study, including core descriptions and analyses, sample logs, digital (LAS) well logs, seismic data, gravity and magnetics maps, structural and stratigraphic maps, inferred fault traces, earthquakes, Class I and II disposal wells, and surface lineaments. b. Provide real-time analysis of the project dataset, including

  7. Novel high throughput pooled shRNA screening identifies NQO1 as a potential drug target for host directed therapy for tuberculosis

    PubMed Central

    Li, Qing; Karim, Ahmad F.; Ding, Xuedong; Das, Biswajit; Dobrowolski, Curtis; Gibson, Richard M.; Quiñones-Mateu, Miguel E.; Karn, Jonathan; Rojas, Roxana E.

    2016-01-01

    Chemical regulation of macrophage function is one key strategy for developing host-directed adjuvant therapies for tuberculosis (TB). A critical step to develop these therapies is the identification and characterization of specific macrophage molecules and pathways with a high potential to serve as drug targets. Using a barcoded lentivirus-based pooled short-hairpin RNA (shRNA) library combined with next generation sequencing, we identified 205 silenced host genes highly enriched in mycobacteria-resistant macrophages. Twenty-one of these “hits” belonged to the oxidoreductase functional category. NAD(P)H:quinone oxidoreductase 1 (NQO1) was the top oxidoreductase “hit”. NQO1 expression was increased after mycobacterial infection, and NQO1 knockdown increased macrophage differentiation, NF-κB activation, and the secretion of pro-inflammatory cytokines TNF-α and IL-1β in response to infection. This suggests that mycobacteria hijacks NQO1 to down-regulate pro-inflammatory and anti-bacterial functions. The competitive inhibitor of NQO1 dicoumarol synergized with rifampin to promote intracellular killing of mycobacteria. Thus, NQO1 is a new host target in mycobacterial infection that could potentially be exploited to increase antibiotic efficacy in vivo. Our findings also suggest that pooled shRNA libraries could be valuable tools for genome-wide screening in the search for novel druggable host targets for adjunctive TB therapies. PMID:27297123

  8. The high susceptibility of turkeys to influenza viruses of different origins implies their importance as potential intermediate host

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Several previous reports and our studies show that waterfowl origin influenza virus can be more easily transmitted to domestic turkeys than chickens. Along with wild bird viruses, field data and experimental infection studies indicate turkeys to be better hosts for low pathogenic avian influenza (L...

  9. Feeding Behaviour on Host Plants May Influence Potential Exposure to Bt Maize Pollen of Aglais Urticae Larvae (Lepidoptera, Nymphalidae)

    PubMed Central

    Lang, Andreas; Otto, Mathias

    2015-01-01

    Non-target butterfly larvae may be harmed by feeding on host plants dusted with Bt maize pollen. Feeding patterns of larvae and their utilization of host plants can affect the adverse Bt impact because the maize pollen is distributed unequally on the plant. In a field study, we investigated the feeding of larvae of the Small Tortoiseshell, Aglais urticae, on nettles, Urtica dioica. Young larvae used smaller host plants than older larvae. In general, the position of the larvae was in the top part of the host plant, but older larvae showed a broader vertical distribution on the nettles. Leaf blades and leaf tips were the plant parts most often consumed. Leaf veins were consumed but midribs were fed on to a lesser extent than other plant veins, particularly by young larvae. The feeding behavior of the larvae may increase possible exposure to Bt maize pollen because pollen densities are expected to be higher on the top parts and along leaf veins of nettles. PMID:26463415

  10. Biology and host range of Heterapoderopsis bicallosicollis; a potential biological control agent for Chinese tallow Triadica sebifera

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Chinese tallow, Triadica sebifera, is an invasive weed that infests natural and agricultural areas of the southeastern USA. A candidate for biological control of Chinese tallow has been studied under quarantine conditions. The biology and host range of a primitive leaf feeding beetle, Heterapoderops...

  11. Electronic structure, molecular electrostatic potential and spectral characteristics of pillar[6]arene hosts and their complexes with n-octyltriethylammonium ions.

    PubMed

    Peerannawar, Swarada R; Gejji, Shridhar P

    2012-06-28

    Electronic structure, charge distribution and (1)H NMR in pillar[6]arene (P6) conformers, their diisobutoxy derivatives and their host-guest complexes have been investigated by employing the density functional theory. It has been shown that a P6 conformer obtained by flipping of alternate hydroquinone units turns out to be of lowest energy, owing to the hydrogen bonded network at both rims of the host. As opposed to this, a conformer void of hydrogen bonding interactions has largely been destabilized. The O-HO interactions are analyzed using molecular electrostatic potential topography as a tool. Modification of a P6 host by substituting a diisobutoxy group at reactive phenols (DIBP6) renders rigid pillar-shape architecture to the host in which electron-rich regions are localized within the cavity and near portals. Complexation of n-octyltriethylammonium ions (n-OTEA) with P6 and DIBP6 reveals qualitatively different binding patterns. It has been shown that the conformer in which n-OTEA penetrates from the lower rim of the host and partially encapsulates within the P6 cavity turns out to be 1.4 kJ mol(-1) lower in energy than the complex showing complete guest encapsulation. Host-guest binding patterns, viz. encapsulation or portal interactions, can be distinguished from (1)H NMR chemical shifts. The shielding of ethyl and n-octyl chain protons in an n-OTEA⊂DIBP6 complex points to encapsulation of the guest which has been rationalized from natural bond orbital analyses. These inferences are in consonance with (1)H NMR experiments. PMID:22596047

  12. Delta-Aminolevulinate-Induced Host-Parasite Porphyric Disparity for Selective Photolysis of Transgenic Leishmania in the Phagolysosomes of Mononuclear Phagocytes: a Potential Novel Platform for Vaccine Delivery

    PubMed Central

    Dutta, Sujoy; Chang, Celia; Kolli, Bala Krishna; Sassa, Shigeru; Yousef, Malik; Showe, Michael; Showe, Louise

    2012-01-01

    Leishmania double transfectants (DTs) expressing the 2nd and 3rd enzymes in the heme biosynthetic pathway were previously reported to show neogenesis of uroporphyrin I (URO) when induced with delta-aminolevulinate (ALA), the product of the 1st enzyme in the pathway. The ensuing accumulation of URO in DT promastigotes rendered them light excitable to produce reactive oxygen species (ROS), resulting in their cytolysis. Evidence is presented showing that the DTs retained wild-type infectivity to their host cells and that the intraphagolysosomal/parasitophorous vacuolar (PV) DTs remained ALA inducible for uroporphyrinogenesis/photolysis. Exposure of DT-infected cells to ALA was noted by fluorescence microscopy to result in host-parasite differential porphyrinogenesis: porphyrin fluorescence emerged first in the host cells and then in the intra-PV amastigotes. DT-infected and control cells differed qualitatively and quantitatively in their porphyrin species, consistent with the expected multi- and monoporphyrinogenic specificities of the host cells and the DTs, respectively. After ALA removal, the neogenic porphyrins were rapidly lost from the host cells but persisted as URO in the intra-PV DTs. These DTs were thus extremely light sensitive and were lysed selectively by illumination under nonstringent conditions in the relatively ROS-resistant phagolysosomes. Photolysis of the intra-PV DTs returned the distribution of major histocompatibility complex (MHC) class II molecules and the global gene expression profiles of host cells to their preinfection patterns and, when transfected with ovalbumin, released this antigen for copresentation with MHC class I molecules. These Leishmania mutants thus have considerable potential as a novel model of a universal vaccine carrier for photodynamic immunotherapy/immunoprophylaxis. PMID:22307976

  13. Dung-inhabiting fungi: a potential reservoir of novel secondary metabolites for the control of plant pathogens.

    PubMed

    Sarrocco, Sabrina

    2016-04-01

    Coprophilous fungi are a large group of saprotrophic fungi mostly found in herbivore dung. The number of these fungi undergoing investigation is continually increasing, and new species and genera continue to be described. Dung-inhabiting fungi play an important ecological role in decomposing and recycling nutrients from animal dung. They produce a large array of bioactive secondary metabolites and have a potent enzymatic arsenal able to utilise even complex molecules. Bioactive secondary metabolites are actively involved in interaction with and defence against other organisms whose growth can be inhibited, resulting in an enhanced ecological fitness of producer strains. Currently, these antibiotics and bioactive secondary metabolites are of interest in medicine in particular, while very little information is available concerning their potential use in agriculture. This review introduces the ecology of dung-inhabiting fungi, with particular emphasis on the production of antibiotic compounds as a means to compete with other microorganisms. Owing to the fast pace of technological progress, new approaches to predicting the biosynthesis of bioactive metabolites are proposed. Coprophilous fungi should be considered as elite candidate organisms for the discovery of novel antifungal compounds, above all in view of their exploitation for crop protection. PMID:26662623

  14. Descriptions of four kleptoparasitic spiders of the genus Mysmenopsis (Araneae, Mysmenidae) and their potential host spider species in the genus Linothele (Araneae, Dipluridae) from Ecuador.

    PubMed

    Dupérré, Nadine; Tapia, Elicio

    2015-01-01

    Four new species of the genus Mysmenopsis are described: M. onorei n. sp., M. otonga n. sp., M. fernandoi n. sp. and M. chiquita n. sp. All species were collected in diplurid webs and are therefore assumed to be kleptoparasitic. Five potential host species of the genus Linothele (Dipluridae) that were collected with the symbionts are also described: Linothele yanachanka n. sp., L. pukachumpi n. sp., L. zaia n. sp., L. tsachilas n. sp. and L. quori n. sp. PMID:26249497

  15. The impact of alum coagulation on the character, biodegradability and disinfection by-product formation potential of reservoir natural organic matter (NOM) fractions.

    PubMed

    Soh, Yeow Chong; Roddick, Felicity; van Leeuwen, John

    2008-01-01

    Natural Organic Matter (NOM) from Myponga Reservoir, South Australia, was separated into four organic fractions based on their hydrophobic and hydrophilic properties using a sequence of non-ionic and ionic resins. NOM fractions were isolated for the purpose of determining the impact of alum coagulation on removal of these fractions in conventional water treatment, and their potential as precursors in the formation of disinfection by-products (DBP) and in supporting microbial growth. The NOM comprised VHA (very hydrophobic acids), SHA (slightly hydrophobic acids), CHA (charged hydrophilics) and NEU (neutral hydrophilics) fractions. These fractions were then jar tested with alum using low (50 mg/L), operational (100 mg/L) and very high (200 mg/L) doses to assess the removal capacities for these fractions in a conventional treatment plant. High-performance size exclusion chromatography-UV-DOC (HPSEC-UV-DOC) revealed that alum removed more of the hydrophobic and higher molecular weight components of NOM, but less of the NEU fraction and lower molecular weight components of NOM. Determination of biodegradable dissolved organic carbon (BDOC) indicated that the NEU fraction had the highest biodegradability, followed by the CHA, SHA and VHA fractions. The VHA fraction had the highest total-trihalomethane formation potential (t-THMFP), followed by NEU, SHA and CHA. The NOM not removed by alum coagulation had the potential to support microbial growth (NEU fraction), and disinfection by-product (DBP) formation (VHA and NEU fractions). To obtain treated water with lower overall residual NOM, other treatment methods would need to be applied in addition to alum coagulation in order to reduce the concentration of the neutral fraction. PMID:18845853

  16. Reservoir Simulations of Low-Temperature Geothermal Reservoirs

    NASA Astrophysics Data System (ADS)

    Bedre, Madhur Ganesh

    The eastern United States generally has lower temperature gradients than the western United States. However, West Virginia, in particular, has higher temperature gradients compared to other eastern states. A recent study at Southern Methodist University by Blackwell et al. has shown the presence of a hot spot in the eastern part of West Virginia with temperatures reaching 150°C at a depth of between 4.5 and 5 km. This thesis work examines similar reservoirs at a depth of around 5 km resembling the geology of West Virginia, USA. The temperature gradients used are in accordance with the SMU study. In order to assess the effects of geothermal reservoir conditions on the lifetime of a low-temperature geothermal system, a sensitivity analysis study was performed on following seven natural and human-controlled parameters within a geothermal reservoir: reservoir temperature, injection fluid temperature, injection flow rate, porosity, rock thermal conductivity, water loss (%) and well spacing. This sensitivity analysis is completed by using ‘One factor at a time method (OFAT)’ and ‘Plackett-Burman design’ methods. The data used for this study was obtained by carrying out the reservoir simulations using TOUGH2 simulator. The second part of this work is to create a database of thermal potential and time-dependant reservoir conditions for low-temperature geothermal reservoirs by studying a number of possible scenarios. Variations in the parameters identified in sensitivity analysis study are used to expand the scope of database. Main results include the thermal potential of reservoir, pressure and temperature profile of the reservoir over its operational life (30 years for this study), the plant capacity and required pumping power. The results of this database will help the supply curves calculations for low-temperature geothermal reservoirs in the United States, which is the long term goal of the work being done by the geothermal research group under Dr. Anderson at

  17. The high susceptibility of turkeys to influenza viruses of different origins implies their importance as potential intermediate hosts.

    PubMed

    Pillai, S P S; Pantin-Jackwood, M; Yassine, H M; Saif, Y M; Lee, C W

    2010-03-01

    Several previous reports and our studies show that waterfowl-origin influenza viruses can be more easily transmitted to domestic turkeys than chickens. Similarly, studies indicate turkeys to be better hosts for low pathogenic avian influenza viruses isolated from commercial poultry operations and live bird markets in comparison to chickens. Low 50% infectious-dose titers of wild bird as well as poultry-adapted viruses for turkeys further suggest that turkeys can be easily infected following a low-dose exposure. Also, interspecies transmission of swine influenza viruses to turkeys occurs frequently. These findings suggest the role of turkeys as suitable intermediate hosts that can be easily infected with influenza viruses of different origins and that turkeys can act as source of infection for other land-based poultry or even mammals. PMID:20521688

  18. The relevance of Murraya paniculata and related species as potential hosts and inoculum reservoirs of Candidatus Liberibacter asiaticus, causal agent of Huanglongbing (HLB)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Huanglongbing (HLB), considered the most serious insect-vectored bacterial disease of citrus, is transmitted in nature by the Asian citrus psyllid Diaphorina citri and the African citrus psyllid Trioza erytreae. Diaphorina citri was discovered in southern Florida in 1998 and the HLB disease in 2005...

  19. Occurrence of Squash yellow mild mottle virus and Pepper golden mosaic virus in Potential New Hosts in Costa Rica

    PubMed Central

    Castro, Ruth M.; Moreira, Lisela; Rojas, María R.; Gilbertson, Robert L.; Hernández, Eduardo; Mora, Floribeth; Ramírez, Pilar

    2013-01-01

    Leaf samples of Solanum lycopersicum, Capsicum annuum, Cucurbita moschata, Cucurbita pepo, Sechium edule and Erythrina spp. were collected. All samples were positive for begomoviruses using polymerase chain reaction and degenerate primers. A sequence of ∼1,100 bp was obtained from the genomic component DNA-A of 14 samples. In addition, one sequence of ∼580 bp corresponding to the coat protein (AV1) was obtained from a chayote (S. edule) leaf sample. The presence of Squash yellow mild mottle virus (SYMMoV) and Pepper golden mosaic virus (PepGMV) were confirmed. The host range reported for SYMMoV includes species of the Cucurbitaceae, Caricaceae and Fabaceae families. This report extends the host range of SYMMoV to include the Solanaceae family, and extends the host range of PepGMV to include C. moschata, C. pepo and the Fabaceae Erythrina spp. This is the first report of a begomovirus (PepGMV) infecting chayote in the Western Hemisphere. PMID:25288955

  20. Reservoir Technology

    SciTech Connect

    Renner, J.L.

    1992-03-24

    The reservoir technology program supports the utilization of geothermal resources through development and verification of new earth science technologies for: exploration, fluid production and injection; and prediction of reservoir lifetimes. A two-fold strategy of conducting DOE-sponsored research to meet higher-risk, longer-term needs and cost-shared research with industry in areas of greatest current need is utilized to maximize the benefit of the program to the geothermal industry. The program uses a coordinated, multi-disciplinary approach to investigating and solving reservoir problems facing the industry. Research at The Geysers geothermal field has received major emphasis in the past three years. Recent progress in that work will be reviewed in detail by The Geysers operators, federal, state and local regulators and other interested parties during a meeting in Santa Rosa on May 5 and 6, 1992. Hence the papers by Lipman, Bodvarsson et al., Wannamaker, et al., Horne, and Shook in this proceedings volume emphasize non-Geysers research in the program.

  1. Small Indian mongooses and masked palm civets serve as new reservoirs of Bartonella henselae and potential sources of infection for humans.

    PubMed

    Sato, S; Kabeya, H; Shigematsu, Y; Sentsui, H; Une, Y; Minami, M; Murata, K; Ogura, G; Maruyama, S

    2013-12-01

    The prevalence and genetic properties of Bartonella species were investigated in small Indian mongooses and masked palm civets in Japan. Bartonella henselae, the causative agent of cat-scratch disease (CSD) was isolated from 15.9% (10/63) of the mongooses and 2.0% (1/50) of the masked palm civets, respectively. The bacteraemic level ranged from 3.0 × 10(1) to 8.9 × 10(3) CFU/mL in mongooses and was 7.0 × 10(3) CFU/mL in the masked palm civet. Multispacer typing (MST) analysis based on nine intergenic spacers resulted in the detection of five MST genotypes (MSTs 8, 14, 37, 58 and 59) for the isolates, which grouped in lineage 1 with MST genotypes of isolates from all CSD patients and most of the cats in Japan. It was also found that MST14 from the mongoose strains was the predominant genotype of cat and human strains. This is the first report on the isolation of B. henselae from small Indian mongooses and masked palm civets. The data obtained in the present study suggest that these animals serve as new reservoirs for B. henselae, and may play a role as potential sources of human infection. PMID:23433322

  2. Disruptions of Host Immunity and Inflammation by Giardia Duodenalis: Potential Consequences for Co-Infections in the Gastro-Intestinal Tract.

    PubMed

    Cotton, James A; Amat, Christina B; Buret, Andre G

    2015-01-01

    Giardia duodenalis (syn. G. intestinalis, or G. lamblia) is a leading cause of waterborne diarrheal disease that infects hundreds of millions of people annually. Research on Giardia has greatly expanded within the last few years, and our understanding of the pathophysiology and immunology on this parasite is ever increasing. At peak infection, Giardia trophozoites induce pathophysiological responses that culminate in the development of diarrheal disease. However, human data has suggested that the intestinal mucosa of Giardia-infected individuals is devoid of signs of overt intestinal inflammation, an observation that is reproduced in animal models. Thus, our understanding of host inflammatory responses to the parasite remain incompletely understood and human studies and experimental data have produced conflicting results. It is now also apparent that certain Giardia infections contain mechanisms capable of modulating their host's immune responses. As the oral route of Giardia infection is shared with many other gastrointestinal (GI) pathogens, co-infections may often occur, especially in places with poor sanitation and/or improper treatment of drinking water. Moreover, Giardia infections may modulate host immune responses and have been found to protect against the development of diarrheal disease in developing countries. The following review summarizes our current understanding of the immunomodulatory mechanisms of Giardia infections and their consequences for the host, and highlights areas for future research. Potential implications of these immunomodulatory effects during GI co-infection are also discussed. PMID:26569316

  3. Potential Impacts of Leakage from Black Rock Reservoir on the Hanford Site Unconfined Aquifer: Initial Hypothetical Simulations of Flow and Contaminant Transport

    SciTech Connect

    Freedman, Vicky L.

    2008-01-30

    Initial scoping calculations of the unconfined aquifer at the Hanford Site were carried out for the U.S. Bureau of Reclamation (USBR) to investigate the potential impacts on the Hanford unconfined aquifer that would result from leakage from the proposed Black Rock Reservoir to the west. Although impacts on groundwater flow and contaminant transport were quantified based on numerical simulation results, the investigation represented a qualitative assessment of the potential lateral recharge that could result in adverse effects on the aquifer. Because the magnitude of the potential leakage is unknown, hypothetical bounding calculations were performed. When a quantitative analysis of the magnitude of the potential recharge from Black Rock Reservoir is obtained, the hydrologic impacts analysis will be revisited. The analysis presented in this report represents initial bounding calculations. A maximum lateral recharge (i.e., upland flux) was determined in the first part of this study by executing steady-state flow simulations that raised the water table no higher than the elevation attained in the Central Plateau during the Hanford operational period. This metric was selected because it assumed a maximum remobilization of contaminants that existed under previous fully saturated conditions. Three steady-state flow fields were then used to analyze impacts to transient contaminant transport: a maximum recharge (27,000 acre-ft/yr), a no additional flux (365 acre-ft/yr), and an intermediate recharge case (16,000 acre-ft/yr). The transport behavior of four radionuclides was assessed for a 300 year simulation period with the three flow fields. The four radionuclides are tritium, iodine-129, technetium-99, and uranium-238. Transient flow and transport simulations were used to establish hypothetical concentration distributions in the subsurface. Using the simulated concentration distributions in 2005 as initial conditions for steady-state flow runs, simulations were executed to

  4. Fasciola hepatica mucin-encoding gene: expression, variability and its potential relevance in host-parasite relationship.

    PubMed

    Cancela, Martín; Santos, Guilherme B; Carmona, Carlos; Ferreira, Henrique B; Tort, José Francisco; Zaha, Arnaldo

    2015-12-01

    Fasciola hepatica is the causative agent of fasciolosis, a zoonosis with significant impact both in human and animal health. Understanding the basic processes of parasite biology, especially those related to interactions with its host, will contribute to control F. hepatica infections and hence liver pathology. Mucins have been described as important mediators for parasite establishment within its host, due to their key roles in immune evasion. In F. hepatica, mucin expression is upregulated in the mammalian invasive newly excysted juvenile (NEJ) stage in comparison with the adult stage. Here, we performed sequencing of mucin cDNAs prepared from NEJ RNA, resulting in six different cDNAs clusters. The differences are due to the presence of a tandem repeated sequence of 66 bp encoded by different exons. Two groups of apomucins one with three and the other with four repeats, with 459 and 393 bp respectively, were identified. These cDNAs have open reading frames encoding Ser-Thr enriched proteins with an N-terminal signal peptide, characteristic of apomucin backbone. We cloned a 4470 bp gene comprising eight exons and seven introns that encodes all the cDNA variants identified in NEJs. By real time polymerase chain reaction and high-resolution melting approaches of individual flukes we infer that fhemuc-1 is a single-copy gene, with at least two different alleles. Our data suggest that both gene polymorphism and alternative splicing might account for apomucin variability in the fhemuc-1 gene that is upregulated in NEJ invasive stage. The relevance of this variation in host-parasite interplay is discussed. PMID:26440911

  5. Comparative Analysis of the Complete Genome Sequence of the California MSW Strain of Myxoma Virus Reveals Potential Host Adaptations

    PubMed Central

    Kerr, Peter J.; Rogers, Matthew B.; Fitch, Adam; DePasse, Jay V.; Cattadori, Isabella M.; Hudson, Peter J.; Tscharke, David C.; Holmes, Edward C.

    2013-01-01

    Myxomatosis is a rapidly lethal disease of European rabbits that is caused by myxoma virus (MYXV). The introduction of a South American strain of MYXV into the European rabbit population of Australia is the classic case of host-pathogen coevolution following cross-species transmission. The most virulent strains of MYXV for European rabbits are the Californian viruses, found in the Pacific states of the United States and the Baja Peninsula, Mexico. The natural host of Californian MYXV is the brush rabbit, Sylvilagus bachmani. We determined the complete sequence of the MSW strain of Californian MYXV and performed a comparative analysis with other MYXV genomes. The MSW genome is larger than that of the South American Lausanne (type) strain of MYXV due to an expansion of the terminal inverted repeats (TIRs) of the genome, with duplication of the M156R, M154L, M153R, M152R, and M151R genes and part of the M150R gene from the right-hand (RH) end of the genome at the left-hand (LH) TIR. Despite the extreme virulence of MSW, no novel genes were identified; five genes were disrupted by multiple indels or mutations to the ATG start codon, including two genes, M008.1L/R and M152R, with major virulence functions in European rabbits, and a sixth gene, M000.5L/R, was absent. The loss of these gene functions suggests that S. bachmani is a relatively recent host for MYXV and that duplication of virulence genes in the TIRs, gene loss, or sequence variation in other genes can compensate for the loss of M008.1L/R and M152R in infections of European rabbits. PMID:23986601

  6. Comparative analysis of the complete genome sequence of the California MSW strain of myxoma virus reveals potential host adaptations.

    PubMed

    Kerr, Peter J; Rogers, Matthew B; Fitch, Adam; Depasse, Jay V; Cattadori, Isabella M; Hudson, Peter J; Tscharke, David C; Holmes, Edward C; Ghedin, Elodie

    2013-11-01

    Myxomatosis is a rapidly lethal disease of European rabbits that is caused by myxoma virus (MYXV). The introduction of a South American strain of MYXV into the European rabbit population of Australia is the classic case of host-pathogen coevolution following cross-species transmission. The most virulent strains of MYXV for European rabbits are the Californian viruses, found in the Pacific states of the United States and the Baja Peninsula, Mexico. The natural host of Californian MYXV is the brush rabbit, Sylvilagus bachmani. We determined the complete sequence of the MSW strain of Californian MYXV and performed a comparative analysis with other MYXV genomes. The MSW genome is larger than that of the South American Lausanne (type) strain of MYXV due to an expansion of the terminal inverted repeats (TIRs) of the genome, with duplication of the M156R, M154L, M153R, M152R, and M151R genes and part of the M150R gene from the right-hand (RH) end of the genome at the left-hand (LH) TIR. Despite the extreme virulence of MSW, no novel genes were identified; five genes were disrupted by multiple indels or mutations to the ATG start codon, including two genes, M008.1L/R and M152R, with major virulence functions in European rabbits, and a sixth gene, M000.5L/R, was absent. The loss of these gene functions suggests that S. bachmani is a relatively recent host for MYXV and that duplication of virulence genes in the TIRs, gene loss, or sequence variation in other genes can compensate for the loss of M008.1L/R and M152R in infections of European rabbits. PMID:23986601

  7. Algae as Reservoirs for Coral Pathogens

    PubMed Central

    Sweet, Michael J.; Bythell, John C.; Nugues, Maggy M.

    2013-01-01

    Benthic algae are associated with coral death in the form of stress and disease. It's been proposed that they release exudates, which facilitate invasion of potentially pathogenic microbes at the coral-algal interface, resulting in coral disease. However, the original source of these pathogens remains unknown. This study examined the ability of benthic algae to act as reservoirs of coral pathogens by characterizing surface associated microbes associated with major Caribbean and Indo-Pacific algal species/types and by comparing them to potential pathogens of two dominant coral diseases: White Syndrome (WS) in the Indo-Pacific and Yellow Band Disease (YBD) in the Caribbean. Coral and algal sampling was conducted simultaneously at the same sites to avoid spatial effects. Potential pathogens were defined as those absent or rare in healthy corals, increasing in abundance in healthy tissues adjacent to a disease lesion, and dominant in disease lesions. Potentially pathogenic bacteria were detected in both WS and YBD and were also present within the majority of algal species/types (54 and 100% for WS and YBD respectively). Pathogenic ciliates were associated only with WS and not YBD lesions and these were also present in 36% of the Indo-Pacific algal species. Although potential pathogens were associated with many algal species, their presence was inconsistent among replicate algal samples and detection rates were relatively low, suggestive of low density and occurrence. At the community level, coral-associated microbes irrespective of the health of their host differed from algal-associated microbes, supporting that algae and corals have distinctive microbial communities associated with their tissue. We conclude that benthic algae are common reservoirs for a variety of different potential coral pathogens. However, algal-associated microbes alone are unlikely to cause coral death. Initial damage or stress to the coral via other competitive mechanisms is most likely a

  8. JCat: a novel tool to adapt codon usage of a target gene to its potential expression host.

    PubMed

    Grote, Andreas; Hiller, Karsten; Scheer, Maurice; Münch, Richard; Nörtemann, Bernd; Hempel, Dietmar C; Jahn, Dieter

    2005-07-01

    A novel method for the adaptation of target gene codon usage to most sequenced prokaryotes and selected eukaryotic gene expression hosts was developed to improve heterologous protein production. In contrast to existing tools, JCat (Java Codon Adaptation Tool) does not require the manual definition of highly expressed genes and is, therefore, a very rapid and easy method. Further options of JCat for codon adaptation include the avoidance of unwanted cleavage sites for restriction enzymes and Rho-independent transcription terminators. The output of JCat is both graphically and as Codon Adaptation Index (CAI) values given for the pasted sequence and the newly adapted sequence. Additionally, a list of genes in FASTA-format can be uploaded to calculate CAI values. In one example, all genes of the genome of Caenorhabditis elegans were adapted to Escherichia coli codon usage and further optimized to avoid commonly used restriction sites. In a second example, the Pseudomonas aeruginosa exbD gene codon usage was adapted to E.coli codon usage with parallel avoidance of the same restriction sites. For both, the degree of introduced changes was documented and evaluated. JCat is integrated into the PRODORIC database that hosts all required information on the various organisms to fulfill the requested calculations. JCat is freely accessible at http://www.prodoric.de/JCat. PMID:15980527

  9. Possible basis for the emergence of H1N1 viruses with pandemic potential from avian hosts

    PubMed Central

    Koçer, Zeynep A; Krauss, Scott; Zanin, Mark; Danner, Angela; Gulati, Shelly; Jones, Jeremy C; Friedman, Kimberly; Graham, Allison; Forrest, Heather; Seiler, Jon; Air, Gillian M; Webster, Robert G

    2015-01-01

    Influenza A viruses of the H1N1 subtype have emerged from the avian influenza gene pool in aquatic birds and caused human pandemics at least twice during the past century. Despite this fact, surprisingly little is known about the H1N1 gene pool in the aquatic bird reservoir. A preliminary study showed that an H1N1 virus from a shorebird of the Charadriiformes order was transmitted between animals through the airborne route of infection, whereas an H1N1 virus from a bird of the Anseriformes order was not. Here we show that two of the three H1N1 viruses isolated from Charadriiformes species in 2009 were transmitted between animals through the airborne route of infection, and five H1N1 isolates from Anseriformes species were not. The one H1N1 virus from a Charadriiformes species that failed to transmit through the airborne route was a reassortant possessing multiple internal gene segments from Anseriformes species. The molecular differences between the airborne-transmissible and non-airborne-transmissible H1N1 viruses were multigenic, involving the selection of virus with human-like receptor-binding specificity (α2-6 sialic acid) and multiple differences in the polymerase complex, mainly in the PB2, PB1-F2, and nonstructural genes. PMID:26251829

  10. Calicivirus emergence from ocean reservoirs: zoonotic and interspecies movements.

    PubMed Central

    Smith, A. W.; Skilling, D. E.; Cherry, N.; Mead, J. H.; Matson, D. O.

    1998-01-01

    Caliciviral infections in humans, among the most common causes of viral-induced vomiting and diarrhea, are caused by the Norwalk group of small round structured viruses, the Sapporo caliciviruses, and the hepatitis E agent. Human caliciviruses have been resistant to in vitro cultivation, and direct study of their origins and reservoirs outside infected humans or water and foods (such as shellfish contaminated with human sewage) has been difficult. Modes of transmission, other than direct fecal-oral routes, are not well understood. In contrast, animal viruses found in ocean reservoirs, which make up a second calicivirus group, can be cultivated in vitro. These viruses can emerge and infect terrestrial hosts, including humans. This article reviews the history of animal caliciviruses, their eventual recognition as zoonotic agents, and their potential usefulness as a predictive model for noncultivatable human and other animal caliciviruses (e.g., those seen in association with rabbit hemorrhagic disease). PMID:9452394

  11. Environmentally transmitted parasites: Host-jumping in a heterogeneous environment.

    PubMed

    Caraco, Thomas; Cizauskas, Carrie A; Wang, Ing-Nang

    2016-05-21

    Groups of chronically infected reservoir-hosts contaminate resource patches by shedding a parasite׳s free-living stage. Novel-host groups visit the same patches, where they are exposed to infection. We treat arrival at patches, levels of parasite deposition, and infection of the novel host as stochastic processes, and derive the expected time elapsing until a host-jump (initial infection of a novel host) occurs. At stationarity, mean parasite densities are independent of reservoir-host group size. But within-patch parasite-density variances increase with reservoir group size. The probability of infecting a novel host declines with parasite-density variance; consequently larger reservoir groups extend the mean waiting time for host-jumping. Larger novel-host groups increase the probability of a host-jump during any single patch visit, but also reduce the total number of visits per unit time. Interaction of these effects implies that the waiting time for the first infection increases with the novel-host group size. If the reservoir-host uses resource patches in any non-uniform manner, reduced spatial overlap between host species increases the waiting time for host-jumping. PMID:26921466

  12. The Potential Use of Forensic DNA Methods Applied to Sand Fly Blood Meal Analysis to Identify the Infection Reservoirs of Anthroponotic Visceral Leishmaniasis

    PubMed Central

    Inbar, Ehud; Lawyer, Philip; Sacks, David; Podini, Daniele

    2016-01-01

    Background In the Indian sub-continent, visceral leishmaniasis (VL), also known as kala azar, is a fatal form of leishmaniasis caused by the kinetoplastid parasite Leishmania donovani and transmitted by the sand fly Phlebotomus argentipes. VL is prevalent in northeast India where it is believed to have an exclusive anthroponotic transmission cycle. There are four distinct cohorts of L. donovani exposed individuals who can potentially serve as infection reservoirs: patients with active disease, cured VL cases, patients with post kala azar dermal leishmaniasis (PKDL), and asymptomatic individuals. The relative contribution of each group to sustaining the transmission cycle of VL is not known. Methodology/Principal Findings To answer this critical epidemiological question, we have addressed the feasibility of an approach that would use forensic DNA methods to recover human DNA profiles from the blood meals of infected sand flies that would then be matched to reference DNA sampled from individuals living or working in the vicinity of the sand fly collections. We found that the ability to obtain readable human DNA fingerprints from sand flies depended entirely on the size of the blood meal and the kinetics of its digestion. Useable profiles were obtained from most flies within the first 24 hours post blood meal (PBM), with a sharp decline at 48 hours and no readable profiles at 72 hours. This early time frame necessitated development of a sensitive, nested-PCR method compatible with detecting L. donovani within a fresh, 24 hours blood meal in flies fed on infected hamsters. Conclusion/Significance Our findings establish the feasibility of the forensic DNA method to directly trace the human source of an infected blood meal, with constraints imposed by the requirement that the flies be recovered for analysis within 24 hours of their infective feed. PMID:27192489

  13. Bat-man disease transmission: zoonotic pathogens from wildlife reservoirs to human populations.

    PubMed

    Allocati, N; Petrucci, A G; Di Giovanni, P; Masulli, M; Di Ilio, C; De Laurenzi, V

    2016-01-01

    Bats are natural reservoir hosts and sources of infection of several microorganisms, many of which cause severe human diseases. Because of contact between bats and other animals, including humans, the possibility exists for additional interspecies transmissions and resulting disease outbreaks. The purpose of this article is to supply an overview on the main pathogens isolated from bats that have the potential to cause disease in humans. PMID:27551536

  14. Bat–man disease transmission: zoonotic pathogens from wildlife reservoirs to human populations

    PubMed Central

    Allocati, N; Petrucci, A G; Di Giovanni, P; Masulli, M; Di Ilio, C; De Laurenzi, V

    2016-01-01

    Bats are natural reservoir hosts and sources of infection of several microorganisms, many of which cause severe human diseases. Because of contact between bats and other animals, including humans, the possibility exists for additional interspecies transmissions and resulting disease outbreaks. The purpose of this article is to supply an overview on the main pathogens isolated from bats that have the potential to cause disease in humans. PMID:27551536

  15. Potential of Host Defense Peptide Prodrugs as Neutrophil Elastase-Dependent Anti-Infective Agents for Cystic Fibrosis

    PubMed Central

    Humphreys, Hilary; Greene, Catherine M.; Fitzgerald-Hughes, Deirdre; Devocelle, Marc

    2014-01-01

    Host defense peptides (HDPs) are short antimicrobial peptides of the innate immune system. Deficiencies in HDPs contribute to enhanced susceptibility to infections, e.g., in cystic fibrosis (CF). Exogenous HDPs can compensate for these deficiencies, but their development as antimicrobials is limited by cytotoxicity. Three HDP prodrugs were designed so their net positive charge is masked by a promoiety containing a substrate for the enzyme neutrophil elastase (NE). This approach can confine activation to sites with high NE levels. Enzyme-labile peptides were synthesized, and their activation was investigated using purified NE. Susceptibilities of Pseudomonas aeruginosa to parent and prodrug peptides in the presence and absence of NE-rich CF human bronchoalveolar lavage (BAL) fluid and different NaCl concentrations were compared. The effect of the HDP promoiety on cytotoxicity was determined with cystic fibrosis bronchial epithelial (CFBE41o-) cells. NE in CF BAL fluids activated the HDP prodrugs, restoring bactericidal activity against reference and clinical isolates of P. aeruginosa. However, activation also required the addition of 300 mM NaCl. Under these conditions, the bactericidal activity levels of the HDP prodrugs differed, with pro-P18 demonstrating the greatest activity (90% to 100% of that of the parent, P18, at 6.25 μg/ml). Cytotoxic effects on CFBE41o- cells were reduced by the addition of the promoiety to HDPs. We demonstrate here for the first time the selective activation of novel HDP prodrugs by a host disease-associated enzyme at in vivo concentrations of the CF lung. This approach may lead to the development of novel therapeutic agents with low toxicity that are active under the challenging conditions of the CF lung. PMID:24277028

  16. Disruptions of Host Immunity and Inflammation by Giardia Duodenalis: Potential Consequences for Co-Infections in the Gastro-Intestinal Tract

    PubMed Central

    Cotton, James A.; Amat, Christina B.; Buret, Andre G.

    2015-01-01

    Giardia duodenalis (syn. G. intestinalis, or G. lamblia) is a leading cause of waterborne diarrheal disease that infects hundreds of millions of people annually. Research on Giardia has greatly expanded within the last few years, and our understanding of the pathophysiology and immunology on this parasite is ever increasing. At peak infection, Giardia trophozoites induce pathophysiological responses that culminate in the development of diarrheal disease. However, human data has suggested that the intestinal mucosa of Giardia-infected individuals is devoid of signs of overt intestinal inflammation, an observation that is reproduced in animal models. Thus, our understanding of host inflammatory responses to the parasite remain incompletely understood and human studies and experimental data have produced conflicting results. It is now also apparent that certain Giardia infections contain mechanisms capable of modulating their host’s immune responses. As the oral route of Giardia infection is shared with many other gastrointestinal (GI) pathogens, co-infections may often occur, especially in places with poor sanitation and/or improper treatment of drinking water. Moreover, Giardia infections may modulate host immune responses and have been found to protect against the development of diarrheal disease in developing countries. The following review summarizes our current understanding of the immunomodulatory mechanisms of Giardia infections and their consequences for the host, and highlights areas for future research. Potential implications of these immunomodulatory effects during GI co-infection are also discussed. PMID:26569316

  17. Changes of resistome, mobilome and potential hosts of antibiotic resistance genes during the transformation of anaerobic digestion from mesophilic to thermophilic.

    PubMed

    Tian, Zhe; Zhang, Yu; Yu, Bo; Yang, Min

    2016-07-01

    This study aimed to reveal how antibiotic resistance genes (ARGs) and their horizontal and vertical transfer-related items (mobilome and bacterial hosts) respond to the transformation of anaerobic digestion (AD) from mesophilic to thermophilic using one-step temperature increase. The resistomes and mobilomes of mesophilic and thermophilic sludge were investigated using metagenome sequencing, and the changes in 24 representative ARGs belonging to three categories, class 1 integron and bacterial genera during the transition period were further followed using quantitative PCR and 454-pyrosequencing. After the temperature increase, resistome abundance in the digested sludge decreased from 125.97 ppm (day 0, mesophilic) to 50.65 ppm (day 57, thermophilic) with the reduction of most ARG types except for the aminoglycoside resistance genes. Thermophilic sludge also had a smaller mobilome, including plasmids, insertion sequences and integrons, than that of mesophilic sludge, suggesting the lower horizontal transfer potential of ARGs under thermophilic conditions. On the other hand, the total abundance of 18 bacterial genera, which were suggested as the possible hosts for 13 ARGs through network analysis, decreased from 23.27% in mesophilic sludge to 11.92% in thermophilic sludge, indicating fewer hosts for the vertical expansion of ARGs after the increase in temperature. These results indicate that the better reduction of resistome abundance by thermophilic AD might be associated with the decrease of both the horizontal and vertical transferability of ARGs. PMID:27108212

  18. Petrophysical examination of CO₂-brine-rock interactions-results of the first stage of long-term experiments in the potential Zaosie Anticline reservoir (central Poland) for CO₂ storage.

    PubMed

    Tarkowski, Radosław; Wdowin, Magdalena; Manecki, Maciej

    2015-01-01

    The objective of the study was determination of experiment-induced alterations and changes in the properties of reservoir rocks and sealing rocks sampled from potential reservoir for CO₂. In the experiment, rocks submerged in brine in specially constructed reactors were subjected to CO₂ pressure of 6 MPa for 20 months at room temperature. Samples of Lower Jurassic reservoir rocks and sealing rocks (sandstones, claystones, and mudstones) from the Zaosie Anticline (central Poland) were analysed for their petrophysical properties (specific surface area, porosity, pore size and distribution) before and after the experiment. Comparison of the ionic composition the brines before and after the experiment demonstrated an increase in total dissolved solids as well as the concentration of sulphates and calcium ions. This indicates partial dissolution of the rock matrix and the cements. As a result of the reaction, the properties of reservoir rocks did not changed significantly and should not affect the process of CO₂ storage. In the case of the sealing rocks, however, the porosity, the framework density, as well as the average capillary and threshold diameter increased. Also, the pore distribution in the pore space changed in favour of larger pores. The reasons for these changes could not be explained by petrographic characteristics and should be thoroughly investigated. PMID:25519873

  19. Identifying compartmentalization in gas reservoirs

    SciTech Connect

    Junkin, J.; Cooper, K.; Sippel, M.

    1997-01-01

    Compartmentalization as a function of depositional systems is now recognized as a common type of reservoir heterogeneity that limits recovery from oil and gas reservoirs. US Department of Energy (DOE) estimates indicate that substantial quantities of gas resources will not be recovered from presently identified reservoirs under historic development practices. The Secondary Natural Gas Recovery (SGR) project sponsored by the Gas Research Institute (GRI), state of Texas and DOE quantified compartmentalization over intervals as large as 2,000 feet in several different fluvial deltaic reservoirs. Early recognition of compartmentalized behavior can be used to pursue a more rapid development plan including efficient well spacing and elimination of redundant wells. Three classes of reservoir compartment sizes were delineated in the SGR project using methods discussed in this article. Forward stochastic modeling of gas recovery from these compartment-size classes established well spacing requirements that would yield maximum gas contact efficiency. The presence of reservoir compartmentalization was also shown to correlate with reserve growth. Also, those reservoirs classified as having smaller compartment sizes exhibited the greatest reserve growth potential. Utilization of tools, such as personal computer-based methods discussed, enables better engineering interpretation of actual field behavior. Some of these tools require minimal production data, which is readily available on CD-ROM or via modem at very low cost.

  20. Analysis of active microorganisms and their potential role in carbon dioxide turnover in the natural gas reservoirs Altmark and Schneeren (Germany)

    NASA Astrophysics Data System (ADS)

    Gniese, Claudia; Muschalle, Thomas; Mühling, Martin; Frerichs, Janin; Krüger, Martin; Kassahun, Andrea; Seifert, Jana; Hoth, Nils

    2010-05-01

    RECOBIO-2, part of the BMBF-funded Geotechnologien consortium, investigates the presence of active microorganisms and their potential role in CO2 turnover in the formation waters of the Schneeren and Altmark gas fields, which are both operated by GDF SUEZ E&P Germany GmbH. Located to the north west of Hannover the natural gas reservoir Schneeren is composed of compacted Westfal-C sandstones that have been naturally fractured into a subsalinar horst structure. This gas field is characterized by a depth of 2700 to 3500m, a bottom-hole temperature between 80 and 110° C as well as a moderate salinity (30-60g/l) and high sulfate contents (~1000mg/l). During RECOBIO-1 produced formation water collected at wells in Schneeren was already used to conduct long term laboratory experiments. These served to examine possible microbial processes of the autochthonous biocenosis induced by the injection of CO2 (Ehinger et al. 2009 submitted). Microorganisms in particular sulfate-reducing bacteria and methanogens were able to grow in the presence of powdered rock material, CO2 and H2 without any other added nutrients. The observed development of DOC was now proven in another long term experiment using labelled 13CO2. In contrast to Schneeren, the almost depleted natural gas reservoir Altmark exhibits an average depth of 3300m, a higher bottom-hole temperature (111° C to 120° C), a higher salinity (275-350g/l) but sulfate is absent. This Rotliegend formation is located in the southern edge of the Northeast German Basin and is of special interest for CO2 injection because of favourable geological properties. Using molecular biological techniques two types of samples are analyzed: formation water collected at the well head (November 2008) and formation water sampled in situ from a depth of around 3000m (May 2009). Some of the wells are treated frequently with a foaming agent while others are chemically untreated. Despite the extreme environmental conditions in the Altmark gas field

  1. Potential effects of coal mining and road construction on the water quality of Scofield Reservoir and its drainage area, central Utah, October 1982 to October 1984

    USGS Publications Warehouse

    Stephens, D.W.; Thompson, K.R.; Wangsgard, J.B.

    1996-01-01

    Studies were done during 1983-84 to determine the effect of coal mining in Pleasant Valley and construction of State Road 264 in Eccles Canyon on the water quality of local streams and on Scofield Reservoir. Streamflow during 1983-84 set high-flow records in all gaged streams and transported considerable sediment and associated trace metals and nutrients to Scofield Reservoir. Concentrations of most toxic substances were not sufficient to constitute a hazard in the streams or reservoir; however, concentrations of total phosphorus in the streams commonly exceeded water-quality criterion for phosphate as phosphorus of 0.05 milligram per liter, established by the State as an indicator of pollution. Data from Eccles Canyon creek, which is in an actively mined area, were compared to data from Boardinghouse Canyon creek, which is in a nearby canyon with no active mining or construction activities. Concentrations of iron, manganese, and zinc were substantially larger in Eccles Canyon creek than in Boardinghouse Canyon creek. Loads of suspended sediment during storms and base-flow conditions also were larger in Eccles Canyon creek. Concentrations of ammonia nitrogen, total phosphorus, mercury, and zinc in water from Scofield Reservoir occasionally exceeded Utah State water- quality standards and criteria for protection of aquatic wildlife that were in effect during 1983- 84. In combination with the generally cooler spring temperatures, shortened growing season, and greater flushing rate for the reservoir, the large inflow of water into the reservoir prevented the occurrence of blue-green blooms common in earlier years. Large concentrations of orthophosphorus and manganese were released from sediment cores, and concentrations of manganese in the hypolimnion frequently exceeded the Federal drinking-water standard.

  2. Rodent reservoirs of future zoonotic diseases

    PubMed Central

    Han, Barbara A.; Schmidt, John Paul; Bowden, Sarah E.; Drake, John M.

    2015-01-01

    The increasing frequency of zoonotic disease events underscores a need to develop forecasting tools toward a more preemptive approach to outbreak investigation. We apply machine learning to data describing the traits and zoonotic pathogen diversity of the most speciose group of mammals, the rodents, which also comprise a disproportionate number of zoonotic disease reservoirs. Our models predict reservoir status in this group with over 90% accuracy, identifying species with high probabilities of harboring undiscovered zoonotic pathogens based on trait profiles that may serve as rules of thumb to distinguish reservoirs from nonreservoir species. Key predictors of zoonotic reservoirs include biogeographical properties, such as range size, as well as intrinsic host traits associated with lifetime reproductive output. Predicted hotspots of novel rodent reservoir diversity occur in the Middle East and Central Asia and the Midwestern United States. PMID:26038558

  3. Simultaneous Identification of Potential Pathogenicity Factors of Mycoplasma agalactiae in the Natural Ovine Host by Negative Selection

    PubMed Central

    Hegde, Shivanand; Hegde, Shrilakshmi; Zimmermann, Martina; Flöck, Martina; Spergser, Joachim; Rosengarten, Renate

    2015-01-01

    Mycoplasmas possess complex pathogenicity determinants that are largely unknown at the molecular level. Mycoplasma agalactiae serves as a useful model to study the molecular basis of mycoplasma pathogenicity. The generation and in vivo screening of a transposon mutant library of M. agalactiae were employed to unravel its host colonization factors. Tn4001mod mutants were sequenced using a novel sequencing method, and functionally heterogeneous pools containing 15 to 19 selected mutants were screened simultaneously through two successive cycles of sheep intramammary infections. A PCR-based negative selection method was employed to identify mutants that failed to colonize the udders and draining lymph nodes in the animals. A total of 14 different mutants found to be absent from ≥95% of samples were identified and subsequently verified via a second round of stringent confirmatory screening where 100% absence was considered attenuation. Using this criterion, seven mutants with insertions in genes MAG1050, MAG2540, MAG3390, uhpT, eutD, adhT, and MAG4460 were not recovered from any of the infected animals. Among the attenuated mutants, many contain disruptions in hypothetical genes, implying their previously unknown role in M. agalactiae pathogenicity. These data indicate the putative role of functionally different genes, including hypothetical ones, in the pathogenesis of M. agalactiae. Defining the precise functions of the identified genes is anticipated to increase our understanding of M. agalactiae infections and to develop successful intervention strategies against it. PMID:25916984

  4. Isolation and Host Range of Bacteriophage with Lytic Activity against Methicillin-Resistant Staphylococcus aureus and Potential Use as a Fomite Decontaminant

    PubMed Central

    Jensen, Kyle C.; Hair, Bryan B.; Wienclaw, Trevor M.; Murdock, Mark H.; Hatch, Jacob B.; Trent, Aaron T.; White, Tyler D.; Haskell, Kyler J.; Berges, Bradford K.

    2015-01-01

    Staphylococcus aureus (SA) is a commensal bacterium and opportunistic pathogen commonly associated with humans and is capable of causing serious disease and death including sepsis, pneumonia, and meningitis. Methicillin-resistant SA (MRSA) isolates are typically resistant to many available antibiotics with the common exception of vancomycin. The presence of vancomycin resistance in some SA isolates combined with the current heavy use of vancomycin to treat MRSA infections indicates that MRSA may achieve broad resistance to vancomycin in the near future. New MRSA treatments are clearly needed. Bacteriophages (phages) are viruses that infect bacteria, commonly resulting in death of the host bacterial cell. Phage therapy entails the use of phage to treat or prevent bacterial infections. In this study, 12 phages were isolated that can replicate in human SA and/or MRSA isolates as a potential way to control these infections. 5 phage were discovered through mitomycin C induction of prophage and 7 others as extracellular viruses. Primary SA strains were also isolated from environmental sources to be used as tools for phage discovery and isolation as well as to examine the target cell host range of the phage isolates by spot testing. Primary isolates were tested for susceptibility to oxacillin in order to determine which were MRSA. Experiments were performed to assess the host range and killing potential of newly discovered phage, and significant reductions in bacterial load were detected. We explored the utility of some phage to decontaminate fomites (glass and cloth) and found a significant reduction in colony forming units of MRSA following phage treatment, including tests of a phage cocktail against a cocktail of MRSA isolates. Our findings suggest that phage treatment can be used as an effective tool to decontaminate human MRSA from both hard surfaces and fabrics. PMID:26131892

  5. Isolation and Host Range of Bacteriophage with Lytic Activity against Methicillin-Resistant Staphylococcus aureus and Potential Use as a Fomite Decontaminant.

    PubMed

    Jensen, Kyle C; Hair, Bryan B; Wienclaw, Trevor M; Murdock, Mark H; Hatch, Jacob B; Trent, Aaron T; White, Tyler D; Haskell, Kyler J; Berges, Bradford K

    2015-01-01

    Staphylococcus aureus (SA) is a commensal bacterium and opportunistic pathogen commonly associated with humans and is capable of causing serious disease and death including sepsis, pneumonia, and meningitis. Methicillin-resistant SA (MRSA) isolates are typically resistant to many available antibiotics with the common exception of vancomycin. The presence of vancomycin resistance in some SA isolates combined with the current heavy use of vancomycin to treat MRSA infections indicates that MRSA may achieve broad resistance to vancomycin in the near future. New MRSA treatments are clearly needed. Bacteriophages (phages) are viruses that infect bacteria, commonly resulting in death of the host bacterial cell. Phage therapy entails the use of phage to treat or prevent bacterial infections. In this study, 12 phages were isolated that can replicate in human SA and/or MRSA isolates as a potential way to control these infections. 5 phage were discovered through mitomycin C induction of prophage and 7 others as extracellular viruses. Primary SA strains were also isolated from environmental sources to be used as tools for phage discovery and isolation as well as to examine the target cell host range of the phage isolates by spot testing. Primary isolates were tested for susceptibility to oxacillin in order to determine which were MRSA. Experiments were performed to assess the host range and killing potential of newly discovered phage, and significant reductions in bacterial load were detected. We explored the utility of some phage to decontaminate fomites (glass and cloth) and found a significant reduction in colony forming units of MRSA following phage treatment, including tests of a phage cocktail against a cocktail of MRSA isolates. Our findings suggest that phage treatment can be used as an effective tool to decontaminate human MRSA from both hard surfaces and fabrics. PMID:26131892

  6. Fully analogue photonic reservoir computer.

    PubMed

    Duport, François; Smerieri, Anteo; Akrout, Akram; Haelterman, Marc; Massar, Serge

    2016-01-01

    Introduced a decade ago, reservoir computing is an efficient approach for signal processing. State of the art capabilities have already been demonstrated with both computer simulations and physical implementations. If photonic reservoir computing appears to be promising a solution for ultrafast nontrivial computing, all the implementations presented up to now require digital pre or post processing, which prevents them from exploiting their full potential, in particular in terms of processing speed. We address here the possibility to get rid simultaneously of both digital pre and post processing. The standalone fully analogue reservoir computer resulting from our endeavour is compared to previous experiments and only exhibits rather limited degradation of performances. Our experiment constitutes a proof of concept for standalone physical reservoir computers. PMID:26935166

  7. Fully analogue photonic reservoir computer

    PubMed Central

    Duport, François; Smerieri, Anteo; Akrout, Akram; Haelterman, Marc; Massar, Serge

    2016-01-01

    Introduced a decade ago, reservoir computing is an efficient approach for signal processing. State of the art capabilities have already been demonstrated with both computer simulations and physical implementations. If photonic reservoir computing appears to be promising a solution for ultrafast nontrivial computing, all the implementations presented up to now require digital pre or post processing, which prevents them from exploiting their full potential, in particular in terms of processing speed. We address here the possibility to get rid simultaneously of both digital pre and post processing. The standalone fully analogue reservoir computer resulting from our endeavour is compared to previous experiments and only exhibits rather limited degradation of performances. Our experiment constitutes a proof of concept for standalone physical reservoir computers. PMID:26935166

  8. Host resistance to visceral leishmaniasis: prevalence and prevention.

    PubMed

    Maran, Naiara; Gomes, Pollyanna Stephanie; Freire-de-Lima, Leonardo; Freitas, Elisangela Oliveira; Freire-de-Lima, Célio Geraldo; Morrot, Alexandre

    2016-04-01

    Visceral leishmaniasis (VL) is a chronic parasitic disease caused by the vector-borne Leishmania donovani and Leishmania (L.) infantum chagasi parasites. The disease affects about 12 million humans in more than 90 countries worldwide. If not treated, the visceral form of Leishmania infection is potentially fatal, yielding about 50000 deaths per year. In the vertebrate host, the Leishmania species causing VL spread systematically to propagate in macrophage reservoirs distributed in the tissues of internal organs, primarily the liver, spleen, bone marrow and the lymph nodes. The infection is associated with evolved mechanisms from the parasite to subvert the host immune system in order to establish a persistent infection. Currently, efforts are being deployed to develop new anti-leishmanial therapies in VL combining immunomodulatory treatment regimens that burst the host immune responses together with leishmanicidal drugs that target the parasite growth. Discoveries in this field are discussed in this article. PMID:26934623

  9. The genetic and structural basis of two distinct terminal side branch residues in stewartan and amylovoran exopolysaccharides and their potential role in host adaptation.

    PubMed

    Wang, Xiaolei; Yang, Fan; von Bodman, Susanne B

    2012-01-01

    Stewartan and amylovoran exopolysaccharide (EPS) produced by the plant pathogenic bacteria Pantoea stewartii and Erwinia amylovora are virulence factors in the cause of Stewart's vascular wilt and fire blight. The biosynthesis of amylovoran and stewartan is encoded by a set of homologous operons that have been partially characterized, although some annotations are solely on the basis of sequence homology. The major distinguishing features of these two EPS forms are the presence of a terminal pyruvate in amylovoran and glucose in stewartan, even though the gene systems to account for both are conserved and present in each bacterium. This study explores the genetic, structural and functional differences of amylovoran and stewartan, and their potential role in host adaptation. We report that the pyruvyl transferase gene in P. stewartii is non-functional, while the terminal glucosyl transferase is catalytically active. Conversely, in E. amylovora, the homologous glucosyl transferase activity appears to be relatively ineffective, while the pyruvyl transferase function predominates. We also show that the terminally pyruvylated versus glucosylated EPS require specific repeating unit translocases (Wzx). We discuss the evolutionary, functional and biological implications of the terminally pyruvylated and glucosylated polymers and their potential contribution to plant and insect host adaptation. PMID:22111898

  10. Review of potential host rocks for radioactive waste disposal in the southeast United States-Southern Piedmont subregion

    SciTech Connect

    Not Available

    1980-10-01

    A literature study was conducted on the geology of the Southern Piedmont province in the states of Maryland, Virginia, North Carolina, South Carolina, and Georgia. The purpose was to identify geologic areas potentially suitable for containment of a repository for the long-term isolation of solidified radioactive waste. The crystalline rocks of the Southern Piedmont province range in age from Precambrian to Paleozoic, and are predominantly slates, phyllites, argillites, schists, metavolcanics, gneisses, gabbros, and granites. These rock units were classified as either favorable, potentially favorable, or unfavorable as potential study areas based on an evaluation of the geologic, hydrologic, and geotechnical characteristics. No socio-economic factors were considered. Rocks subjected to multiple periods of deformation and metamorphism, or described as highly fractured, or of limited areal extent were generally ranked as unfavorable. Potentially favorable rocks are primarily the high-grade metamorphic gneisses and granites. Sixteen areas were classified as being favorable for additional study. These areas are primarily large igneous granite plutons as follows: the Petersburg granite in Virginia; the Rolesville-Castallia, Churchland, and Landis plutons in North Carolina; the Liberty Hill, Winnsboro, and Ogden plutons in South Carolina; and the Siloam, Elberton, and six unnamed granite plutons in Georgia.

  11. Potential host shift of the small hive beetle (Aethina tumida Murray) to bumblebee colonies (Bombus impatiens Cresson)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This study examined the attractiveness of bumblebee, Bombus impatiens, colonies to small hive beetles, Aethina tumida, and explored potential defence mechanisms that bumblebees could use to repel small hive beetles. Our findings show that small hive beetles do not prefer honeybee, Apis mellifera, c...

  12. Assessing potential impacts of climate change on hydropower generation of three reservoirs in the Tagus River Basin under ensemble of climate projections

    NASA Astrophysics Data System (ADS)

    Lobanova, Anastasia; Koch, Hagen; Hattermann, Fred F.; Krysanova, Valentina

    2015-04-01

    The Tagus River basin is an important strategic water and energy source for Portugal and Spain. With an extensive network of 40 reservoirs with more than 15 hm3 capacity and numerous abstraction channels it is ensuring water supply for domestic and industrial usage, irrigation and hydropower production in Spain and Portugal. Growing electricity and water supply demands, over-regulation and construction of new dams, and large inter-basin water transfers aggravated by strong natural variability of climate and aridity of the catchment have already imposed significant pressures on the river. The substantial reduction of discharge, dropping during some months to zero in some parts of the catchment, is observed already now, and projected climatic change is expected to alter the water budget of the catchment further. As the water inflow is a fundamental defining factor in a reservoir operation and hydropower production, the latter are highly sensitive to shifts in water balance of the catchment, and hence to changes in climate. In this study we aim to investigate the effects of projected climate change on water inflows and hydropower generation of the three large reservoirs in the Tagus River Basin, and by that to assess their ability to cover electricity power demands and provide water supply under changed conditions, assuming present management strategies; hydropower and abstraction demands. The catchment scale, process-based eco-hydrological model SWIM was set up, calibrated and validated up to the Santarem gauge at the Tagus outlet, with the implementation of a reservoir module. The reservoir module is able to represent three reservoir operation management options, simulate water abstraction and provide rates of generated hydropower. In total, fifteen largest reservoirs in the Tagus River Basin were included in the model, calibrated and validated against observed inflow, stored water and outflow water volumes. The future climate projections were selected from the

  13. Human subtilase SKI-1/S1P is a master regulator of the HCV Lifecycle and a potential host cell target for developing indirect-acting antiviral agents.

    PubMed

    Olmstead, Andrea D; Knecht, Wolfgang; Lazarov, Ina; Dixit, Surjit B; Jean, François

    2012-01-01

    HCV infection is a major risk factor for liver cancer and liver transplantation worldwide. Overstimulation of host lipid metabolism in the liver by HCV-encoded proteins during viral infection creates a favorable environment for virus propagation and pathogenesis. In this study, we hypothesize that targeting cellular enzymes acting as master regulators of lipid homeostasis could represent a powerful approach to developing a novel class of broad-spectrum antivirals against infection associated with human Flaviviridae viruses such as hepatitis C virus (HCV), whose assembly and pathogenesis depend on interaction with lipid droplets (LDs). One such master regulator of cholesterol metabolic pathways is the host subtilisin/kexin-isozyme-1 (SKI-1)--or site-1 protease (S1P). SKI-1/S1P plays a critical role in the proteolytic activation of sterol regulatory element binding proteins (SREBPs), which control expression of the key enzymes of cholesterol and fatty-acid biosynthesis. Here we report the development of a SKI-1/S1P-specific protein-based inhibitor and its application to blocking the SREBP signaling cascade. We demonstrate that SKI-1/S1P inhibition effectively blocks HCV from establishing infection in hepatoma cells. The inhibitory mechanism is associated with a dramatic reduction in the abundance of neutral lipids, LDs, and the LD marker: adipose differentiation-related protein (ADRP)/perilipin 2. Reduction of LD formation inhibits virus assembly from infected cells. Importantly, we confirm that SKI-1/S1P is a key host factor for HCV infection by using a specific active, site-directed, small-molecule inhibitor of SKI-1/S1P: PF-429242. Our studies identify SKI-1/S1P as both a novel regulator of the HCV lifecycle and as a potential host-directed therapeutic target against HCV infection and liver steatosis. With identification of an increasing number of human viruses that use host LDs for infection, our results suggest that SKI-1/S1P inhibitors may allow development of

  14. Mineral potential for sediment-hosted copper deposits in the Islamic Republic of Mauritania (phase V, deliverable 75): Chapter K in Second projet de renforcement institutionnel du secteur minier de la République Islamique de Mauritanie (PRISM-II)

    USGS Publications Warehouse

    Taylor, Cliff D.; Giles, Stuart A.

    2015-01-01

    Although mineral occurrence data and descriptive geological information are adequate to delineate areas favorable for sediment-hosted copper deposits, this review indicates that potential for this type of deposit in Mauritania is low.

  15. Trophic status evaluation of TVA reservoirs

    SciTech Connect

    Placke, J.F.

    1983-10-01

    TVA tributary and mainstem reservoirs show generalized differences in morphometry, hydraulics, nutrient loads, and response to nutrient concentrations. Neither type of reservoir is strictly comparable to the natural lakes on which classical eutrophication studies have been based. The majority of published trophic state indices and standards (e.g., hypolimnetic dissolved oxygen depletion, Secchi depth, areas nutrient loading rates, in-reservoir phosphorus concentrations) are inappropriate for evaluation of some or all TVA reservoirs. No single trophic potential or trophic response variable summarizes the mechanisms and manifestations of eutrophication sufficiently to be used as a sole criterion for judging or regulating TVA reservoir water quality. Relative multivariate trophic state indices were developed for mainstem and tributary reservoirs. Ranking of the mainstem reservoirs is based on chlorophyll, macrophyte coverage, hydraulic retention time, reservoir area less than five feet deep, annual pool elevation drawdown, and Secchi depth. Based on available data, the rank from least eutrophic to most eutrophic is: Pickwick, Kentucky, Chickamauga, Nickajack, Wilson, Fort Loudoun, Watts Bar, Wheeler, and Guntersville Reservoirs. Ranking of the tributary reservoirs is based on chlorophyll, total phosphorus and total nitrogen weighted by the N:P ratio, and bio-available inorganic carbon levels. The rank from least eutrophic to most eutrophic is: Hiwassee, Blue Ridge, Chatuge, Norris and Fontana, Watauga, South Holston, Tims Ford, Cherokee, Douglas, and Boone Reservoirs. 130 references, 18 figures, 30 tables.

  16. Physical Properties of Known Exoplanet and Host Stars Within Ten Parsecs: X-ray/UV Fluxes, Rotation, Ages, and Potential of Habitability

    NASA Astrophysics Data System (ADS)

    Kullberg, Evan; Guinan, E. F.; Engle, S. G.

    2014-01-01

    We have compiled a catalogue of all exoplanets and their host stars within ten parsecs (32.6 ly) from the Sun. In addition to the physical properties of the exoplanets: estimated mass, orbital period, etc; we have compiled the properties of the host stars. These include: spectral class, effective temperature, luminosity, metallicity, period of rotation, etc. For the stars that have X-Ray observations and UV spectrophotometry, we have measured the X-UV irradiances at the distance of the exoplanets orbiting them. In addition, we estimated the ages of the stellar systems using our Rotation-Age-Activity relationship developed at Villanova over the last ten years. These results were used to evaluate the potential habitability of the exoplanets with particular attention is paid to stars with Super-Earth planets orbiting within the habitable zones of their host stars. These include GJ 581, GJ 876, Tau Ceti, and HD 20794. We focus on the GJ 581 system, since it contains at least two Super-Earth exoplanets on the inner and outer boundaries of the habitable zone (GJ 581c and GJ 581d respectively), and because the host star has recently been observed with the SWIFT satellite and detected to be an X-Ray source with a log(LX 26.1 erg/s (Vitale and France A&A 2013). We also utilized the recently secured FUV-UV HIST/COS spectrophotometry (France et al. ApJ 2013) to compute X-Ray to UV irradiances at GJ 581c and GJ 581d. In addition to the XUV irradiance studies, we have estimated the age of the GJ 581 system from the: rotational period, Lyman Alpha Emission, Mg-II emission, Ca-II emission; using our Rotation-Age-Activity relationship from our Living with a Red Dwarf program. We calculate an average age determination of 7.5±2 Gyr. We discuss how these results affect the relevance of these stars as potential destinations of interstellar travel in the future. We acknowledge the support for this study from NSF/RUI grant AST-1009903, and NASA/CHANDRA GO1-12024X, GO2-13020X and HST

  17. Evaluation of and new completion recommendations for a fractured, crystalline, igneous reservoir, Texas Panhandle

    SciTech Connect

    Weimer, B.A.; Manwaring, M.S. )

    1987-02-01

    In the Panhandle field of Texas, the lowest stratigraphic producing formation is a crystalline basement rock. The igneous rock is productive when it is naturally fractured sufficiently to hold hydrocarbons trapped in the same structure as the expansive Panhandle field. Research work to understand the crystalline reservoir better focused on the fracturing, mineralogy, and production potential of the basement interval. This trap is a true fractured reservoir; it has no more than 1% primary porosity in the nonfractured rock. The mineralogy of the host rock and fracture-filling minerals was established from drill and core samples. The host rock is a complex of granodiorite, dacite, and gabbroic diorite. Scanning electron microscopy, x-ray diffraction, and optical work confirmed the occurrence of at least 12 secondary fracture-fill minerals. Fluid inclusion analysis established formation temperatures for many of the minerals and allowed postulation of a detailed sequence of formation. The character of the fracture in differing host petrologies and the occurrence of clay minerals coating fracture surfaces were deemed to be critical factors in hydrocarbon production. New and specific enhancement treatments were designed for the subject reservoir, and these recommendations were used in a test well. Results from the test were favorable and appear to confirm the ideas formed from this work. The new recommended treatments are less expensive than current practices and indicate potential for greater ultimate recoveries of oil.

  18. Carbon Sequestration in Unconventional Reservoirs: Advantages and Limitations

    NASA Astrophysics Data System (ADS)

    Zakharova, N. V.; Slagle, A. L.; Goldberg, D.

    2014-12-01

    by temperature difference between injected fluid and the host formation, may be particularly important for reservoir stability in high-temperature offshore locations. Overall, unconventional reservoirs in offshore locations offer the potential benefits of vast and safe storage for captured CO2 emissions.

  19. Elongation Factor-1α Is a Novel Protein Associated with Host Cell Invasion and a Potential Protective Antigen of Cryptosporidium parvum *

    PubMed Central

    Matsubayashi, Makoto; Teramoto-Kimata, Isao; Uni, Shigehiko; Lillehoj, Hyun S.; Matsuda, Haruo; Furuya, Masaru; Tani, Hiroyuki; Sasai, Kazumi

    2013-01-01

    The phylum Apicomplexa comprises obligate intracellular parasites that infect vertebrates. All invasive forms of Apicomplexa possess an apical complex, a unique assembly of organelles localized to the anterior end of the cell and involved in host cell invasion. Previously, we generated a chicken monoclonal antibody (mAb), 6D-12-G10, with specificity for an antigen located in the apical cytoskeleton of Eimeria acervulina sporozoites. This antigen was highly conserved among Apicomplexan parasites, including other Eimeria spp., Toxoplasma, Neospora, and Cryptosporidium. In the present study, we identified the apical cytoskeletal antigen of Cryptosporidium parvum (C. parvum) and further characterized this antigen in C. parvum to assess its potential as a target molecule against cryptosporidiosis. Indirect immunofluorescence demonstrated that the reactivity of 6D-12-G10 with C. parvum sporozoites was similar to those of anti-β- and anti-γ-tubulins antibodies. Immunoelectron microscopy with the 6D-12-G10 mAb detected the antigen both on the sporozoite surface and underneath the inner membrane at the apical region of zoites. The 6D-12-G10 mAb significantly inhibited in vitro host cell invasion by C. parvum. MALDI-TOF/MS and LC-MS/MS analysis of tryptic peptides revealed that the mAb 6D-12-G10 target antigen was elongation factor-1α (EF-1α). These results indicate that C. parvum EF-1α plays an essential role in mediating host cell entry by the parasite and, as such, could be a candidate vaccine antigen against cryptosporidiosis. PMID:24085304

  20. Potential of Pest and Host Phenological Data in the Attribution of Regional Forest Disturbance Detection Maps According to Causal Agent

    NASA Technical Reports Server (NTRS)

    Spruce, Joseph; Hargrove, William; Norman Steve; Christie, William

    2014-01-01

    Near real time forest disturbance detection maps from MODIS NDVI phenology data have been produced since 2010 for the conterminous U.S., as part of the on-line ForWarn national forest threat early warning system. The latter has been used by the forest health community to identify and track many regional forest disturbances caused by multiple biotic and abiotic damage agents. Attribution of causal agents for detected disturbances has been a goal since project initiation in 2006. Combined with detailed cover type maps, geospatial pest phenology data offer a potential means for narrowing the candidate causal agents responsible for a given biotic disturbance. U.S. Aerial Detection Surveys (ADS) employ such phenology data. Historic ADS products provide general locational data on recent insect-induced forest type specific disturbances that may help in determining candidate causal agents for MODIS-based disturbance maps, especially when combined with other historic geospatial disturbance data (e.g., wildfire burn scars and drought maps). Historic ADS disturbance detection polygons can show severe and extensive regional forest disturbances, though they also can show polygons with sparsely scattered or infrequent disturbances. Examples will be discussed that use various historic disturbance data to help determine potential causes of MODIS-detected regional forest disturbance anomalies.

  1. Modeling CO2 Sequestration in Saline Aquifer and Depleted Oil Reservoirs to Evaluate Regional CO2 Sequestration Potential of Ozark Plateau Aquifer System, South-Central Kansas

    NASA Astrophysics Data System (ADS)

    Watney, W. L.; Rush, J.

    2011-12-01

    The Paleozoic-age Ozark Plateau Aquifer System (OPAS) in southern Kansas consists of a thick (>450 m) and deeply buried (>1 km) succession of Cambro-Ordovician Arbuckle Group strata (dolomite) overlain by Lower Ordovician to Lower Carboniferous-age carbonate, chert, and shale. The Arbuckle Group is a thick widespread saline aquifer in southern Kansas. A 500 meter core of the OPAS interval and immediate overlying Pennsylvanian shale caprock were cored in early 2011 in the BEREXCO Wellington KGS #1-32 well in Wellington Field, a nearly depleted oil field in Sumner County, in south-central Kansas. An exhaustive set of modern logs were run in the KGS #1-32 well including chemical, microresistivity imaging, dipole sonic, nuclear magnetic resonance, and standard porosity and resistivity wireline logs. In addition, routine and special core analyses provide vital means to calibrate these logs. Core also provide vital chemical analyses and rock samples to run flow experiments, including in situ conditions, to establish reaction kinetics of rock and connate brines with CO2. Core and logs also provide the means to calibrate a 26 km2 multicomponent 3D seismic survey that was acquired in Wellington Field in 2010. Studies of four oil fields, also part of this project, are underway in southwestern Kansas to provide additional calibration points for the western part of the regional study that covers 65,000 km2 where CO2 sequestration capacity will be measured. Several hundred deep wells have been identified to serve as type wells in the regional study area. Well logs and sample descriptions are being digitized, correlated, and mapped to define distribution of aquifers, oil reservoirs, and caprocks. Drill stem test data have been analyzed for deep wells to establish that the Arbuckle is an open aquifer connected to surface exposures 100s of km to east in central Missouri. Over 500 km2 of 3D seismic have been donated by industrial partners to aid in understanding fault and fracture

  2. Chickamauga reservoir embayment study - 1990

    SciTech Connect

    Meinert, D.L.; Butkus, S.R.; McDonough, T.A.

    1992-12-01

    The objectives of this report are three-fold: (1) assess physical, chemical, and biological conditions in the major embayments of Chickamauga Reservoir; (2) compare water quality and biological conditions of embayments with main river locations; and (3) identify any water quality concerns in the study embayments that may warrant further investigation and/or management actions. Embayments are important areas of reservoirs to be considered when assessments are made to support water quality management plans. In general, embayments, because of their smaller size (water surface areas usually less than 1000 acres), shallower morphometry (average depth usually less than 10 feet), and longer detention times (frequently a month or more), exhibit more extreme responses to pollutant loadings and changes in land use than the main river region of the reservoir. Consequently, embayments are often at greater risk of water quality impairments (e.g. nutrient enrichment, filling and siltation, excessive growths of aquatic plants, algal blooms, low dissolved oxygen concentrations, bacteriological contamination, etc.). Much of the secondary beneficial use of reservoirs occurs in embayments (viz. marinas, recreation areas, parks and beaches, residential development, etc.). Typically embayments comprise less than 20 percent of the surface area of a reservoir, but they often receive 50 percent or more of the water-oriented recreational use of the reservoir. This intensive recreational use creates a potential for adverse use impacts if poor water quality and aquatic conditions exist in an embayment.

  3. Validation of an interactive map assessing the potential spread of Galba truncatula as intermediate host of Fasciola hepatica in Switzerland.

    PubMed

    Baggenstos, Rhea; Dahinden, Tobias; Torgerson, Paul R; Bär, Hansruedi; Rapsch, Christina; Knubben-Schweizer, Gabriela

    2016-01-01

    Bovine fasciolosis, caused by Fasciola hepatica, is widespread in Switzerland. The risk regions were modelled in 2008 by an interactive map, showing the monthly potential risk of transmission of F. hepatica in Switzerland. As this map is based on a mathematical model, the aim of the present study was to evaluate the interactive map by means of a field survey taking different data sources into account. It was found that the interactive map has a sensitivity of 40.7-88.9%, a specificity of 11.4-18.8%, a positive predictive value of 26.7-51.4%, and a negative predictive value of 13.1-83.6%, depending on the source of the data. In conclusion, the grid of the interactive map (100 x 100 m) does not reflect enough detail and the underlying model of the interactive map is lacking transmission data. PMID:27245800

  4. Evaluation of carcinogenic potential of two nitro-musk derivatives, musk xylene and musk tibetene in a host-mediated in vivo/in vitro assay system.

    PubMed

    Apostolidis, Savvas; Chandra, Tamir; Demirhan, Ilhan; Cinatl, J; Doerr, Hans Wilhelm; Chandra, Angelika

    2002-01-01

    We have developed a host-mediated assay system for detection of the transforming activity of chemical carcinogens on peritoneal macrophages. Directly, as well as indirectly acting carcinogenic substances, administered intraperitoneally to NMRI mice, could be examined in this way. Resident macrophages were recovered by peritoneal lavage from treated and untreated mice and cultured in soft agar. After 5-6 days the normal and transformed cells could be distinguished. Statistical analysis comparing cells from musk xylene- or musk tibetene-treated animals with those from control mice proved that the test is positive. Musk xylene and musk tibetene revealed a cell-transforming potential that showed a dose-dependent response in our host-mediated assay system. We have succeeded in establishing permanent cell lines from mice treated with musk xylene, or musk tibetene. The oncogenicity of these cell lines was tested in athymic nu/nu mice. Animals injected subcutaneously with these cells (1 x 10(6) cells at each side of the neck) developed tumors at the injection sites within 3 weeks of treatment. The experimental data reported here lead to the conclusion that musk xylene, as well as musk tibetene, have carcinogenic activity. In contrast to the negative results for mutagenicity and genotoxicity, a non-genotoxic mechanism for the carcinogenicity of musk xylene and musk tibetene must be considered. PMID:12529978

  5. A novel method for inducing nerve growth via modulation of host resting potential: gap junction-mediated and serotonergic signaling mechanisms.

    PubMed

    Blackiston, Douglas J; Anderson, George M; Rahman, Nikita; Bieck, Clara; Levin, Michael

    2015-01-01

    A major goal of regenerative medicine is to restore the function of damaged or missing organs through the implantation of bioengineered or donor-derived components. It is necessary to understand the signals and cues necessary for implanted structures to innervate the host, as organs devoid of neural connections provide little benefit to the patient. While developmental studies have identified neuronal pathfinding molecules required for proper patterning during embryogenesis, strategies to initiate innervation in structures transplanted at later times or alternate locations remain limited. Recent work has identified membrane resting potential of nerves as a key regulator of growth cone extension or arrest. Here, we identify a novel role of bioelectricity in the generation of axon guidance cues, showing that neurons read the electric topography of surrounding cells, and demonstrate these cues can be leveraged to initiate sensory organ transplant innervation. Grafts of fluorescently labeled embryological eye primordia were used to produce ectopic eyes in Xenopus laevis tadpoles. Depolarization of host tissues through anion channel activation or other means led to a striking hyperinnervation of the body by these ectopic eyes. A screen of possible transduction mechanisms identified serotonergic signaling to be essential for hyperinnervation to occur, and our molecular data suggest a possible model of bioelectrical control of the distribution of neurotransmitters that guides nerve growth. Together, these results identify the molecular components of bioelectrical signaling among cells that regulates axon guidance, and suggest novel biomedical and bioengineering strategies for triggering neuronal outgrowth using ion channel drugs already approved for human use. PMID:25449797

  6. Transient Receptor Potential Channel 1 Deficiency Impairs Host Defense and Proinflammatory Responses to Bacterial Infection by Regulating Protein Kinase Cα Signaling.

    PubMed

    Zhou, Xikun; Ye, Yan; Sun, Yuyang; Li, Xuefeng; Wang, Wenxue; Privratsky, Breanna; Tan, Shirui; Zhou, Zongguang; Huang, Canhua; Wei, Yu-Quan; Birnbaumer, Lutz; Singh, Brij B; Wu, Min

    2015-08-01

    Transient receptor potential channel 1 (TRPC1) is a nonselective cation channel that is required for Ca(2+) homeostasis necessary for cellular functions. However, whether TRPC1 is involved in infectious disease remains unknown. Here, we report a novel function for TRPC1 in host defense against Gram-negative bacteria. TRPC1(-/-) mice exhibited decreased survival, severe lung injury, and systemic bacterial dissemination upon infection. Furthermore, silencing of TRPC1 showed decreased Ca(2+) entry, reduced proinflammatory cytokines, and lowered bacterial clearance. Importantly, TRPC1 functioned as an endogenous Ca(2+) entry channel critical for proinflammatory cytokine production in both alveolar macrophages and epithelial cells. We further identified that bacterium-mediated activation of TRPC1 was dependent on Toll-like receptor 4 (TLR4), which induced endoplasmic reticulum (ER) store depletion. After activation of phospholipase Cγ (PLC-γ), TRPC1 mediated Ca(2+) entry and triggered protein kinase Cα (PKCα) activity to facilitate nuclear translocation of NF-κB/Jun N-terminal protein kinase (JNK) and augment the proinflammatory response, leading to tissue damage and eventually mortality. These findings reveal that TRPC1 is required for host defense against bacterial infections through the TLR4-TRPC1-PKCα signaling circuit. PMID:26031335

  7. Transient Receptor Potential Channel 1 Deficiency Impairs Host Defense and Proinflammatory Responses to Bacterial Infection by Regulating Protein Kinase Cα Signaling

    PubMed Central

    Zhou, Xikun; Ye, Yan; Sun, Yuyang; Li, Xuefeng; Wang, Wenxue; Privratsky, Breanna; Tan, Shirui; Zhou, Zongguang; Huang, Canhua; Wei, Yu-Quan; Birnbaumer, Lutz

    2015-01-01

    Transient receptor potential channel 1 (TRPC1) is a nonselective cation channel that is required for Ca2+ homeostasis necessary for cellular functions. However, whether TRPC1 is involved in infectious disease remains unknown. Here, we report a novel function for TRPC1 in host defense against Gram-negative bacteria. TRPC1−/− mice exhibited decreased survival, severe lung injury, and systemic bacterial dissemination upon infection. Furthermore, silencing of TRPC1 showed decreased Ca2+ entry, reduced proinflammatory cytokines, and lowered bacterial clearance. Importantly, TRPC1 functioned as an endogenous Ca2+ entry channel critical for proinflammatory cytokine production in both alveolar macrophages and epithelial cells. We further identified that bacterium-mediated activation of TRPC1 was dependent on Toll-like receptor 4 (TLR4), which induced endoplasmic reticulum (ER) store depletion. After activation of phospholipase Cγ (PLC-γ), TRPC1 mediated Ca2+ entry and triggered protein kinase Cα (PKCα) activity to facilitate nuclear translocation of NF-κB/Jun N-terminal protein kinase (JNK) and augment the proinflammatory response, leading to tissue damage and eventually mortality. These findings reveal that TRPC1 is required for host defense against bacterial infections through the TLR4-TRPC1-PKCα signaling circuit. PMID:26031335

  8. Potential human health risk by 234,238U and 210Po due to consumption of fish from the "Luis L. Leon" reservoir (Northern Mexico)

    NASA Astrophysics Data System (ADS)

    Luna-Porres, M. Y.; Rodríguez-Villa, M. A.; Herrera-Peraza, E.; Cabral-Lares, M.; Renteria-Villalobos, M.; Montero-Cabrera, M. E.

    2014-07-01

    The Conchos River is one of the most important in northern Mexico and the main surface waterway in the arid state of Chihuahua. The Luis L. Leon dam produces the Luis L. Leon Reservoir, which is the last major reservoir before the Conchos River enters the Rio Grande at the Texas-Chihuahua border. Activity concentrations (AC) of 234,238U and 210Po in fillet and liver of three stocked fish species (Lepomis cyanellus, Cyprinus carpio and Ictalurus furcatus), as well as in water from the Luis L. Leon reservoir were determined. 238U and 234U ACs in fillet samples showed values of 0.007-0.014 and 0.01-0.02 Bq kg-1 wet weight (ww), respectively. Liver samples for Lepomis cyanellus, Cyprinus carpio and Ictalurus furcatus species, present 210Po AC of 1.16-3.26 0.70-1.13 and 0.93-1.37 Bqṡkg-1 ww. The elemental Bioaccumulation Factor (BAF) for fish tissues respect to their concentrations in water was determined. Lepomis cyanellus species showed the highest BAF for total uranium in fillet, with value 1.5. The annual effective dose for uranium in adults by fish consumption in this work ranged from 4.46×10-3 to 3.68×10-2 μSvṡyear-1. The difference in concentrations of uranium in fillet among the studied species is likely primarily due to their differences in diet and habitat.

  9. Earthquakes and depleted gas reservoirs: which comes first?

    NASA Astrophysics Data System (ADS)

    Mucciarelli, M.; Donda, F.; Valensise, G.

    2015-10-01

    While scientists are paying increasing attention to the seismicity potentially induced by hydrocarbon exploitation, so far, little is known about the reverse problem, i.e. the impact of active faulting and earthquakes on hydrocarbon reservoirs. The 20 and 29 May 2012 earthquakes in Emilia, northern Italy (Mw 6.1 and 6.0), raised concerns among the public for being possibly human-induced, but also shed light on the possible use of gas wells as a marker of the seismogenic potential of an active fold and thrust belt. We compared the location, depth and production history of 455 gas wells drilled along the Ferrara-Romagna arc, a large hydrocarbon reserve in the southeastern Po Plain (northern Italy), with the location of the inferred surface projection of the causative faults of the 2012 Emilia earthquakes and of two pre-instrumental damaging earthquakes. We found that these earthquake sources fall within a cluster of sterile wells, surrounded by productive wells at a few kilometres' distance. Since the geology of the productive and sterile areas is quite similar, we suggest that past earthquakes caused the loss of all natural gas from the potential reservoirs lying above their causative faults. To validate our hypothesis we performed two different statistical tests (binomial and Monte Carlo) on the relative distribution of productive and sterile wells, with respect to seismogenic faults. Our findings have important practical implications: (1) they may allow major seismogenic sources to be singled out within large active thrust systems; (2) they suggest that reservoirs hosted in smaller anticlines are more likely to be intact; and (3) they also suggest that in order to minimize the hazard of triggering significant earthquakes, all new gas storage facilities should use exploited reservoirs rather than sterile hydrocarbon traps or aquifers.

  10. Spatio-temporal distribution of cell-bound and dissolved geosmin in Wahnbach Reservoir: Causes and potential odour nuisances in raw water.

    PubMed

    Jähnichen, Sabine; Jäschke, Kathrin; Wieland, Falk; Packroff, Gabriele; Benndorf, Jürgen

    2011-10-15

    In many lakes and reservoirs, problems caused by off-flavours are known to be particularly associated with the occurrence of planktonic and benthic cyanobacteria. Frequently observed objectionable taste and odorous products of cyanobacteria are geosmin and 2-methylisoborneol. Investigations focused on the littoral zone of Wahnbach Reservoir (Germany) revealed that benthic cyanobacteria were present in this oligotrophic drinking water reservoir. Benthic cyanobacteria were found in the depth horizon between 1.75 m and 11 m, particularly on south-exposed slopes. This spatial distribution indicates a possible key role of the underwater light climate. Moreover, cell-bound and dissolved geosmin were detected in corresponding littoral samples. Both fractions were subjected to spatial and primarily temporal variations with maximum concentrations at the end of summer. However, a substantial lowering of the water level caused a diminution of cyanobacterial growth. Due to the drawdown of the water level concentrations of cell-bound geosmin and pigments (as a proxy of cyanobacterial biomass) were remarkably reduced, and dissolved geosmin was never detected during this phase. Except for the influence of water level fluctuation no other abiotic variables had a significant influence on pigment and geosmin concentrations. From geosmin concentrations detected in the littoral zone, the probability of serious episodes of odour events in the raw water of the Wahnbach Reservoir was estimated. Hence, the probability that the raw water was affected by geosmin was minor, which was supported by routine flavour profiles. Nevertheless, the study shows that odorous episodes caused by benthic cyanobacteria are likely to develop even in an oligotrophic lake or reservoir when these cyanobacteria, and consequently odorous production, proliferate. In principle, such a proliferation cannot be excluded as nutrients are available from the sediment pore water, and underwater light at the sediment

  11. Weedy hosts and prevalence of potential leafhopper vectors (Hemiptera: Cicadellidae) of a phytoplasma (16SrIX group) associated with Huanglongbing symptoms in citrus groves.

    PubMed

    Marques, R N; Teixeira, D C; Yamamoto, P T; Lopes, J R S

    2012-04-01

    Huanglongbing (HLB) is a severe citrus (Citrus spp.) disease associated with the bacteria genus Candidatus Liberibacter, detected in Brazil in 2004. Another bacterium was found in association with HLB symptoms and characterized as a phytoplasma belonging to the 16SrIX group. The objectives of this study were to identify potential leafhopper vectors of the HLB-associated phytoplasma and their host plants. Leafhoppers were sampled every other week for 12 mo with sticky yellow cards placed at two heights (0.3 and 1.5 m) in the citrus tree canopy and by using a sweep net in the ground vegetation of two sweet orange, Citrus sinensis (L.) Osbeck, groves infected by the HLB-phytoplasma in São Paulo state. Faunistic analyses indicated one Agalliinae (Agallia albidula Uhler) and three Deltocephalinae [Balclutha hebe (Kirkaldy), Planicephalus flavicosta (Stål), and Scaphytopius (Convelinus) marginelineatus (Stål)] species, as the most abundant and frequent leafhoppers (Hemiptera: Cicadellidae). Visual observations indicated an association of leafhopper species with some weeds and the influence of weed species composition on leafhopper abundance in low-lying vegetation. S. marginelineatus and P. flavicosta were more frequent on Sida rhombifolia L. and Althernantera tenella Colla, respectively, whereas A. albidula was observed more often on Conyza bonariensis (L.) Cronq. and B. hebe only occurred on grasses. DNA samples of field-collected S. marginelineatus were positive by polymerase chain reaction and sequencing tests for the presence of the HLB-phytoplasma group, indicating it as a potential vector. The association of leafhoppers with their hosts may be used in deciding which management strategies to adopt against weeds and diseases in citrus orchards. PMID:22606800

  12. Pm-miR-133 hosting in one potential lncRNA regulates RhoA expression in pearl oyster Pinctada martensii.

    PubMed

    Zheng, Zhe; Huang, RongLian; Tian, RongRong; Jiao, Yu; Du, Xiaodong

    2016-10-15

    Long non-coding RNAs (LncRNAs) are abundant in the genome of higher forms of eukaryotes and implicated in regulating the diversity of biological processes partly because they host microRNAs (miRNAs), which are repressors of target gene expression. In vertebrates, miR-133 regulates the differentiation and proliferation of cardiac and skeletal muscles. Pinctada martensii miR-133 (pm-miR-133) was identified in our previous research through Solexa deep sequencing. In the present study, the precise sequence of mature pm-miR-133 was validated through miR-RACE. Stem loop qRT-PCR analysis demonstrated that mature pm-miR-133 was constitutively expressed in the adductor muscle, gonad, hepatopancreas, mantle, foot, and gill of P. martensii. Among these tissues, the adductor muscle exhibited the highest pm-miR-133 expression. Target analysis indicated that pm-RhoA was the potential regulatory target of pm-miR-133. Bioinformatics analyses revealed that a potential LncRNA (designated as Lnc133) with a mature pm-miR-133 could generate a hairpin structure that was highly homologous to that of Lottia gigantea. Lnc133 was also highly expressed in the adductor muscle, gill, hepatopancreas, and gonad. Phylogenetic analysis further showed that the miR-133s derived from chordate and achordate were separated into two classes. Therefore, Lnc133 hosting pm-miR-133 could be involved in regulating the cell proliferation of adductor muscles by targeting pm-RhoA. PMID:27363668

  13. Functional Analysis of the Host Defense Peptide Human Beta Defensin-1: New Insight into Its Potential Role in Cancer

    PubMed Central

    Bullard, Rebecca S.; Gibson, Willietta; Bose, Sudeep; Belgrave, Jamila K.; Eaddy, Andre C.; Wright, Corey J.; Hazen-Martin, Debra J.; Lage, Janice M.; Keane, Thomas E.; Ganz, Tomas A.; Donald, Carlton D.

    2007-01-01

    Although it is known that innate immunity is key for protecting the body against foreign agents such as bacteria, little is known about elements of the innate immune system that have anti-tumor activity. Human Beta Defensin-1 (hBD-1), an important component of the innate immune response, is lost at high frequencies in malignant prostatic tissue, while high levels of expression are maintained in adjacent benign regions. In prostate carcinoma, frequent genetic alterations occur in the 8p22-23 region and several studies indicate there may be multiple tumor suppressor genes present within this region. The high incidence of loss of hBD-1 expression in prostate cancer, along with its chromosomal location of 8p23.2, raised the possibility that it may play a role in tumor suppression. To gain insight as to its function in prostate cancer, hBD-1 was cloned and ectopically expressed in four prostate cancer cell lines. Induction of hBD-1 expression resulted in a decrease in cellular growth in DU145 and PC3 cells. However, hBD-1 has no effect on the growth of androgen receptor (AR) positive LNCaP prostate cancer cells, but was again growth suppressive to PC3 cells with ectopic AR expression (PC3/AR+). hBD-1 also caused rapid induction of cytolysis and caspase-mediated apoptosis in DU145 and PC3 prostate cancer cells. Although the regulation of hBD-1 was not addressed in this study, our preliminary data demonstrated that the pathways involoved may include cMYC and/or PAX2. Data presented here are the first to provide evidence of its potential role in prostate cancer cell death. PMID:17868871

  14. Non-invasive microelectrode potassium flux measurements as a potential tool for early recognition of virus-host compatibility in plants

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Understanding mechanisms of virus-host compatibility and its early recognition is of significant economic importance. Net Ca2+ and K+ fluxes were measured from mesophyll tissue of host (potato, tomato, tobacco) and non-host (sugar beet and periwinkle) plants in response to infection with Potato viru...

  15. Host plants of Brevipalpus californicus, B. obovatus, and B. phoenicis (Acari: Tenuipalpidae) and their potential involvement in the spread of viral diseases vectored by these mites.

    PubMed

    Childers, Carl C; Rodrigues, Jose Carlos V; Welbourn, Warren C

    2003-01-01

    The family Tenuipalpidae has over 622 species in 30 genera described worldwide. A total of 928 plant species in 513 genera within 139 families are recorded hosts of one or more of the following species: Brevipalpus californicus (Banks), B. obovatus Donnadieu, and B. phoenicis (Geijskes). B. californicus has 316 plant species reported as hosts compared with 451 and 486 host plants for B. obovatus and B. phoenicis, respectively. There are 67 genera of plants within 33 families that are reported hosts of only B. californicus, 119 genera within 55 plant families that are hosts of only B. obovatus, and 118 genera of plants within 64 families that are hosts of only B. phoenicis. There are 14 genera of plants within 12 families that are hosts to both B. californicus and B. obovatus, while there are 40 genera of host plants within 26 families that are hosts for both B. californicus and B. phoenicis. A total of 70 genera of host plants within 39 families have been reported as hosts of both B. obovatus and B. phoenicis, while 77 genera of plants within 44 families have been reported as hosts of all three Brevipalpus species. Geographical differences in the three species of Brevipalpus identified on different plant species within the same genus are common. PMID:14756412

  16. Seismic determination of saturation in fractured reservoirs

    USGS Publications Warehouse

    Brown, R.L.; Wiggins, M.L.; Gupta, A.

    2002-01-01

    Detecting the saturation of a fractured reservoir using shear waves is possible when the fractures have a geometry that induces a component of movement perpendicular to the fractures. When such geometry is present, vertically traveling shear waves can be used to examine the saturation of the fractured reservoir. Tilted, corrugated, and saw-tooth fracture models are potential examples.

  17. Stochastic Model of Fracture Frequency Heterogeneity in a Welded Tuff EGS reservoir, Snake River Plain, Idaho, USA

    NASA Astrophysics Data System (ADS)

    Moody, A.; Fairley, J. P., Jr.

    2014-12-01

    In light of recent advancements in reservoir enhancement and injection tests at active geothermal fields, there is interest in investigating the geothermal potential of widespread subsurface welded tuffs related to caldera collapse on the Snake River Plain (SRP). Before considering stimulation strategies, simulating heat extraction from the reservoir under in-situ fracture geometries will give a first-order estimation of extractable heat. With only limited deep boreholes drilled on the SRP, few analyses of the bulk hydrologic properties of the tuffs exist. Acknowledging the importance of the spatial heterogeneity of fractures to the permeability and injectivity of reservoirs hosted in impermeable volcanic units, we present fracture distributions from ICDP hole 5036-2A drilled as a part of Project HOTSPOT. The core documents more than 1200 m of largely homogeneous densely welded tuff hosting an isothermal warm-water reservoir at ~60˚ C. Multiple realizations of a hypothetical reservoir are created using sequential indicator algorithms that honor the observed vertical fracture frequency statistics. Results help form criteria for producing geothermal energy from the SRP.

  18. Reservoir characterization of Pennsylvanian Sandstone Reservoirs. Annual report

    SciTech Connect

    Kelkar, M.

    1992-09-01

    This annual report describes the progress during the second year of a project on Reservoir Characterization of Pennsylvanian Sandstone Reservoirs. The report is divided into three sections: (i) reservoir description and scale-up procedures; (ii) outcrop investigation; (iii) in-fill drilling potential. The first section describes the methods by which a reservoir can be characterized, can be described in three dimensions, and can be scaled up with respect to its properties, appropriate for simulation purposes. The second section describes the progress on investigation of an outcrop. The outcrop is an analog of Bartlesville Sandstone. We have drilled ten wells behind the outcrop and collected extensive log and core data. The cores have been slabbed, photographed and the several plugs have been taken. In addition, minipermeameter is used to measure permeabilities on the core surface at six inch intervals. The plugs have been analyzed for the permeability and porosity values. The variations in property values will be tied to the geological descriptions as well as the subsurface data collected from the Glen Pool field. The third section discusses the application of geostatistical techniques to infer in-fill well locations. The geostatistical technique used is the simulated annealing technique because of its flexibility. One of the important reservoir data is the production data. Use of production data will allow us to define the reservoir continuities, which may in turn, determine the in-fill well locations. The proposed technique allows us to incorporate some of the production data as constraints in the reservoir descriptions. The technique has been validated by comparing the results with numerical simulations.

  19. Status of Norris Reservoir

    SciTech Connect

    Not Available

    1990-09-01

    This is one in a series of reports prepared by the Tennessee Valley Authority (TVA) for those interested in the conditions of TVA reservoirs. This overview of Norris Reservoir summarizes reservoir and watershed characteristics, reservoir uses, conditions that impair reservoir uses, water quality and aquatic biological conditions, and activities of reservoir management agencies. This information was extracted from the most up-to-date publications and data available, and from interviews with water resource professionals in various federal, state, and local agencies, and in public and private water supply and wastewater treatment facilities. 14 refs., 3 figs.

  20. Diagnostic Potential of Novel Salivary Host Biomarkers as Candidates for the Immunological Diagnosis of Tuberculosis Disease and Monitoring of Tuberculosis Treatment Response

    PubMed Central

    Jacobs, Ruschca; Maasdorp, Elizna; Malherbe, Stephanus; Loxton, Andre G.; Stanley, Kim; van der Spuy, Gian; Walzl, Gerhard

    2016-01-01

    Background There is an urgent need for new tools for the early diagnosis of TB disease and monitoring of the response to treatment, especially in resource-constrained settings. We investigated the usefulness of host markers detected in saliva as candidate biomarkers for the immunological diagnosis of TB disease and monitoring of treatment response. Methods We prospectively collected saliva samples from 51 individuals that presented with signs and symptoms suggestive of TB disease at a health centre in Cape Town, South Africa, prior to the establishment of a clinical diagnosis. Patients were later classified as having TB disease or other respiratory disease (ORD), using a combination of clinical, radiological and laboratory findings. We evaluated the concentrations of 69 host markers in saliva samples using a multiplex cytokine platform, and assessed the diagnostic potentials of these markers by receiver operator characteristics (ROC) curve analysis, and general discriminant analysis. Results Out of the 51 study participants, 18 (35.4%) were diagnosed with TB disease and 12 (23.5%) were HIV infected. Only two of the 69 host markers that were evaluated (IL-16 and IL-23) diagnosed TB disease individually with area under the ROC curve ≥0.70. A five-marker biosignature comprising of IL-1β, IL-23, ECM-1, HCC1 and fibrinogen diagnosed TB disease with a sensitivity of 88.9% (95% CI,76.7–99.9%) and specificity of 89.7% (95% CI, 60.4–96.6%) after leave-one-out cross validation, regardless of HIV infection status. Eight-marker biosignatures performed with a sensitivity of 100% (95% CI, 83.2–100%) and specificity of 95% (95% CI, 68.1–99.9%) in the absence of HIV infection. Furthermore, the concentrations of 11 of the markers changed during treatment, indicating that they may be useful in monitoring of TB treatment response. Conclusion We have identified novel salivary biosignatures which may be useful in the diagnosis of TB disease and monitoring of the response to

  1. Hemiuroid trematode sporocysts are undetected by hemocytes of their intermediate host, the ark cockle Anadara trapezia: potential role of surface carbohydrates in successful parasitism.

    PubMed

    Kawasaki, Minami; Delamare-Deboutteville, Jerome; Dang, Cecile; Barnes, Andrew C

    2013-12-01

    In order to establish a successful relationship with their hosts, parasites must subvert or evade immune defences. Cockle Anadara trapezia and Sydney Rock oyster (SRO) Saccostrea glomerata live in the same location but only ark cockles are infected by sporocysts of hemiuroid trematode. This provides an opportunity to explore differing interactions between the parasite and the immune system of susceptible and refractive hosts. Rapid migration and encapsulation of sporocysts was observed by SRO hemocytes but not by cockle hemocytes. This migration/encapsulation was inhibited by N-acetylglucosamine or N-acetylgalactosamine but not by the other sugars, implicating specific surface carbohydrates in immune detection. Effector responses of hemocytes were investigated in vitro in terms of production of reactive oxygen production (ROS). Hemocytes of both species strongly reacted to Zymosan, but only SRO hemocytes responded to live sporocysts. Neither species' hemocytes produced ROS in the presence of dead/fixed sporocysts, and there was no suppression of Zymosan-induced respiratory burst by sporocysts. This suggests that immune escape is mediated by avoiding encapsulation, perhaps through molecular mimicry. Membrane-shaving with proteases indicated that sporocyst surface proteins are not a key factors in hemocytic detection. Surface carbohydrates of SRO and cockle hemocytes and of sporocysts were profiled with a panel of biotinylated lectins. This revealed substantial differences between cockle and SRO hemocytes, but greater similarity between cockle hemocytes and sporocysts. Results suggest that surface carbohydrates play an integral role in hemocyte immunorecognition and that surface carbohydrate molecular mimicry is a potential strategy for immune evasion in cockles by hemiuroid trematode sporocysts. PMID:24161777

  2. The Ocean as a Global Reservoir of Antibiotic Resistance Genes

    PubMed Central

    Hatosy, Stephen M.

    2015-01-01

    Recent studies of natural environments have revealed vast genetic reservoirs of antibiotic resistance (AR) genes. Soil bacteria and human pathogens share AR genes, and AR genes have been discovered in a variety of habitats. However, there is little knowledge about the presence and diversity of AR genes in marine environments and which organisms host AR genes. To address this, we identified the diversity of genes conferring resistance to ampicillin, tetracycline, nitrofurantoin, and sulfadimethoxine in diverse marine environments using functional metagenomics (the cloning and screening of random DNA fragments). Marine environments were host to a diversity of AR-conferring genes. Antibiotic-resistant clones were found at all sites, with 28% of the genes identified as known AR genes (encoding beta-lactamases, bicyclomycin resistance pumps, etc.). However, the majority of AR genes were not previously classified as such but had products similar to proteins such as transport pumps, oxidoreductases, and hydrolases. Furthermore, 44% of the genes conferring antibiotic resistance were found in abundant marine taxa (e.g., Pelagibacter, Prochlorococcus, and Vibrio). Therefore, we uncovered a previously unknown diversity of genes that conferred an AR phenotype among marine environments, which makes the ocean a global reservoir of both clinically relevant and potentially novel AR genes. PMID:26296734

  3. Survival relative to new and ancestral host plants, phytoplasma infection, and genetic constitution in host races of a polyphagous insect disease vector

    PubMed Central

    Maixner, Michael; Albert, Andreas; Johannesen, Jes

    2014-01-01

    Dissemination of vectorborne diseases depends strongly on the vector's host range and the pathogen's reservoir range. Because vectors interact with pathogens, the direction and strength of a vector's host shift is vital for understanding epidemiology and is embedded in the framework of ecological specialization. This study investigates survival in host-race evolution of a polyphagous insect disease vector, Hyalesthes obsoletus, whether survival is related to the direction of the host shift (from field bindweed to stinging nettle), the interaction with plant-specific strains of obligate vectored pathogens/symbionts (stolbur phytoplasma), and whether survival is related to genetic differentiation between the host races. We used a twice repeated, identical nested experimental design to study survival of the vector on alternative hosts and relative to infection status. Survival was tested with Kaplan–Meier analyses, while genetic differentiation between vector populations was quantified with microsatellite allele frequencies. We found significant direct effects of host plant (reduced survival on wrong hosts) and sex (males survive longer than females) in both host races and relative effects of host (nettle animals more affected than bindweed animals) and sex (males more affected than females). Survival of bindweed animals was significantly higher on symptomatic than nonsymptomatic field bindweed, but in the second experiment only. Infection potentially had a positive effect on survival in nettle animals but due to low infection rates the results remain suggestive. Genetic differentiation was not related to survival. Greater negative plant-transfer effect but no negative effect of stolbur in the derived host race suggests preadaptation to the new pathogen/symbiont strain before strong diversifying selection during the specialization process. Physiological maladaptation or failure to accept the ancestral plant will have similar consequences, namely positive assortative

  4. Survival relative to new and ancestral host plants, phytoplasma infection, and genetic constitution in host races of a polyphagous insect disease vector.

    PubMed

    Maixner, Michael; Albert, Andreas; Johannesen, Jes

    2014-08-01

    Dissemination of vectorborne diseases depends strongly on the vector's host range and the pathogen's reservoir range. Because vectors interact with pathogens, the direction and strength of a vector's host shift is vital for understanding epidemiology and is embedded in the framework of ecological specialization. This study investigates survival in host-race evolution of a polyphagous insect disease vector, Hyalesthes obsoletus, whether survival is related to the direction of the host shift (from field bindweed to stinging nettle), the interaction with plant-specific strains of obligate vectored pathogens/symbionts (stolbur phytoplasma), and whether survival is related to genetic differentiation between the host races. We used a twice repeated, identical nested experimental design to study survival of the vector on alternative hosts and relative to infection status. Survival was tested with Kaplan-Meier analyses, while genetic differentiation between vector populations was quantified with microsatellite allele frequencies. We found significant direct effects of host plant (reduced survival on wrong hosts) and sex (males survive longer than females) in both host races and relative effects of host (nettle animals more affected than bindweed animals) and sex (males more affected than females). Survival of bindweed animals was significantly higher on symptomatic than nonsymptomatic field bindweed, but in the second experiment only. Infection potentially had a positive effect on survival in nettle animals but due to low infection rates the results remain suggestive. Genetic differentiation was not related to survival. Greater negative plant-transfer effect but no negative effect of stolbur in the derived host race suggests preadaptation to the new pathogen/symbiont strain before strong diversifying selection during the specialization process. Physiological maladaptation or failure to accept the ancestral plant will have similar consequences, namely positive assortative

  5. Carbon-dioxide plume geothermal (CPG) systems, an alternative engineered geothermal system (EGS) that does not require hydrofracturing: Comparison with traditional EGS regarding geologic reservoir heat energy extraction and potential for inducing seismicity

    NASA Astrophysics Data System (ADS)

    Randolph, J. B.; Saar, M. O.

    2010-12-01

    Traditional enhanced or engineered geothermal systems (EGS) typically require hydrofracturing of rock with low natural permeability, which may induce seismicity, leading to significant socio-political resistance. In contrast, the approach described here does not rely on hydrofracturing or similar permeability-enhancing technologies but, rather, utilizes existing high-permeability and high-porosity geologic reservoirs that are overlain by a low-permeability caprock. Carbon dioxide (CO2) is pumped into such reservoirs, where it forms a CO2 plume that largely displaces native formation fluid and is heated by the natural in-situ heat and background geothermal heat flux. A portion of the heated CO2 is piped to the surface to power generators and/or to provide heat for direct use before being returned to the subsurface. Non-recoverable CO2 in the subsurface is geologically sequestered, serving as a CO2 sink that mitigates anthropogenic greenhouse gas emissions to the atmosphere. Furthermore, the amount of CO2 sequestered in such a CO2-plume geothermal (CPG) system is much larger than in more traditional fracture-dominated CO2-based EGS approaches. Here, we compare the geothermal heat energy extraction potential between CPG and traditional water- or CO2-based EGS approaches. Thereafter, we contrast the risk of induced seismicity associated with hydrofracturing in traditional EGS versus that of technologies that require only the fluid injection and production component of geothermal system operations, such as CPG, but minimal-to-no reservoir stimulation. While additional research is required, numerical simulation results at present suggest CPG systems would be viable geothermal energy sources for electric power production for decades, potentially even in regions with low geothermal temperatures and heat flow rates. In addition, CPG systems are expected to significantly reduce the risk of inducing seismicity compared to traditional EGS.

  6. HIV reservoirs: what, where and how to target them.

    PubMed

    Churchill, Melissa J; Deeks, Steven G; Margolis, David M; Siliciano, Robert F; Swanstrom, Ronald

    2016-01-01

    One of the main challenges in the fight against HIV infection is to develop strategies that are able to eliminate the persistent viral reservoir that harbours integrated, replication-competent provirus within host cellular DNA. This reservoir is resistant to antiretroviral therapy (ART) and to clearance by the immune system of the host; viruses originating from this reservoir lead to rebound viraemia once treatment is stopped, giving rise to new rounds of infection. Several studies have focused on elucidating the cells and tissues that harbour persistent virus, the true size of the reservoir and how best to target it, but these topics are the subject of ongoing debate. In this Viewpoint article, several experts in the field discuss the constitution of the viral reservoir, how best to measure it and the best ways to target this source of persistent infection. PMID:26616417

  7. Reservoir management applications to oil reservoirs

    SciTech Connect

    Martin, F.D.; Ouenes, A.; Weiss, W.W.; Chawathe, A.

    1996-02-01

    Winnipegosis and Red River oil production in the Bainville North Field in Roosevelt County, Montana began in 1979. The Red River is at 12,500 ft and one well is completed in the Nisku formation at 10,200 ft. This well produced 125,000 bbl from the Nisku during its first 41 months. Since operating conditions inhibit dual completions and Nisku wells cost $900,000, the need for a Nisku development plan is apparent. The size of the reservoir and optimum well density are the key unknowns. Recognizing the need for additional Nisku data, a 5000 acre 3-D seismic survey was processed and the results used to map the top of the Nisku. The reservoir thickness, porosity, and water saturation were known from the openhole logs at eight well locations on an average of 320 acres spacing. The thickness of the thin pay limited the seismic information to areal extent of reservoir depth. Static reservoir pressure from drillstem test was available at two wells. Additional reservoir pressure data in the form of transient tests were available at two wells. Under Los Alamos National Laboratory Basic Ordering Agreement 9-XU3-0402J-1, the New Mexico Petroleum Recovery Research Center (PRRC) characterized the Nisku to develop a reservoir management plan. Nance Petroleum provided all available field and laboratory data for characterizing the Nisku formation. Due to sparse well coverage, and the lack of producing wells, the PRRC had to develop a new reservoir description approach to reach an acceptable characterization of the entire reservoir. This new approach relies on the simultaneous use of 3-D seismic and reservoir simulation to estimate key reservoir properties.

  8. Hantavirus immunology of rodent reservoirs: current status and future directions.

    PubMed

    Schountz, Tony; Prescott, Joseph

    2014-01-01

    Hantaviruses are hosted by rodents, insectivores and bats. Several rodent-borne hantaviruses cause two diseases that share many features in humans, hemorrhagic fever with renal syndrome in Eurasia or hantavirus cardiopulmonary syndrome in the Americas. It is thought that the immune response plays a significant contributory role in these diseases. However, in reservoir hosts that have been closely examined, little or no pathology occurs and infection is persistent despite evidence of adaptive immune responses. Because most hantavirus reservoirs are not model organisms, it is difficult to conduct meaningful experiments that might shed light on how the viruses evade sterilizing immune responses and why immunopathology does not occur. Despite these limitations, recent advances in instrumentation and bioinformatics will have a dramatic impact on understanding reservoir host responses to hantaviruses by employing a systems biology approach to identify important pathways that mediate virus/reservoir relationships. PMID:24638205

  9. Hantavirus Immunology of Rodent Reservoirs: Current Status and Future Directions

    PubMed Central

    Schountz, Tony; Prescott, Joseph

    2014-01-01

    Hantaviruses are hosted by rodents, insectivores and bats. Several rodent-borne hantaviruses cause two diseases that share many features in humans, hemorrhagic fever with renal syndrome in Eurasia or hantavirus cardiopulmonary syndrome in the Americas. It is thought that the immune response plays a significant contributory role in these diseases. However, in reservoir hosts that have been closely examined, little or no pathology occurs and infection is persistent despite evidence of adaptive immune responses. Because most hantavirus reservoirs are not model organisms, it is difficult to conduct meaningful experiments that might shed light on how the viruses evade sterilizing immune responses and why immunopathology does not occur. Despite these limitations, recent advances in instrumentation and bioinformatics will have a dramatic impact on understanding reservoir host responses to hantaviruses by employing a systems biology approach to identify important pathways that mediate virus/reservoir relationships. PMID:24638205

  10. The Latent Reservoir for HIV-1: How Immunologic Memory and Clonal Expansion Contribute to HIV-1 Persistence.

    PubMed

    Murray, Alexandra J; Kwon, Kyungyoon J; Farber, Donna L; Siliciano, Robert F

    2016-07-15

    Combination antiretroviral therapy (ART) for HIV-1 infection reduces plasma virus levels to below the limit of detection of clinical assays. However, even with prolonged suppression of viral replication with ART, viremia rebounds rapidly after treatment interruption. Thus, ART is not curative. The principal barrier to cure is a remarkably stable reservoir of latent HIV-1 in resting memory CD4(+) T cells. In this review, we consider explanations for the remarkable stability of the latent reservoir. Stability does not appear to reflect replenishment from new infection events but rather normal physiologic processes that provide for immunologic memory. Of particular importance are proliferative processes that drive clonal expansion of infected cells. Recent evidence suggests that in some infected cells, proliferation is a consequence of proviral integration into host genes associated with cell growth. Efforts to cure HIV-1 infection by targeting the latent reservoir may need to consider the potential of latently infected cells to proliferate. PMID:27382129

  11. Status of Cherokee Reservoir

    SciTech Connect

    Not Available

    1990-08-01

    This is the first in a series of reports prepared by Tennessee Valley Authority (TVA) for those interested in the conditions of TVA reservoirs. This overviews of Cherokee Reservoir summarizes reservoir and watershed characteristics, reservoir uses and use impairments, water quality and aquatic biological conditions, and activities of reservoir management agencies. This information was extracted from the most current reports, publications, and data available, and interviews with water resource professionals in various Federal, state, and local agencies and in public and private water supply and wastewater treatment facilities. 11 refs., 4 figs., 1 tab.

  12. Status of Wheeler Reservoir

    SciTech Connect

    Not Available

    1990-09-01

    This is one in a series of status reports prepared by the Tennessee Valley Authority (TVA) for those interested in the conditions of TVA reservoirs. This overview of Wheeler Reservoir summarizes reservoir purposes and operation, reservoir and watershed characteristics, reservoir uses and use impairments, and water quality and aquatic biological conditions. The information presented here is from the most recent reports, publications, and original data available. If no recent data were available, historical data were summarized. If data were completely lacking, environmental professionals with special knowledge of the resource were interviewed. 12 refs., 2 figs.

  13. Evidence for potential of managing some african fruit fly species (Diptera: Tephritidae) using the mango fruit fly host-marking pheromone

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We investigated conspecific and heterospecific oviposition host discrimination among four economically important fruit fly pests of mango in Africa (Ceratitis capitata, Wiedemann; C. fasciventris, Bezzi; C. rosa, Karsch, and C. cosyra, Walker) with regard to host-marking behavior and fecal matter aq...

  14. A potential link between magmatic volatiles and mantle source lithology in the Hawaiian Plume: a view from olivine-hosted melt inclusions and osmium isotopes

    NASA Astrophysics Data System (ADS)

    Marske, J. P.; Hauri, E. H.; Garcia, M. O.; Pietruszka, A. J.

    2013-12-01

    Variations in radiogenic isotope ratios and magmatic volatile abundances (e.g., CO2 or H2O) in lavas from Hawaiian volcanoes reveal important magmatic processes (e.g., melting of a heterogeneous source and magma degassing). Based on variations in ratios of highly incompatible trace elements (e.g., Nb/La) and radiogenic isotopes (e.g., 206Pb/204Pb), shield-stage Hawaiian lavas likely originate from a plume source containing peridotite and ancient recycled oceanic crust (pyroxenite). The source region may also be heterogeneous with respect to volatile concentrations. However, shallow magma degassing makes it difficult to determine if there is a link between mantle source composition and the volatile budget. We analyzed osmium isotopic ratios and volatile contents in olivines and glasses for 34 samples from Koolau, Mauna Kea, Mauna Loa, Hualalai, Kilauea, and Loihi to determine if volatiles in magmas correlate with geochemical tracers of source lithology. For a given volcano, most 187Os/188Os values of olivines (0.127-0.134) are similar to the whole-rock values, yet some Mauna Loa and Loihi olivines display the lower ratios (0.116-0.118) that may reflect partial melts of ancient recycled mantle lithosphere. SIMS analyses of Hawaiian glasses reveal a range in abundances of CO2 (10-250 ppm), H2O (0.2-1.2 wt.%), S (38-2960 ppm), and Cl (39-2960 ppm). However, most samples have low CO2 contents (<100 ppm) indicating that the lavas are degassed. Olivine-hosted melt inclusions from the same Hawaiian samples display a wider range of volatile abundances (i.e. 10-760 ppm CO2) than matrix glasses that may reflect mixing of undegassed to moderately degassed magmas. The average CO2 and H2O/CO2 contents in the least degassed olivine-hosted melt inclusions (with >200 ppm CO2) display a broad correlation with the osmium isotopic compositions of the olivines. This indicates a potential link between pre-eruptive volatile budgets and mantle sources lithology may exist within the

  15. Characterization of oil and gas reservoir heterogeneity

    SciTech Connect

    Sharma, G.D.

    1992-01-01

    The ultimate objective of this cooperative research project is to characterize Alaskan petroleum reservoirs in terms of their reserves, physical and chemical properties, geologic configuration in relation to lithofacies and structure, and development potential. The project has two tasks: Task 1 is a geological description of the reservoirs including petrophysical properties, i.e., porosity, permeability, permeability variation, formation depth, temperature, and net pay, facies changes and reservoir structures as drawn from cores, well logs, and other geological data. Task 2 is reservoir fluid characterization-determination of physical properties of reservoir fluids including density, viscosity, phase distributions and composition as well as petrogenesis-source rock identification; and the study of asphaltene precipitation for Alaskan crude oils. Results are discussed.

  16. Characterization of oil and gas reservoir heterogeneity

    SciTech Connect

    Sharma, G.D.

    1992-01-01

    The ultimate objective of this cooperative research project is to characterize Alaskan petroleum reservoirs in terms of their reserves, physical and chemical properties, geologic configuration in relation to lithofacies and structure, and development potential. The project has two tasks: Task 1 is a geological description of the reservoirs including petrophysical properties, i.e., porosity, permeability, permeability variation, formation depth, temperature, and net pay, facies changes and reservoir structures as drawn from cores, well logs, and other geological data. Task 2 is reservoir fluid characterization -- determination of physical properties of reservoir fluids including density, viscosity, phase distributions and composition as well as petrogenesis -- source rock identification; and the study of asphaltene precipitation for Alaskan crude oils.

  17. Characterization of oil and gas reservoir heterogeneity

    SciTech Connect

    Sharma, G.D.

    1992-01-01

    The ultimate oojective of this cooperative research project is to characterize Alaskan petroleum reservoirs in terms of their reserves, physical and chemical properties, geologic configuration in relation to lithofacies and structure, and development potential. The project has two tasks: Task 1 is a geological description of the reservoirs including petrophysical properties, i.e., porosity, permeability, permeability variation, formation depth, temperature, and net pay, facies changes and reservoir structures as drawn from cores, well logs, and other geological data. Task 2 is reservoir fluid characterization--determination of physical properties of reservoir fluids including density, viscosity, phase distributions and composition as well as petrogenesis--source rock identification; and the study of asphaltene precipitation for Alaskan crude oils. This report presents a summary of technical progress of the well log analysis of Kuparuk Field, Northslope, Alaska.

  18. Dolomite reservoirs: Porosity evolution and reservoir characteristics

    SciTech Connect

    Sun, S.Q.

    1995-02-01

    Systematic analyses of the published record of dolomite reservoirs worldwide reveal that the majority of hydrocarbon-producing dolomite reservoirs occurs in (1) peritidal-dominated carbonate, (2) subtidal carbonate associated with evaporitic tidal flat/lagoon, (3) subtidal carbonate associated with basinal evaporite, and (4) nonevaporitic carbonate sequence associated with topographic high/unconformity, platform-margin buildup or fault/fracture. Reservoir characteristics vary greatly from one dolomite type to another depending upon the original sediment fabric, the mechanism by which dolomite was formed, and the extent to which early formed dolomite was modified by post-dolomitization diagenetic processes (e.g., karstification, fracturing, and burial corrosion). This paper discusses the origin of dolomite porosity and demonstrates the porosity evolution and reservoir characteristics of different dolomite types.

  19. Host feeding preference of Phlebotomus guggisbergi, a vector of Leishmania tropica in Kenya.

    PubMed

    Johnson, R N; Ngumbi, P M; Mwanyumba, J P; Roberts, C R

    1993-07-01

    Recently the sandfly Phlebotomus guggisbergi was found to be a vector of Leishmania tropica causing cutaneous leishmaniasis in the Laikipia focus, Kenya, but extensive searches have shed no light on the identity of the rural reservoir host(s). In order to discover more about the biology of the vector, a host feeding preference study was conducted on wild sandflies in their natural cave environment over a 6-month period. Solid state Army miniature (SSAM) traps, without light bulb, were suspended over cages with potential hosts or an empty cage control. The animals tested included sheep, goat, dog, cat, hamster, rabbit, giant rat (Cricetomys gambianus), crested rat (Lophiomys imhausi) and rock hyrax (Procavia capensis), all of which (except hamsters) are normally found in the vicinity of the study site. Sandfly collections from traps baited with goat, sheep, cat, dog, rabbit, or wild rodent species were significantly higher than the control, whereas trap collections with hamster and rock hyrax were not significantly different from the control. Numbers of sandflies collected from the goat, sheep and cat were significantly greater than from the rabbit and rodents. The sex ratio also varied between collections: larger animals attracted a higher proportion of female P. guggisbergi than did the smaller animals (P > 0.05). Therefore greater emphasis should be placed on surveying larger animals to assess their status as reservoir hosts for L. tropica in Kenya. PMID:8369555

  20. New hosts for the mite Ornithonyssus bursa in Argentina.

    PubMed

    Santillán, M Á; Grande, J M; Liébana, M S; Martínez, P; Díaz, L A; Bragagnolo, L A; Solaro, C; Galmes, M A; Sarasola, J H

    2015-12-01

    The mite Ornithonyssus bursa (Berlese) (Mesostigmata: Macronyssidae) is considered a poultry pest causing important infestations in chickens and it is considered a potential vector of arbovirus. Despite being considered a common parasite in wild birds, there is scarce published information about its potential hosts and effects on them. Here we present new bird hosts for O. bursa, assess the presence of Alphavirus, Flavivirus and Bunyavirus in mites from three host species, and discuss its potential impact on wild bird populations. We found O. bursa infecting five raptor and six passerine wild bird species. For nine of these species, this is the first record of infection by O. bursa. Although all analysed mites were negative for the examined arboviruses, the small sample size of mites does not allow further conclusions at the present moment. Because of the general nature of this ectoparasite, its presence in migratory long dispersal and endangered bird species, and the seropositivity for arboviruses in some of the species studied here, we consider it critical to assess the role of O. bursa and other ectoparasites as vectors and reservoirs of pathogens and as potential deleterious agents in wild bird populations. PMID:26258483

  1. Wireline well logging an underutilized technique in reservoir evaluation

    SciTech Connect

    Mathews, M.

    1981-01-01

    Wireline well logs have three general uses in geothermal exploration and reservoir evaluation: reservoir parameter analysis, lithologic column determination, and reservoir size resolution. Reservoir flow testing data are acquired to understand the flow rate, life, and production potential of the geothermal reservoir. These data are a coarse subsurface measurement of the geothermal prospect. Wireline logs acquired from wells in a geothermal prospect are used to define in detail, or estimate the reservoir parameters of temperature, thickness, lateral size, amount of fracture and intergranular pore space, and the quantity and quality of fluid that might be produced. Laboratory measurements can be made on core samples and drill cuttings samples to define the intrinsic behavior of the materials and fluid that compose the geotheraml reservoir. Wireline log measurements are needed to correlate and link the reservoir testing and core analysis, reduce the amount of time needed for flow testing, and predict the production life (amount of heat and fluid available) in a geothermal field.

  2. Exploring the potential reservoirs of non specific TEM beta lactamase (blaTEM) gene in the Indo-Gangetic region: A risk assessment approach to predict health hazards.

    PubMed

    Singh, Gulshan; Vajpayee, Poornima; Rani, Neetika; Amoah, Isaac Dennis; Stenström, Thor Axel; Shanker, Rishi

    2016-08-15

    The emergence of antimicrobial resistant bacteria is an important public health and environmental contamination issue. Antimicrobials of β-lactam group accounts for approximately two thirds, by weight, of all antimicrobials administered to humans due to high clinical efficacy and low toxicity. This study explores β-lactam resistance determinant gene (blaTEM) as emerging contaminant in Indo-Gangetic region using qPCR in molecular beacon format. Quantitative Microbial Risk Assessment (QMRA) approach was adopted to predict risk to human health associated with consumption/exposure of surface water, potable water and street foods contaminated with bacteria having blaTEM gene. It was observed that surface water and sediments of the river Ganga and Gomti showed high numbers of blaTEM gene copies and varied significantly (p<0.05) among the sampling locations. The potable water collected from drinking water facility and clinical settings exhibit significant number of blaTEM gene copies (13±0.44-10200±316 gene copies/100mL). It was observed that E.crassipes among aquatic flora encountered in both the rivers had high load of blaTEM gene copies. The information on prevalence of environmental reservoirs of blaTEM gene containing bacteria in Indo-Gangetic region and risk associated will be useful for formulating strategies to protect public from menace of clinical risks linked with antimicrobial resistant bacteria. PMID:27111425

  3. Water resources review: Wheeler Reservoir, 1990

    SciTech Connect

    Wallus, R.; Cox, J.P.

    1990-09-01

    Protection and enhancement of water quality is essential for attaining the full complement of beneficial uses of TVA reservoirs. The responsibility for improving and protecting TVA reservoir water quality is shared by various federal, state, and local agencies, as well as the thousands of corporations and property owners whose individual decisions affect water quality. TVA's role in this shared responsibility includes collecting and evaluating water resources data, disseminating water resources information, and acting as a catalyst to bring together agencies and individuals that have a responsibility or vested interest in correcting problems that have been identified. This report is one in a series of status reports that will be prepared for each of TVA's reservoirs. The purpose of this status report is to provide an up-to-date overview of the characteristics and conditions of Wheeler Reservoir, including: reservoir purposes and operation; physical characteristics of the reservoir and the watershed; water quality conditions: aquatic biological conditions: designated, actual, and potential uses of the reservoir and impairments of those uses; ongoing or planned reservoir management activities. Information and data presented here are form the most recent reports, publications, and original data available. 21 refs., 8 figs., 29 tabs.

  4. Host Specificity of Bacterial Pathogens

    PubMed Central

    Bäumler, Andreas; Fang, Ferric C.

    2013-01-01

    Most pathogens are able to infect multiple hosts but some are highly adapted to a single-host species. A detailed understanding of the basis of host specificity can provide important insights into molecular pathogenesis, the evolution of pathogenic microbes, and the potential for pathogens to cross the species barrier to infect new hosts. Comparative genomics and the development of humanized mouse models have provided important new tools with which to explore the basis of generalism and specialism. This review will examine host specificity of bacterial pathogens with a focus on generalist and specialist serovars of Salmonella enterica. PMID:24296346

  5. Biology, host specificity tests, and risk assessment of the sawfly Heteroperreyia hubrichi, a potential biological control agent of Schinus terebinthifolius in Hawaii

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Abstract. Heteroperreyia hubrichi Malaise (Hymenoptera: Pergidae), a foliage feeding sawfly of Schinus terebinthifolius Raddi (Sapindales: Anacardiaceae), was studied to assess its suitability as a classical biological control agent of this invasive weed in Hawaii. Nochoice host-specificity tests we...

  6. Serum microRNA181a: Correlates with the intracellular cytokine levels and a potential biomarker for acute graft-versus-host disease.

    PubMed

    Xie, Linna; Zhou, Fang; Liu, Ximin; Fang, Yuan; Yu, Zhe; Song, Ningxia; Kong, Fansheng

    2016-09-01

    The aim of this study was to investigate the clinical relevance of lymphocyte-related serum miRNAs to the pathogenesis of acute graft-versus-host disease (aGVHD) and evaluate the predictive and prognosis value of miRNAs. Consecutive patients who received allogeneic peripheral blood stem cell transplantation (allo-PBSCT) in General Hospital of Jinan Military District were enrolled. aGVHD patients were diagnosed and graded clinically, and divided into the training set and the testing set. Blood samples were collected, total RNA was isolated, and RT-PCR was performed for miRNA expression (miR-181a-3p, miR-214-3p and miR-326). Intracellular cytokines levels were assayed by flow cytometry, and the disease specificity assay of miRNAs for aGVHD was detected. A total of 120 patients were admitted. Serum level of miR-181a in aGVHD patients was highly increased and associated with the severity of aGVHD, but not miR-214 and miR-326. Levels of cytokines including IL-2, IL-22, and IL-17a were positively correlated with miR-181a level, while serum IL-13 level was negatively correlated with miR-181a level in aGVHD patients. Moreover, increased miR-181a level was not detected in patients with acute rejection after kidney transplantation or sepsis patients. MiR-181a level was sensitively and specifically increased, especially in severe aGVHD patients. MiR-181a may be a potential biomarker for the identification, diagnosis, and prognosis of aGVHD patients. PMID:27288630

  7. Identification of an ancient mantle reservoir and young recycled materials in the source region of a young mantle plume: Implications for potential linkages between plume and plate tectonics

    NASA Astrophysics Data System (ADS)

    Wang, Xuan-Ce; Li, Zheng-Xiang; Li, Xian-Hua; Li, Jie; Xu, Yi-Gang; Li, Xiang-Hui

    2013-09-01

    Whether or not mantle plumes and plate subduction are genetically linked is a fundamental geoscience question that impinges on our understanding of how the Earth works. Late Cenozoic basalts in Southeast Asia are globally unique in relation to this question because they occur above a seismically detected thermal plume adjacent to deep subducted slabs. In this study, we present new Pb, Sr, Nd, and Os isotope data for the Hainan flood basalts. Together with a compilation of published results, our work shows that less contaminated basaltic samples from the synchronous basaltic eruptions in Hainan-Leizhou peninsula, the Indochina peninsula and the South China Sea seamounts share the same isotopic and geochemical characteristics. They have FOZO-like Sr, Nd, and Pb isotopic compositions (the dominant lower mantle component). These basalts have primitive Pb isotopic compositions that lie on, or very close to, 4.5- to 4.4-Ga geochrons on 207Pb/204Pb versus 206Pb/204Pb diagram, suggesting a mantle source developed early in Earth's history (4.5-4.4 Ga). Furthermore, our detailed geochemical and Sr, Nd, Pb and Os isotopic analyses suggest the presence of 0.5-0.2 Ga recycled components in the late Cenozoic Hainan plume basalts. This implies a mantle circulation rate of >1 cm/yr, which is similar to that of previous estimates for the Hawaiian mantle plume. The identification of the ancient mantle reservoir and young recycled materials in the source region of these synchronous basalts is consistent with the seismically detected lower mantle-rooted Hainan plume that is adjacent to deep subducted slab-like seismic structures just above the core-mantle boundary. We speculate that the continued deep subduction and the presence of a dense segregated basaltic layer may have triggered the plume to rise from the thermal-chemical pile. This work therefore suggests a dynamic linkage between deep subduction and mantle plume generation.

  8. The Potential Impact of Increased Phosphorus Loads in Lakes Acting as Heavy Metal Reservoirs: A case study from west-central Indiana

    NASA Astrophysics Data System (ADS)

    McLennan, D. A.; Latimer, J. C.; Smith, E.; Stone, J.

    2015-12-01

    Green Valley Lake is a designated state fishing area in west-central Indiana. Prior to this designation, the lake was a water supply reservoir for the adjacent and now abandoned Green Valley Coal Mine (Operating from 1948-1963). The Green Valley Coal Mine property continues to produce excess acidity despite reclamation efforts. The former mine property and the lake are connected by a channel that discharges acidic drainage directly into Green Valley Lake. To evaluate temporal variability in metal and phosphorus (P) geochemistry, two short cores were collected in spring 2014 (38cm) and spring 2015 (39cm). Metal concentrations were determined by a hand-held X-ray fluorescence analyzer after the samples had been dried and crushed. Approximately 20% of these metal concentrations will be verified by ICP-OES following extraction in 50% aqua regia. Detailed P geochemistry was determined using a sequential extraction technique (SEDEX). The sediments in Green Valley Lake are characterized by heavy metal concentrations that are elevated above typical background levels. These metals tend to be concentrated near the sediment water interface, often 3-5 times greater than the average concentration for the rest of the core, which suggests that they are diagenetically mobile and possibly diffusing out of the sediments under dysoxic to anoxic conditions and returning to the sediments under oxic conditions. Total sedimentary P averages 57 umol/g, but oscillates between 20 - 110 umol/g. The most dramatic shift in the detailed P geochemistry is the significant reduction of mineral P at 15 cm and the increasing importance of oxide-associated and adsorbed P upcore. Diatom assemblages suggest that the lake has become increasingly more eutrophic over time. As nutrient loads continue to increase, the oxygen depleted zone may expand impacting fish populations and changing water geochemistry significantly, in particular, mobilizing heavy metals.

  9. Triploid grass carp susceptibility and potential for disease transfer when used to control aquatic vegetation in reservoirs with avian vacuolar myelinopathy.

    PubMed

    Haynie, Rebecca S; Bowerman, William W; Williams, Sarah K; Morrison, John R; Grizzle, John M; Fischer, John M; Wilde, Susan B

    2013-12-01

    Avian vacuolar myelinopathy (AVM) is an often-lethal neurologic disease that affects waterbirds and their avian predators (i.e., bald eagles Haliaeetus leucocephalus) in the southern United States. Feeding trials and field surveys provided evidence that AVM is caused by a toxin-producing, undescribed cyanobacterium (UCB), which grows as an epiphyte on the leaves of submerged aquatic vegetation (SAV). Reservoirs with documented AVM epornitics support dense growth of nonnative SAV. Waterbirds ingest the toxin when feeding on aquatic plants with the epiphytic UCB, and secondary intoxication occurs when raptors consume these birds. Vegetation management has been proposed as a means to reduce waterbird exposure to the putative toxin. We fed aquatic vegetation with and without the UCB to triploid Grass Carp Ctenopharyngodon idella in laboratory and field trials. Only Grass Carp that ingested aquatic vegetation with the UCB developed lesions in the central nervous system. The lesions (viewed using light microscopy) appeared similar to those in birds diagnosed with AVM. Grass Carp that received aquatic vegetation without the UCB were unaffected. Grass Carp tissues from each treatment were fed to domestic chickens Gallus domesticus (an appropriate laboratory model for AVM) in a laboratory trial; the chickens displayed no neurologic signs, and histology revealed a lack of the diagnostic lesions in brain tissues. Results from our trials suggest that (1) triploid Grass Carp are susceptible to the AVM toxin, although no fish mortalities were documented; and (2) the toxin was not accumulated in Grass Carp tissues, and the risk to piscivorous avifauna is likely low. However, a longer exposure time and analysis of sublethal effects may be prudent to further evaluate the efficacy and risk of using triploid Grass Carp to manage aquatic vegetation in a system with frequent AVM outbreaks. PMID:24341766

  10. Quantification of geologic descriptions for reservoir characterization in carbonate reservoirs

    SciTech Connect

    Lucia, F.J.; Vander Stoep, G.W. )

    1990-05-01

    Recognition that a large volume of oil remains in carbonate reservoirs at the end of primary depletion and waterflooding has prompted the reevaluation of the reserve-growth potential of many existing carbonate reservoirs. Types of numerical data required include porosity, absolute permeability, relative permeability, fluid saturation, and capillary pressure, all of which are related to the size and distribution of pore space. Rock fabrics control the size and distribution of pore space and define facies that best characterize carbonate reservoirs. Thus, the link between facies descriptions and numerical engineering data is the relationship between pore-size distribution and present carbonate rock fabric. The most effective way to convert facies descriptions into engineering parameters is by considering three basic rock-fabric categories. The first category is interparticle pore space (both intergranular and intercrystalline pore types) with pore-size distribution controlled primarily by the size and shape of grains or crystals. Grain or crystal size is the key geologic measurement and, along with porosity, provides the basis for converting geologic descriptions into values for permeability, saturation, and capillarity. The second category is separate-vug pore space, such as moldic or intraparticle pore space. Separate-vug pore space adds porosity but little permeability to the reservoir rock. The contribution to saturation and capillarity depends upon the size of the separate-vug pore space. For example, moldic separate vugs will be saturated with oil, whereas microporous grains will be saturated with water. The third category is touching-vug pore space, which is vuggy pore space that is interconnected on a reservoir scale. The engineering parameters for this category are related to three diagenetic and tectonic factors.

  11. Wildlife reservoirs for vector-borne canine, feline and zoonotic infections in Austria

    PubMed Central

    Duscher, Georg G.; Leschnik, Michael; Fuehrer, Hans-Peter; Joachim, Anja

    2014-01-01

    Austria's mammalian wildlife comprises a large variety of species, acting and interacting in different ways as reservoir and intermediate and definitive hosts for different pathogens that can be transmitted to pets and/or humans. Foxes and other wild canids are responsible for maintaining zoonotic agents, e.g. Echinococcus multilocularis, as well as pet-relevant pathogens, e.g. Hepatozoon canis. Together with the canids, and less commonly felids, rodents play a major role as intermediate and paratenic hosts. They carry viruses such as tick-borne encephalitis virus (TBEV), bacteria including Borrelia spp., protozoa such as Toxoplasma gondii, and helminths such as Toxocara canis. The role of wild ungulates, especially ruminants, as reservoirs for zoonotic disease on the other hand seems to be negligible, although the deer filaroid Onchocerca jakutensis has been described to infect humans. Deer may also harbour certain Anaplasma phagocytophilum strains with so far unclear potential to infect humans. The major role of deer as reservoirs is for ticks, mainly adults, thus maintaining the life cycle of these vectors and their distribution. Wild boar seem to be an exception among the ungulates as, in their interaction with the fox, they can introduce food-borne zoonotic agents such as Trichinella britovi and Alaria alata into the human food chain. PMID:25830102

  12. Wildlife reservoirs for vector-borne canine, feline and zoonotic infections in Austria.

    PubMed

    Duscher, Georg G; Leschnik, Michael; Fuehrer, Hans-Peter; Joachim, Anja

    2015-04-01

    Austria's mammalian wildlife comprises a large variety of species, acting and interacting in different ways as reservoir and intermediate and definitive hosts for different pathogens that can be transmitted to pets and/or humans. Foxes and other wild canids are responsible for maintaining zoonotic agents, e.g. Echinococcus multilocularis, as well as pet-relevant pathogens, e.g. Hepatozoon canis. Together with the canids, and less commonly felids, rodents play a major role as intermediate and paratenic hosts. They carry viruses such as tick-borne encephalitis virus (TBEV), bacteria including Borrelia spp., protozoa such as Toxoplasma gondii, and helminths such as Toxocara canis. The role of wild ungulates, especially ruminants, as reservoirs for zoonotic disease on the other hand seems to be negligible, although the deer filaroid Onchocerca jakutensis has been described to infect humans. Deer may also harbour certain Anaplasma phagocytophilum strains with so far unclear potential to infect humans. The major role of deer as reservoirs is for ticks, mainly adults, thus maintaining the life cycle of these vectors and their distribution. Wild boar seem to be an exception among the ungulates as, in their interaction with the fox, they can introduce food-borne zoonotic agents such as Trichinella britovi and Alaria alata into the human food chain. PMID:25830102

  13. Assessing the potential of Medium-Resolution Imaging Spectrometer (MERIS) and Moderate-Resolution Imaging Spectroradiometer (MODIS) data for monitoring total suspended matter in small and intermediate sized lakes and reservoirs

    NASA Astrophysics Data System (ADS)

    Tarrant, P. E.; Amacher, J. A.; Neuer, S.

    2010-09-01

    Satellite remote sensing has been used extensively for many years to monitor the open oceans and coastal waters. These methods have been extended more recently to the study of inland waters. In this study we consider the potential application of data from two ocean color sensors, Moderate-Resolution Imaging Spectroradiometer (MODIS) and Medium-Resolution Imaging Spectrometer (MERIS), for monitoring the levels of suspended solids in small and intermediate sized lakes and reservoirs. We measured total suspended matter (TSM) in four southwestern United States lakes, Roosevelt Lake, Saguaro Lake, Bartlett Lake, and Lake Pleasant, and compared these field data with images obtained from these medium resolution satellite sensors. Our regression analysis of the complete data set identified a linear relationship between the field TSM values and both MODIS 250 m data (r2 = 0.461) and MERIS 290 m data (r2 = 0.521). This relationship improved substantially when data from the smallest lake in the study (Saguaro Lake) were excluded from the analysis (r2 = 0.819 and r2 = 0.888, respectively). The resultant linear models produced estimates with a root-mean-square error (RMSE) ranging from 3.14 mg/L (MODIS) and 2.04 mg/L (MERIS) for all four lakes combined, improving to 1.32 mg/L (MODIS) and 0.47 mg/L (MERIS) for a lake-specific regression. These results suggest that these satellite sensors have the potential to effectively monitor TSM in lakes and reservoirs, although a minimum practical lake size does appear to exist.

  14. Predicting host tropism of influenza A virus proteins using random forest

    PubMed Central

    2014-01-01

    Background Majority of influenza A viruses reside and circulate among animal populations, seldom infecting humans due to host range restriction. Yet when some avian strains do acquire the ability to overcome species barrier, they might become adapted to humans, replicating efficiently and causing diseases, leading to potential pandemic. With the huge influenza A virus reservoir in wild birds, it is a cause for concern when a new influenza strain emerges with the ability to cross host species barrier, as shown in light of the recent H7N9 outbreak in China. Several influenza proteins have been shown to be major determinants in host tropism. Further understanding and determining host tropism would be important in identifying zoonotic influenza virus strains capable of crossing species barrier and infecting humans. Results In this study, computational models for 11 influenza proteins have been constructed using the machine learning algorithm random forest for prediction of host tropism. The prediction models were trained on influenza protein sequences isolated from both avian and human samples, which were transformed into amino acid physicochemical properties feature vectors. The results were highly accurate prediction models (ACC>96.57; AUC>0.980; MCC>0.916) capable of determining host tropism of individual influenza proteins. In addition, features from all 11 proteins were used to construct a combined model to predict host tropism of influenza virus strains. This would help assess a novel influenza strain's host range capability. Conclusions From the prediction models constructed, all achieved high prediction performance, indicating clear distinctions in both avian and human proteins. When used together as a host tropism prediction system, zoonotic strains could potentially be identified based on different protein prediction results. Understanding and predicting host tropism of influenza proteins lay an important foundation for future work in constructing computation

  15. Phylogenetic analysis of a newfound bat-borne hantavirus supports a laurasiatherian host association for ancestral mammalian hantaviruses.

    PubMed

    Witkowski, Peter T; Drexler, Jan F; Kallies, René; Ličková, Martina; Bokorová, Silvia; Mananga, Gael D; Szemes, Tomáš; Leroy, Eric M; Krüger, Detlev H; Drosten, Christian; Klempa, Boris

    2016-07-01

    Until recently, hantaviruses (family Bunyaviridae) were believed to originate from rodent reservoirs. However, genetically distinct hantaviruses were lately found in shrews and moles, as well as in bats from Africa and Asia. Bats (order Chiroptera) are considered important reservoir hosts for emerging human pathogens. Here, we report on the identification of a novel hantavirus, provisionally named Makokou virus (MAKV), in Noack's Roundleaf Bat (Hipposideros ruber) in Gabon, Central Africa. Phylogenetic analysis of the genomic l-segment showed that MAKV was the most closely related to other bat-borne hantaviruses and shared a most recent common ancestor with the Asian hantaviruses Xuan Son and Laibin. Breakdown of the virus load in a bat animal showed that MAKV resembles rodent-borne hantaviruses in its organ distribution in that it predominantly occurred in the spleen and kidney; this provides a first insight into the infection pattern of bat-borne hantaviruses. Ancestral state reconstruction based on a tree of l gene sequences of all relevant hantavirus lineages was combined with phylogenetic fossil host hypothesis testing, leading to a statistically significant rejection of the mammalian superorder Euarchontoglires (including rodents) but not the superorder Laurasiatheria (including shrews, moles, and bats) as potential hosts of ancestral hantaviruses at most basal tree nodes. Our data supports the emerging concept of bats as previously overlooked hantavirus reservoir hosts. PMID:27051047