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Sample records for pyrroles

  1. The Oxidation of Pyrrole.

    PubMed

    Howard, James K; Rihak, Kieran J; Bissember, Alex C; Smith, Jason A

    2016-01-01

    The dearomatization of heterocycles has been a powerful means for producing functional molecules in synthesis. In the case of pyrroles, reductive methods (such as the Birch reduction) have been most widely exploited, while oxidative methods are generally dismissed as too difficult or unpredictable to be useful. However, since the early twentieth century considerable research has been carried out on the controlled oxidation of pyrroles to give highly functionalized products, using a variety of oxidants. This review presents a summary of all work up until the present day in the area of pyrrole oxidation, looking at the use of peroxide, singlet oxygen, hypervalent iodine reagents, a range or organic and inorganic oxidants, and electrochemical approaches. It also offers some perspective on the potential future role of pyrrole oxidation in synthesis. PMID:26294175

  2. Electrochemical polymerization of pyrrole derivatives

    SciTech Connect

    Inagaki, T.; Hunter, M.; Yang, X.Q.; Skotheim, T.A.; Lee, H.S.; Okamoto, Y.

    1988-01-01

    Electrochemical copolymerization of pyrrole and 3-(6-ferrocenyl-6-hydroxyhexyl)pyrrole (P-Fc) yields a ferrocene functionalized polypyrrole with a controlled amount of ferrocene functionalization. Similarly, copolymers of pyrrole and 3-(4-(2,5- dimethoxyphenyl)butyl)pyrrole (P-MP) can be made by electrochemical polymerization and converted to the copolymers containing pH dependent electroactive hydroquinone moieties. 16 refs., 6 figs.

  3. A sustainable catalytic pyrrole synthesis

    NASA Astrophysics Data System (ADS)

    Michlik, Stefan; Kempe, Rhett

    2013-02-01

    The pyrrole heterocycle is a prominent chemical motif and is found widely in natural products, drugs, catalysts and advanced materials. Here we introduce a sustainable iridium-catalysed pyrrole synthesis in which secondary alcohols and amino alcohols are deoxygenated and linked selectively via the formation of C-N and C-C bonds. Two equivalents of hydrogen gas are eliminated in the course of the reaction, and alcohols based entirely on renewable resources can be used as starting materials. The catalytic synthesis protocol tolerates a large variety of functional groups, which includes olefins, chlorides, bromides, organometallic moieties, amines and hydroxyl groups. We have developed a catalyst that operates efficiently under mild conditions.

  4. Cyclo[n]pyrroles and methods thereto

    DOEpatents

    Sessler, Jonathan L.; Seidel, Daniel; Bolze, Frederic R.; Koehler, Thomas

    2006-01-10

    The present invention provides an oxidative coupling procedure that allows efficient synthesis of novel cyclo[n]pyrrole macrocycles. Therefore, the present invention provides cyclo[n]pyrroles where n is 6, 7, 8, 9, 10, 11, or 12, and derivatives, multimers, isomers, and ion and neutral molecule complexes thereof as new compositions of matter. A protonated form of cyclo[n]pyrrole displays a gap of up to 700 nm between strong Soret and Q-like absorption bands in the electronic spectrum, demonstrating no significant ground state absorption in the visible portion of the electronic spectrum. Uses of cyclo[n]pyrroles as separation media, nonlinear optical materials, information storage media and infrared filters are provided.

  5. Near ultraviolet photolysis of deuterated pyrrole.

    PubMed

    Cronin, Bríd; Devine, Adam L; Nix, Michael G D; Ashfold, Michael N R

    2006-08-01

    High resolution time-of-flight (TOF) measurements of the D atom fragments arising in the near ultraviolet (UV) photodissociation of deuterated pyrrole are reported. Structures evident in the measured TOF spectra are all interpretable in terms of N-D bond fission, and population of selected vibrational states of the pyrrolyl-d(4) co-fragment -- thereby clarifying previous uncertainties regarding the branching into different vibronic states of the pyrrolyl radical following UV excitation of pyrrole. PMID:16855723

  6. Resonantly enhanced multiphoton ionization of pyrrole, N-methyl pyrrole, and furan

    SciTech Connect

    Cooper, C.D.; Williamson, A.D.; Miller, J.C.; Compton, R.N.

    1980-08-15

    The resonantly enhanced multiphoton ionization (REMPI) spectra of pyrrole (C/sub 4/H/sub 5/N), N-methyl pyrrole (C/sub 5/H/sub 7/N), and furan (C/sub 4/H/sub 4/O) have been measured in the wavelength region from 365 to 680 nm. New and previously observed Rydberg states are reported for pyrrole and furan. Vibrational constants are presented for most of the Rydberg series. Accurate ionization potentials are derived for pyrrole (8.207 +- 0.003 eV) and N-methyl pyrrole (7.94 +- 0.02 eV). A strong two photon allowed transition is observed in N-methyl pyrrole at 41 193 cm/sup -1/ (0,0) and is attributed to an /sup 1/A/sub 2/ state. The corresponding state is not seen in pyrrole; however, it may be obscured by overlapping Rydberg series. Mass spectra following REMPI for benzene, pyrrole, and furan are reported. The degree of ionic fragmentation depends upon laser power density and wavelength.

  7. Experimental and DFT study on pyrrole tosylhydrazones

    NASA Astrophysics Data System (ADS)

    Singh, R. N.; Rawat, Poonam; Verma, Divya; Bharti, Shailendra Kumar

    2015-02-01

    Two pyrrole tosylhydrazones, 1H-pyrrole-2-tosylhydrazone (PT) and ethyl 3,5-dimethyl-4-(1-(2-tosylhydrazono)ethyl)-1H-pyrrole-2-carboxylate (EDTEPC) have been synthesized and characterized by various spectroscopic techniques. All calculations have been performed using B3LYP functional and 6-31G(d,p) basis set. The result of hydrogen bonding is obvious in 1H NMR and FT-IR due to down field chemical shift and vibrational red shift to pyrrole Nsbnd H proton, respectively. The red shift in both the proton donor (pyrrole Nsbnd H) and proton acceptor (Sdbnd O) group designates presence of intermolecular classical hydrogen bonding Nsbnd H⋯O. The binding energy of dimer formation is calculated as 13.12, 14.12 kcal/mol, after correction in basis set superposition error (BSSE). Topological parameters indicate the weaker interactions presents in the molecules. The global electrophilicity index (ω = 2.54, 2.28 eV) shows that PT and EDTEPC molecules are strong electrophile. The local reactivity descriptors analyses are performed to determine the reactive sites within the PT and EDTEPC. Computed first hyperpolarizability (β0 = 6.50/8.38 × 10-30 esu) of PT and EDTEPC indicates non-linear optical (NLO) response of the molecules.

  8. Flexible supercapacitor based on electrochemically synthesized pyrrole formyl pyrrole copolymer coated on carbon microfibers

    NASA Astrophysics Data System (ADS)

    Gholami, Mehrdad; Moozarm Nia, Pooria; Narimani, Leila; Sokhakian, Mehran; Alias, Yatimah

    2016-08-01

    The main objective of this work is to prepare a flexible supercapacitor using electrochemically synthesized pyrrole formyl pyrrole copolymer P(Py-co-FPy) coated on the carbon microfibers. Due to difficulties of working with carbon microfibers, glassy carbon was used to find out optimized conditions by varying mole ratio of pyrrole and formyl pyrrole monomers on the capacitance value. The prepared electrodes were characterized using Fourier transform infrared spectroscopy (FT-IR), field emission scanning electron microscope (FESEM), Brunauer-Emmett-Teller (BET) analysis, cyclic voltammetry (CV) and electrochemical impedance spectroscopy (EIS). Then the X-ray photoelectron spectroscopy (XPS) was used to characterize the optimized electrode. The specific capacitance is calculated using cyclic voltammetry, charge/discharge method, and impedance spectroscopy. The charge/discharge study reveals that the best specific capacitance is estimated to be 220.3 mF cm-2 for equal mole fraction of pyrrole and formyl pyrrole Py (0.1)-FP (0.1) at discharge current of 3 × 10-4 A. This optimized electrode keeps about 92% of its capacitance value in high current of discharging. The specific capacitances calculated by all the mentioned methods are in agreement with each other. Finally, the found optimized conditions were successfully applied to produce a flexible supercapacitor on the surface of carbon microfibers.

  9. Femtosecond Timescale Evolution of Pyrrole Electronic Excitation

    NASA Astrophysics Data System (ADS)

    Montero, Raul; Conde, Alvaro Peralta; Ovejas, Virginia; Castano, Fernando; Longarte, Asier

    2012-06-01

    Pyrrole is a simple aromatic molecule with relevantchromophoric properties in biology. Although its apparent simplicity, it shows a complicated dynamics after excitation in the near part of the UV absorption spectrum, which results from the interplay between the bright ππ^* and the dark dissociative πσ^* electronic transitions. Herein, we present a time resolved study with ultrafast resolution on the relaxation dynamics of isolated pyrrole, after excitation in the 265-217 nm range. Two lifetimes of 19 and 15 fs, which are associated with the internal conversion from the bright 1B2 ππ^* state and the propagation of the wavepacket on the πσ^* state, respectively, are found in the studied energy interval. The work also explores the consequences of non resonant adiabatic excitation of the system when broadband femtosecond pulses are employed to prepare the molecule in the targeted electronic states, revealing the key implication of this type of coherent phenomena. The collected data reveal that the bright 1B2 ππ^* state is adiabatically populated at excitation wavelengths far away from resonance, providing an efficient way to reach the πσ^* state. The recorded transients are fit employing a coherent model that provides a comprehensive view of the dynamical processes pyrrole undergoes after excitation by ultrashort light pulses. M. N. R. Ashfold, B. Cronin, A. L. Devine, R. N. Dixon and M. G. D. Nix Science, 312, 1637-1640, 2006.

  10. Photoejection of electrons from pyrrole into an aqueous environment: ab initio results on pyrrole-water clusters

    NASA Astrophysics Data System (ADS)

    Sobolewski, Andrzej L.; Domcke, Wolfgang

    2000-05-01

    Ab initio (RHF, CASSCF and CASPT2) calculations in the ground and lowest excited singlet states have been performed on pyrrole and pyrrole-water clusters. Full geometry optimization in the 1πσ ∗ state, which is energetically accessible from the optically allowed 1ππ ∗ state, reveals the flow of the electronic charge from pyrrole towards the water molecules, i.e., the formation of a charge transfer-to-solvent state. The computational results indicate that pyrrole-water clusters are good models for the investigation of the mechanistic details of the electron solvation process occurring upon ultraviolet photoexcitation of organic chromophores in liquid water.

  11. Morphology and electrical properties of electrochemically synthesized pyrrole-formyl pyrrole copolymer

    NASA Astrophysics Data System (ADS)

    Gholami, Mehrdad; Nia, Pooria Moozarm; Alias, Yatimah

    2015-12-01

    A direct electrochemical copolymerization of pyrrole-formyl pyrrole (Py-co-FPy) was carried out by oxidative copolymerization of formyl pyrrole and pyrrole in LiClO4 aqueous solution through galvanostatic method. The (Py-co-FPy) copolymer was characterized using Fourier-transform infrared spectroscopy (FT-IR), field emission scanning electron microscope (FESEM), energy-filtering transmission electron microscope (EFTEM), thermal gravimetric analysis (TGA), X-ray photoelectron spectroscopy (XPS), cyclic voltammetry (CV) and electrochemical impedance spectroscopy (EIS). The FESEM images showed that the synthesized copolymer had a hollow whelk-like helixes structure, which justifies the enhancement of charge transportation through the copolymer film. Cyclic voltammetry studies revealed that the electrocatalytic activity of synthesized copolymer has improved and the surface coverage in copolymer enhanced 1.6 times compared to polypyrrole alone. Besides, (Py-co-FPy) copolymer showed 2.5 times lower electrochemical charge transfer resistance (Rct) value in impedance spectroscopy. Therefore, this copolymer has a strong potential to be used in several applications such as sensor applications.

  12. Living on pyrrolic foundations - Advances in natural and artificial bioactive pyrrole derivatives.

    PubMed

    Domagala, Anna; Jarosz, Tomasz; Lapkowski, Mieczyslaw

    2015-07-15

    Pyrrole, a simple heterocyclic system, is an important building block for numerous biologically active compounds both natural and synthetic in origin, which boast an immense array of qualities, baleful and beneficial alike. The latter have given rise to a bountiful variety of pyrrole-based drugs, with many more being designed, developed and applied each year, as evidenced by the amount of entries in the Cambridge Structural Database skyrocketing from about six hundred in 2004 to more than a thousand over the course of the last decade. Particularly important in light of the ever-encroaching menace of drug-resistant bacteria, the vast progress in the field necessitates a sound organisational framework and summary - a task, to which we contribute this summary and checklist of the most recent developments, indicating the classes of compounds, which have attracted the most significant research attention. PMID:26087028

  13. Hydroquinone-pyrrole dyads with varied linkers.

    PubMed

    Huang, Hao; Karlsson, Christoffer; Strømme, Maria; Sjödin, Martin; Gogoll, Adolf

    2016-01-01

    A series of pyrroles functionalized in the 3-position with p-dimethoxybenzene via various linkers (CH2, CH2CH2, CH=CH, C≡C) has been synthesized. Their electronic properties have been deduced from (1)H NMR, (13)C NMR, and UV-vis spectra to detect possible interactions between the two aromatic subunits. The extent of conjugation between the subunits is largely controlled by the nature of the linker, with the largest conjugation found with the trans-ethene linker and the weakest with the aliphatic linkers. DFT calculations revealed substantial changes in the HOMO-LUMO gap that correlated with the extent of conjugation found experimentally. The results of this work are expected to open up for use of the investigated compounds as components of redox-active materials in sustainable, organic electrical energy storage devices. PMID:26877811

  14. Hydroquinone–pyrrole dyads with varied linkers

    PubMed Central

    Huang, Hao; Karlsson, Christoffer; Strømme, Maria; Sjödin, Martin

    2016-01-01

    Summary A series of pyrroles functionalized in the 3-position with p-dimethoxybenzene via various linkers (CH2, CH2CH2, CH=CH, C≡C) has been synthesized. Their electronic properties have been deduced from 1H NMR, 13C NMR, and UV–vis spectra to detect possible interactions between the two aromatic subunits. The extent of conjugation between the subunits is largely controlled by the nature of the linker, with the largest conjugation found with the trans-ethene linker and the weakest with the aliphatic linkers. DFT calculations revealed substantial changes in the HOMO–LUMO gap that correlated with the extent of conjugation found experimentally. The results of this work are expected to open up for use of the investigated compounds as components of redox-active materials in sustainable, organic electrical energy storage devices. PMID:26877811

  15. Simple two-step synthesis of 2,4-disubstituted pyrroles and 3,5-disubstituted pyrrole-2-carbonitriles from enones

    PubMed Central

    Kucukdisli, Murat; Ferenc, Dorota; Heinz, Marcel; Wiebe, Christine

    2014-01-01

    Summary The cyclocondensation of enones with aminoacetonitrile furnishes 3,4-dihydro-2H-pyrrole-2-carbonitriles which can be readily converted to 2,4-disubstituted pyrroles by microwave-induced dehydrocyanation. Alternatively, oxidation of the intermediates produces 3,5-disubstituted pyrrole-2-carbonitriles. PMID:24605166

  16. Electrogenerated poly(pyrrole-lactosyl) and poly(pyrrole-3'-sialyllactosyl) interfaces: towards the impedimetric detection of lectins

    NASA Astrophysics Data System (ADS)

    Gondran, Chantal; Dubois, Marie-Pierre; Fort, Sebastien; Cosnier, Serge

    2013-07-01

    This paper reports on the impedimetric transduction of binding reaction between polymerized saccharides and target lectins. The controlled potential electro-oxidation of pyrrole-lactosyl and pyrrole-3’-sialyllactosyl at 0.95 V vs Ag/AgCl, provides thin and reproducible poly(pyrrole-saccharide) films. The affinity binding of two lectins: Arachis hypogaea, (PNA) and Maackia amurensis (MAA) onto poly(pyrrole-lactosyl) and poly(pyrrole-3’-sialyllactosyl) electrodes, was demonstrated by cyclic voltammetry in presence of ruthenium hexamine and hydroquinone. In addition, rotating disk experiments were carried out to determine the permeability of both polypyrrole films and its evolution after incubating with lectin target. Finally, the possibility of using the poly(pyrrole-lactosyl) or poly(pyrrole-3’-siallyllactosyl) films for the impedimetric transduction of the lectin binding reaction, was investigated with hydroquinone (2×10-3 mol L-1) as a redox probe in phosphate buffer. The resuting impedance spectra were interpreted and modeled as an equivalent circuit indicating that charge transfer resistance (Rct) and relaxation frequency (f°) parameters are sensitive to the lectin binding. Rct increases from 77 to 97 Ω cm2 for PNA binding and from 93 to 131 Ω cm2 for MAA binding. In parallel, f° decreases from 276 to 222 Hz for PNA binding and from 223 to 131 Hz for MAA binding. This evolution of both parameters reflects the steric hindrances generated by the immobilised lectins towards the permeation of the redox probe.

  17. Electrogenerated poly(pyrrole-lactosyl) and poly(pyrrole-3'-sialyllactosyl) interfaces: toward the impedimetric detection of lectins

    PubMed Central

    Gondran, Chantal; Dubois, Marie-Pierre; Fort, Sébastien; Cosnier, Serge

    2013-01-01

    This paper reports on the impedimetric transduction of binding reaction between polymerized saccharides and target lectins. The controlled potential electro-oxidation of pyrrole-lactosyl and pyrrole-3′-sialyllactosyl at 0.95 V vs. Ag/AgCl, provides thin and reproducible poly(pyrrole-saccharide) films. The affinity binding of two lectins: Arachis hypogaea, (PNA) and Maackia amurensis (MAA) onto poly(pyrrole-lactosyl) and poly(pyrrole-3′-sialyllactosyl) electrodes, was demonstrated by cyclic voltammetry in presence of ruthenium hexamine and hydroquinone. In addition, rotating disk experiments were carried out to determine the permeability of both polypyrrole films and its evolution after incubating with lectin target. Finally, the possibility of using the poly(pyrrole-lactosyl) or poly(pyrrole-3′-siallyllactosyl) films for the impedimetric transduction of the lectin binding reaction, was investigated with hydroquinone (2 × 10−3 mol L−1) as a redox probe in phosphate buffer. The resulting impedance spectra were interpreted and modeled as an equivalent circuit indicating that charge transfer resistance (Rct) and relaxation frequency (f°) parameters are sensitive to the lectin binding. Rct increases from 77 to 97 Ω cm2 for PNA binding and from 93 to 131 Ω cm2 for MAA binding. In parallel, f° decreases from 276 to 222 Hz for PNA binding and from 223 to 131 Hz for MAA binding. This evolution of both parameters reflects the steric hindrances generated by the immobilized lectins towards the permeation of the redox probe. PMID:24790939

  18. Selective Mono-reduction of Pyrrole-2,5 and 2,4-Dicarboxylates.

    PubMed

    Yasui, Eiko; Tsuda, Jyunpei; Ohnuki, Satoshi; Nagumo, Shinji

    2016-01-01

    Pyrrole-2,5-dicarboxylates were rapidly and selectively reduced to the corresponding mono-alcohol using 3 eq of diisobutylaluminum hydride at 0°C. Pyrrole-2,4-dicarboxylate showed the same reactivity; however, the selectivity decreased with pyrrole-3,4-dicarboxylate. When the nitrogen atom of the pyrrole-2,5-dicarboxylate is protected with a benzyl group, selective mono-reduction does not occur. Considering that furan-2,5-dicarboxylates did not give the corresponding mono-alcohol under the same conditions, the unprotected nitrogen atom of pyrrole apparently plays an important role in this selective mono-reduction. PMID:27581630

  19. Towards the Synthesis of Dihydrooxepino[4,3-b]pyrrole-Containing Natural Products via Cope Rearrangement of Vinyl Pyrrole Epoxides.

    PubMed

    Cameron, Alex; Fisher, Brendan; Fisk, Nicholas; Hummel, Jessica; White, Jonathan M; Krenske, Elizabeth H; Rizzacasa, Mark A

    2015-12-18

    An approach to the dihydrooxepino[4,3-b]pyrrole core of diketopiperazine natural products which utilizes a vinyl pyrrole epoxide Cope rearrangement was investigated. It was found that an ester substituent on the epoxide was essential for the [3,3]-rearrangement to occur. Density functional calculations with M06-2X provided explanations for the effects of the pyrrole and ester groups on these rearrangements. PMID:26629727

  20. Efficient syntheses of permethylated derivatives of neolamellarin A, a pyrrolic marine natural product

    NASA Astrophysics Data System (ADS)

    Yin, Ruijuan; Jiang, Long; Wan, Shengbiao; Jiang, Tao

    2015-04-01

    The pyrrole-derived alkaloids with marine origin, especially their permethyl derivatives, have unique structures and promising biological activities. Marine natural product neolamellarins are a collection of lamellarin-like phenolic pyrrole compounds, which can inhibit hypoxia-induced HIF-1 activation. Many pyrrole-derived lamellarin-like alkaloids show potent MDR reversing activity. In this study, five permethylated derivatives of neolamellarin A were synthesized with their MDR reversing activity studied in order to identify new MDR reversal agents. A convergent strategy was adopted to synthesize the permethylated derivatives of neolamellarin A. Pyrrole was first converted into a corresponding N-trisisopropylsilyl (TIPS)-substituted derivative, then through iodination afforded 3,4-diiodinated pyrrole compound. The key intermediate, 3,4-disubstituent-1 H-pyrrole, was obtained through desilylation of 3,4-disubstituent-1-TIPS pyrrole, which was prepared from 3,4-diiodinated pyrrole derivative and aryl boronic acid ester through Suzuki cross-coupling reaction between them. Then, the intermediate, 3,4-disubstituent-1 H-pyrrole, reacted with fresh phenylacetyl chloride under n-BuLi/THF condition afforded the target compounds. Finally, we obtained five novel pyrrolic compounds, permethylated derivatives of neolamellarin A 16a-e, in 30%-37% yield through five step reactions. The bioactivity testing of these compounds are in process.

  1. Calix[4]pyrrole-based ion pair receptors.

    PubMed

    Kim, Sung Kuk; Sessler, Jonathan L

    2014-08-19

    Ion pair receptors, which are able to bind concurrently both a cation and an anion, often display higher selectivity and affinity for specific ion pairs than simple ion receptors capable of recognizing primarily either a cation or an anion. This enhancement in recognition function is attributable to direct or indirect cooperative interactions between cobound ions via electrostatic attractions between oppositely charged ions, as well as to positive allosteric effects. In addition, by virtue of binding the counterions of the targeted ion, ion pair receptors can minimize the solvation of the counterions, which can otherwise have a negative effect on the interactions between the receptors and the targeted ions. As a result of their more favorable interactions, ion pair receptors are attractive for use in applications, such as extraction and sensing, where control of the binding interactions is advantageous. In this Account, we illustrate this potential in the context of ion pair receptors based on the calix[4]pyrrole scaffold. Both simple ditopic ion pair receptors, containing sites for the recognition of a single anion and single cation, and so-called multitopic ion pair receptors will be discussed. The latter systems differ from conventional, so-called ditopic ion pair receptors in that they contain more than one binding site for a given targeted ion (e.g., a cation). This permits a level of selectivity and control over binding function not normally seen for simple ion or ion pair receptors containing one or two binding sites, respectively. Calix[4]pyrroles are macrocyclic compounds consisting of four pyrrole units linked via fully substituted sp(3) hybridized meso carbon atoms. They are effective receptors for Lewis basic anions (e.g., halides) in typical organic media and under certain conditions will recognize ion pairs containing charge diffuse cations, such as a small alkylammonium, imidazolium, or cesium cations. The calix[4]pyrrole framework is further

  2. Oxoanion Recognition by Benzene-based Tripodal Pyrrolic Receptors

    SciTech Connect

    Bill, Nathan; Kim, Dae-Sik; Kim, Sung Kuk; Park, Jung Su; Lynch, Vincent M.; Young, Neil J; Hay, Benjamin; Yang, Youjun; Anslyn, Eric; Sessler, Jonathan L.

    2012-01-01

    Two new tripodal receptors based on pyrrole- and dipyrromethane-functionalised derivatives of a sterically geared precursor, 1,3,5-tris(aminomethyl)-2,4,6-triethylbenzene, are reported; these systems, compounds 1 and 2, display high affinity and selectivity for tetrahedral anionic guests, in particular dihydrogen phosphate, pyrophosphate and hydrogen sulphate, in acetonitrile as inferred from isothermal titration calorimetry measurements. Support for the anion-binding ability of these systems comes from theoretical calculations and a single-crystal X-ray diffraction structure of the 2:2 (host:guest) dihydrogen phosphate complex is obtained in the case of the pyrrole-based receptor system, 1. Keywords anion receptors, dihydrogen phosphate, hydrogen sulphate, X-ray structure, theoretical calculations.

  3. Sensing of antipyretic carboxylates by simple chromogenic calix[4]pyrroles.

    PubMed

    Nishiyabu, Ryuhei; Anzenbacher, Pavel

    2005-06-15

    We present a simple, two- or three-step method for the synthesis of chromogenic octamethylcalix[4]pyrrole-based (OMCP) sensors for anions. Electrophilic aromatic substitution allows for converting the pyrrole moieties of OMCP into a dye. The formation of a sensor-anion complex results in partial charge transfer and a dramatic change in color. The absorption (UV-vis) and NMR titration experiments show that the chromogenic OMCPs sense anions administered as aqueous solutions, even at high ionic strength ( approximately 0.1 M NaCl), while displaying selectivity for pyrophosphate and carboxylate anions. The experiments with polyurethane sensor films show a strong response for aqueous carboxylates, such as antipyretics naproxen approximately ibuprofen > salicylate, without being biased by bicarbonate or carboxy termini of blood plasma proteins. PMID:15941245

  4. Poly(pyrrole)/MoS{sub 2} intercalation compounds

    SciTech Connect

    Wang, L.; Kanatzidis, M.G.

    1995-12-31

    It is known that polymer/MoS{sub 2} intercalation compounds can be prepared through methods such as polymerizing intercalated monomers in MoS{sub 2} or mixing a polymer solution with MoS{sub 2} single layers suspended in water. The latter method is easy to perform, but can only be applied to soluble polymers. We have developed an in-situ polymerization-encapsulation method which was used to insert poly(pyrrole), an insoluble conjugated polymer, into MoS{sub 2}. Synthesis, characterization and electrical properties of the poly(pyrrole)/MoS{sub 2} materials, prepared by this method, will be presented and compared with other related lamellar systems.

  5. Microwave-Assisted Piloty-Robinson Synthesis of 3,4-Disubstituted Pyrroles

    PubMed Central

    Milgram, Benjamin C.; Eskildsen, Katrine; Richter, Steven M.; Scheidt, W. Robert; Scheidt, Karl A.

    2007-01-01

    The synthesis of N-acyl 3,4-disubstituted pyrroles can be accomplished directly from hydrazine and an aldehyde via a Piloty-Robinson pyrrole synthesis. The use of microwave radiation for the cyclization and pyrrole formation greatly reduces the time necessary for this process and facilitates moderate to good yields from hydrazine for the corresponding 3,4-disubstituted products (5–12). By simple hydrolysis, the free N–H pyrroles can be accessed after the Piloty-Robinson reaction and then used directly in the synthesis of octaethylporphyrin (H2OEP, 14) and octaethyltetraphenylporphyrin (H2OETPP, 15). PMID:17432915

  6. Poly(pyrrole-co-pyrrole propylic acid) film and its application in label-free surface plasmon resonance immunosensors.

    PubMed

    Hu, Weihua; Li, Chang Ming; Dong, Hua

    2008-12-01

    In this work, surface plasmon resonance (SPR) was used to study protein immobilization on poly(pyrrole-co-pyrrole propylic acid) (PPy/PPa) for immunosensing applications. SPR was employed to in situ monitor the electropolymerization process and to control thickness of the PPy/PPa copolymer film. Goat IgG as a model protein was covalently immobilized on the carboxyl-containing film through EDC/NHS as the coupling reagents. The effect of pyrrole propylic acid (Pa) proportion in the deposition solution on the protein immobilization capability was systemically investigated. The immobilization efficiency was demonstrated by a label-free SPR immunosensor. The heterogeneous kinetics of the immune reaction was discussed. This work could provide a facile method to immobilize proteins on an electrode surface by electropolymerized copolymer, and renders a universal approach to in situ study the protein immobilization process and sensing kinetics for scientific insights of the heteroimmunosensing scheme particularly in surface chemistry and molecular biology for further improvement of immunosensors. PMID:19068327

  7. Merging gold and organocatalysis: a facile asymmetric synthesis of annulated pyrroles.

    PubMed

    Hack, Daniel; Loh, Charles C J; Hartmann, Jan M; Raabe, Gerhard; Enders, Dieter

    2014-04-01

    The combination of cinchona-alkaloid-derived primary amine and Au(I) -phosphine catalysts allowed the selective C-H functionalization of two adjacent carbon atoms of pyrroles under mild reaction conditions. This sequential dual activation provides seven-membered-ring-annulated pyrrole derivatives in excellent yields and enantioselectivities. PMID:24590817

  8. Hybrid Pyrrole-Imidazole Alkaloids from the Sponge Agelas sceptrum.

    PubMed

    Muñoz, Julie; Köck, Matthias

    2016-02-26

    A chemical investigation of the tropical sponge Agelas sceptrum from Plana Cays (Bahamas) led to the isolation of two hybrid pyrrole-imidazole alkaloids (PIAs), 15'-oxoadenosceptrin (1) and decarboxyagelamadin C (2). Herein, we report their challenging structure elucidation established by NMR and ECD spectroscopy. 15'-Oxoadenosceptrin (1) shows sceptrin merged with an adenine moiety, not yet encountered in the PIA family, whereas decarboxyagelamadin C (2) is a close derivative of agelamadins C to E recently isolated from an Agelas sp. from Okinawa. PMID:26872204

  9. Nucleophilic addition of sulfonamides to bromoacetylenes: facile preparation of pyrroles.

    PubMed

    Yamagishi, Masahito; Nishigai, Ken; Hata, Takeshi; Urabe, Hirokazu

    2011-09-16

    Nucleophilic addition of sulfonamides to 1-bromo-1-alkynes provided (Z)-N-(1-bromo-1-alken-2-yl)-p-toluenesulfonamides in good yield and in a highly regio- and stereoselective manner. Treatment of product (Z)-N-(1-bromo-1-octen-2-yl)-N-allyl-p-toluenesulfonamide with a palladium catalyst under Heck conditions afforded 1-(p-toluenesulfonyl)-2-hexyl-4-methylpyrrole in good yield. Other pyrroles with various substituents can also be prepared in good yield by this method. PMID:21842873

  10. Decarboxylation of pyrrole-2-carboxylic acid: A DFT investigation

    NASA Astrophysics Data System (ADS)

    Cheng, Xueli; Wang, Jinhu; Tang, Ke; Liu, Yongjun; Liu, Chengbu

    2010-08-01

    Decarboxylation is normally a dissociative process, commonly catalyzed by proton or enzymes. The decarboxylation mechanism of pyrrole-2-carboxylic acid involves the addition of water to the carboxyl group, and the C-C bond cleavage leading to the protonated carbonic acid. The direct decarboxylation and decarboxylation aided with water were also investigated to consider the functions of proton and water. Our calculations with G AUSSIAN 03 package show that, with the assistance of H 3O +, the potential energy of the C-C rupture decreases significantly to 9.77 kcal/mol, and the total energy barrier decreases to 33.99 kcal/mol.

  11. Spectroscopic and spectrometric studies of anion recognition with calix[4]pyrroles in different reaction conditions

    NASA Astrophysics Data System (ADS)

    Giri, Nand Gopal; Chauhan, Shive Murat Singh

    2009-09-01

    The binding studies of calix[4]pyrroles ( 1- 6) with fluoro, chloro, bromo, iodo and sulphato anions generated from normal-tetrabutylammoniumfluoride, normal-tetrabutylammoniumchloride, normal-tetrabutylammoniumbromide, normal-tetrabutylammoniumiodide, and normal-tetrabutylammoniumsulphate respectively were investigated by electrospray ionization mass spectrometry (ESI-MS) in dichloromethane-acetonitrile in negative ion mode. The efficacy of a particular calix[4]pyrrole to bind with anions was found maximum at low cone voltage of the instrument, at high cone voltage the binding was suppressed due to removal of anion from the cavity of the macrocycles. The binding strength was found inversely proportional to the size of anion for a particular calix[4]pyrrole. The fragmentation pattern of calix[4]pyrrole was observed at higher cone voltage of ESI-MS and was interpreted. The association constants of calix[4]pyrroles and anions obtained from electronic transition studies were in good agreement with that observed from 1H NMR titration studies.

  12. Biofunctionalization of multiwalled carbon nanotubes by electropolymerized poly(pyrrole-concanavalin A) films.

    PubMed

    Papper, Vladislav; Elouarzaki, Kamal; Gorgy, Karine; Sukharaharja, Ayrine; Cosnier, Serge; Marks, Robert S

    2014-10-13

    The synthesis and electropolymerization of a pyrrolic concanavalin A derivative (pyrrole-Con A) onto a multiwalled carbon nanotube (MWCNT) deposit is reported. Glucose oxidase was then immobilized onto the MWCNT-poly(pyrrole-Con A) coating by affinity carbohydrate interactions with the polymerized Con A protein. The resulting enzyme electrode was applied to the amperometric detection of glucose exhibiting a high sensitivity of 36 mA cm(-2) mol(-1) L and a maximum current density of 350 μA cm(-2) . PMID:25179428

  13. Synthesis of two distinct pyrrole moiety-containing arenes from nitroanilines using Paal-Knorr followed by an indium-mediated reaction.

    PubMed

    Kim, Byeong Hyo; Bae, Seolhee; Go, Ahra; Lee, Hyunseung; Gong, Cheoloh; Lee, Byung Min

    2016-01-01

    Synthesis of arenes substituted with two differently substituted-pyrrole moieties was investigated. A Paal-Knorr condensation reaction of nitroanilines with 1,4-diketone to nitrophenyl-1H-pyrroles followed by an indium-mediated reduction-triggered coupling reaction with another kind of 1,4-diketone resulted in two distinct pyrrole-containing arenes, variously substituted 1-((1H-pyrrol-1-yl)phenyl)-1H-pyrroles, in reasonable yield. PMID:26593044

  14. Antitumor activity of a pyrrole-imidazole polyamide

    PubMed Central

    Yang, Fei; Nickols, Nicholas G.; Li, Benjamin C.; Marinov, Georgi K.; Said, Jonathan W.; Dervan, Peter B.

    2013-01-01

    Many cancer therapeutics target DNA and exert cytotoxicity through the induction of DNA damage and inhibition of transcription. We report that a DNA minor groove binding hairpin pyrrole-imidazole (Py-Im) polyamide interferes with RNA polymerase II (RNAP2) activity in cell culture. Polyamide treatment activates p53 signaling in LNCaP prostate cancer cells without detectable DNA damage. Genome-wide mapping of RNAP2 binding shows reduction of occupancy, preferentially at transcription start sites, but occupancy at enhancer sites is unchanged. Polyamide treatment results in a time- and dose-dependent depletion of the RNAP2 large subunit RPB1 that is preventable with proteasome inhibition. This polyamide demonstrates antitumor activity in a prostate tumor xenograft model with limited host toxicity. PMID:23319609

  15. Experimental and theoretical study of 4-formyl pyrrole derived aroylhydrazones

    NASA Astrophysics Data System (ADS)

    Rawat, Poonam; Singh, R. N.

    2015-03-01

    Two new 4-formyl pyrrole derived aroylhydrazones (3a, b) from ethyl 4-formyl-3,5-dimetyl-1H-pyrrole-2-carboxylate and aroylhydrazides (3,5-dinitrobenzohydrazide/2-hydrazinocarbonyl-N-phenyl-acetamide) have been synthesized and characterized by various spectroscopic techniques 1H NMR, Mass, UV-Visible and FT-IR. The calculated thermodynamic parameters show that the formation of 3a as spontaneous, whereas 3b as non-spontaneous. TD-DFT has been used to calculate the absorption wavelengths, oscillator strength (f) and the nature of electronic excitations. Natural bond orbital (NBO) analysis has been carried out to explore the various conjugative and hyperconjugative interactions and their second order stabilization energy (E(2)) within monomer and its dimer. The dimer formation of 3a, 3b due to result of intermolecular hydrogen bonding N1sbnd H30⋯O84, N1sbnd H28⋯O60 is obvious in 1H NMR, NBO and FT-IR as down field chemical shifts, n(O84) → σ∗(N1sbnd H30), n(O60) → σ∗(N1sbnd H28) interactions, vibrational red shifts, respectively. To determine the strength and nature of hydrogen bonding, topological parameters at bond critical points (BCP) have been analyzed by 'Quantum theory of Atoms in molecules' (QTAIM) in detail. The global electrophilicity index (ω) has been calculated to determine the relative electrophilic strength of molecules. The local reactivity descriptors analyses such as Fukui functions (fk+, fk-), local softnesses (sk+, sk-) and electrophilicity indices (ωk+, ωk-) have been performed to determine the reactive sites within molecules. The first hyperpolarizabilities (β0) of 3a, b have been computed to evaluate the non-linear optical (NLO) response of the investigated molecules.

  16. Synthesis and biological activity of pyrrole analogues of combretastatin A-4.

    PubMed

    Jung, Eun-Kyung; Leung, Euphemia; Barker, David

    2016-07-01

    A series of pyrrole analogues of combretastatin (CA-4) were synthesized and tested for their anti-proliferative activity. The highly diastereoselective acyl-Claisen rearrangement was used to provide 2,3-syn disubstituted morpholine amides which were used as precursors for the various analogues. This synthesis allows for the preparation of 1,2- and 2,3-diaryl-1H-pyrroles which are both geometrically similar to CA-4. These pyrrolic analogues were tested for their anti-proliferative activity against two human cell lines, K562 and MDA-MB-231 with 2,3-diaryl-1H-pyrrole 35 exhibiting the most potent activity with IC50 value of 0.07μM against MDA-MB-231 cell line. PMID:27212068

  17. A Photoinduced Cobalt-Catalyzed Synthesis of Pyrroles through in Situ-Generated Acylazirines.

    PubMed

    Pusch, Stefan; Kowalczyk, Danuta; Opatz, Till

    2016-05-20

    Tetrasubstituted pyrroles can be synthesized in a one-pot procedure from isoxazoles. The process includes the photoinduced in situ formation of acylazirines combined with a subsequent cobalt(II)-catalyzed ring expansion with 1,3-diketones. PMID:27081704

  18. Bipyrrole-Strapped Calix[4]pyrroles: Strong Anion Receptors That Extract the Sulfate Anion

    SciTech Connect

    Kim, Sung Kuk; Lee, Juhoon; Williams, Neil J; Lynch, Vincent M.; Hay, Benjamin; Moyer, Bruce A; Sessler, Jonathan L.

    2014-01-01

    Cage-type calix[4]pyrroles 2 and 3 bearing two additional pyrrole groups on the strap have been synthesized. Compared with the parent calix[4]pyrrole (1), they were found to exhibit remarkably enhanced affinities for anions, including the sulfate anion (TBA+ salts), in organic media (CD2Cl2). This increase is ascribed to participation of the bipyrrole units in anion binding. Receptors 2 and 3 extract the hydrophilic sulfate anion (as the methyltrialkyl(C8-10)ammonium (A336+) salt)) from aqueous media into a chloroform phase with significantly improved efficiency (>10-fold relative to calix[4]pyrrole 1). These two receptors also solubilize into chloroform the otherwise insoluble sulfate salt, (TMA)2SO4 (tetramethylammonium sulfate).

  19. Recent developments in the group-1B-metal-catalyzed synthesis of pyrroles.

    PubMed

    Zhou, Ni-Ni; Zhu, Hai-Tao; Yang, De-Suo; Guan, Zheng-Hui

    2016-07-26

    Pyrroles are important synthetic targets as a result of their occurrence in numerous biologically active molecules, their important roles in diverse living processes, and their utility as versatile intermediates. As a consequence, numerous efforts focused on the development of concise and efficient methods for the construction of pyrroles. Compared with other transition metals, the group 1B metals (Cu, Ag and Au) are probably more versatile and widely used for the synthesis of pyrroles in organic chemistry. Considering the importance of both topics in organic synthesis, here we summarize recent achievements in the synthesis of pyrroles catalyzed by monometallic systems which belong to the group 1B metals (Cu, Ag and Au). PMID:27345290

  20. Discovery of pyrrole-based hepatoselective ligands as potent inhibitors of HMG-CoA reductase.

    PubMed

    Bratton, Larry D; Auerbach, Bruce; Choi, Chulho; Dillon, Lisa; Hanselman, Jeffrey C; Larsen, Scott D; Lu, Gina; Olsen, Karl; Pfefferkorn, Jeffrey A; Robertson, Andrew; Sekerke, Catherine; Trivedi, Bharat K; Unangst, Paul C

    2007-08-15

    In an effort to identify hepatoselective inhibitors of HMG-CoA reductase, two series of pyrroles were synthesized and evaluated. Efforts were made to modify (3R,5R)-7-[3-(4-fluorophenyl)-1-isopropyl-4-phenyl-5-phenylcarbamoyl-1H-pyrrol-2-yl]-3,5-dihydroxy-heptanoic acid sodium salt 30 in order to reduce its lipophilicity and therefore increase hepatoselectivity. Two strategies that were explored were replacement of the lipophilic 3-phenyl substituent with either a polar function (pyridyl series) or with lower alkyl substituents (lower alkyl series) and attachment of additional polar moieties at the 2-position of the pyrrole ring. One compound was identified to be both highly hepatoselective and active in vivo. We report the discovery, synthesis, and optimization of substituted pyrrole-based hepatoselective ligands as potent inhibitors of HMG-CoA reductase for reducing low density lipoprotein cholesterol (LDL-c) in the treatment of hypercholesterolemia. PMID:17560788

  1. Pd-Catalyzed C-H Bond Functionalization on the Indole and Pyrrole Nucleus

    NASA Astrophysics Data System (ADS)

    Beck, Elizabeth M.; Gaunt, Matthew J.

    This review details recent developments in the Pd-catalyzed C-H bond arylation and alkenylation of indoles and pyrroles, aromatic heterocycles that are frequently displayed in natural products and medicinal agents.

  2. Auto-oligomerization and hydration of pyrrole revealed by x-ray absorption spectroscopy

    SciTech Connect

    Schwartz, Craig P.; Uejio, Janel S.; Duffin, Andrew M.; England, Alice H.; Saykally, Richard J.; Prendergast, David

    2009-09-21

    Near edge x-ray absorption fine structure spectra have been measured at the carbon and nitrogen K-edges of the prototypical aromatic molecule, pyrrole, both in the gas phase and when solvated in water, and compared with spectra simulated using a combination of classical molecular dynamics and first principles density functional theory in the excited state core hole approximation. The excellent agreement enabled detailed assignments. Pyrrole is highly reactive, particularly in water, and reaction products formed by the auto-oligomerization of pyrrole are identified. The solvated spectra have been measured at two different temperatures, indicating that the final states remain largely unaffected by both hydration and temperature. This is somewhat unexpected, since the nitrogen in pyrrole can donate a hydrogen bond to water.

  3. Auto-oligomerization and hydration of pyrrole revealed by x-ray absorption spectroscopy

    NASA Astrophysics Data System (ADS)

    Schwartz, Craig P.; Uejio, Janel S.; Duffin, Andrew M.; England, Alice H.; Prendergast, David; Saykally, Richard J.

    2009-09-01

    Near edge x-ray absorption fine structure spectra have been measured at the carbon and nitrogen K-edges of the prototypical aromatic molecule, pyrrole, both in the gas phase and when solvated in water, and compared with spectra simulated using a combination of classical molecular dynamics and first principles density functional theory in the excited state core hole approximation. The excellent agreement enabled detailed assignments. Pyrrole is highly reactive, particularly in water, and reaction products formed by the auto-oligomerization of pyrrole are identified. The solvated spectra have been measured at two different temperatures, indicating that the final states remain largely unaffected by both hydration and temperature. This is somewhat unexpected, since the nitrogen in pyrrole can donate a hydrogen bond to water.

  4. Theoretical study of structure and electronic properties of cyano-substituted pyrroles

    NASA Astrophysics Data System (ADS)

    Rimarčík, Ján; Lukeš, Vladimír; Klein, Erik; Griesser, Markus; Kelterer, Anne-Marie

    2008-11-01

    DFT and ab initio MP2 calculations of optimal geometries, dipole moments, polarizabilities, excitation energies and enthalpies of hydrogen or proton transfer from N-H group for cyano derivatives of pyrrole are presented. CN groups in α and β positions have distinct effects on electron spectra absorption bands. CN in α position causes larger bathochromic shift in comparison to β position. N-H bond dissociation enthalpies (BDE) of substituted pyrroles are higher by 7 kJ mol -1 than pyrrole BDE. Number and position of CN groups do not affect BDEs. Proton affinities of pyrrolyl anions and enthalpies of electron transfer from these anions are proportional to the number of CN groups in molecule. Each CN group causes decrease in proton affinity by 72 kJ mol -1 and 73 kJ mol -1 rise in electron transfer enthalpy. For several studied pyrroles, BDEs, proton affinities and electron transfer enthalpies in water and benzene were computed.

  5. Auto-oligomerization and hydration of pyrrole revealed by x-ray absorption spectroscopy

    SciTech Connect

    Advanced Light Source; Schwartz, Craig P.; Uejio, Janel S.; Duffin, Andrew M.; England, Alice H.; Prendergast, David; Saykally, Richard J

    2009-05-29

    Near edge x-ray absorption fine structure (NEXAFS) spectra have been measured at the carbon and nitrogen K-edges of the prototypical aromatic molecule, pyrrole, both in the gas phase and when solvated in water, and compared with spectra simulated using a combination of classical molecular dynamics and first principles density functional theory in the excited state core hole approximation. The excellent agreement enabled detailed assignments. Pyrrole is highly reactive, particularly in water, and reaction products formed by the auto-oligomerization of pyrrole are identified. The solvated spectra have been measured at two different temperatures, indicating that the final states remain largely unaffected by both hydration and temperature. This is somewhat unexpected, since the nitrogen in pyrrole can donate a hydrogen bond to water.

  6. The synthesis of pyrroles and oxazoles based on gold α-imino carbene complexes.

    PubMed

    Loy, Nicole S Y; Choi, Subin; Kim, Sunggak; Park, Cheol-Min

    2016-05-31

    Cationic gold complexes of α-oximimino carbenes have been identified to react with weak nucleophiles including enol ethers and nitriles. These findings allowed us to develop the highly efficient synthesis of pyrroles and oxazoles. PMID:27152984

  7. Excited state dynamics in pyrrole water clusters: First-principles simulation

    NASA Astrophysics Data System (ADS)

    Frank, Irmgard; Damianos, Konstantina

    2008-01-01

    The excited state dynamics in pyrrole-water clusters is investigated using restricted open-shell Kohn-Sham theory. While the isolated pyrrole molecule dissociates in the excited state, no dissociation is observed in the presence of water molecules. Instead an electron is transferred to water and moves as solvated electron between the water molecules. The results are compared to data obtained from other first-principles and ab initio calculations.

  8. Probing and evaluating anion-π interaction in meso-dinitrophenyl functionalized calix[4]pyrrole isomers.

    PubMed

    Kim, Ajeong; Ali, Rashid; Park, Seok Ho; Kim, Yong-Hoon; Park, Jung Su

    2016-09-25

    We investigate anion-π binding modes in a cis-isomer of 3,5-dinitrophenyl-substituted calix[4]pyrrole with various anions via X-ray crystallographic analyses and compare its binding affinities with those of the corresponding trans-isomer. Sandwich-type anion-π interactions prove to not only enhancing anion binding abilities but also altering the anion-binding selectivity of the calix[4]pyrrole framework. PMID:27549578

  9. Facile synthesis, structural elucidation and spectral analysis of pyrrole 4-imidazole derivatives

    NASA Astrophysics Data System (ADS)

    Singh, R. N.; Rawat, Poonam; Baboo, Vikas

    2015-12-01

    In this work pyrrole 4-imidazole derivatives (3A-3D): benzimidazoles and pyrrole 4-imidazoline have been synthesized by condensation, cyclization and oxidation of ethyl 4-formyl-3,5-dimethyl-1H-pyrrole carboxylate and phenylene diamine derivatives/ethylene diamine. The structure of these biheterocyclic compounds have been derived by elemental and spectroscopic - IR, UV, MS, 1H and 13C NMR analysis as well as theoretical study. The static first hyperpolarizability, β0 values for pyrrole 4-imidazole derivatives, (3A-3D) have been calculated as 10.901 × 10-31, 19.607 × 10-31, 40.323 × 10-31, 5.686 × 10-31 esu, respectively. The gradual increase in β0 value of synthesized pyrrole-benzimidazole derivatives from 3A to 3C is due to addition of acceptors -Cl atom in 3B to -NO2 group in 3C on benzimidazole side. The experimental absorption spectra found to be in UV region and the high β0 values show that the synthesized pyrrole-imidazoles are suitable as non-linear optical (NLO) materials.

  10. Calix[4]pyrroles: highly selective stationary phases for gas chromatographic separations.

    PubMed

    Fan, Jing; Wang, Zhenzhong; Li, Qian; Qi, Meiling; Shao, Shijun; Fu, Ruonong

    2014-10-01

    Calix[4]pyrroles offer a great potential as stationary phases for gas chromatography (GC) due to their unique structures and physicochemical properties. Herein we present the first report of using two calix[4]pyrroles, namely meso-tetra-cyclohexylcalix[4]pyrrole (THCP) and meso-octamethylcalix[4]pyrrole (OMCP). These stationary phases were statically coated onto capillary columns and investigated in terms of column efficiency, polarity, separation performance, thermal stability and repeatability. The columns achieved column efficiencies of 2200-3000plates/m and exhibited nonpolar nature with an average polarity of 67 for THCP and 64 for OMCP, respectively. THCP stationary phase shows high selectivity for analytes of different polarity and exhibits nice peak shapes, especially for aldehydes, alcohols and anilines that are prone to severe peak tailing in GC analysis. Interestingly, THCP stationary phase possesses superior resolving ability for aniline and benzenediol positional isomers while OMCP shows preferential selectivity for nonpolar analytes such as hexane isomers. Moreover, calix[4]pyrrole columns also have good thermal stability up to 260°C and repeatability with a relative standard deviation (RSD%) of less than 0.10% for run-to-run and less than 5.2% for column-to-column. This work demonstrates the unique separation performance of calix[4]pyrroles and their promising future as a new class of GC stationary phases. PMID:25173993

  11. Biocompatible Silk-Poly(Pyrrole) Composite Trilayer Electromechanical Actuators

    NASA Astrophysics Data System (ADS)

    Klemke, Carly; Bradshaw, Nathan; Larson, Jesse; Severt, Sean; Ostrovsky-Snider, Nicholas; Murphy, Amanda; Leger, Janelle

    2015-03-01

    Biocompatible materials capable of controlled actuation are in high demand for use in biomedical applications such as dynamic tissue scaffolding, valves, and steerable surgical tools. Conducting polymers (CPs) have some desirable traits for use as an actuator, such as the ability to operate in biologically relevant fluids and responsiveness to low voltages. However CPs alone are limited due to their brittle nature and poor solubility. Recently we have shown that a composite material of silk and the CP poly(pyrrole) (PPy) shows promising characteristics as an actuator; it is mechanically robust as well as fully biocompatible. Initial proof-of-concept experiments demonstrated that these composites bend under an applied voltage (or current) using a simple bilayer device. Here we present the development of a trilayer device, composed of two conductive layers separated by an insulating silk layer. This configuration has twice the active surface area as a bilayer, potentially increasing the amount of mechanical motion per volt applied. We will discuss the fabrication and characterization of these devices, as well as their performance and future applications of this technology.

  12. Biocompatible Silk-Poly(Pyrrole) Composite Trilayer Actuators

    NASA Astrophysics Data System (ADS)

    Fengel, Carly; Bradshaw, Nathan; Severt, Sean; Murphy, Amanda; Leger, Janelle

    Biocompatible materials capable of controlled actuation are in high demand for use in biomedical applications such as dynamic tissue scaffolding, valves, and steerable surgical tools. Conducting polymers (CPs) have some desirable traits for use as an actuator, such as the ability to operate in biologically relevant fluids and responsiveness to low voltages. However CPs alone are limited due to their brittle nature and poor solubility. Recently we have shown that a composite material of silk and the CP poly(pyrrole) (PPy) shows promising characteristics as an actuator; it is mechanically robust as well as fully biocompatible. Initial proof-of-concept experiments demonstrated that these composites bend under an applied voltage (or current) using a simple bilayer device. Here we present trilayer devices composed of two silk-PPy composite layers separated by an insulating silk layer. This configuration results in more charge is passed in comparison to the analogous bilayer system, as well as a more sustainable current response through cycling, resulting in a larger angle of deflection per volt applied. In addition, the motion of the trilayer devices is more symmetric than that of the bilayer analogs, resulting in a more repeatable movement. We will discuss the fabrication and characterization of these devices, as well as their performance and future applications of this technology.

  13. Hydrogen transfer in excited pyrrole-ammonia clusters

    NASA Astrophysics Data System (ADS)

    David, O.; Dedonder-Lardeux, C.; Jouvet, C.; Kang, H.; Martrenchard, S.; Ebata, T.; Sobolewski, A. L.

    2004-06-01

    The excited state hydrogen atom transfer reaction (ESHT) has been studied in pyrrole-ammonia clusters [PyH-(NH3)n+hν→Py•+•NH4(NH3)n-1]. The reaction is clearly evidenced through two-color R2P1 experiments using delayed ionization and presents a threshold around 235 nm (5.3 eV). The cluster dynamics has also been explored by picosecond time scale experiments. The clusters decay in the 10-30 ps range with lifetimes increasing with the cluster size. The appearance times for the reaction products are similar to the decay times of the parent clusters. Evaporation processes are also observed in competition with the reaction, and the cluster lifetime after evaporation is estimated to be around 10 ns. The kinetic energy of the reaction products is fairly large and the energy distribution seems quasi mono kinetic. These experimental results rule out the hypothesis that the reaction proceeds through a direct N-H bond rupture but rather imply the existence of a fairly long-lived intermediate state. Calculations performed at the CASSCF/CASMP2 level confirm the experimental observations, and provide some hints regarding the reaction mechanism.

  14. Enzymatically cross-linked injectable alginate-g-pyrrole hydrogels for neovascularization.

    PubMed

    Devolder, Ross; Antoniadou, Eleni; Kong, Hyunjoon

    2013-11-28

    Microparticles capable of releasing protein drugs are often incorporated into injectable hydrogels to minimize their displacement at an implantation site, reduce initial drug burst, and further control drug release rates over a broader range. However, there is still a need to develop methods for releasing drug molecules over extended periods of time, in order to sustain the bioactivity of drug molecules at an implantation site. In this study, we hypothesized that a hydrogel formed through the cross-linking of pyrrole units linked to a hydrophilic polymer would release protein drugs in a more sustained manner, because of an enhanced association between cross-linked pyrrole groups and the drug molecules. To examine this hypothesis, we prepared hydrogels of alginate substituted with pyrrole groups, alginate-g-pyrrole, through a horse-radish peroxidase (HRP)-activated cross-linking of the pyrrole groups. The hydrogels were encapsulated with poly(lactic-co-glycolic acid) (PLGA) microparticles loaded with vascular endothelial growth factor (VEGF). The resulting hydrogel system released VEGF in a more sustained manner than Ca(2+) alginate or Ca(2+) alginate-g-pyrrole gel systems. Finally, implantations of the VEGF-releasing HRP-activated alginate-g-pyrrole hydrogel system on chicken chorioallantoic membranes resulted in the formation of blood vessels in higher densities and with larger diameters, compared to other control conditions. Overall, the drug releasing system developed in this study will be broadly useful for regulating release rates of a wide array of protein drugs, and further enhance the quality of protein drug-based therapies. PMID:23886705

  15. Organic-inorganic interactions in the system of pyrrole-hematite-water at elevated temperatures and pressures

    NASA Astrophysics Data System (ADS)

    Ding, Kangle

    2015-11-01

    The distribution and abundance of pyrrolic compounds in sediments and crude oils are most likely influenced by inorganic sedimentary components. In this paper, thermal simulation experiments on the system pyrrole-hematite-water were carried out at elevated temperatures and pressures in order to investigate the effect of organic-inorganic interactions on the preservation of pyrrolic compounds. Compositions of the reaction products were analyzed with GC-MS and GC-FID methods. In the closed system pyrrole-hematite-water, the nitrogen-oxygen exchange obviously occurred at temperatures above 350ºC in accordance with the thermochemical calculation. Large amounts of furan and ammonia were generated after simulation experiments, indicating that the conversion of pyrrole into furan was the dominant reaction. Thermochemical exchange effect between organic nitrogen and inorganic oxygen was obviously facilitated by elevated temperatures and found to be catalyzed by hematite, but inhibited by the increasing volume of water. Thermodynamically water spontaneously reacts with pyrrole above 300ºC. The reaction of pyrrole-hematite-water is an exothermic process in which the reaction heat positively correlates with temperature. The heat released was estimated as 9.0 KJ/(mol) pyrrole - 15.0 KJ/(mol) pyrrole in typical oil reservoirs (100ºC-150ºC) and 15.0-23.0 KJ/(mol) pyrrole in typical gas reservoirs (150ºC-200ºC). The calculated activation energy of the nitrogen-oxygen atom exchange is about 129.59 kJ/mol. According to the experimental results, a small amount of water may effectively initiate the nitrogen-oxygen exchange. The study would improve our evaluating of the preservation and fate of pyrrolic compounds in deeply buried geologic settings and further understanding of thermochemical processes behind the degradation of petroleum.

  16. Structural Studies of Pyrrole-Benzene Complexes by Chirped-Pulse Rotational Spectroscopy

    NASA Astrophysics Data System (ADS)

    Lobsiger, Simon; Perez, Cristobal; Zaleski, Daniel P.; Seifert, Nathan A.; Pate, Brooks H.; Pfaffen, Chantal; Trachsel, Maria A.; Leutwyler, Samuel

    2013-06-01

    Non-covalent intermolecular interactions are important in structural biology. The N-H \\cdots π hydrogen bond between amino acid side chains is an important structural determinant and highly affects the secondary structure of proteins. The pyrrole-benzene complex can be viewed as a model system for studying these fundamental interactions. Previous IR and UV spectroscopic studies of the pyrrole-benzene complex by Dauster et al. support a T-shaped structure with an N-H \\cdots π hydrogen bond to the benzene ring. In order to obtain accurate structural information we have investigated the broadband rotational spectrum of the supersonic-jet cooled complexes of pyrrole with benzene and benzene-d_{1} in the 2-18 GHz frequency range. In addition to the hetero dimer we have also observed the two cyclic mixed trimers (pyrrole)_{2}-benzene and pyrrole-(benzene)_{2}. I. Dauster, C. A. Rice, P. Zielke, and M. A. Suhm Phys. Chem. Chem. Phys. {10}, 2827 (2008) C. Pfaffen, D. Infanger, P. Ottiger, H. M. Frey, and S. Leutwyler Phys. Chem. Chem. Phys. {13}, 14110 (2011)

  17. Electrophilic surface sites as precondition for the chemisorption of pyrrole on GaAs(001) surfaces

    SciTech Connect

    Bruhn, Thomas; Fimland, Bjørn-Ove; Vogt, Patrick

    2015-03-14

    We report how the presence of electrophilic surface sites influences the adsorption mechanism of pyrrole on GaAs(001) surfaces. For this purpose, we have investigated the adsorption behavior of pyrrole on different GaAs(001) reconstructions with different stoichiometries and thus different surface chemistries. The interfaces were characterized by x-ray photoelectron spectroscopy, scanning tunneling microscopy, and by reflectance anisotropy spectroscopy in a spectral range between 1.5 and 5 eV. On the As-rich c(4 × 4) reconstruction that exhibits only nucleophilic surface sites, pyrrole was found to physisorb on the surface without any significant modification of the structural and electronic properties of the surface. On the Ga-rich GaAs(001)-(4 × 2)/(6 × 6) reconstructions which exhibit nucleophilic as well as electrophilic surface sites, pyrrole was found to form stable covalent bonds mainly to the electrophilic (charge deficient) Ga atoms of the surface. These results clearly demonstrate that the existence of electrophilic surface sites is a crucial precondition for the chemisorption of pyrrole on GaAs(001) surfaces.

  18. Tandem Copper-Catalyzed Propargylation/Alkyne Azacyclization/Isomerization Reaction under Microwave Irradiation: Synthesis of Fully Substituted Pyrroles.

    PubMed

    Zhang, Xiao-Yan; Yang, Zhi-Wei; Chen, Zhongzhu; Wang, Jun; Yang, Dong-Lin; Shen, Ze; Hu, Li-Li; Xie, Jian-Wu; Zhang, Jin; Cui, Hai-Lei

    2016-03-01

    A copper-catalyzed and microwave-assisted synthesis of fully substituted pyrroles has been developed. A series of pentasubstituted pyrroles, especially α-arylpyrroles, could be obtained in moderate to good yields (up to 93%) through a tandem propargylation/alkyne azacyclization/isomerization sequence from readily available β-enamino compounds and propargyl acetates. PMID:26872395

  19. Isolation and identification of a pyrrolic glutathione conjugate metabolite of the pyrrolizidine alkaloid monocrotaline.

    PubMed

    Lamé, M W; Morin, D; Jones, A D; Segall, H J; Wilson, D W

    1990-05-01

    This report describes the isolation and identification of a monocrotaline-derived, glutathione-conjugated pyrrole obtained from the bile of male Sprague-Dawley rats. Bile obtained from rats given an intravenous bolus of 14C-monocrotaline was fractionated using a series of chromatographic separations. Initial purification with cholestyramine resin removed bile acid and pigment contaminants. Subsequent anion exchange and reversed-phase HPLC separations yielded several fractions that contained the 14C label and tested positive for pyrroles using Ehrlich's reagent. These fractions were analyzed using fast-atom-bombardment tandem mass spectrometry (FAB MS/MS). In addition to glutathione-conjugated dehydroretronecine, at least one other pyrrole present had similar ionic properties. The latter was not present in amounts sufficient for positive identification. PMID:2111054

  20. Electrooxidation of pyrrole-terminated self-assembled lipoic acid derivatives

    NASA Astrophysics Data System (ADS)

    Cabrita, Joana F.; Viana, Ana S.; Eberle, Christoph; Montforts, Franz-Peter; Mourato, Ana; Abrantes, Luisa M.

    2009-08-01

    New pyrrole derivatives, pyrrolyl lipoic acid (Py-LA 3) and dipyrrolyl lipoic acid (Py 2-LA 2) have been used for surface attachment and immobilisation on gold surfaces, by self-assembly. The electrooxidation of the surface-confined pyrroles was analysed by cyclic voltammetry and the modified electrodes morphological and thickness changes addressed by scanning probe microscopy and ellipsometry. The data support the formation of oligomers as a result of the pendant-pyrrolyl units ease oxidation but provide no evidence of an effective subsequent polymerisation.

  1. Lactic acid as an invaluable green solvent for ultrasound-assisted scalable synthesis of pyrrole derivatives.

    PubMed

    Wang, Shi-Fan; Guo, Chao-Lun; Cui, Ke-ke; Zhu, Yan-Ting; Ding, Jun-Xiong; Zou, Xin-Yue; Li, Yi-Hang

    2015-09-01

    Lactic acid has been used as a bio-based green solvent to study the ultrasound-assisted scale-up synthesis. We report here, for the first time, on the novel and scalable process for synthesis of pyrrole derivatives in lactic acid solvent under ultrasonic radiation. Eighteen pyrrole derivatives have been synthesized in lactic acid solvent under ultrasonic radiation and characterized by (1)H NMR, IR, ESI MS. The results show, under ultrasonic radiation, lactic acid solvent can overcome the scale-up challenges and exhibited many advantages, such as bio-based origin, shorter reaction time, lower volatility, higher yields, and ease of isolating the products. PMID:25605585

  2. Template Synthesis of Decaphyrin without Meso-Bridges: Cyclo[10]pyrrole.

    PubMed

    Okujima, Tetsuo; Ando, Chie; Agrawal, Saurabh; Matsumoto, Hiroki; Mori, Shigeki; Ohara, Keishi; Hisaki, Ichiro; Nakae, Takahiro; Takase, Masayoshi; Uno, Hidemitsu; Kobayashi, Nagao

    2016-06-22

    An acenaphthylene-fused cyclo[10]pyrrole 1b was selectively synthesized via an oxidative coupling reaction of the corresponding 2,2'-bipyrrole with the appropriate dianion template, croconate anion. The structure of 1b as the isolated largest cyclo[n]pyrrole was elucidated by X-ray crystallographic analysis. The absorption spectrum exhibited a markedly red-shifted, intensified L band at 1982 nm, which was interpreted by application of Michl's perimeter and Gouterman's 4-orbital models, supported by magnetic circular dichroism (MCD) data and theoretical calculations. PMID:27268663

  3. Label-free impedimetric biosensor for Salmonella Typhimurium detection based on poly [pyrrole-co-3-carboxyl-pyrrole] copolymer supported aptamer.

    PubMed

    Sheikhzadeh, E; Chamsaz, M; Turner, A P F; Jager, E W H; Beni, V

    2016-06-15

    The Gram-negative bacterium, Salmonella Typhimurium (S. Typhimurium) is a food borne pathogen responsible for numerous hospitalisations and deaths all over the world. Conventional detection methods for pathogens are time consuming and labour-intensive. Hence, there is considerable interest in faster and simpler detection methods. Polypyrrole-based polymers, due to their intrinsic chemical and electrical properties, have been demonstrated to be valuable candidates for the fabrication of chemo/biosensors and functional surfaces. Similarly aptamers have been shown to be good alternatives to antibodies in the development of affinity biosensors. In this study, we report on the combination of poly [pyrrole-co-3-carboxyl-pyrrole] copolymer and aptamer for the development of a label-less electrochemical biosensor suitable for the detection of S. Typhimurium. Impedimetric measurements were facilitated by the effect of the aptamer/target interaction on the intrinsic conjugation of the poly [pyrrole-co-3-carboxyl-pyrrole] copolymer and subsequently on its electrical properties. The aptasensor detected S. Typhimurium in the concentration range 10(2)-10(8) CFU mL(-1) with high selectivity over other model pathogens and with a limit of quantification (LOQ) of 100 CFU mL(-1) and a limit of detection (LOD) of 3 CFU mL(-1). The suitability of the aptasensor for real sample detection was demonstrated via recovery studies performed in spiked apple juice samples. We envisage this to be a viable approach for the inexpensive and rapid detection of pathogens in food, and possibly in other environmental samples. PMID:26836649

  4. Cognition and order in Langmuir-Blodgett films of a 3-hexadecyl pyrrole and ferrocene-derivatized pyrrole mixed monolayer system

    NASA Astrophysics Data System (ADS)

    Samuelson, L.; Rahman, A. K. M.; Puglia, G. P.; Clough, S.; Tripathy, S.; Inagaki, T.; Yang, X. Q.; Skotheim, T. A.; Okamoto, Y.

    Novel, self-assembled materials were designed and produced from first principle to possess unique structural hierarchy and electronic and optical properties. The Langmuir-Blodgett technique was used to study the molecular organization of a mixed 3-hexadecyl pyrrole (3HDP) and ferrocene-derivatized pyrrole (Fc-Py) surfactant system. The pyrrole moiety was chosen for its' well established electronic and optical properties when polymerized, while ferrocene, it is theorized, if properly oriented into a Langmuir-Blodgett monolayer film may show a layered array of transition metals which would be extremely valuable as a model for 2-D magnets. The ferrocene group may also provide the possibility of charge coupling between neutral ferrocene and oxidized ferricenium which could be controlled electrochemically or photochemically. It has been determined that stable monolayer films of the mixed system could be formed at the air-water interface. The growth and assembly process led to polypyrrole 2-D lattices with heretofore unsurpassed order. In fact, the process of template polymerization leads to a new crystal phase for the polypyrrole component of the thin film structure. Various monolayer and multilayer films were prepared on platinum coated substrates for surface spectroscopic characterization using synchrotron radiation. Near Edge X-Ray Absorption Fine Structure studies revealed that highly ordered multilayer structures are being formed.

  5. Cognition and order in Langmuir-Blodgett films of a 3-hexadecyl pyrrole and ferrocene-derivatized pyrrole mixed monolayer system

    SciTech Connect

    Samuelson, L.; Rahman, A.K.M.; Puglia, G.P.; Clough, S.; Tripathy, S.; Inagaki, T.; Yang, X.Q.; Skotheim, T.A.; Okamoto, Y.

    1989-01-01

    Novel, self-assembled materials have been designed and produced from first principle to possess unique structural hierarchy and electronic and optical properties. The Langmuir-Blodgett technique was used to study the molecular organization of a mixed 3-hexadecyl pyrrole (3HDP) and ferrocene-derivatized pyrrole (Fc-Py) surfactant system. The pyrrole moiety was chosen for its' well established electronic and optical properties when polymerized, while ferrocene, it is theorized, if properly oriented into a Langmuir-Blodgett monolayer film may show a layered array of transition metals which would be extremely valuable as a model for two-dimensional magnets. The ferrocene group may also provide the possibility of charge coupling between neutral ferrocene and oxidized ferricenium which could be controlled electrochemically or photochemically. It has been determined that stable monolayer films of the mixed system could be formed at the air-water interface. The growth and assembly process led to polypyrrole 2-D lattices with heretofore unsurpassed order. In fact, the process of template polymerization leads to a new crystal phase for the polypyrrole component of the thin film structure. Various monolayer and multilayer films were prepared on platinum coated substrates for surface spectroscopic characterization using synchrotron radiation. Near Edge X-Ray Absorption Fine Structure studies revealed that highly ordered multilayer structures are being formed. 8 refs., 4 figs., 1 tab.

  6. Identification of a new electron-transfer relaxation pathway in photoexcited pyrrole dimers

    NASA Astrophysics Data System (ADS)

    Neville, Simon P.; Kirkby, Oliver M.; Kaltsoyannis, Nikolas; Worth, Graham A.; Fielding, Helen H.

    2016-04-01

    Photoinduced electron transfer is central to many biological processes and technological applications, such as the harvesting of solar energy and molecular electronics. The electron donor and acceptor units involved in electron transfer are often held in place by covalent bonds, π-π interactions or hydrogen bonds. Here, using time-resolved photoelectron spectroscopy and ab initio calculations, we reveal the existence of a new, low-energy, photoinduced electron-transfer mechanism in molecules held together by an NH⋯π bond. Specifically, we capture the electron-transfer process in a pyrrole dimer, from the excited π-system of the donor pyrrole to a Rydberg orbital localized on the N-atom of the acceptor pyrrole, mediated by an N-H stretch on the acceptor molecule. The resulting charge-transfer state is surprisingly long lived and leads to efficient electronic relaxation. We propose that this relaxation pathway plays an important role in biological and technological systems containing the pyrrole building block.

  7. Identification of a new electron-transfer relaxation pathway in photoexcited pyrrole dimers.

    PubMed

    Neville, Simon P; Kirkby, Oliver M; Kaltsoyannis, Nikolas; Worth, Graham A; Fielding, Helen H

    2016-01-01

    Photoinduced electron transfer is central to many biological processes and technological applications, such as the harvesting of solar energy and molecular electronics. The electron donor and acceptor units involved in electron transfer are often held in place by covalent bonds, π-π interactions or hydrogen bonds. Here, using time-resolved photoelectron spectroscopy and ab initio calculations, we reveal the existence of a new, low-energy, photoinduced electron-transfer mechanism in molecules held together by an NH⋯π bond. Specifically, we capture the electron-transfer process in a pyrrole dimer, from the excited π-system of the donor pyrrole to a Rydberg orbital localized on the N-atom of the acceptor pyrrole, mediated by an N-H stretch on the acceptor molecule. The resulting charge-transfer state is surprisingly long lived and leads to efficient electronic relaxation. We propose that this relaxation pathway plays an important role in biological and technological systems containing the pyrrole building block. PMID:27098394

  8. Synthesis of Dihydropyrrolizine and Tetrahydroindolizine Scaffolds from Pyrroles by Titanocene(III) Catalysis.

    PubMed

    Hildebrandt, Sven; Gansäuer, Andreas

    2016-08-01

    A synthetic approach to dihydropyrrolizine and tetrahydroindolizine scaffolds from pyrroles has been developed. The key step, a titanocene(III)-catalyzed radical arylation that proceeds by C-H functionalization is atom-economical and tolerates a large variety of functional groups. The reaction is therefore attractive for the swift assembly of functional and structural diversity. PMID:27383638

  9. Identification of a new electron-transfer relaxation pathway in photoexcited pyrrole dimers

    PubMed Central

    Neville, Simon P.; Kirkby, Oliver M.; Kaltsoyannis, Nikolas; Worth, Graham A.; Fielding, Helen H.

    2016-01-01

    Photoinduced electron transfer is central to many biological processes and technological applications, such as the harvesting of solar energy and molecular electronics. The electron donor and acceptor units involved in electron transfer are often held in place by covalent bonds, π–π interactions or hydrogen bonds. Here, using time-resolved photoelectron spectroscopy and ab initio calculations, we reveal the existence of a new, low-energy, photoinduced electron-transfer mechanism in molecules held together by an NH⋯π bond. Specifically, we capture the electron-transfer process in a pyrrole dimer, from the excited π-system of the donor pyrrole to a Rydberg orbital localized on the N-atom of the acceptor pyrrole, mediated by an N–H stretch on the acceptor molecule. The resulting charge-transfer state is surprisingly long lived and leads to efficient electronic relaxation. We propose that this relaxation pathway plays an important role in biological and technological systems containing the pyrrole building block. PMID:27098394

  10. Synthesis and Evaluation of Novel Pyrroles and Pyrrolopyrimidines as Anti-Hyperglycemic Agents

    PubMed Central

    Mohamed, M. S.; Ali, S. A.; Abdelaziz, D. H. A.; Fathallah, Samar S.

    2014-01-01

    A series of pyrrole and pyrrolopyrimidine derivatives were examined for their in vivo antihyperglycemic activity. Compounds Ia–c,e, and IVg showed promising antihyperglycemic activity equivalent to a well-known standard antihyperglycemic drug, Glimepiride (Amaryl, 4 mg/kg). In this paper, we examine and discuss the structure-activity relationships and antihyperglycemic activity of these compounds. PMID:25054134

  11. Three-component synthesis of polysubstituted pyrroles from α-diazoketones, nitroalkenes, and amines.

    PubMed

    Hong, Deng; Zhu, Yuanxun; Li, Yao; Lin, Xufeng; Lu, Ping; Wang, Yanguang

    2011-09-01

    Polysubstituted pyrroles are regiospecifically synthesized via the copper-catalyzed three-component reaction of α-diazoketones, nitroalkenes, and amines under aerobic conditions. The cascade process involves an N-H insertion of carbene, a copper-catalyzed oxidative dehydrogenation of amine, and a [3 + 2] cycloaddition of azomethine ylide. PMID:21830767

  12. Calix[4]pyrrole: A New Ion-Pair Receptor As Demonstrated by Liquid-Liquid Extraction

    SciTech Connect

    Wintergerst, Mr. Matthieu; Levitskaia, Tatiana G.; Moyer, Bruce A; Sessler, Jonathan L.; Delmau, Laetitia Helene

    2008-01-01

    Solvent-extraction studies provide confirming evidence that meso-octamethylcalix[4]pyrrole acts as an ion-pair receptor for cesium chloride and cesium bromide in nitrobenzene solution. The stoichiometry of the interaction under extraction conditions from water to nitrobenzene was determined from plots of the cesium distribution ratios vs cesium salt and receptor concentration, indicating the formation of an ionpaired 1:1:1 cesium:calix[4]pyrrole:halide complex. The extraction results were modeled to evaluate the equilibria inherent to the solvent-extraction system, with either chloride or bromide. The binding energy between the halide anion and the calix[4]pyrrole was found to be about 7 kJ/mol larger for cesium chloride than for the cesium bromide. The ion-pairing free energies between the calix[4]pyrrole-halide complex and the cesium cation are nearly the same within experimental uncertainty for either halide, consistent with a structural model in which the Cs+ cation resides in the calix bowl. These results are unexpected since nitrobenzene is a polar solvent that generally leads to dissociated complexes in the organic phase when used as a diluent in extraction studies of univalent ions. Control studies involving nitrate revealed no evidence of ion pairing for CsNO3 under conditions identical to those where it is observed for CsCl and CsBr.

  13. Calix[4]pyrrole: A New Ion-Pair Receptor As Demonstrated by Liquid-Liquid Extraction

    SciTech Connect

    Wintergerst, Mr. Matthieu; Levitskaia, Tatiana G.; Moyer, Bruce A; Sessler, Jonathan L.; Delmau, Laetitia Helene

    2008-01-01

    Solvent extraction studies provide confirming evidence that meso-octamethylcalix[4]pyrrole acts as an ion-pair receptor for cesium chloride and cesium bromide in nitrobenzene solution. The stoichiometry of the interaction under extraction conditions from water to nitrobenzene was determined from plots of the cesium distribution ratios vs. cesium salt and receptor concentration, indicating the formation of an ion-paired 1:1:1 cesium:calix[4]pyrrole:halide complex. The extraction results were modeled to evaluate the equilibria inherent to the solvent extraction system, either with chloride or bromide. The binding energy between the halide anion and the calix[4]pyrrole was found to be about 7 kJ/mol larger for cesium chloride than for the cesium bromide. The ion-pairing free energies between the calix[4]pyrrole-halide complex and the cesium cation are nearly the same within experimental uncertainty for either halide, consistent with a structural model in which the Cs+ cation resides in the calix bowl. These results are unexpected since nitrobenzene is a very polar solvent that generally leads to dissociated complexes in the organic phase when used as a diluent in extraction studies of univalent ions. Control studies involving nitrate revealed no evidence of ion-pairing for CsNO3 under conditions identical to those where it is observed for CsCl and CsBr.

  14. Super Aryl-Extended Calix[4]pyrroles: Synthesis, Binding Studies, and Attempts To Gain Water Solubility.

    PubMed

    Escobar, Luis; Aragay, Gemma; Ballester, Pablo

    2016-09-12

    We describe the synthesis of unprecedented calix[4]pyrrole receptors featuring "super aryl extended" (SAE) cavities. We elaborated the aromatic cavity provided by the αααα-isomer of para-tetraiodo-meso-phenyl calix[4]pyrrole by installing ethynyl-aryl substituents at its upper rim. We report the binding properties of the prepared SAE-calix[4]pyrrole tetraester towards pyridyl-N-oxides. The binding data revealed the formation of thermodynamically and kinetically highly stable 1:1 complexes. The complexation-induced chemical shifts indicated the formation of hydrogen bonds and aromatic interactions with the calix-core adopting the cone conformation. We quantified the additional interactions established between the four terminal aryl groups and the para-phenyl substituent of 4-phenyl pyridine N-oxide to be in the order of 1 kcal mol(-1) . The complex formation rate was found to be close to the diffusion control suggesting that the free host adopted a 1,3-alternate conformation. Finally, we attempted to gain water solubility of SAE-calix[4]pyrroles using derivatives that display four ionizable or charged groups at their upper rims. PMID:27505617

  15. Comments on the Treatment of Aromaticity and Acid-Base Character of Pyridine and Pyrrole in Contemporary Organic Chemistry Textbooks

    NASA Astrophysics Data System (ADS)

    Anderson, Hugh J.; Bauer, Ludwig

    1999-08-01

    Presentations of aromaticity and acid-base character of pyridine and pyrrole in 18 contemporary organic chemistry textbooks were surveyed. Superficially, each of these two monoaza aromatic heterocycles retains an electron pair on its sp2-hybridized ring nitrogen, ostensibly available for neutralization with a proton to form a salt. The two nonbonded electrons in pyridine, in an sp2-hybridized orbital outside the ring, are not interacting with the 6p-electron aromatic sextet and thus are fully available for neutralization to form an N+-H pyridinium cation. However, in pyrrole, the nonbonded electron pair on nitrogen is part of the aromatic 6p- electron sextet and is not available for NH salt formation, since this would generate an aliphatic (highly reactive) diene imminium cation, which would destroy pyrrole's aromaticity. However, electrophilic attack of a proton in an irreversible manner attacks C-2 of pyrrole to form a resonance-stabilized cationic intermediate capable of further transformations. Pyridine is classified correctly as a weak base, while pyrrole in aqueous solutions is classified essentially neutral. In reality, pyrrole is a weak acid, neutralized by strong bases to generate a stable aromatic and highly reactive nucleophilic anion. Most authors fail to stress the acidic property of pyrrole and some organic texts need revision to eliminate some misconceptions and omissions.

  16. Ground state structures and excited state dynamics of pyrrole-water complexes: Ab initio excited state molecular dynamics simulations

    NASA Astrophysics Data System (ADS)

    Kumar, Anupriya; Kołaski, Maciej; Kim, Kwang S.

    2008-01-01

    Structures of the ground state pyrrole-(H2O)n clusters are investigated using ab initio calculations. The charge-transfer driven femtosecond scale dynamics are studied with excited state ab initio molecular dynamics simulations employing the complete-active-space self-consistent-field method for pyrrole-(H2O)n clusters. Upon the excitation of these clusters, the charge density is located over the farthest water molecule which is repelled by the depleted π-electron cloud of pyrrole ring, resulting in a highly polarized complex. For pyrrole-(H2O), the charge transfer is maximized (up to 0.34a.u.) around ˜100fs and then oscillates. For pyrrole-(H2O)2, the initial charge transfer occurs through the space between the pyrrole and the π H-bonded water molecule and then the charge transfer takes place from this water molecule to the σ H-bonded water molecule. The total charge transfer from the pyrrole to the water molecules is maximized (up to 0.53a.u.) around ˜100fs.

  17. Direct Arylation of Pyrroles via Indirect Electroreductive C-H Functionalization Using Perylene Bisimide as an Electron-Transfer Mediator.

    PubMed

    Sun, Guoquan; Ren, Shuya; Zhu, Xinhai; Huang, Manna; Wan, Yiqian

    2016-02-01

    The indirect electroreductive coupling of aryl halides and pyrroles was successfully conducted using a catalytic amount of perylene bisimide as a mediator in 1-ethyl-3-methylimidazolium bis((trifluoromethyl)sulfonyl)imide ([EMIM]NTf2)/DMSO. PMID:26800089

  18. Hydrogen-bonded structures of pyrrole-solvent clusters: Infrared cavity ringdown spectroscopy and quantum chemical calculations

    NASA Astrophysics Data System (ADS)

    Matsumoto, Yoshiteru; Honma, Kenji

    2009-02-01

    The hydrogen-bonded structures of pyrrole-solvent (H2O,CH3OH,C2H5OH) binary clusters were studied by the combination of experimental and theoretical techniques. Infrared cavity ringdown spectroscopy was applied to observe the NH and OH stretching vibrations of the clusters. The structures, binding energies, and normal modes of the binary clusters were obtained by quantum chemical calculations of the MP2/6-31+G(d,p) and B3LYP/6-311+G(d,p) levels. For the 1:1 clusters of pyrrole-H2O, pyrrole-CH3OH, and pyrrole-C2H5OH, the hydrogen-bonded NH stretching vibrations were observed at 3448, 3414, and 3408 cm-1, respectively. They were redshifted from the NH stretching vibration of the pyrrole monomer, and the amounts of the redshift were proportional to the proton affinities of the solvent molecules. MP2 level calculations revealed that the σ-type (NH⋯O) hydrogen-bonded structures had 7.6-9.0 kJ/mol larger binding energies than the π-type structures (OH⋯π electron cloud of pyrrole), and that the vibrational frequencies of the σ-type structures are consistent with the observed spectra. In addition to the 1:1 clusters, the NH or OH stretching vibrations of pyrrole-CH3OH binary clusters were observed at 3432 and 3549 cm-1. Among three optimized structures of the pyrrole-(CH3OH)2, the σ-π bridge pyrrole-(CH3OH)2 provided a reasonable agreement between the observed and calculated vibrational frequencies. For the pyrrole-H2O binary clusters, three new bands were observed at 3414, 3435, and 3541 cm-1. These bands are consistent with the calculated NH and OH stretching vibrations of the (pyrrole)2-H2O cluster, which has a closed cyclic hydrogen-bonded structure.

  19. Graphene/Poly(aniline-co-pyrrole) Nanocomposite: Potential Candidate for Supercapacitor and Microwave Absorbing Applications.

    PubMed

    Sahoo, Sumanta; Bhattacharya, Pallab; Dhibar, Saptarshi; Hatui, Goutam; Das, Tanya; Das, Chapal Kumar

    2015-09-01

    A simple and cost-effective in-situ chemical route to prepare the nanocomposites based on graphene and Poly(aniline-co-pyrrole) [PPP] has been proposed. Introduction of graphene changes the morphology of copolymer from spherical to fiber like. Graphene/Poly(aniline-co-pyrrole) [GPPP] nanocomposite achieved highest specific capacitance of 351 F/g and energy density of 124.8 Wh/Kg at 10 mV/s scan rate. The composite also obtained moderate specific capacitance retention of 66% after 500 cycles, which establish its potentiality as supercapacitor electrode materials. The composite also exhibited high electrical conductivity and superior microwave absorbing properties (maximum reflection loss is -29.97 dB). The absorption range corresponding to ≥ 90% absorption (or -10 dB) is 2.72 GHz which is excellent for the microwave absorbing applications. PMID:26716265

  20. Ab initio multiple cloning simulations of pyrrole photodissociation: TKER spectra and velocity map imaging

    DOE PAGESBeta

    Makhov, Dmitry V.; Saita, Kenichiro; Martinez, Todd J.; Shalashilin, Dmitrii V.

    2014-12-11

    In this study, we report a detailed computational simulation of the photodissociation of pyrrole using the ab initio Multiple Cloning (AIMC) method implemented within MOLPRO. The efficiency of the AIMC implementation, employing train basis sets, linear approximation for matrix elements, and Ehrenfest configuration cloning, allows us to accumulate significant statistics. We calculate and analyze the total kinetic energy release (TKER) spectrum and Velocity Map Imaging (VMI) of pyrrole and compare the results directly with experimental measurements. Both the TKER spectrum and the structure of the velocity map image (VMI) are well reproduced. Previously, it has been assumed that the isotropicmore » component of the VMI arises from long time statistical dissociation. Instead, our simulations suggest that ultrafast dynamics contributes significantly to both low and high energy portions of the TKER spectrum.« less

  1. Direct Synthesis of Highly Substituted Pyrroles and Dihydropyrroles Using Linear Selective Hydroacylation Reactions.

    PubMed

    Majhail, Manjeet K; Ylioja, Paul M; Willis, Michael C

    2016-06-01

    Rhodium(I) catalysts incorporating small bite-angle diphosphine ligands, such as (Cy2 P)2 NMe or bis(diphenylphosphino)methane (dppm), are effective at catalysing the union of aldehydes and propargylic amines to deliver the linear hydroacylation adducts in good yields and with high selectivities. In situ treatment of the hydroacylation adducts with p-TSA triggers a dehydrative cyclisation to provide the corresponding pyrroles. The use of allylic amines, in place of the propargylic substrates, delivers functionalised dihydropyrroles. The hydroacylation reactions can also be combined in a cascade process with a Rh(I) -catalysed Suzuki-type coupling employing aryl boronic acids, providing a three-component assembly of highly substituted pyrroles. PMID:27106284

  2. Toxic Dopamine Metabolite DOPAL Forms an Unexpected Dicatechol Pyrrole Adduct with Lysines of α-Synuclein.

    PubMed

    Werner-Allen, Jon W; DuMond, Jenna F; Levine, Rodney L; Bax, Ad

    2016-06-20

    Parkinson's disease has long been known to involve the loss of dopaminergic neurons in the substantia nigra and the coincidental appearance of Lewy bodies containing oligomerized forms of α-synuclein. The "catecholaldehyde hypothesis" posits a causal link between these two central pathologies mediated by 3,4-dihydroxyphenylacetaldehyde (DOPAL), the most toxic dopamine metabolite. Here we determine the structure of the dominant product in reactions between DOPAL and α-synuclein, a dicatechol pyrrole lysine adduct. This novel modification results from the addition of two DOPAL molecules to the Lys sidechain amine through their aldehyde moieties and the formation of a new carbon-carbon bond between their alkyl chains to generate a pyrrole ring. The product is detectable at low concentrations of DOPAL and its discovery should provide a valuable chemical basis for future studies of DOPAL-induced crosslinking of α-synuclein. PMID:27158766

  3. Langmuir-Blodgett films of a pyrrole and ferrocene mixed surfactant system

    SciTech Connect

    Samuelson, L.; Rahman, A.K.M.; Clough, S.; Tripathy, S.; Hale, P.D.; Inagaki, T.; Skotheim, T.A.; Okamoto, Y. . Dept. of Chemistry; Brookhaven National Lab., Upton, NY; Polytechnic Univ., Brooklyn, NY . Dept. of Chemistry)

    1989-01-01

    The Langmuir-Blodgett technique was used to study the molecular organization of a mixed 3-hexadecyl pyrrole (3HDP) and ferrocene-derivatized pyrrole (Fc-Py) surfactant system. It has been determined that stable monolayer films of the mixed system could be formed at the air-water interface. The growth and assembly process led to polypyrrole 2-D lattices with heretofore unsurpassed order. In fact, the process of template polymerization, it appears, leads to a new crystal phase for the polypyrrole component of the thin film structure. Various monolayer and multilayer films were prepared on platinum coated substrates for surface spectroscopic characterization. Near Edge X-Ray Absorption Fine Structure (NEXAFS) studies revealed that highly ordered multilayer structures are being formed. Electrochemical studies have been initiated to determine the feasibility of these films in molecular electronic device applications. 13 refs., 6 figs., 1 tab.

  4. Acetylcholinesterase-Inhibiting Activity of Pyrrole Derivatives from a Novel Marine Gliding Bacterium, Rapidithrix thailandica

    PubMed Central

    Sangnoi, Yutthapong; Sakulkeo, Oraphan; Yuenyongsawad, Supreeya; Kanjana-opas, Akkharawit; Ingkaninan, Kornkanok; Plubrukarn, Anuchit; Suwanborirux, Khanit

    2008-01-01

    Acetylcholinesterase-inhibiting activity of marinoquinoline A (1), a new pyrroloquinoline from a novel species of a marine gliding bacterium Rapidithrix thailandica, was assessed (IC50 4.9 μM). Two related pyrrole derivatives, 3-(2′-aminophenyl)-pyrrole (3) and 2,2-dimethyl-pyrrolo-1,2-dihydroquinoline (4), were also isolated from two other strains of R. thailandica. The isolation of 3 from a natural source is reported here for the first time. Compound 4 was proposed to be an isolation artifact derived from 3. The two isolated compounds were virtually inactive in the acetylcholinesterase-inhibitory assay (enzyme inhibition < 30% at 0.1 g L−1). PMID:19172195

  5. Inhibition of endotoxin-induced airway epithelial cell injury by a novel family of pyrrol derivates.

    PubMed

    Cabrera-Benítez, Nuria E; Pérez-Roth, Eduardo; Ramos-Nuez, Ángela; Sologuren, Ithaisa; Padrón, José M; Slutsky, Arthur S; Villar, Jesús

    2016-06-01

    Inflammation and apoptosis are crucial mechanisms for the development of the acute respiratory distress syndrome (ARDS). Currently, there is no specific pharmacological therapy for ARDS. We have evaluated the ability of a new family of 1,2,3,5-tetrasubstituted pyrrol compounds for attenuating lipopolysaccharide (LPS)-induced inflammation and apoptosis in an in vitro LPS-induced airway epithelial cell injury model based on the first steps of the development of sepsis-induced ARDS. Human alveolar A549 and human bronchial BEAS-2B cells were exposed to LPS, either alone or in combination with the pyrrol derivatives. Rhein and emodin, two representative compounds with proven activity against the effects of LPS, were used as reference compounds. The pyrrol compound that was termed DTA0118 had the strongest inhibitory activity and was selected as the lead compound to further explore its properties. Exposure to LPS caused an intense inflammatory response and apoptosis in both A549 and BEAS-2B cells. DTA0118 treatment downregulated Toll-like receptor-4 expression and upregulated nuclear factor-κB inhibitor-α expression in cells exposed to LPS. These anti-inflammatory effects were accompanied by a significantly lower secretion of interleukin-6 (IL-6), IL-8, and IL-1β. The observed antiapoptotic effect of DTA0118 was associated with the upregulation of antiapoptotic Bcl-2 and downregulation of proapoptotic Bax and active caspase-3 protein levels. Our findings demonstrate the potent anti-inflammatory and antiapoptotic properties of the pyrrol DTA0118 compound and suggest that it could be considered as a potential drug therapy for the acute phase of sepsis and septic ARDS. Further investigations are needed to examine and validate these mechanisms and effects in a clinically relevant animal model of sepsis and sepsis-induced ARDS. PMID:26999659

  6. Pyridazine N-Oxides as Precursors of Metallocarbenes: Rhodium-Catalyzed Transannulation with Pyrroles.

    PubMed

    Kanchupalli, Vinaykumar; Joseph, Desna; Katukojvala, Sreenivas

    2015-12-01

    Pyridazine N-oxides are used for the first time as precursors of metallocarbenes. These nitrogen-rich heterocycles led to the discovery of a novel acceptor and donor-acceptor enalcarbenoids. The synthetic utility of these metallocarbenes was demonstrated in the rhodium-catalyzed denitrogenative transannulation of pyridazine N-oxides with pyrroles to the valuable alkyl, 7-aryl, and 7-styryl indoles. The transannulation strategy was applied to the synthesis of a potent anticancer agent. PMID:26588048

  7. Design and synthesis of hepatoselective, pyrrole-based HMG-CoA reductase inhibitors.

    PubMed

    Pfefferkorn, Jeffrey A; Song, Yuntao; Sun, Kuai-Lin; Miller, Steven R; Trivedi, Bharat K; Choi, Chulho; Sorenson, Roderick J; Bratton, Larry D; Unangst, Paul C; Larsen, Scott D; Poel, Toni-Jo; Cheng, Xue-Min; Lee, Chitase; Erasga, Noe; Auerbach, Bruce; Askew, Valerie; Dillon, Lisa; Hanselman, Jeffrey C; Lin, Zhiwu; Lu, Gina; Robertson, Andrew; Olsen, Karl; Mertz, Thomas; Sekerke, Catherine; Pavlovsky, Alexander; Harris, Melissa S; Bainbridge, Graeme; Caspers, Nicole; Chen, Huifen; Eberstadt, Matthias

    2007-08-15

    This manuscript describes the design and synthesis of a series of pyrrole-based inhibitors of HMG-CoA reductase for the treatment of hypercholesterolemia. Analogs were optimized using structure-based design and physical property considerations resulting in the identification of 44, a hepatoselective HMG-CoA reductase inhibitor with excellent acute and chronic efficacy in a pre-clinical animal models. PMID:17574412

  8. Synthesis of multisubstituted pyrroles from doubly activated cyclopropanes using an iron-mediated oxidation domino reaction.

    PubMed

    Zhang, Zhiguo; Zhang, Wei; Li, Junlong; Liu, Qingfeng; Liu, Tongxin; Zhang, Guisheng

    2014-11-21

    An alternative route has been developed for the construction of multisubstituted pyrrole derivatives from readily available, doubly activated cyclopropanes and anilines using an iron-mediated oxidation domino reaction (i.e., sequential ring-opening, cyclization, and dehydrogenation reactions). This reaction uses readily available reactants and is tolerant of a broad range of substrates, with the desired products being formed in good to excellent yields. PMID:25330125

  9. An amperometric urea biosensor based on covalent immobilization of urease onto an electrochemically prepared copolymer poly (N-3-aminopropyl pyrrole-co-pyrrole) film.

    PubMed

    Rajesh; Bisht, Vandana; Takashima, Wataru; Kaneto, Keiichi

    2005-06-01

    An amperometric biosensor has been developed for the quantitative determination of urea in aqueous solution. The principle is based on the use of pH-sensitive redox active dissolved hematein molecule. The enzyme, urease (Urs), was covalently immobilized on a conducting copolymer poly (N-3-aminopropyl pyrrole-co-pyrrole) film, electrochemically prepared onto an indium-tin-oxide (ITO)-coated glass plate. The covalent linkage of enzyme and porous morphology of the polymer film lead to high enzyme loading and an increased lifetime stability of the enzyme electrode. Amperometric response was measured as a function of concentration of urea, at fixed bias voltage of 0.0 V vs. Ag/AgCl in a phosphate buffer (pH 7.0). The electrode gives a linear response range of 0.16-5.02 mM for urea in aqueous medium. The response time is 40 s reaching to a 95% steady-state current value, and 80% of the enzyme activity is retained for about 2 months. PMID:15744952

  10. Evaluation on the inhibition of pyrrol-2-yl ethanone derivatives to lactate dehydrogenase and anticancer activities.

    PubMed

    Lu, Na-Na; Weng, Zhao-Yue; Chen, Qiu-Yun; Boison, Daniel; Xiao, Xin-Xin; Gao, Jing

    2016-08-01

    Lactate dehydrogenase A (LDH-A) is a potentially important metabolic target for the inhibition of the highly activated glycolysis pathway in cancer cells. In order to develop bifunctional compounds as inhibitor of LDH-A and anticancer agents, two pyrrol-2-yl methanone (or ethanone) derivatives (PM1 and PM2) were synthesized and evaluated as inhibitors of LDH-A based on the enzyme assay and cell assay by spectroscopy analysis. Fluorescence and CD spectra results demonstrated that both the change of second structure of LDH-A and the affinity interaction for compounds to LDH-A gave great effect on the activity of LDH-A. In particular, low concentration of compounds (1μμ-25μμ) could change the level of pyruvate in cancer cells. Moreover, the in vitro assay results demonstrated that pyrrol-2-yl ethanone derivatives can inhibit the proliferation of cancer cells. Therefore, pyrrol-2-yl ethanone derivatives (PM2) can be both LDH-A inhibitor and anticancer agents. PMID:27104676

  11. ESI-MS Characterization of a Novel Pyrrole-Inosine Nucleoside that Interacts with Guanine Bases

    PubMed Central

    Pierce, Sarah E.; Sherman, Courtney L.; Jayawickramarajah, Janarthanan; Lawrence, Candace M.; Sessler, Jonathan L.; Brodbelt, Jennifer S.

    2008-01-01

    Based on binding studies undertaken by electrospray ionization-mass spectrometry, a synthetic pyrrole-inosine nucleoside, 1, capable of forming an extended three-point Hoogsteen-type hydrogen-bonding interaction with guanine, is shown to form specific complexes with two different quadruplex DNA structures [dTG4T]4 and d(T2G4)4 as well as guanine rich duplex DNA. The binding interactions of two other analogs were evaluated in order to unravel the structural features that contribute to specific DNA recognition. The importance of the Hoogsteen interactions was confirmed through the absence of specific binding when the pyrrole NH hydrogen-bonding site was blocked or removed. While 2, with a large blocking group, was not found to interact with virtually any form of DNA, 3, with the pyrrole functionality missing, was found to interact non-specifically with several types of DNA. The specific binding of 1 to guanine rich DNA emphasizes the necessity of careful ligand design for specific sequence recognition. PMID:18790136

  12. A General Route to β-Substituted Pyrroles by Transition-Metal Catalysis.

    PubMed

    Bunrit, Anon; Sawadjoon, Supaporn; Tšupova, Svetlana; Sjöberg, Per J R; Samec, Joseph S M

    2016-02-19

    An atom-efficient route to pyrroles substituted in the β-position has been achieved in four high yielding steps by a combination of Pd, Ru, and Fe catalysis with only water and ethene as side-products. The reaction is general and gives pyrroles substituted in the β-position with linear and branched alkyl, benzyl, or aryl groups in overall good yields. The synthetic route includes a Pd-catalyzed monoallylation step of amines with substituted allylic alcohols that proceeds to yield the monoallylated products in moderate to excellent yields. In a second step, unsymmetrical diallylated aromatic amines are generated from the reaction of a second allylic alcohol with high selectivity in moderate to good yields by control of the reaction temperature. Ru-catalyzed ring-closing metathesis performed on the diallylated aromatic amines yields the pyrrolines substituted in the β-position in excellent yields. By addition of ferric chloride to the reaction mixture, a selective aromatization to yield the corresponding pyrroles substituted in the β-position was achieved. A reaction mechanism involving a palladium hydride, generated from insertion of palladium to O-H of an allyl alcohol, that is responsible for the C-O bond cleavage to generate the π-allyl intermediate is proposed. PMID:26789020

  13. Evaluation on the inhibition of pyrrol-2-yl ethanone derivatives to lactate dehydrogenase and anticancer activities

    NASA Astrophysics Data System (ADS)

    Lu, Na-Na; Weng, Zhao-Yue; Chen, Qiu-Yun; Boison, Daniel; Xiao, Xin-Xin; Gao, Jing

    2016-08-01

    Lactate dehydrogenase A (LDH-A) is a potentially important metabolic target for the inhibition of the highly activated glycolysis pathway in cancer cells. In order to develop bifunctional compounds as inhibitor of LDH-A and anticancer agents, two pyrrol-2-yl methanone (or ethanone) derivatives (PM1 and PM2) were synthesized and evaluated as inhibitors of LDH-A based on the enzyme assay and cell assay by spectroscopy analysis. Fluorescence and CD spectra results demonstrated that both the change of second structure of LDH-A and the affinity interaction for compounds to LDH-A gave great effect on the activity of LDH-A. In particular, low concentration of compounds (1 μμ-25 μμ) could change the level of pyruvate in cancer cells. Moreover, the in vitro assay results demonstrated that pyrrol-2-yl ethanone derivatives can inhibit the proliferation of cancer cells. Therefore, pyrrol-2-yl ethanone derivatives (PM2) can be both LDH-A inhibitor and anticancer agents.

  14. Structure and Raman spectra of pyridyl substituted diketo-pyrrolo-pyrrole isomers and polymorphs

    NASA Astrophysics Data System (ADS)

    Luňák, Stanislav, Jr.; Vyňuchal, Jan; Horáčková, Pavlína; Frumarová, Božena; Žák, Zdirad; Kučerík, Jiří; Salyk, Ota

    2010-11-01

    A complete series of symmetrical and unsymmetrical isomeric pairs of 4- and 2-pyridyl substituted diketo-pyrrolo-pyrroles was synthesized. Both polymorphs of 3,6-bis-(4'-pyridyl)-2,5-dihydro-pyrrolo[3,4- c]pyrrole-1,4-dione were prepared. Asymmetrical 3-phenyl-6-pyridine-2'-yl-2,5-dihydro-pyrrolo[3,4- c]pyrrole-1,4-dione was synthesized for the first time and X-ray structure of its monocrystal was determined. Density functional theory calculations of the ground state geometry were compared with experimental X-ray diffraction data. Theoretical Raman spectra enabled to assign the main peaks of the experimental ones for all four pyridyl DPP derivatives. Crucial spectral features, which reflect the molecular and crystal (H-bond invoked) asymmetry are C dbnd O (pyrrolinone) stretching, N sbnd H (pyrrolinone) bending and trigonal (hetero)aryl bending. Sublimation temperatures of 2-pyridyl derivatives are significantly lower than for 4-pyridyl derivatives, in which stronger in-plane NH(pyrrolinone) sbnd CO(pyrrolinone) intermolecular H-bonding dominates.

  15. A reinterpretation of the electronic spectrum of pyrrole: A quantum dynamics study

    SciTech Connect

    Neville, S. P.; Worth, G. A.

    2014-01-21

    The first band in the electronic spectrum of pyrrole is calculated from wavepacket propagations performed using the MCTDH method. To do so, two model Hamiltonians are constructed to describe seven low-lying excited electronic states of pyrrole. These Hamiltonians are based on the vibronic coupling model, and are parameterised via fitting to extensive CASPT2 and EOM-CCSD calculations. A detailed analysis of the structure of pyrrole's electronic spectrum in the range 5.5 to 6.5 eV is made. The role of intensity borrowing from transitions to ππ{sup *} states by lower-lying 3s and 3p Rydberg states is assessed, and reassignments of much of the spectrum are subsequently made which indicate that most of the states in the spectrum are predominantly Rydberg in character. The resulting conclusions drawn serve to highlight the limitations of assignments based on the matching of calculated vertical excitation energies and the positions of peak maxima observed in electronic spectra.

  16. Synthesis of 1,2,3-Substituted Pyrroles from Propargylamines via a One-Pot Tandem Enyne Cross Metathesis-Cyclization Reaction.

    PubMed

    Chachignon, Helene; Scalacci, Nicolò; Petricci, Elena; Castagnolo, Daniele

    2015-05-15

    Enyne cross metathesis of propargylamines with ethyl vinyl ether enables the one-pot synthesis of substituted pyrroles. A series of substituted pyrroles, bearing alkyl, aryl, and heteroaryl substituents, has been synthesized in good yields under microwave irradiation. The reactions are rapid and procedurally simple and also represent a facile entry to the synthetically challenging 1,2,3-substituted pyrroles. The value of the methodology is further corroborated by the conversion of pyrroles into 3-methyl-pyrrolines and the derivatization of the 3-methyl-substituent arising from the metathesis reaction. PMID:25897951

  17. Synthesis, crystal structure and complexing properties of calix[4]pyrrole 10α,20α-disubstituted Schiff bases and urea derivatives

    NASA Astrophysics Data System (ADS)

    Han, Ying; Sun, Juan-Juan; Wang, Gen-Liang; Yan, Chao-Guo

    2015-03-01

    10α,20α-di(4-aminophenyl)calix[4]pyrroles were synthesized from the acid catalyzed cyclization of dialkyldipyrromethanes with p-nitroacetophenone and sequential hydrogenation of nitro group, which in turn reacted with several aromatic aldehydes and pyridinecarboxaldehydes as well as isocyanates to give a series of calix[4]pyrrole 10α,20α-disubstituted Schiff base and urea derivatives. The crystal structures of the newly-formed calix[4]pyrrole Schiff bases were successfully determined by X-ray diffraction. The complexing property of calix[4]pyrrole Schiff bases for transition metal ions was also investigated with UV-Vis spectroscopy.

  18. Reactions of a Ruthenium Complex with Substituted N-Propargyl Pyrroles.

    PubMed

    Chia, Pi-Yeh; Huang, Shou-Ling; Liu, Yi-Hong; Lin, Ying-Chih

    2016-04-01

    In an investigation into the chemical reactions of N-propargyl pyrroles 1 a-c, containing aldehyde, keto, and ester groups on the pyrrole ring, with [Ru]-Cl ([Ru]=Cp(PPh3 )2 Ru; Cp=C5 H5 ), an aldehyde group in the pyrrole ring is found to play a crucial role in stimulating the cyclization reaction. The reaction of 1 a, containing an aldehyde group, with [Ru]-Cl in the presence of NH4 PF6 yields the vinylidene complex 2 a, which further reacts with allyl amine to give the carbene complex 6 a with a pyrrolizine group. However, if 1 a is first reacted with allyl amine to yield the iminenyne 8 a, then the reaction of 8 a with [Ru]-Cl in the presence of NH4 PF6 yields the ruthenium complex 9 a, containing a cationic pyrrolopyrazinium group, which has been fully characterized by XRD analysis. These results can be adequately explained by coordination of the triple bond of the propargyl group to the ruthenium metal center first, followed by two processes, that is, formation of a vinylidene intermediate or direct nucleophilic attack. Additionally, the deprotonation of 2 a by R4 NOH yields the neutral acetylide complex 3 a. In the presence of NH4 PF6 , the attempted alkylation of 3 a resulted in the formation the Fischer-type amino-carbene complex 5 a as a result of the presence of NH3 , which served as a nucleophile. With KPF6 , the alkylation of 3 a with ethyl and benzyl bromoacetates afforded the disubstituted vinylidene complexes 10 a and 11 a, containing ester groups, which underwent deprotonation reactions to give the furyl complexes 12 a and 13 a, respectively. For 13 a, containing an O-benzyl group, subsequent 1,3-migration of the benzyl group was observed to yield product 14 a with a lactone unit. Similar reactivity was not observed for the corresponding N-propargyl pyrroles 1 b and 1 c, which contained keto and ester groups, respectively, on the pyrrole ring. PMID:26865008

  19. Characterization of a glucose sensor prepared by electropolymerization of pyrroles containing a tris-bipyridine osmium complex.

    PubMed

    Tsujimoto, Masaki; Yabutani, Tomoki; Sano, Atsushi; Tani, Yuji; Murotani, Hiroki; Mishima, Yuji; Maruyama, Kenichi; Yasuzawa, Mikito; Motonaka, Junko

    2007-01-01

    A glucose sensor was developed by electrocopolymerization using pyrroles containing a tris-bipyridine (bpy) osmium complex (Os-py), pyrrole (py), pyrrole propanoic acid (PPA) and glucose oxidase (GOx) to improve the key performance characteristics, such as the sensitivity, selectivity, and long-term stability. Tris-bipyridine osmium pyrrole complexes with four different methylene moieties were utilized to correlate the methylene length with the glucose sensor performance. The electrocatalytic response of glucose was clearly observed at electrodes modified with Os-py, except for the electrode immobilized with the Os-py complex containing the shortest methylene moiety. The current response to glucose increased up to a concentration of 100 mmol dm(-3). The electrocatalytic response to glucose at the [Os(bpy)(2)(py(6)-bpy)](2+/3+)/py/PPA/GOx electrode was stable for more than 100 days. Dissolved oxygen and potential interference compounds (ascorbic acid, uric acid, and acetaminophen) minimally perturbed the current response to glucose at the [Os(DM-bpy)(2)(py(6)-bpy)](2+/3+)/py/PPA/GOx electrode. Based on these results, a longer methylene moiety appears to improve the performance characteristics of a glucose sensor fabricated via the electropolymerization of tris-bipyridine osmium pyrrole complexes. PMID:17213625

  20. Role of the ribose-specific marker furfuryl-amine in the formation of aroma active 1-(furan-2-ylmethyl)-1H-pyrrole (or furfuryl-pyrrole) derivatives.

    PubMed

    Nikolov, Plamen Y; Yaylayan, Varoujan A

    2012-10-10

    Furfuryl-pyrroles possess a diverse range of organoleptic properties described as roasted, chocolaty, green, horseradish-like, and mushroom-like and are detected in various foods such as coffee, chocolate, popcorn, and roasted chicken. Although their origin in food was attributed to furfuryl-amine, the latter has not been detected so far in Maillard model systems or in foods. In this study, furfuryl-amine was shown to be formed specifically from ribose through nitrogen atom transfer from the α-amino group of any amino acid. Such a transfer can be achieved through decarboxylation of the Schiff base adduct and isomerization followed by hydrolysis. Through the use of (15)Nα-lysine it was revealed that only the (15)Nα nitrogen atom was incorporated into its structure, indicating a specific role for the carboxylate moiety in the mechanism of its formation. Furthermore, isotope labeling studies have indicated that furfuryl-pyrrole derivatives can be formed by the interaction of 2 mol of furfuryl-amine with 3-deoxyribosone followed by dehydration and cyclization to form 1-(furan-2-yl)-N-{[1-(furan-2-ylmethyl)-1H-pyrrol-2-yl]methylidene}methanamine. After hydrolysis, this intermediate can generate furfuryl-formyl-pyrrole, furfuryl-pyrrole carboxylic acid, and furfuryl-pyrrole. In this study, the furfuryl-amine derivatives were also detected in different coffee beans after pyrolysis and analysis by GC-MS. The potential of these compounds to form in aqueous model systems at a temperature of 120 °C was also demonstrated. PMID:22994507

  1. Sustainable Pathways to Pyrroles through Iron-Catalyzed N-Heterocyclization from Unsaturated Diols and Primary Amines.

    PubMed

    Yan, Tao; Barta, Katalin

    2016-09-01

    Pyrroles are prominent scaffolds in pharmaceutically active compounds and play an important role in medicinal chemistry. Therefore, the development of new, atom-economic, and sustainable catalytic strategies to obtain these moieties is highly desired. Direct catalytic pathways that utilize readily available alcohol substrates have been recently established; however, these approaches rely on the use of noble metals such as ruthenium or iridium. Here, we report on the direct synthesis of pyrroles using a catalyst based on the earth-abundant and inexpensive iron. The method uses 2-butyne-1,4-diol or 2-butene-1,4-diol that can be directly coupled with anilines, benzyl amines, and aliphatic amines to obtain a variety of N-substituted pyrroles in moderate-to-excellent isolated yields. PMID:27493031

  2. Biomimetic synthesis of water-soluble conducting copolymers/homopolymers of pyrrole and 3,4-ethylenedioxythiophene.

    PubMed

    Bruno, Ferdinando F; Fossey, Stephen A; Nagarajan, Subhalakshmi; Nagarajan, Ramaswamy; Kumar, Jayant; Samuelson, Lynne A

    2006-02-01

    A novel biomimetic route for the synthesis of electrically conducting homopolymers/copolymers of pyrrole and 3,4-ethylenedioxythiophene (EDOT) in the presence of a polyelectrolyte, such as polystyrene sulfonate (SPS), is presented. A poly(ethylene glycol)-modified hematin (PEG-hematin) was used to catalyze the homopolymerization of pyrrole and EDOT as well as copolymerization of EDOT and pyrrole in the presence of SPS to yield homopolymers of polypyrrole/SPS and PEDOT/SPS as well as a polypyrrole-co-poly(3,4-ethylenedioxythiophene)/SPS complex. Spectroscopic characterization [UV-visible, Fourier transform infrared (FTIR), and X-ray photoelectron spectroscopy (XPS)], thermal analysis, (TGA), and electrical conductivity studies for these complexes indicated the presence of a stable and electrically conductive form of these polymers. Furthermore, the presence of SPS that serves as a charge-compensating dopant in this complex provides a unique combination of properties such as processability and water solubility. PMID:16471934

  3. Organic field-effect transistors based on Langmuir-Blodgett films of an extended porphyrin analogue - Cyclo[6]pyrrole

    NASA Astrophysics Data System (ADS)

    Xu, Hai; Wang, Ying; Yu, Gui; Xu, Wei; Song, Yabin; Zhang, Deqing; Liu, Yunqi; Zhu, Daoben

    2005-10-01

    Field-effect transistors using cyclo[6]pyrrole as active layers were prepared by Langmuir-Blodgett (LB) method. Cyclo[6]pyrrole is a porphyrin analogue with an extended π-system(22-π-electron). It could form a stable, reproducible monolayer at the air-water interface, which could be transferred onto a substrate with nearly unity transfer ratio and resulted in multilayer structure with the cyclo[6]pyrrole molecules stacking in a face-to-face configuration due to strong intermolecular π-π interactions. An un-optimized device based on this LB films displayed a mobility of 0.014 cm 2 V -1 s -1, which is higher than the highest value of the devices based on typical porphyrins reported.

  4. Organocatalytic Enantioselective Aza-Friedel-Crafts Reaction of Cyclic Ketimines with Pyrroles using Imidazolinephosphoric Acid Catalysts.

    PubMed

    Nakamura, Shuichi; Matsuda, Nazumi; Ohara, Mutsuyo

    2016-07-01

    Organocatalytic enantioselective aza-Friedel-Crafts reactions of cyclic ketimines with pyrroles or indoles were catalyzed by imidazoline/phosphoric acid catalysts. The reaction was applied to various 3H-indol-3-ones to afford products in excellent yields and enantioselectivities. The chiral catalysts can be recovered by a single separation step using column chromatography and are reusable without further purification. Based on the experimental investigations, a possible transition state has been proposed to explain the origin of the asymmetric induction. PMID:27124556

  5. Visible Light Initiated Hantzsch Synthesis of 2,5-Diaryl-Substituted Pyrroles at Ambient Conditions.

    PubMed

    Lei, Tao; Liu, Wen-Qiang; Li, Jian; Huang, Mao-Yong; Yang, Bing; Meng, Qing-Yuan; Chen, Bin; Tung, Chen-Ho; Wu, Li-Zhu

    2016-05-20

    Irradiation of a mixture of enamines and α-bromo ketones, with a catalytic amount of Ir(ppy)3 by visible light (λ = 450 nm), enables the production of various 2,5-diaryl-substituted pyrroles in good to excellent yields. The key intermediates in this reaction have been identified as alkyl radicals, generated from single-electron transfer from the photoexcited Ir(ppy)3* to α-bromo ketones, which subsequently react with a broad range of enamines to undergo the Hantzsch reaction rapidly at ambient conditions. PMID:27199225

  6. Synthesis of Substituted Pyrroles via Copper-Catalyzed Cyclization of Ethyl Allenoates with Activated Isocyanides.

    PubMed

    Lu, Kui; Ding, Fang; Qin, Long; Jia, Xiaoliang; Xu, Chuanming; Zhao, Xia; Yao, Qingwei; Yu, Peng

    2016-08-01

    A new method for the synthesis of di- and trisubstituted pyrroles via copper-catalyzed cyclization of ethyl allenoates with activated isocyanides has been developed. In contrast to related annulation reactions previously reported, this new process features a skeletal rearrangement in which the aryl sulfonyl moiety, which functions as the electron-withdrawing group in the α-carbon of the isocyanide, was found to migrate to the γ-carbon of the starting allenoate in the final product for the first time. PMID:27348611

  7. Ac conduction in conducting poly pyrrole-poly vinyl methyl ether polymer composite materials

    SciTech Connect

    Saha, S.K.; Mandal, T.K.; Mandal, B.M.; Chakravorty, D.

    1997-03-01

    Composite materials containing conducting polypyrrole and insulating poly (vinyl methyl ether) (PVME) have been synthesized by oxidative polymerization of pyrrole in ethanol using FeCl{sub 3} oxidant in the presence of PVME. The ac conductivity measurements have been carried out in the frequency range of 100 Hz to 10 MHz and in the temperature range of 110 to 350 K. The frequency dependent conductivity has been explained on the basis of a small polaron tunnelling mechanism. {copyright} {ital 1997 American Institute of Physics.}

  8. N-[1-(1H-Pyrrol-2-yl)ethyl­idene]aniline

    PubMed Central

    Su, Bi-Yun; Li, Lei; Wang, Jia-Xiang; Li, Xuan-Yan

    2012-01-01

    There are two independent mol­ecules in the asymmetric unit of the title compound, C12H12N2, in which the pyrrole and benzene rings form dihedral angles of 72.37 (7) and 82.34 (8)°. The imino N—C bond lengths in the two mol­ecules are equal [1.286 (2) Å] and indicate C=N character. In the crystal, each mol­ecule forms a dimer with an inversion-related mol­ecule through a pair of classical N—H⋯N hydrogen bonds. PMID:23125684

  9. The effect of relative humidity on the detection of pyrrole by PTR-MS for OH reactivity measurements

    NASA Astrophysics Data System (ADS)

    Sinha, V.; Custer, T. G.; Kluepfel, T.; Williams, J.

    2009-04-01

    The hydroxyl radical (OH) is the most important atmospheric oxidant. Recently Sinha et al. [1] developed a new method to measure the total OH reactivity of ambient air (OH sink) employing a proton transfer reaction mass spectrometer (PTR-MS) as a detector. The new method uses pyrrole (C4H4NH) as a reagent and for an OH reactivity measurement this species must be measured under both dry (~ 0% RH) and humid air ( > 30% RH). Here, we investigate the sensitivity dependence of the PTR-MS for pyrrole, as a function of relative humidity in the sampled air. Various normalizations with respect to the H3O+ ion and its different hydrated clusters ions H3O+(H2O)n=1,2,3 are compared. It is shown that both the primary ion signal (H3O+ ion m/z = 19) and the first water cluster ion H3O+(H2O) (m/z = 37) should be used for pyrrole quantification. However, in spite of using this normalization, the PTR-MS sensitivity for pyrrole changes by as much as 16 % between dry (~ 0% RH) and humid air (above 30 % RH), with higher sensitivity when the sampled air is humid. Thus, for accurate quantification of pyrrole using a PTR-MS, calibration factors appropriate to dry and humid air should be employed. We recommend that humidity dependence of the PTR-MS be taken into account when reactivity measurements are performed using the pyrrole based comparative reactivity method (CRM). [1]. V. Sinha, J. Williams, J.N. Crowley, and J. Lelieveld, Atmos. Chem. Phys. 8 (2008) 2213-2227

  10. The effect of relative humidity on the detection of pyrrole by PTR-MS for OH reactivity measurements

    NASA Astrophysics Data System (ADS)

    Sinha, V.; Custer, T. G.; Kluepfel, T.; Williams, J.

    2009-05-01

    The hydroxyl radical (OH) is the most important atmospheric oxidant. Recently Sinha et al. [V. Sinha, J. Williams, J.N. Crowley, J. Lelieveld, Atmos. Chem. Phys. 8 (2008) 2213] developed a new method to measure the total OH reactivity of ambient air (OH sink) employing a proton transfer reaction mass spectrometer (PTR-MS) as a detector. The new method uses pyrrole (C4H4NH) as a reagent and for an OH reactivity measurement this species must be measured under both dry (~0% RH) and humid air (>30% RH). Here, we investigate the sensitivity dependence of the PTR-MS for pyrrole, as a function of relative humidity in the sampled air. Various normalizations with respect to the H3O+ ion and its different hydrated cluster ions H3O+(H2O)n=1,2,3 are compared. It is shown that both the primary ion signal (H3O+ ion m/z = 19) and the first water cluster ion H3O+(H2O) (m/z = 37) should be used for pyrrole quantification. However, in spite of using this normalization, the PTR-MS sensitivity for pyrrole changes by as much as 16% between dry (~0% RH) and humid air (above 30% RH), with higher sensitivity when the sampled air is humid. Thus, for accurate quantification of pyrrole using a PTR-MS, calibration factors appropriate to dry and humid air should be employed. We recommend that humidity dependence of the PTR-MS be taken into account when reactivity measurements are performed using the pyrrole based comparative reactivity method (CRM).

  11. Synthesis of furans and pyrroles via migratory and double migratory cycloisomerization reactions of homopropargylic aldehydes and imines

    PubMed Central

    Shiroodi, Roohollah Kazem; Vera, Claudia I. Rivera; Dudnik, Alexander S.; Gevorgyan, Vladimir

    2015-01-01

    A novel gold-catalyzed divergent sysnthesis of furans and pyrroles employing readily available homopropargylic aldehydes and imines have been developed. The regiochemical outcome of this reaction is dependent on the substituent on the terminal alkyne of substrate. Thus, substrates possessing alkyl and aryl substituent at the alkyne moiety produce 2,3,5-substituted furans and pyrroles via a migratory cycloisomerizaton reaction. Whereas, their silicon analogues are capable to undergo a double migratory process leading to 2,3,4-substituted heterocycles. PMID:26185336

  12. Biological activity of two new pyrrole derivatives against stored-product species: influence of temperature and relative humidity.

    PubMed

    Boukouvala, M C; Kavallieratos, N G; Athanassiou, C G; Hadjiarapoglou, L P

    2016-08-01

    Members of the pyrrole group are likely to have interesting properties that merit additional investigation as insecticides at the post-harvest stages of agricultural commodities. In the present work, the insecticidal effect of two new pyrrole derivatives, ethyl 3-(benzylthio)-4,6-dioxo-5-phenyl-2,4,5,6-tetrahydropyrrolo[3,4-c]pyrrole-carboxylate (3i) and isopropyl 3-(benzylthio)-4,6-dioxo-5-phenyl-2,4,5,6-tetrahydropyrrolo[3,4-c]pyrrole-carboxylate (3k) were studied as stored-wheat protectants against two major stored-product insect species, the confused flour beetle, Tribolium confusum Jaquelin du Val adults and larvae and the Mediterranean flour moth, Ephestia kuehniella Zeller larvae at different doses (0.1, 1 and 10 ppm), exposure intervals (7, 14 and 21 days), temperatures (20, 25 and 30°C) and relative humidity (55 and 75%) levels. For T. confusum adults, in the case of the pyrrole derivative 3i, mortality was low and it did not exceed 32.2% in wheat treated with 10 ppm 3i at 30°C and 55% relative humidity. Progeny production was very low (<1 individual/vial) in all combinations of 55% relative humidity, including control. In the case of the pyrrole derivative 3k, mortality reached 67.8% at 30°C and 55% relative humidity in wheat treated with 10 ppm after 21 days of exposure. Progeny production was low in all tested combinations (≤0.7 individuals/vial) of 55% relative humidity, including control. For T. confusum larvae, in the case of the pyrrole derivative 3i, at the highest dose, mortality was 82.2% at 25°C and 55% relative humidity whereas in the case of 3k it reached 77.8% at the same combination. In contrast, mortality at 75% relative humidity remained very low and did not exceed 13.3%. For E. kuehniella larvae, the highest mortalities, 44.4 and 63.3%, were observed in 10 ppm at 25°C and 55% relative humidity for both pyrrole derivatives. The compounds tested here have a certain insecticidal effect, but this effect is moderated by the exposure

  13. The Organocatalytic Approach to Enantiopure 2H- and 3H-Pyrroles: Inhibitors of the Hedgehog Signaling Pathway.

    PubMed

    Kötzner, Lisa; Leutzsch, Markus; Sievers, Sonja; Patil, Sumersing; Waldmann, Herbert; Zheng, Yiying; Thiel, Walter; List, Benjamin

    2016-06-27

    A divergent approach to enantioenriched 2H- and 3H-pyrroles catalyzed by a spirocyclic phosphoric acid is reported that makes use of a Fischer-type indolization and a [1,5]-alkyl shift. Catalyzed by the chiral phosphoric acid STRIP, good to excellent yields and enantioselectivities could be obtained. Remarkably, biological evaluation reveals one of these novel 2H-pyrroles to be a potent but nontoxic inhibitor of the Hedgehog signaling pathway by binding to the Smoothened protein. PMID:27239757

  14. Properties of poly(ethylene terephthalate) track membranes with a polymer layer obtained by plasma polymerization of pyrrole vapors

    NASA Astrophysics Data System (ADS)

    Kravets, L.; Dmitriev, S.; Lizunov, N.; Satulu, V.; Mitu, B.; Dinescu, G.

    2010-03-01

    The structure and the charge transport properties of poly(ethylene terephthalate) track membrane modified by pyrrole plasma were studied. It was found that polymer deposition on the surface of a track membrane via plasma polymerization of pyrrole results in the creation of composite nanomembranes that, in the case of the formation of a semipermeable layer, possess asymmetric conductivity in electrolyte solutions - a rectification effect similar to that of a p-n junction in semiconductors. It is caused by presence in the membranes of two layers with different functional groups and also by the pore geometry. Such membranes can be used to create chemical and biochemical sensors.

  15. Synthesis and structures of transition metal pacman complexes of heteroditopic Schiff-base pyrrole macrocycles.

    PubMed

    Leeland, James W; Finn, Colin; Escuyer, Bérengère; Kawaguchi, Hiroyuki; Nichol, Gary S; Slawin, Alexandra M Z; Love, Jason B

    2012-12-01

    A series of polydentate dual-compartment, Schiff-base pyrrole macrocycles has been prepared through the straightforward Lewis acid catalysed [1 + 1] condensation reactions between ONO or O(5)-linked aryldiamines and dipyrromethane dialdehydes. These macrocycles display hydrogen-bond acceptor and donor properties and provide distinct N(4) and O(5)/ONO donor sets for metallation reactions, so forming alkali, alkaline earth, and transition metal complexes that were characterised spectroscopically and crystallographically. While the conformationally flexible O(5) donor set allows the formation of helical potassium salt structures, the transition metal complexes of all variants of these macrocycles invariably adopt wedged, Pacman-shaped structures in which the metal is bound in the pyrrole-imine N(4) donor set, so leaving the ONO/O(5) donor set pendant and apical. In some cases (V, Cr, and Co), this proximate combination of Lewis acid binding site and hydrogen bond acceptor facilitates the coordination of water within the molecular cleft; alternatively, direct interaction between the pendant arm and the metal is seen (e.g. Ti). Higher order [2 + 2] macrocycles were also prepared as minor, inseparable by-products of cyclisation, and Fe(2), Mn(2), and Co(2) complexes of these larger macrocycles were found to adopt binuclear helical structures by X-ray crystallography. PMID:23026851

  16. Adsorption and thermal dissociation of pyrrole on Si(1 0 0)-2 × 1

    NASA Astrophysics Data System (ADS)

    Qiao, Ming-Hua; Tao, Feng; Cao, Yong; Xu, Guo-Qin

    2003-10-01

    The adsorption and thermal reaction of pyrrole on Si(1 0 0)-2 × 1 have been studied using X-ray and ultra-violet photoelectron spectroscopies (XPS and UPS) and high resolution electron energy loss spectroscopy (HREELS). At low exposures, Pyrrole chemisorbs molecularly at 120 K with its ring parallel to the surface via the π-interaction. The increase in coverage causes tilting of chemisorbed molecules towards the surface normal, attributable to the adsorbate-adsorbate interactions. At ˜350 K, the N-H bond scission of the π-bonded species occurs, resulting in Si-H and vertically N-bonded pyrrolyl on the surface. The pyrrolyl species is thermally stable to 700 K. Compared to furan or thiophene on Si(1 0 0), this higher thermal stability is ascribed to the passivation effect of the H-atoms from N-H bond dissociation and the less strain within the pyrrolyl-substrate complex. Further annealing to 900 K results in the formation of silicon carbide and silicon nitride on the substrate.

  17. Magnetic Circular Dichroism Spectroscopy of meso-Tetraphenylporphyrin-Derived Hydroporphyrins and Pyrrole-Modified Porphyrins.

    PubMed

    Rhoda, Hannah M; Akhigbe, Joshua; Ogikubo, Junichi; Sabin, Jared R; Ziegler, Christopher J; Brückner, Christian; Nemykin, Victor N

    2016-07-28

    A large set of free-base and transition-metal 5,10,15,20-tetraphenyl-substituted chlorins, bacteriochlorins, and isobacteriochlorins and their pyrrole-modified analogues were investigated by combined UV-visible spectroscopy, magnetic circular dichroism (MCD), density functional theory (DFT), and time-dependent DFT (TDDFT) approaches and their spectral characteristics were compared to those of the parent compounds, free-base tetraphenylporphyrin 1H2 and chlorin 2H2. It was shown that the nature of the pyrroline substituents in the chlorin derivatives dictates their specific UV-vis and MCD spectroscopic signatures. In all hydroporphyrin-like cases, MCD spectroscopy suggests that the ΔHOMO is smaller than the ΔLUMO for the macrocycle-centered frontier molecular orbitals. DFT and TDDFT calculations were able to explain the large broadening of the UV-vis and MCD spectra of the chlorin diones and their derivatives compared to the other hydroporphyrins and hydroporphyrin analogues. This study contributes to the further understanding of the electronic effects of replacing a pyrrole in porphyrins by pyrrolines or other five-membered heterocycles (oxazoles and imidazoles). PMID:27400337

  18. Pyrrole-hyaluronic acid conjugates for decreasing cell binding to metals and conducting polymers

    PubMed Central

    Lee, Jae Young; Schmidt, Christine E.

    2010-01-01

    Surface modification of electrically conductive biomaterials has been studied to improve biocompatibility for a number of applications, such as implantable sensors and microelectrode arrays. In this study, we electrochemically coated electrodes with biocompatible and non-cell adhesive hyaluronic acid (HA) to reduce cellular adhesion for potential use in neural prostheses. To this end, pyrrole-conjugated hyaluronic acid (PyHA) was synthesized and employed for electrochemical coating of platinum, indium-tin-oxide, and polystyrene sulfonate-doped polypyrrole electrodes. This PyHA conjugate consists of (1) a pyrrole moiety that allows the compound to be electrochemically deposited onto a conductive substrate and (2) non-adhesive HA to minimize cell adhesion and to potentially decrease inflammatory tissue responses. Our characterization results showed the presence of a hydrophilic p(PyHA) layer on the modified electrode, and impedance measurements revealed impedance that was statistically the same as the unmodified electrode. We found that the p(PyHA)-coated electrodes minimized adhesion and migration of fibroblasts and astrocytes for a minimum of up to 3 months. Also, the coating was stable in physiological solution for 3 months and also stable against enzymatic degradation by hyaluronidase. These studies suggest that this p(PyHA)-coating has the potential to be used to mask conducting electrodes from adverse glial responses that occur upon implantation. In addition, electrochemical coating with PyHA can be potentially extended for the surface modification of other metallic and conducting substances such as stents and biosensors. PMID:20558330

  19. A comparative study of the aromaticity of pyrrole, furan, thiophene, and their aza-derivatives.

    PubMed

    Najmidin, Kalbinur; Kerim, Ablikim; Abdirishit, Paruza; Kalam, Horigul; Tawar, Tursungul

    2013-09-01

    The relative aromaticity of pyrrole, furan, thiophene, and their aza-derivatives has been examined using TRE (topological resonance energy), MRE (magnetic resonance energy), ring current (RC), and ring current diamagnetic susceptibility (χG) methods. The results obtained were compared with results obtained by others who used the energetic method ASE (aromatic stabilization energy), the geometric method HOMA (harmonic oscillator model of aromaticity), and the magnetic method NICS(1) (nucleus-independent chemical shift). The impact of nitrogen atoms on the aromaticity of the aza-derivatives of pyrrole, furan, and thiophene is discussed. An excellent correlation was found between the energetic (TRE, MRE) and magnetic (RC and χG) criteria of aromaticity for all compounds. It was expected that inclusion of a heteroatom would decrease the aromaticity relative to the cyclopentadienyl anion. Our results show that the type of the first heteroatom, which donates two electrons to the system, as well as the number of nitrogen atoms and their positions in the molecule have a strong effect on aromaticity. In general, aromaticity is enhanced when the nitrogen atom is adjacent to the first heteroatom. The magnitude of aromaticity is related closely with the uniformity of distribution of π-electrons in the molecule. PMID:23716174

  20. Experimental Charge Density Studies of Disordered N-Phenylpyrrole and N-(4-Fluorophenyl)pyrrole

    NASA Astrophysics Data System (ADS)

    Meindl, Kathrin; Henn, Julian; Kocher, Nikolaus; Leusser, Dirk; Zachariasse, Klaas A.; Sheldrick, George M.; Koritsanszky, Tibor; Stalke, Dietmar

    2009-08-01

    The static electron densities of the title compounds were extracted from high-resolution X-ray diffraction data using the nucleus-centered finite multipole expansion technique. The interpretation of the data collected for the N-phenylpyrrole crystal revealed a static disorder that could be successfully resolved within the aspherical-atom formalism. The local and integrated topological properties of the density obtained via a constrained multipole refinement are in statistical agreement with those calculated at the B3LYP/cc-pVTZ level of theory for the isolated molecule and for those derived from the experimental density of the para-fluorinated derivative N-(4-fluorophenyl)pyrrole. The topological analysis of the densities indicates neither pyramidal character of the pyrrole N-atom nor a quinoidal structure of the phenyl rings in either molecule. The fluorine substitution appears to have only a minor effect on the density of the remaining constituents but it results in markedly different features of the electrostatic potential of the two compounds. The consistency of the multipole refinement is validated by residual density analysis.

  1. Dynamics starting at a conical intersection: Application to the photochemistry of pyrrole

    SciTech Connect

    Sellner, Bernhard; Barbatti, Mario; Lischka, Hans

    2009-07-14

    The photochemical ring opening process in pyrrole has been investigated by performing classical on-the-fly dynamics using the multiconfiguration self-consistent field method for the computation of energies and energy gradients. As starting point for the dynamics the conical intersection corresponding to the ring-puckered ring-opened structure, determined previously [Barbatti et al., J. Chem. Phys. 125, 164323 (2006)], has been chosen. Two sets of initial conditions for the nuclear velocities were constructed: (i) nuclear velocities in the branching (g,h) plane of the conical intersection and (ii) statistical distribution for all atoms. Both sets of initial conditions show very similar results. Reactive trajectories are only found in a very limited sector in the (g,h) plane and reaction products are very similar. Within the simulation time of 1 ps, ring opening of pyrrole to the biradical NH=CH-CH-CH=CH chain followed by ring closure to a substituted cyclopropene structure (NH=CH-C{sub 3}H{sub 3}) is observed. The computed structural data correlate well with the experimentally observed dissociation products.

  2. The Breaking and Mending of meso-Tetraarylporphyrins: Transmuting the Pyrrolic Building Blocks.

    PubMed

    Brückner, Christian

    2016-06-21

    Naturally occurring porphyrins and hydroporphyrins vary with respect to their ring substituents and oxidation states, but their tetrapyrrolic frameworks remain fully preserved across all kingdoms of life; there are no naturally occurring porphyrin-like macrocycles known that contain nonpyrrolic building blocks. However, the study of porphyrin analogues in which one or two pyrroles were replaced with nonpyrrolic building blocks might shed light on the correlation between structural modulation and ground and excited state optical properties of the "pigments of life", unlocking their mechanisms of function. Also, porphyrinoids with strong absorbance and emission spectra in the NIR are sought after in technical (e.g., light-harvesting) and biomedical (e.g., imaging and photochemotherapy) applications. These porphyrin analogues, the so-called pyrrole-modified porphyrins (PMPs), are synthetically accessible using total syntheses. Alternatively-and most handily-they can also be formed by conversion of synthetic porphyrins. Guided by older reports of the fortuitous modifications of porphyrins into PMPs, our research program generalized the so-dubbed "Breaking and Mending of Porphyrins" approach toward PMPs. This method to convert a pyrrole in meso-tetraarylporphyrins to a nonpyrrolic building block with high precision relies on a number of distinct steps. Step 1: The porphyrin is functionalized in a way that activates one or two peripheral double bonds toward breakage; in all cases surveyed here, this step is an osmium tetroxide-mediated dihydroxylation to generate dihydroxychlorin and tetrahydroxybacteriochlorins. Step 2: The activated, dihydroxylated β,β'-bond is "broken". Step 3: The functional groups resulting from the ring-cleavage reactions are utilized in subsequent "mending" steps to form the PMPs, that themselves may be subject to further modifications, Step 4. Thus, PMPs in which a pyrrole was degraded to an imine linkage, contracted to a four-membered ring, or

  3. A Guided Inquiry Experiment for the Measurement of Activation Energies in the Biophysical Chemistry Laboratory: Decarboxylation of Pyrrole-2-Carboxylate

    ERIC Educational Resources Information Center

    Hutchinson, Kelly M.; Bretz, Stacey Lowery; Mettee, Howard D.; Smiley, Jeffrey A.

    2005-01-01

    A laboratory experiment for undergraduate biophysical chemistry is described, in which the acid concentration and temperature dependences of the decarboxylation of pyrrole-2-carboxylate are measured using a continuous ultraviolet (UV) spectrophotometric assay. Data collection and analysis are structured using principles of guided inquiry. Data…

  4. Assessment of conformational, spectral, antimicrobial activity, chemical reactivity and NLO application of Pyrrole-2,5-dicarboxaldehyde bis(oxaloyldihydrazone)

    NASA Astrophysics Data System (ADS)

    Rawat, Poonam; Singh, R. N.

    2015-04-01

    An orange colored pyrrole dihydrazone: Pyrrole-2,5-dicarboxaldehyde bis(oxaloyldihydrazone) (PDBO) has been synthesized by reaction of oxalic acid dihydrazide with 2,5 diformyl-1H-pyrrole and has been characterized by spectroscopic analysis (1H, 13C NMR, UV-visible, FT-IR and DART Mass). The properties of the compound has been evaluated using B3LYP functional and 6-31G(d,p)/6-311+G(d,p) basis set. The symmetric (3319, 3320 cm-1) and asymmetric (3389, 3382 cm-1) stretching wave number confirm free NH2 groups in PDBO. NBO analysis shows, inter/intra molecular interactions within the molecule. Topological parameters have been analyzed by QTAIM theory and provide the existence of intramolecular hydrogen bonding (N-H⋯O). The local reactivity descriptors analyses determine the reactive sites within molecule. The calculated first hyperpolarizability value (β0 = 23.83 × 10-30 esu) of pyrrole dihydrazone shows its suitability for non-linear optical (NLO) response. The preliminary bioassay suggested that the PDBO exhibits relatively good antibacterial and fungicidal activity against Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus, Streptococcus pyogenes, Candida albicans, Aspergillus niger. The local reactivity descriptors - Fukui functions (fk+, fk-), local softnesses (sk+, sk-) and electrophilicity indices (ωk+, ωk-) analyses have been used to determine the reactive sites within molecule.

  5. Nano-copper catalysed highly regioselective synthesis of 2,4-disubstituted pyrroles from terminal alkynes and isocyanides.

    PubMed

    Tiwari, Dipak Kumar; Pogula, Jaya; Sridhar, B; Tiwari, Dharmendra Kumar; Likhar, Pravin R

    2015-09-14

    Nano-copper(0) stabilized on alumina prepared from Cu-Al hydrotalcite has been reported for completely regioselective synthesis of 2,4-disubstituted pyrroles from unactivated terminal aromatic/aliphatic alkynes and isocyanides. The reaction is operationally simple, involves ligand-free inexpensive nano-copper, and affords products in high yields. PMID:26226177

  6. Assessment of conformational, spectral, antimicrobial activity, chemical reactivity and NLO application of Pyrrole-2,5-dicarboxaldehyde bis(oxaloyldihydrazone).

    PubMed

    Rawat, Poonam; Singh, R N

    2015-04-01

    An orange colored pyrrole dihydrazone: Pyrrole-2,5-dicarboxaldehyde bis(oxaloyldihydrazone) (PDBO) has been synthesized by reaction of oxalic acid dihydrazide with 2,5 diformyl-1H-pyrrole and has been characterized by spectroscopic analysis (1H, 13C NMR, UV-visible, FT-IR and DART Mass). The properties of the compound has been evaluated using B3LYP functional and 6-31G(d,p)/6-311+G(d,p) basis set. The symmetric (3319, 3320 cm(-1)) and asymmetric (3389, 3382 cm(-1)) stretching wave number confirm free NH2 groups in PDBO. NBO analysis shows, inter/intra molecular interactions within the molecule. Topological parameters have been analyzed by QTAIM theory and provide the existence of intramolecular hydrogen bonding (N-H⋯O). The local reactivity descriptors analyses determine the reactive sites within molecule. The calculated first hyperpolarizability value (β0=23.83×10(-30) esu) of pyrrole dihydrazone shows its suitability for non-linear optical (NLO) response. The preliminary bioassay suggested that the PDBO exhibits relatively good antibacterial and fungicidal activity against Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus, Streptococcus pyogenes, Candida albicans, Aspergillus niger. The local reactivity descriptors--Fukui functions (fk+, fk-), local softnesses (sk+, sk-) and electrophilicity indices (ωk+, ωk-) analyses have been used to determine the reactive sites within molecule. PMID:25615679

  7. Sulfur-containing hetero-calix[4]pyrroles as mercury(II) cation-selective receptors: thermodynamic aspects.

    PubMed

    de Namor, Angela F Danil; Abbas, Ismail

    2007-05-31

    Two sulfur-containing hybrid calix[4]pyrrole derivatives (III and IV) have been synthesized and fully characterized. Several analytical techniques (1H NMR, conductance measurements, UV-vis spectrophotometry, titration potentiometry, and titration calorimetry) have been used to assess the interaction between these hybrid calixpyrrole receptors and metal cations in acetonitrile and dimethylsulfoxide. The partition constants of calix[4]pyrrole, I, II, and IV in the acetonitrile-hexane solvent system and the solubilities of the ligands in various solvents at 298.15 K were determined. 1H NMR measurements reveal the sites of interaction of calixpyrrole ligands with metal cations in CD3CN. Conductance and UV-vis spectrophotometric measurements were performed to establish the composition of mercury(II) calixpyrrole complexes in acetonitrile at 298.15 K. Titration calorimetry was used to quantitatively assess Hg(II)-calixpyrrole interactions. Thus the thermodynamics of complexation of calixpyrrole ligands with the mercury(II) cation in acetonitrile at 298.15 K are reported. Potentiometric titrations were also used to establish the stepwise stability constants for the complexation of calix[3]thieno[1]pyrrole with the Hg(II) cation in acetonitrile at 298.15 K. The results show that replacement of one or more pyrrole units by thiophene rings in calix[4]pyrrole has tuned significantly the discrimination ability of these ligands between anions and enables the produced hybrid calixpyrroles to bind selectively with Hg(II) in acetonitrile. No interaction was observed between these ligands and other metal cations in acetonitrile. PMID:17477564

  8. Ethynyl-linked (pyreno)pyrrole-naphthyridine and aniline-naphthyridine molecules as fluorescent sensors of guanine via multiple hydrogen bondings.

    PubMed

    Lu, Shao-Hung; Selvi, Srinivasan; Fang, Jim-Min

    2007-01-01

    New fluorescent molecular sensors for 9-alkylguanines were constructed by conjugation of 2-acetamido-1,8-naphthyridine with N-Boc-pyrrole, N-Boc-pyreno[2,1-b]pyrrole, or acetanilide moieties via an ethynyl bridge. In combination with the triple hydrogen-bonding motif of 2-acetamidonaphthyridine toward alkylguanine, an additional binding site was provided by the substituent properly located on the pyrrole or aniline ring to enhance the affinity of these receptor molecules. Besides the ESI-MS analyses, the binding events were readily monitored by the absorption and fluorescence changes in the visible region. PMID:17194089

  9. Depopulation of Single-Phthalocyanine Molecular Orbitals upon Pyrrolic-Hydrogen Abstraction on Graphene.

    PubMed

    Néel, Nicolas; Lattelais, Marie; Bocquet, Marie-Laure; Kröger, Jörg

    2016-02-23

    Single-molecule chemistry with a scanning tunneling microscope has preponderantly been performed on metal surfaces. The molecule-metal hybridization, however, is often detrimental to genuine molecular properties and obscures their changes upon chemical reactions. We used graphene on Ir(111) to reduce the coupling between Ir(111) and adsorbed phthalocyanine molecules. By local electron injection from the tip of a scanning tunneling microscope the two pyrrolic H atoms were removed from single phthalocyanines. The detachment of the H atom pair induced a strong modification of the molecular electronic structure, albeit with no change in the adsorption geometry. Spectra and maps of the differential conductance combined with density functional calculations unveiled the entire depopulation of the highest occupied molecular orbital upon H abstraction. Occupied π states of intact molecules are proposed to be emptied via intramolecular electron transfer to dangling σ states of H-free N atoms. PMID:26812093

  10. Pyrrolo-[3,2-b]pyrroles for Photochromic Analysis of Halocarbons.

    PubMed

    Wu, Jia-Ying; Yu, Cheng-Han; Wen, Jung-Jung; Chang, Chiou-Ling; Leung, Man-kit

    2016-01-19

    Dramatic photochromic-change of 2,5-bis(triphenylamine)-substituted N,N'-diphenylpyrrolo-[3,2-b]pyrrole (1) with halocarbons provides an effective route for halocarbon analysis with the naked eye. The visual detection range can reach as low as 10(-4) ∼ 10(-5) M (1-10 ppm) in CH3CN. This method can also be applied for detection of CHCl3 in water. Fabrication of a disposable paper test cartridge along with using a camera flash as the light source allows on-site halocarbon detection in seconds. Quantitative analysis for CHCl3 and CH2Cl2 have also been demonstrated. PMID:26674846

  11. Telomere Visualization in Tissue Sections using Pyrrole-Imidazole Polyamide Probes.

    PubMed

    Sasaki, Asuka; Ide, Satoru; Kawamoto, Yusuke; Bando, Toshikazu; Murata, Yukinori; Shimura, Mari; Yamada, Kazuhiko; Hirata, Akiyoshi; Nokihara, Kiyoshi; Hirata, Tatsumi; Sugiyama, Hiroshi; Maeshima, Kazuhiro

    2016-01-01

    Pyrrole-Imidazole (PI) polyamides bind to specific DNA sequences in the minor groove with high affinity. Specific DNA labeling by PI polyamides does not require DNA denaturation with harsh treatments of heat and formamide and has the advantages of rapid and less disruptive processing. Previously, we developed tandem hairpin PI polyamide probes (TH59 series), which label telomeres in cultured cell lines more efficiently than conventional methods, such as fluorescence in situ hybridization (FISH). Here, we demonstrate that a TH59 derivative, HPTH59-b, along with immunostaining for specifying cell types in the tissues, visualizes telomeres in mouse and human tissue sections. Quantitative measurements of telomere length with single-cell resolution suggested shorter telomeres in the proliferating cell fractions of tumor than in non-tumor tissues. Thus, PI polyamides are a promising alternative for telomere labeling in clinical research, as well as in cell biology. PMID:27380936

  12. State-specific tunneling lifetimes from classical trajectories: H-atom dissociation in electronically excited pyrrole

    NASA Astrophysics Data System (ADS)

    Xie, Weiwei; Domcke, Wolfgang; Farantos, Stavros C.; Grebenshchikov, Sergy Yu.

    2016-03-01

    A trajectory method of calculating tunneling probabilities from phase integrals along straight line tunneling paths, originally suggested by Makri and Miller [J. Chem. Phys. 91, 4026 (1989)] and recently implemented by Truhlar and co-workers [Chem. Sci. 5, 2091 (2014)], is tested for one- and two-dimensional ab initio based potentials describing hydrogen dissociation in the 1B1 excited electronic state of pyrrole. The primary observables are the tunneling rates in a progression of bending vibrational states lying below the dissociation barrier and their isotope dependences. Several initial ensembles of classical trajectories have been considered, corresponding to the quasiclassical and the quantum mechanical samplings of the initial conditions. It is found that the sampling based on the fixed energy Wigner density gives the best agreement with the quantum mechanical dissociation rates.

  13. Crystal structure of 1-benzyl-4-formyl-1H-pyrrole-3-carb-oxamide.

    PubMed

    Zhong, Qi-Di; Hu, Sheng-Quan; Yan, Hong

    2016-02-01

    In the title compound, C13H12N2O2 (I), the mean planes of the pyrrole and benzyl rings are approximately perpendicular, forming a dihedral angle of 87.07 (4) °. There is an intra-molecular N-H⋯O hydrogen bond forming an S(7) ring motif. In the crystal, mol-ecules are linked via a pair of N-H⋯O hydrogen bonds forming inversion dimers. C-H⋯O hydrogen bonds link the dimers into chains along direction [10-1]. The chains are further linked by weak C-H⋯π inter-actions forming layers parallel to the ac plane. PMID:26958371

  14. Indo Mo calculations of the electronic structures of pyrrole, imidazole, and derivatives

    NASA Astrophysics Data System (ADS)

    Pachler, Klaus G. R.; Pachter, Ruth

    INDO MO calculations on a series of N-substituted pyrroles and imidazoles have been analysed for substituent effects. Some of the basic characteristics of the σ I and or parameters are reflected in the calculated electron densities of the compounds studied. For example, good correlations are obtained between Δ qσN(1)/ΣΔ qσ parameters and σ I for the —R substituted compounds, as well as between ΣΔ qπ values and σ Ro for the +R derivatives. The +R substituents lead to an increased localization of the π-bonds, whereas —R substituted derivatives show an increased delocalization, i.e., the π-bond orders across C(2)-C(3) [or C(2)-N(3)] and C(4)-C(5) decrease and those across other bonds in the ring increase.

  15. Novel composite materials synthesized by the high-temperature interaction of pyrrole with layered oxide matrices

    NASA Astrophysics Data System (ADS)

    Pavel, Alexandru Cezar

    The initial goal of the research presented herein was to develop the very first synthetic metal---high-temperature superconductor ceramic composite material, in the specific form of a polypyrrole---Bi2Sr2CaCu 2O8+delta nanocomposite. In the course of scientific investigation, this scope was broadened to encompass structurally and compositionally similar layered bismuthates and simpler layered oxides. The latter substrates were prepared through novel experimental procedures that enhanced the chance of yielding nanostructured morphologies. The designed novel synthesis approaches yielded a harvest of interesting results that may be further developed upon their dissemination in the scientific community. High-temperature interaction of pyrrole with molybdenum trioxide substrates with different crystalline phases and morphologies led to the formation of the first members of a new class of heterogeneous microcomposites characterized by incomplete occupancy by the metal oxide core of the volume encapsulated by the rigid, amorphous permeable polymeric membrane that reproduces the volume of the initial grain of precursor substrate. The method may be applied for various heterogeneous catalyst substrates for the precise determination of the catalytically active crystallographic planes. In a different project, room-temperature, templateless impregnation of molybdenum trioxide substrates with different crystalline phases and morphologies by a large excess of silver (I) cations led to the formation of 1-D nanostructured novel Ag-Mo-O ternary phase in what may be the simplest experimental procedure available to date that has yielded a 1-D nanostructure, regardless the nature of the constituent material. Interaction of this novel ternary phase with pyrrole vapors at high reaction temperatures led to heterogeneous nanostructured composites that exhibited a silver nanorod core. Nanoscrolls of vanadium pentoxide xerogel were synthesized through a novel, facile reflux-based method that

  16. Infrared spectroscopy of pyrrole-2-carboxaldehyde and its dimer: A planar β-sheet peptide model?

    NASA Astrophysics Data System (ADS)

    Rice, Corey A.; Dauster, Ingo; Suhm, Martin A.

    2007-04-01

    Intermolecular interactions relevant for antiparallel β-sheet formation between peptide strands are studied by Fourier transform infrared spectroscopy of the low temperature, vacuum-isolated model compound pyrrole-2-carboxaldehyde and its dimer in the N-H and C O stretching range. Comparison to quantum chemical predictions shows that even for some triple-zeta quality basis sets, hybrid density functionals and Møller-Plesset perturbation calculations fail to provide a consistent and fully satisfactory description of hydrogen bond induced frequency shifts and intensity ratios in the double-harmonic approximation. The latter approach even shows problems in reproducing the planar structure of the dimer and the correct sign of the C O stretching shift for standard basis sets. The effect of matrix isolation is modeled by condensing layers of Ar atoms on the isolated monomer and dimer. The dimer structure is discussed in the context of the peptide β-sheet motif.

  17. Infrared spectroscopy of pyrrole-2-carboxaldehyde and its dimer: a planar beta-sheet peptide model?

    PubMed

    Rice, Corey A; Dauster, Ingo; Suhm, Martin A

    2007-04-01

    Intermolecular interactions relevant for antiparallel beta-sheet formation between peptide strands are studied by Fourier transform infrared spectroscopy of the low temperature, vacuum-isolated model compound pyrrole-2-carboxaldehyde and its dimer in the N-H and C=O stretching range. Comparison to quantum chemical predictions shows that even for some triple-zeta quality basis sets, hybrid density functionals and Møller-Plesset perturbation calculations fail to provide a consistent and fully satisfactory description of hydrogen bond induced frequency shifts and intensity ratios in the double-harmonic approximation. The latter approach even shows problems in reproducing the planar structure of the dimer and the correct sign of the C=O stretching shift for standard basis sets. The effect of matrix isolation is modeled by condensing layers of Ar atoms on the isolated monomer and dimer. The dimer structure is discussed in the context of the peptide beta-sheet motif. PMID:17430038

  18. A Practical Route to Substituted 7-Aminoindoles from Pyrrole-3-carboxaldehydes

    PubMed Central

    2015-01-01

    Among privileged structures, indoles occupy a central place in medicinal chemistry and alkaloid research. Here we report a flexible and efficient conversion of pyrrole-3-carboxaldehydes to substituted 7-amino-5-cyanoindoles. Phosphine addition to fumaronitrile proceeds with prototropic rearrangement of the initially formed zwitterion to the thermodynamically favored phosphonium ylide, which is poised for in situ Wittig olefination. The predominantly E-alkene product positions the allylic nitrile for facile intramolecular Hoeben–Hoesch reaction in the presence of BF3·OEt2. Syntheses of 2,5- and 3,5-disubstituted 7-aminoindoles are illustrated. Additionally, dianion alkylation of the allylic nitrile is demonstrated to furnish, after cyclization, 5,6-disubstituted 7-aminoindoles to further exemplify this scalable and high-yielding method. PMID:25479249

  19. Lack of effect of deferoxamine, dimethyl sulfoxide, and catalase on monocrotaline pyrrole pulmonary injury

    SciTech Connect

    Bruner, L.H.; Johnson, K.; Carpenter, L.J.; Roth, R.A.

    1987-01-01

    Monocrotaline pyrrole (MCTP) is a reactive metabolite of the pyrrolizidine alkaloid monocrotaline. MCTP given intravenously to rats causes pulmonary hypertension and right ventricular hypertrophy. Lesions in lungs after MCTP treatment contain macrophages and neutrophils, which may contribute to the damage by generation of reactive oxygen metabolites. Rats were treated with MCTP and agents known to protect against oxygen radical-mediated damage in acute models of neutrophil-dependent lung injury. Rats received MCTP and deferoxamine mesylate (DF), dimethyl sulfoxide (DMSO), or polyethylene glycol-coupled catalase (PEG-CAT). MCTP/vehicle-treated controls developed lung injury manifested as increased lung weight, release of lactate dehydrogenase into the airway, and sequestration of SVI-labeled bovine serum albumin in the lungs. Cotreatment of rats with DF, DMSO, or PEG-CAT did not protect against the injury due to MCTP. These results suggest that toxic oxygen metabolites do not play an important role in the pathogenesis of MCTP-induced pulmonary injury.

  20. Quantum chemical studies of the pyrrole-water and pyridine-water complexes

    NASA Astrophysics Data System (ADS)

    Martoprawiro, Muhamad A.; Bacskay, George B.

    An ab initio quantum chemical study of the hydrogen bonded binary complexes pyrrole-water and pyridine-water is reported. The calculations were performed largely at the MP2 level of theory using basis sets of double-zeta-plus polarization functions quality and focus on properties of the complexes such as molecular geometries, energies, harmonic vibrational frequencies, dipole moments and 14N nuclear quadrupole coupling constants. Where possible, the results of the calculations are compared with experimental data. In addition, the interaction potentials are studied in some detail, specifically with regard to basis set superposition and its effect on geometries, intermolecular vibrational frequencies and binding energies. The nature of interaction, i.e., the importance of electrostatic, Pauli repulsion, polarization, charge transfer and dispersion contributions to the hydrogen bond energies, as obtained in constrained spatial orbital variation analyses, is also discussed.

  1. Oxygen Reduction Reaction on Cobalt--(6)Pyrrole Cluster: Density Functional Theory Study

    NASA Astrophysics Data System (ADS)

    Saputro, Adhitya G.; Rusydi, Febdian; Kasai, Hideaki; Dipojono, Hermawan K.

    2012-03-01

    We investigate the potential energy surface profile for various water formation reaction schemes on an unsupported cobalt--(6)pyrrole [Co--(6)Ppy] cluster in the vacuum state by density functional theory (DFT) calculations. We find that in the Co--(6)Ppy cluster, the formation of H2O2 is energetically not favorable. Instead of forming H2O2ad, the \\text{HO\\text{2ad} + H reaction forms 2OHad or \\text{O\\text{ad} + H2O immediately. The adsorption of H2O2 on the Co--(6)Ppy cluster is possible only if the H2O2 molecule comes from or forms outside of the cluster. The formation of two OH molecules instead of H2O2 on the Co--(6)Ppy cluster suggests that the oxygen reduction reaction (ORR) mechanism on the unsupported Co--(6)Ppy cluster in the vacuum state prefers the direct four-electron reduction to water.

  2. One-Pot Aminoethylation of Indoles/Pyrroles with Alkynes and Sulfonyl Azides.

    PubMed

    Rajasekar, Shanmugam; Yadagiri, Dongari; Anbarasan, Pazhamalai

    2015-11-16

    A general and efficient one-pot aminoethylation of substituted indoles/pyrroles was accomplished for the synthesis of various tryptamine derivatives employing a combination of alkynes and sulfonyl azides as readily accessible aminoethylating agents. The reaction features a successful integration of copper-catalyzed alkyne and azide cycloaddition to N-sulfonyl-1,2,3-triazole, rhodium-catalyzed selective insertion of α-iminocarbenes onto the C3-H bond of indoles, and reduction of the resultant enamides to tryptamine derivatives employing either NaCNBH3 or palladium catalyst, in one-pot. The reaction also showed excellent functional-group tolerance and allowed the synthesis of various substituted tryptamines in good to excellent yield. This transformation constitutes a one-pot formal regioselective functionalization of terminal alkynes. Utility of the synthesized tryptamine was further demonstrated in the synthesis of dihydro-β-carboline and tryptoline. PMID:26443500

  3. Tumor Repression of VCaP Xenografts by a Pyrrole-Imidazole Polyamide

    PubMed Central

    Hargrove, Amanda E.; Martinez, Thomas F.; Hare, Alissa A.; Kurmis, Alexis A.; Phillips, John W.; Sud, Sudha; Pienta, Kenneth J; Dervan, Peter B.

    2015-01-01

    Pyrrole-imidazole (Py-Im) polyamides are high affinity DNA-binding small molecules that can inhibit protein-DNA interactions. In VCaP cells, a human prostate cancer cell line overexpressing both AR and the TMPRSS2-ERG gene fusion, an androgen response element (ARE)-targeted Py-Im polyamide significantly downregulates AR driven gene expression. Polyamide exposure to VCaP cells reduced proliferation without causing DNA damage. Py-Im polyamide treatment also reduced tumor growth in a VCaP mouse xenograft model. In addition to the effects on AR regulated transcription, RNA-seq analysis revealed inhibition of topoisomerase-DNA binding as a potential mechanism that contributes to the antitumor effects of polyamides in cell culture and in xenografts. These studies support the therapeutic potential of Py-Im polyamides to target multiple aspects of transcriptional regulation in prostate cancers without genotoxic stress. PMID:26571387

  4. Supramolecular biosensors based on electropolymerised pyrrole-cyclodextrin modified surfaces for antibody detection.

    PubMed

    Wajs, Ewelina; Fernández, Núria; Fragoso, Alex

    2016-06-01

    The self-assembly of an adamantane-appended polymer bearing an antigen fragment on a polypyrrole-cyclodextrin modified surface provides a highly sensitive immunosensor with low limits of detection for celiac disease related targets. The pyrrole-carboxylic acid films were formed on the surface of gold electrodes by electropolymerisation and followed by covalent attachment of cyclodextrin units. Surface plasmon resonance measurements confirmed the role of the host/guest interactions between adamantane moieties and β-cyclodextrin hosts in the formation of the supramolecular sensor interface. Furthermore, this novel electrochemical supramolecular platform was effective in the amperometric detection of anti-gliadin antibodies in spiked serum samples with very good signal recovery. PMID:27097527

  5. Catalytic formal [2+2+1] synthesis of pyrroles from alkynes and diazenes via TiII/TiIV redox catalysis

    NASA Astrophysics Data System (ADS)

    Gilbert, Zachary W.; Hue, Ryan J.; Tonks, Ian A.

    2016-01-01

    Pyrroles are structurally important heterocycles. However, the synthesis of polysubstituted pyrroles is often challenging. Here, we report a multicomponent, Ti-catalysed formal [2+2+1] reaction of alkynes and diazenes for the oxidative synthesis of penta- and trisubstituted pyrroles: a nitrenoid analogue to classical Pauson-Khand-type syntheses of cyclopentenones. Given the scarcity of early transition-metal redox catalysis, preliminary mechanistic studies are presented. Initial stoichiometric and kinetic studies indicate that the mechanism of this reaction proceeds through a formally TiII/TiIV redox catalytic cycle, in which an azatitanacyclobutene intermediate, resulting from [2+2] alkyne + Ti imido coupling, undergoes a second alkyne insertion followed by reductive elimination to yield pyrrole and a TiII species. The key component for catalytic turnover is the reoxidation of the TiII species to a TiIV imido via the disproportionation of an η2-diazene-TiII complex.

  6. Organocatalytic asymmetric Henry reaction of 1H-pyrrole-2,3-diones with bifunctional amine-thiourea catalysts bearing multiple hydrogen-bond donors

    PubMed Central

    Zhang, Ming-Liang; Yue, Deng-Feng; Wang, Zhen-Hua; Luo, Yuan; Zhang, Xiao-Mei

    2016-01-01

    Summary For the first time, a catalytic asymmetric Henry reaction of 1H-pyrrole-2,3-diones was achieved with a chiral bifunctional amine-thiourea as a catalyst possessing multiple hydrogen-bond donors. With this developed method, a range of 3-hydroxy-3-nitromethyl-1H-pyrrol-2(3H)-ones bearing quaternary stereocenters were obtained in acceptable yield (up to 75%) and enantioselectivity (up to 73% ee). PMID:26977188

  7. Organocatalytic asymmetric Henry reaction of 1H-pyrrole-2,3-diones with bifunctional amine-thiourea catalysts bearing multiple hydrogen-bond donors.

    PubMed

    Zhang, Ming-Liang; Yue, Deng-Feng; Wang, Zhen-Hua; Luo, Yuan; Xu, Xiao-Ying; Zhang, Xiao-Mei; Yuan, Wei-Cheng

    2016-01-01

    For the first time, a catalytic asymmetric Henry reaction of 1H-pyrrole-2,3-diones was achieved with a chiral bifunctional amine-thiourea as a catalyst possessing multiple hydrogen-bond donors. With this developed method, a range of 3-hydroxy-3-nitromethyl-1H-pyrrol-2(3H)-ones bearing quaternary stereocenters were obtained in acceptable yield (up to 75%) and enantioselectivity (up to 73% ee). PMID:26977188

  8. Highly enantioselective synthesis of beta-heteroaryl-substituted dihydrochalcones through Friedel-Crafts alkylation of indoles and pyrrole.

    PubMed

    Wang, Wentao; Liu, Xiaohua; Cao, Weidi; Wang, Jun; Lin, Lili; Feng, Xiaoming

    2010-02-01

    A highly enantioselective Friedel-Crafts (F-C) alkylation of indoles and pyrrole with chalcone derivatives catalyzed by a chiral N,N'-dioxide-Sc(OTf)(3) complex has been developed that tolerates a wide range of substrates. The reaction proceeds in moderate to excellent yields and high enantioselectivities (85-92 % enantiomeric excess) using 2 mol % (for indole) or 0.5 mol % (for pyrrole) catalyst loading, which showed the potential value of the catalyst system. Meanwhile, a strong positive nonlinear effect was observed. On the basis of the experimental results and previous reports, a possible working model is proposed to explain the origin of the activation and asymmetric induction. PMID:20013964

  9. Both visual and fluorescent sensors for Zn(2+) based on bis(pyrrol-2-yl-methyleneamine) platform.

    PubMed

    Wu, Wei-Na; Mao, Pan-Dong; Jia, Lei; Wang, Yuan; Xu, Zhou-Qing

    2016-09-01

    Two bis(pyrrol-2-yl-methyleneamine) chemo-sensors, 1, 3- and 1, 4-bis[3,4-dimethyl-5-ethyloxy -carbonyl-pyrrol-2-yl-methyleneamine]benzene (H2L(1) and H2L(2), respectively) have been synthesized and characterized, which exhibit high selectivity as off-on fluorescence sensors toward Zn(2+) in CH3CN/H2O (9:1, v/v) solution. The detection limits of both sensors are at the parts per million level. Moreover, the probes H2L(1) and H2L(2) could sense Zn(2+) by "naked eye" with a color change from colorless to yellow, and from yellow to dark yellow, respectively. To test the practical use of the probes, the determination of Zn(2+) in real water samples was also evaluated. PMID:27208758

  10. Ab initio multiple cloning simulations of pyrrole photodissociation: TKER spectra and velocity map imaging

    SciTech Connect

    Makhov, Dmitry V.; Saita, Kenichiro; Martinez, Todd J.; Shalashilin, Dmitrii V.

    2014-12-11

    In this study, we report a detailed computational simulation of the photodissociation of pyrrole using the ab initio Multiple Cloning (AIMC) method implemented within MOLPRO. The efficiency of the AIMC implementation, employing train basis sets, linear approximation for matrix elements, and Ehrenfest configuration cloning, allows us to accumulate significant statistics. We calculate and analyze the total kinetic energy release (TKER) spectrum and Velocity Map Imaging (VMI) of pyrrole and compare the results directly with experimental measurements. Both the TKER spectrum and the structure of the velocity map image (VMI) are well reproduced. Previously, it has been assumed that the isotropic component of the VMI arises from long time statistical dissociation. Instead, our simulations suggest that ultrafast dynamics contributes significantly to both low and high energy portions of the TKER spectrum.

  11. Both visual and fluorescent sensors for Zn2 + based on bis(pyrrol-2-yl-methyleneamine) platform

    NASA Astrophysics Data System (ADS)

    Wu, Wei-Na; Mao, Pan-Dong; Jia, Lei; Wang, Yuan; Xu, Zhou-Qing

    2016-09-01

    Two bis(pyrrol-2-yl-methyleneamine) chemo-sensors, 1, 3- and 1, 4-bis[3,4-dimethyl-5-ethyloxy -carbonyl-pyrrol-2-yl-methyleneamine]benzene (H2L1 and H2L2, respectively) have been synthesized and characterized, which exhibit high selectivity as off-on fluorescence sensors toward Zn2 + in CH3CN/H2O (9:1, v/v) solution. The detection limits of both sensors are at the parts per million level. Moreover, the probes H2L1 and H2L2 could sense Zn2 + by "naked eye" with a color change from colorless to yellow, and from yellow to dark yellow, respectively. To test the practical use of the probes, the determination of Zn2 + in real water samples was also evaluated.

  12. X-ray crystallography and computational studies of a variety of pyrrole derivatives obtained from mesoionic oxazoles and selected chromenones

    NASA Astrophysics Data System (ADS)

    Brancatelli, Giovanna; Bruno, Giuseppe; Nicolò, Francesco; Cordaro, Massimiliano; Grassi, Giovanni; Risitano, Francesco; Scala, Angela

    2011-03-01

    The molecular structure, packing properties, and intermolecular interactions of a series of pyrrole derivatives have been determined by single-crystal X-ray diffraction. They were efficiently synthesized from mesoionic oxazoles and selected chromenones via initial 1,3-dipolar cycloaddition followed by cascade transformations. Compounds 4- 6 are described as three fused rings associated in the crystal lattice through H-bonding interactions. Besides the H-bonding interactions encountered in the crystal packing of 4- 8, a different strong centrosymmetric π-interaction has been found in 8, involving the cyano group and the π-system of aromatic pyrrole ring. A density functional theory (DFT) study was carried out on the supramolecular dimer in order to understand the nature and role of this intermolecular force in driving the molecular packing.

  13. 1H, 13C MAS NMR and GIAO-CPHF calculations of chloramphenicol, thiamphenicol and their pyrrole analogues

    NASA Astrophysics Data System (ADS)

    Żołek, Teresa; Paradowska, Katarzyna; Krajewska, Dorota; Różański, Andrzej; Wawer, Iwona

    2003-02-01

    The 13C CP MAS and 1H MAS NMR and ab initio (GIAO-CPHF) calculations were used to obtain structural information on two known antibiotics: chloramphenicol, and thiamphenicol, and two new analogues: DL- threo-1-(1-methyl-4-nitro-pyrrole-2-yl)-2-dichloroacetamidopropane-1,3-diol and DL- threo-1-(1-methylsulfonylpyrrole-3-yl)-2-dichloroacetamidopropane-1,3-diol.

  14. Direct detection of pyridine formation by the reaction of CH (CD) with pyrrole: a ring expansion reaction

    SciTech Connect

    Soorkia, Satchin; Taatjes, Craig A.; Osborn, David L.; Selby, Talitha M.; Trevitt, Adam J.; Wilson, Kevin R.; Leone, Stephen R.

    2010-03-16

    The reaction of the ground state methylidyne radical CH (X2Pi) with pyrrole (C4H5N) has been studied in a slow flow tube reactor using Multiplexed Photoionization Mass Spectrometry coupled to quasi-continuous tunable VUV synchrotron radiation at room temperature (295 K) and 90 oC (363 K), at 4 Torr (533 Pa). Laser photolysis of bromoform (CHBr3) at 248 nm (KrF excimer laser) is used to produce CH radicals that are free to react with pyrrole molecules in the gaseous mixture. A signal at m/z = 79 (C5H5N) is identified as the product of the reaction and resolved from 79Br atoms, and the result is consistent with CH addition to pyrrole followed by Helimination. The Photoionization Efficiency curve unambiguously identifies m/z = 79 as pyridine. With deuterated methylidyne radicals (CD), the product mass peak is shifted by +1 mass unit, consistent with the formation of C5H4DN and identified as deuterated pyridine (dpyridine). Within detection limits, there is no evidence that the addition intermediate complex undergoes hydrogen scrambling. The results are consistent with a reaction mechanism that proceeds via the direct CH (CD) cycloaddition or insertion into the five-member pyrrole ring, giving rise to ring expansion, followed by H atom elimination from the nitrogen atom in the intermediate to form the resonance stabilized pyridine (d-pyridine) molecule. Implications to interstellar chemistry and planetary atmospheres, in particular Titan, as well as in gas-phase combustion processes, are discussed.

  15. Copper-Catalyzed Coupling of 2-Siloxy-1-alkenes and Diazocarbonyl Compounds: Approach to Multisubstituted Furans, Pyrroles, and Thiophenes.

    PubMed

    Tan, Wei Wen; Yoshikai, Naohiko

    2016-07-01

    We report herein copper(II)-catalyzed cyclization reactions of silyl enol ethers derived from methyl ketones with α-diazo-β-ketoesters or α-diazoketones to afford 2-siloxy-2,3-dihydrofuran derivatives or 2,3,5-trisubstituted furans, respectively, under mild conditions. The former cyclization products serve as versatile 1,4-diketone surrogates, allowing facile preparation of 2,3,5-trisubstituted furans, pyrroles, and thiophenes. PMID:27259097

  16. Mixed β-pyrrole substituted meso-tetraphenylporphyrins and their metal complexes: optical nonlinearity using degenerate four wave mixing technique.

    PubMed

    Kalnoor, Basanth S; Bisht, Prem B; Jena, Kailash C; Velkannan, V; Bhyrappa, P

    2013-08-29

    We have investigated the roles of structural modification and polar effects in the optical nonlinearities of a series of selectively mixed β-pyrrole functionalized tetraphenylporphyrin, MTPP(CHO)(R)2 (R = H, Br, 2-thienyl, phenyl (Ph), phenylethynyl (PE) compounds and their metal (Cu(II), Zn(II)) complexes in toluene. In the present study, we have used phase conjugation geometry of the four wave mixing process to measure the third order nonlinear susceptibility (χ(3)) and the second order hyperpolarizabilty ((γ)) with picosecond laser pulse excitation at 532 nm. An increase in the values of χ(3) and (γ) for electron-withdrawing groups was observed whereas an opposite trend was noticed for the electron-donating groups at the β-pyrrole positions. In the Cu(II) and Zn(II) complexes of substituted free base porphyrins, the distortion of the macrocyclic ring may be responsible for the reduction of the values of χ(3) and (γ). From fluorescence measurements, it has been found that the electron-donating and electron-withdrawing substituted groups at β-pyrrole positions and also the macrocyclic ring distortion of the porphyrin lead to increased radiationless transitions. PMID:23909768

  17. Calix[4]pyrrole derivative: recognition of fluoride and mercury ions and extracting properties of the receptor-based new material.

    PubMed

    de Namor, Angela F Danil; Khalife, Rasha

    2008-12-11

    A calix[4]pyrrole derivative, namely, meso-tetramethyl tetrakis (4-phenoxy methyl ketone) calix[4]pyrrole, 1, was synthesized and structurally (1H NMR) and thermodynamically characterized. The complexing properties of this receptor with a wide variety of anions and cations in dipolar aprotic media (acetonitrile, propylene carbonate, and dimethyl sulfoxide) were investigated through 1H NMR and conductance studies. The former technique was used to assess whether or not complexation occurs and if so to identify the active sites of interaction of 1 with ions. The composition of the complexes was established by conductance measurements. It was found that in dipolar aprotic solvents, 1 interacts only with two polluting ions (fluoride and mercury). The complexation thermodynamics of 1 and these ions in these solvents is reported. The medium effect on the binding process involving the fluoride ion is discussed taking into account the solvation properties of reactants and the product. Complexes of moderate stability are found. Given that this is an important factor to consider for the recycling of the loaded material in extraction processes, 1 was treated with formaldehyde in basic medium leading to the production of a calix[4]pyrrole based material able to extract fluoride and mercury (II) ions from water. Thus the optimum conditions for the extraction of these ions from aqueous solutions were established. The material is easily recyclable using an organic acid. Final conclusions are given. PMID:19053691

  18. Pyrrole Alkaloids with Potential Cancer Chemopreventive Activity Isolated from a Goji Berry-Contaminated Commercial Sample of African Mango

    PubMed Central

    2015-01-01

    Bioassay-guided fractionation of a commercial sample of African mango (Irvingia gabonensis) that was later shown to be contaminated with goji berry (Lycium sp.) led to the isolation of a new pyrrole alkaloid, methyl 2-[2-formyl-5-(hydroxymethyl)-1H-pyrrol-1-yl]propanoate, 1, along with seven known compounds, 2–8. The structures of the isolated compounds were established by analysis of their spectroscopic data. The new compound 1g showed hydroxyl radical-scavenging activity with an ED50 value of 16.7 μM, whereas 4-[formyl-5-(methoxymethyl)-1H-pyrrol-1-yl]butanoic acid (2) was active in both the hydroxyl radical-scavenging (ED50 11.9 μM) and quinone reductase-induction [CD (concentration required to double QR activity) 2.4 μM)] assays used. The isolated compounds were shown to be absent in a taxonomically authenticated African mango sample but present in three separate authentic samples of goji berry (Lycium barbarum) using LC-MS and 1H NMR fingerprinting analysis, including one sample that previously showed inhibitory activity in vivo in a rat esophageal cancer model induced with N-nitrosomethylbenzylamine. Additionally, microscopic features characteristic of goji berry were observed in the commercial African mango sample. PMID:24792835

  19. Identification of the altered pyrrole in the isomeric sulfmyoglobins: hyperfine shift patterns as indicators of ring saturation in ferric chlorins

    SciTech Connect

    Chatfield, M.J.; La Mar, G.N.; Smith, K.M.; Leung, H.K.; Pandey, R.K.

    1988-03-08

    Analysis of the /sup 1/H NMR hyperfine shift patterns of isomeric sulfmyoglobins is carried out in the met-aquo and met-cyano states to determine the site of saturation in each protein. The utility of the patterns for structure elucidation is established by specific deuterium labeling of heme methyls of the terminal base product. On the basis of the know saturation of ring B in this isomer. The methyl resonance of the saturated ring is found to have strongly attenuated contact shift. Thus, the heme methyl contact shift pattern is diagnostic for the saturated pyrrole in the high-spin state. This rationale is then applied to analyze the assigned NMR spectra of the initial and terminal acid sulfmyoglobin products, revealing that the same ring B is saturated in each isomer. In contrast, the heme methyl contact shift pattern in low-spin ferric complexes reveals that the methyls both on the affected pyrrole and on the trans pyrrole are influenced similarly on sulfmyoglobin formation, precluding the use of this methyl shift pattern as a unique indicator of the site of saturation. Identification of exchangeable proximal histidine resonances for met-aquo sulfmyoglobin complexes with shifts similar to that in native myoglobin dictates inconsequential axial alterations in the sulfmyoglobins, while location of downfield meso proton resonances analogous to those of the native protein demonstrates the retention of the coordinate water in the active site of met-sulfmyoglobin.

  20. Flexible electrochemical capacitors based on polypyrrole/carbon fibers via chemical polymerization of pyrrole vapor

    NASA Astrophysics Data System (ADS)

    Yuan, Wei; Han, Gaoyi; Xiao, Yaoming; Chang, Yunzhen; Liu, Cuixian; Li, Miaoyu; Li, Yanping; Zhang, Ying

    2016-07-01

    Polypyrrole (PPy) has been deposited on the carbon fibers (CFs) via chemical oxidation of monomer vapor strategy, during which FeCl3·6H2O in acetonitrile adsorbed on CFs acts as oxidant to polymerize the pyrrole vapor. The morphologies and capacitive properties of the PPy deposited on CFs (PPy/CFs) are strongly influenced by the concentration of oxidant used in the process. The assembled flexible capacitors by using PPy/CFs as electrodes and LiCl/polyvinyl alcohol as gel electrolyte have been evaluated by cyclic voltammetry, galvanostatic charge/discharge and electrochemical impedance spectroscopy. The results show that the composites of PPy/CFs prepared by using 350 mg mL-1 FeCl3·6H2O as oxidant (PPy/CFs-350) exhibit relatively higher specific capacitance and good rate capability. Compared with PPy/CFs prepared by electrochemical deposition (retaining 5% of the initial capacitance), the PPy/CFs prepared by chemically polymerizing monomer vapor shows excellent stability (retaining 85% of initial capacitance after 5000 cycles). Furthermore, cells fabricated by PPy/CFs show a fairly good performance under various bending states, three cells of PPy/CFs-350 connected in series can light up a light emitting diode with a voltage threshold of about 2.5 V for approximate 10 min after being charged for about 3 min, revealing the potential of the cells' practical applications.

  1. Animal Toxicity of Hairpin Pyrrole-Imidazole Polyamides Varies with the Turn Unit

    PubMed Central

    2013-01-01

    A hairpin pyrrole-imidazole polyamide (1) targeted to the androgen receptor consensus half-site was found to exert antitumor effects against prostate cancer xenografts. A previous animal study showed that 1, which has a chiral amine at the α-position of the γ-aminobutyric acid turn (γ-turn), did not exhibit toxicity at doses less than 10 mg/kg. In the same study, a polyamide with an acetamide at the β-position of the γ-turn resulted in animal morbidity at 2.3 mg/kg. To identify structural motifs that cause animal toxicity, we synthesized polyamides 1–4 with variations at the α- and β-positions in the γ-turn. Weight loss, histopathology, and serum chemistry were analyzed in mice post-treatment. While serum concentration was similar for all four polyamides after injection, dose-limiting liver toxicity was only observed for three polyamides. Polyamide 3, with an α-acetamide, caused no significant evidence of rodent toxicity and retains activity against LNCaP xenografts. PMID:24015881

  2. Ground and excited state vibrations of 2-(2‧-pyridyl)pyrrole

    NASA Astrophysics Data System (ADS)

    Kijak, Michał; Nosenko, Yevgeniy; Singh, Ajay; Thummel, Randolph P.; Brutschy, Bernhard; Waluk, Jacek

    2007-11-01

    2-(2'-pyridyl)pyrrole (PP), a molecule with a weak intramolecular hydrogen bond, reveals excited state intramolecular proton transfer (ESIPT). The photoreaction occurs even for a cold molecule isolated in a supersonic jet. Under such conditions, the ESIPT rate can be enhanced or suppressed by excitation of specific S 1 vibronic levels. Investigations of vibrational structure of PP in S 0 and S 1 states were carried out using FTIR spectroscopy of solutions and matrix-isolated samples, combined with laser induced fluorescence (LIF) excitation, hole-burning, and dispersed fluorescence measurements in supersonic jets. The theoretical analysis included calculations of ground and excited state vibrational patterns. Detailed assignments were proposed for most of the ground state vibrational transitions and for the S 1 modes observed in the LIF and hole-burning spectra. The results show clearly that the phototautomerization is promoted by in-plane vibrations which can increase the strength of the intramolecular hydrogen bond. On the contrary, excitation of out-of-plane vibrations, which weakens the hydrogen bond, leads to a dramatic decrease in the proton transfer rate.

  3. Novel Pt(II) complexes containing pyrrole oxime; synthesis, characterization and DNA binding studies

    NASA Astrophysics Data System (ADS)

    Erdogan, Deniz Altunoz; Özalp-Yaman, Şeniz

    2014-05-01

    Since the discovery of anticancer activity and subsequent clinical success of cisplatin (cis-[PtCl2(NH3)2]), platinum-based compounds have since been widely synthesized and studied as potential chemotherapeutic agents. In this sense, three novel nuclease active Pt(II) complexes with general formula; [Pt(NH3)Cl(L)] (1), [Pt(L)2] (2), and K[PtCl2(L)] (3) in which L is 1-H-pyrrole-2-carbaldehyde oxime were synthesized. Characterization of complexes was performed by elemental analysis, FT-IR, 1H NMR and mass spectroscopy measurements. Interaction of complexes (1-3) with calf thymus deoxyribonucleic acid (ct-DNA) was investigated by using electrochemical, spectroelectrochemical methods and cleavage studies. The hyperchromic change in the electronic absorption spectrum of the Pt(II) complexes indicates an electrostatic interaction between the complexes and ct-DNA. Binding constant values between 4.42 × 103 and 5.09 × 103 M-1 and binding side size values between 2 and 3 base pairs were determined from cyclic voltammetry (CV) and differential pulse voltammetry (DPV) studies.

  4. Designing anthraquinone-pyrrole redox intercalating probes for electrochemical gene detection.

    PubMed

    Lin, Yu-Jen; Wu, Yung-Chao; Mani, Veerappan; Huang, Sheng-Tung; Huang, Chih-Hung; Hu, Yi-Chiuen; Peter Shan, His-Chi

    2016-05-15

    The real-time quantitative electrochemical monitoring of nucleic acid amplification through PCR is a promising renowned methodology to detect pathogenic DNAs. In this work, anthraquinone-pyrrole derivatives based redox intercalating probes (AP probes: AP1, AP2) have been designed, synthesized, characterized and successfully demonstrated in real-time like quantitative PCR. The rationally designed AP probes exhibited excellent DNA binding abilities and electrochemical behaviors. The binding parameters such as binding constant, binding site size and diffusion coefficient were estimated which were comparable to literature reports. Besides, the AP probes are highly stable under PCR thermal conditions and did not inhibit PCR. Therefore, a real-time like quantification of DNA amplification was demonstrated to quantify the initial copy number of target genes. The probe AP2 has excellent ability to detect ~10(3) copies of target tpc DNA with good sensitivity. The AP probes are metal-free, easily synthesizable, non-toxic, thermally stable and feasible for miniaturized PCR chips. PMID:26716423

  5. A concise synthesis of (+)-batzelladine B from simple pyrrole-based starting materials

    NASA Astrophysics Data System (ADS)

    Parr, Brendan T.; Economou, Christos; Herzon, Seth B.

    2015-09-01

    Alkaloids, secondary metabolites that contain basic nitrogen atoms, are some of the most well-known biologically active natural products in chemistry and medicine. Although efficient laboratory synthesis of alkaloids would enable the study and optimization of their biological properties, their preparation is often complicated by the basicity and nucleophilicity of nitrogen, its susceptibility to oxidation, and its ability to alter reaction outcomes in unexpected ways--for example, through stereochemical instability and neighbouring group participation. Efforts to address these issues have led to the invention of a large number of protecting groups that temper the reactivity of nitrogen; however, the use of protecting groups typically introduces additional steps and obstacles into the synthetic route. Alternatively, the use of aromatic nitrogen heterocycles as synthetic precursors can attenuate the reactivity of nitrogen and streamline synthetic strategies. Here we use such an approach to achieve a synthesis of the complex anti-HIV alkaloid (+)-batzelladine B in nine steps (longest linear sequence) from simple pyrrole-based starting materials. The route uses several key transformations that would be challenging or impossible to implement using saturated nitrogen heterocycles and highlights some of the advantages of beginning with aromatic reagents.

  6. Fabrication and electrical characterization of pyrrole-aniline copolymer-based Schottky diodes

    NASA Astrophysics Data System (ADS)

    Sönmezoğlu, S.; Durmuş, C. B.; Taş, R.; Çankaya, G.; Can, M.

    2011-05-01

    In this work, pyrrole-aniline copolymer/p-Si structure has been fabricated by forming a thin organic copolymer film on a p-Si wafer. A good rectifying behavior was seen from the current-voltage (I-V) characteristics. The characteristic parameters of the structure such as barrier height, ideality factor, interface states density and series resistance were determined from the electrical measurements using I-V, Cheung's, and modified Norde's function. The calculated barrier height values from different methods have shown the consistency of the approaches. The obtained ideality factor which is greater than unity refers to the deviation from ideal diode characteristics. This deviation can be attributed to secondary mechanisms, which include interface dipoles due to interface doping or specific interface structure, as well as fabrication-induced defects at the interface. The energy distribution of interface-state density of the copolymer-based structure was determined, and the interface-state density was found to vary from 1.27 × 1016 cm-2 eV-1 in (0.07 - Ev) eV to 2.45 × 1015 cm-2 eV-1 in (0.52 - Ev) eV. Furthermore, these copolymers were characterized with UV-vis, FTIR techniques, and thermal analysis.

  7. The 8-Pyrrole-Benzothiazinones Are Noncovalent Inhibitors of DprE1 from Mycobacterium tuberculosis.

    PubMed

    Makarov, Vadim; Neres, João; Hartkoorn, Ruben C; Ryabova, Olga B; Kazakova, Elena; Šarkan, Michal; Huszár, Stanislav; Piton, Jérémie; Kolly, Gaëlle S; Vocat, Anthony; Conroy, Trent M; Mikušová, Katarína; Cole, Stewart T

    2015-08-01

    8-Nitro-benzothiazinones (BTZs), such as BTZ043 and PBTZ169, inhibit decaprenylphosphoryl-β-d-ribose 2'-oxidase (DprE1) and display nanomolar bactericidal activity against Mycobacterium tuberculosis in vitro. Structure-activity relationship (SAR) studies revealed the 8-nitro group of the BTZ scaffold to be crucial for the mechanism of action, which involves formation of a semimercaptal bond with Cys387 in the active site of DprE1. To date, substitution of the 8-nitro group has led to extensive loss of antimycobacterial activity. Here, we report the synthesis and characterization of the pyrrole-benzothiazinones PyrBTZ01 and PyrBTZ02, non-nitro-benzothiazinones that retain significant antimycobacterial activity, with MICs of 0.16 μg/ml against M. tuberculosis. These compounds inhibit DprE1 with 50% inhibitory concentration (IC50) values of <8 μM and present favorable in vitro absorption-distribution-metabolism-excretion/toxicity (ADME/T) and in vivo pharmacokinetic profiles. The most promising compound, PyrBTZ01, did not show efficacy in a mouse model of acute tuberculosis, suggesting that BTZ-mediated killing through DprE1 inhibition requires a combination of both covalent bond formation and compound potency. PMID:25987616

  8. The 8-Pyrrole-Benzothiazinones Are Noncovalent Inhibitors of DprE1 from Mycobacterium tuberculosis

    PubMed Central

    Makarov, Vadim; Neres, João; Hartkoorn, Ruben C.; Ryabova, Olga B.; Kazakova, Elena; Šarkan, Michal; Huszár, Stanislav; Piton, Jérémie; Kolly, Gaëlle S.; Vocat, Anthony; Conroy, Trent M.; Mikušová, Katarína

    2015-01-01

    8-Nitro-benzothiazinones (BTZs), such as BTZ043 and PBTZ169, inhibit decaprenylphosphoryl-β-d-ribose 2′-oxidase (DprE1) and display nanomolar bactericidal activity against Mycobacterium tuberculosis in vitro. Structure-activity relationship (SAR) studies revealed the 8-nitro group of the BTZ scaffold to be crucial for the mechanism of action, which involves formation of a semimercaptal bond with Cys387 in the active site of DprE1. To date, substitution of the 8-nitro group has led to extensive loss of antimycobacterial activity. Here, we report the synthesis and characterization of the pyrrole-benzothiazinones PyrBTZ01 and PyrBTZ02, non-nitro-benzothiazinones that retain significant antimycobacterial activity, with MICs of 0.16 μg/ml against M. tuberculosis. These compounds inhibit DprE1 with 50% inhibitory concentration (IC50) values of <8 μM and present favorable in vitro absorption-distribution-metabolism-excretion/toxicity (ADME/T) and in vivo pharmacokinetic profiles. The most promising compound, PyrBTZ01, did not show efficacy in a mouse model of acute tuberculosis, suggesting that BTZ-mediated killing through DprE1 inhibition requires a combination of both covalent bond formation and compound potency. PMID:25987616

  9. A concise synthesis of (+)-batzelladine B from simple pyrrole-based starting materials

    PubMed Central

    Parr, Brendan T.; Economou, Christos; Herzon, Seth B.

    2015-01-01

    Alkaloids, secondary metabolites that contain basic nitrogen atoms, are some of the most well-known biologically active natural products in chemistry and medicine1. Although the efficient laboratory syntheses of alkaloids would enable researchers to study and optimize their biological properties,2 the basicity and nucleophilicity of nitrogen, its susceptibility to oxidation, and its ability to alter reaction outcomes in unexpected ways – for example, through stereochemical instability and neighboring group participation – complicates their preparation in the laboratory. Efforts to address these issues have led to the invention of a large number of protecting groups that temper the reactivity of nitrogen3; however, the use of protecting groups typically introduce additional steps and obstacles into the synthetic route. Alternatively, the use of aromatic nitrogen heterocycles as synthetic precursors can attenuate the reactivity of nitrogen and streamline synthetic strategies4. In this manuscript, we use such an approach to achieve a synthesis of the complex anti-HIV alkaloid (+)-batzelladine B in nine steps (longest-linear sequence) from simple pyrrole-based starting materials. The route employs several key transformations that would be challenging or impossible to implement using saturated nitrogen heterocycles and highlights some of the advantages conferred by the use of aromatic starting materials. PMID:26375010

  10. Efficient Synthesis of Peptide and Protein Functionalized Pyrrole-Imidazole Polyamides Using Native Chemical Ligation

    PubMed Central

    Janssen, Brian M. G.; van Ommeren, Sven P. F. I.; Merkx, Maarten

    2015-01-01

    The advancement of DNA-based bionanotechnology requires efficient strategies to functionalize DNA nanostructures in a specific manner with other biomolecules, most importantly peptides and proteins. Common DNA-functionalization methods rely on laborious and covalent conjugation between DNA and proteins or peptides. Pyrrole-imidazole (Py–Im) polyamides, based on natural minor groove DNA-binding small molecules, can bind to DNA in a sequence specific fashion. In this study, we explore the use of Py–Im polyamides for addressing proteins and peptides to DNA in a sequence specific and non-covalent manner. A generic synthetic approach based on native chemical ligation was established that allows efficient conjugation of both peptides and recombinant proteins to Py–Im polyamides. The effect of Py–Im polyamide conjugation on DNA binding was investigated by Surface Plasmon Resonance (SPR). Although the synthesis of different protein-Py–Im-polyamide conjugates was successful, attenuation of DNA affinity was observed, in particular for the protein-Py–Im-polyamide conjugates. The practical use of protein-Py–Im-polyamide conjugates for addressing DNA structures in an orthogonal but non-covalent manner, therefore, remains to be established. PMID:26053396

  11. Synthesis, spectral and chemical reactivity analysis of 2,4-dinitrophenyl hydrazone having pyrrole moiety

    NASA Astrophysics Data System (ADS)

    Rawat, Poonam; Singh, R. N.

    2015-10-01

    In this paper we present combined experimental and theoretical study on a newly synthesized ethyl 2-cyano-3-[5-(2,4-dinitrophenyl)-hydrazonomethyl)-1H-pyrrol-2-yl]-acrylate (ECDHPA). Quantum chemical calculations have been performed using HF/6-31G(d,p), B3LYP/6-31G(d,p) and B3LYP/6-31++G(d,p) levels. The results obtained from quantum chemical calculations matches well with the experimental finding. Molecular electrostatic potential (MEP) surface of N17sbnd H39⋯O42dbnd N37 zone show green color having moderate electrostatic potential indicating hydrogen bonding. For the interactions N17sbnd H34⋯O42 electron density and its Laplacian (∇2ρBCP) are in the range 0.051-0.119 a.u., indicating interaction follows the Koch and Popelier criteria. The observed Nsbnd H (νN17sbnd H34) stretch of sbnd CHdbnd Nsbnd NH sbnd part of molecule at 3262 cm-1 indicate the red shift and the involvement in hydrogen bonding. Natural bond orbital (NBO) investigation shows various intramolecular interactions within molecule. Electrophilic charge transfer (ECT) has been calculated to investigate the relative electrophilic or nucleophilic behavior of reactant molecules involved in chemical reaction. The first hyperpolarizability (β0) value of ECDHPA is calculated as 22.42 × 10-30 esu. The solvent-induced effects on the non-linear optical properties (NLO) were studied using self-consistent reaction field (SCRF) method and observed that the β0 value increases as solvent polarity increases. DFT based electronic descriptors analysis reveals that studied molecule is a strong electrophile and it would undergo to form various heterocyclic compounds.

  12. Excess L-arginine restores endothelium-dependent relaxation impaired by monocrotaline pyrrole

    SciTech Connect

    Cheng Wei; Oike, Masahiro . E-mail: moike@pharmaco.med.kyushu-u.ac.jp; Hirakawa, Masakazu; Ohnaka, Keizo; Koyama, Tetsuya; Ito, Yushi

    2005-09-15

    The pyrrolizidine alkaloid plant toxin monocrotaline pyrrole (MCTP) causes pulmonary hypertension in experimental animals. The present study aimed to examine the effects of MCTP on the endothelium-dependent relaxation. We constructed an in vitro disease model of pulmonary hypertension by overlaying MCTP-treated bovine pulmonary artery endothelial cells (CPAEs) onto pulmonary artery smooth muscle cell-embedded collagen gel lattice. Acetylcholine (Ach) induced a relaxation of the control CPAEs-overlaid gels that were pre-contracted with noradrenaline, and the relaxation was inhibited by L-NAME, an inhibitor of NO synthase (NOS). In contrast, when MCTP-treated CPAEs were overlaid, the pre-contracted gels did not show a relaxation in response to Ach in the presence of 0.5 mM L-arginine. Expression of endothelial NOS protein, Ach-induced Ca{sup 2+} transients and cellular uptake of L-[{sup 3}H]arginine were significantly smaller in MCTP-treated CPAEs than in control cells, indicating that these changes were responsible for the impaired NO production in MCTP-treated CPAEs. Since cellular uptake of L-[{sup 3}H]arginine linearly increased according to its extracellular concentration, we hypothesized that the excess concentration of extracellular L-arginine might restore NO production in MCTP-treated CPAEs. As expected, in the presence of 10 mM L-arginine, Ach showed a relaxation of the MCTP-treated CPAEs-overlaid gels. These results indicate that the impaired NO production in damaged endothelial cells can be reversed by supplying excess L-arginine.

  13. Monocrotaline pyrrole-induced endothelial cell megalocytosis involves a Golgi blockade mechanism.

    PubMed

    Shah, Mehul; Patel, Kirit; Sehgal, Pravin B

    2005-04-01

    Pyrrolizidine alkaloids initiate disease in the lung (pulmonary hypertension), liver (veno-occlusive disease and cirrhosis), and kidneys (afferent arteriolar block and mesangiolysis) by inducing a megalocytotic phenotype in target endothelial and parenchymal cells. A "hit-and-run" type of exposure to the bioactive pyrrolizidine results, within 2-3 days, in enlarged cells with large nuclei and enlarged Golgi and endoplasmic reticulum, while the cells remain in G2/M block. In the present study, we recapitulated monocrotaline pyrrole (MCTP)-induced megalocytosis in cultures of bovine pulmonary arterial endothelial cells (PAEC), human Hep3B hepatocytes, human type II-like alveolar epithelial cells (A549), and human pulmonary arterial smooth muscle cells (PASMC) and investigated the subcellular mechanism involved. There was an inverse relationship between reduction in caveolin (Cav)-1 levels and stimulation of promitogenic STAT3 and ERK1/2 cell signaling. In megalocytotic PAEC, the Golgi scaffolding protein GM130 was shifted from membranes with heavy density to those with a lighter density. This lighter Golgi fraction was enriched for hypo-oligomeric Cav-1, indicating dysfunctional trafficking of cargo. Immunofluorescence imaging studies confirmed the trapping of Cav-1 in a GM130-positive Golgi compartment. There was an increase in Ser25 phosphorylation of GM130 (typically a prelude to Golgi fragmentation and mitosis) and increased association between pGM130, cdc2 kinase, and Cav-1. Nevertheless, megalocytotic MCTP-treated cells showed reduced entry into mitosis upon stimulation with 2-methoxyestradiol (2-ME), reduced 2-ME-induced Golgi fragmentation, and a slowing of Golgi reassembly after nocodazole-induced fragmentation. These data suggest that a disruption of the trafficking and mitosis sensor functions of the Golgi may represent the subcellular mechanism leading to MCTP-induced megalocytosis ("the Golgi blockade hypothesis"). PMID:15561761

  14. Nerve cells culture from lumbar spinal cord on surfaces modified by plasma pyrrole polymerization.

    PubMed

    Zuñiga-Aguilar, E; Olayo, R; Ramírez-Fernández, O; Morales, J; Godínez, R

    2014-01-01

    Currently, there are several techniques for modified cell culture surfaces under research to improve cell growth and adhesion. Recently, different methods have been used for surface coating, using biomolecules that enhance cell attachment and growth of nerve cells from spinal cord, such as the use of Poly-DL-Ornithine/Laminin. Plasma-polymerized pyrrole (PPy)-treated surfaces have showed improvement on surfaces biocompatibility with the cells in culture since they do not interfere with any of the biological cell functions. In the present work, we present a novel mouse nerve cell culture technique, using PPy-treated cell culture surfaces. A comparative study of cell survival using Poly-DL-Ornithine/Laminin-treated surfaces was performed. Our results of cell survival when compared with data already reported by other investigators, show that cells cultured on the PPy-modified surface increased survival up to 21 days when compared with Poly-DL-Ornithine/Laminin-coated culture, where 8 days cell survival was obtained. There were electrical and morphological differences in the nerve cells grown in the different surfaces. By comparing the peak ion currents of Poly-DL-Ornithine/Laminin-seeded cells for 8 days with cells grown for 21 days on PPy, an increase of 516% in the Na(+) current and 127% in K(+) currents in cells seeded on PPy were observed. Immunofluorescence techniques showed the presence of cell synapses and culture viability after 21 days. Our results then showed that PPy-modified surfaces are an alternative culture method that increases nerve cells survival from lumbar spinal cord cell culture by preserving its electrical and morphological features. PMID:24650203

  15. Reaction of cationic transition metal complexes with furan, thiophene, and pyrrole. Model studies relevant to hydrodeoxygenation, hydrodesulfurization, and hydrodenitrogenation

    SciTech Connect

    Bakhtiar, R.; Jacobson, D.B.

    1995-12-01

    Hydrodesulfurization, denitrogenation, and deoxygenation reactions are important reactions in many research areas such as the removal of nitrogen and sulfur from coal. In this report, reactions of Fe{sup +} and FeL{sup +} (L = O, C{sub 4}H{sub 6}, c-C{sub 5}H{sub 6}, c-C{sub 5}H{sub 6}, C{sub 6}H{sub 6}, C{sub 5}H{sub 4}(=CH{sub 2})) with thiophene, furan, and pyrrole in the gas phase by using Fourier transform mass spectrometry (FTMS) are described. Fe{sup +}, Fe(C{sub 5}H{sub 5}){sup +}, and FeC{sub 6}H{sub 6}{sup +} yield exclusive, rapid adduct formation with thiophene, furan, and pyrrole. The iron-diene complex FeC{sub 4}H{sub 6}{sup +}, Fe(c-C{sub 5}H{sub 6}){sup +}), as well as FeC{sub 5}H{sub 4}(=CH{sub 2}){sup +} and FeO{sup +} are quite reactive. An intriguing reaction is the predominant, direct extrusion of CO from furan by FeC{sub 4}H{sub 6}{sup +}, Fe(c-C{sub 5}H{sub 6}){sup +}, Fe(C{sub 5}H{sub 4}(=CH{sub 2}){sup +}. In addition, FeC{sub 4}H{sub 6}{sup +} and Fe(c-C{sub 5}H{sub 6}){sup +} yield minor amounts of HCN extrusion from pyrrole. The absence of CS extrusion from thiophene may be due to the higher energy requirements than that for CO extrusion from furan or HCN extrusion from pyrrole. The dominant reaction channel for reaction of Fe(c-C{sub 5}H{sub 6}){sup +} with pyrrole and thiophene is hydrogen atom displacement which implies D{sup 0}(Fe(C{sub 5}H{sub 5}){sup +}-C{sub 4}H{sub 4}X) > D{sup 0}(Fe(C{sub 5}H{sub 5}){sup +}-H) = 46 {+-} 5 kcal/mol. D{sup 0}(Fe{sup +}-C{sub 4}H{sub 4}S) and D{sup 0}(Fe{sup +}C{sub 4}H{sub 5}N) = D{sup 0}(Fe{sup +}-C{sub 4}H{sub 6}) = 48 {+-} 5 kcal/mol. Finally, D{sup 0}(Fe{sup +}-C{sub 4}H{sub 4}O) > D{sup 0}(Fe{sup +}-C{sub 2}H{sub 4}) = 39.9 {+-} 1.4 kcal/mol and D{sup 0}(Fe{sup +}-C{sub 4}H{sub 4}O) < D{sup 0}(Fe{sup +}-C{sub 6}H{sub 6}) = 55 {+-} 5 kcal/mol. FeO{sup +} reacts rapidly with thiophene, furan, and pyrrole to yield initial loss of CO followed by additional neutral losses.

  16. Eco-friendly synthesis, spectral and computational study of pyrrole-2-carboxaldehyde salicylhydrazone (PCSH) for its application

    NASA Astrophysics Data System (ADS)

    Rawat, Poonam; Singh, R. N.

    2015-11-01

    In this paper we present eco-friendly synthesis of Pyrrole-2-carboxaldehyde salicylhydrazone (PCSH) and its molecular structural elucidation, spectral analysis and reactivity evaluation. Pyrrole-2-carboxaldehyde and salicyl hydrazide in water undergo condensation reaction to produce PCSH in good yield (88%). All results of quantum chemical calculation corroborate well with the experimental findings. The PCSH has been characterized by elemental analysis, FT-IR, 1H NMR, UV-Visible, and ESI-Mass spectroscopy. Density functional theory (DFT) calculations have been carried out for PCSH by performing B3LYP functional using the standard basis set 6-31 + g (d, p), and additional basis sets 6D and 10F. Two most stable conformers for PCSH have been observed around the dihedral angle N1C5C6N7. The red shift observed in O-H stretching vibration in the FT-IR spectrum indicates the presence of intramolecular hydrogen bonding. The rotational barrier between syn-syn (closed) syn-syn (open) found to be 2966.9 kcal/mol. The presence of hydroxyl proton at 10.45 ppm downfield in experimental 1H NMR spectrum confirms the existence of intramolecular hydrogen bonding in PCSH. Further, topological parameters analysis at the bond critical points using 'Atoms in molecules' theory reveals intramolecular hydrogen bonding. The energy of homonuclear intramolecular hydrogen bond (O17-H28⋯O10) is calculated to be 14.03 kcal/mol. The ellipticity results confirm the resonance assisted nature of this intramolecular hydrogen bond. In addition to this work, the reactive sites in PCSH have been explored using DFT descriptors, predicting nucleophilic reactions at carbonyl carbon and electrophilic reactions are possible at pyrrolic NH, amidic NH and double bond Cdbnd N leading to several heterocyclic products and metal complexes.

  17. Antimicrobial activity, structural evaluation and vibrational (FT-IR and FT-Raman) study of pyrrole containing vinyl derivatives

    NASA Astrophysics Data System (ADS)

    Singh, R. N.; Rawat, Poonam; Sahu, Sangeeta; Kumar, Yashvinder

    2016-02-01

    In this paper we present structural and vibrational study of three vinylpyrrole derivatives: 2-Cyano-3-(1H-pyrrol-2-yl)-acrylamide (CPA), 1-(1H-Pyrrol-2-yl)-Pent-1-en-3-one (PP) and 1-(1H-Pyrrol-2-yl)-but-1-en-3-one (PB), using ab initio, DFT and experimental approaches. The quantum chemical calculation have been performed on B3LYP method and 6-311 + G(d,p) basis set. The experimental FT-IR and Raman wavenumbers were compared with the respective theoretical values obtained from DFT calculations and found to agree well. The experimental FT-IR and Raman study clearly indicate that the compound exist as dimer in solid state. The binding energies of (CPA), (PP) and (PB) dimers are found to be 20.95, 18.75 and 19.18 kcal/mol, respectively. The vibrational analysis shows red shifts in vN-H and vCdbnd O stretching as result of dimer formation. Stability of the molecule arising from hyperconjugative interactions and charge delocalization has been analyzed using NBO analysis. Topological and energetic parameters reveal the nature of interactions in dimer. The local electronic descriptors analyses were used to predict the reactive sites in the molecule. Calculated first static hyperpolarizability of CPA, PP and PB is found to be 10.41 × 10- 30, 18.93 × 10- 30, 18.29 × 10- 30 esu, respectively, shows that investigated molecules will have non-linear optical response and might be used as non-linear optical (NLO) material. These vinylpyrrole compounds (CPA), (PP) and (PB) showed antifungal and antibacterial activity against Aspergillus niger and gram-positive bacteria Bacillus subtili.

  18. Antimicrobial activity, structural evaluation and vibrational (FT-IR and FT-Raman) study of pyrrole containing vinyl derivatives.

    PubMed

    Singh, R N; Rawat, Poonam; Sahu, Sangeeta; Kumar, Yashvinder

    2016-02-01

    In this paper we present structural and vibrational study of three vinylpyrrole derivatives: 2-Cyano-3-(1H-pyrrol-2-yl)-acrylamide (CPA), 1-(1H-Pyrrol-2-yl)-Pent-1-en-3-one (PP) and 1-(1H-Pyrrol-2-yl)-but-1-en-3-one (PB), using ab initio, DFT and experimental approaches. The quantum chemical calculation have been performed on B3LYP method and 6-311+G(d,p) basis set. The experimental FT-IR and Raman wavenumbers were compared with the respective theoretical values obtained from DFT calculations and found to agree well. The experimental FT-IR and Raman study clearly indicate that the compound exist as dimer in solid state. The binding energies of (CPA), (PP) and (PB) dimers are found to be 20.95, 18.75 and 19.18 kcal/mol, respectively. The vibrational analysis shows red shifts in v(N-H) and v(C=O) stretching as result of dimer formation. Stability of the molecule arising from hyperconjugative interactions and charge delocalization has been analyzed using NBO analysis. Topological and energetic parameters reveal the nature of interactions in dimer. The local electronic descriptors analyses were used to predict the reactive sites in the molecule. Calculated first static hyperpolarizability of CPA, PP and PB is found to be 10.41×10(-30), 18.93×10(-30), 18.29×10(-30) esu, respectively, shows that investigated molecules will have non-linear optical response and might be used as non-linear optical (NLO) material. These vinylpyrrole compounds (CPA), (PP) and (PB) showed antifungal and antibacterial activity against Aspergillus niger and gram-positive bacteria Bacillus subtili. PMID:26513227

  19. Macrocyclic Transformations from Norrole to Isonorrole and an N-Confused Corrole with a Fused Hexacyclic Ring System Triggered by a Pyrrole Substituent.

    PubMed

    Li, Miao; Wei, Pingchun; Ishida, Masatoshi; Li, Xin; Savage, Mathew; Guo, Rui; Ou, Zhongping; Yang, Sihai; Furuta, Hiroyuki; Xie, Yongshu

    2016-02-01

    Three kinds of fused porphyrinoids, L2-L4, possessing different types of corrole-based frameworks were synthesized from a pyrrole-substituted corrole isomer (norrole L1). Oxidation of L1 afforded a unique N-Cmeso -fused pyrrolyl isonorrole L2, involving the fusion of an auxiliary pyrrolic NH moiety with a meso-sp(3) -hybridized carbon atom. Subsequently, L2 underwent macrocycle transformations to give singly and doubly N-CAr -fused N-confused corroles, L3 and L4, respectively. L3 and L4 contain fused [5.7.6.5]-tetra- and [5.6.7.7.6.5]-hexacyclic structures, respectively, prepared through lateral annulation. These skeletal transformation reactions from norrole to its isomer isonorrole and finally to N-confused corrole indicate that multiply fused porphyrinoids could be readily synthesized from pyrrole-appended confused porphyrinoids. PMID:26822959

  20. Preparation of a FeOCl derivative with pyrrole and its performance as a cathode material in a secondary lithium battery system

    NASA Astrophysics Data System (ADS)

    Sakaebe, Hikari; Higuchi, Shunichi; Kanamura, Kiyoshi; Fujimoto, Hiroyuki; Takehara, Zen-ichiro

    A FeOCl derivative is prepared in water using pyrrole (a py-FeOOH). The X-ray diffraction pattern of the product is similar to γ-FeOOH. From chemical analyses and the FT-IR spectrum, it is found that pyrrole remains in the product with an atomic ratio of Fe:N = 3:1. From discharge/charge cycling tests, it is confirmed that a py-FeOOH is rechargeable and has a specific capacity of 60 mAh g -1 between 2.0 and 4.5 V on the 20th discharge. When N-methylpyrrole (which has similar structure) is used instead of pyrrole, the derivative yields larger capacity during ten cycles.

  1. The evidence of the mode selectivity of the infrared predissociation reaction of the hydrogen bonds in the aniline water pyrrole cluster cation

    NASA Astrophysics Data System (ADS)

    Nakanaga, Taisuke; Piracha, Naveed K.; Ito, Fumiyuki

    2001-10-01

    The infrared spectrum of aniline-water-pyrrole cluster cation has been measured in the 3 μm region. Four strong vibrational bands were observed at 3313, 3515, 3637, and 3721 cm-1, and the cluster dissociated into fragments in two reaction paths, AWP +→AW ++P and AWP +→AP ++W (A: aniline, W: water, P: pyrrole) when it absorbed an infrared photon. The branching ratio (AW +/AP +) has been determined to be 0.20±0.02 for the NH stretching vibration of aniline ( 3313 cm-1, hydrogen-bonded to pyrrole) and 0.14±0.03 for the other three bands. This vibrational mode dependence should be due to the fast energy transfer from the NH to the intermolecular vibration through the hydrogen bond.

  2. Discovery, synthesis, and biological evaluation of novel pyrrole derivatives as highly selective potassium-competitive acid blockers.

    PubMed

    Nishida, Haruyuki; Hasuoka, Atsushi; Arikawa, Yasuyoshi; Kurasawa, Osamu; Hirase, Keizo; Inatomi, Nobuhiro; Hori, Yasunobu; Sato, Fumihiko; Tarui, Naoki; Imanishi, Akio; Kondo, Mitsuyo; Takagi, Terufumi; Kajino, Masahiro

    2012-06-15

    To discover a gastric antisecretory agent more potent than existing proton pump inhibitors, novel pyrrole derivatives were synthesized, and their H(+),K(+)-ATPase inhibitory activities and inhibitory action on histamine-stimulated gastric acid secretion in rats were evaluated. Among the compounds synthesized, compound 17a exhibited selective and potent H(+),K(+)-ATPase inhibitory activity through reversible and K(+)-competitive ionic binding; furthermore, compound 17c exhibited potent inhibitory action on histamine-stimulated gastric acid secretion in rats and Heidenhain pouch dogs. PMID:22579619

  3. Hepatoselectivity of statins: design and synthesis of 4-sulfamoyl pyrroles as HMG-CoA reductase inhibitors.

    PubMed

    Park, William K C; Kennedy, Robert M; Larsen, Scott D; Miller, Steve; Roth, Bruce D; Song, Yuntao; Steinbaugh, Bruce A; Sun, Kevin; Tait, Bradley D; Kowala, Mark C; Trivedi, Bharat K; Auerbach, Bruce; Askew, Valerie; Dillon, Lisa; Hanselman, Jeffrey C; Lin, Zhiwu; Lu, Gina H; Robertson, Andrew; Sekerke, Catherine

    2008-02-01

    4-Sulfamoyl pyrroles were designed as novel hepatoselective HMG-CoA reductase inhibitors (statins) to reduce myalgia, a statin-induced adverse effect. The compounds were prepared via a [3+2] cycloaddition of a Münchnone with a sulfonamide-substituted alkyne. We identified compounds with greater selectivity for hepatocytes compared to L6-myocytes than rosuvastatin and atorvastatin. There was an inverse correlation of myocyte potencies and ClogP values. A number of analogs were effective at reducing cholesterol in acute and chronic in vivo models but they lacked sufficient chronic in vivo activity to warrant further development. PMID:18155906

  4. Ru-Catalysed C–H Arylation of Indoles and Pyrroles with Boronic Acids: Scope and Mechanistic Studies

    PubMed Central

    Sollert, Carina; Devaraj, Karthik; Orthaber, Andreas; Gates, Paul J; Pilarski, Lukasz T

    2015-01-01

    The Ru-catalysed C2–H arylation of indoles and pyrroles by using boronic acids under oxidative conditions is reported. This reaction can be applied to tryptophan derivatives and tolerates a wide range of functional groups on both coupling partners, including bromides and iodides, which can be further derivatised selectively. New indole-based ruthenacyclic complexes are described and investigated as possible intermediates in the reaction. Mechanistic studies suggest the on-cycle intermediates do not possess a para-cymene ligand and that the on-cycle metalation occurs through an electrophilic attack by the Ru centre. PMID:25689052

  5. A study on the spectroscopy and photophysics of N-phenyl pyrrole and N-phenyl pyrazole

    NASA Astrophysics Data System (ADS)

    Sarkar, Aindrila; Chakravorti, Sankar

    1995-03-01

    Comprehensive spectroscopic and photophysical studies of N-phenyl pyrrole (PPr) and N-phenyl pyrazole (PPz) in different solvents show that a new emission band appears due to aggregation of PPr in water. The presence of β-cyclodextrin (β-CD) in aqueous solution of PPr causes deaggregation but the twisted intramolecular charge transfer emission ceases due to the cavity effect. In PPz, aggregation and TICT emission are absent. Protonation in PPz is restricted to a single site only at very high acid concentration. Both the molecules are planar in the ground state.

  6. [N,P]-pyrrole PdCl2 complexes catalyzed the formation of dibenzo-α-pyrone and lactam analogues.

    PubMed

    Suárez-Meneses, J V; Oukhrib, A; Gouygou, M; Urrutigoïty, M; Daran, J-C; Cordero-Vargas, A; Ortega-Alfaro, M C; López-Cortés, J G

    2016-06-21

    We herein report the synthesis and catalytic application of a new family of [N,P] ligands based on the pyrrole ring with alpha-phosphine or phosphole units. Their palladium complexes (3a-d) were obtained in very good yields and their catalytic properties were evaluated in the direct intramolecular arylation to obtain both benzopyranones and phenanthridinones. The air stable complex 3a exhibited the best catalytic performance of this series of complexes, using 1 mol% of catalyst in combination with microwaves to promote this reaction. PMID:27221355

  7. Novel reversible monoamine oxidase A inhibitors: highly potent and selective 3-(1H-pyrrol-3-yl)-2-oxazolidinones.

    PubMed

    Valente, Sergio; Tomassi, Stefano; Tempera, Giampiero; Saccoccio, Stefania; Agostinelli, Enzo; Mai, Antonello

    2011-12-01

    Monoamine oxidases (MAOs) are involved in various psychiatric and neurodegenerative disorders; hence, MAO inhibitors are useful agents in the therapy of Parkinson's disease, Alzheimer's dementia, and depression syndrome. Herein we report a novel series of 3-(1H-pyrrol-3-yl)-2-oxazolidinones 3-7 as reversible, highly potent and selective anti-MAO-A agents. In particular, 4b, 5b, and 4c showed a K(i-MAO-A) of 0.6, 0.8, and 1 nM, respectively, 4c being 200000-fold selective for MAO-A with respect to MAO-B. PMID:22017497

  8. Efficient and green synthesis of tetrasubstituted pyrroles promoted by task-specific basic ionic liquids as catalyst in aqueous media.

    PubMed

    Yavari, Issa; Kowsari, Elaheh

    2009-11-01

    Synthesis of tetrasubstituted pyrroles by the three-component condensation reaction of acid chlorides, dialkyl acetylenedicarboxylates, and amino acids in the presence of various room-temperature ionic liquids (RTILs) as catalysts in water is reported. Among the ionic liquids used, the basic functionalized ionic liquid, butyl methyl imidazolium hydroxide [bmim]OH, was the most effective catalyst. The influence of reaction temperature, reaction time, and amount of ionic liquid on the reaction was investigated. The [bmim]OH/H(2)O catalyst system could be reused for at least five recycles without appreciable loss of efficiency. PMID:19381850

  9. One Step Continuous Flow Synthesis of Highly Substituted Pyrrole-3-Carboxylic Acid Derivatives via in situ Hydrolysis of tert-Butyl Esters

    PubMed Central

    Herath, Ananda; Cosford, Nicholas D. P.

    2010-01-01

    The first one-step, continuous flow synthesis of pyrrole-3-carboxylic acids directly from tert-butyl acetoacetates, amines and 2-bromoketones is reported. The HBr generated as a by-product in the Hantzsch reaction was utilized in the flow method to saponify the t-butyl esters in situ to provide the corresponding acids in a single microreactor. The protocol was used in the multistep synthesis of pyrrole-3-carboxamides, including two CB1 inverse agonists, directly from commercially available starting materials in a single continuous process. PMID:20964284

  10. Strongly adherent polypyrrole coatings obtained by electropolymerization of pyrrole on oxidizable metals in aqueous electrolytic media II. Zinc and zinc coated steel

    SciTech Connect

    Ferreira, C.A.; Zaid, B.; Aeiyach, S.; Lacaze, P.C.

    1996-01-01

    Electropolymerization of pyrrole was carried out on Zn electrodes in aqueous solution of oxalate, after the Zn surface had been chemically or electrochemically treated with sulfides. Very homogeneous and strongly adherent polypyrrole (PPy) coatings were obtained on these modified surfaces with galvanostatic polarization in an aqueous medium containing 0.5M pyrrole and 0.1M K{sub 2}C{sub 2}O{sub 4}. In the neutral state the adherence of PPy failed but could be improved if the coating was cured or over-oxidized. {copyright} {ital 1996 American Institute of Physics.}

  11. Chemodivergent, One-Pot, Multi-Component Synthesis of Pyrroles and Tetrahydropyridines under Solvent- and Catalyst-Free Conditions Using the Grinding Method.

    PubMed

    Dhinakaran, Isaivani; Padmini, Vediappen; Bhuvanesh, Nattamai

    2016-05-01

    A highly efficient, chemoselective synthesis of a library of polysubstituted pyrroles and tetrahydropyridines has been achieved through the one-pot, multicomponent reactions of ethyl (E)-3-(aryl/alkyl amino) acrylates, 2,2-dihydroxy-1-arylethan-1-ones, and malononitrile under solvent- and catalyst-free grinding conditions. The selective formation of pyrrole or tetrahydropyridines relied on substitution of the N-aryl of ethyl (E)-3-(4-arylamino) acrylates. These reactions presumably occurred via a domino Knoevenagel condensation and Michael addition followed by an intramolecular cyclization sequence of reactions in a single transformation. PMID:26972275

  12. Synthesis, Antimicrobial and cytotoxic activity of New Heterocyclic Hybrids Based on 2,5-Dimethylpyrrole and Pyrrole Scaffolds

    PubMed Central

    Joshi, S. D.; More, U. A.; Kulkarni, V. H.

    2013-01-01

    A series of 4-(2,5-dimethylpyrrol-1-yl)/4-pyrrol-1-yl benzoic acid hydrazide analogs, some derived triazoles, azetidinones, thiazolidinones, and pyrroles have been synthesized in good yields and structures of these compounds were established by IR, 1H NMR, 13C NMR, mass spectral, and elemental analysis. These compounds were evaluated for their preliminary in vitro antibacterial, antifungal, and antitubercular activity against Mycobacterium tuberculosis H37 Rv strain by the broth dilution assay method. Twenty one of these compounds displayed good antimicrobial activity, with a MIC value of 1-4 μg/ml. Several compounds 4c, 8-10, 15b-15h, and 16b-16d exhibited good in vitro antitubercular activity with MIC value 1-2 μg/ml. Further, some title compounds were also assessed for their cytotoxic activity (IC50) against mammalian Vero cell lines and A549 (lung adenocarcinoma) cell lines using the MTT assay method. The results revealed that these compounds exhibit antitubercular activity at non-cytotoxic concentrations. PMID:24082347

  13. Design, synthesis and biological evaluation of hetero-aromatic moieties substituted pyrrole-2-carbonitrile derivatives as dipeptidyl peptidase IV inhibitors.

    PubMed

    Ji, Xun; Su, Mingbo; Wang, Jiang; Deng, Guanghui; Deng, Sisi; Li, Zeng; Tang, Chunlan; Li, Jingya; Li, Jia; Zhao, Linxiang; Jiang, Hualiang; Liu, Hong

    2014-03-21

    A series of novel hetero-aromatic moieties substituted α-amino pyrrole-2-carbonitrile derivatives was designed and synthesized based on structure-activity relationships (SARs) of pyrrole-2-carbonitrile inhibitors. All compounds demonstrated good dipeptidyl peptidase IV (DPP4) inhibitory activities (IC50 = 0.004-113.6 μM). Moreover, compounds 6h (IC50 = 0.004 μM) and 6n (IC50 = 0.01 μM) showed excellent inhibitory activities against DPP4, good selectivity (compound 6h, selective ratio: DPP8/DPP4 = 450.0; DPP9/DPP4 = 375.0; compound 6n, selective ratio: DPP8/DPP4 = 470.0; DPP9/DPP4 = 750.0) and good efficacy in an oral glucose tolerance test in ICR mice. Furthermore, compounds 6h and 6n demonstrated moderate PK properties (compound 6h, F% = 37.8%, t1/2 = 1.45 h; compound 6n, F% = 16.8%, t1/2 = 3.64 h). PMID:24531224

  14. An experimental study of low-pressure premixed pyrrole/oxygen/argon flames with tunable synchrotron photoionization

    SciTech Connect

    Tian, Zhenyu; Li, Yuyang; Zhang, Taichang; Qi, Fei; Zhu, Aiguo; Cui, Zhifeng

    2007-10-15

    Two premixed laminar pyrrole/oxygen/argon flames at 3.33 kPa (25 Torr) with equivalence ratios of 0.55 (C/O/N = 1:5.19:0.25) and 1.84 (C/O/N = 1:1.56:0.25) have been investigated using tunable synchrotron photoionization and molecular-beam mass spectrometry techniques. All observed flame species, including some nitrogen-containing intermediates, have been identified by measurements of photoionization efficiency spectra. Mole fraction profiles of species including reactants, intermediates, and products have been determined by scanning burner position at some selected photon energies near ionization thresholds, and flame temperature has been measured by a Pt/Pt-13% Rh thermocouple. The results indicate that N{sub 2}, NO, and NO{sub 2} are the major nitrogenous products, while hydrogen cyanide, isocyanic acid, and 2-propenenitrile are the most important nitrogen-containing intermediates in pyrrole flames. Radicals such as methyl, propargyl, allyl, cyanomethyl, n-propyl, isobutyl, cyclopentadienyl, phenyl, cyclohexyl, phenoxy, and 4-methylbenzyl are observed as well. Moreover, ethenol and methylacrylonitrile are also detected. Reaction pathways involving the major species are proposed. The new results will be useful in developing a kinetic model of nitrogenous compound combustion. (author)

  15. Conductivity Measurements of Pyrrole Molecules Incorporated into Chemically Adsorbed Monolayer by Conducting Probe Technique in Atomic Force Microscope

    NASA Astrophysics Data System (ADS)

    Yamamoto, Shin‑ichi; Ogawa, Kazufumi

    2006-03-01

    A monomolecular layer containing pyrrolyl groups at the surface was prepared between two parallel Pt electrodes on a glass substrate by a chemical adsorption technique using N-[11-(trichlorosilyl)undecyl] pyrrole (PNN). Then, the pyrrolyl was polymerized with pure water by applying a DC voltage of 10 V between the two Pt electrodes. It was confirmed using an optical microscope that many electric paths were formed between the two Pt electrodes by a decoration technique using electrochemical polymerization in an aqueous medium containing pyrrole after the polymerization. Next, a conductive probe of an atomic force microscope (AFM) was used to examine an electrical polymerized path through the surface of the polypyrrolyl group in a chemically adsorbed monomolecular layer. The resistance of one electric path in the monomolecular layer was measured using an AFM with an attached Au-covered tip at room temperature. With a measurement volume of about 0.2 nm (the thickness of the electric path in the monomolecular layer) × 200 μm (the average width of the electric path) × 100 μm (the distance between the Pt electrode and the Au-covered AFM tip), the resistance at room temperature of one electric path was 4 k Ω under ambient conditions. From the results in the atmosphere, the conductivity of a super long conjugated polypyrrolyl group without any dopant in a lateral direction was ohmically estimated to be at least 6.0 × 105 S/m.

  16. Spectroscopic and quantum chemical correlation for structural evaluation, chemical reactivity and non-linear optical property investigation of two chalcone having pyrrole moiety: A comparative study

    NASA Astrophysics Data System (ADS)

    Singh, R. N.; Rawat, Poonam; Baboo, Vikas; Kumar, Yashvinder

    2015-04-01

    As part of study of pyrrole-chalcone, ethyl 4-[3-(4-chloro-phenyl)-acryloyl]-3,5-dimethyl-1H-pyrrole-2-carboxylate (ECADPC) and ethyl 3,5-dimethyl-4-[3-(3-nitro-phenyl)-acryloyl]-1H-pyrrole-2-carboxylate (EDNAPC) have been synthesized by Claisen-Schmidt condensation using chloro- and nitro- substituted aromatic aldehyde and ethyl 3,5-dimetyl-4-acetyl-1H-pyrrole-2-carboxylate. The products were characterized by 1H NMR, UV-Visible, FT-IR spectroscopic methods and Quantum chemical calculations. Conformational analysis, normal mode frequencies and corresponding vibrational assignments based on potential energy distribution study revealed that ECADPC and EDNAPC exist in dimer form in solid state. 'Quantum theory of Atoms in molecules' (QTAIM) analysis has been performed to know the strength of intra- and intermolecular interactions. The UV-Visible spectra study reveals that the compounds are almost transparent in the visible region. Angular distribution of the probability density for population conformational analysis of ECADPC and EDNAPC are determined by analysis of the potential energy surface (PES). The calculated static first hyperpolarizability (β0) value for monomers of ECADPC and EDNAPC are 17.078 × 10-30 and 2.344 × 10-30 esu respectively, infers ECADPC to be more suitable for non-linear optical (NLO) response than EDNAPC. The electronic descriptors analysis predicts the nature of local reactive sites within the molecule.

  17. Reconciling Experiment and Theory in the Use of Aryl-Extended Calix[4]pyrrole Receptors for the Experimental Quantification of Chloride–π Interactions in Solution

    PubMed Central

    Bauzá, Antonio; Quiñonero, David; Frontera, Antonio; Ballester, Pablo

    2015-01-01

    In this manuscript we consider from a theoretical point of view the recently reported experimental quantification of anion–π interactions (the attractive force between electron deficient aromatic rings and anions) in solution using aryl extended calix[4]pyrrole receptors as model systems. Experimentally, two series of calix[4]pyrrole receptors functionalized, respectively, with two and four aryl rings at the meso positions, were used to assess the strength of chloride–π interactions in acetonitrile solution. As a result of these studies the contribution of each individual chloride–π interaction was quantified to be very small (<1 kcal/mol). This result is in contrast with the values derived from most theoretical calculations. Herein we report a theoretical study using high-level density functional theory (DFT) calculations that provides a plausible explanation for the observed disagreement between theory and experiment. The study reveals the existence of molecular interactions between solvent molecules and the aromatic walls of the receptors that strongly modulate the chloride–π interaction. In addition, the obtained theoretical results also suggest that the chloride-calix[4]pyrrole complex used as reference to dissect experimentally the contribution of the chloride–π interactions to the total binding energy for both the two and four-wall aryl-extended calix[4]pyrrole model systems is probably not ideal. PMID:25913375

  18. Triflic acid controlled successive annelation of aromatic sulfonamides: An efficient one-pot synthesis of N-sulfonyl pyrroles, indoles and carbazoles

    PubMed Central

    Abid, Mohammed; Teixeira, Liliana; Török, Béla

    2009-01-01

    A novel one-pot synthesis of N-substituted heterocycles via successive cyclization/annelation starting from primary sulfonamides is described. This process leads directly to N-sulfonyl pyrroles, indoles and carbazoles. The selection of appropriate reactant/triflic acid ratio successfully controls the formation of the desired product. PMID:19629194

  19. One-pot nitro-Mannich/hydroamination cascades for the direct synthesis of 2,5-disubstituted pyrroles using base and gold catalysis.

    PubMed

    Barber, David M; Sanganee, Hitesh; Dixon, Darren J

    2011-04-21

    An efficient, easy to perform, one-pot reaction cascade for the synthesis of 2,5-disubstituted pyrroles from p-toluenesulfonyl protected imines and 4-nitrobut-1-yne under a combination of base and gold(III) catalysis is reported. PMID:21399786

  20. Supramolecular organization of calix[4]pyrrole with a methyl-trialkylammonium anion exchanger leads to remarkable reversal of selectivity for sulfate extraction vs. nitrate

    SciTech Connect

    Borman, Christopher J; Custelcean, Radu; Hay, Benjamin; Bill, Nathan; Sessler, Jonathan L.; Moyer, Bruce A

    2011-01-01

    meso-Octamethylcalix[4]pyrrole (C4P) enhances sulfate selectivity in solvent extraction by Aliquat 336N, an effect ascribed to the supramolecular preorganization and thermodynamic stability imparted by insertion of the methyl group of the Aliquat cation into the cup of C4P in its cone conformation.

  1. Highly Sensitive Bisphenol-A Electrochemical Aptasensor Based on Poly(Pyrrole-Nitrilotriacetic Acid)-Aptamer Film.

    PubMed

    Kazane, Imen; Gorgy, Karine; Gondran, Chantal; Spinelli, Nicolas; Zazoua, Ali; Defrancq, E; Cosnier, Serge

    2016-07-19

    An electrochemical highly sensitive aptasensor was developed based on electropolymerized poly(pyrrole-nitrilotriacetic) acid film and a new aptamer functionalized by a pentahistidine peptide for the quantification of bisphenol A. A surface coverage of antibisphenol A aptamer of 1.84 × 10(-10) mol cm(-2) was estimated from the electrochemical signal of the [Ru(III)(NH3)6](3+) complex bound by electrostatic interactions onto the aptamer-modified electrode. The binding of bisphenol A onto the polymer film was successfully characterized by electrochemical methods as square wave voltammetry and electrochemical impedance spectroscopy measurements. The designed label-free impedimetric aptasensor displayed a wide linear range from 10(-11) to 10(-6) mol L(-1) with a sensitivity of 372 Ω per unit of log of concentration and an excellent specificity toward interfering agents such as 4,4'-dihydroxybiphenyl and bisphenol P. PMID:27332710

  2. Quantum Monte Carlo for the x-ray absorption spectrum of pyrrole at the nitrogen K-edge

    SciTech Connect

    Zubarev, Dmitry Yu.; Austin, Brian M.; Lester, William A. Jr.

    2012-04-14

    Fixed-node diffusion Monte Carlo (FNDMC) is used to simulate the x-ray absorption spectrum of a gas-phase pyrrole molecule at the nitrogen K-edge. Trial wave functions for core-excited states are constructed from ground-state Kohn-Sham determinants substituted with singly occupied natural orbitals from configuration interaction with single excitations calculations of the five lowest valence-excited triplet states. The FNDMC ionization potential (IP) is found to lie within 0.3 eV of the experimental value of 406.1 {+-} 0.1 eV. The transition energies to anti-bonding virtual orbitals match the experimental spectrum after alignment of IP values and agree with the existing assignments.

  3. Novel Octahydropyrrolo[3,4-c]pyrroles Are Selective Orexin-2 Antagonists: SAR Leading to a Clinical Candidate.

    PubMed

    Letavic, Michael A; Bonaventure, Pascal; Carruthers, Nicholas I; Dugovic, Christine; Koudriakova, Tatiana; Lord, Brian; Lovenberg, Timothy W; Ly, Kiev S; Mani, Neelakandha S; Nepomuceno, Diane; Pippel, Daniel J; Rizzolio, Michele; Shelton, Jonathan E; Shah, Chandra R; Shireman, Brock T; Young, Lana K; Yun, Sujin

    2015-07-23

    The preclinical characterization of novel octahydropyrrolo[3,4-c]pyrroles that are potent and selective orexin-2 antagonists is described. Optimization of physicochemical and DMPK properties led to the discovery of compounds with tissue distribution and duration of action suitable for evaluation in the treatment of primary insomnia. These selective orexin-2 antagonists are proven to promote sleep in rats, and this work ultimately led to the identification of a compound that progressed into human clinical trials for the treatment of primary insomnia. The synthesis, SAR, and optimization of the pharmacokinetic properties of this series of compounds as well as the identification of the clinical candidate, JNJ-42847922 (34), are described herein. PMID:26087021

  4. A disposable, reagentless, third-generation glucose biosensor based on overoxidized poly(pyrrole)/tetrathiafulvalene-tetracyanoquinodimethane composite.

    PubMed

    Palmisano, Francesco; Zambonin, Pier Giorgio; Centonze, Diego; Quinto, Maurizio

    2002-12-01

    A disposable glucose biosensor based on glucose oxidase immobilized on tetrathiafulvalene-tetracyanoquinodimethane (ITF-TCNQ) conducting organic salt synthesized in situ onto an overoxidized poly(pyrrole) (PPy(ox).) film is described. The TIF-TCNQ crystals grow through the nonconducting polypyrrole film (ensuring electrical connection to the underlying Pt electrode) and emerge from the film forming a treelike structure. The PPy(ox) film prevents the interfering substances from reaching the electrode surface. The sensor behavior can be modeled by assuming a direct reoxidation of the enzyme at the surface of the TTF-TCNQ crystals. A heterogeneous rate constant around 10(-6) - 10(-7) cm s(-1) has been estimated. The biosensor is nearly oxygen- and interference-free and when integrated in a flow injection system displays a remarkable sensitivity (70 nA/mM) and stability. PMID:12498183

  5. Large area in situ fabrication of poly(pyrrole)-nanowires on flexible thermoplastic films using nanocontact printing

    NASA Astrophysics Data System (ADS)

    Garcia-Cruz, Alvaro; Lee, Michael; Marote, Pedro; Zine, Nadia; Sigaud, Monique; Bonhomme, Anne; Pruna, Raquel; Lopez, Manuel; Bausells, Joan; Jaffrezic, Nicole; Errachid, Abdelhamid

    2016-08-01

    Highly efficient nano-engineering tools will certainly revolutionize the biomedical and sensing devices research and development in the years to come. Here, we present a novel high performance conducting poly(pyrrole) nanowires (PPy-NW) patterning technology on thermoplastic surfaces (poly(ethylene terephthalate (PETE), poly(ethylene 2,6-naphthalate (PEN), polyimide (PI), and cyclic olefin copolymer) using nanocontact printing and controlled chemical polymerization (nCP-CCP) technique. The technique uses a commercial compact disk as a template to produce nanopatterned polydimethylsiloxane (PDMS) stamps. The PDMS nanopatterned stamp was applied to print the PPy-NWs and the developed technology of nCP-CCP produced 3D conducting nanostructures. This new and very promising nanopatterning technology was achieved in a single step and with a low cost of fabrication over large areas.

  6. The development of conductive surfaces by a diffusion-limited in situ polymerization of pyrrole in solfonated polystyrene ionomers

    SciTech Connect

    De Jesus, M.C.; Weiss, R.A.

    1996-10-01

    Surface conductive polymer was developed by in situ oxidative polymerization of pyrrole in lightly sulfonated polystyrene ionomers (SPS) using a chemical oxidative process. The polymerization only occurred where the monomer and FeCl{sub 3} oxidizing agent could mutually diffuse which resulted in a reaction confined to a surface layer of the host polymer. The amount of PPy incorporated during the polymerization as well as the surface conductivity attained were function of the sulfonation level. The mechanical properties of the composite were significantly improved above Tg, which is believed to be a combination of two effects: formation of a physical network due to intermolecular interactions between the two polymers and mechanical reinforcement due to the rigidity of the PPy.

  7. Hemispherand-Strapped Calix[4]pyrrole: An Ion-pair Receptor for the Recognition and Extraction of Lithium Nitrite.

    PubMed

    He, Qing; Zhang, Zhan; Brewster, James T; Lynch, Vincent M; Kim, Sung Kuk; Sessler, Jonathan L

    2016-08-10

    The hemispherand-strapped calix[4]pyrrole (1) acts as an ion pair receptor that exhibits selectivity for lithium salts. In organic media (CD2Cl2 and CD3OD, v/v, 9:1), receptor 1 binds LiCl with high preference relative to NaCl, KCl, and RbCl. DFT calculations provided support for the observed selectivity. Single crystal structures of five different lithium ion-pair complexes of 1 were obtained. In the case of LiCl, a single bridging water molecule between the lithium cation and chloride anion was observed, while tight contact ion pairs were observed in the case of the LiBr, LiI, LiNO3, and LiNO2 salts. Receptor 1 proved effective as an extractant for LiNO2 under both model solid-liquid and liquid-liquid extraction conditions. PMID:27442768

  8. Metal-Free, Multicomponent Synthesis of Pyrrole-Based π-Conjugated Polymers from Imines, Acid Chlorides, and Alkynes.

    PubMed

    Kayser, Laure V; Vollmer, Moritz; Welnhofer, Merve; Krikcziokat, Hanna; Meerholz, Klaus; Arndtsen, Bruce A

    2016-08-24

    Multicomponent coupling reactions (MCRs) are becoming increasingly used in the synthesis of macromolecules, as they can allow the rapid generation of libraries of materials as a method to tune properties. MCRs could prove particularly useful in the synthesis of π-conjugated polymers in which structural changes are necessary for fine-tuning of electronic properties. We describe here the first metal-free multicomponent approach to conjugated polymers. This reaction exploits the coupling of imines, acid chlorides, and (catechyl)PPh to generate phospha-münchnone-containing polymers, which can be converted to poly(pyrroles) via cycloaddition. The platform allows for the efficient synthesis of families of high molecular weight polymers in one step from readily available monomers. PMID:27471822

  9. A role of nanotube dangling pyrrole and oxygen functions in the electrochemical synthesis of polypyrrole/MWCNTs hybrid materials

    NASA Astrophysics Data System (ADS)

    Krukiewicz, Katarzyna; Herman, Artur P.; Turczyn, Roman; Szymańska, Katarzyna; Koziol, Krzysztof K. K.; Boncel, Sławomir; Zak, Jerzy K.

    2014-10-01

    The effect of the functionalization of multi-walled carbon nanotubes (MWCNTs) on the process of electrochemical co-deposition of MWCNTs and polypyrrole (PPy), as well as the morphology of obtained composites have been demonstrated. As the nanotube components of the hybrids, three types of MWCNT were used, namely c-CVD derived (pristine) MWCNTs, their oxidized counterparts MWCNT-Ox and pyrrole-modified MWCNT-Py. The stability of pristine and functionalized MWCNTs (f-MWCNT) dispersions in tetrahydrofuran and water was studied together with the description of the process of formation PPy/(f-)MWCNT hybrid materials via electrochemical co-deposition. The structural and morphological properties of the hybrids were characterized by Raman spectroscopy, scanning electron microscopy and atomic force microscopy revealing substantial differences among hybrid materials in their surface morphology and the influence of MWCNT functionalization on the orientation of growing PPy chains.

  10. Synthesis, characterization, molecular docking and biological studies of self assembled transition metal dithiocarbamates of substituted pyrrole-2-carboxaldehyde.

    PubMed

    Nami, Shahab A A; Ullah, Irfan; Alam, Mahboob; Lee, Dong-Ung; Sarikavakli, Nursabah

    2016-07-01

    A series of self assembled 3d transition metal dithiocarbamate, M(pdtc) [where M=Mn(II), Fe(II), Co(II), Ni(II) and Cu(II)] have been synthesized and spectroscopically characterized. The bidentate dithiocarbamate ligand Na2pdtc (Disodium-1,4-phenyldiaminobis (pyrrole-1-sulfino)dithioate) was prepared by insertion reaction of carbondisulfide with Schiff base, N,N'-bis-(1H-pyrrol-2-ylmethylene)-benzene-1,4-diamine (L1) in basic medium. The simple substitution reaction between the metal halide and Na2pdtc yielded the title complexes in moderate yields. However, the in situ procedure gives high yield with the formation of single product as evident by TLC. Elemental analysis, IR, (1)H and (13)C NMR spectra, UV-vis., magnetic susceptibility and conductance measurements were done to characterize the complexes, M(pdtc). All the evidences suggest that the complexes have tetrahedral geometry excepting Cu(II) which is found to be square planar. A symmetrical bidentate coordination of the dithiocarbamato moiety has been observed in all the complexes. The conductivity data show that the complexes are non-electrolyte in nature. The anti-oxidant activity of the ligand, Na2pdtc and its transition metal complexes, M(pdtc) have been carried out using DPPH and Cu(pdtc) was found to be most effective. The anti-microbial activity of the Na2pdtc and M(pdtc) complexes have been carried out and on this basis the molecular docking study of the most effective complex, Cu(pdtc) has also been reported. PMID:27197060

  11. Differential Effects of Etomidate and its Pyrrole Analogue Carboetomidate on the Adrenocortical and Cytokine Responses to Endotoxemia

    PubMed Central

    Pejo, Ervin; Feng, Yan; Chao, Wei; Cotten, Joseph F; Ge, Ri Le; Raines, Douglas E

    2011-01-01

    Objective We developed a novel pyrrole analogue of etomidate, (R)-ethyl 1-(1-phenylethyl)-1H-pyrrole-2-carboxylate (carboetomidate), which retains etomidate’s desirable anesthetic and hemodynamic properties but lacks its potent inhibitory affect on adrenocorticotropic hormone-stimulated steroid synthesis. The objective of this study was to test the hypothesis that in contrast to etomidate, carboetomidate neither suppresses the adrenocortical response to endotoxemia nor enhances the accompanying production of pro-inflammatory cytokines. Design Animal study Setting University research laboratory Subjects Male Sprague-Dawley rats Interventions For both single and multiple anesthetic dose studies, rats were injected with Escherichia coli lipopolysaccharide immediately followed by a hypnotic dose of etomidate, carboetomidate or vehicle alone (dimethyl sulfoxide) as a control. For single dose studies, no additional anesthetic (or vehicle) was administered. For multiple anesthetic dose studies, additional doses of anesthetic (or vehicle) were administered every 15 min for a total of eight anesthetic (or vehicle) doses. Measurements and Main Results Plasma adrenocorticotropic hormone, corticosterone, and cytokine concentrations were measured before lipopolysaccharide administration and intermittently throughout the 5 hour experiment. In single anesthetic dose studies, plasma adrenocorticotropic hormone and cytokine concentrations were not different at any time point among the etomidate, carboetomidate, and vehicle groups whereas plasma corticosterone concentrations were briefly (60–120 min) reduced in the etomidate group. In multiple anesthetic dose studies, plasma corticosterone concentrations were persistently lower and peak plasma IL-1β and IL-6 concentrations were higher in the etomidate group versus the carboetomidate and control groups. Peak plasma IL-10 concentrations were similarly elevated in the etomidate and carboetomidate groups versus the control group

  12. Excited state non-adiabatic dynamics of pyrrole: A time-resolved photoelectron spectroscopy and quantum dynamics study

    SciTech Connect

    Wu, Guorong; Neville, Simon P.; Worth, Graham A.; Schalk, Oliver; Sekikawa, Taro; Ashfold, Michael N. R.; Stolow, Albert

    2015-02-21

    The dynamics of pyrrole excited at wavelengths in the range 242-217 nm are studied using a combination of time-resolved photoelectron spectroscopy and wavepacket propagations performed using the multi-configurational time-dependent Hartree method. Excitation close to the origin of pyrrole’s electronic spectrum, at 242 and 236 nm, is found to result in an ultrafast decay of the system from the ionization window on a single timescale of less than 20 fs. This behaviour is explained fully by assuming the system to be excited to the A{sub 2}(πσ{sup ∗}) state, in accord with previous experimental and theoretical studies. Excitation at shorter wavelengths has previously been assumed to result predominantly in population of the bright A{sub 1}(ππ{sup ∗}) and B{sub 2}(ππ{sup ∗}) states. We here present time-resolved photoelectron spectra at a pump wavelength of 217 nm alongside detailed quantum dynamics calculations that, together with a recent reinterpretation of pyrrole’s electronic spectrum [S. P. Neville and G. A. Worth, J. Chem. Phys. 140, 034317 (2014)], suggest that population of the B{sub 1}(πσ{sup ∗}) state (hitherto assumed to be optically dark) may occur directly when pyrrole is excited at energies in the near UV part of its electronic spectrum. The B{sub 1}(πσ{sup ∗}) state is found to decay on a timescale of less than 20 fs by both N-H dissociation and internal conversion to the A{sub 2}(πσ{sup ∗}) state.

  13. Crystal structure of 3-ferrocenyl-1-phenyl-1H-pyrrole, [Fe(η5-C5H4 cC4H3 NPh)(η5-C5H5)

    PubMed Central

    Pfaff, Ulrike; Korb, Marcus; Lang, Heinrich

    2016-01-01

    The mol­ecular structure of the title compound, [Fe(C5H5)(C15H12N)], consists of a ferrocene moiety with an N-phenyl­pyrrole heterocycle bound to one cyclo­penta­dienyl ring. The 1,3-disubstitution of the pyrrole results in an L-shaped arrangement of the mol­ecule with plane inter­sections of 2.78 (17)° between the pyrrole and the N-bonded phenyl ring and of 8.17 (18)° between the pyrrole and the cyclo­penta­dienyl ring. In the crystal, no remarkable inter­molecular inter­actions are observed PMID:26870594

  14. Cadmium(II) and zinc(II) complexes of pyrrole-appended oxacarbaporphyrin: a side-on coordination mode of O-confused carbaporphyrin.

    PubMed

    Pawlicki, Miłosz; Latos-Grazyński, Lechosław; Szterenberg, Ludmiła

    2005-12-26

    A pyrrole adduct of 5,20-diphenyl-10,15-di(p-tolyl)-2-oxa-21-carbaporphyrin [(H,pyr)OCPH]H(2) reacted with sodium ethanolate to yield 5,20-diphenyl-10,15-di(p-tolyl)-3-ethoxy-3-(2'-pyrrol)-2-oxa-21-carbaporphyrin [(EtO,pyr)OCPH]H(2). Subsequently, "true" O-confused oxaporphyrin with a pendant pyrrole ring [(pyr)OCPH]H was formed by the addition of acid to [(EtO,pyr)OCPH]H(2), which triggered an ethanol elimination. In the course of this process, the tetrahedral-trigonal rearrangements originated at the C(3) atom. Insertion of zinc(II), cadmium(II), and nickel(II) into [(pyr)OCPH]H yielded [(pyr)OCPH]Zn(II)Cl, [(pyr)OCPH]Cd(II)Cl, and [(pyr)OCP]Ni(II). The formation of [(pyr)OCP]Ni(II) was accompanied by the C(21)H dehydrogenation step. The nickel(II) ion of [(pyr)OCP]Ni(II), coordinated to a dianionic macrocyclic ligand, is bound by three pyrrolic nitrogens and a trigonally hybridized C(21) atom of the inverted furan. The pyrrole-appended O-confused carbaporphyrin acts as a monoanionic ligand toward zinc(II) and cadmium(II) cations. Three nitrogen atoms and the C(21)H fragment of the inverted furan occupy equatorial positions. In (1)H NMR spectra, the unique inner C(21)H resonances of the inverted furan ring are located at 0.15 ppm for [(pyr)OCPH]Zn(II)Cl, and at 0.21 ppm for [(pyr)OCPH]Cd(II)Cl. The proximity of the furan fragment to the metal ion induces direct scalar couplings between the spin-active nucleus of the metal ((111/113)Cd) and the adjacent (1)H nucleus. The interaction of the metal ion and C(21)H was also reflected by significant changes in carbon chemical shifts ([(pyr)OCPH]Zn(II)Cl, 78.3 ppm; [(pyr)OCPH]Cd(II)Cl, 81.4 ppm; the free base, 101.3 ppm). The density functional theory (DFT) has been applied to model the molecular structures of zinc(II) and cadmium(II) complexes of O-confused oxaporphyrin with an appended pyrrole ring. The Cd...C(21) distance in the optimized structure exceeds the typical Cd-C bond lengths, but is much shorter than the

  15. 3-(Dicyanomethylidene)indan-1-one-Functionalized Calix[4]arene-Calix[4]pyrrole Hybrid: An Ion-Pair Sensor for Cesium Salts.

    PubMed

    Yeon, Yerim; Leem, Soojung; Wagen, Corin; Lynch, Vincent M; Kim, Sung Kuk; Sessler, Jonathan L

    2016-09-01

    A chromogenic calix[4]arene-calix[4]pyrrole hybrid ion pair receptor bearing an indane substituent at a β-pyrrolic position has been prepared. On the basis of solution-phase UV-vis spectroscopic analysis and (1)H NMR spectroscopic studies carried out in 10% methanol in chloroform, receptor 1 is able to bind only cesium ion pairs (e.g., CsF, CsCl, and CsNO3) but not the constituent cesium cation (as its perchlorate salt) or the F(-), Cl(-), or NO3(-) anions (as the tetrabutylammonium salts). It thus displays rudimentary AND logic gate behavior. Receptor 1 shows a colorimetric response to cesium ion pairs under conditions of solid-liquid (nitrobenzene) and liquid-liquid (D2O-nitrobenzene-d5) extraction. PMID:27533478

  16. Deproto-metallation of N-arylated pyrroles and indoles using a mixed lithium–zinc base and regioselectivity-computed CH acidity relationship

    PubMed Central

    Messaoud, Mohamed Yacine Ameur; Hedidi, Madani; Derdour, Aïcha; Chevallier, Floris; Ivashkevich, Oleg A; Matulis, Vadim E; Roisnel, Thierry; Dorcet, Vincent

    2015-01-01

    Summary The synthesis of N-arylated pyrroles and indoles is documented, as well as their functionalization by deprotonative metallation using the base in situ prepared from LiTMP and ZnCl2·TMEDA (1/3 equiv). With N-phenylpyrrole and -indole, the reactions were carried out in hexane containing TMEDA which regioselectively afforded the 2-iodo derivatives after subsequent iodolysis. With pyrroles and indoles bearing N-substituents such as 2-thienyl, 3-pyridyl, 4-methoxyphenyl and 4-bromophenyl, the reactions all took place on the substituent, at the position either adjacent to the heteroatom (S, N) or ortho to the heteroatom-containing substituent (OMe, Br). The CH acidities of the substrates were determined in THF solution using the DFT B3LYP method in order to rationalize the experimental results. PMID:26425204

  17. In situ intercalative polymerization of pyrrole in FeOCl: a new class of layered, conducting polymer-inorganic hybrid materials

    SciTech Connect

    Kanatzidis, M.G.; Tonge, L.M.; Marks, T.J.; Marcy, H.O.; Kannewurf, C.R.

    1987-06-10

    The authors report here a structural form of polypyrrole in which polymerization and intercalation of pyrrole are brought about within the constrained van der Waals gap of a layered inorganic solid (FeOCl). Oxidative intercalation of organic molecules with concomitant reduction of the inorganic lattice is well established for FeOCl, and in the present case affords a novel class of conductive polymer-inorganic hybrid materials. The reaction of FeOCl with excess neat pyrrole (60/sup 0/C) yields a material analyzing as (Ppy)/sub 0.34/FeOCl. X-ray diffraction measurements reveal high crystallinity and an increase in FeOCl interlayer (b-axis) spacing from 7.980 to 13.210 A.

  18. Selective synthesis of substituted pyrrole-2-phosphine oxides and -phosphonates from 2H-azirines and enolates from acetyl acetates and malonates.

    PubMed

    Palacios, Francisco; Ochoa de Retana, Ana M; Vélez del Burgo, Ander

    2011-11-18

    A simple and efficient selective synthesis of 1H-pyrrole-2-phosphine oxides 3 and -phosphonates 7 by addition of enolates derived from acetyl acetates to 2H-azirinylphosphine oxide 1 and -phosphonate 6 is reported. Nucleophilic addition of enolates derived from diethyl malonate to 2H-azirines 1 and 6 led to the formation of functionalized 2-hydroxy-1H-pyrrole-5-phosphine oxide 9 and -phosphonate 10, while vinylogous α-aminoalkylphosphine oxides 14 and -phosphonate 15 may be obtained from azirines and the enolate derived from diethyl 2-phenylmalonate. Ring closure of vinylogous derivatives 14 and 15 in the presence of base led to the formation of 1,5-dihydro-3-pyrrolin-2-ones containing a phosphine oxide 17 or a phosphonate group 18. PMID:21999212

  19. Stereoselective self-sorting in the self-assembly of a Phe-Phe extended guanidiniocarbonyl pyrrole carboxylate zwitterion: formation of two diastereomeric dimers with significantly different stabilities.

    PubMed

    Rodler, Fabian; Sicking, Wilhelm; Schmuck, Carsten

    2011-07-28

    The 'dipeptide extended' guanidiniocarbonyl pyrrole carboxylate zwitterion GCP-Phe-Phe 1 forms stable dimers in DMSO. However, dimerization is highly stereoselective. Only homochiral dimers are formed and the (L,L)·(L,L) dimer (K(dim) > 10(5) M(-1)) is significantly more stable by a factor of 10(3) than the diastereomeric (D,L)·(D,L) dimer (K(dim) = 120 M(-1)). PMID:21670799

  20. Synthesis, characterization and computational study on ethyl 4-(3-Furan-2yl-acryloyl)-3,5-dimethyl-1H-pyrrole-2-carboxylate

    NASA Astrophysics Data System (ADS)

    Singh, R. N.; Rawat, Poonam; Sahu, Sangeeta

    2014-11-01

    As part of study on pyrrole derivatives, we have synthesized a pyrrole chalcone derivative: ethyl 4-(3-Furan-2yl-acryloyl)-3,5-dimethyl-1H-pyrrole-2-carboxylate (EFADPC) by aldol condensation of ethyl 3, 5-dimethyl-4-actyl-1H-pyrrole-2-carboxylate with furan-2-carbaldehyde in the presence of strong hydroxyl base as catalyst. The product EFADPC has been confirmed by spectroscopic (FT-IR, 1H NMR, and UV-visible) analyses. Quantum chemical calculation also provides good correlation with experimental data. The molecular electrostatic potential surface (MEP), natural bond orbital interactions (NBO), electronic descriptors, quantum theory of atoms' in molecules (QTAIM) and experimental FT-IR spectrum have been used to predict the sites and nature of interactions which indicate that the dimer formation with multiple interactions through Nsbnd H···O and Csbnd H···O. The vibrational analysis shows red shifts in νNsbnd H and νCdbnd O as result of dimer formation. The binding energy of dimer is calculated as 13.82, 15.24 kcal/mol using DFT, QTAIM analysis, respectively. The result of ellipticity confirms the existence of resonance assisted hydrogen bonds (RAHB) in dimer. The MEP and local reactivity descriptors analyses have been performed and the results indicate that carbonyl carbon and β-carbon of chalcone frame have been prone to nucleophilic attack and lead to large number of heterocyclic compounds such as oxirane, oxazoles, pyrazoles, pyridines, pyrimidines, and pyran.

  1. Highly enantioselective Friedel-Crafts alkylation of indoles and pyrrole with β,γ-unsaturated α-ketoesters catalyzed by heteroarylidene-tethered bis(oxazoline) copper complexes.

    PubMed

    Liu, Lei; Ma, Hongli; Xiao, Yumei; Du, Fengpei; Qin, Zhaohai; Li, Nan; Fu, Bin

    2012-09-25

    The simple and cheap chiral catalyst, heteroarylidene-tethered Ph-bis(oxazoline)-Cu(OTf)(2), can efficiently catalyze the asymmetric F-C alkylation of indoles and pyrrole with β,γ-unsaturated α-ketoesters. The 3-indolyl adducts were obtained in up to >99% ee. Moreover, the 2-pyrrolyl adducts were achieved in up to 92% ee for the first time. PMID:22875174

  2. α, α', α", α'"-meso-tetrahexyltetramethyl-calix[4]pyrrole: An easy-to-prepare, isomerically pure anion extractant with enhanced solubility in organic solvents

    DOE PAGESBeta

    Williams, Neil J.; Bryantsev, Vyacheslav S.; Custelcean, Radu; Seipp, Charles A.; Moyer, Bruce A.

    2016-01-29

    α, α', α", α'"-meso-Tetrahexyltetramethyl-calix[4]pyrrole is easily obtained as a single diastereomer in a one-pot reaction. It exhibits enhanced solubility in organic solvents, including aliphatic solvents, relative to its parent meso-octamethylcalix[4]pyrrole (1). Somewhat surprisingly, the tetrahexyl derivative 2 complexes with tributylmethylammonium chloride in chloroform more strongly than does 1 as shown by NMR titrations. However, 1 and 2 exhibit comparable complexation strength in extraction experiments, the difference between the NMR and extraction results being attributed to the effect of organic-phase water in the extraction systems. Mass-action analysis indicates the formation of the predominant complex TBMA+(1 or 2)Cl– in both NMR andmore » extraction systems, and equilibrium constants are reported. x-Ray crystal structures were obtained for the free ligand 2 and its complex with tetramethylammonium chloride. In addition, the free ligand crystallises in the 1,3-alt conformation with equatorial hexyl arms. In the chloride complex with 2 in its cone conformation, the hexyl arms adopt an axial orientation, enveloping the anion. DFT calculations show this binding conformation to be the most stable, mostly owing to destabilising steric interactions involving the pyrrole C–H and alkyl C–H groups positioned equatorially.« less

  3. Comparative neurotoxicity and pyrrole-forming potential of 2,5-hexanedione and perdeuterio-2,5-hexanedione in the rat

    SciTech Connect

    DeCaprio, A.P.; Briggs, R.G.; Jackowski, S.J.; Kim, J.C.

    1988-01-01

    2,5-Hexanedione (2,5-HD), the neurotoxic metabolite of n-hexane, reacts with protein amines to form alkylpyrrole adducts. Pyrrolylation of neurofilament protein may be the initiating molecular event in 2,5-HD neuropathy. The present study compares the neurotoxic and pyrrole-forming potentials of 2,5-HD with those of perdeuterio-2,5-HD ((D10)-2,5-HD) in the rat. Due to a requirement for C-H bond breaking in the reaction mechanism, the latter derivative was expected to exhibit a primary isotope effect, thus forming the pyrrole at a slower rate. In vitro studies confirmed that (D10)-2,5-HD pyrrolylated protein at only one-third of the initial rate seen with native 2,5-HD. Prolonged incubation resulted in similar pyrrole concentrations with both derivatives. Adult, male Wistar rats were administered daily (5 days/week) ip doses of either 3.5 mmol 2,5-HD or (D10)-2,5-HD/kg/day for 17 days or 2.5 mmol/kg/day for 38 days. At termination, animals administered 2,5-HD and (D10)-2,5-HD exhibited 27 and 8% body weight loss, respectively. Moderate to severe hindlimb paralysis was present in the 2,5-HD groups while only mild effects were seen in (D10)-2,5-HD-dosed rats. Neuropathological changes were prominent in spinal cord sections from 2,5-HD-treated animals, while no effects were present in rats given the deuterated derivative. Pyrrole adduct concentrations in serum and axonal cytoskeletal proteins from 2,5-HD-treated animals were two- to threefold higher than in rats given equimolar doses of (D10)-2,5-HD. Levels of covalent crosslinking of axonal cytoskeletal proteins (assessed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis) appeared to correlate with pyrrole concentrations. Tissue concentrations of each diketone isomer were not significantly different, indicating similar uptake of native and deuterated 2,5-HD.

  4. Sub-10 nm Platinum Nanocrystals with Size and Shape Control: Catalytic Study for Ethylene and Pyrrole Hydrogenation

    SciTech Connect

    Tsung, Chia-Kuang; Kuhn, John N.; Huang, Wenyu; Aliaga, Cesar; Hung, Ling-I; Somorjai, Gabor A.; Yang, Peidong

    2009-03-02

    Platinum nanocubes and nanopolyhedra with tunable size from 5 to 9 nm were synthesized by controlling the reducing rate of metal precursor ions in a one-pot polyol synthesis. A two-stage process is proposed for the simultaneous control of size and shape. In the first stage, the oxidation state of the metal ion precursors determined the nucleation rate and consequently the number of nuclei. The reaction temperature controlled the shape in the second stage by regulation of the growth kinetics. These well-defined nanocrystals were loaded into MCF-17 mesoporous silica for examination of catalytic properties. Pt loadings and dispersions of the supported catalysts were determined by elemental analysis (ICP-MS) and H2 chemisorption isotherms, respectively. Ethylene hydrogenation rates over the Pt nanocrystals were independent of both size and shape and comparable to Pt single crystals. For pyrrole hydrogenation, the nanocubes enhanced ring-opening ability and thus showed a higher selectivity to n-butylamine as compared to nanopolyhedra.

  5. Nuclear Localization and Gene Expression Modulation by a Fluorescent Sequence-Selective p-Anisyl-benzimidazolecarboxamido Imidazole-Pyrrole Polyamide.

    PubMed

    Kiakos, Konstantinos; Pett, Luke; Satam, Vijay; Patil, Pravin; Hochhauser, Daniel; Lee, Moses; Hartley, John A

    2015-07-23

    Synthetic pyrrole (P)-imidazole (I) containing polyamides can target predetermined DNA sequences and modulate gene expression by interfering with transcription factor binding. We have previously shown that rationally designed polyamides targeting the inverted CCAAT box 2 (ICB2) of the topoisomerase IIα (topo IIα) promoter can inhibit binding of transcription factor NF-Y, re-inducing expression of the enzyme in confluent cells. Here, the A/T recognizing fluorophore, p-anisylbenzimidazolecarboxamido (Hx) was incorporated into the hybrid polyamide HxIP, which fluoresces upon binding to DNA, providing an intrinsic probe to monitor cellular uptake. HxIP targets the 5'-TACGAT-3' sequence of the 5' flank of ICB2 with high affinity and sequence specificity, eliciting an ICB2-selective inhibition/displacement of NF-Y. HxIP is readily taken up by NIH3T3 and A549 cells, and detected in the nucleus within minutes. Exposure to the polyamide at confluence resulted in a dose-dependent upregulation of topo IIα expression and enhanced formation of etoposide-induced DNA strand breaks. PMID:26119998

  6. Maleimides (1 H-pyrrole-2,5-diones) as molecular indicators of anoxygenic photosynthesis in ancient water columns

    NASA Astrophysics Data System (ADS)

    Grice, Kliti; Gibbison, Robert; Atkinson, Jane E.; Schwark, Lorenz; Eckardt, Christian B.; Maxwell, James R.

    1996-10-01

    Maleimides (1 H-pyrrole-2,5-diones), degradation products of photosynthetic tetrapyrrole pigments, have been found for the first time in the polar fraction of the solvent extracts of two marine sediments deposited in restricted basins: Kupferschiefer (Permian) and Serpiano shale (Mid-Triassic). GC and GC—MS analyses of the TBDMS ( tertiary-butyldimethylsilyl) derivatives show a simple component distribution, dominated by Me Et maleimide, mainly of planktonic origin; Me n-Pr and Me i-Bu maleimides, present in low abundance, are thought on structural grounds to be derived from the bacteriochlorophylls c, d, or e of Chlorobiaceae (anoxygenic green sulfur bacteria). This is confirmed for Kupferschiefer by isotope ratio monitoring (irm) GCMS which shows them to be enriched in 13C as a result of their photosynthetic carbon assimilation, which takes place by the reversed tricarboxylic acid (TCA) cycle. The structurally more specific Me i-Bu maleimide is, however, slightly more enriched in 13C than Me n-Pr maleimide, suggesting that the latter is derived in part from reduction of the C 3-acid substituent at C-17 of phytoplanktonic chlorophyll. These results provide evidence for the existence in both depositional settings of microbial communities containing Chlorobiaceae. In turn, this indicates that there must have been periods when the water column was highly stratified and anoxia extended into the zone of light penetration.

  7. Pyrrole Hydrogenation over Rh(111) and Pt(111) Single-Crystal Surfaces and Hydrogenation Promotion Mediated by 1-Methylpyrrole: A Kinetic and Sum-Frequency Generation Vibrational Spectroscopy Study

    SciTech Connect

    Kliewer, Christopher J.; Bieri, Marco; Somorjai, Gabor A.

    2008-03-04

    Sum-frequency generation (SFG) surface vibrational spectroscopy and kinetic measurements using gas chromatography have been used to study the adsorption and hydrogenation of pyrrole over both Pt(111) and Rh(111) single-crystal surfaces at Torr pressures (3 Torr pyrrole, 30 Torr H{sub 2}) to form pyrrolidine and the minor product butylamine. Over Pt(111) at 298 K it was found that pyrrole adsorbs in an upright geometry cleaving the N-H bond to bind through the nitrogen evidenced by SFG data. Over Rh(111) at 298 K pyrrole adsorbs in a tilted geometry relative to the surface through the p-aromatic system. A pyrroline surface reaction intermediate, which was not detected in the gas phase, was seen by SFG during the hydrogenation over both surfaces. Significant enhancement of the reaction rate was achieved over both metal surfaces by adsorbing 1-methylpyrrole before reaction. SFG vibrational spectroscopic results indicate that reaction promotion is achieved by weakening the bonding between the N-containing products and the metal surface because of lateral interactions on the surface between 1-methylpyrrole and the reaction species, reducing the desorption energy of the products. It was found that the ring-opening product butylamine was a reaction poison over both surfaces, but this effect can be minimized by treating the catalyst surfaces with 1-methylpyrrole before reaction. The reaction rate was not enhanced with elevated temperatures, and SFG suggests desorption of pyrrole at elevated temperatures.

  8. Sequence-selective single-molecule alkylation with a pyrrole-imidazole polyamide visualized in a DNA nanoscaffold.

    PubMed

    Yoshidome, Tomofumi; Endo, Masayuki; Kashiwazaki, Gengo; Hidaka, Kumi; Bando, Toshikazu; Sugiyama, Hiroshi

    2012-03-14

    We demonstrate a novel strategy for visualizing sequence-selective alkylation of target double-stranded DNA (dsDNA) using a synthetic pyrrole-imidazole (PI) polyamide in a designed DNA origami scaffold. Doubly functionalized PI polyamide was designed by introduction of an alkylating agent 1-(chloromethyl)-5-hydroxy-1,2-dihydro-3H-benz[e]indole (seco-CBI) and biotin for sequence-selective alkylation at the target sequence and subsequent streptavidin labeling, respectively. Selective alkylation of the target site in the substrate DNA was observed by analysis using sequencing gel electrophoresis. For the single-molecule observation of the alkylation by functionalized PI polyamide using atomic force microscopy (AFM), the target position in the dsDNA (∼200 base pairs) was alkylated and then visualized by labeling with streptavidin. Newly designed DNA origami scaffold named "five-well DNA frame" carrying five different dsDNA sequences in its cavities was used for the detailed analysis of the sequence-selectivity and alkylation. The 64-mer dsDNAs were introduced to five individual wells, in which target sequence AGTXCCA/TGGYACT (XY = AT, TA, GC, CG) was employed as fully matched (X = G) and one-base mismatched (X = A, T, C) sequences. The fully matched sequence was alkylated with 88% selectivity over other mismatched sequences. In addition, the PI polyamide failed to attach to the target sequence lacking the alkylation site after washing and streptavidin treatment. Therefore, the PI polyamide discriminated the one mismatched nucleotide at the single-molecule level, and alkylation anchored the PI polyamide to the target dsDNA. PMID:22320236

  9. Ion-regulated allosteric binding of fullerenes (C60 and C70) by tetrathiafulvalene-calix[4]pyrroles.

    PubMed

    Davis, Christina M; Lim, Jong Min; Larsen, Karina R; Kim, Dong Sub; Sung, Young Mo; Lyons, Dani M; Lynch, Vincent M; Nielsen, Kent A; Jeppesen, Jan O; Kim, Dongho; Park, Jung Su; Sessler, Jonathan L

    2014-07-23

    The effect of ionic species on the binding of fullerenes (C60 and C70) by tetrathiafulvalene-calix[4]pyrrole (TTF-C4P) receptors and the nature of the resulting supramolecular complexes (TTF-C4P + fullerene + halide anion + tetraalkylammonium cation) was studied in the solid state through single crystal X-ray diffraction methods and in dichloromethane solution by means of continuous variation plots and UV-vis spectroscopic titrations. These analyses revealed a 1:1 stoichiometry between the anion-bound TTF-C4Ps and the complexed fullerenes. The latter guests are bound within the bowl-like cup of the C4P in a ball-and-socket binding mode. The interactions between the TTF-C4P receptors and the fullerene guests are highly influenced by both the nature of halide anions and their counter tetraalkylammonium cations. Three halides (F(-), Cl(-), and Br(-)) were studied. All three potentiate the binding of the two test fullerenes by inducing a conformational change from the 1,3-alternate to the cone conformer of the TTF-C4Ps, thus acting as positive heterotropic allosteric effectors. For a particular halide anion, the choice of tetraalkylammonium salts serves to modulate the strength of the TTF-C4P-fullerene host-guest binding interactions and, in conjunction with variations in the halide anion, can be exploited to alter the inherent selectivity of the host for a given fullerene. Differences in binding are reflected in the excited state optical properties. Overall, the present four-component system provides an illustration of how host-guest binding events involving appropriately designed artificial receptors can be fine-tuned via the addition of simple ionic species as allosteric modulators. PMID:24967663

  10. Monocrotaline pyrrole-induced changes in angiotensin-converting enzyme activity of cultured pulmonary artery endothelial cells.

    PubMed Central

    Hoorn, C. M.; Roth, R. A.

    1993-01-01

    1. Changes in the structural and functional integrity of endothelium have been recognized as relatively early features of delayed and progressive pulmonary vascular injury caused by the pyrrolizidine alkaloid, monocrotaline (MCT). Although a number of investigators have evaluated angiotensin-converting enzyme (ACE) activity in the lungs of rats treated with MCT, the exact nature of changes in activity of this enzyme and the role they may play in MCT pneumotoxicity remain controversial. 2. We examined the direct effects of monocrotaline pyrrole (MCTP), a toxic metabolite of MCT, on cultured endothelial cell ACE activity. Post-confluent monolayers of porcine or bovine pulmonary artery endothelial cells (PECs or BECs, respectively) were treated with a single administration of MCTP at time 0; then they were examined for their ability to degrade the synthetic peptide, [3H]-benzoyl-Phe-Ala-Pro. 3. In PECs, which are relatively insensitive to the direct cytolytic effects of MCTP, monolayer ACE activity was unchanged initially but gradually decreased within 4 days after treatment with a high concentration of MCTP (150 microM). This decrease was transient, and PEC monolayer ACE activity returned to the control value by 10 days post treatment. 4. BEC monolayer ACE activity was also unchanged initially but rapidly declined within 4 days after MCTP treatment and remained depressed throughout the post treatment period. BECs were quite sensitive to the cytolytic effects of MCTP and the decline in ACE activity occurred coincident with the decrease in monolayer cellularity and appearance of marked cytotoxicity. 5. We conclude that high concentrations of MCTP decrease endothelial ACE activity.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:8242234

  11. Micro- to nanostructured poly(pyrrole-nitrilotriacetic acid) films via nanosphere templates: applications to 3D enzyme attachment by affinity interactions.

    PubMed

    Cernat, Andreea; Le Goff, Alan; Holzinger, Michael; Sandulescu, Robert; Cosnier, Serge

    2014-02-01

    We report the combination of latex nanosphere lithography with electropolymerization of N-substituted pyrrole monomer bearing a nitrilotriacetic acid (NTA) moiety for the template-assisted nanostructuration of poly(pyrrole-NTA) films and their application for biomolecule immobilization. The electrodes were modified by casting latex beads (100 or 900 nm in diameter) on their surface followed by electropolymerization of the pyrrole-NTA monomer and the subsequent chelation of Cu(2+) ions. The dissolution of the nanobeads leads then to a nanostructured polymer film with increased surface. Thanks to the versatile affinity interactions between the (NTA)Cu(2+) complex and histidine- or biotin-tagged proteins, both tyrosinase and glucose oxidase were immobilized on the modified electrode. Nanostructuration of the polypyrrole via nanosphere lithography (NSL) using 900- and 100-nm latex beads allows an increase in surface concentration of enzymes anchored on the functionalized polypyrrole electrode. The nanostructured enzyme electrodes were characterized by fluorescence microscopy, 3D laser scanning confocal microscopy, and scanning electron microscopy. Electrochemical studies demonstrate the increase in the amount of immobilized biomolecules and associated biosensor performances when achieving NSL compared to conventional polymer formation without bead template. In addition, the decrease in nanobead diameter from 900 to 100 nm provides an enhancement in biosensor performance. Between biosensors based on films polymerized without nanobeads and with 100-nm nanobeads, maximum current density values increase from 4 to 56 μA cm(-2) and from 7 to 45 μA cm(-2) for biosensors based on tyrosinase and glucose oxidase, respectively. PMID:23793398

  12. 3He NMR studies on helium-pyrrole, helium-indole, and helium-carbazole systems: a new tool for following chemistry of heterocyclic compounds.

    PubMed

    Radula-Janik, Klaudia; Kupka, Teobald

    2015-02-01

    The (3)He nuclear magnetic shieldings were calculated for free helium atom and He-pyrrole, He-indole, and He-carbazole complexes. Several levels of theory, including Hartree-Fock (HF), Second-order Møller-Plesset Perturbation Theory (MP2), and Density Functional Theory (DFT) (VSXC, M062X, APFD, BHandHLYP, and mPW1PW91), combined with polarization-consistent pcS-2 and aug-pcS-2 basis sets were employed. Gauge-including atomic orbital (GIAO) calculated (3)He nuclear magnetic shieldings reproduced accurately previously reported theoretical values for helium gas. (3)He nuclear magnetic shieldings and energy changes as result of single helium atom approaching to the five-membered ring of pyrrole, indole, and carbazole were tested. It was observed that (3)He NMR parameters of single helium atom, calculated at various levels of theory (HF, MP2, and DFT) are sensitive to the presence of heteroatomic rings. The helium atom was insensitive to the studied molecules at distances above 5 Å. Our results, obtained with BHandHLYP method, predicted fairly accurately the He-pyrrole plane separation of 3.15 Å (close to 3.24 Å, calculated by MP2) and yielded a sizable (3)He NMR chemical shift (about -1.5 ppm). The changes of calculated nucleus-independent chemical shifts (NICS) with the distance above the rings showed a very similar pattern to helium-3 NMR chemical shift. The ring currents above the five-membered rings were seen by helium magnetic probe to about 5 Å above the ring planes verified by the calculated NICS index. PMID:25228253

  13. Pyrrole-coupled salicylimine-based fluorescence "turn on" probe for highly selective recognition of Zn²⁺ ions in mixed aqueous media: Application in living cell imaging.

    PubMed

    Bhosale, Jitendra; Fegade, Umesh; Bondhopadhyay, Banashree; Kaur, Simanpreet; Singh, Narinder; Basu, Anupam; Dabur, Rajesh; Bendre, Ratnamala; Kuwar, Anil

    2015-06-01

    Cation sensing behaviour of a pyrrole-based derivative (2-hydroxyl 3 methyl 6 isopropyl benzaldehyde}-3,4-dimethyl-1H-pyrrole-2-carbohydrazide (receptor 3) has been explored and is found to be selective towards Zn(2+) over a variety of tested cations. The receptor 3 has shown high selectivity and sensitivity towards Zn(2+) over the other alkali, alkaline earth and transition metal ions. In the presence of Zn(2+), absorption band of receptor 3 has shown the red shift. The sensing behaviour has been suggested to continue via enhancement process which has further been supported by UV-vis absorption and theoretical density functional theory (DFT) calculations indicating the formation of a 1:1 complex between the pyrrole based receptor 3 and Zn(2+). The present work is presenting a highly selective dual channel colorimetric sensor for zinc with great sensitivity. The developed sensor was successfully applied to image intracellular Zn(2+) in living cells. PMID:25707866

  14. Unexpected isocyanide-based three-component bicyclizations for stereoselective synthesis of densely functionalized pyrano[3,4-c]pyrroles

    PubMed Central

    Gao, Qian; Hao, Wen-Juan; Liu, Feng; Wang, Shu-Liang

    2015-01-01

    A novel three-component bicyclization strategy for efficient synthesis of densely functionalized pyrano[3,4-c]pyrroles has been established from readily accessible 3-aroylacrylic acids, dialkyl acetylenedicarboxylates and isocyanides. The reaction pathway involves Huisgen 1,3-dipole formation, Passerini-type reaction, Mumm rearrangement and oxo-Diels–Alder reaction sequence, resulting in continuous multiple bond-forming events including C–N, C–O and C–H bonds to rapidly build up molecular complexity. PMID:26576646

  15. Structure and spectroscopic properties of N,S-coordinating 2-methyl­sulfanyl-N-[(1H-pyrrol-2-yl)methyl­idene]aniline methanol monosolvate

    PubMed Central

    Richards, D. Douglas; Ang, M. Trisha C.; McDonald, Robert; Bierenstiel, Matthias

    2015-01-01

    The reaction of pyrrole-2-carboxaldehyde and 2-(methyl­sulfan­yl)aniline in refluxing methanol gave an olive-green residue in which yellow crystals of the title compound, C12H12N2S·CH3OH, were grown from slow evaporation of methanol at 263 K. In the crystal, hydrogen-bonding inter­actions link the aniline mol­ecule and a nearby methanol solvent mol­ecule. These units are linked by a pair of weak C—H⋯Omethanol interactions, forming inversion dimers consisting of two main molecules and two solvent molecules. PMID:26594390

  16. Palladium-Catalyzed Dynamic Kinetic Asymmetric Transformations of Vinyl Aziridines with Nitrogen Heterocycles: Rapid Access to Biologically Active Pyrroles and Indoles

    PubMed Central

    Trost, Barry M.; Osipov, Maksim; Dong, Guangbin

    2010-01-01

    We report that nitrogen heterocycles can serve as competent nucleophiles in the palladium-catalyzed dynamic kinetic asymmetric alkylation of vinyl aziridines. The resulting alkylated products were obtained with high regio-, chemo-, and enantioselectivity. Both substituted 1H-pyrroles and 1H-indoles were successfully employed to give exclusively the branched N-alkylated products. The synthetic utility of this process was demonstrated by applying this method to the preparation of several medicinal chemistry lead compounds and bromopyrrole alkaloids including longamide B, longamide B methyl ester, hanishin, agesamides A and B, and cyclooroidin. PMID:20949972

  17. Comparison of the resonance-enhanced multiphoton ionization spectra of pyrrole and 2,5-dimethylpyrrole: Building toward an understanding of the electronic structure and photochemistry of porphyrins

    NASA Astrophysics Data System (ADS)

    Beames, Joseph M.; Nix, Michael G. D.; Hudson, Andrew J.

    2009-11-01

    The photophysical properties of porphyrins have relevance for their use as light-activated drugs in cancer treatment and sensitizers in solid-state solar cells. However, the appearance of their UV-visible spectra is usually explained inadequately by qualitative molecular-orbital theories. We intend to gain a better insight into the intense absorption bands, and excited-state dynamics, that make porphyrins appropriate for both of these applications by gradually building toward an understanding of the macrocyclic structure, starting with studies of smaller pyrrolic subunits. We have recorded the (1+1) and (2+1) resonance-enhanced multiphoton ionization (REMPI) spectra of pyrrole and 2,5-dimethylpyrrole between 25 600 cm-1 (390 nm) and 48 500 cm-1 (206 nm). We did not observe a (1+1) REMPI signal through the optically bright B12 (ππ ∗) and A11 (ππ ∗) states in pyrrole due to ultrafast deactivation via conical intersections with the dissociative A12 (πσ ∗) and B11 (πσ ∗) states. However, we did observe (2+1) REMPI through Rydberg states with a dominant feature at 27 432 cm-1 (two-photon energy, 54 864 cm-1) assigned to a 3d←π transition. In contrast, 2,5-dimethylpyrrole has a broad and structured (1+1) REMPI spectrum between 36 000 and 42 500 cm-1 as a result of vibronic transitions to the B12 (ππ ∗) state, and it does not show the 3d←π Rydberg transition via (2+1) REMPI. We have complemented the experimental studies by a theoretical treatment of the excited states of both molecules using time-dependent density functional theory (TD-DFT) and accounted for the contrasting features in the spectra. TD-DFT modeled the photochemical activity of both the optically dark π1σ∗ states (dissociative) and optically bright π1π∗ states well, predicting the barrierless deactivation of the B12 (ππ ∗) state of pyrrole and the bound minimum of the B12 (ππ ∗) state in 2,5-dimethylpyrrole. However, the quantitative agreement between vibronic

  18. 2-[(1-Methyl-1H-pyrrol-2-yl)carbonyl­meth­yl]isoindoline-1,3-dione

    PubMed Central

    Schlosser, Joachim; Schollmeyer, Dieter; Laufer, Stefan; Peifer, Christian

    2009-01-01

    The asymmetric unit of the title compound, C15H12N2O3, contains two almost identical mol­ecules forming an nearly C 2-symmetric dimeric pattern. The dihedral angles between the pyrrole ring and the phthalimide unit are 82.95 (8) and 86.57 (8)° for the two mol­ecules. Within such a dimer, the phthalimide units of the two mol­ecules form a dihedral angle of 1.5 (5)°. PMID:21577840

  19. New pyrrole inhibitors of monoamine oxidase: synthesis, biological evaluation, and structural determinants of MAO-A and MAO-B selectivity.

    PubMed

    La Regina, Giuseppe; Silvestri, Romano; Artico, Marino; Lavecchia, Antonio; Novellino, Ettore; Befani, Olivia; Turini, Paola; Agostinelli, Enzo

    2007-03-01

    A series of new pyrrole derivatives have been synthesized and evaluated for their monoamine oxidase (MAO) A and B inhibitory activity and selectivity. N-Methyl,N-(benzyl),N-(pyrrol-2-ylmethyl)amine (7) and N-(2-benzyl),N-(1-methylpyrrol-2-ylmethyl)amine (18) were the most selective MAO-B (7, SI = 0.0057) and MAO-A (18, SI = 12500) inhibitors, respectively. Docking and molecular dynamics simulations gave structural insights into the MAO-A and MAO-B selectivity. Compound 18 forms an H-bond with Gln215 through its protonated amino group into the MAO-A binding site. This H-bond is absent in the 7/MAO-A complex. In contrast, compound 7 places its phenyl ring into an aromatic cage of the MAO-B binding pocket, where it forms charge-transfer interactions. The slightly different binding pose of 18 into the MAO-B active site seems to be forced by a bulkier Tyr residue, which replaces a smaller Ile residue present in MAO-A. PMID:17256833

  20. A new titanium biofunctionalized interface based on poly(pyrrole-3-acetic acid) coating: proliferation of osteoblast-like cells and future perspectives.

    PubMed

    De Giglio, Elvira; Cometa, Stefania; Calvano, Cosima-Damiana; Sabbatini, Luigia; Zambonin, Pier Giorgio; Colucci, Silvia; Benedetto, Adriana Di; Colaianni, Graziana

    2007-09-01

    In recent years, many procedures based on surface modification have been suggested to improve the biocompatibility and biofunctionality of orthopedic titanium-based implants. In this contest, the development of a new titanium-based biomaterial that could be covalently modified with biologically active molecules (i.e., RGD-peptides, growth factors, etc.) able to improve osteoblasts response was investigated. The strategy followed was based on a preliminary coating of the implant material by an adherent thin polymer film to which bioactive molecules could be grafted exploiting the polymer surface chemical reactivity. In this work, we focused our attention on pyrrole-3-acetic acid (Py-3-acetic), a pyrrole with carboxylic acid substituent, whose electrosynthesis and characterization on titanium substrates were already accomplished and whose potentialities in the design of new biocompatible surfaces are well evident. As first step, the biocompatibility of the electrochemically grown PPy-3-acetic films was investigated performing in vitro tests (adhesion and proliferation) with mouse bone marrow cells. Successively, the availability and reactivity of surface carboxylic groups were tested through the grafting of an aminoacidic residue to PPy-3-acetic films. PMID:17483896

  1. Strikingly different luminescent properties arising from single crystals grown from solution or from the vapor phase in a diketo-pyrrolo-pyrrole analog

    NASA Astrophysics Data System (ADS)

    Imoda, Tomohiko; Mizuguchi, Jin

    2007-10-01

    The title compound di-cyano-pyrrolo-pyrrole (DCPP) is an analog of diketo-pyrrolo-pyrrole (DPP) known as a red pigment on the market. Brilliant orange photoluminescence has been observed in crystals of DCPP recrystallized from solution (crystal I); whereas the luminescence was quite weak in single crystals grown from the vapor phase (crystal II). To elucidate the difference in luminescent properties, a series of structural analysis together with thermal analysis has been carried out on crystals I and II at -180 °C, RT, 150 °C, and 200 °C. However, no difference in structure is recognized between crystals I and II within the precision of the x-ray analysis. Nevertheless, a slight difference in sublimation temperature of about 5° is observed between crystals I and II. Since the sublimation temperature depends on the cohesion in the solid state and the cohesion, in turn, governs the extent of lattice vibration (i.e., nonradiative process), a slight difference in sublimation temperature appears to determine the fraction between the radiative and nonradiative processes in crystals I and II.

  2. Pyrrole-imidazole polyamide-mediated silencing of KCNQ1OT1 expression induces cell death in Wilms' tumor cells.

    PubMed

    Yoshizawa, Shinsuke; Fujiwara, Kyoko; Sugito, Kiminobu; Uekusa, Shota; Kawashima, Hiroyuki; Hoshi, Reina; Watanabe, Yosuke; Hirano, Takayuki; Furuya, Takeshi; Masuko, Takayuki; Ueno, Takahiro; Fukuda, Noboru; Soma, Masayoshi; Ozaki, Toshinori; Koshinaga, Tsugumichi; Nagase, Hiroki

    2015-07-01

    KvDMR (an intronic CpG island within the KCNQ1 gene) is one of the imprinting control regions on human chromosome 11p15.5. Since KvDMR exists within the promoter region of KCNQ1OT1 (antisense transcript of KCNQ1), it is likely that genomic alterations of this region including deletion, paternal uniparental disomy and de-methylation in maternal allele lead to aberrant overexpression of KCNQ1OT1. Indeed, de-methylation of KvDMR accompanied by uncontrolled overexpression of KCNQ1OT1 occurs frequently in Beckwith-Wiedemann syndrome (BWS), and around 10% of BWS patients developed embryonal tumors (Wilms' tumor or hepatoblastoma). These observations strongly suggest that silencing of KCNQ1OT1 expression might suppress its oncogenic potential. In the present study, we designed two pyrrole-imidazole (PI) polyamides, termed PI-a and PI-b, which might have the ability to bind to CCAAT boxes of the KCNQ1OT1 promoter region, and investigated their possible antitumor effect on Wilms' tumor-derived G401 cells. Gel retardation assay demonstrated that PI-a and PI-b specifically bind to their target sequences. Microscopic observations showed the efficient nuclear access of these PI polyamides. Quantitative real-time PCR analysis revealed that the expression level of KCNQ1OT1 was significantly decreased when treated with PI-a and PI-b simultaneously but not with either PI-a or PI-b single treatment. Consistent with these results, the combination of PI-a and PI-b resulted in a significant reduction in viability of G401 cells in a dose-dependent manner. Furthermore, FACS analysis demonstrated that combinatory treatment with PI-a and PI-b induces cell death as compared with control cells. Taken together, our present observations strongly suggest that the combinatory treatment with PI polyamides targeting KCNQ1OT1 might be a novel therapeutic strategy to cure patients with tumors over-expressing KCNQ1OT1. PMID:25998555

  3. Green Synthesis of Ag and Pd Nanospheres, Nanowires, and Nanorods Using Vitamin B 2 : Catalytic Polymerisation of Aniline and Pyrrole

    DOE PAGESBeta

    Nadagouda, Mallikarjuna N.; Varma, Rajender S.

    2008-01-01

    Formore » the first time, we report green chemistry approach using vitamin B 2 in the synthesis of silver (Ag) and palladium (Pd), nanospheres, nanowires, and nanorods at room temperature without using any harmful reducing agents, such as sodium borohydride ( NaBH 4 ) or hydroxylamine hydrochloride and any special capping or dispersing agent. Vitamin B 2 was used as reducing agent as well as capping agent due to its high-water solubility, biodegradability, and low-toxicity compared with other reducing agents. The average particle size of nanoprticle was found to be Ag (average size 6.1 ± 0.1 nm) and Pd (average size 4.1 ± 0.1 nm) nanoparticles in ethylene glycol and Ag (average size 5.9 ± 0.1 nm, and average size 6.1 ± 0.1) nanoparticles in acetic acid and NMP, respectively. The formation of noble multiple shape nanostructures and their self assembly were dependent on the solvent employed for the preparation. When water was used as solvent media, Ag and Pd nanoparticles started to self-assemble into rod-like structures and in isopropanol Ag and Pd nanoparticles yielded wire-like structures with a thickness in the range of 10 to 20 nm and several hundred microns in length. In acetone and acetonitrile medium, the Ag and Pd nanoparticles are self-assembled into a regular pattern making nanorod structures with thicknesses ranging from 100 to 200 nm and lengths of a few microns. The so-synthesized nanostructures were characterized using scanning electron microscopy (SEM), transmission electron microscopy (TEM), energy dispersive X-ray (EDX) analysis, and UV spectroscopy. The ensuing Ag and Pd nanoparticles catalyzed the reactions of aniline and pyrrole to generate polyaniline and polypyrrole nanofibers and may find various technological and biological applications. This single-step greener approach is general and can be extended to other noble metals and transition metal oxides.« less

  4. ITN Mixtures of Chlorfenapyr (Pyrrole) and Alphacypermethrin (Pyrethroid) for Control of Pyrethroid Resistant Anopheles arabiensis and Culex quinquefasciatus

    PubMed Central

    Oxborough, Richard M.; Kitau, Jovin; Matowo, Johnson; Feston, Emmanuel; Mndeme, Rajab; Mosha, Franklin W.; Rowland, Mark W.

    2013-01-01

    Pyrethroid resistant Anopheles gambiae malaria vectors are widespread throughout sub-Saharan Africa and continued efficacy of pyrethroid ITNs is under threat. Chlorfenapyr is a promising pyrrole insecticide with a unique mechanism of action conferring no cross-resistance to existing public health insecticides. Mixtures of chlorfenapyr (CFP) and alphacypermethrin (alpha) may provide additional benefits over chlorfenapyr or alphacypermethrin used alone. An ITN mixture of CFP 100 mg/m2+alpha 25 mg/m2 was compared with CFP 100 mg/m2 and alpha 25 mg/m2 in a small-scale experimental hut trial in an area of wild An. arabiensis. The same treatments were evaluated in tunnel tests against insectary-reared pyrethroid susceptible and resistant Culex quinquefasciatus. Performance was measured in terms of insecticide-induced mortality, and blood-feeding inhibition. Tunnel tests showed that mixtures of CFP 100+ alpha 25 were 1.2 and 1.5 times more effective at killing susceptible Cx. quinquefasciatus than either Alpha 25 (P = 0.001) or CFP 100 (P = 0.001) ITNs. Mixtures of CFP100+ alpha 25 were 2.2 and 1.2 times more effective against resistant Cx. quinquefasciatus than either alpha 25 (P = 0.001) or CFP100 (P = 0.003) ITNs. CFP 100+ alpha 25 produced higher levels of blood-feeding inhibition than CFP alone for susceptible (94 vs 46%, P = 0.001) and resistant (84 vs 53%, P = 0.001) strains. In experimental huts the mixture of CFP 100+ Alpha 25 killed 58% of An. arabiensis, compared with 50% for alpha and 49% for CFP, though the differences were not significant. Blood-feeding inhibition was highest in the mixture with a 76% reduction compared to the untreated net (P = 0.001). ITN mixtures of chlorfenapyr and alphacypermethrin should restore effective control of resistant populations of An. gambiae malaria vectors, provide protection from blood-feeding, and may have benefits for resistance management, particularly in areas with low or moderate frequency

  5. Preparation and evaluation of composites from montmorillonite and some heterocyclic polymers: 3. A water dispersible nanocomposite from pyrrole-montmorillonite polymerization system

    SciTech Connect

    SinhaRay, S.; Biswas, M.

    1999-06-01

    Montmorillonite (MMT)-based nanocomposites of polypyrrole (PPY) were prepared through the polymerization of pyrrole with MMT and FeCl{sub 3}-impregnated MM in bulk and in aqueous medium. The composites were characterized by IR, X-ray diffraction (XRD), and scanning electron microscopy (SEM) studies. XRD analyses revealed no change in d{sub 001} spacing in MMT (9.8 {angstrom}), suggesting no intercalation of PPY into MMT lamellae. TEM analysis indicated the particle size to be 25 {+-} 7 nm. The bulk conductivity of the composites was in the range of (1.3 to 26) x 10{sup {minus}5} S/cm, depending on the FeCl{sub 3}-impregnation level and on the PPY loading in the composites. Suitable procedures were developed for obtaining a stable aqueous dispersion and a reversible dispersion of these composites.

  6. Bicyclic octahydrocyclohepta[b]pyrrol-4(1H)one derivatives as novel selective anti-hepatitis C virus agents.

    PubMed

    Kaushik-Basu, Neerja; Ratmanova, Nina K; Manvar, Dinesh; Belov, Dmitry S; Cevik, Ozge; Basu, Amartya; Yerukhimovich, Mark M; Lukyanenko, Evgeny R; Andreev, Ivan A; Belov, Grigory M; Manfroni, Giuseppe; Cecchetti, Violetta; Frick, David N; Kurkin, Alexander V; Altieri, Andrea; Barreca, Maria Letizia

    2016-10-21

    We report the discovery of the bicyclic octahydrocyclohepta[b]pyrrol-4(1H)-one scaffold as a new chemotype with anti-HCV activity on genotype 1b and 2a subgenomic replicons. The most potent compound 34 displayed EC50 values of 1.8 μM and 4.5 μM in genotype 1b and 2a, respectively, coupled with the absence of any antimetabolic effect (gt 1b SI = 112.4; gt 2a SI = 44.2) in a cell-based assay. Compound 34 did not target HCV NS5B, IRES, NS3 helicase, or selected host factors, and thus future work will involve the unique mechanism of action of these new antiviral compounds. PMID:27376494

  7. Spectral, IR and magnetic studies of Mn(II), Co(II), Ni(II) and Cu(II) complexes with pyrrole-2-carboxyaldehyde thiosemicarbazone (L)

    NASA Astrophysics Data System (ADS)

    Chandra, Sulekh; Kumar, Anil

    2007-11-01

    Mn(II), Co(II), Ni(II) and Cu(II) complexes are synthesized with thiosemicarbazone (L) derived from pyrrole-2-carboxyaldehyde. These complexes are characterized by elemental analysis, molar conductance, magnetic susceptibility measurement, mass, IR, electronic and EPR spectral studies. The molar conductance measurement of the complexes in DMSO indicates that the complexes are non-electrolyte except Co(L) 2(NO 3) 2 and Ni(L) 2(NO 3) 2 complexes which are 1:2 electrolyte. All the complexes are of high-spin type. On the basis of spectral studies an octahedral geometry may be assigned for Mn(II), Co(II) and Ni(II) complexes except Co(L) 2(NO 3) 2 and Ni(L) 2(NO 3) 2 which are of tetrahedral geometry. A tetragonal geometry may be suggested for Cu(II) complexes.

  8. Low-cost synthesis and physical characterization of thieno[3,4-c]pyrrole-4,6-dione-based polymers.

    PubMed

    Berrouard, Philippe; Dufresne, Stéphane; Pron, Agnieszka; Veilleux, Justine; Leclerc, Mario

    2012-09-21

    The improved synthesis of thieno[3,4-c]pyrrole-4,6-dione (TPD) monomers, including Gewald thiophene ring formation, a Sandmeyer-type reaction, and neat condensation with an amine, is presented. This protocol enables faster, cheaper, and more efficient preparation of TPD units in comparison to traditional methods. Furthermore, a series of TPD homo- and pseudohomopolymers bearing various alkyl chains was synthesized via a direct heteroarylation polymerization (DHAP) procedure. UV-visible absorption and powder X-ray diffraction measurements revealed the relationship between the ratio of branched to linear alkyl chains and the optoelectronic properties of the polymers as well as their packing in the solid state. PMID:22946845

  9. Discovery of novel Tetrahydrobenzo[b]thiophene and pyrrole based scaffolds as potent and selective CB2 receptor ligands: The structural elements controlling binding affinity, selectivity and functionality.

    PubMed

    Osman, Noha A; Ligresti, Alessia; Klein, Christian D; Allarà, Marco; Rabbito, Alessandro; Di Marzo, Vincenzo; Abouzid, Khaled A; Abadi, Ashraf H

    2016-10-21

    CB2-based therapeutics show strong potential in the treatment of diverse diseases such as inflammation, multiple sclerosis, pain, immune-related disorders, osteoporosis and cancer, without eliciting the typical neurobehavioral side effects of CB1 ligands. For this reason, research activities are currently directed towards the development of CB2 selective ligands. Herein, the synthesis of novel heterocyclic-based CB2 selective compounds is reported. A set of 2,5-dialkyl-1-phenyl-1H-pyrrole-3-carboxamides, 5-subtituted-2-(acylamino)/(2-sulphonylamino)-thiophene-3-carboxylates and 2-(acylamino)/(2-sulphonylamino)-tetrahydrobenzo[b]thiophene-3-carboxylates were synthesized. Biological results revealed compounds with remarkably high CB2 binding affinity and CB2/CB1 subtype selectivity. Compound 19a and 19b from the pyrrole series exhibited the highest CB2 receptor affinity (Ki = 7.59 and 6.15 nM, respectively), as well as the highest CB2/CB1 subtype selectivity (∼70 and ∼200-fold, respectively). In addition, compound 6b from the tetrahydrobenzo[b]thiophene series presented the most potent and selective CB2 ligand in this series (Ki = 2.15 nM and CB2 subtype selectivity of almost 500-fold over CB1). Compound 6b showed a full agonism, while compounds 19a and 19b acted as inverse agonists when tested in an adenylate cyclase assay. The present findings thus pave the way to the design and optimization of heterocyclic-based scaffolds with lipophilic carboxamide and/or retroamide substituent that can be exploited as potential CB2 receptor activity modulators. PMID:27448919

  10. Anchoring the Gas-Phase Acidity Scale from Hydrogen Sulfide to Pyrrole. Experimental Bond Dissociation Energies of Nitromethane, Ethanethiol, and Cyclopentadiene.

    PubMed

    Ervin, Kent M; Nickel, Alex A; Lanorio, Jerry G; Ghale, Surja B

    2015-07-16

    A meta-analysis of experimental information from a variety of sources is combined with statistical thermodynamics calculations to refine the gas-phase acidity scale from hydrogen sulfide to pyrrole. The absolute acidities of hydrogen sulfide, methanethiol, and pyrrole are evaluated from literature R-H bond energies and radical electron affinities to anchor the scale. Relative acidities from proton-transfer equilibrium experiments are used in a local thermochemical network optimized by least-squares analysis to obtain absolute acidities of 14 additional acids in the region. Thermal enthalpy and entropy corrections are applied using molecular parameters from density functional theory, with explicit calculation of hindered rotor energy levels for torsional modes. The analysis reduces the uncertainties of the absolute acidities of the 14 acids to within ±1.2 to ±3.3 kJ/mol, expressed as estimates of the 95% confidence level. The experimental gas-phase acidities are compared with calculations, with generally good agreement. For nitromethane, ethanethiol, and cyclopentadiene, the refined acidities can be combined with electron affinities of the corresponding radicals from photoelectron spectroscopy to obtain improved values of the C-H or S-H bond dissociation energies, yielding D298(H-CH2NO2) = 423.5 ± 2.2 kJ mol(-1), D298(C2H5S-H) = 364.7 ± 2.2 kJ mol(-1), and D298(C5H5-H) = 347.4 ± 2.2 kJ mol(-1). These values represent the best-available experimental bond dissociation energies for these species. PMID:25549109