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Sample records for rapid radiometric method

  1. Radiometric method for the rapid detection of Leptospira organisms

    SciTech Connect

    Manca, N.; Verardi, R.; Colombrita, D.; Ravizzola, G.; Savoldi, E.; Turano, A.

    1986-02-01

    A rapid and sensitive radiometric method for detection of Leptospira interrogans serovar pomona and Leptospira interrogans serovar copenhageni is described. Stuart's medium and Middlebrook TB (12A) medium supplemented with bovine serum albumin, catalase, and casein hydrolysate and labeled with /sup 14/C-fatty acids were used. The radioactivity was measured in a BACTEC 460. With this system, Leptospira organisms were detected in human blood in 2 to 5 days, a notably shorter time period than that required for the majority of detection techniques.

  2. Susceptibility testing of filamentous fungi to amphotericin B by a rapid radiometric method

    SciTech Connect

    Merz, W.G.; Fay, D.; Thumar, B.; Dixon, D.

    1984-01-01

    A rapid, radiometric method was developed to determine the susceptibility of filamentous fungi to amphotericin B. The rapid, radiometric method depended on measurement of the inhibition of /sup 24/CO/sub 2/ production in the presence of amphotericin B. Thirty isolates of filamentous fungi were tested by the rapid, radiometric method and a reference agar dilution method. There was 93% agreement between the two methods when an 80% or greater decrease in CO/sub 2/ production was used to calculate the minimal inhibitory concentration with the rapid, radiometric method. Minimal inhibitory concentrations, based on 80% decrease of CO/sub 2/ production, were achieved within 24 h of incubation with all of the fungi tested.

  3. Rapid radiometric methods to detect and differentiate Mycobacterium tuberculosis/M. bovis from other mycobacterial species

    SciTech Connect

    Siddiqi, S.H.; Hwangbo, C.C.; Silcox, V.; Good, R.C.; Snider, D.E. Jr.; Middlebrook, G.

    1984-10-01

    Rapid methods for the differentiation of Mycobacterium tuberculosis/M. bovis (TB complex) from other mycobacteria (MOTT bacilli) were developed and evaluated in a three-phase study. In the first phase, techniques for identification of Mycobacterium species were developed by using radiometric technology and BACTEC Middlebrook 7H12 liquid medium. Based on /sup 14/CO/sub 2/ evolution, characteristic growth patterns were established for 13 commonly encountered mycobacterial species. Mycobacteria belonging to the TB complex were differentiated from other mycobacteria by cellular morphology and rate of /sup 14/CO/sub 2/ evolution. For further differentiation, radiometric tests for niacin production and inhibition by Q-nitro-alpha-acetyl amino-beta-hydroxy-propiophenone (NAP) were developed. In the second phase, 100 coded specimens on Lowenstein-Jensen medium were identified as members of the TB complex, MOTT bacilli, bacteria other than mycobacteria, or ''no viable organisms'' within 3 to 12 (average 6.4) days of receipt from the Centers for Disease Control. Isolation and identification of mycobacteria from 20 simulated sputum specimens were carried out in phase III. Out of 20 sputum specimens, 16 contained culturable mycobacteria, and all of the positives were detected by the BACTEC method in an average of 7.3 days. The positive mycobacterial cultures were isolated and identified as TB complex or MOTT bacilli in an average of 12.8 days. The radiometric NAP test was found to be highly sensitive and specific for a rapid identification of TB complex, whereas the radiometric niacin test was found to have some inherent problems. Radiometric BACTEC and conventional methodologies were in complete agreement in Phase II as well as in Phase III.

  4. Absolute radiometric calibration of the RapidEye multispectral imager using the reflectance-based vicarious calibration method

    NASA Astrophysics Data System (ADS)

    Naughton, Denis; Brunn, Andreas; Czapla-Myers, Jeff; Douglass, Scott; Thiele, Michael; Weichelt, Horst; Oxfort, Michael

    2011-01-01

    RapidEye AG is a commercial provider of geospatial information products and customized solutions derived from Earth observation image data. The source of the data is the RapidEye constellation consisting of five low-earth-orbit imaging satellites. We describe the rationale, methods, and results of a reflectance-based vicarious calibration campaign that was conducted between April 2009 and May 2010 at Railroad Valley Playa and Ivanpah Playa to determine the on-orbit radiometric accuracy of the RapidEye sensor. In situ surface spectral reflectance measurements of known ground targets and an assessment of the atmospheric conditions above the sites were taken during spacecraft overpasses. The ground data are used as input to a radiative transfer code to compute a band-specific top-of-atmosphere spectral radiance. A comparison of these predicted values based on absolute physical data to the measured at-sensor spectral radiance provide the absolute calibration of the sensor. Initial assessments show that the RapidEye sensor response is within 8% of the predicted values. Outcomes from this campaign are then used to update the calibration parameters in the ground segment processing system. Subsequent verification events confirmed that the measured RapidEye response improved to within 4% of the predictions based on the vicarious calibration method.

  5. Survey of emissivity measurement by radiometric methods.

    PubMed

    Honner, M; Honnerová, P

    2015-02-01

    A survey of the state of the art in the field of spectral directional emissivity measurements by using radiometric methods is presented. Individual quantity types such as spectral, band, or total emissivity are defined. Principles of emissivity measurement by various methods (direct and indirect, and calorimetric and radiometric) are discussed. The paper is focused on direct radiometric methods. An overview of experimental setups is provided, including the design of individual parts such as the applied reference sources of radiation, systems of sample clamping and heating, detection systems, methods for the determination of surface temperature, and procedures for emissivity evaluation. PMID:25967774

  6. RapidEye constellation relative radiometric accuracy measurement using lunar images

    NASA Astrophysics Data System (ADS)

    Steyn, Joe; Tyc, George; Beckett, Keith; Hashida, Yoshi

    2009-09-01

    The RapidEye constellation includes five identical satellites in Low Earth Orbit (LEO). Each satellite has a 5-band (blue, green, red, red-edge and near infrared (NIR)) multispectral imager at 6.5m GSD. A three-axes attitude control system allows pointing the imager of each satellite at the Moon during lunations. It is therefore possible to image the Moon from near identical viewing geometry within a span of 80 minutes with each one of the imagers. Comparing the radiometrically corrected images obtained from each band and each satellite allows a near instantaneous relative radiometric accuracy measurement and determination of relative gain changes between the five imagers. A more traditional terrestrial vicarious radiometric calibration program has also been completed by MDA on RapidEye. The two components of this program provide for spatial radiometric calibration ensuring that detector-to-detector response remains flat, while a temporal radiometric calibration approach has accumulated images of specific dry dessert calibration sites. These images are used to measure the constellation relative radiometric response and make on-ground gain and offset adjustments in order to maintain the relative accuracy of the constellation within +/-2.5%. A quantitative comparison between the gain changes measured by the lunar method and the terrestrial temporal radiometric calibration method is performed and will be presented.

  7. Detection of coliform organisms in drinking water by radiometric method.

    PubMed

    Khurshid, S J; Bibi, S

    1991-07-01

    The radiometric method has been used for detection of coliform bacteria in water. The method is based on measuring the released metabolic 14CO2 from 14C-lactose in growth media containing coliform organisms incubated at 37 degrees C under continuous shaking. This rapid and sensitive radiometric method permits the detection of even single coliform organisms within 6 hours of incubation. Using this automated method, a total of 102 samples (in duplicate) collected from different areas in and around Rawalpindi and Islamabad were assessed for coliform bacteria. Of these 102 samples, 50 were tap water samples, 40 from wells and 6 each were from Rawal and Simly dams. About 47% and 67% tap water samples, while 62% and 74% well water samples were found unsatisfactory from around Islamabad and Rawalpindi areas, respectively. About 83% and 66% water samples from Rawal dam and Simly dam respectively were found to be unsatisfactory. PMID:1920760

  8. Research radiometric calibration quantitative transfer methods between internal and external

    NASA Astrophysics Data System (ADS)

    Guo, Ju Guang; Ma, Yong hui; Zhang, Guang; Yang, Zhi hui

    2015-10-01

    This paper puts forward a method by realizing the internal and external radiation calibration transfer for infrared radiation characteristics quantitative measuring system. Through technological innovation and innovation application to establish a theoretical model of the corresponding radiated transfer method. This method can be well in engineering application for technology conversion process of radiometric calibration that with relatively simple and effective calibration in the half light path radiation instead of complex difficult whole optical path radiometric calibration. At the same time, it also will provide the basis of effective support to further carry out the target radiated characteristics quantitative measurement and application for ground type infrared radiated quantitative measuring system.

  9. Determination of in vitro susceptibility of Mycobacterium tuberculosis to cephalosporins by radiometric and conventional methods

    SciTech Connect

    Heifets, L.B.; Iseman, M.D.; Cook, J.L.; Lindholm-Levy, P.J.; Drupa, I.

    1985-01-01

    Among eight cephalosporins and cephamycins tested in preliminary in vitro screening against Mycobacterium tuberculosis, the most promising for further study was found to be ceforanide, followed by ceftizoxime, cephapirin, and cefotaxime. Moxalactam, cefoxitin, cefamandole, and cephalothin were found to be not active enough against M. tuberculosis to be considered for further in vitro studies. The antibacterial activity of various ceforanide concentrations was investigated by three methods: (i) the dynamics of radiometric readings (growth index) in 7H12 broth; (ii) the number of CFU in the same medium; and (iii) the proportion method on 7H11 agar plates. There was a good correlation among the results obtained with these methods. The MIC for most strains ranged from 6.0 to 25.0 micrograms/ml. The BACTEC radiometric method is a reliable, rapid, and convenient method for preliminary screening and determination of the level of antibacterial activity of drugs not commonly used against M. tuberculosis.

  10. MODIS Radiometric Calibration Program, Methods and Results

    NASA Technical Reports Server (NTRS)

    Xiong, Xiaoxiong; Guenther, Bruce; Angal, Amit; Barnes, William; Salomonson, Vincent; Sun, Junqiang; Wenny, Brian

    2012-01-01

    As a key instrument for NASA s Earth Observing System (EOS), the Moderate Resolution Imaging Spectroradiometer (MODIS) has made significant contributions to the remote sensing community with its unprecedented amount of data products continuously generated from its observations and freely distributed to users worldwide. MODIS observations, covering spectral regions from visible (VIS) to long-wave infrared (LWIR), have enabled a broad range of research activities and applications for studies of the earth s interactive system of land, oceans, and atmosphere. In addition to extensive pre-launch measurements, developed to characterize sensor performance, MODIS carries a set of on-board calibrators (OBC) that can be used to track on-orbit changes of various sensor characteristics. Most importantly, dedicated and continuous calibration efforts have been made to maintain sensor data quality. This paper provides an overview of the MODIS calibration program, on-orbit calibration activities, methods, and performance. Key calibration results and lessons learned from the MODIS calibration effort are also presented in this paper.

  11. Site characterization for calibration of radiometric sensors using vicarious method

    NASA Astrophysics Data System (ADS)

    Parihar, Shailesh; Rathore, L. S.; Mohapatra, M.; Sharma, A. K.; Mitra, A. K.; Bhatla, R.; Singh, R. S.; Desai, Yogdeep; Srivastava, Shailendra S.

    2016-05-01

    Radiometric performances of earth observation satellite/sensors vary from ground pre-launch calibration campaign to post launch period extended to lifetime of the satellite due to launching vibrations. Therefore calibration is carried out worldwide through various methods throughout satellite lifetime. In India Indian Space Research Organization (ISRO) calibrates the sensor of Resourcesat-2 satellite by vicarious method. One of these vicarious calibration methods is the reflectance-based approach that is applied in this study for radiometric calibration of sensors on-board Resouresat-2 satellite. The results of ground-based measurement of atmospheric conditions and surface reflectance are made at Bap, Rajasthan Calibration/Validation (Cal/Val) site. Cal/Val observations at site were carried out with hyper-spectral Spectroradiometer covering spectral range of 350nm- 2500nm for radiometric characterization of the site. The Sunphotometer/Ozonometer for measuring the atmospheric parameters has also been used. The calibrated radiance is converted to absolute at-sensor spectral reflectance and Top-Of-Atmosphere (TOA) radiance. TOA radiance was computed using radiative transfer model `Second simulation of the satellite signal in the solar spectrum' (6S), which can accurately simulate the problems introduced by the presence of the atmosphere along the path from Sun to target (surface) to Sensor. The methodology for band averaged reflectance retrieval and spectral reflectance fitting process are described. Then the spectral reflectance and atmospheric parameters are put into 6S code to predict TOA radiance which compare with Resourcesat-2 radiance. Spectral signature and its reflectance ratio indicate the uniformity of the site. Thus the study proves that the selected site is suitable for vicarious calibration of sensor of Resourcesat-2. Further the study demonstrates the procedure for similar exercise for site selection for Cal/Val analysis of other satellite over India

  12. Improved Radiometric Based Method for Suppressing Impulse Noise from Corrupted Images

    NASA Astrophysics Data System (ADS)

    Wu, Changcheng; Zhao, Chunyu; Chen, Dayue

    A novel filter is introduced in this paper to improve the ability of radiometric based method on suppressing impulse noise. Firstly, a new method is introduced to design the impulsive weight by measuring how impulsive a pixel is. Then, the impulsive weight is combined with the radiometric weight to obtain the evaluated values on each pixel in the whole corrupted image. The impulsive weight is mainly designed to suppress the impulse noise, while the radiometric weight is mainly designed to protect the noise-free pixel. Extensive experiments demonstrate that the proposed algorithm can perform much better than other filters in terms of the quantitative and qualitative aspects.

  13. Calibration method for radiometric and wavelength calibration of a spectrometer

    NASA Astrophysics Data System (ADS)

    Granger, Edward M.

    1998-12-01

    A new calibration target or Certified Reference Material (CRM) has been designed that uses violet, orange, green and cyan dyes ont cotton paper. This paper type was chosen because it has a relatively flat spectral response from 400 nm to 700 nm and good keeping properties. These specific dyes were chosen because the difference signal between the orange, cyan, green and purple dyes have certain characteristics that then a low the calibration of an instrument. The ratio between the difference readings is a direct function of the center wavelength of a given spectral band. Therefore, the radiometric and spectral calibration can be determined simultaneously from the physical properties of the reference materials.

  14. A review of some radiometric calibration problems and methods

    NASA Technical Reports Server (NTRS)

    Slater, P. N.

    1984-01-01

    The in-flight radiometric calibration instrumentation and procedures of the Landsat Thematic Mapper and the high-resolution visible-range instruments of SPOT are illustrated with drawings and diagrams, characterized, and compared. Problems encountered in the laboratory calibration process, minimizing the temporal instability of the systems, identifying anomalies in the electronics in flight, and rechecking the calibration are examined, and it is pointed out that the stability of the calibration systems is less than that of the instruments themselves. The use of carefully measured ground-site data and atmospheric parameters in combination with radiative-transfer models for periodic calibration is recommended.

  15. Experimental methods of indoor millimeter-wave radiometric imaging for personnel concealed contraband detection

    NASA Astrophysics Data System (ADS)

    Hu, Taiyang; Xiao, Zelong; Li, Hao; Lv, Rongchuan; Lu, Xuan

    2014-11-01

    The increasingly emerging terrorism attacks and violence crimes around the world have posed severe threats to public security, so carrying out relevant research on advanced experimental methods of personnel concealed contraband detection is crucial and meaningful. All of the advantages of imaging covertly, avoidance of interference with other systems, intrinsic property of being safe to persons under screening , and the superior ability of imaging through natural or manmade obscurants, have significantly combined to enable millimeter-wave (MMW) radiometric imaging to offer great potential in personnel concealed contraband detection. Based upon the current research status of MMW radiometric imaging and urgent demands of personnel security screening, this paper mainly focuses on the experimental methods of indoor MMW radiometric imaging. The reverse radiation noise resulting from super-heterodyne receivers seriously affects the image experiments carried out at short range, so both the generation mechanism and reducing methods of this noise are investigated. Then, the benefit of sky illumination no longer exists for the indoor radiometric imaging, and this leads to the decrease in radiometric temperature contrast between target and background. In order to enhance the radiometric temperature contrast for improving indoor imaging performance, the noise illumination technique is adopted in the indoor imaging scenario. In addition, the speed and accuracy of concealed contraband detection from acquired MMW radiometric images are usually restricted to the deficiencies in traditional artificial interpretation by security inspectors, thus an automatic recognition and location algorithm by integrating improved Fuzzy C-means clustering with moment invariants is put forward. A series of original results are also presented to demonstrate the significance and validity of these methods.

  16. Comparison of diverse methods for the correction of atmospheric effects on LANDSAT and SKYLAB images. [radiometric correction in Brazil

    NASA Technical Reports Server (NTRS)

    Parada, N. D. J. (Principal Investigator); Camara, G.; Dias, L. A. V.; Mascarenhas, N. D. D.; Desouza, R. C. M.; Pereira, A. E. C.

    1982-01-01

    Earth's atmosphere reduces a sensors ability in currently discriminating targets. Using radiometric correction to reduce the atmospheric effects may improve considerably the performance of an automatic image interpreter. Several methods for radiometric correction from the open literature are compared leading to the development of an atmospheric correction system.

  17. Multi-point radiometric calibration method based on complex spectrum of Fourier transform spectrometer

    NASA Astrophysics Data System (ADS)

    He, Qian; Wang, Guangping; Wu, Jingli; Li, Junwei

    2014-11-01

    As the impact of the instrument internal error, external interference and other factors, the interferogram measured by Fourier transform spectrometer is asymmetric, result in the complex outcome after Fourier transform. Currently, most radiometric calibration method used for Fourier transform spectrometer is usually based on real spectrums, which is converted from the above complex spectrum by calculating magnitude value or make the phase correction first. Proceed from error sources and mechanisms of the Fourier transform spectrometer, we propose a multi-point radiometric calibration method based on complex spectral data to improve the processing efficiency and accuracy, which is obtained by the original interferogram via Fourier transform. We solving the instrument response function include linear gain and offset by complex spectrum above to calculate complex spectral radiance. Compared with the traditional method based on real spectrum, the present efficient method does not limited to real spectrum and the phase correction is not required. In this paper, we use BOMEM's MR304 Fourier transform infrared spectrometer and the DCN1000N3 blackbody made by HGH Infrared Systems to carry out the radiation calibration experiment in laboratory. The results show that, the amplitude of complex radiance spectrum obtained by this method has a high consistency with the theoretical value, while the extra imaginary spectrum is similar with the difference between results and theoretical value in absolute value and trends. It proved that, this multi-point radiometric calibration method by using the amplitude of complex spectral data is highly reliable; meanwhile, the imaginary spectrum can reflect the calibration error very well and offer a new technical approach for accuracy evaluation research.

  18. Radiometric calibration method for large aperture infrared system with broad dynamic range.

    PubMed

    Sun, Zhiyuan; Chang, Songtao; Zhu, Wei

    2015-05-20

    Infrared radiometric measurements can acquire important data for missile defense systems. When observation is carried out by ground-based infrared systems, a missile is characterized by long distance, small size, and large variation of radiance. Therefore, the infrared systems should be manufactured with a larger aperture to enhance detection ability and calibrated at a broader dynamic range to extend measurable radiance. Nevertheless, the frequently used calibration methods demand an extended-area blackbody with broad dynamic range or a huge collimator for filling the system's field stop, which would greatly increase manufacturing costs and difficulties. To overcome this restriction, a calibration method based on amendment of inner and outer calibration is proposed. First, the principles and procedures of this method are introduced. Then, a shifting strategy of infrared systems for measuring targets with large fluctuations of infrared radiance is put forward. Finally, several experiments are performed on a shortwave infrared system with Φ400  mm aperture. The results indicate that the proposed method cannot only ensure accuracy of calibration but have the advantage of low cost, low power, and high motility. Hence, it is an effective radiometric calibration method in the outfield. PMID:26192499

  19. Thermal Return Reflection Method for Resolving Emissivity and Temperature in Radiometric Measurements

    SciTech Connect

    Woskov, Paul P.; Sundaram, S. K.

    2002-11-15

    A radiometric method for resolving the emissivity, e, and temperature, T, in thermal emission measurements is presented. Thermal radiation from a viewed source is split by a beamsplitter between a radiometer and a mirror aligned to return a part of the thermal radiation back to the source. The ratio of the thermal signal with and without a return reflection provides a measurement of the emissivity without need of any other probing sources. The analytical expressions that establish this relationship are derived taking into account waveguide/optic losses and sources between the radiometer and viewed sample. The method is then applied to thermal measurements of several refractory materials at temperatures up to 1150 ?C. A 137 GHz radiometer is used to measure the emissivity and temperature of an alumina brick, an Inconel 690 plate, and two grades of silicon carbide. Reasonable temperature agreement is achieved with an independent thermocouple measurement. However, when the emissivity approaches zero, as in the case of the Inconel plate, radiometric temperature determinations are inaccurate, though an emissivity near zero is correctly measured. This method is expected to be of considerable value to non-contact thermal analysis applications of materials.

  20. The multi-temporal comparisons from high resolution KOMPSAT-2 image with dehaze and radiometric normalization methods

    NASA Astrophysics Data System (ADS)

    Yeom, J.; Kim, H.; Kim, Y.; Kim, J.

    2011-12-01

    The KOrea MultiPurpose SAtellite-2 (KOMPSAT-2) satellite developed by Korea Aerospace Research Institute (KARI) was launched on July 28, 2006 in northern Russia and has continued successful operations for almost 4 years past the initial mission. KOMPSAT-2 has been providing 1-m resolution of panchromatic images and 4-m resolution multi spectral images all over the world. In the case optical satellites, haze is considered as an unwanted obstacle when estimating surface information. Usually, it is masked with subjective threshold method to reduce contaminated area which may give wrong information to user. In this study, haze transformation is applied for determining haze area and inferring surface digital number of KOMPSAT-2 under haze condition. When comparing differently observed images, radiometric normalized is the essential process to interpret variations of surface phenomena, especially in land surface change detection. There are mainly two kinds of methods to correct the different radiometric values. One is the absolute radiometric normalization intending for trying to estimate the actual surface reflectance, and another is relative radiometric normalization, which is linearly rectifying the observed image at the specific time to the others at different time for common radiometric scale. In this study, relative radiometric normalization method is used for correcting differences among images caused by inconsistent observation condition. When normalizing multi-date images, BRDF (Bidirectional Reflectance Distribution Function) also considered for reducing anisotropy effects caused by relative solar-sensor-target geometry. Processed surface reflectance based on dehazing and radiometric normalization show better results when comparing multi-date images than original reflectance images.

  1. Radiometric macrophage culture assay for rapid evaluation of antileprosy activity of rifampin

    SciTech Connect

    Mittal, A.; Seshadri, P.S.; Prasad, H.K.; Sathish, M.; Nath, I.

    1983-10-01

    The antileprosy effect of rifampin was evaluated by a newly developed rapid in vitro assay wherein 31 human-derived strains and 1 armadillo-derived strain of Mycobacterium leprae were maintained for 2 and 3 weeks, respectively, in murine and human macrophages in the presence of (3H)thymidine. Of these strains, 27 showed significant incorporation of the radiolabel in cultures of live bacilli as compared with control cultures of heat-killed bacilli of the same strain. Consistent and significant inhibition of (3H)thymidine uptake was observed in M. leprae resident cultures with 3 to 200 ng of rifampin per ml as compared with similar cultures without the drug. In general, an increase in percent inhibition was seen from 3 to 20 ng/ml, with marginal increases at 40, 50, and 100 ng/ml. M. leprae strains appear to be remarkably susceptible to this drug in the in vitro assay.

  2. NASA IKONOS Radiometric Characterization

    NASA Technical Reports Server (NTRS)

    Pagnutti, Mary; Frisbee, Troy; Zanoni, Vicki; Blonski, Slawek; Daehler, Erik; Grant, Brennan; Holekamp, Kara; Ryan, Robert; Sellers, Richard; Smith, Charles

    2002-01-01

    The objective of this program: Perform radiometric vicarious calibrations of IKQNOS imagery and compare with Space Imaging calibration coefficients The approach taken: utilize multiple well-characterized sites which are widely used by the NASA science community for radiometric characterization of airborne and spaceborne sensors; and to Perform independent characterizations with independent teams. Each team has slightly different measurement techniques and data processing methods.

  3. Photovoltaics radiometric issues and needs

    SciTech Connect

    Myers, D.R.

    1995-11-01

    This paper presents a summary of issues discussed at the photovoltaic radiometric measurements workshop. Topics included radiometric measurements guides, the need for well-defined goals, documentation, calibration checks, accreditation of testing laboratories and methods, the need for less expensive radiometric instrumentation, data correlations, and quality assurance.

  4. PLEIADES-HR 1A&1B image quality commissioning: innovative radiometric calibration methods and results

    NASA Astrophysics Data System (ADS)

    Martin, Vincent; Blanchet, Gwendoline; Kubik, Philippe; Lacherade, Sophie; Latry, Christophe; Lebegue, Laurent; Lenoir, Florie; Porez-Nadal, Florence

    2013-09-01

    PLEIADES is an earth observing system conducted by the French National Space Agency, CNES. It consists of two satellites launched on December 2011 (PHR-1A) and December 2012 (PHR-1B), both designed to provide optical pushbroom imagery on five spectral bands to civilian and defense users, with ground sample distance up to 70 cm. During inflight image quality commissioning, radiometric activities included inter-detector normalization coefficients computation, refocusing operations, MTF assessment and estimation of signal to noise ratios. This paper presents inflight results for both satellites. It focuses on several innovative methods that were implemented, taking advantage of the satellite platform great agility. These methods are based on processing images obtained through dedicated exotic guidance. In particular, slow-motion steering enables an efficient estimation of the instrumental noise model, since during acquisition each detector has been viewing a stable ground target along different time samples. Conversely, rotated retina guidance is used to guarantee that all different elementary detectors have successively viewed the same set of landscape samples during acquisition. Non-uniformity of detector sensitivities can then be characterized, and on-board coefficients used prior to compression can be calibrated in order to prevent vertical striping effects on operational images. Defocus control and Point Spread Function estimation can be easily obtained through processing acquisitions of stars associated to various spectral characteristics, for different adjustments of the refocusing system. All these methods allow an accurate estimation of radiometric performance on the whole range of specified spectral radiances, while drastically reducing the number of required acquisitions on natural targets.

  5. The Relationship between Balancing Reactions and Reaction Lifetimes: A Consideration of the Potassium-Argon Radiometric Method for Dating Minerals

    ERIC Educational Resources Information Center

    Howard, William A.

    2005-01-01

    A detailed examination of a commonly accepted practice in geology offers an example of how to stimulate critical thinking, teaches students how to read reactions, and challenges students to formulate better experiments for determining mineral ages more accurately. A demonstration of a Potassium-Argon radiometric method for dating minerals is…

  6. Study on method of radiometric calibration for precision measurement of micro size damage site

    NASA Astrophysics Data System (ADS)

    Yuan, Hao-yu; Peng, Zhi-tao; Wang, Wen-fang; Chen, Feng-dong; Tang, Jun; Feng, Bo; Liu, Guo-dong; Liu, Bing-guo

    2014-09-01

    Large aperture optical have high risk of damage when woke on high flux laser. For avoid lethal damages breakdown the expensive large aperture optical, replace the optical that damaged before damage site increase to can't repaired, we need precision measurement of optical surface damage sites size. The size of the optics which be detected is 400μm ×400μm, and the size of CCD array pixel is 4K×4K which we selected, so pixel resolution only 100μm of the Optical Damage Online Inspection system, it hard to measurement damage sites which size less than 100μm. This paper describes a method of radiometric calibration to measure online optical damage site that greater than 50μm by Optical Damage Online Inspection system. Numerical statement gray on CCD of different size damage sites by select a fixed variable of illumination intensity, shutter and numerical aperture of image-forming system. Fitting a curve with suitable function of gray and actual size, precision measure optical damage sites that greater than 50μm by the curve. Test results indicate that, the deviation less than 20% which measure size and actual size .This method settle problems of micro size damage site hard to measure online under the condition of long working distance and low optical resolution. At present, this method have used on Optical Damage Online Inspection system of high flux laser installation, it important significance for observation damage site size grown and accurately appraise the optical damage.

  7. Rapid actinide-separation methods

    SciTech Connect

    Maxwell, S.L. III

    1997-12-31

    New high-speed actinide-separation methods have been developed by the Savannah River Site Central Laboratory that can be applied to nuclear materials process samples, waste solutions and environmental samples. As part of a reengineering effort to improve efficiencies and reduce operating costs, solvent extraction methods (TTA, Hexone, TBP and TIOA) used for over thirty years in the SRS Central Laboratory were replaced with new rapid extraction column methods able to handle a variety of difficult sample matrices and actinide levels. Significant costs savings were realized and costly mixed-waste controls were avoided by using applied vacuum and 50-100 micron particle-size resins from Eichrom Industries. TEVA Resin{reg_sign}, UTEVA Resin{reg_sign}, and TRU Resin{reg_sign} columns are used with flow rates of approximately two to three milliliters per minute to minimize sample turnaround times. Single-column, dual-column and sequential-cartridge methods for plutonium, uranium, neptunium, americium and curium were developed that enable rapid, cost-effective separations prior to alpha-particle counting, thermal ionization and inductively coupled plasma mass spectrometry, and laser phosphorescence measurements.

  8. A simple and effective radiometric correction method to improve landscape change detection across sensors and across time

    USGS Publications Warehouse

    Chen, X.; Vierling, Lee; Deering, D.

    2005-01-01

    Satellite data offer unrivaled utility in monitoring and quantifying large scale land cover change over time. Radiometric consistency among collocated multi-temporal imagery is difficult to maintain, however, due to variations in sensor characteristics, atmospheric conditions, solar angle, and sensor view angle that can obscure surface change detection. To detect accurate landscape change using multi-temporal images, we developed a variation of the pseudoinvariant feature (PIF) normalization scheme: the temporally invariant cluster (TIC) method. Image data were acquired on June 9, 1990 (Landsat 4), June 20, 2000 (Landsat 7), and August 26, 2001 (Landsat 7) to analyze boreal forests near the Siberian city of Krasnoyarsk using the normalized difference vegetation index (NDVI), enhanced vegetation index (EVI), and reduced simple ratio (RSR). The temporally invariant cluster (TIC) centers were identified via a point density map of collocated pixel VIs from the base image and the target image, and a normalization regression line was created to intersect all TIC centers. Target image VI values were then recalculated using the regression function so that these two images could be compared using the resulting common radiometric scale. We found that EVI was very indicative of vegetation structure because of its sensitivity to shadowing effects and could thus be used to separate conifer forests from deciduous forests and grass/crop lands. Conversely, because NDVI reduced the radiometric influence of shadow, it did not allow for distinctions among these vegetation types. After normalization, correlations of NDVI and EVI with forest leaf area index (LAI) field measurements combined for 2000 and 2001 were significantly improved; the r 2 values in these regressions rose from 0.49 to 0.69 and from 0.46 to 0.61, respectively. An EVI "cancellation effect" where EVI was positively related to understory greenness but negatively related to forest canopy coverage was evident across a

  9. Validation of the onboard radiometric calibration of the GOES I-M visible channel by reflectance-based vicarious methods

    NASA Astrophysics Data System (ADS)

    Leisso, Nathan P.; Thome, Kurtis J.; Czapla-Myers, Jeffrey S.

    2007-09-01

    The current generation of the Geostationary Operations Environmental Satellite (GOES) platform employs a total of 5 sensors to monitor and record atmospheric conditions used in predictions of upcoming weather events. Included in this package is a 5-band imager that, from the 36,000-km geosynchronous orbit inhabited by GOES platform, enables multiple fixed full-disc surface images of the earth during the course of a 24-hour day. There is currently no on-board radiometric calibration for the visible bands of the imager and radiometric calibration relies on vicarious approaches. The Remote Sensing Group (RSG) at the University of Arizona uses a vicarious approach that relies on ground-based measurements to determine the radiometric calibration for multiple sun-synchronous and airborne visible and near-infrared sensors. The current work extends the approach to the GOES I-M series of sensor. The paper presents the methods and results of the reflectance-based method applied to the 1-km visible channel of GOES-11using large North American high-desert test sites. Modifications to the RSG's methods to take into account the location of the test sites at large zenith angles within the full-disk GOES image. The work provides an opportunity to evaluate uncertainties of the spectral BRF of the test sites at large view angles and resulting importance to the accurate radiometric calibration of a sensor. In addition, the impact of increased path length caused by the large view angle is evaluated with an emphasis on the increased effect of the atmospheric characterization.

  10. Correction to Method of Establishing the Absolute Radiometric Accuracy of Remote Sensing Systems While On-orbit Using Characterized Stellar Sources

    NASA Technical Reports Server (NTRS)

    Bowen, Howard S.; Cunningham, Douglas M.

    2007-01-01

    The contents include: 1) Brief history of related events; 2) Overview of original method used to establish absolute radiometric accuracy of remote sensing instruments using stellar sources; and 3) Considerations to improve the stellar calibration approach.

  11. Radiometric Dating Does Work!

    ERIC Educational Resources Information Center

    Dalrymple, G. Brent

    2000-01-01

    Discusses the accuracy of dating methods and creationist arguments that radiometric dating does not work. Explains the Manson meteorite impact and the Pierre shale, the ages of meteorites, the K-T tektites, and dating the Mount Vesuvius eruption. (Author/YDS)

  12. Critical comparison of radiometric and mass spectrometric methods for the determination of radionuclides in environmental, biological and nuclear waste samples.

    PubMed

    Hou, Xiaolin; Roos, Per

    2008-02-11

    The radiometric methods, alpha (alpha)-, beta (beta)-, gamma (gamma)-spectrometry, and mass spectrometric methods, inductively coupled plasma mass spectrometry, accelerator mass spectrometry, thermal ionization mass spectrometry, resonance ionization mass spectrometry, secondary ion mass spectrometry, and glow discharge mass spectrometry are reviewed for the determination of radionuclides. These methods are critically compared for the determination of long-lived radionuclides important for radiation protection, decommissioning of nuclear facilities, repository of nuclear waste, tracer application in the environmental and biological researches, these radionuclides include (3)H, (14)C, (36)Cl, (41)Ca, (59,63)Ni, (89,90)Sr, (99)Tc, (129)I, (135,137)Cs, (210)Pb, (226,228)Ra, (237)Np, (241)Am, and isotopes of thorium, uranium and plutonium. The application of on-line methods (flow injection/sequential injection) for separation of radionuclides and automated determination of radionuclides is also discussed. PMID:18215644

  13. A Method to Estimate Uncertainty in Radiometric Measurement Using the Guide to the Expression of Uncertainty in Measurement (GUM) Method; NREL (National Renewable Energy Laboratory)

    SciTech Connect

    Habte, A.; Sengupta, M.; Reda, I.

    2015-03-01

    Radiometric data with known and traceable uncertainty is essential for climate change studies to better understand cloud radiation interactions and the earth radiation budget. Further, adopting a known and traceable method of estimating uncertainty with respect to SI ensures that the uncertainty quoted for radiometric measurements can be compared based on documented methods of derivation.Therefore, statements about the overall measurement uncertainty can only be made on an individual basis, taking all relevant factors into account. This poster provides guidelines and recommended procedures for estimating the uncertainty in calibrations and measurements from radiometers. The approach follows the Guide to the Expression of Uncertainty in Measurement (GUM). derivation.Therefore, statements about the overall measurement uncertainty can only be made on an individual basis, taking all relevant factors into account. This poster provides guidelines and recommended procedures for estimating the uncertainty in calibrations and measurements from radiometers. The approach follows the Guide to the Expression of Uncertainty in Measurement (GUM).

  14. Comparison of diffuse sky irradiance calculation methods and effect on surface reflectance retrieval from an automated radiometric calibration test site

    NASA Astrophysics Data System (ADS)

    Leisso, Nathan; Czapla-Myers, Jeffrey

    2011-10-01

    The Remote Sensing Group (RSG) at the University of Arizona is currently refining an automated system for the absolute radiometric calibration of earth-observing sensors. The Radiometric Calibration Test Site (RadCaTS) relies on semi-permanent instrumentation at the Railroad Valley (RRV) test site to collect data from which surface reflectance and an atmospheric characterization is determined. Multispectral surface reflectance is determined from calibrated ground viewing radiometers and assimilated to determine the hyperspectral reflectance used in radiative transfer calculations. The reflectance retrieval algorithm relies on an accurate determination of the diffuse sky irradiance for the time of interest. Currently, diffuse sky irradiance is modeled using the atmospheric characterization as input into MODTRAN5. This work investigates the accuracy of the diffuse sky modeling by comparing modeled results to measurements made at the test site. Diffuse sky irradiance from several alternative methods are also presented. Surface reflectance is computed and compared to in-situ measurements taken with a portable spectoradiometer.

  15. Rapid method to determine actinides and 89/90Sr in limestone and marble samples

    DOE PAGESBeta

    Maxwell, Sherrod L.; Culligan, Brian; Hutchison, Jay B.; Utsey, Robin C.; Sudowe, Ralf; McAlister, Daniel R.

    2016-04-12

    A new method for the determination of actinides and radiostrontium in limestone and marble samples has been developed that utilizes a rapid sodium hydroxide fusion to digest the sample. Following rapid pre-concentration steps to remove sample matrix interferences, the actinides and 89/90Sr are separated using extraction chromatographic resins and measured radiometrically. The advantages of sodium hydroxide fusion versus other fusion techniques will be discussed. Lastly, this approach has a sample preparation time for limestone and marble samples of <4 hours.

  16. Rapid presumptive identification of the Mycobacterium tuberculosis-bovis complex by radiometric determination of heat stable urease

    SciTech Connect

    Gandy, J.H.; Pruden, E.L.; Cox, F.R.

    1983-12-01

    Simple and rapid Bactec methodologies for the determination of neat (unaltered) and heat stable urease activity of mycobacteria are presented. Clinical isolates (63) and stock cultures (32)--consisting of: M. tuberculosis (19), M. bovis (5), M. kansasii (15), M. marinum (4), M. simiae (3), M. scrofulaceum (16), M. gordonae (6), M. szulgai (6), M. flavescens (1), M. gastri (1), M. intracellulare (6), M. fortuitum-chelonei complex (12), and M. smegmatis (1)--were tested for neat urease activity by Bactec radiometry. Mycobacterial isolates (50-100 mg wet weight) were incubated at 35 degrees C for 30 minutes with microCi14C-urea. Urease-positive mycobacteria gave Bactec growth index (GI) values greater than 100 units, whereas urease-negative species gave values less than 10 GI units. Eighty-three isolates possessing neat urease activity were heated at 80 degrees C for 30 minutes followed by incubation at 35 degrees C for 30 minutes with 1 microCi14C-urea. Mycobacterium tuberculosis-bovis complex demonstrated heat-stable urease activity (GI more than 130 units) and could be distinguished from mycobacteria other than tuberculosis (MOTT), which gave GI values equal to or less than 40 units.

  17. SEARCHING FOR RAPID METHODS IN ENVIRONMENTAL BACTERIOLOGY

    EPA Science Inventory

    The search for rapid methods in sanitary bacteriology is more urgent today than ever before because of increased necessity for processing poorer quality source waters and controlling quality of sewage effluent discharges. Selection of criteria for rapid tests involving either mod...

  18. Rapid methods for identification of yeasts.

    PubMed Central

    Huppert, M; Harper, G; Sun, S H; Delanerolle, V

    1975-01-01

    Opportunistic infections by yeasts have been implicated as one of the major causes of complications in the compromised patient. Rapid recognition and identification of these yeasts is essential for patient management, but conventional liquid medium methods for completing identification tests are cumbersome and time consuming. Rapid tests have been devised based on modifications of methods commonly used in bacteriology. These rapid methods included tests for carbohydrate and nitrate assimilation, fermentation, and urease production. These were compared with several current methods for accuracy of results, for time to final identification, and for economy of time and reagents. In addition, the usual tests for pseudogerm tube formation, for production of hyphae or pseudohyphae, and for growth temperatures were included. The rapid tests achieved 96% or better accuracy compared with expected results, and 46 species of yeasts were identified in 1 to 2 days compared with the 10 to 14 days required by conventional liquid culture methods. Images PMID:1241586

  19. Simplified Vicarious Radiometric Calibration

    NASA Technical Reports Server (NTRS)

    Stanley, Thomas; Ryan, Robert; Holekamp, Kara; Pagnutti, Mary

    2010-01-01

    A measurement-based radiance estimation approach for vicarious radiometric calibration of spaceborne multispectral remote sensing systems has been developed. This simplified process eliminates the use of radiative transfer codes and reduces the number of atmospheric assumptions required to perform sensor calibrations. Like prior approaches, the simplified method involves the collection of ground truth data coincident with the overpass of the remote sensing system being calibrated, but this approach differs from the prior techniques in both the nature of the data collected and the manner in which the data are processed. In traditional vicarious radiometric calibration, ground truth data are gathered using ground-viewing spectroradiometers and one or more sun photometer( s), among other instruments, located at a ground target area. The measured data from the ground-based instruments are used in radiative transfer models to estimate the top-of-atmosphere (TOA) target radiances at the time of satellite overpass. These TOA radiances are compared with the satellite sensor readings to radiometrically calibrate the sensor. Traditional vicarious radiometric calibration methods require that an atmospheric model be defined such that the ground-based observations of solar transmission and diffuse-to-global ratios are in close agreement with the radiative transfer code estimation of these parameters. This process is labor-intensive and complex, and can be prone to errors. The errors can be compounded because of approximations in the model and inaccurate assumptions about the radiative coupling between the atmosphere and the terrain. The errors can increase the uncertainty of the TOA radiance estimates used to perform the radiometric calibration. In comparison, the simplified approach does not use atmospheric radiative transfer models and involves fewer assumptions concerning the radiative transfer properties of the atmosphere. This new technique uses two neighboring uniform

  20. TES radiometric assessment

    NASA Technical Reports Server (NTRS)

    Worden, H.; Sarkissian, E.; Bowman, K.; Fisher, B.; Rider, D.; Aumann, H. H.; Apolinski, M.; Debaca, R. C.; Gluck, S.; Madatyan, M.; McDuffie, J.; Tremblay, D.; Shephard, M.; Cady-Pereira, K.; Tobin, D.; Revercomb, H.

    2005-01-01

    TES is an infrared Fourier transform spectrometer on board the EOS-Aura spacecraft launched July 15, 2004. Improvements to the radiometric calibration and consequent assessment of radiometric accuracy have been on-going since launch.

  1. Detection of circulating immune complexes by Raji cell assay: comparison of flow cytometric and radiometric methods

    SciTech Connect

    Kingsmore, S.F.; Crockard, A.D.; Fay, A.C.; McNeill, T.A.; Roberts, S.D.; Thompson, J.M.

    1988-01-01

    Several flow cytometric methods for the measurement of circulating immune complexes (CIC) have recently become available. We report a Raji cell flow cytometric assay (FCMA) that uses aggregated human globulin (AHG) as primary calibrator. Technical advantages of the Raji cell flow cytometric assay are discussed, and its clinical usefulness is evaluated in a method comparison study with the widely used Raji cell immunoradiometric assay. FCMA is more precise and has greater analytic sensitivity for AHG. Diagnostic sensitivity by the flow cytometric method is superior in systemic lupus erythematosus (SLE), rheumatoid arthritis, and vasculitis patients: however, diagnostic specificity is similar for both assays, but the reference interval of FCMA is narrower. Significant correlations were found between CIC levels obtained with both methods in SLE, rheumatoid arthritis, and vasculitis patients and in longitudinal studies of two patients with cerebral SLE. The Raji cell FCMA is recommended for measurement of CIC levels to clinical laboratories with access to a flow cytometer.

  2. Comparison of thiaminase activity in fish using the radiometric and 4-nitrothiophenol colorimetric methods

    USGS Publications Warehouse

    Honeyfield, D.C.; Hanes, J.W.; Brown, L.; Kraft, C.E.; Begley, T.P.

    2010-01-01

    Thiaminase induced thiamine deficiency occurs in fish, humans, livestock and wild animals. A non-radioactive thiaminase assay was described in 2007, but a direct comparison with the radioactive 14C-thiamine method which has been in use for more than 30years has not been reported. The objective was to measure thiaminase activity in forage fish (alewife Alosa pseudoharengus, rainbow smelt Osmerus mordax, and slimy sculpin Cottus cognatus) consumed by predators that manifest thiamine deficiency using both methods. Modifications were made to the colorimetric assay to improve repeatability. Modification included a change in assay pH, enhanced sample clean-up, constant assay temperature (37??C), increase in the concentration of 4-nitrothiophenol (4NTP) and use of a spectrophotometer fitted with a 0.2cm cell. A strong relationship between the two assays was found for 51 alewife (R2=0.85), 36 smelt (R2=0.87) and 20 sculpin (R2=0.82). Thiaminase activity in the colorimetric assay was about 1000 times higher than activity measured by the radioactive method. Application of the assay to fish species from which no thiaminase activity has previously been reported resulted in no 4NTP thiaminase activity being found in bloater Coregonus hoyi, lake trout Salvelinus namaycusch, steelhead trout Oncorhynchus mykiss or Chinook salmon Oncorhynchus tshawytscha. In species previously reported to contain thiaminase, 4NTP thiaminase activity was measured in bacteria Paenibacillus thiaminolyticus, gizzard shad Dorosoma cepedianum, bracken fern Pteridium aquilinum, quagga mussel Dreissena bugensis and zebra mussels D. polymorpha. ?? 2010.

  3. Radiometric method for determining concentration of naturally occurring isotopes and device therefor

    SciTech Connect

    Yakubovich, S.L.; Gerling, V.E.; Golubnichy, V.V.; Kotsen, M.E.; Stepanov, J.N.

    1984-10-09

    The proposed method essentially consists in that a sample of a substance is placed between two scintillators in immediate contact therewith whereupon said sample is hermetically sealed. Arranged in close proximity to each scintillator is a photomultiplier tube recording ionizing ..cap alpha..- and b-radiation. A selector is utilized to select pulses corresponding to ..cap alpha..- and b-particles, and delayed coincidence circuits of a recording element separate and record b-..cap alpha.. and ..cap alpha..-..cap alpha.. cascade pairs of delayed coincidences of RaC, ThC, and AcA radionuclides. Flows are measured twice at a predetermined time interval to account for emanation build-up tendency and concentration of isotopes of radium is determined from a formula.

  4. Rapid methods and automation in dairy microbiology.

    PubMed

    Vasavada, P C

    1993-10-01

    The importance of microbiology to the dairy industry has been demonstrated by recent outbreaks of foodborne illness associated with consumption of milk and dairy products that had been contaminated with pathogenic organisms or toxins. Undesirable microorganisms constitute the primary hazard to safety, quality, and wholesomeness of milk and dairy foods. Consequently, increased emphasis has been placed on the microbiological analysis of milk and dairy products designed to evaluate quality and to ensure safety and regulatory compliance. The focus of dairy microbiology, however, remains largely on conventional methods: plate counts, most probable numbers, and dye reduction tests. These methods are slow, tedious, intensive in their requirements for material and labor, and often not suitable for assessing the quality and shelf-life of perishable dairy foods. With the exception of coliforms, Salmonella, and Staphylococcus aureus, isolation and characterization of various organisms occurring in milk and milk products are seldom a part of the routine microbiological analysis in the dairy industry. Recent emphasis on the programs based on HACCP (Hazard Analysis and Critical Control Points) for total quality management in the dairy industry and increased demand for microbiological surveillance of products, process, and environment have led to increased interest in rapid methods and automation in microbiology. Several methods for rapid detection, isolation, enumeration, and characterization of microorganisms are being adapted by the dairy industry. This presentation reviews rapid methods and automation in microbiology for microbiological analysis of milk and dairy products. PMID:8227634

  5. Methods of Recording Rapid Wind Changes

    NASA Technical Reports Server (NTRS)

    Magnan, A

    1932-01-01

    The purpose of our research was to determine the rapid changes of air currents which impose varying stresses on the wings of airplanes. We attempted to express in figures the turbulence of the air, which perhaps plays some role in the behavior of airplanes in flight, as well as in the realization of certain methods of gliding flight. This is the reason which led us to conceive and develop the experimental equipment (hot-wire anemometer) described herein.

  6. Rapid Column Extraction method for SoilRapid Column Extraction method for Soil

    SciTech Connect

    Maxwell, Sherrod, L. III; Culligan, Brian K.

    2005-11-07

    The analysis of actinides in environmental soil and sediment samples is very important for environmental monitoring as well as for emergency preparedness. A new, rapid actinide separation method has been developed and implemented that provides total dissolution of large soil samples, high chemical recoveries and effective removal of matrix interferences. This method uses stacked TEVA Resin{reg_sign}, TRU Resin{reg_sign} and DGA-Resin{reg_sign} cartridges from Eichrom Technologies (Darien, IL, USA) that allows the rapid separation of plutonium (Pu) neptunium (Np), uranium (U), americium (Am), and curium (Cm) using a single multi-stage column combined with alpha spectrometry. The method combines a rapid fusion step for total dissolution to dissolve refractory analytes and matrix removal using cerium fluoride precipitation to remove the difficult soil matrix. By using vacuum box cartridge technology with rapid flow rates, sample preparation time is minimized.

  7. Rapid Column Extraction Methods for Urine

    SciTech Connect

    Maxwell, S.L. III

    2000-06-09

    A new fecal analysis method that dissolves plutonium oxide was developed at the Westinghouse Savannah River Site. Diphonix Resin (Eichrom Industries), is used to pre-concentrate the actinides from digested fecal samples. A rapid microwave digestion technique is used to remove the actinides from the Diphonix Resin, which effectively extracts plutonium and americium from acidic solutions containing hydrofluoric acid. After resin digestion, the plutonium and americium are recovered in a small volume of nitric acid that is loaded onto small extraction chromatography columns, TEVA Resin and TRU Resin (Eichrom Industries). The method enables complete dissolution of plutonium oxide and provides high recovery of plutonium and americium with good removal of thorium isotopes such as thorium-228.

  8. Simple rapid method for gene transfer

    SciTech Connect

    Cockburn, A.F.; Meier, H.

    1990-01-30

    The object of the present invention is to provide methods for gene transfer that reduce or eliminate cellular pretreatment steps, e.g., the removal of cell wall by chemical or enzymatic methods, is rapid and can be practiced without the need of additional expensive equipment. Cells, embryos or tissues selected for genetic manipulation are suspended in an Eppendorf tube in an aliquot of the desired genetic material to be transferred to which the resulting mixture is added and is agitated by vortexing from about 30 to about 90 seconds. The cells, embryos or tissue are sedimented and the DNA supernatant removed. After sedimentation, the injected material is resuspended in or on a growth medium to assay for expression.

  9. Patch Antenna for Measuring the Internal Temperature of Biological Objects Using the Near-Field Microwave Radiometric Method

    NASA Astrophysics Data System (ADS)

    Ubaichin, A.; Bespalko, A.; Filatov, A.; Alexeev, E.; Zhuk, G.

    2016-01-01

    The near-field microwave antenna with central frequency of 2.23 GHz has been designed and manufactured to be used as a part of the medical microwave radiometric system. Experimental studies of the reflection coefficient in different parts of the human body were conducted using the developed antenna. The experimental studies were carried out in a group of volunteers with normal somatic growth. The results of the experiments were used to perform the analysis of the potential errors in the measurements obtained via the developed antenna.

  10. A rapid method for airborne tritium analysis

    SciTech Connect

    Hofstetter, K.J.; Wilson, H.T. )

    1991-11-01

    Tritium is one of the principal radionuclides released to the environment from nuclear fuel and target reprocessing, heavy-water production, and other nuclear industry operations. For example, the majority of the off-site dose to the public at the Savannah River site (SRS) in 1988 was from tritium oxide (HTO). The absorbed dose is highly dependent on chemical form; HTO is 10,000 more hazardous than the elemental form (HT). Commercially available tritium monitors do not discriminate between chemical form and have high detection limits. Consequently, tedious laboratory methods must be used to analyze HTO in air. Desiccants are used to remove all the water from an air sample. The tritiated water is then desorbed and analyzed by liquid scintillation spectrometry. The method is complex and takes several hours to complete. During an unplanned release, present-time atmospheric tritium concentrations are never available. To improve emergency response capabilities, a rapid sampling and analysis method was developed for measuring low-level HTO concentrations in air. Standard desiccant sampling and water desorption procedure was modified for use in the SRS mobile laboratory, which is equipped with a liquid scintillation counter. These tests indicate that an HTO concentration of 0.2% DCG (7 Bq/m{sup 3}) can be detected by this method with a 10-min sample collection time and a 10-min count.

  11. Effectiveness and cost of rapid and conventional laboratory methods for Mycobacterium tuberculosis screening.

    PubMed Central

    Heymann, S J; Brewer, T F; Ettling, M

    1997-01-01

    OBJECTIVE: Because delay in the diagnosis of tuberculosis (TB) contributes to the spread of disease and the associated mortality risk, the authors examined the effectiveness and cost of recent advances in methods of diagnosing TB and testing for drug susceptibility, comparing these rapid methods to traditional approaches. METHODS: Decision analysis was used to compare newer rapid and older nonrapid methods for diagnosing TB and testing for drug susceptibility. The average time to diagnosis, average time to treatment, average mortality, and cost of caring for patients evaluated for TB were compared. RESULTS: Using a combination of solid medium and broth cultures, nucleic acid probes for identification, and radiometric broth drug susceptibility testing would lead to diagnosis on average 15 days faster and to appropriate therapy on average five days sooner than methods currently employed by many U.S. laboratories. The average mortality would drop by five patients per 1000 patients evaluated (31%) and the average cost per patient would drop by $272 (18%). CONCLUSIONS: In this era of cost containment, it is important to incorporate test sensitivity and specificity when evaluating technologies. Tests with higher unit costs may lead to lower medical expenditures when diagnostic accuracy and speed are improved. U.S. laboratories should employ available rapid techniques for the diagnosis of TB. PMID:10822480

  12. Radiometric correction procedure study

    NASA Technical Reports Server (NTRS)

    Colby, C.; Sands, R.; Murphrey, S.

    1978-01-01

    A comparison of MSS radiometric processing techniques identified as a preferred radiometric processing technique a procedure which equalizes the mean and standard deviation of detector-specific histograms of uncalibrated scene data. Evaluation of MSS calibration data demonstrated that the relationship between detector responses is essentially linear over the range of intensities typically observed in MSS data, and that the calibration wedge data possess a high degree of temporal stability. An analysis of the preferred radiometric processing technique showed that it could be incorporated into the MDP-MSS system without a major redesign of the system, and with minimal impact on system throughput.

  13. A Rapid Method for Isolating Glandular Trichomes

    PubMed Central

    Yerger, Ellen H.; Grazzini, Richard A.; Hesk, David; Cox-Foster, Diana L.; Craig, Richard; Mumma, Ralph O.

    1992-01-01

    A physical method is described for the rapid isolation of plant trichomes, with emphasis on stalked glandular types. The technique involved breaking frozen trichomes with powdered dry ice and collection of glandular heads by sieving from larger tissue fragments. This method was applied to several plants that bear similar stalked trichomes: geranium (Pelargonium), potato (Solanum tuberosum), tomato (Lycopersicon esculentum), squash (Cucurbita pepo), and velvetleaf (Abutilon theophrasti). The tissue preparation was of sufficient quality without further purification for biochemical and molecular studies. The preparation maintained the biochemical integrity of the trichomes for active enzymes and usable nucleic acids. A large quantity of tissue can be harvested; for example, 351 milligrams dry weight of glandular trichomes were harvested from geranium pedicels in 12 hours. The utility of the technique was demonstrated by examining the fatty acid composition of tall glandular trichomes of geraniums, Pelargonium ×hortorum L.H. Bailey. These purified cells contained high concentrations of unusual ω5-unsaturated fatty acids, proportionally 23.4% of total fatty acids in the trichomes. When the trichomes were removed, the supporting tissue contained no ω5-fatty acids, thereby unequivocally localizing ω5-fatty acids to the trichomes. Because ω5-fatty acids are unique precursors for the biosynthesis of ω5-anacardic acids, we conclude that anacardic acid synthesis must occur in the glandular trichomes. ImagesFigure 1Figure 2 PMID:16668834

  14. Digital correction of geometric and radiometric errors in ERTS data.

    NASA Technical Reports Server (NTRS)

    Bakis, R.; Wesley, M. A.; Will, P. M.

    1971-01-01

    The sensor systems of the ERTS-A satellite are discussed and sources of geometric and radiometric errors in the received images are identified. Digital algorithms are presented for detection of reseau and ground control points, for rapid implementation of geometric corrections, and for radiometric correction of errors caused by shading, image motion, modulation transfer function, and quantum and systematic noise.

  15. Results of magnetic HGI and radiometric surveys in W. Canada

    SciTech Connect

    LeSchack, L.A.

    1997-05-19

    This article presents four case histories in which ground-based magnetic horizontal gradient intensity (HGI) and radiometric surveys were used in Western Canada for cost-effective geochemical exploration for hydrocarbons. The authors has developed these two surface exploration techniques from published studies and adapted them for use on the prairies the past 7 years. These surveys are used in conjunction with the usual geologic and seismic studies for: (1) evaluating prospects and land; (2) verifying seismic anomalies and inexpensively locating areas for conducting expensive 3D seismic surveys. Occasionally, as in two of the case histories discussed, these surveys were used successfully as stand-alone exploration methods where seismic exploration is not effective. The HGI and radiometric surveys measure, by geophysical methods, those effects associated with geochemical alterations due to vertical microseepage of hydrocarbons. The total cost, including permitting, data acquisition, data processing, and interpretation of the combination HGI and radiometric surveys is about 15% the total cost of a 3D seismic survey. Because of this, the author finds them an attractive and rapid survey adjunct to traditional exploration. They substantially reduce finding costs and significantly raise the probability of financial success.

  16. Radiometric assays for glycerol, glucose, and glycogen.

    PubMed

    Bradley, D C; Kaslow, H R

    1989-07-01

    We have developed radiometric assays for small quantities of glycerol, glucose and glycogen, based on a technique described by Thorner and Paulus (1971, J. Biol. Chem. 246, 3885-3894) for the measurement of glycerokinase activity. In the glycerol assay, glycerol is phosphorylated with [32P]ATP and glycerokinase, residual [32P]ATP is hydrolyzed by heating in acid, and free [32P]phosphate is removed by precipitation with ammonium molybdate and triethylamine. Standard dose-response curves were linear from 50 to 3000 pmol glycerol with less than 3% SD in triplicate measurements. Of the substances tested for interference, only dihydroxyacetone gave a slight false positive signal at high concentration. When used to measure glycerol concentrations in serum and in media from incubated adipose tissue, the radiometric glycerol assay correlated well with a commonly used spectrophotometric assay. The radiometric glucose assay is similar to the glycerol assay, except that glucokinase is used instead of glycerokinase. Dose response was linear from 5 to 3000 pmol glucose with less than 3% SD in triplicate measurements. Glucosamine and N-acetylglucosamine gave false positive signals when equimolar to glucose. When glucose concentrations in serum were measured, the radiometric glucose assay agreed well with hexokinase/glucose-6-phosphate dehydrogenase (H/GDH)-based and glucose oxidase/H2O2-based glucose assays. The radiometric method for glycogen measurement incorporates previously described isolation and digestion techniques, followed by the radiometric assay of free glucose. When used to measure glycogen in mouse epididymal fat pads, the radiometric glycogen assay correlated well with the H/GDH-based glycogen assay. All three radiometric assays offer several practical advantages over spectral assays. PMID:2817333

  17. Radiometric assays for glycerol, glucose, and glycogen

    SciTech Connect

    Bradley, D.C.; Kaslow, H.R. )

    1989-07-01

    We have developed radiometric assays for small quantities of glycerol, glucose and glycogen, based on a technique described by Thorner and Paulus for the measurement of glycerokinase activity. In the glycerol assay, glycerol is phosphorylated with (32P)ATP and glycerokinase, residual (32P)ATP is hydrolyzed by heating in acid, and free (32P)phosphate is removed by precipitation with ammonium molybdate and triethylamine. Standard dose-response curves were linear from 50 to 3000 pmol glycerol with less than 3% SD in triplicate measurements. Of the substances tested for interference, only dihydroxyacetone gave a slight false positive signal at high concentration. When used to measure glycerol concentrations in serum and in media from incubated adipose tissue, the radiometric glycerol assay correlated well with a commonly used spectrophotometric assay. The radiometric glucose assay is similar to the glycerol assay, except that glucokinase is used instead of glycerokinase. Dose response was linear from 5 to 3000 pmol glucose with less than 3% SD in triplicate measurements. Glucosamine and N-acetylglucosamine gave false positive signals when equimolar to glucose. When glucose concentrations in serum were measured, the radiometric glucose assay agreed well with hexokinase/glucose-6-phosphate dehydrogenase (H/GDH)-based and glucose oxidase/H2O2-based glucose assays. The radiometric method for glycogen measurement incorporates previously described isolation and digestion techniques, followed by the radiometric assay of free glucose. When used to measure glycogen in mouse epididymal fat pads, the radiometric glycogen assay correlated well with the H/GDH-based glycogen assay. All three radiometric assays offer several practical advantages over spectral assays.

  18. Microwave radiometric systems.

    NASA Technical Reports Server (NTRS)

    Barath, F. T.

    1972-01-01

    Microwave radiometers measure thermal electromagnetic radiation at frequencies ranging over the entire radio spectrum, from audio to infrared. The temperatures of black-body radiators can be measured with sensitivities better than 0.01 K, and with absolute accuracies better than 0.5 K. Radiometric systems have been built with as many as 400 independent spectral channels. Frequency resolutions range from hertz to gigahertz; and integration times range from microseconds to hours. Radiometric systems have operated reliably on the ground, and in balloons, aircraft, and spacecraft, including the 1962 Mariner 2 planetary probe to Venus.

  19. Small satellite radiometric measurements

    SciTech Connect

    Weber, P.G.

    1991-01-01

    A critical need for the Mission to Planet Earth is to provide continuous, well-calibrated radiometric data for the radiation budget. This paper describes a new, compact, flexible radiometer which will provide both spectrally integrated data and data in selected spectral bands. The radiometer design is suitable for use on small satellites, aircraft, or remotely piloted vehicles (RPVs). 12 refs., 2 figs.

  20. Methods and compositions for rapid thermal cycling

    SciTech Connect

    Beer, Neil Reginald; Benett, William J.; Frank, James M.; Deotte, Joshua R.; Spadaccini, Christopher

    2015-10-27

    The rapid thermal cycling of a material is targeted. A microfluidic heat exchanger with an internal porous medium is coupled to tanks containing cold fluid and hot fluid. Fluid flows alternately from the cold tank and the hot tank into the porous medium, cooling and heating samples contained in the microfluidic heat exchanger's sample wells. A valve may be coupled to the tanks and a pump, and switching the position of the valve may switch the source and direction of fluid flowing through the porous medium. A controller may control the switching of valve positions based on the temperature of the samples and determined temperature thresholds. A sample tray for containing samples to be thermally cycled may be used in conjunction with the thermal cycling system. A surface or internal electrical heater may aid in heating the samples, or may replace the necessity for the hot tank.

  1. METHODS FOR RAPID IDENTIFICATION OF VIRUSES

    EPA Science Inventory

    The progress made in the last few years in methods for direct detection of viruses in clinical samples, without the need for in vitro culture, suggests that they will be applicable to at least some types of environmental samples. The methods for detecting viral antigen include: r...

  2. Method for rapid isolation of sensitive mutants

    DOEpatents

    Freyer, James P.

    1997-01-01

    Sensitive mammalian cell mutants are rapidly isolated using flow cytometry. A first population of clonal spheroids is established to contain both normal and mutant cells. The population may be naturally occurring or may arise from mutagenized cells. The first population is then flow sorted by size to obtain a second population of clonal spheroids of a first uniform size. The second population is then exposed to a DNA-damaging agent that is being investigated. The exposed second population is placed in a growth medium to form a third population of clonal spheroids comprising spheroids of increased size from the mammalian cells that are resistant to the DNA-damaging agent and spheroids of substantially the first uniform size formed from the mammalian cells that are sensitive to the DNA-damaging agent. The third population is not flow sorted to differentiate the spheroids formed from resistant mammalian cells from spheroids formed from sensitive mammalian cells. The spheroids formed from sensitive mammalian cells are now treated to recover viable sensitive cells from which a sensitive cell line can be cloned.

  3. Method for rapid isolation of sensitive mutants

    DOEpatents

    Freyer, J.P.

    1997-07-29

    Sensitive mammalian cell mutants are rapidly isolated using flow cytometry. A first population of clonal spheroids is established to contain both normal and mutant cells. The population may be naturally occurring or may arise from mutagenized cells. The first population is then flow sorted by size to obtain a second population of clonal spheroids of a first uniform size. The second population is then exposed to a DNA-damaging agent that is being investigated. The exposed second population is placed in a growth medium to form a third population of clonal spheroids comprising spheroids of increased size from the mammalian cells that are resistant to the DNA-damaging agent and spheroids of substantially the first uniform size formed from the mammalian cells that are sensitive to the DNA-damaging agent. The third population is not flow sorted to differentiate the spheroids formed from resistant mammalian cells from spheroids formed from sensitive mammalian cells. The spheroids formed from sensitive mammalian cells are now treated to recover viable sensitive cells from which a sensitive cell line can be cloned. 15 figs.

  4. Rapid vegetative propagation method for carob

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Many fruit species are propagated by vegetative methods such as budding, grafting, cutting, suckering, layering etc. to avoid heterozygosity. Carob trees (Ceratonia siliqua L.) are of highly economical value and it is among the most difficult-to-propagate fruit species. In this study, air-layering p...

  5. A method for sensible heat flux model parameterization based on radiometric surface temperature and environmental factors without involving the parameter KB-1

    NASA Astrophysics Data System (ADS)

    Zhuang, Qifeng; Wu, Bingfang; Yan, Nana; Zhu, Weiwei; Xing, Qiang

    2016-05-01

    Sensible heat flux is a key component of land-atmosphere interaction. In most parameterizations it is calculated with surface-air temperature differences and total aerodynamic resistance to heat transfer (Rae) that is related to the KB-1 parameter. Suitable values are hard to obtain since KB-1 is related both to canopy characteristics and environmental conditions. In this paper, a parameterize method for sensible heat flux over vegetated surfaces (maize field and grass land in the Heihe river basin of northwest China) was proposed based on the radiometric surface temperature, surface resistance (Rs) and vapor pressures (saturated and actual) at the surface and the atmosphere above the canopy. A biophysics-based surface resistance model was revised to compute surface resistance with several environmental factors. The total aerodynamic resistance to heat transfer is directly calculated by combining the biophysics-based surface resistance and vapor pressures. One merit of this method is that the calculation of KB-1 can be avoided. The method provides a new way to estimate sensible heat flux over vegetated surfaces and its performance compares well to the LAS measured sensible heat and other empirical or semi-empirical KB-1 based estimations.

  6. Method and system rapid piece handling

    DOEpatents

    Spletzer, Barry L.

    1996-01-01

    The advent of high-speed fabric cutters has made necessary the development of automated techniques for the collection and sorting of garment pieces into collated piles of pieces ready for assembly. The present invention enables a new method for such handling and sorting of garment parts, and to apparatus capable of carrying out this new method. The common thread is the application of computer-controlled shuttling bins, capable of picking up a desired piece of fabric and dropping it in collated order for assembly. Such apparatus with appropriate computer control relieves the bottleneck now presented by the sorting and collation procedure, thus greatly increasing the overall rate at which garments can be assembled.

  7. Relative radiometric calibration of LANDSAT TM reflective bands

    NASA Technical Reports Server (NTRS)

    Barker, J. L.

    1984-01-01

    A common scientific methodology and terminology is outlined for characterizing the radiometry of both TM sensors. The magnitude of the most significant sources of radiometric variability are discussed and methods are recommended for achieving the exceptional potential inherent in the radiometric precision and accuracy of the TM sensors.

  8. Method for large and rapid terahertz imaging

    DOEpatents

    Williams, Gwyn P.; Neil, George R.

    2013-01-29

    A method of large-scale active THz imaging using a combination of a compact high power THz source (>1 watt), an optional optical system, and a camera for the detection of reflected or transmitted THz radiation, without the need for the burdensome power source or detector cooling systems required by similar prior art such devices. With such a system, one is able to image, for example, a whole person in seconds or less, whereas at present, using low power sources and scanning techniques, it takes several minutes or even hours to image even a 1 cm.times.1 cm area of skin.

  9. Expediting systematic reviews: methods and implications of rapid reviews

    PubMed Central

    2010-01-01

    Background Policy makers and others often require synthesis of knowledge in an area within six months or less. Traditional systematic reviews typically take at least 12 months to conduct. Rapid reviews streamline traditional systematic review methods in order to synthesize evidence within a shortened timeframe. There is great variation in the process of conducting rapid reviews. This review sought to examine methods used for rapid reviews, as well as implications of methodological streamlining in terms of rigour, bias, and results. Methods A comprehensive search strategy--including five electronic databases, grey literature, hand searching of relevant journals, and contacting key informants--was undertaken. All titles and abstracts (n = 1,989) were reviewed independently by two reviewers. Relevance criteria included articles published between 1995 and 2009 about conducting rapid reviews or addressing comparisons of rapid reviews versus traditional reviews. Full articles were retrieved for any titles deemed relevant by either reviewer (n = 70). Data were extracted from all relevant methodological articles (n = 45) and from exemplars of rapid review methods (n = 25). Results Rapid reviews varied from three weeks to six months; various methods for speeding up the process were employed. Some limited searching by years, databases, language, and sources beyond electronic searches. Several employed one reviewer for title and abstract reviewing, full text review, methodological quality assessment, and/or data extraction phases. Within rapid review studies, accelerating the data extraction process may lead to missing some relevant information. Biases may be introduced due to shortened timeframes for literature searching, article retrieval, and appraisal. Conclusions This review examined the continuum between diverse rapid review methods and traditional systematic reviews. It also examines potential implications of streamlined review methods. More of these rapid reviews need

  10. RADIOMETRIC METHOD FOR THE DETERMINATION OF URANIUM IN WATER: SINGLE-LABORATORY EVALUATION AND INTERLABORATORY COLLABORATIVE STUDY

    EPA Science Inventory

    The results of a single-laboratory evaluation and an inter-laboratory collaborative study of a method for determining uranium in water are reported. The method consists of coprecipitation of uranium with ferrous hydroxide, a nitric-hydrofluoric acid dissolution if the sample cont...

  11. RADIOMETRIC METHOD FOR THE DETERMINATION OF URANIUM IN SOIL AND AIR: SINGLE-LABORATORY EVALUATION AND INTERLABORATORY COLLABORATIVE STUDY

    EPA Science Inventory

    Results of a single-laboratory evaluation and an interlaboratory collaborative study of a method for determining uranium isotopes in soil and air samples are presented. The method is applicable to 10-gram soil samples and to both glass fiber and polystyrene air filter samples. Sa...

  12. Multicenter Laboratory Validation of Susceptibility Testing of Mycobacterium tuberculosis against Classical Second-Line and Newer Antimicrobial Drugs by Using the Radiometric BACTEC 460 Technique and the Proportion Method with Solid Media

    PubMed Central

    Pfyffer, Gaby E.; Bonato, Donald A.; Ebrahimzadeh, Adeleh; Gross, Wendy; Hotaling, Jacqueline; Kornblum, John; Laszlo, Adalbert; Roberts, Glenn; Salfinger, Max; Wittwer, Franziska; Siddiqi, Salman

    1999-01-01

    In a large multicenter study involving six major study sites in the United States, Canada, and Europe, the susceptibilities of 272 Mycobacterium tuberculosis strains to classical second-line antituberculosis (anti-TB) drugs (capreomycin, cycloserine, ethionamide, and kanamycin) and newer compounds (amikacin, clofazimine, ofloxacin, and rifabutin) were determined by the radiometric BACTEC 460 procedure and the conventional proportion method on Middlebrook 7H10 agar. Previously established critical concentrations for classical second-line anti-TB drugs were compared with several concentrations in liquid medium to establish equivalence. MICs of newer compounds determined in liquid medium were either the same or up to four times lower than those determined in agar medium. After establishing critical concentrations (breakpoints) in the extended testing of clinical isolates, we obtained an excellent overall correlation between the two systems, with no errors with amikacin, kanamycin, and ofloxacin and very few major or very major errors with the other drugs; however, for cycloserine, no breakpoint concentration could be recommended due to repeatedly inconsistent results by both methods. Based on these data we conclude that the BACTEC 460 procedure is a simple and rapid method requiring 4 to 8 days on average to generate accurate antimicrobial susceptibility testing (AST) results for eight anti-TB drugs other than those considered primary ones. These data not only fill a major gap of knowledge regarding the critical test concentrations of secondary anti-TB drugs but also provide a baseline for future evaluations of M. tuberculosis AST with the more recently developed, nonradiometric broth-based culture systems. PMID:10488174

  13. Radiometric sounding system

    SciTech Connect

    Whiteman, C.D.; Anderson, G.A.; Alzheimer, J.M.; Shaw, W.J.

    1995-04-01

    Vertical profiles of solar and terrestrial radiative fluxes are key research needs for global climate change research. These fluxes are expected to change as radiatively active trace gases are emitted to the earth`s atmosphere as a consequence of energy production and industrial and other human activities. Models suggest that changes in the concentration of such gases will lead to radiative flux divergences that will produce global warming of the earth`s atmosphere. Direct measurements of the vertical variation of solar and terrestrial radiative fluxes that lead to these flux divergences have been largely unavailable because of the expense of making such measurements from airplanes. These measurements are needed to improve existing atmospheric radiative transfer models, especially under the cloudy conditions where the models have not been adequately tested. A tethered-balloon-borne Radiometric Sounding System has been developed at Pacific Northwest Laboratory to provide an inexpensive means of making routine vertical soundings of radiative fluxes in the earth`s atmospheric boundary layer to altitudes up to 1500 m above ground level. Such vertical soundings would supplement measurements being made from aircraft and towers. The key technical challenge in the design of the Radiometric Sounding System is to develop a means of keeping the radiometers horizontal while the balloon ascends and descends in a turbulent atmospheric environment. This problem has been addressed by stabilizing a triangular radiometer-carrying platform that is carried on the tetherline of a balloon sounding system. The platform, carried 30 m or more below the balloon to reduce the balloon`s effect on the radiometric measurements, is leveled by two automatic control loops that activate motors, gears and pulleys when the platform is off-level. The sensitivity of the automatic control loops to oscillatory motions of various frequencies and amplitudes can be adjusted using filters.

  14. Kernel MAD Algorithm for Relative Radiometric Normalization

    NASA Astrophysics Data System (ADS)

    Bai, Yang; Tang, Ping; Hu, Changmiao

    2016-06-01

    The multivariate alteration detection (MAD) algorithm is commonly used in relative radiometric normalization. This algorithm is based on linear canonical correlation analysis (CCA) which can analyze only linear relationships among bands. Therefore, we first introduce a new version of MAD in this study based on the established method known as kernel canonical correlation analysis (KCCA). The proposed method effectively extracts the non-linear and complex relationships among variables. We then conduct relative radiometric normalization experiments on both the linear CCA and KCCA version of the MAD algorithm with the use of Landsat-8 data of Beijing, China, and Gaofen-1(GF-1) data derived from South China. Finally, we analyze the difference between the two methods. Results show that the KCCA-based MAD can be satisfactorily applied to relative radiometric normalization, this algorithm can well describe the nonlinear relationship between multi-temporal images. This work is the first attempt to apply a KCCA-based MAD algorithm to relative radiometric normalization.

  15. COMPARISON BETWEEN ELLMAN AND RADIOMETRIC METHODS FOR ASSESSING CHOLINESTERASE (CHE) INHIBITION IN RATS TREATED WITH N-METHYL CARBAMATE INSECTICIDES.

    EPA Science Inventory

    Carbamylated ChE is unstable and readily reactivates. This reactivation, promoted by increasing temperature and dilution, could have an impact on ex vivo ChE assays by decreasing apparent ChE inhibition. To assess the best method for measuring ChE inhibition in brain and RBCs f...

  16. A Rapid Method for Assaying Thiaminase I Activity in Diverse Biological Samples

    PubMed Central

    Kraft, Clifford E.; Gordon, Eric R. L.; Angert, Esther R.

    2014-01-01

    Vitamin B1 (thiamine) deficiencies can lead to neurological disorders, reproductive failure and death in wild and domestic animal populations. In some cases, disease is brought about by the consumption of foods high in thiaminase I activity. Levels of thiaminase activity in these foods are highly variable and the factors leading to production of this enzyme are poorly understood. Here we describe improvements in a spectrophotometric thiaminase I activity assay that measures the disappearance of 4-nitrothiophenol, a favored nucleophile co-substrate that replaces the thiazole portion of thiamine during the inactivation of thiamine by the enzyme. Scalable sample processing protocols and a 96-well microtiter plate format are presented that allow the rapid evaluation of multiple, replicated samples in the course of only a few hours. Observed levels of activity in bacterial culture supernatant, fish, ferns and molluscs using this colorimetric assay were similar to previously published reports that employed a radiometric method. Organisms devoid of thiaminase I, based upon previous work, showed no activity with this assay. In addition, activity was found in a variety of fishes and one fern species from which this enzyme had not previously been reported. Overall, we demonstrate the suitability of this technique for measuring thiaminase I activity within small amounts of tissue and environmental samples with replication levels that were heretofore prohibitive. The assay provides a considerable improvement in the ability to examine and understand the properties of an enzyme that has a substantial influence on organism and ecosystem health. PMID:24675843

  17. Dating human skeletal remains using a radiometric method: biogenic versus diagenetic 90Sr and 210Pb in vertebrae.

    PubMed

    Schrag, Bettina; Uldin, Tanya; Mangin, Patrice; Froidevaux, Pascal

    2012-07-10

    In forensic science, there is a strong interest in determining the post-mortem interval (PMI) of human skeletal remains up to 50 years after death. Currently, there are no reliable methods to resolve PMI, the determination of which relies almost exclusively on the experience of the investigating expert. Here we measured (90)Sr and (210)Pb ((210)Po) incorporated into bones through a biogenic process as indicators of the time elapsed since death. We hypothesised that the activity of radionuclides incorporated into trabecular bone will more accurately match the activity in the environment and the food chain at the time of death than the activity in cortical bone because of a higher remodelling rate. We found that determining (90)Sr can yield reliable PMI estimates as long as a calibration curve exists for (90)Sr covering the studied area and the last 50 years. We also found that adding the activity of (210)Po, a proxy for naturally occurring (210)Pb incorporated through ingestion, to the (90)Sr dating increases the reliability of the PMI value. Our results also show that trabecular bone is subject to both (90)Sr and (210)Po diagenesis. Accordingly, we used a solubility profile method to determine the biogenic radionuclide only, and we are proposing a new method of bone decontamination to be used prior to (90)Sr and (210)Pb dating. PMID:22497702

  18. RAPID METHOD FOR DETERMINATION OF RADIOSTRONTIUM IN EMERGENCY MILK SAMPLES

    SciTech Connect

    Maxwell, S.; Culligan, B.

    2008-07-17

    A new rapid separation method for radiostrontium in emergency milk samples was developed at the Savannah River Site (SRS) Environmental Bioassay Laboratory (Aiken, SC, USA) that will allow rapid separation and measurement of Sr-90 within 8 hours. The new method uses calcium phosphate precipitation, nitric acid dissolution of the precipitate to coagulate residual fat/proteins and a rapid strontium separation using Sr Resin (Eichrom Technologies, Darien, IL, USA) with vacuum-assisted flow rates. The method is much faster than previous method that use calcination or cation exchange pretreatment, has excellent chemical recovery, and effectively removes beta interferences. When a 100 ml sample aliquot is used, the method has a detection limit of 0.5 Bq/L, well below generic emergency action levels.

  19. An alternative method for the estimation of sedimentation rates using radiometric measurements in an intertidal region (sw of spain)

    NASA Astrophysics Data System (ADS)

    Ligero, Rufino; Casas-Ruiz, Melquiades; Barrera, Manuel; Barbero, Luis

    2010-05-01

    The techniques for the direct measurement of the sedimentation rate are reliable but slow and imprecise, given that the time intervals of measurement cannot be very long. Consequently it is an extremely laborious task to obtain a representative map of the sedimentation rates and such maps are available for very few zones. However, for most environmental studies, it is very important to know the sedimentation rates. The high degree of accuracy of the gamma spectrometric techniques together with the application of the model describes in this work, has allowed the determination of the sedimentation rates in a wide spatial area such of the Bay of Cadiz to be obtained with precision and consuming considerably less time in comparison to the traditional techniques. Even so, the experimental conditions required for the sample cores are fairly restrictive, and although the radiological method provides a quantitative advance in measurement, the experimental difficulty in the execution of the study is not greatly diminished. For this reason, a second model has been derived based on the measurement of the inventory, which offers economies in time and financial cost, and which allows the sedimentation rate in a region to be determined with satisfactory accuracy. Furthermore, it has been shown that the application of this model requires a precise determination of 137Cs inventories. The sedimentation rates estimated by the 137Cs inventory method ranged from 0.26 cm/year to 1.72 cm/year. The average value of the sedimentation rate obtained is 0.59 cm/year, and this rate has been compared with those resulting from the application of the 210Pb dating technique. A good agreement between the two procedures has been found. From the study carried out, it has been possible for the first time, to draw a map of sedimentation rates for this zone where numerous physical-chemical, oceanographic and ecological studies converge, since it is situated in a region of great environmental interest

  20. Application of non-radiometric methods to the determination of plutonium. Literature review conducted for the Buried Waste Integrated Program

    SciTech Connect

    Edelson, M.C.

    1992-03-05

    This literature review was motivated by discussions that took place during a review of contamination control technologies proposed for INEL (buried waste). It should be a useful tool in identifying non-radiation measurement techniques for Pu and Am such as ICP-MS, which should fulfill the following criteria: apparatus must be field deployable; up to 100 samples per day; and lower levels of detection and required time must be listed. The sensitivity of ICP and RIMS is compared against that needed for contamination monitoring at INEL. Only Pu-241, with a required detection limit of 400 ppt, would challenge the sensitivity of ICP-MS; Pu-238 would be easily determined. The need to determine Pu-238 and Am-241 in the presence of U-238 and Pu-241 seems to preclude the possibility of using laser ablation ICP-MS for Pu monitoring. ICP-AES and -LEAFS methods may not have enough sensitivity to determine Pu-238 at 2 ppb level with confidence, but RIMS (resonance ionization mass spectroscopy) should be adequate. 47 refs, figs.

  1. PHOTOACTIVATED LUMINESCENCE METHOD FOR RAPID SCREENING OF POLYCHLORINATED BIPHENYLS

    EPA Science Inventory

    The U.S. Department of Energy and the U.S. Environmental Protection Agency have a strong need for screening capabilities for hazardous materials. his paper describes a new method based on enhanced photoactivated luminescence (ELP) for rapid detection of PCBs. he EPL method descri...

  2. Radiometric Characterization of IKONOS Multispectral Imagery

    NASA Technical Reports Server (NTRS)

    Pagnutti, Mary; Ryan, Robert E.; Kelly, Michelle; Holekamp, Kara; Zanoni, Vicki; Thome, Kurtis; Schiller, Stephen

    2002-01-01

    A radiometric characterization of Space Imaging's IKONOS 4-m multispectral imagery has been performed by a NASA funded team from the John C. Stennis Space Center (SSC), the University of Arizona Remote Sensing Group (UARSG), and South Dakota State University (SDSU). Both intrinsic radiometry and the effects of Space Imaging processing on radiometry were investigated. Relative radiometry was examined with uniform Antarctic and Saharan sites. Absolute radiometric calibration was performed using reflectance-based vicarious calibration methods on several uniform sites imaged by IKONOS, coincident with ground-based surface and atmospheric measurements. Ground-based data and the IKONOS spectral response function served as input to radiative transfer codes to generate a Top-of-Atmosphere radiance estimate. Calibration coefficients derived from each vicarious calibration were combined to generate an IKONOS radiometric gain coefficient for each multispectral band assuming a linear response over the full dynamic range of the instrument. These calibration coefficients were made available to Space Imaging, which subsequently adopted them by updating its initial set of calibration coefficients. IKONOS imagery procured through the NASA Scientific Data Purchase program is processed with or without a Modulation Transfer Function Compensation kernel. The radiometric effects of this kernel on various scene types was also investigated. All imagery characterized was procured through the NASA Scientific Data Purchase program.

  3. [Laser-based radiometric calibration].

    PubMed

    Li, Zhi-gang; Zheng, Yu-quan

    2014-12-01

    Increasingly higher demands are put forward to spectral radiometric calibration accuracy and the development of new tunable laser based spectral radiometric calibration technology is promoted, along with the development of studies of terrestrial remote sensing, aeronautical and astronautical remote sensing, plasma physics, quantitative spectroscopy, etc. Internationally a number of national metrology scientific research institutes have built tunable laser based spectral radiometric calibration facilities in succession, which are traceable to cryogenic radiometers and have low uncertainties for spectral responsivity calibration and characterization of detectors and remote sensing instruments in the UK, the USA, Germany, etc. Among them, the facility for spectral irradiance and radiance responsivity calibrations using uniform sources (SIRCCUS) at the National Institute of Standards and Technology (NIST) in the USA and the Tunable Lasers in Photometry (TULIP) facility at the Physikalisch-Technische Bundesanstalt (PTB) in Germany have more representatives. Compared with lamp-monochromator systems, laser based spectral radiometric calibrations have many advantages, such as narrow spectral bandwidth, high wavelength accuracy, low calibration uncertainty and so on for radiometric calibration applications. In this paper, the development of laser-based spectral radiometric calibration and structures and performances of laser-based radiometric calibration facilities represented by the National Physical Laboratory (NPL) in the UK, NIST and PTB are presented, technical advantages of laser-based spectral radiometric calibration are analyzed, and applications of this technology are further discussed. Laser-based spectral radiometric calibration facilities can be widely used in important system-level radiometric calibration measurements with high accuracy, including radiance temperature, radiance and irradiance calibrations for space remote sensing instruments, and promote the

  4. Methods and systems for rapid prototyping of high density circuits

    DOEpatents

    Palmer, Jeremy A.; Davis, Donald W.; Chavez, Bart D.; Gallegos, Phillip L.; Wicker, Ryan B.; Medina, Francisco R.

    2008-09-02

    A preferred embodiment provides, for example, a system and method of integrating fluid media dispensing technology such as direct-write (DW) technologies with rapid prototyping (RP) technologies such as stereolithography (SL) to provide increased micro-fabrication and micro-stereolithography. A preferred embodiment of the present invention also provides, for example, a system and method for Rapid Prototyping High Density Circuit (RPHDC) manufacturing of solderless connectors and pilot devices with terminal geometries that are compatible with DW mechanisms and reduce contact resistance where the electrical system is encapsulated within structural members and manual electrical connections are eliminated in favor of automated DW traces. A preferred embodiment further provides, for example, a method of rapid prototyping comprising: fabricating a part layer using stereolithography and depositing thermally curable media onto the part layer using a fluid dispensing apparatus.

  5. A new, rapid, method for preparation of dispersed pancreatic acini.

    PubMed Central

    Bruzzone, R; Halban, P A; Gjinovci, A; Trimble, E R

    1985-01-01

    A new method for the preparation of pancreatic acini is described. The method is simple and much more rapid than previously described techniques, the time required for preparation of pancreatic acini being 20 min from removal of the pancreas. Acini prepared with this method perform in a superior manner when stimulated by either caerulein or secretin. Thus this new technique would be ideal for use in binding and secretion studies. PMID:2581556

  6. Use of a novel radiometric method to assess the inhibitory effect of donepezil on acetylcholinesterase activity in minimally diluted tissue samples

    PubMed Central

    Kikuchi, Tatsuya; Okamura, Toshimitsu; Arai, Takuya; Obata, Takayuki; Fukushi, Kiyoshi; Irie, Toshiaki; Shiraishi, Tetsuya

    2010-01-01

    Background and purpose: Cholinesterase inhibitors have been widely used for the treatment of patients with dementia. Monitoring of the cholinesterase activity in the blood is used as an indicator of the effect of the cholinesterase inhibitors in the brain. The selective measurement of cholinesterase with low tissue dilution is preferred for accurate monitoring; however, the methods have not been established. Here, we investigated the effect of tissue dilution on the action of cholinesterase inhibitors using a novel radiometric method with selective substrates, N-[14C]methylpiperidin-4-yl acetate ([14C]MP4A) and (R)-N-[14C]methylpiperidin-3-yl butyrate ([14C]MP3B_R), for AChE and butyrylcholinesterase (BChE) respectively. Experimental approach: We investigated the kinetics of hydrolysis of [14C]-MP4A and [14C]-MP3B_R by cholinesterases, and evaluated the selectivity of [14C]MP4A and [14C]MP3B_R for human AChE and BChE, respectively, compared with traditional substrates. Then, IC50 values of cholinesterase inhibitors in minimally diluted and highly diluted tissues were measured with [14C]MP4A and [14C]MP3B_R. Key results: AChE and BChE activities were selectively measured as the first-order hydrolysis rates of [14C]-MP4A and [14C]MP3B_R respectively. The AChE selectivity of [14C]MP4A was an order of magnitude higher than traditional substrates used for the AChE assay. The IC50 values of specific AChE and BChE inhibitors, donepezil and ethopropazine, in 1.2-fold diluted human whole blood were much higher than those in 120-fold diluted blood. In addition, the IC50 values of donepezil in monkey brain were dramatically decreased as the tissue was diluted. Conclusions and implications: This method would effectively monitor the activity of cholinesterase inhibitors used for therapeutics, pesticides and chemical warfare agents. PMID:20401964

  7. Non-invasive hyperthermia apparatus including coaxial applicator having a non-invasive radiometric receiving antenna incorporated therein and method of use thereof

    DOEpatents

    Ross, Michael P.

    1996-01-01

    A coaxial hyperthermia applicator for applying non-invasively electromagnetic energy to a body against which it is placed. The coaxial applicator antenna has formed integrally within it a non-invasive radiometric antenna for receiving thermoelectromagnetic emissions. The coaxial-configured applicator produces a bell-shaped radiation pattern symmetric about the axis of symmetry of the coaxial applicator. Integrating the radiometric antenna within the coaxial applicator produces a single device that performs dual functions. The first function is to transmit non-invasively energy for heating a subcutaneous tumor. The second function is to receive non-invasively thermal electromagnetic radiation from the tumor by which temperature is sensed and fed back to control the output of the coaxial applicator.

  8. Non-invasive hyperthermia apparatus including coaxial applicator having a non-invasive radiometric receiving antenna incorporated therein and method of use thereof

    DOEpatents

    Ross, M.P.

    1996-08-27

    A coaxial hyperthermia applicator is disclosed for applying non-invasively electromagnetic energy to a body against which it is placed. The coaxial applicator antenna has formed integrally within it a non-invasive radiometric antenna for receiving thermoelectromagnetic emissions. The coaxial-configured applicator produces a bell-shaped radiation pattern symmetric about the axis of symmetry of the coaxial applicator. Integrating the radiometric antenna within the coaxial applicator produces a single device that performs dual functions. The first function is to transmit non-invasively energy for heating a subcutaneous tumor. The second function is to receive non-invasively thermal electromagnetic radiation from the tumor by which temperature is sensed and fed back to control the output of the coaxial applicator. 11 figs.

  9. Radiometric detection of yeasts in blood cultures of cancer patients

    SciTech Connect

    Hopfer, R.L.; Orengo, A.; Chesnut, S.; Wenglar, M.

    1980-09-01

    During a 12-month period, 19,457 blood cultures were collected. Yeasts were isolated from 193 cultures derived from 76 cancer patients. Candida albicans or Candida tropicalis accounted for 79% of isolates. Of the three methods compared, the radiometric method required 2.9 days to become positive, blind subculture required 2.6 days, and Gram stains required 1 day. However, the radiometric method was clearly superior in detecting positive cultures, since 73% of all cultures were first detected radiometrically, 22% were detected by subculture, and only 5% were detected by Gram stain. Although 93% of the isolates were detected by aerobic culture, five (7%) isolates were obtained only from anaerobic cultures. Seven days of incubation appear to be sufficient for the radiometric detection of yeasts.

  10. Rapid diagnosis of mumps virus infections by immunofluorescence methods.

    PubMed

    Lennette, D A; Emmons, R W; Lennette, E H

    1976-08-01

    Mumps and its complications, particularly meningoencephalitis, is an important disease problem, and more rapid diagnostic methods are desirable. A study was made of immunofluorescence methods for the early detection of mumps virus isolated in cell cultures, or adsorbed directly from clinical specimens onto guinea pig erythrocytes. A specific diagnosis could be made in hours to 2 or 3 days utilizing immunofluorescence methods, in contrast to about 6 days by standard methods. Details of the direct immunofluorescence methods are presented, to encourage wider application in clinical virology laboratories. PMID:787002

  11. RAPID SEPARATION METHOD FOR ACTINIDES IN EMERGENCY SOIL SAMPLES

    SciTech Connect

    Maxwell, S.; Culligan, B.; Noyes, G.

    2009-11-09

    A new rapid method for the determination of actinides in soil and sediment samples has been developed at the Savannah River Site Environmental Lab (Aiken, SC, USA) that can be used for samples up to 2 grams in emergency response situations. The actinides in soil method utilizes a rapid sodium hydroxide fusion method, a lanthanum fluoride soil matrix removal step, and a streamlined column separation process with stacked TEVA, TRU and DGA Resin cartridges. Lanthanum was separated rapidly and effectively from Am and Cm on DGA Resin. Vacuum box technology and rapid flow rates are used to reduce analytical time. Alpha sources are prepared using cerium fluoride microprecipitation for counting by alpha spectrometry. The method showed high chemical recoveries and effective removal of interferences. This new procedure was applied to emergency soil samples received in the NRIP Emergency Response exercise administered by the National Institute for Standards and Technology (NIST) in April, 2009. The actinides in soil results were reported within 4-5 hours with excellent quality.

  12. Rapid Method for Measuring Extracellular Water in Yeast Preparations

    PubMed Central

    Watson, R. W.; Levinson, M. L.

    1967-01-01

    A rapid procedure for the quantitative determination of extracellular water in bulk bakers' yeast was developed on the basis of the solute dilution principle. A reagent is prepared by synthesizing the diazonium ion of p-aminobenzoic acid and coupling it to peptone. This “azopeptone reagent” permits direct colorimetric measurement, which accounts for the rapidity and simplicity of the test. Potential errors due to osmotic effects are avoided by supplementing the reagent with saline and, more importantly, minimizing the duration of contact between reagent and cells. The new method has acceptable accuracy and precision, and may also be suitable for use with other microorganisms. PMID:6043615

  13. Development of a rapid assimilable organic carbon method for water.

    PubMed

    Lechevallier, M W; Shaw, N E; Kaplan, L A; Bott, T L

    1993-05-01

    A rapid method for measurement of assimilable organic carbon (AOC) is proposed. The time needed to perform the assay is reduced by increasing the incubation temperature and increasing the inoculum density. The ATP luciferin-luciferase method quickly enumerates the test organisms without the need for plate count media or dilution bottles. There was no significant difference between AOC values determined with strain P17 for the ATP and plate count procedures. For strain NOX, the plate count procedure underestimated bacterial levels in some samples. Comparison of AOC values obtained by the Belleville laboratory (by the ATP technique) and the Stroud Water Research Center (by plate counts) showed that values were significantly correlated and not significantly different. The study concludes that the rapid AOC method can quickly determine the bacterial growth potential of water within 2 to 4 days. PMID:16348936

  14. Evaluation of a rapid method of determination of plasma fibrinogen.

    PubMed

    Thomson, G W; McSherry, B J; Valli, V E

    1974-07-01

    An evaluation was made of a rapid semiautomated method of determining fibrinogen levels in bovine plasma. This method, the fibrometer method of Morse, Panek and Menga (8), is based on the principle that when thrombin is added to suitably diluted plasma the time of clotting is linearly related to the fibrinogen concentration. A standard curve prepared using bovine plasma had an r value of .9987 and analysis of variance showed there was no significant deviation from regression. A comparison of the fibrometer method and the biuret method of Ware, Guest and Seegers done on 158 bovine plasma samples showed good correlation between the two methods. It was concluded that the fibrometer method does measure bovine fibrinogen and has considerable merit for use in clinical diseases of cattle. PMID:4277474

  15. RAPID SEPARATION METHOD FOR ACTINIDES IN EMERGENCY AIR FILTER SAMPLES

    SciTech Connect

    Maxwell, S.; Noyes, G.; Culligan, B.

    2010-02-03

    A new rapid method for the determination of actinides and strontium in air filter samples has been developed at the Savannah River Site Environmental Lab (Aiken, SC, USA) that can be used in emergency response situations. The actinides and strontium in air filter method utilizes a rapid acid digestion method and a streamlined column separation process with stacked TEVA, TRU and Sr Resin cartridges. Vacuum box technology and rapid flow rates are used to reduce analytical time. Alpha emitters are prepared using cerium fluoride microprecipitation for counting by alpha spectrometry. The purified {sup 90}Sr fractions are mounted directly on planchets and counted by gas flow proportional counting. The method showed high chemical recoveries and effective removal of interferences. This new procedure was applied to emergency air filter samples received in the NRIP Emergency Response exercise administered by the National Institute for Standards and Technology (NIST) in April, 2009. The actinide and {sup 90}Sr in air filter results were reported in {approx}4 hours with excellent quality.

  16. Climate Change and Sounder Radiometric Stability

    NASA Technical Reports Server (NTRS)

    Pagano, Thomas S.; Aumann, Hartmut H.; Manning, Evan

    2009-01-01

    Satellite instrument radiometric stability is critical for climate studies. The Atmospheric Infrared Sounder (AIRS) radiances are of sufficient stability and accuracy to serve as a climate data record as evidenced by comparisons with the global network of buoys. In this paper we examine the sensitivity of derived geophysical products to potential instrument radiometric stability issues due to diurnal, orbital and seasonal variations. Our method is to perturb the AIRS radiances and examine the impact to retrieved parameters. Results show that instability in retrieved temperature products will be on the same order of the brightness temperature error in the radiances and follow the same time dependences. AIRS excellent stability makes it ideal for examining impacts of instabilities of future systems on geophysical parameter performance.

  17. Preparing Silica Aerogel Monoliths via a Rapid Supercritical Extraction Method

    PubMed Central

    Gorka, Caroline A.

    2014-01-01

    A procedure for the fabrication of monolithic silica aerogels in eight hours or less via a rapid supercritical extraction process is described. The procedure requires 15-20 min of preparation time, during which a liquid precursor mixture is prepared and poured into wells of a metal mold that is placed between the platens of a hydraulic hot press, followed by several hours of processing within the hot press. The precursor solution consists of a 1.0:12.0:3.6:3.5 x 10-3 molar ratio of tetramethylorthosilicate (TMOS):methanol:water:ammonia. In each well of the mold, a porous silica sol-gel matrix forms. As the temperature of the mold and its contents is increased, the pressure within the mold rises. After the temperature/pressure conditions surpass the supercritical point for the solvent within the pores of the matrix (in this case, a methanol/water mixture), the supercritical fluid is released, and monolithic aerogel remains within the wells of the mold. With the mold used in this procedure, cylindrical monoliths of 2.2 cm diameter and 1.9 cm height are produced. Aerogels formed by this rapid method have comparable properties (low bulk and skeletal density, high surface area, mesoporous morphology) to those prepared by other methods that involve either additional reaction steps or solvent extractions (lengthier processes that generate more chemical waste).The rapid supercritical extraction method can also be applied to the fabrication of aerogels based on other precursor recipes. PMID:24637334

  18. Preparing silica aerogel monoliths via a rapid supercritical extraction method.

    PubMed

    Carroll, Mary K; Anderson, Ann M; Gorka, Caroline A

    2014-01-01

    A procedure for the fabrication of monolithic silica aerogels in eight hours or less via a rapid supercritical extraction process is described. The procedure requires 15-20 min of preparation time, during which a liquid precursor mixture is prepared and poured into wells of a metal mold that is placed between the platens of a hydraulic hot press, followed by several hours of processing within the hot press. The precursor solution consists of a 1.0:12.0:3.6:3.5 x 10(-3) molar ratio of tetramethylorthosilicate (TMOS):methanol:water:ammonia. In each well of the mold, a porous silica sol-gel matrix forms. As the temperature of the mold and its contents is increased, the pressure within the mold rises. After the temperature/pressure conditions surpass the supercritical point for the solvent within the pores of the matrix (in this case, a methanol/water mixture), the supercritical fluid is released, and monolithic aerogel remains within the wells of the mold. With the mold used in this procedure, cylindrical monoliths of 2.2 cm diameter and 1.9 cm height are produced. Aerogels formed by this rapid method have comparable properties (low bulk and skeletal density, high surface area, mesoporous morphology) to those prepared by other methods that involve either additional reaction steps or solvent extractions (lengthier processes that generate more chemical waste).The rapid supercritical extraction method can also be applied to the fabrication of aerogels based on other precursor recipes. PMID:24637334

  19. Uncooled radiometric camera performance

    NASA Astrophysics Data System (ADS)

    Meyer, Bill; Hoelter, T.

    1998-07-01

    Thermal imaging equipment utilizing microbolometer detectors operating at room temperature has found widespread acceptance in both military and commercial applications. Uncooled camera products are becoming effective solutions to applications currently using traditional, photonic infrared sensors. The reduced power consumption and decreased mechanical complexity offered by uncooled cameras have realized highly reliable, low-cost, hand-held instruments. Initially these instruments displayed only relative temperature differences which limited their usefulness in applications such as Thermography. Radiometrically calibrated microbolometer instruments are now available. The ExplorIR Thermography camera leverages the technology developed for Raytheon Systems Company's first production microbolometer imaging camera, the Sentinel. The ExplorIR camera has a demonstrated temperature measurement accuracy of 4 degrees Celsius or 4% of the measured value (whichever is greater) over scene temperatures ranges of minus 20 degrees Celsius to 300 degrees Celsius (minus 20 degrees Celsius to 900 degrees Celsius for extended range models) and camera environmental temperatures of minus 10 degrees Celsius to 40 degrees Celsius. Direct temperature measurement with high resolution video imaging creates some unique challenges when using uncooled detectors. A temperature controlled, field-of-view limiting aperture (cold shield) is not typically included in the small volume dewars used for uncooled detector packages. The lack of a field-of-view shield allows a significant amount of extraneous radiation from the dewar walls and lens body to affect the sensor operation. In addition, the transmission of the Germanium lens elements is a function of ambient temperature. The ExplorIR camera design compensates for these environmental effects while maintaining the accuracy and dynamic range required by today's predictive maintenance and condition monitoring markets.

  20. Rapid enzymatic method for pectin methyl esters determination.

    PubMed

    Lękawska-Andrinopoulou, Lucyna; Vasiliou, Efstathios G; Georgakopoulos, Dimitrios G; Yialouris, Constantinos P; Georgiou, Constantinos A

    2013-01-01

    Pectin is a natural polysaccharide used in food and pharma industries. Pectin degree of methylation is an important parameter having significant influence on pectin applications. A rapid, fully automated, kinetic flow method for determination of pectin methyl esters has been developed. The method is based on a lab-made analyzer using the reverse flow-injection/stopped flow principle. Methanol is released from pectin by pectin methylesterase in the first mixing coil. Enzyme working solution is injected further downstream and it is mixed with pectin/pectin methylesterase stream in the second mixing coil. Methanol is oxidized by alcohol oxidase releasing formaldehyde and hydrogen peroxide. This reaction is coupled to horse radish peroxidase catalyzed reaction, which gives the colored product 4-N-(p-benzoquinoneimine)-antipyrine. Reaction rate is proportional to methanol concentration and it is followed using Ocean Optics USB 2000+ spectrophotometer. The analyzer is fully regulated by a lab written LabVIEW program. The detection limit was 1.47 mM with an analysis rate of 7 samples h(-1). A paired t-test with results from manual method showed that the automated method results are equivalent to the manual method at the 95% confidence interval. The developed method is rapid and sustainable and it is the first application of flow analysis in pectin analysis. PMID:24455426

  1. Rapid Enzymatic Method for Pectin Methyl Esters Determination

    PubMed Central

    Łękawska-Andrinopoulou, Lucyna; Vasiliou, Efstathios G.; Georgakopoulos, Dimitrios G.; Yialouris, Constantinos P.; Georgiou, Constantinos A.

    2013-01-01

    Pectin is a natural polysaccharide used in food and pharma industries. Pectin degree of methylation is an important parameter having significant influence on pectin applications. A rapid, fully automated, kinetic flow method for determination of pectin methyl esters has been developed. The method is based on a lab-made analyzer using the reverse flow-injection/stopped flow principle. Methanol is released from pectin by pectin methylesterase in the first mixing coil. Enzyme working solution is injected further downstream and it is mixed with pectin/pectin methylesterase stream in the second mixing coil. Methanol is oxidized by alcohol oxidase releasing formaldehyde and hydrogen peroxide. This reaction is coupled to horse radish peroxidase catalyzed reaction, which gives the colored product 4-N-(p-benzoquinoneimine)-antipyrine. Reaction rate is proportional to methanol concentration and it is followed using Ocean Optics USB 2000+ spectrophotometer. The analyzer is fully regulated by a lab written LabVIEW program. The detection limit was 1.47 mM with an analysis rate of 7 samples h−1. A paired t-test with results from manual method showed that the automated method results are equivalent to the manual method at the 95% confidence interval. The developed method is rapid and sustainable and it is the first application of flow analysis in pectin analysis. PMID:24455426

  2. Rapid quantification method for Legionella pneumophila in surface water.

    PubMed

    Wunderlich, Anika; Torggler, Carmen; Elsässer, Dennis; Lück, Christian; Niessner, Reinhard; Seidel, Michael

    2016-03-01

    World-wide legionellosis outbreaks caused by evaporative cooling systems have shown that there is a need for rapid screening methods for Legionella pneumophila in water. Antibody-based methods for the quantification of L. pneumophila are rapid, non-laborious, and relatively cheap but not sensitive enough for establishment as a screening method for surface and drinking water. Therefore, preconcentration methods have to be applied in advance to reach the needed sensitivity. In a basic test, monolithic adsorption filtration (MAF) was used as primary preconcentration method that adsorbs L. pneumophila with high efficiency. Ten-liter water samples were concentrated in 10 min and further reduced to 1 mL by centrifugal ultrafiltration (CeUF). The quantification of L. pneumophila strains belonging to the monoclonal subtype Bellingham was performed via flow-based chemiluminescence sandwich microarray immunoassays (CL-SMIA) in 36 min. The whole analysis process takes 90 min. A polyclonal antibody (pAb) against L. pneumophila serogroup 1-12 and a monoclonal antibody (mAb) against L. pneumophila SG 1 strain Bellingham were immobilized on a microarray chip. Without preconcentration, the detection limit was 4.0 × 10(3) and 2.8 × 10(3) CFU/mL determined by pAb and mAb 10/6, respectively. For samples processed by MAF-CeUF prior to SMIA detection, the limit of detection (LOD) could be decreased to 8.7 CFU/mL and 0.39 CFU/mL, respectively. A recovery of 99.8 ± 15.9% was achieved for concentrations between 1-1000 CFU/mL. The established combined analytical method is sensitive for rapid screening of surface and drinking water to allow fast hygiene control of L. pneumophila. PMID:26873217

  3. Method for rapidly producing microporous and mesoporous materials

    DOEpatents

    Coronado, P.R.; Poco, J.F.; Hrubesh, L.W.; Hopper, R.W.

    1997-11-11

    An improved, rapid process is provided for making microporous and mesoporous materials, including aerogels and pre-ceramics. A gel or gel precursor is confined in a sealed vessel to prevent structural expansion of the gel during the heating process. This confinement allows the gelation and drying processes to be greatly accelerated, and significantly reduces the time required to produce a dried aerogel compared to conventional methods. Drying may be performed either by subcritical drying with a pressurized fluid to expel the liquid from the gel pores or by supercritical drying. The rates of heating and decompression are significantly higher than for conventional methods. 3 figs.

  4. Method for rapidly producing microporous and mesoporous materials

    DOEpatents

    Coronado, Paul R.; Poco, John F.; Hrubesh, Lawrence W.; Hopper, Robert W.

    1997-01-01

    An improved, rapid process is provided for making microporous and mesoporous materials, including aerogels and pre-ceramics. A gel or gel precursor is confined in a sealed vessel to prevent structural expansion of the gel during the heating process. This confinement allows the gelation and drying processes to be greatly accelerated, and significantly reduces the time required to produce a dried aerogel compared to conventional methods. Drying may be performed either by subcritical drying with a pressurized fluid to expel the liquid from the gel pores or by supercritical drying. The rates of heating and decompression are significantly higher than for conventional methods.

  5. Rapid surface enhanced Raman scattering detection method for chloramphenicol residues.

    PubMed

    Ji, Wei; Yao, Weirong

    2015-06-01

    Chloramphenicol (CAP) is a widely used amide alcohol antibiotics, which has been banned from using in food producing animals in many countries. In this study, surface enhanced Raman scattering (SERS) coupled with gold colloidal nanoparticles was used for the rapid analysis of CAP. Density functional theory (DFT) calculations were conducted with Gaussian 03 at the B3LYP level using the 3-21G(d) and 6-31G(d) basis sets to analyze the assignment of vibrations. Affirmatively, the theoretical Raman spectrum of CAP was in complete agreement with the experimental spectrum. They both exhibited three strong peaks characteristic of CAP at 1104 cm(-1), 1344 cm(-1), 1596 cm(-1), which were used for rapid qualitative analysis of CAP residues in food samples. The use of SERS as a method for the measurements of CAP was explored by comparing use of different solvents, gold colloidal nanoparticles concentration and absorption time. The method of the detection limit was determined as 0.1 μg/mL using optimum conditions. The Raman peak at 1344 cm(-1) was used as the index for quantitative analysis of CAP in food samples, with a linear correlation of R(2)=0.9802. Quantitative analysis of CAP residues in foods revealed that the SERS technique with gold colloidal nanoparticles was sensitive and of a good stability and linear correlation, and suited for rapid analysis of CAP residue in a variety of food samples. PMID:25754387

  6. Rapid surface enhanced Raman scattering detection method for chloramphenicol residues

    NASA Astrophysics Data System (ADS)

    Ji, Wei; Yao, Weirong

    2015-06-01

    Chloramphenicol (CAP) is a widely used amide alcohol antibiotics, which has been banned from using in food producing animals in many countries. In this study, surface enhanced Raman scattering (SERS) coupled with gold colloidal nanoparticles was used for the rapid analysis of CAP. Density functional theory (DFT) calculations were conducted with Gaussian 03 at the B3LYP level using the 3-21G(d) and 6-31G(d) basis sets to analyze the assignment of vibrations. Affirmatively, the theoretical Raman spectrum of CAP was in complete agreement with the experimental spectrum. They both exhibited three strong peaks characteristic of CAP at 1104 cm-1, 1344 cm-1, 1596 cm-1, which were used for rapid qualitative analysis of CAP residues in food samples. The use of SERS as a method for the measurements of CAP was explored by comparing use of different solvents, gold colloidal nanoparticles concentration and absorption time. The method of the detection limit was determined as 0.1 μg/mL using optimum conditions. The Raman peak at 1344 cm-1 was used as the index for quantitative analysis of CAP in food samples, with a linear correlation of R2 = 0.9802. Quantitative analysis of CAP residues in foods revealed that the SERS technique with gold colloidal nanoparticles was sensitive and of a good stability and linear correlation, and suited for rapid analysis of CAP residue in a variety of food samples.

  7. SIMS: A Hybrid Method for Rapid Conformational Analysis

    PubMed Central

    Gipson, Bryant; Moll, Mark; Kavraki, Lydia E.

    2013-01-01

    Proteins are at the root of many biological functions, often performing complex tasks as the result of large changes in their structure. Describing the exact details of these conformational changes, however, remains a central challenge for computational biology due the enormous computational requirements of the problem. This has engendered the development of a rich variety of useful methods designed to answer specific questions at different levels of spatial, temporal, and energetic resolution. These methods fall largely into two classes: physically accurate, but computationally demanding methods and fast, approximate methods. We introduce here a new hybrid modeling tool, the Structured Intuitive Move Selector (sims), designed to bridge the divide between these two classes, while allowing the benefits of both to be seamlessly integrated into a single framework. This is achieved by applying a modern motion planning algorithm, borrowed from the field of robotics, in tandem with a well-established protein modeling library. sims can combine precise energy calculations with approximate or specialized conformational sampling routines to produce rapid, yet accurate, analysis of the large-scale conformational variability of protein systems. Several key advancements are shown, including the abstract use of generically defined moves (conformational sampling methods) and an expansive probabilistic conformational exploration. We present three example problems that sims is applied to and demonstrate a rapid solution for each. These include the automatic determination of “active” residues for the hinge-based system Cyanovirin-N, exploring conformational changes involving long-range coordinated motion between non-sequential residues in Ribose-Binding Protein, and the rapid discovery of a transient conformational state of Maltose-Binding Protein, previously only determined by Molecular Dynamics. For all cases we provide energetic validations using well-established energy

  8. A novel method for rapid in vitro radiobioassay

    NASA Astrophysics Data System (ADS)

    Crawford, Evan Bogert

    Rapid and accurate analysis of internal human exposure to radionuclides is essential to the effective triage and treatment of citizens who have possibly been exposed to radioactive materials in the environment. The two most likely scenarios in which a large number of citizens would be exposed are the detonation of a radiation dispersal device (RDD, "dirty bomb") or the accidental release of an isotope from an industrial source such as a radioisotopic thermal generator (RTG). In the event of the release and dispersion of radioactive materials into the environment in a large city, the entire population of the city -- including all commuting workers and tourists -- would have to be rapidly tested, both to satisfy the psychological needs of the citizens who were exposed to the mental trauma of a possible radiation dose, and to satisfy the immediate medical needs of those who received the highest doses and greatest levels of internal contamination -- those who would best benefit from rapid, intensive medical care. In this research a prototype rapid screening method to screen urine samples for the presence of up to five isotopes, both individually and in a mixture, has been developed. The isotopes used to develop this method are Co-60, Sr-90, Cs-137, Pu-238, and Am-241. This method avoids time-intensive chemical separations via the preparation and counting of a single sample on multiple detectors, and analyzing the spectra for isotope-specific markers. A rapid liquid-liquid separation using an organic extractive scintillator can be used to help quantify the activity of the alpha-emitting isotopes. The method provides quantifiable results in less than five minutes for the activity of beta/gamma-emitting isotopes when present in the sample at the intervention level as defined by the Centers for Disease Control and Prevention (CDC), and quantifiable results for the activity levels of alpha-emitting isotopes present at their respective intervention levels in approximately 30

  9. New Rapid Method of DNA Isolation from Milk Somatic Cells

    PubMed Central

    Pokorska, Joanna; Kułaj, Dominika; Dusza, Magdalena; Żychlińska-Buczek, Justyna; Makulska, Joanna

    2016-01-01

    ABSTRACT Isolation of genomic DNA is one of the basic steps in many different molecular analyses. There are a few reports on methods of DNA isolation from milk, but many of them are time consuming and expensive, and require relatively large volumes of raw milk. In this study a rapid, sensitive, and efficient method of DNA extraction from milk somatic cells of various mammals (cattle, sheep, goats, horses) is presented. It was found that milk is a good source of genomic DNA, and to obtain a sufficient amount and quality of DNA, suitable for molecular analysis such as PCR, 10 mL of raw milk is sufficient. Thanks to this method, stress in animals can be reduced during collection of researched material. Therefore, this method could be widely used in molecular analyses. PMID:26913552

  10. New Rapid Method of DNA Isolation from Milk Somatic Cells.

    PubMed

    Pokorska, Joanna; Kułaj, Dominika; Dusza, Magdalena; Żychlińska-Buczek, Justyna; Makulska, Joanna

    2016-04-01

    Isolation of genomic DNA is one of the basic steps in many different molecular analyses. There are a few reports on methods of DNA isolation from milk, but many of them are time consuming and expensive, and require relatively large volumes of raw milk. In this study a rapid, sensitive, and efficient method of DNA extraction from milk somatic cells of various mammals (cattle, sheep, goats, horses) is presented. It was found that milk is a good source of genomic DNA, and to obtain a sufficient amount and quality of DNA, suitable for molecular analysis such as PCR, 10 mL of raw milk is sufficient. Thanks to this method, stress in animals can be reduced during collection of researched material. Therefore, this method could be widely used in molecular analyses. PMID:26913552

  11. Rapid Methods for High-Throughput Detection of Sulfoxides▿

    PubMed Central

    Shainsky, Janna; Derry, Netta-Lee; Leichtmann-Bardoogo, Yael; Wood, Thomas K.; Fishman, Ayelet

    2009-01-01

    Enantiopure sulfoxides are prevalent in drugs and are useful chiral auxiliaries in organic synthesis. The biocatalytic enantioselective oxidation of prochiral sulfides is a direct and economical approach for the synthesis of optically pure sulfoxides. The selection of suitable biocatalysts requires rapid and reliable high-throughput screening methods. Here we present four different methods for detecting sulfoxides produced via whole-cell biocatalysis, three of which were exploited for high-throughput screening. Fluorescence detection based on the acid activation of omeprazole was utilized for high-throughput screening of mutant libraries of toluene monooxygenases, but no active variants have been discovered yet. The second method is based on the reduction of sulfoxides to sulfides, with the coupled release and measurement of iodine. The availability of solvent-resistant microtiter plates enabled us to modify the method to a high-throughput format. The third method, selective inhibition of horse liver alcohol dehydrogenase, was used to rapidly screen highly active and/or enantioselective variants at position V106 of toluene ortho-monooxygenase in a saturation mutagenesis library, using methyl-p-tolyl sulfide as the substrate. A success rate of 89% (i.e., 11% false positives) was obtained, and two new mutants were selected. The fourth method is based on the colorimetric detection of adrenochrome, a back-titration procedure which measures the concentration of the periodate-sensitive sulfide. Due to low sensitivity during whole-cell screening, this method was found to be useful only for determining the presence or absence of sulfoxide in the reaction. The methods described in the present work are simple and inexpensive and do not require special equipment. PMID:19465532

  12. Lessons Learned from the AIRS Pre-Flight Radiometric Calibration

    NASA Technical Reports Server (NTRS)

    Pagano, Thomas S.; Aumann, Hartmut H.; Weiler, Margie

    2013-01-01

    The Atmospheric Infrared Sounder (AIRS) instrument flies on the NASA Aqua satellite and measures the upwelling hyperspectral earth radiance in the spectral range of 3.7-15.4 micron with a nominal ground resolution at nadir of 13.5 km. The AIRS spectra are achieved using a temperature controlled grating spectrometer and HgCdTe infrared linear arrays providing 2378 channels with a nominal spectral resolution of approximately 1200. The AIRS pre-flight tests that impact the radiometric calibration include a full system radiometric response (linearity), polarization response, and response vs scan angle (RVS). We re-derive the AIRS instrument radiometric calibration coefficients from the pre-flight polarization measurements, the response vs scan (RVS) angle tests as well as the linearity tests, and a recent lunar roll test that allowed the AIRS to view the moon. The data and method for deriving the coefficients is discussed in detail and the resulting values compared amongst the different tests. Finally, we examine the residual errors in the reconstruction of the external calibrator blackbody radiances and the efficacy of a new radiometric uncertainty model. Results show the radiometric calibration of AIRS to be excellent and the radiometric uncertainty model does a reasonable job of characterizing the errors.

  13. Rapid method for the quantification of hydroquinone concentration: chemiluminescent analysis.

    PubMed

    Chen, Tung-Sheng; Liou, Show-Yih; Kuo, Wei-Wen; Wu, Hsi-Chin; Jong, Gwo-Ping; Wang, Hsueh-Fang; Shen, Chia-Yao; Padma, V Vijaya; Huang, Chih-Yang; Chang, Yen-Lin

    2015-11-01

    Topical hydroquinone serves as a skin whitener and is usually available in cosmetics or on prescription based on the hydroquinone concentration. Quantification of hydroquinone content therefore becomes an important issue in topical agents. High-performance liquid chromatography (HPLC) is the commonest method for determining hydroquinone content in topical agents, but this method is time-consuming and uses many solvents that can become an environmental issue. We report a rapid method for quantifying hydroquinone content by chemiluminescent analysis. Hydroquinone induces the production of hydrogen peroxide in the presence of basic compounds. Hydrogen peroxide induced by hydroquinone oxidized light-emitting materials such as lucigenin, resulted in the production of ultra-weak chemiluminescence that was detected by a chemiluminescence analyzer. The intensity of the chemiluminescence was found to be proportional to the hydroquinone concentration. We suggest that the rapid (measurement time, 60 s) and virtually solvent-free (solvent volume, <2 mL) chemiluminescent method described here for quantifying hydroquinone content may be an alternative to HPLC analysis. PMID:25693839

  14. Rapid screening methods for beta-emitters in food samples.

    PubMed

    Vos van Avezathe, A; Brandhoff, P N; van Bourgondiën, M J; Krijger, G C

    2015-03-01

    In case of a nuclear emergency, many samples need to be measured in a short time period. Therefore, it is of vital importance to have a quick and reliable (screening)method. Most methods to determine total beta activity are time-consuming because of extensive sample preparation, such as ashing. In this article three different rapid screening methods for beta emitting nuclides in agriculture, livestock and fishery products were tested and compared to each other, and to an accurate but more time consuming reference method. The goal was to find the method with the optimal trade-off between accuracy, speed and minimal detectable activity (MDA). All of the methods rely on liquid scintillation counting (LSC) or Cerenkov counting, and differ mainly in sample preparation. For matrices with little or no colour, the direct LSC-method is the most accurate and fastest option, while for darker coloured samples this method is not suitable because of high colour quenching. For such samples, two additional methods using a microwave digestion during sample preparation, produced good results. PMID:25577324

  15. Development and qualification of an antibody rapid deglycosylation method.

    PubMed

    Cook, K Steven; Bullock, Kevin; Sullivan, Timothy

    2012-03-01

    N-linked glycosylation can influence the biological activity and safety of an antibody as well as be a measure of the consistency of the production process. The released N-glycans is an important part of the development of a therapeutic antibody. The traditional method for N-glycan analysis requires complex and laborious sample preparation and lengthy analysis time. Two preparation steps with limited control are removal of the antibody backbone by ice-cold ethanol precipitation and water removal before 2-AB fluorescent dye labeling. Simplification of the sample preparation and better control of key steps that allows for the characterization/quantitation of glycans during all stages of development of a therapeutic antibody is desired. Recently Prozyme introduced a rapid deglycosylation kit and a rapid tagging kit that address some of these issues. The deglycosylation kit immobilizes the antibody on a membrane, thereby eliminating the precipitation step. An instant fluorescent tag kit eliminates the water removal before the 2-AB labeling step. In addition use of a new chromatography column can improve the glycan resolution and shorten the analysis time. The evaluation and qualification of the Rapid Deglycosylation Kit (RDK) and instant 2-AB tagging with the improved chromatography are highlighted. PMID:22257749

  16. Radiometric surveys in underground environment

    NASA Astrophysics Data System (ADS)

    Bochiolo, Massimo; Chiozzi, Paolo; Verdoya, Massimo; Pasquale, Vincenzo

    2010-05-01

    Due to their ability to travel through the air for several metres, gamma-rays emitted from natural radioactive elements can be successfully used in surveys carried out both with airborne and ground equipments. Besides the concentration of the radio-elements contained in rocks and soils and the intrinsic characteristics of the gamma-ray detector, the detected count rate depends on the solid angle around the spectrometer. On a flat outcrop, ground spectrometry detects the radiation ideally produced by a cylindrical mass of rock of about two metres in diameter and thickness of about half a meter. Under these geometrical conditions, the natural radioactivity can be easily evaluated. With operating conditions different from the standard ones, such as at the edge of an escarpment, the count rate halves because of the missing material, whereas in the vicinity of a rock wall the count rate will increase. In underground environment, the recorded count rate may even double and the in situ assessment of the concentration of radio-elements may be rather difficult, even if the ratios between the different radio-elements may not be affected. We tested the applicability of gamma-ray spectrometry for rapid assessment of the potential hazard levels related to radon and radiation dose rate in underground environment. A mine shaft, located in a zone of uranium enrichment in Liguria (Italy), has been investigated. A preliminary ground radiometric survey was carried out to define the extent of the ore deposit. Then, the radiometric investigation was focussed on the mine shaft. Due to rock mass above the shaft vault, the background gamma radiation can be considered of negligible influence on measurements. In underground surveys, besides deviations from a flat geometry, factors controlling radon exhalation, emanation and stagnation, such as fractures, water leakage and the presence of ventilation, should be carefully examined. We attempted to evaluate these control factors and collected

  17. A Rapid Method for the Diagnosis of Equine Virus Abortion

    PubMed Central

    Correa, W. M.

    1970-01-01

    Smears and imprints were made from the liver of 27 equine fetuses, believed to have aborted as a result of Equine Virus Abortion (EVA) infection. Several different fixatives and staining techniques were employed for the demonstration of typical intra-nuclear inclusion bodies in these preparations, and the following conclusions were reached. Methanol proved to be the best fixative and Pappenheim's panoptic method was the best staining technique, giving good contrast and definition of the inclusion bodies. Cytological methods provided a simple and rapid means of diagnosis, but histological sections provided evidence of lesions which was most useful when inclusion bodies were very difficult to find. However, cytological methods proved better than histological sections for the demonstration of EVA intranuclear inclusion bodies. ImagesFig. 1. PMID:4192198

  18. A Rapid Method for Refolding Cell Surface Receptors and Ligands

    PubMed Central

    Zhai, Lu; Wu, Ling; Li, Feng; Burnham, Robert S.; Pizarro, Juan C.; Xu, Bin

    2016-01-01

    Production of membrane-associated cell surface receptors and their ligands is often a cumbersome, expensive, and time-consuming process that limits detailed structural and functional characterization of this important class of proteins. Here we report a rapid method for refolding inclusion-body-based, recombinant cell surface receptors and ligands in one day, a speed equivalent to that of soluble protein production. This method efficiently couples modular on-column immobilized metal ion affinity purification and solid-phase protein refolding. We demonstrated the general utility of this method for producing multiple functionally active immunoreceptors, ligands, and viral decoys, including challenging cell surface proteins that cannot be produced using typical dialysis- or dilution-based refolding approaches. PMID:27215173

  19. Method for producing rapid pH changes

    DOEpatents

    Clark, John H.; Campillo, Anthony J.; Shapiro, Stanley L.; Winn, Kenneth R.

    1981-01-01

    A method of initiating a rapid pH change in a solution by irradiating the solution with an intense flux of electromagnetic radiation of a frequency which produces a substantial pK change to a compound in solution. To optimize the resulting pH change, the compound being irradiated in solution should have an excited state lifetime substantially longer than the time required to establish an excited state acid-base equilibrium in the solution. Desired pH changes can be accomplished in nanoseconds or less by means of picosecond pulses of laser radiation.

  20. Method for producing rapid pH changes

    DOEpatents

    Clark, J.H.; Campillo, A.J.; Shapiro, S.L.; Winn, K.R.

    A method of initiating a rapid pH change in a solution comprises irradiating the solution with an intense flux of electromagnetic radiation of a frequency which produces a substantial pK change to a compound in solution. To optimize the resulting pH change, the compound being irradiated in solution should have an excited state lifetime substantially longer than the time required to establish an excited state acid-base equilibrium in the solution. Desired pH changes can be accomplished in nanoseconds or less by means of picosecond pulses of laser radiation.

  1. A method to rapidly create protein aggregates in living cells

    PubMed Central

    Miyazaki, Yusuke; Mizumoto, Kota; Dey, Gautam; Kudo, Takamasa; Perrino, John; Chen, Ling-chun; Meyer, Tobias; Wandless, Thomas J.

    2016-01-01

    The accumulation of protein aggregates is a common pathological hallmark of many neurodegenerative diseases. However, we do not fully understand how aggregates are formed or the complex network of chaperones, proteasomes and other regulatory factors involved in their clearance. Here, we report a chemically controllable fluorescent protein that enables us to rapidly produce small aggregates inside living cells on the order of seconds, as well as monitor the movement and coalescence of individual aggregates into larger structures. This method can be applied to diverse experimental systems, including live animals, and may prove valuable for understanding cellular responses and diseases associated with protein aggregates. PMID:27229621

  2. Method for rapidly determining a pulp kappa number using spectrophotometry

    DOEpatents

    Chai, Xin-Sheng; Zhu, Jun Yong

    2002-01-01

    A system and method for rapidly determining the pulp kappa number through direct measurement of the potassium permanganate concentration in a pulp-permanganate solution using spectrophotometry. Specifically, the present invention uses strong acidification to carry out the pulp-permanganate oxidation reaction in the pulp-permanganate solution to prevent the precipitation of manganese dioxide (MnO.sub.2). Consequently, spectral interference from the precipitated MnO.sub.2 is eliminated and the oxidation reaction becomes dominant. The spectral intensity of the oxidation reaction is then analyzed to determine the pulp kappa number.

  3. Optical Imaging and Radiometric Modeling and Simulation

    NASA Technical Reports Server (NTRS)

    Ha, Kong Q.; Fitzmaurice, Michael W.; Moiser, Gary E.; Howard, Joseph M.; Le, Chi M.

    2010-01-01

    OPTOOL software is a general-purpose optical systems analysis tool that was developed to offer a solution to problems associated with computational programs written for the James Webb Space Telescope optical system. It integrates existing routines into coherent processes, and provides a structure with reusable capabilities that allow additional processes to be quickly developed and integrated. It has an extensive graphical user interface, which makes the tool more intuitive and friendly. OPTOOL is implemented using MATLAB with a Fourier optics-based approach for point spread function (PSF) calculations. It features parametric and Monte Carlo simulation capabilities, and uses a direct integration calculation to permit high spatial sampling of the PSF. Exit pupil optical path difference (OPD) maps can be generated using combinations of Zernike polynomials or shaped power spectral densities. The graphical user interface allows rapid creation of arbitrary pupil geometries, and entry of all other modeling parameters to support basic imaging and radiometric analyses. OPTOOL provides the capability to generate wavefront-error (WFE) maps for arbitrary grid sizes. These maps are 2D arrays containing digital sampled versions of functions ranging from Zernike polynomials to combination of sinusoidal wave functions in 2D, to functions generated from a spatial frequency power spectral distribution (PSD). It also can generate optical transfer functions (OTFs), which are incorporated into the PSF calculation. The user can specify radiometrics for the target and sky background, and key performance parameters for the instrument s focal plane array (FPA). This radiometric and detector model setup is fairly extensive, and includes parameters such as zodiacal background, thermal emission noise, read noise, and dark current. The setup also includes target spectral energy distribution as a function of wavelength for polychromatic sources, detector pixel size, and the FPA s charge

  4. Rapid Screening Method for Detection of Bacteria in Platelet Concentrates

    PubMed Central

    Ribault, S.; Harper, K.; Grave, L.; Lafontaine, C.; Nannini, P.; Raimondo, A.; Faure, I. Besson

    2004-01-01

    Public awareness has long focused on the risks of the transmission of viral agents through blood product transfusion. This risk, however, pales in comparison to the less publicized danger associated with the transfusion of blood products contaminated with bacteria, in particular, platelet concentrates. Up to 1,000 cases of clinical sepsis after the transfusion of platelet concentrates are reported annually in the United States. The condition is characterized by acute reaction symptoms and the rapid onset of septicemia and carries a 20 to 40% mortality rate. The urgent need for a method for the routine screening of platelet concentrates to improve patient safety has long been recognized. We describe the development of a rapid and highly sensitive method for screening for bacteria in platelet concentrates for transfusion. No culture period is required; and the entire procedure, from the time of sampling to the time that the final result is obtained, takes less than 90 min. The method involves three basic stages: the selective removal of platelets by filtration following activation with a monoclonal antibody, DNA-specific fluorescent labeling of bacteria, and concentration of the bacteria on a membrane surface for enumeration by solid-phase cytometry. The method offers a universal means of detection of live, nondividing, or dead gram-negative and gram-positive bacteria in complex cellular blood products. The sensitivity is higher than those of the culture-based methods available at present, with a detection limit of 10 to 102 CFU/ml, depending upon the bacterial strain. PMID:15131147

  5. Rapid screening method for detection of bacteria in platelet concentrates.

    PubMed

    Ribault, S; Harper, K; Grave, L; Lafontaine, C; Nannini, P; Raimondo, A; Faure, I Besson

    2004-05-01

    Public awareness has long focused on the risks of the transmission of viral agents through blood product transfusion. This risk, however, pales in comparison to the less publicized danger associated with the transfusion of blood products contaminated with bacteria, in particular, platelet concentrates. Up to 1,000 cases of clinical sepsis after the transfusion of platelet concentrates are reported annually in the United States. The condition is characterized by acute reaction symptoms and the rapid onset of septicemia and carries a 20 to 40% mortality rate. The urgent need for a method for the routine screening of platelet concentrates to improve patient safety has long been recognized. We describe the development of a rapid and highly sensitive method for screening for bacteria in platelet concentrates for transfusion. No culture period is required; and the entire procedure, from the time of sampling to the time that the final result is obtained, takes less than 90 min. The method involves three basic stages: the selective removal of platelets by filtration following activation with a monoclonal antibody, DNA-specific fluorescent labeling of bacteria, and concentration of the bacteria on a membrane surface for enumeration by solid-phase cytometry. The method offers a universal means of detection of live, nondividing, or dead gram-negative and gram-positive bacteria in complex cellular blood products. The sensitivity is higher than those of the culture-based methods available at present, with a detection limit of 10 to 10(2) CFU/ml, depending upon the bacterial strain. PMID:15131147

  6. A rapid method for the presurgical cleansing of hands.

    PubMed

    Decker, L A; Gross, A; Miller, F C; Read, J A; Cutright, D E; Devine, J

    1978-01-01

    A new rapid method of presurgical cleansing of the hands has been evaluated in a clinical setting. The effectiveness of a 90 second jet wash has been compared with a standard 10-minute presurgical scrub. Bacteriologic cultures were obtained from the fingertips of interns, residents, and staff of the Department of Obstetrics and Gynecology of the Walter Reed Army Medical Center before and after 90-second jet washings and 10-minute conventional scrubs. The results showed that the 90-second jet wash was more effective in degerming the hands than the 10-minute standard brush scrub. Other advantages of the new method, such as the amount of time saved, the standardization of cleansing, and reduced skin irritation are discussed. PMID:619330

  7. Rapid method for the examination of platelet morphology.

    PubMed

    Yamashiro, S; Bast, T; Basrur, P K

    1983-05-01

    A simple, rapid method is described for preparing platelets of domestic animals for light and electron microscopic examinations. The method involves the isolation of the platelet rich plasma (PRP) by centrifugation of the whole blood for five minutes followed by recentrifugation of PRP in a Wintrobe tube at 4500 rpm for 20 minutes to separate the blood components into four distinct layers composed exclusively of plasma, leucocytes, platelets and erythrocytes. A short fixation (20 minutes) by replacing the plasma layer with glutaraldehyde before breaking the bottom of the tube with a glass cutter allows the cellular contents to be gently pushed out of the tube in the form of a cylindrical semisolid pellet, with a wooden applicator stick. A further three hour fixation of the pellet in fresh glutaraldehyde before cutting out the middle layer for routine processing for light and electron microscopy provides pure preparation of platelets with a minimum of morphological distortion. PMID:6878891

  8. A rapid demodulation method for optical carrier based microwave interferometer

    NASA Astrophysics Data System (ADS)

    Chen, Zhen; Hefferman, Gerald; Wei, Tao

    2016-05-01

    This paper presents a rapid signal processing approach for OCMI system, which could significantly reduce the complexity of computations while maintaining decent performances. A direct phase demodulator can be pre-calibrated and applied to extract the absolute phase change to target reflectors at different locations, where the strain change can be found distributedly. Theoretical framework was conducted and to demo the concept, a strain test was performed with ultra-weak reflectors (-70 dB) under the OCMI system. The proposed method was applied to extract the distributed stain change along the fiber under test. Compared with the previous proposed method, no FIR filters and Fourier transform are involved. This algorithm holds the potential suitable for dynamic OCMI distributed sensing system.

  9. RAPID SEPARATION METHOD FOR EMERGENCY WATER AND URINE SAMPLES

    SciTech Connect

    Maxwell, S.; Culligan, B.

    2008-08-27

    The Savannah River Site Environmental Bioassay Lab participated in the 2008 NRIP Emergency Response program administered by the National Institute for Standards and Technology (NIST) in May, 2008. A new rapid column separation method was used for analysis of actinides and {sup 90}Sr the NRIP 2008 emergency water and urine samples. Significant method improvements were applied to reduce analytical times. As a result, much faster analysis times were achieved, less than 3 hours for determination of {sup 90}Sr and 3-4 hours for actinides. This represents a 25%-33% improvement in analysis times from NRIP 2007 and a {approx}100% improvement compared to NRIP 2006 report times. Column flow rates were increased by a factor of two, with no significant adverse impact on the method performance. Larger sample aliquots, shorter count times, faster cerium fluoride microprecipitation and streamlined calcium phosphate precipitation were also employed. Based on initial feedback from NIST, the SRS Environmental Bioassay Lab had the most rapid analysis times for actinides and {sup 90}Sr analyses for NRIP 2008 emergency urine samples. High levels of potential matrix interferences may be present in emergency samples and rugged methods are essential. Extremely high levels of {sup 210}Po were found to have an adverse effect on the uranium results for the NRIP-08 urine samples, while uranium results for NRIP-08 water samples were not affected. This problem, which was not observed for NRIP-06 or NRIP-07 urine samples, was resolved by using an enhanced {sup 210}Po removal step, which will be described.

  10. Three rapid methods compared with a conventional method for detection of urease production in anaerobic bacteria.

    PubMed Central

    Mills, C K; Grimes, B Y; Gherna, R L

    1987-01-01

    Three rapid methods (spot test, disk, and tube) for detecting urease production in anaerobic bacteria yielded results faster than the conventional method. The results were more consistent with the disk and tube methods than with the spot test. Blood agar plate growth gave more consistent results than growth from chopped-meat slants. PMID:3320087

  11. Rapid sampling for rapid analysis: A new method for VOCs in drinking water

    SciTech Connect

    Gardner, B.D.; Johnson, J.A.; Holland, J.F.

    1995-12-31

    Until recently, there has been only moderate emphasis placed on the time consumption of the sampling process in many gas chromatography/mass spectrometry (GC/MS) analyses. Historically, the total analysis time has been primarily dependent upon the chromatographic separation and detection steps, and significant decreases in sample preparation time have had little impact on overall sample throughput. The recent maturation of gas chromatography/time-of-flight mass spectrometry (GC/TOFMS) using time array detection has decreased chromatographic separation and mass spectrometric detection times by factors of 10 or more, leaving the sampling process as a significant and often limiting factor in the total analysis time. Current methods for the analysis of volatile organic compounds (VOCs) in drinking water utilize headspace or purge and trap techniques requiring 20-30 minute sampling times to extract these compounds for analysis by GC/MS. Solid-phase microextraction (SPME) has recently been presented as a viable alternative to the above methods. Sampling and desorption times of less than 10 minutes have been reported for part-per-billion levels of volatile organics in aqueous solution. These rapid times suggest a potential for combining SPME and GC/TOFMS technologies to create a methodology for high sample throughput.

  12. Rapid assessment methods of resilience for natural and agricultural systems.

    PubMed

    Torrico, Juan C; Janssens, Marc J J

    2010-12-01

    The resilience, ecological function and quality of both agricultural and natural systems were evaluated in the mountainous region of the Atlantic Rain Forest of Rio de Janeiro through Rapid Assessment Methods. For this goal new indicators were proposed, such as eco-volume, eco-height, bio-volume, volume efficiency, and resilience index. The following agricultural and natural systems have been compared according: (i) vegetables (leaf, fruit and mixed); (ii) citrus; (iii) ecological system; (iv) cattle, (v) silvo-pastoral system, (vi) forest fragment and (vii) forest in regeneration stage (1, 2 and 3 years old). An alternative measure (index) of resilience was proposed by considering the actual bio-volume as a function of the potential eco-volume. The objectives and hypotheses were fulfilled; it is shown that there does exist a high positive correlation between resilience index, biomass, energy efficiency and biodiversity. Cattle and vegetable systems have lowest resilience, whilst ecological and silvo-pastoral systems have greatest resilience. This new approach offers a rapid, though valuable assessment tool for ecological studies, agricultural development and landscape planning, particularly in tropical countries. PMID:21152779

  13. Rapid method for the interconnection of single nano-objects

    NASA Astrophysics Data System (ADS)

    Della Torre, A.; Monteduro, A. G.; Maruccio, G.; Pugliese, M.; Ferrara, F.; Ercolani, D.; Roddaro, S.; Sorba, L.; Rinaldi, R.

    2015-05-01

    Increasing the ease and the rapidity of processing in micro and nanotechnology is an ongoing task, which is pursued in both the academic environment for investigation of novel systems and in industry for fabrication of complex circuits on a large scale. In the field of nanoelectronics, the major challenge is to demonstrate a feasible method for device implementation based on individual nanosize objects, such as nanowires, nanotubes and nanocrystals. However, integrating these small objects in a macroscopic circuit is a difficult task. So far, nanostructures have been wired by highly sophisticated techniques not suitable for large-scale integration in macroscopic circuits, such as electron-beam lithography or focused ion-beam deposition. Here we present a ‘one-pot’ and rapid approach to electrically interconnect individual nanowires from random spatial distribution, with high spatial and positioning resolution and a remarkable reduction in overall fabrication time with respect to the other expensive and laborious techniques. The reliability of such technique is demonstrated by implementing a single semiconductor nanowire device

  14. Rapid method for the isolation of mammalian sperm DNA

    PubMed Central

    Wu, Haotian; de Gannes, Matthew K.; Luchetti, Gianna; Pilsner, J. Richard

    2015-01-01

    The unique DNA packaging of spermatozoa renders them resistant to DNA isolation techniques used for somatic cells, requiring alternative methods that are slow and labor intensive. Here we present a rapid method for isolating high-quality sperm DNA. Isolated human sperm cells were homogenized with 0.2 mm steel beads for 5 min at room temperature in the presence of guanidine thiocyanate lysis buffer supplemented with 50 mM tris(2-carboxyethyl)phosphine (TCEP). Our method yielded >90% high-quality DNA using 3 different commercially available silica-based spin columns. DNA yields did not differ between immediate isolation (2.84 ± 0.04 pg/cell) and isolation after 2 weeks of homogenate storage at room temperature (2.91 ± 0.13 pg/cell). DNA methylation analyses revealed similar methylation levels at both time points for three imprinted loci. Our protocol has many advantages: it is conducted at room temperature; lengthy proteinase K (ProK) digestions are eliminated; the reducing agent, TCEP, is odorless and stable at room temperature; nucleic acids are stabilized, allowing storage of homogenate; and it is adaptable for other mammalian species. Taken together, the benefits of our improved method have important implications for settings where sample processing constraints exist. PMID:26054765

  15. Rapid method for the isolation of mammalian sperm DNA.

    PubMed

    Wu, Haotian; de Gannes, Matthew K; Luchetti, Gianna; Pilsner, J Richard

    2015-06-01

    The unique DNA packaging of spermatozoa renders them resistant to DNA isolation techniques used for somatic cells, requiring alternative methods that are slow and labor intensive. Here we present a rapid method for isolating high-quality sperm DNA. Isolated human sperm cells were homogenized with 0.2 mm steel beads for 5 min at room temperature in the presence of guanidine thiocyanate lysis buffer supplemented with 50 mM tris(2-carboxyethyl)phosphine (TCEP). Our method yielded >90% high-quality DNA using 3 different commercially available silica-based spin columns. DNA yields did not differ between immediate isolation (2.84 ± 0.04 pg/cell) and isolation after 2 weeks of homogenate storage at room temperature (2.91 ± 0.13 pg/cell). DNA methylation analyses revealed similar methylation levels at both time points for three imprinted loci. Our protocol has many advantages: it is conducted at room temperature; lengthy proteinase K (ProK) digestions are eliminated; the reducing agent, TCEP, is odorless and stable at room temperature; nucleic acids are stabilized, allowing storage of homogenate; and it is adaptable for other mammalian species. Taken together, the benefits of our improved method have important implications for settings where sample processing constraints exist. PMID:26054765

  16. Rapid identification of cytokinins by an immunological method

    SciTech Connect

    Morris, R.O.; Jameson, P.E.; Morris, J.W. ); Laloue, M. )

    1991-04-01

    A method for rapid identification of bacterial cytokinins has been developed in which cultures are fed ({sup 3}H)adenine, the cytokinins (including, {sup 3}H-labeled cytokinins) are isolated by immunoaffinity chromatography, and analyzed by HPLC with on-line scintillation counting. Analysis of Agrobacterium tumefaciens strains showed that some produced primarily trans-zeatin, whereas others produced primarily trans-zeatin riboside. Pseudomonas syringae pv savastanoi produced mixtures of transzeatin, dihydrozeatin, 1{double prime}-methyl-trans-zeatin riboside, and other unknown cytokinin-like substances. Corynebacterium fascians, produced cis-zeatin, isopentenyladenine and isopentenyladenosine. The technique is designed for qualitative rather than quantitative studies and allows ready identification of bacterial cytokinins. It may also have utility in the study of plant cytokinins if adequate incorporation of label into cytokinin precursor pools can be achieved.

  17. A simple method for rapidly processing HEU from weapons returns

    SciTech Connect

    McLean, W. II; Miller, P.E.

    1994-01-01

    A method based on the use of a high temperature fluidized bed for rapidly oxidizing, homogenizing and down-blending Highly Enriched Uranium (HEU) from dismantled nuclear weapons is presented. This technology directly addresses many of the most important issues that inhibit progress in international commerce in HEU; viz., transaction verification, materials accountability, transportation and environmental safety. The equipment used to carry out the oxidation and blending is simple, inexpensive and highly portable. Mobile facilities to be used for point-of-sale blending and analysis of the product material are presented along with a phased implementation plan that addresses the conversion of HEU derived from domestic weapons and related waste streams as well as material from possible foreign sources such as South Africa or the former Soviet Union.

  18. Method for rapid, high sensitivity tritiated water extraction

    SciTech Connect

    Failor, R.; Belovodsky, L.; Gaevoy, V.; Golubev, A.

    1997-04-20

    We have developed a thermal vacuum desorption process to rapidly extract water from environmental samples for tritium analysis. Thermal vacuum desorption allows for extraction of the moisture from the sample within a few hours in a form and quantity suitable for liquid scintillation counting and allows detection of tritium at the levels of <2 Bq/L of milk, <0.5 Bq/gm of vegetation, and < 0.5 Bq/gin of soil. We developed a prototype unit that can process batches of twenty or more samples within 24 hours. Early data shows that a high percentage of water is extracted reproducibly without enrichment or depletion of the tritium content. The quench coefficient of the extracted water is low allowing for accurate, direct liquid scintillation counting. Excellent comparison has been observed with results using freeze-dry lypholization as the water extraction method.

  19. Method for rapid base sequencing in DNA and RNA

    DOEpatents

    Jett, J.H.; Keller, R.A.; Martin, J.C.; Moyzis, R.K.; Ratliff, R.L.; Shera, E.B.; Stewart, C.C.

    1987-10-07

    A method is provided for the rapid base sequencing of DNA or RNA fragments wherein a single fragment of DNA or RNA is provided with identifiable bases and suspended in a moving flow stream. An exonuclease sequentially cleaves individual bases from the end of the suspended fragment. The moving flow stream maintains the cleaved bases in an orderly train for subsequent detection and identification. In a particular embodiment, individual bases forming the DNA or RNA fragments are individually tagged with a characteristic fluorescent dye. The train of bases is then excited to fluorescence with an output spectrum characteristic of the individual bases. Accordingly, the base sequence of the original DNA or RNA fragment can be reconstructed. 2 figs.

  20. Statistical Methods for Rapid Aerothermal Analysis and Design Technology: Validation

    NASA Technical Reports Server (NTRS)

    DePriest, Douglas; Morgan, Carolyn

    2003-01-01

    The cost and safety goals for NASA s next generation of reusable launch vehicle (RLV) will require that rapid high-fidelity aerothermodynamic design tools be used early in the design cycle. To meet these requirements, it is desirable to identify adequate statistical models that quantify and improve the accuracy, extend the applicability, and enable combined analyses using existing prediction tools. The initial research work focused on establishing suitable candidate models for these purposes. The second phase is focused on assessing the performance of these models to accurately predict the heat rate for a given candidate data set. This validation work compared models and methods that may be useful in predicting the heat rate.

  1. Method for rapid base sequencing in DNA and RNA

    DOEpatents

    Jett, James H.; Keller, Richard A.; Martin, John C.; Moyzis, Robert K.; Ratliff, Robert L.; Shera, E. Brooks; Stewart, Carleton C.

    1990-01-01

    A method is provided for the rapid base sequencing of DNA or RNA fragments wherein a single fragment of DNA or RNA is provided with identifiable bases and suspended in a moving flow stream. An exonuclease sequentially cleaves individual bases from the end of the suspended fragment. The moving flow stream maintains the cleaved bases in an orderly train for subsequent detection and identification. In a particular embodiment, individual bases forming the DNA or RNA fragments are individually tagged with a characteristic fluorescent dye. The train of bases is then excited to fluorescence with an output spectrum characteristic of the individual bases. Accordingly, the base sequence of the original DNA or RNA fragment can be reconstructed.

  2. Method for rapid base sequencing in DNA and RNA

    DOEpatents

    Jett, J.H.; Keller, R.A.; Martin, J.C.; Moyzis, R.K.; Ratliff, R.L.; Shera, E.B.; Stewart, C.C.

    1990-10-09

    A method is provided for the rapid base sequencing of DNA or RNA fragments wherein a single fragment of DNA or RNA is provided with identifiable bases and suspended in a moving flow stream. An exonuclease sequentially cleaves individual bases from the end of the suspended fragment. The moving flow stream maintains the cleaved bases in an orderly train for subsequent detection and identification. In a particular embodiment, individual bases forming the DNA or RNA fragments are individually tagged with a characteristic fluorescent dye. The train of bases is then excited to fluorescence with an output spectrum characteristic of the individual bases. Accordingly, the base sequence of the original DNA or RNA fragment can be reconstructed. 2 figs.

  3. A rapid protection switching method in carrier ethernet ring networks

    NASA Astrophysics Data System (ADS)

    Yuan, Liang; Ji, Meng

    2008-11-01

    Abstract: Ethernet is the most important Local Area Network (LAN) technology since more than 90% data traffic in access layer is carried on Ethernet. From 10M to 10G, the improving Ethernet technology can be not only used in LAN, but also a good choice for MAN even WAN. MAN are always constructed in ring topology because the ring network could provide resilient path protection by using less resource (fibre or cable) than other network topologies. In layer 2 data networks, spanning tree protocol (STP) is always used to protect transmit link and preventing the formation of logic loop in networks. However, STP cannot guarantee the efficiency of service convergence when link fault happened. In fact, convergent time of networks with STP is about several minutes. Though Rapid Spanning Tree Protocol (RSTP) and Multi-Spanning Tree Protocol (MSTP) improve the STP technology, they still need a couple of seconds to achieve convergence, and can not provide sub-50ms protection switching. This paper presents a novel rapid ring protection method (RRPM) for carrier Ethernet. Unlike other link-fault detection method, it adopts distributed algorithm to detect link fault rapidly (sub-50ms). When networks restore from link fault, it can revert to the original working state. RRPM can provide single ring protection and interconnected ring protection without the formation of super loop. In normal operation, the master node blocks the secondary port for all non-RRPM Ethernet frames belonging to the given RRPM Ring, thereby avoiding a loop in the ring. When link fault happens, the node on which the failure happens moves from the "ring normal" state to the "ring fault" state. It also sends "link down" frame immediately to other nodes and blocks broken port and flushes its forwarding database. Those who receive "link down" frame will flush forwarding database and master node should unblock its secondary port. When the failure restores, the whole ring will revert to the normal state. That is

  4. Rapid alkaline extraction method for the isolation of plasmid DNA

    SciTech Connect

    Birnboim, H.C.

    1983-01-01

    Plasmids are double-stranded circular DNA molecules that have the property of self-replication, independent of chromosomal DNA. Although the presence of a plasmid in a bacterial cell may be detected genetically as a change in phenotype, often it is necessary to isolate plasmid DNA for molecular studies, such as size determination, restriction enzyme mapping, and nucleotide sequencing, or for the construction of new hybrid plasmids. The degree of purification required will depend upon the intended use. Less purified plasmid DNA is often satisfactory for recombinant DNA studies, and a large number of shorter and simpler methods have been developed. This chapter describes one such method that uses an alkaline extraction step. It is rapid enough to be used as a screening method, permitting 50-100 or more samples to be extracted in a few hours. The DNA is sufficiently pure to be digestible by restriction enzymes, an important advantage for screening. A preparative version that allows isolation of larger quantities of more highly purified material is also described.

  5. Statistical synthesis of multiantenna ultrawideband radiometric complexes

    NASA Astrophysics Data System (ADS)

    Volosyuk, V. K.; Kravchenko, V. F.; Pavlikov, V. V.; Pustovoit, V. I.

    2016-04-01

    An optimum signal processing algorithm of radiometric imaging has been synthesized for the first time using multiantenna ultrawideband (UWB) radiometric complexes (RMCs). Radiometric images (RMI) are interpreted physically as intensity depending on the angular coordinates or the spectral radio brightness averaged in the operation frequency band. In accordance with the synthesized algorithm, a structural scheme of ultrawideband radiometric complexes has been developed. An analytical expression for the ambiguity function of radiometric complexes has been obtained. The ambiguity function is modeled in the case of processing narrowband and ultrawideband radiometric signals. As follows from the analysis of the results, new elements of the theory of optimum processing of UWB radiometric signals with the involvement of multielement antenna systems are an important tool in creating highly accurate, biologically and ecologically safe complexes for studying various media and objects.

  6. Rapid tooling method for soft customized removable oral appliances.

    PubMed

    Salmi, Mika; Tuomi, Jukka; Sirkkanen, Rauno; Ingman, Tuula; Mäkitie, Antti

    2012-01-01

    Traditionally oral appliances i.e. removable orthodontic appliances, bite splints and snoring / sleep apnea appliances are made with alginate impressions and wax registrations. Our aim was to describe the process of manufacturing customized oral appliances with a new technique i.e. rapid tooling method. The appliance should ideally be custom made to match the teeth. An orthodontic patient, scheduled for conventional orthodontic treatment, served as a study subject. After a precise clinical and radiographic examination, the approach was to digitize the patient's dental arches and then to correct them virtually by computer. Additive manufacturing was then used to fabricate a mould for a soft customized appliance. The mould was manufactured using stereolithography from Somos ProtoGen O-XT 18420 material. Casting material for the mould to obtain the final appliance was silicone. As a result we managed to create a customized soft orthodontic appliance. Also, the accuracy of the method was found to be adequate. Two versions of the described device were manufactured: one with small and one with moderate orthodontic force. The study person also gave information on the subjective patient adaptation aspects of the oral appliance. PMID:22615719

  7. Rapid Tooling Method for Soft Customized Removable Oral Appliances

    PubMed Central

    Salmi, Mika; Tuomi, Jukka; Sirkkanen, Rauno; Ingman, Tuula; Mäkitie, Antti

    2012-01-01

    Traditionally oral appliances i.e. removable orthodontic appliances, bite splints and snoring / sleep apnea appliances are made with alginate impressions and wax registrations. Our aim was to describe the process of manufacturing customized oral appliances with a new technique i.e. rapid tooling method. The appliance should ideally be custom made to match the teeth. An orthodontic patient, scheduled for conventional orthodontic treatment, served as a study subject. After a precise clinical and radiographic examination, the approach was to digitize the patient’s dental arches and then to correct them virtually by computer. Additive manufacturing was then used to fabricate a mould for a soft customized appliance. The mould was manufactured using stereolithography from Somos ProtoGen O-XT 18420 material. Casting material for the mould to obtain the final appliance was silicone. As a result we managed to create a customized soft orthodontic appliance. Also, the accuracy of the method was found to be adequate. Two versions of the described device were manufactured: one with small and one with moderate orthodontic force. The study person also gave information on the subjective patient adaptation aspects of the oral appliance. PMID:22615719

  8. Method for Rapid Protein Identification in a Large Database

    PubMed Central

    Zhang, Wenli; Zhao, Xiaofang

    2013-01-01

    Protein identification is an integral part of proteomics research. The available tools to identify proteins in tandem mass spectrometry experiments are not optimized to face current challenges in terms of identification scale and speed owing to the exponential growth of the protein database and the accelerated generation of mass spectrometry data, as well as the demand for nonspecific digestion and post-modifications in complex-sample identification. As a result, a rapid method is required to mitigate such complexity and computation challenges. This paper thus aims to present an open method to prevent enzyme and modification specificity on a large database. This paper designed and developed a distributed program to facilitate application to computer resources. With this optimization, nearly linear speedup and real-time support are achieved on a large database with nonspecific digestion, thus enabling testing with two classical large protein databases in a 20-blade cluster. This work aids in the discovery of more significant biological results, such as modification sites, and enables the identification of more complex samples, such as metaproteomics samples. PMID:24000323

  9. Rapid Method for Escherichia coli in the Cuyahoga River

    USGS Publications Warehouse

    Brady, Amie M.G.

    2007-01-01

    This study is a continuation of a previous U.S. Geological Survey (USGS) project in cooperation with the National Park Service at Cuyahoga Valley National Park in Brecksville, Ohio. A rapid (1-hour) method for detecting Escherichia coli (E. coli) in water was tested and compared to the standard (24-hour) method for determining E. coli concentrations. Environmental data were collected to determine turbidity, rainfall, and streamflow at the time of sampling. In the previous study (2004-5), data collected were used to develop predictive models to determine recreational water quality in the river at two sites within the park. Data collected during this continued study (2006) were used to test these models. At Jaite, a centrally located site within the park, the model correctly predicted exceedances or nonexceedances of the Ohio Environmental Protection Agency maximum for recreational water quality in 80 percent of samples. At Old Portage, a site near the upstream boundary of the park, the model correctly predicted recreational water quality in 58 percent of samples. All of the data collected in 2004-6 will be used to develop more accurate models for use in future studies. Analysis and discussion of model results are scheduled to be included in an upcoming USGS Scientific Investigations Report.

  10. Assessment of VIIRS radiometric performance using vicarious calibration sites

    NASA Astrophysics Data System (ADS)

    Uprety, Sirish; Cao, Changyong; Blonski, Slawomir; Wang, Wenhui

    2014-09-01

    Radiometric performance of satellite instruments needs to be regularly monitored to determine if there is any drift in the instrument response over time despite the calibration with the best effort. If a drift occurs, it needs to be characterized in order to keep the radiometric accuracy and stability well within the specification. Instrument gain change over time can be validated independently using many techniques such as using stable earth targets (desert, ocean, snow sites etc), inter-comparison with other well calibrated radiometers (using SNO, SNO-x), deep convective clouds (DCC), lunar observations or other methods. This study focus on using vicarious calibration sites for the assessment of radiometric performance of Suomi National Polar-Orbiting Partnership (S-NPP) Visible Infrared Imaging Radiometer Suite (VIIRS) reflective solar bands. The calibration stability is primarily analyzed by developing the top-of-atmosphere (TOA) reflectance time series over these sites. In addition, the radiometric bias relative to AQUA MODIS is estimated over these calibration sites and analyzed. The radiometric bias is quantified in terms of observed and spectral bias. The spectral characterization and bias analysis will be performed using hyperspectral measurements and radiative transfer models such as MODTRAN.

  11. Fundus image change analysis: geometric and radiometric normalization

    NASA Astrophysics Data System (ADS)

    Shin, David S.; Kaiser, Richard S.; Lee, Michael S.; Berger, Jeffrey W.

    1999-06-01

    Image change analysis will potentiate fundus feature quantitation in natural history and intervention studies for major blinding diseases such as age-related macular degeneration and diabetic retinopathy. Geometric and radiometric normalization of fundus images acquired at two points in time are required for accurate change detection, but existing methods are unsatisfactory for change analysis. We have developed and explored algorithms for correction of image misalignment (geometric) and inter- and intra-image brightness variation (radiometric) in order to facilitate highly accurate change detection. Thirty-five millimeter color fundus photographs were digitized at 500 to 1000 dpi. Custom-developed registration algorithms correcting for translation only; translation and rotation; translation, rotation, and scale; and polynomial based image-warping algorithms allowed for exploration of registration accuracy required for change detection. Registration accuracy beyond that offered by rigid body transformation is required for accurate change detection. Radiometric correction required shade-correction and normalization of inter-image statistical parameters. Precise geometric and radiometric normalization allows for highly accurate change detection. To our knowledge, these results are the first demonstration of the combination of geometric and radiometric normalization offering sufficient accuracy to allow for accurate fundus image change detection potentiating longitudinal study of retinal disease.

  12. Absolute Radiometric Calibration of KOMPSAT-3A

    NASA Astrophysics Data System (ADS)

    Ahn, H. Y.; Shin, D. Y.; Kim, J. S.; Seo, D. C.; Choi, C. U.

    2016-06-01

    This paper presents a vicarious radiometric calibration of the Korea Multi-Purpose Satellite-3A (KOMPSAT-3A) performed by the Korea Aerospace Research Institute (KARI) and the Pukyong National University Remote Sensing Group (PKNU RSG) in 2015.The primary stages of this study are summarized as follows: (1) A field campaign to determine radiometric calibrated target fields was undertaken in Mongolia and South Korea. Surface reflectance data obtained in the campaign were input to a radiative transfer code that predicted at-sensor radiance. Through this process, equations and parameters were derived for the KOMPSAT-3A sensor to enable the conversion of calibrated DN to physical units, such as at-sensor radiance or TOA reflectance. (2) To validate the absolute calibration coefficients for the KOMPSAT-3A sensor, we performed a radiometric validation with a comparison of KOMPSAT-3A and Landsat-8 TOA reflectance using one of the six PICS (Libya 4). Correlations between top-of-atmosphere (TOA) radiances and the spectral band responses of the KOMPSAT-3A sensors at the Zuunmod, Mongolia and Goheung, South Korea sites were significant for multispectral bands. The average difference in TOA reflectance between KOMPSAT-3A and Landsat-8 image over the Libya 4, Libya site in the red-green-blue (RGB) region was under 3%, whereas in the NIR band, the TOA reflectance of KOMPSAT-3A was lower than the that of Landsat-8 due to the difference in the band passes of two sensors. The KOMPSAT-3Aensor includes a band pass near 940 nm that can be strongly absorbed by water vapor and therefore displayed low reflectance. Toovercome this, we need to undertake a detailed analysis using rescale methods, such as the spectral bandwidth adjustment factor.

  13. Rapid simulation of spatial epidemics: a spectral method.

    PubMed

    Brand, Samuel P C; Tildesley, Michael J; Keeling, Matthew J

    2015-04-01

    Spatial structure and hence the spatial position of host populations plays a vital role in the spread of infection. In the majority of situations, it is only possible to predict the spatial spread of infection using simulation models, which can be computationally demanding especially for large population sizes. Here we develop an approximation method that vastly reduces this computational burden. We assume that the transmission rates between individuals or sub-populations are determined by a spatial transmission kernel. This kernel is assumed to be isotropic, such that the transmission rate is simply a function of the distance between susceptible and infectious individuals; as such this provides the ideal mechanism for modelling localised transmission in a spatial environment. We show that the spatial force of infection acting on all susceptibles can be represented as a spatial convolution between the transmission kernel and a spatially extended 'image' of the infection state. This representation allows the rapid calculation of stochastic rates of infection using fast-Fourier transform (FFT) routines, which greatly improves the computational efficiency of spatial simulations. We demonstrate the efficiency and accuracy of this fast spectral rate recalculation (FSR) method with two examples: an idealised scenario simulating an SIR-type epidemic outbreak amongst N habitats distributed across a two-dimensional plane; the spread of infection between US cattle farms, illustrating that the FSR method makes continental-scale outbreak forecasting feasible with desktop processing power. The latter model demonstrates which areas of the US are at consistently high risk for cattle-infections, although predictions of epidemic size are highly dependent on assumptions about the tail of the transmission kernel. PMID:25659478

  14. Antimicrobial susceptibility of rapidly growing mycobacteria using the rapid colorimetric method.

    PubMed

    Ramis, I B; Cnockaert, M; von Groll, A; Nogueira, C L; Leão, S C; Andre, E; Simon, A; Palomino, J C; da Silva, P E A; Vandamme, P; Martin, A

    2015-07-01

    Drug susceptibility testing (DST) of rapidly growing mycobacteria (RGM) are recommended for guiding the antimicrobial therapy. We have evaluated the use of resazurin in Mueller-Hinton medium (MHR) for MIC determination of RGM and compared the results with those obtained with the reference standard broth microdilution in Mueller-Hinton (MH) and with the resazurin microtiter assay (REMA) in 7H9 broth. The MIC of eight drugs: amikacin (AMI), cefoxitin (FOX), ciprofloxacin (CIP), clarithromycin (CLA), doxycycline (DOX), linezolid (LZD), moxifloxacin (MXF) and trimethoprim-sulfamethoxazole (TMP-SMX) were evaluated against 76 RGM (18 species) using three methods (MH, MHR, and REMA) in a 96-well plate format incubated at 37 °C over 3-5 days. Results obtained in the MH plates were interpreted by the appearance of turbidity at the bottom of the well before adding the resazurin. MHR and 7H9-REMA plates were read by visual observation for a change in color from blue to pink. The majority of results were obtained at day 5 for MH and 1 day after for MHR and 7H9-REMA. However, the preliminary experiment on time to positivity results using the reference strain showed that the resazurin can be added to the MH at day 2 to produce the results at day 3, but future studies with large sets of strains are required to confirm this suggestion. A high level of agreement (kappa 1.000-0.884) was obtained between the MH and the MHR. Comparison of results obtained with 7H9-REMA, on the other hand, revealed several discrepancies and a lower level of agreement (kappa 1.000-0.111). The majority of the strains were resistant to DOX and TMP-SMX, and the most active antimicrobials for RGM were AMI and FOX. In the present study, MHR represented an excellent alternative for MIC determination of RGM. The results could be read reliably, more easily, and more quickly than with the classical MH method. PMID:25820290

  15. A Microwave Radiometric Method to Obtain the Average Path Profile of Atmospheric Temperature and Humidity Structure Parameters and Its Application to Optical Propagation System Assessment

    NASA Technical Reports Server (NTRS)

    Manning, Robert M.; Vyhnalek, Brian E.

    2015-01-01

    The values of the key atmospheric propagation parameters Ct2, Cq2, and Ctq are highly dependent upon the vertical height within the atmosphere thus making it necessary to specify profiles of these values along the atmospheric propagation path. The remote sensing method suggested and described in this work makes use of a rapidly integrating microwave profiling radiometer to capture profiles of temperature and humidity through the atmosphere. The integration times of currently available profiling radiometers are such that they are approaching the temporal intervals over which one can possibly make meaningful assessments of these key atmospheric parameters. Since these parameters are fundamental to all propagation conditions, they can be used to obtain Cn2 profiles for any frequency, including those for an optical propagation path. In this case the important performance parameters of the prevailing isoplanatic angle and Greenwood frequency can be obtained. The integration times are such that Kolmogorov turbulence theory and the Taylor frozen-flow hypothesis must be transcended. Appropriate modifications to these classical approaches are derived from first principles and an expression for the structure functions are obtained. The theory is then applied to an experimental scenario and shows very good results.

  16. On-orbit radiometric calibration of Earth-observing sensors using the Radiometric Calibration Test Site (RadCaTS)

    NASA Astrophysics Data System (ADS)

    Czapla-Myers, Jeffrey S.; Leisso, Nathan P.; Anderson, Nikolaus J.; Biggar, Stuart F.

    2012-06-01

    Vicarious techniques are used to provide supplemental radiometric calibration data for sensors with onboard calibration systems, and are increasingly important for sensors without onboard calibration systems. The Radiometric Calibration Test Site (RadCaTS) is located at Railroad Valley, Nevada. It is a facility that was developed with the goal of increasing the amount of ground-based radiometric calibration data that are collected annually while maintaining the current level of radiometric accuracy produced by traditional manned field campaigns. RadCaTS is based on the reflectance-based approach, and currently consists of a Cimel sun photometer to measure the atmosphere, a weather station to monitor meteorological conditions, and ground-viewing radiometers (GVRs) that are used the determine the surface reflectance throughout the 1 × 1-km area. The data from these instruments are used in MODTRAN5 to determine the at-sensor spectral radiance at the time of overpass. This work describes the RadCaTS concept, the instruments used to obtain the data, and the processing method used to determine the surface reflectance and top-of-atmosphere spectral radiance. A discussion on the design and calibration of three new eight-channel GVRs is introduced, and the surface reflectance retrievals are compared to in situ measurements. Radiometric calibration results determined using RadCaTS are compared to Landsat 7 ETM+, MODIS, and MISR.

  17. Landsat-5 TM reflective-band absolute radiometric calibration

    USGS Publications Warehouse

    Chander, G.; Helder, D.L.; Markham, B.L.; Dewald, J.D.; Kaita, E.; Thome, K.J.; Micijevic, E.; Ruggles, T.A.

    2004-01-01

    The Landsat-5 Thematic Mapper (TM) sensor provides the longest running continuous dataset of moderate spatial resolution remote sensing imagery, dating back to its launch in March 1984. Historically, the radiometric calibration procedure for this imagery used the instrument's response to the Internal Calibrator (IC) on a scene-by-scene basis to determine the gain and offset of each detector. Due to observed degradations in the IC, a new procedure was implemented for U.S.-processed data in May 2003. This new calibration procedure is based on a lifetime radiometric calibration model for the instrument's reflective bands (1-5 and 7) and is derived, in part, from the IC response without the related degradation effects and is tied to the cross calibration with the Landsat-7 Enhanced Thematic Mapper Plus. Reflective-band absolute radiometric accuracy of the instrument tends to be on the order of 7% to 10%, based on a variety of calibration methods.

  18. Radiometric Dating in Geology.

    ERIC Educational Resources Information Center

    Pankhurst, R. J.

    1980-01-01

    Described are several aspects and methods of quantitatively measuring geologic time using a constant-rate natural process of radioactive decay. Topics include half lives and decay constants, radiogenic growth, potassium-argon dating, rubidium-strontium dating, and the role of geochronology in support of geological exploration. (DS)

  19. Rapid and simple method for purification of nucleic acids.

    PubMed Central

    Boom, R; Sol, C J; Salimans, M M; Jansen, C L; Wertheim-van Dillen, P M; van der Noordaa, J

    1990-01-01

    We have developed a simple, rapid, and reliable protocol for the small-scale purification of DNA and RNA from, e.g., human serum and urine. The method is based on the lysing and nuclease-inactivating properties of the chaotropic agent guanidinium thiocyanate together with the nucleic acid-binding properties of silica particles or diatoms in the presence of this agent. By using size-fractionated silica particles, nucleic acids (covalently closed circular, relaxed circular, and linear double-stranded DNA; single-stranded DNA; and rRNA) could be purified from 12 different specimens in less than 1 h and were recovered in the initial reaction vessel. Purified DNA (although significantly sheared) was a good substrate for restriction endonucleases and DNA ligase and was recovered with high yields (usually over 50%) from the picogram to the microgram level. Copurified rRNA was recovered almost undegraded. Substituting size-fractionated silica particles for diatoms (the fossilized cell walls of unicellular algae) allowed for the purification of microgram amounts of genomic DNA, plasmid DNA, and rRNA from cell-rich sources, as exemplified for pathogenic gram-negative bacteria. In this paper, we show representative experiments illustrating some characteristics of the procedure which may have wide application in clinical microbiology. Images PMID:1691208

  20. Rapid evaluation methods (REM) of health services performance: methodological observations.

    PubMed

    Anker, M; Guidotti, R J; Orzeszyna, S; Sapirie, S A; Thuriaux, M C

    1993-01-01

    The rapid evaluation method (REM) was developed by WHO in order to assess the performance and quality of health care services, identify operational problems, and assist in taking managerial action. It was tested in five developing countries (Botswana, Madagascar, Papua New Guinea, Uganda and Zambia) between 1988 and 1991. REM consists of a set of observation- and survey-based diagnostic activities, carried out mainly in health care facilities. The article describes the various steps of REM, methodological issues such as setting objectives and using an issue-information matrix, preparation of survey instruments, use of computer software (Epi Info), data quality control, fieldwork, and the use of data to produce useful information for decision-makers. REM aims at bringing prompt and relevant information to planners and decision-makers who need it for a specific purpose. In the present examples, REM provided information for preparing a programme proposal for external funding, for establishing baseline data for a situation analysis, and for assessing staff performance after extensive training in order to improve the curriculum. PMID:8440033

  1. Radiometric Calibration of Earth-Observing Sensors Using the Radiometric Calibration Test Site (RadCaTS)

    NASA Astrophysics Data System (ADS)

    Czapla-Myers, J.; Anderson, N. J.; Thome, K. J.; Biggar, S. F.

    2014-12-01

    The Remote Sensing Group (RSG) of the College of Optical Sciences at the University of Arizona uses the reflectance-based approach to perform the absolute radiometric calibration of such sensors as Landsat 5 TM, Landsat 7 ETM+, Landsat 8 OLI, Terra and Aqua MODIS, ASTER, RapidEye, and others. The reflectance-based approach requires that personnel be present at a test site during the sensor overpass, so the Radiometric Calibration Test Site (RadCaTS) was developed in order to capture data during every possible overpass, which assists in the temporal trending of the radiometric calibration of earth-observing sensors. The number of earth-observing sensors is rapidly increasing in recent years, and RadCaTS provides the ability to radiometrically calibrate them without the requirement of frequent field campaigns. The 2013 launch of Landsat 8 provides a unique opportunity for RadCaTS in that it is being used to supplement the in situ measurements by RSG ground personnel, and it will be used throughout the lifetime of the Landsat 8 mission. This allows more data to be collected throughout the year, and it also allows the accuracy and uncertainty of RadCaTS to be analyzed. The current top-of-atmosphere (TOA) spectral radiance uncertainty of the reflectance-based approach is ~2.6% in the mid-visible region of the spectrum, and current work indicates that the uncertainty of RadCaTS in TOA spectral radiance is ~3-4%. This work presents the radiometric calibration results of RadCaTS for a variety of sensors such as Landsat 7 ETM+, Landsat 8 OLI, Terra and Aqua MODIS, MISR, ASTER, and Suomi NPP VIIRS.

  2. Sentinel-3 OLCI Radiometric and Spectral Performance Activities

    NASA Astrophysics Data System (ADS)

    Bourg, L.; Blanot, L.; Lamquin, N.; Bruniquel, V.; Meskini, N.; Nieke, J.; Bouvet, M.; Fougnie, B.

    2015-12-01

    The paper presents the activities to be undertaken by ACRI-ST under ESA/ESTEC coordination for the assessment of OLCI Radiometric and Spectral Performances during the SENTINEL-3 Commissioning Phase. As an introduction, it briefly describes the instrument concept and available on-board calibration hardware, the context and main objective of the work. Insisting on the fact that radiometric calibration of OLCI is based on in-flight measurements, as was for MERIS, it then describes the methodology and tools to be used during Commissioning. Finally, as in-flight based radiometry implies the need for independent validation, it describes the corresponding methods and tools.

  3. Compact radiometric microwave calibrator

    SciTech Connect

    Fixsen, D. J.; Wollack, E. J.; Kogut, A.; Limon, M.; Mirel, P.; Singal, J.; Fixsen, S. M.

    2006-06-15

    The calibration methods for the ARCADE II instrument are described and the accuracy estimated. The Steelcast coated aluminum cones which comprise the calibrator have a low reflection while maintaining 94% of the absorber volume within 5 mK of the base temperature (modeled). The calibrator demonstrates an absorber with the active part less than one wavelength thick and only marginally larger than the mouth of the largest horn and yet black (less than -40 dB or 0.01% reflection) over five octaves in frequency.

  4. An overview of in-orbit radiometric calibration of typical satellite sensors

    NASA Astrophysics Data System (ADS)

    Zhou, G. Q.; Li, C. Y.; Yue, T.; Jiang, L. J.; Liu, N.; Sun, Y.; Li, M. Y.

    2015-06-01

    This paper reviews the development of in-orbit radiometric calibration methods in the past 40 years. It summarizes the development of in-orbit radiometric calibration technology of typical satellite sensors in the visible/near-infrared bands and the thermal infrared band. Focuses on the visible/near-infrared bands radiometric calibration method including: Lamp calibration and solar radiationbased calibration. Summarizes the calibration technology of Landsat series satellite sensors including MSS, TM, ETM+, OLI, TIRS; SPOT series satellite sensors including HRV, HRS. In addition to the above sensors, there are also summarizing ALI which was equipped on EO-1, IRMSS which was equipped on CBERS series satellite. Comparing the in-orbit radiometric calibration technology of different periods but the same type satellite sensors analyzes the similarities and differences of calibration technology. Meanwhile summarizes the in-orbit radiometric calibration technology in the same periods but different country satellite sensors advantages and disadvantages of calibration technology.

  5. JACIE Radiometric Assessment of QuickBird Multispectral Imagery

    NASA Technical Reports Server (NTRS)

    Pagnutti, Mary; Carver, David; Holekamp, Kara; Knowlton, Kelly; Ryan, Robert; Zanoni, Vicki; Thome, Kurtis; Aaron, David

    2004-01-01

    Radiometric calibration of commercial imaging satellite products is required to ensure that science and application communities can place confidence in the imagery they use and can fully understand its properties. Inaccurate radiometric calibrations can lead to erroneous decisions and invalid conclusions and can limit intercomparisons with other systems. To address this calibration need, the NASA Stennis Space Center (SSC) Earth Science Applications (ESA) directorate,through the Joint Agency for Commercial Imagery Evaluation (JACIE) framework, established a commercial imaging satellite radiometric calibration team consisting of two groups: 1) NASA SSC ESA, supported by South Dakota State University, and 2) the University of Arizona Remote Sensing Group. The two groups determined the absolute radiometric calibration coefficients of the Digital Globe 4-band, 2.4-m QuickBird multispectral product covering the visible through near-infrared spectral region. For a 2-year period beginning in 2002, both groups employed some variant of a reflectance-based vicarious calibration approach, which required ground-based measurements coincident with QuickBird image acquisitions and radiative transfer calculations. The groups chose several study sites throughout the United States that covered nearly the entire dynamic range of the QuickBird sensor. QuickBird at-sensor radiance values were compared with those estimated by the two independent groups to determine the QuickBird sensor's radiometric accuracy. Approximately 20 at-sensor radiance estimates were vicariously determined each year. The estimates were combined to provide a high-precision radiometric gain calibration coefficient. The results of this evaluation provide the user community with an independent assessment of the QuickBird sensor's absolute calibration and stability over the 2-year period. While the techniques and method described reflect those developed at the NASA SSC, the results of both JACIE team groups are

  6. A new rapid method for rockfall energies and distances estimation

    NASA Astrophysics Data System (ADS)

    Giacomini, Anna; Ferrari, Federica; Thoeni, Klaus; Lambert, Cedric

    2016-04-01

    and distances at the base to block and slope features. The validation of the proposed approach was conducted by comparing predictions to experimental data collected in the field and gathered from the scientific literature. The method can be used for both natural and constructed slopes and easily extended to more complicated and articulated slope geometries. The study shows its great potential for a quick qualitative hazard assessment providing indication about impact energy and horizontal distance of the first impact at the base of a rock cliff. Nevertheless, its application cannot substitute a more detailed quantitative analysis required for site-specific design of mitigation measures. Acknowledgements The authors gratefully acknowledge the financial support of the Australian Coal Association Research Program (ACARP). References Dorren, L.K.A. (2003) A review of rockfall mechanics and modelling approaches, Progress in Physical Geography 27(1), 69-87. Agliardi, F., Crosta, G.B., Frattini, P. (2009) Integrating rockfall risk assessment and countermeasure design by 3D modelling techniques. Natural Hazards and Earth System Sciences 9(4), 1059-1073. Ferrari, F., Thoeni, K., Giacomini, A., Lambert, C. (2016) A rapid approach to estimate the rockfall energies and distances at the base of rock cliffs. Georisk, DOI: 10.1080/17499518.2016.1139729.

  7. A rapid method to improve protein detection by indirect ELISA

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The enzyme-linked immunosorbant assay (ELISA) is a rapid, high-throughput, quantitative immunoassay for the selective detection of target antigens. The general principle behind an ELISA is antibody mediated capture and detection of an antigen with a measureable substrate. Numerous incarnations of th...

  8. A RAPID METHOD FOR ESTIMATING LOG P FOR ORGANIC CHEMICALS

    EPA Science Inventory

    The logarithm of the retention time (log RT) of organic chemicals on a permanently bonded (C-18) reverse-phase high-pressure liquid chromatography system is shown to be linearly related to the logarithm of the n-octanol/water partition coefficient (log P). A rapid, inexpensive te...

  9. Statistical Methods for Rapid Aerothermal Analysis and Design Technology

    NASA Technical Reports Server (NTRS)

    Morgan, Carolyn; DePriest, Douglas; Thompson, Richard (Technical Monitor)

    2002-01-01

    The cost and safety goals for NASA's next generation of reusable launch vehicle (RLV) will require that rapid high-fidelity aerothermodynamic design tools be used early in the design cycle. To meet these requirements, it is desirable to establish statistical models that quantify and improve the accuracy, extend the applicability, and enable combined analyses using existing prediction tools. The research work was focused on establishing the suitable mathematical/statistical models for these purposes. It is anticipated that the resulting models can be incorporated into a software tool to provide rapid, variable-fidelity, aerothermal environments to predict heating along an arbitrary trajectory. This work will support development of an integrated design tool to perform automated thermal protection system (TPS) sizing and material selection.

  10. Radiometric Calibration of Osmi Imagery Using Solar Calibration

    NASA Astrophysics Data System (ADS)

    Lee, Dong-Han; Kim, Yong-Seung

    2000-12-01

    OSMI (Ocean Scanning Multi-Spectral Imager) raw image data (Level 0) were acquired and radiometrically corrected. We have applied two methods, using solar & dark calibration data from OSMI sensor and comparing with the SeaWiFS data, to the radiometric correction of OSMI raw image data. First, we could get the values of the gain and the offset for each pixel and each band from comparing the solar & dark calibration data with the solar input radiance values, calculated from the transmittance, BRDF (Bidirectional Reflectance Distribution Function) and the solar incidence angle (¥â,¥è) of OSMI sensor. Applying this calibration data to OSMI raw image data, we got the two odd results, the lower value of the radiometric corrected image data than the expected value, and the Venetian Blind Effect in the radiometric corrected image data. Second, we could get the reasonable results from comparing OSMI raw image data with the SeaWiFS data, and get a new problem of OSMI sensor.

  11. Rapid methods for biochemical testing of anaerobic bacteria.

    PubMed

    Schreckenberger, P C; Blazevic, D J

    1974-11-01

    Rapid biochemical tests for nitrate, indole, gelatin, starch, esculin, and o-nitrophenyl-beta-D-galactopyranoside were performed on 112 strains of anaerobic bacteria. All tests were incubated under aerobic conditions, and results were recorded within 4 h. The tests for nitrate, indole, and starch showed a 95% or greater correlation when compared to the standard biochemical tests. Tests for esculin and gelatin showed an agreement of 86 and 77%, respectively. PathoTec test strips for nitrate, indole, esculin, o-nitrophenyl-beta-D-galactopyranoside, Voges-Proskauer, and urease were also tested and showed encouraging results. PMID:4613268

  12. A rapid method for hydraulic profiling in unconsolidated formations

    USGS Publications Warehouse

    Dietrich, P.; Butler, J.J., Jr.; Faiss, K.

    2008-01-01

    Information on vertical variations in hydraulic conductivity (K) can often shed much light on how a contaminant will move in the subsurface. The direct-push injection logger has been developed to rapidly obtain such information in shallow unconsolidated settings. This small-diameter tool consists of a short screen located just behind a drive point. The tool is advanced into the subsurface while water is injected through the screen to keep it clear. Upon reaching a depth at which information about K is desired, advancement ceases and the injection rate and pressure are measured on the land surface. The rate and pressure values are used in a ratio that serves as a proxy for K. A vertical profile of this ratio can be transformed into a K profile through regressions with K estimates determined using other techniques. The viability of the approach was assessed at an extensively studied field site in eastern Germany. The assessment demonstrated that this tool can rapidly identify zones that may serve as conduits for or barriers to contaminant movement. ?? 2007 The Author(s).

  13. A rapid method for hydraulic profiling in unconsolidated formations.

    PubMed

    Dietrich, Peter; Butler, James J; Faiss, Klaus

    2008-01-01

    Information on vertical variations in hydraulic conductivity (K) can often shed much light on how a contaminant will move in the subsurface. The direct-push injection logger has been developed to rapidly obtain such information in shallow unconsolidated settings. This small-diameter tool consists of a short screen located just behind a drive point. The tool is advanced into the subsurface while water is injected through the screen to keep it clear. Upon reaching a depth at which information about K is desired, advancement ceases and the injection rate and pressure are measured on the land surface. The rate and pressure values are used in a ratio that serves as a proxy for K. A vertical profile of this ratio can be transformed into a K profile through regressions with K estimates determined using other techniques. The viability of the approach was assessed at an extensively studied field site in eastern Germany. The assessment demonstrated that this tool can rapidly identify zones that may serve as conduits for or barriers to contaminant movement. PMID:18307433

  14. A rapid, small-scale sedimentation method to predict breadmaking quality of hard winter wheat

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Breeders and processors are always looking for rapid and accurate methods to evaluate wheat quality. A rapid small-scale hybrid sedimentation method was developed for predicting breadmaking quality of breeders samples by combining the sodium dodecyl-sulfate (SDS) sedimentation method (AACC 56-70) an...

  15. Small satellite radiometric measurement system

    SciTech Connect

    Weber, P.G.

    1992-01-01

    A critical need for the US Global Change Research Program is to provide continuous, well-calibrated radiometric data for the earth`s radiation budget. This paper describes a new, compact, relatively light-weight, adaptable radiometer which will provide both spectrally integrated measurements and data in selected spectral bands. The radiometer design is suitable for use on small satellites, aircraft, or remotely piloted aircraft (RPAs). An example of the implementation of this radiometer on a small satellite is given. Significant benefits derive from simultaneous measurements of specific narrow (in wavelength) spectral features; such data may be obtained by combining LARI with a compact spectrometer on the same platform. Well-chosen satellite orbits allow one to use data from other satellites (e.g. DMSP) to enhance the data product, or to provide superior coverage of specific locations. 23 refs.

  16. Microwave radiometric observations of snowpacks

    NASA Technical Reports Server (NTRS)

    Ulaby, F. T.; Stiles, W. H.

    1980-01-01

    Models for the microwave emission from snowpacks were generated on the basis of radiometric observations made at 10.7 GHz, 37 HGz, and 94 GHz at a test site near Steamboat Springs, Colorado. In addition to conducting measurements on an approximately daily basis over a six week observation period, measurements were made over several diurnal cycles during which the change in snow wetness was tracked by the microwave radiometers. Also, the variation in emissivity with snow water equivalent was examined, as was the sensitivity to changes in snow surface geometry. The microwave emissivity was observed to (1) decrease exponentially with snow water equivalent and (2) increase with snow wetness. Thus, the emission behavior is the reverse of the backscattering behavior observed by the radar. By fitting the models to the measured data, the variation of the optical depth with snow wetness was estimated.

  17. Electrical impedance measurements: rapid method for detecting and monitoring microorganisms.

    PubMed Central

    Cady, P; Dufour, S W; Shaw, J; Kraeger, S J

    1978-01-01

    A conceptually simple and east-to-use technique is described that uses continuous impedance measurements for automated monitoring of microbial growth and metabolism. The method has been applied to a wide range of microorganisms. Optical clarity is not required. The sensitivity and reproducibility of the method are demonstrated. The mechanism whereby microbial growth alters the impedance of the medium is discussed, as well as potential applications of the method to clinical microbiology. Images PMID:348718

  18. Evaluating an alternative method for rapid urinary creatinine determination

    EPA Science Inventory

    Creatinine (CR) is an endogenously-produced chemical routinely assayed in urine specimens to assess kidney function, sample dilution. The industry-standard method for CR determination, known as the kinetic Jaffe (KJ) method, relies on an exponential rate of a colorimetric change,...

  19. RAPID METHODS FOR MEASURING INDICATOR BACTERIA IN BATHING BEACH WATERS

    EPA Science Inventory

    The current methods for measuring the quality of recreational waters were developed in the 1970's and were recommended to the States by EPA in 1986. These methods detect and quantify Escherichia coli and enterococci, two bacteria that are consistently associated with fecal wast...

  20. Rapid method for sampling metals for materials identification

    NASA Technical Reports Server (NTRS)

    Higgins, L. E.

    1971-01-01

    Nondamaging process similar to electrochemical machining is useful in obtaining metal samples from places inaccessible to conventional sampling methods or where methods would be hazardous or contaminating to specimens. Process applies to industries where metals or metal alloys play a vital role.

  1. A radiometric assay for HIV-1 protease

    SciTech Connect

    Hyland, L.J.; Dayton, B.D.; Moore, M.L.; Shu, A.Y.; Heys, J.R.; Meek, T.D. )

    1990-08-01

    A rapid, high-throughput radiometric assay for HIV-1 protease has been developed using ion-exchange chromatography performed in 96-well filtration plates. The assay monitors the activity of the HIV-1 protease on the radiolabeled form of a heptapeptide substrate, (tyrosyl-3,5-3H)Ac-Ser-Gln-Asn-Tyr-Pro-Val-Val-NH2, which is based on the p17-p24 cleavage site found in the viral polyprotein substrate Pr55gag. Specific cleavage of this uncharged heptapeptide substrate by HIV-1 protease releases the anionic product (tyrosyl-3,5-3H)Ac-Ser-Gln-Asn-Tyr, which is retained upon minicolumns of the anion-exchange resin AG1-X8. Protease activity is determined from the recovery of this radiolabeled product following elution with formic acid. This facile and highly sensitive assay may be utilized for steady-state kinetic analysis of the protease, for measurements of enzyme activity during its purification, and as a routine assay for the evaluation of protease inhibitors from natural product or synthetic sources.

  2. RAPID SEPARATION METHOD FOR 237NP AND PU ISOTOPES IN LARGE SOIL SAMPLES

    SciTech Connect

    Maxwell, S.; Culligan, B.; Noyes, G.

    2010-07-26

    A new rapid method for the determination of {sup 237}Np and Pu isotopes in soil and sediment samples has been developed at the Savannah River Site Environmental Lab (Aiken, SC, USA) that can be used for large soil samples. The new soil method utilizes an acid leaching method, iron/titanium hydroxide precipitation, a lanthanum fluoride soil matrix removal step, and a rapid column separation process with TEVA Resin. The large soil matrix is removed easily and rapidly using this two simple precipitations with high chemical recoveries and effective removal of interferences. Vacuum box technology and rapid flow rates are used to reduce analytical time.

  3. A rapid wire-based sampling method for DNA profiling.

    PubMed

    Chen, Tong; Catcheside, David E A; Stephenson, Alice; Hefford, Chris; Kirkbride, K Paul; Burgoyne, Leigh A

    2012-03-01

    This paper reports the results of a commission to develop a field deployable rapid short tandem repeat (STR)-based DNA profiling system to enable discrimination between tissues derived from a small number of individuals. Speed was achieved by truncation of sample preparation and field deployability by use of an Agilent 2100 Bioanalyser(TM). Human blood and tissues were stabbed with heated stainless steel wire and the resulting sample dehydrated with isopropanol prior to direct addition to a PCR. Choice of a polymerase tolerant of tissue residues and cycles of amplification appropriate for the amount of template expected yielded useful profiles with a custom-designed quintuplex primer set suitable for use with the Bioanalyser(TM). Samples stored on wires remained amplifiable for months, allowing their transportation unrefrigerated from remote locations to a laboratory for analysis using AmpFlSTR(®) Profiler Plus(®) without further processing. The field system meets the requirements for discrimination of samples from small sets and retains access to full STR profiling when required. PMID:22211864

  4. A rapid method for the determination of lithium transference numbers

    SciTech Connect

    Zawodzinski, T.A. Jr.; Dai, H.; Sanderson, S.; Davey, J.; Uribe, F.

    1997-05-01

    Lithium ion-conducting polymer electrolytes are of increasing interest for use in lithium-polymer batteries. Lithium transference numbers, the net fraction of current carried by lithium in a cell, are key figures of merit for potential lithium battery electrolytes. The authors describe the Electrophoretic NMR (ENMR) method for the determination of lithium ion transference numbers (T{sub Li}). The work presented is a proof-of-concept of the application of the ENMR method to lithium ion transference measurements for several different lithium salts in gelled electrolytes. The NMR method allows accurate determination of T{sub Li} values, as indicated by the similarity of T{sub Li} in the gelled electrolytes to those in aqueous electrolyte solutions at low salt concentration. Based on calculated tradeoffs of various experimental parameters, they also discuss some conclusions concerning the range of applicability of the method to other electrolytes with lower lithium mobility.

  5. Rapid Methods for the Detection of General Fecal Indicators

    EPA Science Inventory

    Specified that EPA should develop: appropriate and effective indicators for improving detection in a timely manner of pathogens in coastal waters appropriate, accurate, expeditious and cost-effective methods for the timely detection of pathogens in coastal waters

  6. High speed radiometric measurements of IED detonation fireballs

    NASA Astrophysics Data System (ADS)

    Spidell, Matthew T.; Gordon, J. Motos; Pitz, Jeremey; Gross, Kevin C.; Perram, Glen P.

    2010-04-01

    Continuum emission is predominant in fireball spectral phenomena and in some demonstrated cases, fine detail in the temporal evolution of infrared spectral emissions can be used to estimate size and chemical composition of the device. Recent work indicates that a few narrow radiometric bands may reveal forensic information needed for the explosive discrimination and classification problem, representing an essential step in moving from "laboratory" measurements to a rugged, fieldable system. To explore phenomena not observable in previous experiments, a high speed (10μs resolution) radiometer with four channels spanning the infrared spectrum observed the detonation of nine home made explosive (HME) devices in the < 100lb class. Radiometric measurements indicate that the detonation fireball is well approximated as a single temperature blackbody at early time (0 < t <~ 3ms). The effective radius obtained from absolute intensity indicates fireball growth at supersonic velocity during this time. Peak fireball temperatures during this initial detonation range between 3000.3500K. The initial temperature decay with time (t <~ 10ms) can be described by a simple phenomenological model based on radiative cooling. After this rapid decay, temperature exhibits a small, steady increase with time (10 <~ t <~ 50ms) and peaking somewhere between 1000.1500K-likely the result of post-detonation combustion-before subsequent cooling back to ambient conditions . Radius derived from radiometric measurements can be described well (R2 > 0.98) using blast model functional forms, suggesting that energy release could be estimated from single-pixel radiometric detectors. Comparison of radiometer-derived fireball size with FLIR infrared imagery indicate the Planckian intensity size estimates are about a factor of two smaller than the physical extent of the fireball.

  7. Asymptotic and Numerical Methods for Rapidly Rotating Buoyant Flow

    NASA Astrophysics Data System (ADS)

    Grooms, Ian G.

    This thesis documents three investigations carried out in pursuance of a doctoral degree in applied mathematics at the University of Colorado (Boulder). The first investigation concerns the properties of rotating Rayleigh-Benard convection -- thermal convection in a rotating infinite plane layer between two constant-temperature boundaries. It is noted that in certain parameter regimes convective Taylor columns appear which dominate the dynamics, and a semi-analytical model of these is presented. Investigation of the columns and of various other properties of the flow is ongoing. The second investigation concerns the interactions between planetary-scale and mesoscale dynamics in the oceans. Using multiple-scale asymptotics the possible connections between planetary geostrophic and quasigeostrophic dynamics are investigated, and three different systems of coupled equations are derived. Possible use of these equations in conjunction with the method of superparameterization, and extension of the asymptotic methods to the interactions between mesoscale and submesoscale dynamics is ongoing. The third investigation concerns the linear stability properties of semi-implicit methods for the numerical integration of ordinary differential equations, focusing in particular on the linear stability of IMEX (Implicit-Explicit) methods and exponential integrators applied to systems of ordinary differential equations arising in the numerical solution of spatially discretized nonlinear partial differential equations containing both dispersive and dissipative linear terms. While these investigations may seem unrelated at first glance, some reflection shows that they are in fact closely linked. The investigation of rotating convection makes use of single-space, multiple-time-scale asymptotics to deal with dynamics strongly constrained by rotation. Although the context of thermal convection in an infinite layer seems somewhat removed from large-scale ocean dynamics, the asymptotic

  8. A method for rapid acquisition of data from dispersed individuals.

    PubMed

    Fetterolf, Donald E; Michael, Russ

    2002-01-01

    We have developed a data-collection system that we believe has wide applicability in dispersed organizations that have different local information systems infrastructures. A questionnaire was developed using commonly available software tools and was implemented several times across a dispersed network of individuals to rapidly collect, organize, and analyze information with a minimum of secretarial time and administrative cost. A common e-mail database was created identifying all of the medical directors and care management directors in the Blue Cross Blue Shield system. Initial polling of these individuals yielded specific questions of interest, and a final questionnaire was developed. The focus of the project centered on the evaluation of disease state management initiatives within each of the plans and on the ongoing use and future potential for various medical management initiatives. A questionnaire was developed using a Microsoft Excel spreadsheet with the ultimate development of a database in mind. All of the questions, whether single or multiple answers, were mapped from question response sections to a hidden specified range created to import the flat file answer block into a database. Individual cells containing answers to questions were each mapped to a hidden area of the spreadsheet arrayed as a series of rows. As each questionnaire was returned to the central site, data was imported from the hidden range name into a Microsoft Access database. The process of collecting extensive information on a questionnaire-by-questionnaire basis took approximately 20 seconds of time per questionnaire. A final report was ultimately created composed of some 24 pages of detailed information on managed care across the participants, representing some 90% of the member organizations. Secretarial costs were needed only for final transcription of the report. PMID:11941997

  9. Success of Rapid Continuous Thermal Demagnetization When Conventional Methods Failed

    NASA Astrophysics Data System (ADS)

    Coe, R. S.; Le Goff, M.

    2014-12-01

    Conventional stepwise thermal demagnetization of samples spanning a basalt flow erupted during a polarity transition at Steens Mountain, Oregon yielded scattered directions of high-temperature remanence, whereas the results of continuous thermal demagnetization cluster convincingly among the characteristic directions of the next several flows below. The continuous demagnetization was performed using the Triaxe1, a 3-axis vibrating sample magnetometer in which the directions of ~1 cm3 sub-samples were measured repeatedly as temperature increased during heated from 20 to 500-550°C in only 12-13 minutes. The demagnetization trajectories suggest that normal-polarity secondary magnetization, acquired both at room temperature in today's polarity chron and during modest reheating in a normal field during cooling of the overlying flow, was responsible for the failure of conventional thermal demagnetization. Our favored explanation is that alteration during ordinary thermal demagnetization raised the blocking temperature while preserving the direction of the overprint, thereby masking the primary component. The rapid heating (~40°C/min) during continuous demagnetization appears to have been fast enough to demagnetize the normal overprint before this masking could happen. Thermomagnetic cycles exhibit significant irreversibility starting around 300°C, both in air and in argon. Changes in room-temperature hysteresis parameters after heating in air to temperature T also start to change around T=300°C. Titanomagnetite of composition TM65-70, partially oxidized to titanomaghemite, plus a minor low-Ti, oxyexsolved phase are observed in thin section and inferred from thermomagnetic curves. Thus, inversion of secondary titanomaghemite that carries a normal overprint could be the masking mechanism. The failure of AF demagnetization, on the other hand, we attribute to overlapping coercivity spectra of primary and secondary magnetization. 1Le Goff and Gallet, 2004, Earth Planet

  10. Comparison of methods for rapid analysis of quercetin.

    PubMed

    Pardo-Barrela, Jessica; Lago-Crespo, Miguel; Lage-Yusty, María Asunción; López-Hernández, Julia

    2015-03-01

    Quercetin is a polyphenol of growing interest that is present in many foods. In this study, we compared two methods for its determination in samples of drinks made of juice and in dietary supplements, one chromatographic (HPLC) and other spectrofluorimetric (constant-wavelength synchronous spectrofluorimetry). To confirm the identification of the quercetin in the samples an HPLC-PDA-MS/MS system was used. It was concluded that both methods are suitable for dietary supplements and the choice of one or the other depends on the type of sample, time available for the analysis as well as the available resources. For juice beverages only HPLC is suitable. PMID:25488586

  11. DEVELOPMENT OF A RAPID ANALYTICAL METHOD FOR DETERMINING ASBESTOS IN WATER

    EPA Science Inventory

    The development of a rapid analytical method for determining chrysotile asbestos in water that requires substantially less time per analysis than electron microscopy methods is described. Based on the proposition that separation of chrysotile from other waterborne particulate wou...

  12. Development of a rapid detection method for Yellow Dwarf Viruses

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Barley and Cereal yellow dwarf viruses (B/CYDVs), constitute the most economically important group of oat viruses. A multiplex reverse transcription polymerase chain reaction method was developed for the simultaneous detection and discrimination of five B/CYDVs viruses. The protocol uses specific pr...

  13. Gravity modes in rapidly rotating stars. Limits of perturbative methods

    NASA Astrophysics Data System (ADS)

    Ballot, J.; Lignières, F.; Reese, D. R.; Rieutord, M.

    2010-07-01

    Context. CoRoT and Kepler missions are now providing high-quality asteroseismic data for a large number of stars. Among intermediate-mass and massive stars, fast rotators are common objects. Taking the rotation effects into account is needed to correctly understand, identify, and interpret the observed oscillation frequencies of these stars. A classical approach is to consider the rotation as a perturbation. Aims: In this paper, we focus on gravity modes, such as those occurring in γ Doradus, slowly pulsating B (SPB), or Be stars. We aim to define the suitability of perturbative methods. Methods: With the two-dimensional oscillation program (TOP), we performed complete computations of gravity modes - including the Coriolis force, the centrifugal distortion, and compressible effects - in 2D distorted polytropic models of stars. We started with the modes ℓ = 1, n = 1-14, and ℓ = 2-3, n = 1-5, 16-20 of a nonrotating star, and followed these modes by increasing the rotation rate up to 70% of the break-up rotation rate. We then derived perturbative coefficients and determined the domains of validity of the perturbative methods. Results: Second-order perturbative methods are suited to computing low-order, low-degree mode frequencies up to rotation speeds ~100 km s-1 for typical γ Dor stars or ~150 km s-1 for B stars. The domains of validity can be extended by a few tens of km s-1 thanks to the third-order terms. For higher order modes, the domains of validity are noticeably reduced. Moreover, perturbative methods are inefficient for modes with frequencies lower than the Coriolis frequency 2Ω. We interpret this failure as a consequence of a modification in the shape of the resonant cavity that is not taken into account in the perturbative approach.

  14. Ambient methods and apparatus for rapid laser trace constituent analysis

    DOEpatents

    Snyder, Stuart C.; Partin, Judy K.; Grandy, Jon D.; Jeffery, Charles L.

    2002-01-01

    A method and apparatus are disclosed for measuring trace amounts of constituents in samples by using laser induced breakdown spectroscopy and laser induced fluorescence under ambient conditions. The laser induced fluorescence is performed at a selected wavelength corresponding to an absorption state of a selected trace constituent. The intensity value of the emission decay signal which is generated by the trace constituent is compared to calibrated emission intensity decay values to determine the amount of trace constituent present.

  15. Rapid Mapping Method Based on Free Blocks of Surveys

    NASA Astrophysics Data System (ADS)

    Yu, Xianwen; Wang, Huiqing; Wang, Jinling

    2016-06-01

    While producing large-scale larger than 1:2000 maps in cities or towns, the obstruction from buildings leads to difficult and heavy tasks of measuring mapping control points. In order to avoid measuring the mapping control points and shorten the time of fieldwork, in this paper, a quick mapping method is proposed. This method adjusts many free blocks of surveys together, and transforms the points from all free blocks of surveys into the same coordinate system. The entire surveying area is divided into many free blocks, and connection points are set on the boundaries between free blocks. An independent coordinate system of every free block is established via completely free station technology, and the coordinates of the connection points, detail points and control points in every free block in the corresponding independent coordinate systems are obtained based on poly-directional open traverses. Error equations are established based on connection points, which are determined together to obtain the transformation parameters. All points are transformed from the independent coordinate systems to a transitional coordinate system via the transformation parameters. Several control points are then measured by GPS in a geodetic coordinate system. All the points can then be transformed from the transitional coordinate system to the geodetic coordinate system. In this paper, the implementation process and mathematical formulas of the new method are presented in detail, and the formula to estimate the precision of surveys is given. An example has demonstrated that the precision of using the new method could meet large-scale mapping needs.

  16. LANDSAT-4 multispectral scanner (MSS) subsystem radiometric characterization

    NASA Technical Reports Server (NTRS)

    Alford, W. (Editor); Barker, J. (Editor); Clark, B. P.; Dasgupta, R.

    1983-01-01

    The multispectral band scanner (mass) and its spectral characteristics are described and methods are given for relating video digital levels on computer compatible tapes to radiance into the sensor. Topics covered include prelaunch calibration procedures and postlaunch radiometric processng. Examples of current data resident on the MSS image processing system are included. The MSS on LANDSAT 4 is compared with the scanners on earlier LANDSAT satellites.

  17. The Rapid-Heat LAMPellet Method: A Potential Diagnostic Method for Human Urogenital Schistosomiasis

    PubMed Central

    Carranza-Rodríguez, Cristina; Pérez-Arellano, José Luis; Vicente, Belén; López-Abán, Julio; Muro, Antonio

    2015-01-01

    Background Urogenital schistosomiasis due to Schistosoma haematobium is a serious underestimated public health problem affecting 112 million people - particularly in sub-Saharan Africa. Microscopic examination of urine samples to detect parasite eggs still remains as definitive diagnosis. This work was focussed on developing a novel loop-mediated isothermal amplification (LAMP) assay for detection of S. haematobium DNA in human urine samples as a high-throughput, simple, accurate and affordable diagnostic tool to use in diagnosis of urogenital schistosomiasis. Methodology/Principal Findings A LAMP assay targeting a species specific sequence of S. haematobium ribosomal intergenic spacer was designed. The effectiveness of our LAMP was assessed in a number of patients´ urine samples with microscopy confirmed S. haematobium infection. For potentially large-scale application in field conditions, different DNA extraction methods, including a commercial kit, a modified NaOH extraction method and a rapid heating method were tested using small volumes of urine fractions (whole urine, supernatants and pellets). The heating of pellets from clinical samples was the most efficient method to obtain good-quality DNA detectable by LAMP. The detection limit of our LAMP was 1 fg/µL of S. haematobium DNA in urine samples. When testing all patients´ urine samples included in our study, diagnostic parameters for sensitivity and specificity were calculated for LAMP assay, 100% sensitivity (95% CI: 81.32%-100%) and 86.67% specificity (95% CI: 75.40%-94.05%), and also for microscopy detection of eggs in urine samples, 69.23% sensitivity (95% CI: 48.21% -85.63%) and 100% specificity (95% CI: 93.08%-100%). Conclusions/Significance We have developed and evaluated, for the first time, a LAMP assay for detection of S. haematobium DNA in heated pellets from patients´ urine samples using no complicated requirement procedure for DNA extraction. The procedure has been named the Rapid

  18. Rapid new methods for paint collection and lead extraction.

    PubMed

    Gutknecht, William F; Harper, Sharon L; Winstead, Wayne; Sorrell, Kristen; Binstock, David A; Salmons, Cynthia A; Haas, Curtis; McCombs, Michelle; Studabaker, William; Wall, Constance V; Moore, Curtis

    2009-01-01

    Chronic exposure of children to lead can result in permanent physiological impairment. In adults, it can cause irritability, poor muscle coordination, and nerve damage to the sense organs and nerves controlling the body. Surfaces coated with lead-containing paints are potential sources of exposure to lead. In April 2008, the U.S. Environmental Protection Agency (EPA) finalized new requirements that would reduce exposure to lead hazards created by renovation, repair, and painting activities, which disturb lead-based paint. On-site, inexpensive identification of lead-based paint is required. Two steps have been taken to meet this challenge. First, this paper presents a new, highly efficient method for paint collection that is based on the use of a modified wood drill bit. Second, this paper presents a novel, one-step approach for quantitatively grinding and extracting lead from paint samples for subsequent lead determination. This latter method is based on the use of a high-revolutions per minute rotor with stator to break up the paint into approximately 50 micron-size particles. Nitric acid (25%, v/v) is used to extract the lead in <3 minutes. Recoveries are consistently >95% for real-world paints, National Institute of Standards and Technology's standard reference materials, and audit samples from the American Industrial Hygiene Association's Environmental Lead Proficiency Analytical Testing Program. This quantitative extraction procedure, when paired with quantitative paint sample collection and lead determination, may enable the development of a lead paint test kit that will meet the specifications of the final EPA rule. PMID:19137153

  19. Rapid microbiochemical method for presumptive identification of gastroenteritis-associated members of the family Enterobacteriaceae.

    PubMed Central

    Yong, D C; Thompson, J S; Prytula, A

    1985-01-01

    A method for rapid screening of isolates of pathogenic members of the family Enterobacteriaceae is described. Flow charts are used in conjunction with triple sugar iron agar, o-nitrophenyl-beta-D-galactopyranoside-phenylalanine-motility sulfate screening media, oxidase test, and six rapid biochemical tests, namely, lysine decarboxylase, urease, indole, esculin hydrolysis, malonate, and xylose. This scheme is used to provide an inexpensive but rapid presumptive identification of Salmonella, Shigella, Edwardsiella, Aeromonas, Plesiomonas, Vibrio, and Yersinia isolates from stool cultures. PMID:4008622

  20. High Throughput Microfluidic Rapid and Low Cost Prototyping Packaging Methods

    PubMed Central

    Miled, Amine; Sawan, Mohamad

    2013-01-01

    In this work, 3 different packaging and assembly techniques are presented. They can be classified into two categories: one-time use and reusable packaging techniques. The one-time use packaging technique employs UV-based and temperature curing epoxies to connect microtubes to access holes, wire-bonding for integrated circuit connections, and silver epoxy for electrical connections. This method is based on a robust assembly technique that can support relatively high pressure close to 1 psi and does not need any support to strengthen the microfluidic architecture. Reusable packaging techniques consist of PDMS-based microtube interconnectors and anisotropic adhesive films for electrical connections. These devices are more sensitive and fragile. Consequently, Plexiglas support is added to the microfluidic structure to improve the electrical contact when anisotropic adhesive films are used, and also to strengthen the microfluidic architecture. In addition, a micromanipulator is needed to maintain tubes while using a thin PDMS layer to connect them to the access holes. Different PDMS layer thicknesses, ranging from 0.45-3 mm, are tested to compare the best adherence versus injection rates. Applied injection rates are varied from 50-300 μl/hr for 0.45-3 mm PDMS layers, respectively. These techniques are mainly applicable for low-pressure applications. However, they can be extended for high-pressure ones through plasma-oxygen process to permanently seal the PDMS to glass substrates. The main advantage of this technique, besides the fact that it is reusable, consists of keeping the device observable when the microchannel length is very short (in the range of 3 mm or lower). PMID:24378854

  1. Radiometric-microbiologic assay fo vitamin B-6: analysis of plasma samples

    SciTech Connect

    Guilarte, T.R.; McIntyre, P.A.

    1981-11-01

    A radiometric microbiologic assay for the analysis of vitamin B-6 in plasma was developed. The method is based on the measurement of 14CO2 generated from the metabolism of DL-l-14C-valine (L-l-14C-valine) by Kloeckera brevis. The assay is specific for the biologically active forms of the vitamin, that is, pyridoxine, pyridoxal and pyridoxamine, and their respective phosphorylated forms. The biologically inert vitamin B-6 metabolite (4-pyridoxic acid) did not generate a response at concentrations tested. The radiometric technique was shown to be sensitive to the 1 nanogram level. Reproducibility and recovery studies gave good results. Fifteen plasma samples were assayed using the radiometric and turbidimetric techniques. The correlation coefficient was r . 0.98. Turbid material or precipitated debris did not interfere with the radiometric microbiologic assay, thus allowing for simplification of assay procedure.

  2. Experimental Research on Passive Millimeter Wave Radiometric Stealth Technology of Metal Objects

    NASA Astrophysics Data System (ADS)

    Zhang, Guangfeng; Lou, Guowei; Li, Xingguo

    2012-12-01

    Working all day and all weather, a passive millimeter wave radiometer (PMMW) can be widely used in civil and military affairs. It can get some specific information about the material characteristics different from radar and infrared detectors. On basis of the radiometric operating range equation, the radiation cross section and stealth effect of metal objects are presented for the PMMW near-sensing application. The measurement experiments of metal solid models adopts 3 mm band Dicke radiometer with the outdoor calibration system. The sky temperature and other different surface metal objects are also measured as the contrastive experiments. The results show the radiometric temperature contrasts of solid models have remarkable difference in the bare and coated conditions, and the radiometric operating range can decrease to 60.8 %. In addition, the PMMW stealth methods through different surface treatment respectively reduce the radiometric antenna temperature contrast in some degree.

  3. Radiometric and Spatial Characterization of High-Spatial Resolution Sensors

    NASA Technical Reports Server (NTRS)

    Thome, Kurtis; Zanoni, Vicki (Technical Monitor)

    2002-01-01

    The development and improvement of commercial hyperspatial sensors in recent years has increased the breadth of information that can be retrieved from spaceborne and airborne imagery. NASA, through it's Scientific Data Purchases, has successfully provided such data sets to its user community. A key element to the usefulness of these data are an understanding of the radiometric and spatial response quality of the imagery. This proposal seeks funding to examine the absolute radiometric calibration of the Ikonos sensor operated by Space Imaging and the recently-launched Quickbird sensor from DigitalGlobe. In addition, we propose to evaluate the spatial response of the two sensors. The proposed methods rely on well-understood, ground-based targets that have been used by the University of Arizona for more than a decade.

  4. Rapid methods for the detection of foodborne bacterial pathogens: principles, applications, advantages and limitations

    PubMed Central

    Law, Jodi Woan-Fei; Ab Mutalib, Nurul-Syakima; Chan, Kok-Gan; Lee, Learn-Han

    2015-01-01

    The incidence of foodborne diseases has increased over the years and resulted in major public health problem globally. Foodborne pathogens can be found in various foods and it is important to detect foodborne pathogens to provide safe food supply and to prevent foodborne diseases. The conventional methods used to detect foodborne pathogen are time consuming and laborious. Hence, a variety of methods have been developed for rapid detection of foodborne pathogens as it is required in many food analyses. Rapid detection methods can be categorized into nucleic acid-based, biosensor-based and immunological-based methods. This review emphasizes on the principles and application of recent rapid methods for the detection of foodborne bacterial pathogens. Detection methods included are simple polymerase chain reaction (PCR), multiplex PCR, real-time PCR, nucleic acid sequence-based amplification (NASBA), loop-mediated isothermal amplification (LAMP) and oligonucleotide DNA microarray which classified as nucleic acid-based methods; optical, electrochemical and mass-based biosensors which classified as biosensor-based methods; enzyme-linked immunosorbent assay (ELISA) and lateral flow immunoassay which classified as immunological-based methods. In general, rapid detection methods are generally time-efficient, sensitive, specific and labor-saving. The developments of rapid detection methods are vital in prevention and treatment of foodborne diseases. PMID:25628612

  5. Rapid methods for the detection of foodborne bacterial pathogens: principles, applications, advantages and limitations.

    PubMed

    Law, Jodi Woan-Fei; Ab Mutalib, Nurul-Syakima; Chan, Kok-Gan; Lee, Learn-Han

    2014-01-01

    The incidence of foodborne diseases has increased over the years and resulted in major public health problem globally. Foodborne pathogens can be found in various foods and it is important to detect foodborne pathogens to provide safe food supply and to prevent foodborne diseases. The conventional methods used to detect foodborne pathogen are time consuming and laborious. Hence, a variety of methods have been developed for rapid detection of foodborne pathogens as it is required in many food analyses. Rapid detection methods can be categorized into nucleic acid-based, biosensor-based and immunological-based methods. This review emphasizes on the principles and application of recent rapid methods for the detection of foodborne bacterial pathogens. Detection methods included are simple polymerase chain reaction (PCR), multiplex PCR, real-time PCR, nucleic acid sequence-based amplification (NASBA), loop-mediated isothermal amplification (LAMP) and oligonucleotide DNA microarray which classified as nucleic acid-based methods; optical, electrochemical and mass-based biosensors which classified as biosensor-based methods; enzyme-linked immunosorbent assay (ELISA) and lateral flow immunoassay which classified as immunological-based methods. In general, rapid detection methods are generally time-efficient, sensitive, specific and labor-saving. The developments of rapid detection methods are vital in prevention and treatment of foodborne diseases. PMID:25628612

  6. Sentinel-2 radiometric image quality commissioning: first results

    NASA Astrophysics Data System (ADS)

    Lachérade, S.; Lonjou, V.; Farges, M.; Gamet, P.; Marcq, S.; Raynaud, J.-L.; Trémas, T.

    2015-10-01

    In partnership with the European Commission and in the frame of the Copernicus program, the European Space Agency (ESA) is developing the Sentinel-2 optical imaging mission devoted to the operational monitoring of land and coastal areas. The Sentinel-2 mission is based on a satellites constellation deployed in polar sun-synchronous orbit. Sentinel-2 offers a unique combination of global coverage with a wide field of view (290km), a high revisit (5 days with two satellites), a high spatial resolution (10m, 20m and 60m) and multi-spectral imagery (13 spectral bands in visible and shortwave infrared domains). The first satellite, Sentinel-2A, has been launched in June 2015. The Sentinel-2A Commissioning Phase starts immediately after the Launch and Early Orbit Phase and continues until the In-Orbit Commissioning Review which is planned three months after the launch. The Centre National d'Etudes Spatiales (CNES) supports ESA/ESTEC to insure the Calibration/Validation commissioning phase during the first three months in flight. This paper provides first an overview of the Sentinel-2 system and a description of the products delivered by the ground segment associated to the main radiometric specifications to achieve. Then the paper focuses on the preliminary radiometric results obtained during the in-flight commissioning phase. The radiometric methods and calibration sites used in the CNES image quality center to reach the specifications of the sensor are described. A status of the Sentinel-2A radiometric performances at the end of the first three months after the launch is presented. We will particularly address in this paper the results in term of absolute calibration, pixel to pixel relative sensitivity and MTF estimation.

  7. Radiometric ash monitor with iron compensation

    SciTech Connect

    Bachmann, C.; Erken, M.; Fauth, G.; Kern, H.

    1996-12-31

    The recent development of special devices for the measurement of the coal preparation product`s quality makes it possible to design feed forward and feed back quality control systems. For the determination of the ash content in coal very reliable radiometric measuring devices using the dual energy transmission method are available and well tested since several years. While the devices of the fire generation, where the probes were mounted in the center of the belt, determine the composition of only a part of the material, multi channel systems were developed and installed in preparation plants of different German and foreign mines. These analyzers work with three to five pairs of detectors which are placed across the belt to overcome representativity problems at inhomogeneously loaded belts. Another attempt to overcome those problems is the measurement behind an automatic sampler in a bypass. Dual energy ash meters are well developed and available from different companies round the world. Different examples show that some applications give excellent results while other applications show only poor accuracies due to variations in the composition. A new development using radiation with lower energies to determine important ingredients of coal shows an improvement of the ash measurement. Installed behind a sampler, the system offers a representative measurement which is less dependent on variations of the composition. First results will be presented.

  8. Evaluation of the Fully Automated BACTEC MGIT 960 System for Testing Susceptibility of Mycobacterium tuberculosis to Pyrazinamide, Streptomycin, Isoniazid, Rifampin, and Ethambutol and Comparison with the Radiometric BACTEC 460TB Method

    PubMed Central

    Scarparo, Claudio; Ricordi, Paolo; Ruggiero, Giuliana; Piccoli, Paola

    2004-01-01

    The performance of the fully automated BACTEC MGIT 960 (M960) system for the testing of Mycobacterium tuberculosis susceptibility to streptomycin (SM), isoniazid (INH), rifampin (RMP), ethambutol (EMB), and pyrazinamide (PZA) was evaluated with 100 clinical isolates and compared to that of the radiometric BACTEC 460TB (B460) system. The agar proportion method and the B460 system were used as reference methods to resolve the discordant results for SM, INH, RMP, and EMB (a combination known as SIRE) and PZA, respectively. The overall agreements were 96.3% for SIRE and 92% for PZA. For SIRE, a total of 26 discrepancies were found and were resolved in favor of the M960 system in 8 cases and in favor of the B460 system in 18 cases. The M960 system produced 8 very major errors (VME) and 10 major errors (ME), while the B460 system showed 4 VME and 4 ME. No statistically significant differences were found. Both systems exhibited excellent performance, but a higher number of VME was observed with the M960 system at the critical concentrations of EMB and SM. For PZA, a total of eight discrepancies were observed and were resolved in favor of the M960 system in one case and in favor of the B460 system in seven cases; no statistically significant differences were found. The M960 system showed four VME and three ME. The mean times to report overall PZA results and resistant results were 8.2 and 9.8 days, respectively, for the M960 system and 7.4 and 8.1 days, respectively, for the B460 system. Statistically significant differences were found. The mean times to report SIRE results were 8.3 days for the M960 system and 8.2 days for the B460 system. No statistically significant differences were found. Twelve strains tested for SIRE susceptibility and seven strains tested for PZA susceptibility had been reprocessed because of contamination. In conclusion, the M960 system can represent a valid alternative to the B460 for M. tuberculosis susceptibility testing; however, the frequent

  9. A multi-channel radiometric profiler of temperature, humidity and cloud liquid.

    SciTech Connect

    Ware, R.; Carpenter, R.; Guldner, J.; Liljegren, J.; Nehrkorn, T.; Solheim, F.; Vandenberghe, F.; Environmental Research; Radiometrics Corp.; Univ. Corp. for Atmospheric Research; Weather Decision Technologies Inc.; Atmospheric and Environmental Research Inc.; National Center for Atmospheric Research

    2003-07-31

    A microwave radiometer is described that provides continuous thermodynamic (temperature, water vapor, and moisture) soundings during clear and cloudy conditions. The radiometric profiler observes radiation intensity at 12 microwave frequencies, along with zenith infrared and surface meteorological measurements. Historical radiosonde and neural network or regression methods are used for profile retrieval. We compare radiometric, radiosonde, and forecast soundings and evaluate the accuracy of radiometric temperature and water vapor soundings on the basis of statistical comparison with radiosonde soundings. We find that radiometric soundings are equivalent in accuracy to radiosonde soundings when used in numerical weather forecasting. A case study is described that demonstrates improved fog forecasting on the basis of variational assimilation of radiometric soundings. The accuracy of radiometric cloud liquid soundings is evaluated by comparison with cloud liquid sensors carried by radiosondes. Accurate high-resolution three-dimensional water vapor and wind analysis is described on the basis of assimilation of simulated thermodynamic and wind soundings along with GPS slant delays. Examples of mobile thermodynamic and wind profilers are shown. Thermodynamic profiling, particularly when combined with wind profiling and slant GPS, provides continuous atmospheric soundings for improved weather and dispersion forecasting.

  10. Rapid identification of salmonella serotypes with stereo and hyperspectral microscope imaging Methods

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The hyperspectral microscope imaging (HMI) method can reduce detection time within 8 hours including incubation process. The early and rapid detection with this method in conjunction with the high throughput capabilities makes HMI method a prime candidate for implementation for the food industry. Th...

  11. Rapid Identification of Salmonella Serotypes with Stereo and Hyperspectral Microscope Imaging Methods

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The hyperspectral microscope imaging (HMI) method can reduce detection time within 8 hours including incubation process. The early and rapid detection with this method in conjunction with the high throughput capabilities makes HMI method a prime candidate for implementation for the food industry. Th...

  12. A simple and rapid method for the analysis of phenolic compounds in beverages and grains

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A simple, rapid and direct method for detection of phenolics in foods and beverages is needed. The current standard method (Folin-Ciocalteau) indirectly measures the “total phenolics” through the reducing capacity of components of food or beverages. A novel method was developed to quantify polypheno...

  13. Field Evaluation of a Semiautomated Method for Rapid and Simple Analysis of Recreational Water Microbiological Quality

    PubMed Central

    Anglès d'Auriac, Marc B.; Roberts, Hildegarde; Shaw, Terri; Sirevåg, Reidun; Hermansen, Leonila Fajardo; Berg, James D.

    2000-01-01

    An early warning system using a rapid enzymatic semiautomated method suitable for fecal coliform detection in recreational waters within 8 h was developed further and evaluated in this study. This rapid method was compared to the standard method followed in the United Kingdom. We used 1,011 samples originating from 206 different locations in Wales. When we assessed the presence or absence of fecal coliforms, targeting very low levels of contamination, we obtained 83.9% agreement between the rapid method and the lauryl sulfate broth-membrane filtration technique, whereas direct confirmation of the samples processed by the rapid method showed 89.3% agreement. Environmental enzymatic background activity was found to be the main limiting factor for this method. Owing to a specific and integrated handling of the results by the software of the instrument, the percentage of false-positive results (a consequence of enzymatic background) was successfully limited to 2.9% by the direct confirmation evaluation. However, 7.8% false-negative results due to “late-growers” had to be accepted in order to produce results within a working day. At present, the method can be used in a more conservative way to assess the environmental threshold of 100 CFU of fecal coliforms per 100 ml in recreational waters. The implications of our findings with regard to the applicability of rapid enzymatic methods are discussed. PMID:11010890

  14. Azimuthal radiometric temperature measurements of wheat canopies

    NASA Technical Reports Server (NTRS)

    Kimes, D. S.

    1981-01-01

    The effects of azimuthal view angle on the radiometric temperature of wheat canopies at various stages of development are investigated. Measurements of plant height, total leaf area index, green leaf area index and Feeks growth stage together with infrared radiometric temperature measurements at 12 azimuth intervals with respect to solar azimuth and at different solar zenith angles were obtained for four wheat canopies at various heights. Results reveal a difference on the order of 2 C between the temperatures measured at azimuths of 0 and 180 deg under calm wind conditions, which is attributed to the time-dependent transfer of heat between canopy component surfaces. The azimuthal dependence must thus be taken into account in the determination of radiometric temperatures.

  15. Rapid detection of bacterial growth in blood samples by a continuous-monitoring electrical impedance apparatus.

    PubMed Central

    Specter, S; Throm, R; Strauss, R; Friedman, H

    1977-01-01

    A growth detection method utilizing an automated apparatus capable of rapidly detecting bacterial growth by measuring changes of electrical impedance in bacteriological medium was utilized with "mock" blood cultures containing various gram-negative and gram-positive bacteria. Measurement of changes of electrical impedance was found to ba as accurate and comparable for time of growth detection as the radiometric method for detection of the same bacteria using mock blood cultures. In a limited clinical trial the use of the electrical impedance apparatus detected in 1 positive specimen from 40 clinical blood specimens as rapidly as by radiometric measurement. Both methods were considerably faster for detecting bacterial growth as compared with conventional culture methods. The selected species of gram-positive and -negative organisms tested were all detected by the electrical impedance method, including aerobes and anerobes. However, addition of 5% CO2 to the incubation atmosphere enhanced detection of gram-positive organisms. PMID:336642

  16. AIRS radiometric calibration validation for climate research

    NASA Technical Reports Server (NTRS)

    Aumann, Hartmut H.; Pagano, Thomas S.; Elliott, Denis; Gaiser, Steve; Gregorich, Dave; Broberg, Steve

    2005-01-01

    Climate research using data from satellite based radiometers makes extreme demands on the traceability and stability of the radiometric calibration. The selection of a cooled grating array spectrometer for the Atmospheric Infrared Sounder, AIRS, is key, but does not ensured that AIRS data will be of climate quality. Additional design features, plus additional pre-launch testing, and extensive on-orbit calibration subsystem monitoring beyond what would suffice for application of the data to weather forecasting were required to ensure the radiometric data quality required for climate research. Validation that climate data quality are being generated makes use of the sea surface skin temperatures (SST and (obs-calc).

  17. Radiometric calibration and noise estimation of acousto-optic tunable filter hyperspectral imaging systems.

    PubMed

    Katrašnik, Jaka; Pernuš, Franjo; Likar, Boštjan

    2013-05-20

    The accuracy of the radiometric response of acousto-optic tunable filter (AOTF) hyperspectral imaging systems is crucial for obtaining reliable measurements. It is therefore important to know the radiometric response and noise characteristics of the hyperspectral imaging system used. A radiometric model of an AOTF hyperspectral imaging system composed of an imaging sensor radiometric model (CCD, CMOS, and sCMOS) and an AOTF light transmission model is proposed. Using the radiometric model, a method for obtaining the fixed pattern noise (FPN) of the imaging system by displacing and imaging an illuminated reference target is developed. Methods for estimating the temporal noise of the imaging system, using the photon transfer method, and for correcting FPN are also presented. Noise estimation and image restoration methods were tested on an AOTF hyperspectral imaging system. The results indicate that the developed methods can accurately calculate temporal and FPN, and can effectively correct the acquired images. After correction, the signal-to-noise ratio of the acquired images was shown to increase by 26%. PMID:23736239

  18. Method for the rapid synthesis of large quantities of metal oxide nanowires at low temperatures

    DOEpatents

    Sunkara, Mahendra Kumar; Vaddiraju, Sreeram; Mozetic, Miran; Cvelbar, Uros

    2009-09-22

    A process for the rapid synthesis of metal oxide nanoparticles at low temperatures and methods which facilitate the fabrication of long metal oxide nanowires. The method is based on treatment of metals with oxygen plasma. Using oxygen plasma at low temperatures allows for rapid growth unlike other synthesis methods where nanomaterials take a long time to grow. Density of neutral oxygen atoms in plasma is a controlling factor for the yield of nanowires. The oxygen atom density window differs for different materials. By selecting the optimal oxygen atom density for various materials the yield can be maximized for nanowire synthesis of the metal.

  19. Methods for separation/purification utilizing rapidly cycled thermal swing sorption

    DOEpatents

    Tonkovich, Anna Lee Y.; Monzyk, Bruce F.; Wang, Yong; VanderWiel, David P.; Perry, Steven T.; Fitzgerald, Sean P.; Simmons, Wayne W.; McDaniel, Jeffrey S.; Weller, Jr., Albert E.

    2004-11-09

    The present invention provides apparatus and methods for separating fluid components. In preferred embodiments, the apparatus and methods utilize microchannel devices with small distances for heat and mass transfer to achieve rapid cycle times and surprisingly large volumes of fluid components separated in short times using relatively compact hardware.

  20. A rapid method for determining salinomycin and monensin sensitivity in Eimeria tenella

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Standard methods of determining the ionophore sensitivity of Eimeria rely on infecting chickens with an isolate or a mixture of Eimeria spp. oocysts in the presence of different anti-coccidial drugs. The purpose of this study was to develop a rapid in vitro method for assessing salinomycin and mone...

  1. A rapid method to determine sterol, erythrodiol, and uvaol concentrations in olive oil.

    PubMed

    Mathison, Brian; Holstege, Dirk

    2013-05-15

    A rapid, accurate, and efficient method for determining the sterol, uvaol, and erythrodiol concentrations was developed to meet International Olive Council (IOC) certification criteria for extra virgin olive oil (EVOO). The unsaponifiable fraction of the sample (0.2 g) was separated with a diatomaceous earth column, and the sterol and triterpenic dialcohols were isolated with a novel base-activated silica solid-phase extraction (SPE) cartridge cleanup protocol. The improved method and the IOC method provided identical pass/fail results (n = 34) for each of the six sterol and erythrodiol/uvaol IOC criteria used to assess olive oil. This method was validated, and recoveries of stigmasterol (88%) and β-sitosterol (84%) were greater than previously published values obtained using the IOC method. This method requires approximately one-third the time required to complete the IOC method and has great utility for the rapid screening of EVOO to detect adulteration, false labeling, and an inferior product. PMID:23587059

  2. RAPID FUSION METHOD FOR DETERMINATION OF PLUTONIUM ISOTOPES IN LARGE RICE SAMPLES

    SciTech Connect

    Maxwell, S.

    2013-03-01

    A new rapid fusion method for the determination of plutonium in large rice samples has been developed at the Savannah River National Laboratory (Aiken, SC, USA) that can be used to determine very low levels of plutonium isotopes in rice. The recent accident at Fukushima Nuclear Power Plant in March, 2011 reinforces the need to have rapid, reliable radiochemical analyses for radionuclides in environmental and food samples. Public concern regarding foods, particularly foods such as rice in Japan, highlights the need for analytical techniques that will allow very large sample aliquots of rice to be used for analysis so that very low levels of plutonium isotopes may be detected. The new method to determine plutonium isotopes in large rice samples utilizes a furnace ashing step, a rapid sodium hydroxide fusion method, a lanthanum fluoride matrix removal step, and a column separation process with TEVA Resin cartridges. The method can be applied to rice sample aliquots as large as 5 kg. Plutonium isotopes can be determined using alpha spectrometry or inductively-coupled plasma mass spectrometry (ICP-MS). The method showed high chemical recoveries and effective removal of interferences. The rapid fusion technique is a rugged sample digestion method that ensures that any refractory plutonium particles are effectively digested. The MDA for a 5 kg rice sample using alpha spectrometry is 7E-5 mBq g{sup -1}. The method can easily be adapted for use by ICP-MS to allow detection of plutonium isotopic ratios.

  3. Based on Narcissus of radiometric calibration technology

    NASA Astrophysics Data System (ADS)

    Jin, Libing; Tang, Shaofan; Liu, Jianfeng; Peng, Honggang

    2015-08-01

    Thermal radiation is an inherent property of all objects. Generally, it is believed that the body, which temperature is above absolute zero, can keep generating infrared radiation. Infrared remote sensing, using of satellite-borne or airborne sensors, collects infrared information to identify the surface feature and inversion of surface parameters, temperature, etc. In order to get more accurately feature information, quantitative measurement is required. Infrared radiometric calibration is one of the key technologies of quantitative infrared remote sensing. Most high-resolution thermal imaging systems are cooling. For the infrared optical system which is having a cooled detector, there are some special phenomenons. Since the temperature of the detector's photosensitive surface is generally low, which is very different from system temperature, it is a very strong cold radiation source. Narcissus refers to the case that the cooled detector can "see" its own reflecting image, which may affect the image quality of infrared system seriously. But for radiometric calibration of satellite-borne infrared camera, it can sometimes take advantage of the narcissus instead of cold cryogenic radiometric calibration. In this paper, the use of narcissus to carry out radiometric calibration is summarized, and simulation results show the feasibility.

  4. Radiometric considerations for ocean color remote sensors

    NASA Technical Reports Server (NTRS)

    Gordon, Howard R.

    1990-01-01

    A methodology for determination of the effects of radiometric noise on the performance of ocean color sensors is developed and applied to the Coastal Zone Color Scanner on Nimbus 7 and the Moderate Resolution Imaging Spectrometer planned for the Earth Observing System.

  5. Radiometric surface temperature components for row crops

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Land surface temperature is a boundary condition often used in assessing soil moisture status and energy exchange from the soil-vegetation-atmosphere interface. For row crops having incomplete canopy cover, the radiometric surface temperature is a composite of sunlit and shaded vegetation and substr...

  6. Radiometric infrared focal plane array imaging system for thermographic applications

    NASA Technical Reports Server (NTRS)

    Esposito, B. J.; Mccafferty, N.; Brown, R.; Tower, J. R.; Kosonocky, W. F.

    1992-01-01

    This document describes research performed under the Radiometric Infrared Focal Plane Array Imaging System for Thermographic Applications contract. This research investigated the feasibility of using platinum silicide (PtSi) Schottky-barrier infrared focal plane arrays (IR FPAs) for NASA Langley's specific radiometric thermal imaging requirements. The initial goal of this design was to develop a high spatial resolution radiometer with an NETD of 1 percent of the temperature reading over the range of 0 to 250 C. The proposed camera design developed during this study and described in this report provides: (1) high spatial resolution (full-TV resolution); (2) high thermal dynamic range (0 to 250 C); (3) the ability to image rapid, large thermal transients utilizing electronic exposure control (commandable dynamic range of 2,500,000:1 with exposure control latency of 33 ms); (4) high uniformity (0.5 percent nonuniformity after correction); and (5) high thermal resolution (0.1 C at 25 C background and 0.5 C at 250 C background).

  7. Branching Ratios for The Radiometric Calibration of EUNIS-2012

    NASA Technical Reports Server (NTRS)

    Daw, Adrian N.; Bhatia, A. K.; Rabin, Douglas M.

    2012-01-01

    The Extreme Ultraviolet Normal Incidence Spectrograph (EUNIS) sounding rocket instrument is a two-channel imaging spectrograph that observes the solar corona and transition region with high spectral resolution and a rapid cadence made possible by unprecedented sensitivity. The upcoming flight will incorporate a new wavelength channel covering the range 524-630 Angstroms, the previously-flown 300-370 Angstroms channel, and the first flight demonstration of cooled active pixel sensor (APS) arrays. The new 524-630 Angstrom channel incorporates a Toroidal Varied Line Space (TVLS) grating coated with B4C/Ir, providing broad spectral coverage and a wide temperature range of 0.025 to 10 MK. Absolute radiometric calibration of the two channels is being performed using a hollow cathode discharge lamp and NIST-calibrated AXUV-100G photodiode. Laboratory observations of He I 584 Angstroms and He II 304 Angstroms provide absolute radiometric calibrations of the two channels at those two respective wavelengths by using the AXUV photodiode as a transfer standard. The spectral responsivity is being determined by observing line pairs with a common upper state in the spectra of Ne I-III and Ar II-III. Calculations of A-values for the observed branching ratios are in progress.

  8. Scalable Method to Produce Biodegradable Nanoparticles that Rapidly Penetrate Human Mucus

    PubMed Central

    Xu, Qingguo; Boylan, Nicholas J.; Cai, Shutian; Miao, Bolong; Patel, Himatkumar; Hanes, Justin

    2013-01-01

    Mucus typically traps and rapidly removes foreign particles from the airways, gastrointestinal tract, nasopharynx, female reproductive tract and the surface of the eye. Nanoparticles capable of rapid penetration through mucus can potentially avoid rapid clearance, and open significant opportunities for controlled drug delivery at mucosal surfaces. Here, we report an industrially scalable emulsification method to produce biodegradable mucus-penetrating particles (MPP). The emulsification of diblock copolymers of poly(lactic-co-glycolic acid) and polyethylene glycol (PLGA-PEG) using low molecular weight (MW) emulsifiers forms dense brush PEG coatings on nanoparticles that allow rapid nanoparticle penetration through fresh undiluted human mucus. In comparison, conventional high MW emulsifiers, such as polyvinyl alcohol (PVA), interrupts the PEG coating on nanoparticles, resulting in their immobilization in mucus owing to adhesive interactions with mucus mesh elements. PLGA-PEG nanoparticles with a wide range of PEG MW (1, 2, 5, and 10 kDa), prepared by the emulsification method using low MW emulsifiers, all rapidly penetrated mucus. A range of drugs, from hydrophobic small molecules to hydrohilic large biologics, can be efficiently loaded into biodegradable MPP using the method described. This readily scalable method should facilitate the production of MPP products for mucosal drug delivery, as well as potentially longer-circulating particles following intravenous administration. PMID:23751567

  9. Radiometric terrain correction of SPOT5 image

    NASA Astrophysics Data System (ADS)

    Feng, Xiuli; Zhang, Feng; Wang, Ke

    2007-06-01

    Remote sensing SPOT5 images have been widely applied to the surveying of agriculture and forest resources and to the monitoring of ecology environment of mountain areas. However, the accuracy of land-cover classification of mountain areas is often influenced by the topographical shadow effect. Radiometric terrain correction is important for this kind of application. In this study, a radiometric terrain correction model which based on the rationale of moment matching was made in ERDAS IMAGINE by using the Spatial Modeler Language. Lanxi city in China as the study area, a SPOT5 multispectral image with the spatial resolution of 10 m of that mountain area was corrected by the model. Furthermore, in order to present the advantage of this new model in radiometric terrain correction of remote sensing SPOT5 image, the traditional C correction approach was also applied to the same area to see its difference with the result of the radiometric terrain correction model. The results show that the C correction approach keeps the overall statistical characteristics of spectral bands. The mean and the standard deviation value of the corrected image are the same as original ones. However, the standard deviation value became smaller by using the radiometric terrain correction model and the mean value changed accordingly. The reason of these changes is that before the correction, the histogram of the original image is represented as the 'plus-skewness distribution' due to the relief-caused shade effect, after the correction of the model, the histogram of the image is represented as the normal distribution and the shade effect of the relief has been removed. But as for the result of the traditional C approach, the skewness of the histogram remains the same after the correction. Besides, some portions of the mountain area have been over-corrected. So in my study area, the C correction approach can't remove the shade effect of the relief ideally. The results show that the radiometric

  10. The Eurosdr Project "RADIOMETRIC Aspects of Digital Photogrammetric IMAGES" - Results of the Empirical Phase

    NASA Astrophysics Data System (ADS)

    Honkavaara, E.; Arbiol, R.; Markelin, L.; Martínez, L.; Bovet, S.; Bredif, M.; Chandelier, L.; Heikkinen, V.; Korpela, I.; Lelegard, L.; Pérez, F.; Schläpfer, D.; Tokola, T.

    2011-09-01

    This article presents the empirical research carried out in the context of the multi-site EuroSDR project "Radiometric aspects of digital photogrammetric images" and provides highlights of the results. The investigations have considered the vicarious radiometric and spatial resolution validation and calibration of the sensor system, radiometric processing of the image blocks either by performing relative radiometric block equalization or into absolutely reflectance calibrated products, and finally aspects of practical applications on NDVI layer generation and tree species classification. The data sets were provided by Leica Geosystems ADS40 and Intergraph DMC and the participants represented stakeholders in National Mapping Authorities, software development and research. The investigations proved the stability and quality of evaluated imaging systems with respect to radiometry and optical system. The first new-generation methods for reflectance calibration and equalization of photogrammetric image block data provided promising accuracy and were also functional from the productivity and usability points of view. The reflectance calibration methods provided up to 5% accuracy without any ground reference. Application oriented results indicated that automatic interpretation methods will benefit from the optimal use of radiometrically accurate multi-view photogrammetric imagery.

  11. Commercially Available Rapid Methods for Detection of Selected Food-borne Pathogens.

    PubMed

    Valderrama, Wladir B; Dudley, Edward G; Doores, Stephanie; Cutter, Catherine N

    2016-07-01

    Generally, the enumeration and isolation of food-borne pathogens is performed using culture-dependent methods. These methods are sensitive, inexpensive, and provide both qualitative and quantitative assessment of the microorganisms present in a sample, but these are time-consuming. For this reason, researchers are developing new techniques that allow detection of food pathogens in shorter period of time. This review identifies commercially available methods for rapid detection and quantification of Listeria monocytogenes, Salmonella spp., Staphylococcus aureus, and Shiga toxin-producing Escherichia coli in food samples. Three categories are discussed: immunologically based methods, nucleic acid-based assays, and biosensors. This review describes the basic mechanism and capabilities of each method, discusses the difficulties of choosing the most convenient method, and provides an overview of the future challenges for the technology for rapid detection of microorganisms. PMID:25749054

  12. Rapid high temperature field test method for evaluation of geothermal calcite scale inhibitors

    SciTech Connect

    Asperger, R.G.

    1982-08-01

    A test method is described which allows the rapid field testing of calcite scale inhibitors in high- temperature geothermal brines. Five commercial formulations, chosen on the basis of laboratory screening tests, were tested in brines with low total dissolved solids at ca 500 F. Four were found to be effective; of these, 2 were found to be capable of removing recently deposited scale. One chemical was tested in the full-flow brine line for 6 wks. It was shown to stop a severe surface scaling problem at the well's control valve, thus proving the viability of the rapid test method. (12 refs.)

  13. Rapid methods of determining cooling rates of iron and stony iron meteorites

    USGS Publications Warehouse

    Short, J.M.; Goldstein, J.I.

    1967-01-01

    Two rapid and simple methods have been developed for determining the approximate cooling rates of iron and stony-iron meteorites in which kamacite formed by diffusion-controlled growth along planar fronts. The first method requires only measurements of the mean kamacite bandwidth and the bulk nickel content. The second method requires the determination of the nickel composition near the taenite-kamacite interface with an electron microprobe.

  14. Radiometric calibration to consider in quantitative clinical fluorescence imaging measurements

    NASA Astrophysics Data System (ADS)

    Litorja, M.; Urbas, A.; Zong, Y.

    2015-03-01

    The fluorescent light detected by a clinical imager is assumed to be proportional only to the amount of fluorescent substance present in the sample and the level of excitation. Unfortunately, there are many factors that can add or subtract to the light signal directly attributable to the desired fluorescence emission, especially with fluorescence from inside the body imaged remotely. The quantification of fluorescence emission is feasible by calibrating the imager using international system of units (SI)-traceable physical and material calibration artifacts such that the detector's digital numbers (DN) can be converted to radiometric units. Here we discuss three calibration methods for quantitative clinical fluorescence imaging systems.

  15. Radiometric calibration of Landsat Thematic Mapper multispectral images

    USGS Publications Warehouse

    Chavez, P.S., Jr.

    1989-01-01

    A main problem encountered in radiometric calibration of satellite image data is correcting for atmospheric effects. Without this correction, an image digital number (DN) cannot be converted to a surface reflectance value. In this paper the accuracy of a calibration procedure, which includes a correction for atmospheric scattering, is tested. Two simple methods, a stand-alone and an in situ sky radiance measurement technique, were used to derive the HAZE DN values for each of the six reflectance Thematic Mapper (TM) bands. The DNs of two Landsat TM images of Phoenix, Arizona were converted to surface reflectances. -from Author

  16. Euthanasia Method for Mice in Rapid Time-Course Pulmonary Pharmacokinetic Studies

    PubMed Central

    Schoell, Adam R; Heyde, Bruce R; Weir, Dana E; Chiang, Po-Chang; Hu, Yiding; Tung, David K

    2009-01-01

    To develop a means of euthanasia to support rapid time-course pharmacokinetic studies in mice, we compared retroorbital and intravenous lateral tail vein injection of ketamine–xylazine with regard to preparation time, utility, tissue distribution, and time to onset of euthanasia. Tissue distribution and time to onset of euthanasia did not differ between administration methods. However, retroorbital injection could be performed more rapidly than intravenous injection and was considered to be a technically simple and superior alternative for mouse euthanasia. Retroorbital ketamine–xylazine, CO2 gas, and intraperitoneal pentobarbital then were compared as euthanasia agents in a rapid time-point pharmacokinetic study. Retroorbital ketamine–xylazine was the most efficient and consistent of the 3 methods, with an average time to death of approximately 5 s after injection. In addition, euthanasia by retroorbital ketamine–xylazine enabled accurate sample collection at closely spaced time points and satisfied established criteria for acceptable euthanasia technique. PMID:19807971

  17. Euthanasia method for mice in rapid time-course pulmonary pharmacokinetic studies.

    PubMed

    Schoell, Adam R; Heyde, Bruce R; Weir, Dana E; Chiang, Po-Chang; Hu, Yiding; Tung, David K

    2009-09-01

    To develop a means of euthanasia to support rapid time-course pharmacokinetic studies in mice, we compared retroorbital and intravenous lateral tail vein injection of ketamine-xylazine with regard to preparation time, utility, tissue distribution, and time to onset of euthanasia. Tissue distribution and time to onset of euthanasia did not differ between administration methods. However, retroorbital injection could be performed more rapidly than intravenous injection and was considered to be a technically simple and superior alternative for mouse euthanasia. Retroorbital ketamine-xylazine, CO(2) gas, and intraperitoneal pentobarbital then were compared as euthanasia agents in a rapid time-point pharmacokinetic study. Retroorbital ketamine-xylazine was the most efficient and consistent of the 3 methods, with an average time to death of approximately 5 s after injection. In addition, euthanasia by retroorbital ketamine-xylazine enabled accurate sample collection at closely spaced time points and satisfied established criteria for acceptable euthanasia technique. PMID:19807971

  18. A rapid and specific HPLC-electrochemical method for the determination of endogenous 5-methyltetrahydrofolic acid in plasma using solid phase sample preparation with internal standardization.

    PubMed

    Lucock, M D; Hartley, R; Smithells, R W

    1989-03-01

    A rapid and specific HPLC-electrochemical method for determining endogenous 5-methyltetrahydrofolic acid (5MeTHF) in plasma is described. Quantitative solid phase extraction of 5MeTHF and internal standard, beta-hydroxyethyltheophylline, was carried out using proprietary phenyl bonded-silica columns (Bond Elut Phenyl cartridges, 1.0 mL capacity). Chromatographic separation was achieved using a mobile phase consisting of 15% (v/v) methanol in 0.05 M KH2PO4, pH 3.5 at a flow rate of 2.0 mL/min in conjunction with a Waters Assoc. radially compressed Nova-Pak phenyl column (10 cm x 8 mm, 4 microns bonded silica). The internal standard was measured by UV detection at 254 nm. A Bioanalytical Systems Inc. LC-17 glassy carbon oxidative flow cell with a potential held at +0.35 V vs Ag/AgCl using the LC-4A amperometric controller allowed levels of 1-2 ng/mL 5MeTHF to be measured in 500 microL of plasma. Daily appraisal of the ratio produced by authentic materials clearly demonstrated that quantitation using dual detection was not subject to problems of differential response. Inter-day variation of the differential detector response is cited. Comparison of the Lactobacillus casei bioassay with HPLC demonstrates good agreement between methods but at the same time highlights the drawback of using such non-specific methods to measure samples where more than one folylmonoglutamate may be present. Antoxidant free storage for three months at -70 degrees C in darkness resulted in no deterioration of 5MeTHF. A comparison of the means and range of values for plasma folate obtained using HPLC, L. casei bioassay and the radiometric binding assay is reported. PMID:2736319

  19. Rapid assessment method for prevalence and intensity of Loa loa infection.

    PubMed Central

    Takougang, Innocent; Meremikwu, Martin; Wandji, Samuel; Yenshu, Emmanuel V.; Aripko, Ben; Lamlenn, Samson B.; Eka, Braide L.; Enyong, Peter; Meli, Jean; Kale, Oladele; Remme, Jan H.

    2002-01-01

    OBJECTIVE: To assess the validity of observations on eye worm and Calabar swellings for the rapid assessment of the prevalence and intensity of loiasis at the community level. METHOD: A total of 12895 individuals over the age of 15 years living in 102 communities in Cameroon and Nigeria took part in the study. A standardized questionnaire was administered to participants from whom finger-prick blood samples were collected and examined for Loa loa microfilariae. Rapid assessments of the prevalence and intensity of loiasis were made on the basis of a history of eye worm or Calabar swellings. FINDINGS: There was a strong correlation between the indices of the rapid assessment procedures and the parasitological indices of L. loa endemicity. The rapid assessment indices were effective in diagnosing high-risk communities (sensitivity 94-100%; specificity 66-92%). The highest sensitivity (100%) and specificity (92%) were obtained with a rapid assessment procedure based on a history of eye worm lasting 1-7 days together with confirmation by the guided recognition of a photograph of adult L. loa in the eye. CONCLUSION: Rapid assessment of the prevalence and intensity of loiasis at the community level can be achieved using a procedure based on the history of eye worm lasting 1-7 days together with confirmation by the guided recognition of a photograph of an adult L. loa in the eye. PMID:12481206

  20. A Rapid Method for BrdU Immunostaining in Bovine Mammary Cryosections that Retains RNA Quality

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A rapid method of 5-bromo-2’-deoxyuridine (BrdU) immunostaining was developed in cryosections of bovine mammary tissue, while preserving RNA quality of the stained section. BrdU is a thymidine analog that is incorporated into DNA of proliferating cells and thus serves as a proliferation marker. Im...

  1. A COMPARISON OF TWO RAPID BIOLOGICAL ASSESSMENT SAMPLING METHODS FOR MACROINVERTEBRATES

    EPA Science Inventory

    In 2003, the Office of Research and Developments (ORD's) National Exposure Research Laboratory initiated a collaborative research effort with U.S. EPA Region 3 to conduct a study comparing two rapid biological assessment methods for collecting stream macroinvertebrates. One metho...

  2. A RAPID METHOD FOR PRODUCTION OF HIGH NUMBERS OF PURIFIED CRYPTOSPORIDIUM PARVUM OOCYSTS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Most procedures that have been described for purifying Cryptosporidium parvum oocysts are designed to either identify the parasites in clinical specimens or isolate oocysts from a small volume of feces from infected animals. The present study describes a rapid method for purifying high numbers of C...

  3. A simple, rapid and inexpensive screening method for the identification of Pythium insidiosum.

    PubMed

    Tondolo, Juliana Simoni Moraes; Loreto, Erico Silva; Denardi, Laura Bedin; Mario, Débora Alves Nunes; Alves, Sydney Hartz; Santurio, Janio Morais

    2013-04-01

    Growth of Pythium insidiosum mycelia around minocycline disks (30μg) did not occur within 7days of incubation at 35°C when the isolates were grown on Sabouraud, corn meal, Muller-Hinton or RPMI agar. This technique offers a simple and rapid method for the differentiation of P. insidiosum from true filamentous fungi. PMID:23419825

  4. RAPID AND PRECISE METHOD FOR MEASURING STABLE CARBON ISOTOPE RATIOS OF DISSOLVED INORGANIC CARBON

    EPA Science Inventory

    We describe a method for rapid preparation, concentration and stable isotopic analysis of dissolved inorganic carbon (d13C-DIC). Liberation of CO2 was accomplished by placing 100 ?l phosphoric acid and 0.9 ml water in an evacuated 1.7-ml gas chromatography (GC) injection vial. Fo...

  5. Collision-induced fragmentation accurate mass spectrometric analysis methods to rapidly characterize phytochemicals in plant extracts

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The rapid advances in analytical chromatography equipment have made the reliable and reproducible measurement of a wide range of plant chemical components possible. Full chemical characterization of a given plant material is possible with the new mass spectrometers currently available. New methods a...

  6. Rapid and simple method for serotyping of staphylocoagulase using polystyrene latex particles.

    PubMed

    Kouguchi, Yoshihiro; Fujiwara, Takako; Teramoto, Miki

    2009-01-01

    The serotyping of staphylocoagulase is widely used in Japan. However, the conventional immunoassay based on neutralization of the antisera is so laborious and time-consuming that it is not widely used in the other countries. In order to overcome these drawbacks we developed a novel staphylocoagulase serotyping method based on a microplate format using polystyrene latex particles. Addition of latex particles promotes the formation of fibrin complexes, which represents a more rapidly and easily detected endpoint. For 83 strains, 90% were classified into serotypes within 3 h, and there was no discrepancy in the results between our method and the conventional method. These results indicate that the present microplate method is rapid, simple, and interpretable. PMID:20528093

  7. Rapid HPLC-MS method for the simultaneous determination of tea catechins and folates.

    PubMed

    Araya-Farias, Monica; Gaudreau, Alain; Rozoy, Elodie; Bazinet, Laurent

    2014-05-14

    An effective and rapid HPLC-MS method for the simultaneous separation of the eight most abundant tea catechins, gallic acid, and caffeine was developed. These compounds were rapidly separated within 9 min by a linear gradient elution using a Zorbax SB-C18 packed with sub 2 μm particles. This methodology did not require preparative and semipreparative HPLC steps. In fact, diluted tea samples can be easily analyzed using HPLC-MS as described in this study. The use of mass spectrometry detection for quantification of catechins ensured a higher specificity of the method. The percent relative standard deviation was generally lower than 4 and 7% for most of the compounds tested in tea drinks and tea extracts, respectively. Furthermore, the method provided excellent resolution for folate determination alone or in combination with catechins. To date, no HPLC method able to discriminate catechins and folates in a quick analysis has been reported in the literature. PMID:24734959

  8. Apparatus and method for rapid separation and detection of hydrocarbon fractions in a fluid stream

    SciTech Connect

    Sluder, Charles S.; Storey, John M.; Lewis, Sr., Samuel A.

    2013-01-22

    An apparatus and method for rapid fractionation of hydrocarbon phases in a sample fluid stream are disclosed. Examples of the disclosed apparatus and method include an assembly of elements in fluid communication with one another including one or more valves and at least one sorbent chamber for removing certain classifications of hydrocarbons and detecting the remaining fractions using a detector. The respective ratios of hydrocarbons are determined by comparison with a non separated fluid stream.

  9. Rapid Method for Enumeration of Viable Legionella pneumophila and Other Legionella spp. in Water

    PubMed Central

    Delgado-Viscogliosi, Pilar; Simonart, Tristan; Parent, Virginie; Marchand, Grégory; Dobbelaere, Marie; Pierlot, Eric; Pierzo, Véronique; Menard-Szczebara, Florence; Gaudard-Ferveur, Elisabeth; Delabre, Karine; Delattre, Jean Marie

    2005-01-01

    A sensitive and specific method has been developed to enumerate viable L. pneumophila and other Legionella spp. in water by epifluorescence microscopy in a short period of time (a few hours). This method allows the quantification of L. pneumophila or other Legionella spp. as well as the discrimination between viable and nonviable Legionella. It simultaneously combines the specific detection of Legionella cells using antibodies and a bacterial viability marker (ChemChrome V6), the enumeration being achieved by epifluorescence microscopy. The performance of this immunological double-staining (IDS) method was investigated in 38 natural filterable water samples from different aquatic sources, and the viable Legionella counts were compared with those obtained by the standard culture method. The recovery rate of the IDS method is similar to, or higher than, that of the conventional culture method. Under our experimental conditions, the limit of detection of the IDS method was <176 Legionella cells per liter. The examination of several samples in duplicates for the presence of L. pneumophila and other Legionella spp. indicated that the IDS method exhibits an excellent intralaboratory reproducibility, better than that of the standard culture method. This immunological approach allows rapid measurements in emergency situations, such as monitoring the efficacy of disinfection shock treatments. Although its field of application is as yet limited to filterable waters, the double-staining method may be an interesting alternative (not equivalent) to the conventional standard culture methods for enumerating viable Legionella when rapid detection is required. PMID:16000824

  10. Application of a rapid screening method to detect irradiated meat in Brazil

    NASA Astrophysics Data System (ADS)

    Villavicencio, A. L. C. H. A. L. C. H.; Mancini-Filho, J. J.; Delincée, H.

    2000-03-01

    Based on the enormous potential for food irradiation in Brazil, and to ensure free consumer choice, there is a need to find a convenient and rapid method for detection of irradiated food. Since treatment with ionising radiation causes DNA fragmentation, the analysis of DNA damage might be promising. In this paper, the DNA Comet Assay was used to identify exotic meat (boar, jacaré and capybara), irradiated with 60Co gamma rays. The applied radiation doses were 0, 1.5, 3.0 and 4.5 kGy. Analysis of the DNA migration enabled a rapid identification of the radiation treatment.

  11. Radiometric calibration of digital cameras using Gaussian processes

    NASA Astrophysics Data System (ADS)

    Schall, Martin; Grunwald, Michael; Umlauf, Georg; Franz, Matthias O.

    2015-05-01

    Digital cameras are subject to physical, electronic and optic effects that result in errors and noise in the image. These effects include for example a temperature dependent dark current, read noise, optical vignetting or different sensitivities of individual pixels. The task of a radiometric calibration is to reduce these errors in the image and thus improve the quality of the overall application. In this work we present an algorithm for radiometric calibration based on Gaussian processes. Gaussian processes are a regression method widely used in machine learning that is particularly useful in our context. Then Gaussian process regression is used to learn a temperature and exposure time dependent mapping from observed gray-scale values to true light intensities for each pixel. Regression models based on the characteristics of single pixels suffer from excessively high runtime and thus are unsuitable for many practical applications. In contrast, a single regression model for an entire image with high spatial resolution leads to a low quality radiometric calibration, which also limits its practical use. The proposed algorithm is predicated on a partitioning of the pixels such that each pixel partition can be represented by one single regression model without quality loss. Partitioning is done by extracting features from the characteristic of each pixel and using them for lexicographic sorting. Splitting the sorted data into partitions with equal size yields the final partitions, each of which is represented by the partition centers. An individual Gaussian process regression and model selection is done for each partition. Calibration is performed by interpolating the gray-scale value of each pixel with the regression model of the respective partition. The experimental comparison of the proposed approach to classical flat field calibration shows a consistently higher reconstruction quality for the same overall number of calibration frames.

  12. Validation of rapid assessment methods to determine streamflow duration classes in the Pacific Northwest, USA.

    PubMed

    Nadeau, Tracie-Lynn; Leibowitz, Scott G; Wigington, Parker J; Ebersole, Joseph L; Fritz, Ken M; Coulombe, Robert A; Comeleo, Randy L; Blocksom, Karen A

    2015-07-01

    United States Supreme Court rulings have created uncertainty regarding U.S. Clean Water Act (CWA) authority over certain waters, and established new data and analytical requirements for determining CWA jurisdiction. Thus, rapid assessment methods are needed that can differentiate between ephemeral, intermittent, and perennial streams. We report on the validation of several methods. The first (Interim Method) was developed through best professional judgment (BPJ); an alternative (Revised Method) resulted from statistical analysis. We tested the Interim Method on 178 study reaches in Oregon, and constructed the Revised Method based on statistical analysis of the Oregon data. Next, we evaluated the regional applicability of the methods on 86 study reaches across a variety of hydrologic landscapes in Washington and Idaho. During the second phase, we also compared the Revised Method with a similar approach (Combined Method) based on combined field data from Oregon, Washington, and Idaho. We further compared field-based methods with a GIS-based approach (GIS Method) that used the National Hydrography Dataset and a synthetic stream network. Evaluations of all methods compared results with actual streamflow duration classes. The Revised Method correctly determined known streamflow duration 83.9% of the time, versus 62.3% accuracy of the Interim Method and 43.6% accuracy for the GIS-based approach. The Combined Method did not significantly outperform the Revised Method. Analysis showed biological indicators most accurately discriminate streamflow duration classes. While BPJ established a testable hypothesis, this study illustrates the importance of quantitative field testing of rapid assessment methods. Results support a consistent method applicable across the Pacific Northwest. PMID:25931296

  13. Validation of Rapid Assessment Methods to Determine Streamflow Duration Classes in the Pacific Northwest, USA

    NASA Astrophysics Data System (ADS)

    Nadeau, Tracie-Lynn; Leibowitz, Scott G.; Wigington, Parker J.; Ebersole, Joseph L.; Fritz, Ken M.; Coulombe, Robert A.; Comeleo, Randy L.; Blocksom, Karen A.

    2015-07-01

    United States Supreme Court rulings have created uncertainty regarding U.S. Clean Water Act (CWA) authority over certain waters, and established new data and analytical requirements for determining CWA jurisdiction. Thus, rapid assessment methods are needed that can differentiate between ephemeral, intermittent, and perennial streams. We report on the validation of several methods. The first (Interim Method) was developed through best professional judgment (BPJ); an alternative (Revised Method) resulted from statistical analysis. We tested the Interim Method on 178 study reaches in Oregon, and constructed the Revised Method based on statistical analysis of the Oregon data. Next, we evaluated the regional applicability of the methods on 86 study reaches across a variety of hydrologic landscapes in Washington and Idaho. During the second phase, we also compared the Revised Method with a similar approach (Combined Method) based on combined field data from Oregon, Washington, and Idaho. We further compared field-based methods with a GIS-based approach (GIS Method) that used the National Hydrography Dataset and a synthetic stream network. Evaluations of all methods compared results with actual streamflow duration classes. The Revised Method correctly determined known streamflow duration 83.9 % of the time, versus 62.3 % accuracy of the Interim Method and 43.6 % accuracy for the GIS-based approach. The Combined Method did not significantly outperform the Revised Method. Analysis showed biological indicators most accurately discriminate streamflow duration classes. While BPJ established a testable hypothesis, this study illustrates the importance of quantitative field testing of rapid assessment methods. Results support a consistent method applicable across the Pacific Northwest.

  14. RNASwift: A rapid, versatile RNA extraction method free from phenol and chloroform.

    PubMed

    Nwokeoji, Alison O; Kilby, Peter M; Portwood, David E; Dickman, Mark J

    2016-11-01

    RNASwift is an inexpensive, versatile method for the rapid extraction of RNA. Existing RNA extraction methods typically use hazardous chemicals including phenol, chloroform and formamide which are often difficult to completely remove from the extracted RNA. RNASwift uses sodium chloride and sodium dodecyl sulphate to lyse the cells and isolate the RNA from the abundant cellular components in conjunction with solid phase extraction or isopropanol precipitation to rapidly purify the RNA. Moreover, the purified RNA is directly compatible with downstream analysis. Using spectrophotometry in conjunction with ion pair reverse phase chromatography to analyse the extracted RNA, we show that RNASwift extracts and purifies RNA of higher quality and purity in comparison to alternative RNA extraction methods. The RNASwift method yields approximately 25 μg of RNA from only 10(8)Escherichia coli cells. Furthermore, RNASwift is versatile; the same simple reagents can be used to rapidly extract RNA from a variety of different cells including bacterial, yeast and mammalian cells. In addition to the extraction of total RNA, the RNASwift method can also be used to extract double stranded RNA from genetically modified E. coli in higher yields compared to alternative methods. PMID:27495141

  15. Rapid quantitative pharmacodynamic imaging by a novel method: theory, simulation testing and proof of principle.

    PubMed

    Black, Kevin J; Koller, Jonathan M; Miller, Brad D

    2013-01-01

    Pharmacological challenge imaging has mapped, but rarely quantified, the sensitivity of a biological system to a given drug. We describe a novel method called rapid quantitative pharmacodynamic imaging. This method combines pharmacokinetic-pharmacodynamic modeling, repeated small doses of a challenge drug over a short time scale, and functional imaging to rapidly provide quantitative estimates of drug sensitivity including EC 50 (the concentration of drug that produces half the maximum possible effect). We first test the method with simulated data, assuming a typical sigmoidal dose-response curve and assuming imperfect imaging that includes artifactual baseline signal drift and random error. With these few assumptions, rapid quantitative pharmacodynamic imaging reliably estimates EC 50 from the simulated data, except when noise overwhelms the drug effect or when the effect occurs only at high doses. In preliminary fMRI studies of primate brain using a dopamine agonist, the observed noise level is modest compared with observed drug effects, and a quantitative EC 50 can be obtained from some regional time-signal curves. Taken together, these results suggest that research and clinical applications for rapid quantitative pharmacodynamic imaging are realistic. PMID:23940831

  16. Cellufine sulfate column chromatography as a simple, rapid, and effective method to purify dengue virus.

    PubMed

    Kanlaya, Rattiyaporn; Thongboonkerd, Visith

    2016-08-01

    Conventional method to purify/concentrate dengue virus (DENV) is time-consuming with low virus recovery yield. Herein, we applied cellufine sulfate column chromatography to purify/concentrate DENV based on the mimicry between heparan sulfate and DENV envelope protein. Comparative analysis demonstrated that this new method offered higher purity (as determined by less contamination of bovine serum albumin) and recovery yield (as determined by greater infectivity). Moreover, overall duration used for cellufine sulfate column chromatography to purify/concentrate DENV was approximately 1/20 of that of conventional method. Therefore, cellufine sulfate column chromatography serves as a simple, rapid, and effective alternative method for DENV purification/concentration. PMID:27155240

  17. A radiometric Bode's Law: Predictions for Uranus

    NASA Technical Reports Server (NTRS)

    Desch, M. D.; Kaiser, M. L.

    1984-01-01

    The magnetospheres of three planets, Earth, Jupiter, and Saturn, are known to be sources of intense, nonthermal radio bursts. The emissions from these sources undergo pronounced long term intensity fluctuations that are caused by the solar wind interaction with the magnetosphere of each planet. Determinations by spacecraft of the low frequency radio spectra and radiation beam geometry now permit a reliable assessment of the overall efficiency of the solar wind in stimulating these emissions. Earlier estimates of how magnetospheric radio output scales with the solar wind energy input must be revised greatly, with the result that, while the efficiency is much lower than previously thought, it is remarkably uniform from planet to planet. The formulation of a radiometric Bode's Law from which a planet's magnetic moment is estimated from its radio emission output is presented. Applying the radiometric scaling law to Uranus, the low-frequency radio power is likely to be measured by the Voyager 2 spacecraft as it approaches this planet.

  18. The Candela and Photometric and Radiometric Measurements

    PubMed Central

    Parr, Albert C.

    2001-01-01

    The national measurement system for photometric and radiometric quantities is presently based upon techniques that make these quantities traceable to a high-accuracy cryogenic radiometer. The redefinition of the candela in 1979 provided the opportunity for national measurement laboratories to base their photometric measurements on optical detector technology rather than on the emission from high-temperature blackbody optical sources. The ensuing technical developments of the past 20 years, including the significant improvements in cryogenic radiometer performance, have provided the opportunity to place the fundamental maintenance of photometric quantities upon absolute detector based technology as was allowed by the 1979 redefinition. Additionally, the development of improved photodetectors has had a significant impact on the methodology in most of the radiometric measurement areas. This paper will review the status of the NIST implementation of the technical changes mandated by the 1979 redefinition of the candela and its effect upon the maintenance and dissemination of optical radiation measurements. PMID:27500020

  19. Infrared radiometric technique in temperature measurement

    NASA Technical Reports Server (NTRS)

    Glazer, S.; Madding, R.

    1988-01-01

    One class of commercially available imaging infrared radiometers using cooled detectors is sensitive to radiation over the 3 to 12 micron wavelength band. Spectral filters can tailor instrument sensitivity to specific regions where the target exhibits optimum radiance. The broadband spectral response coupled with real time two-dimensional imaging and emittance/background temperature corrections make the instruments useful for remote measurement of surface temperatures from -20 C to +1500 C. Commonly used radiometric techniques and assumptions are discussed, and performance specifications for a typical modern commercial instrument are presented. The potential usefulness of an imaging infrared radiometer in space laboratories is highlighted through examples of research, nondestructive evaluation, safety, and routine maintenance applications. Future improvements in instrument design and application of the radiometric technique are discussed.

  20. A Review of LIDAR Radiometric Processing: From Ad Hoc Intensity Correction to Rigorous Radiometric Calibration

    PubMed Central

    Kashani, Alireza G.; Olsen, Michael J.; Parrish, Christopher E.; Wilson, Nicholas

    2015-01-01

    In addition to precise 3D coordinates, most light detection and ranging (LIDAR) systems also record “intensity”, loosely defined as the strength of the backscattered echo for each measured point. To date, LIDAR intensity data have proven beneficial in a wide range of applications because they are related to surface parameters, such as reflectance. While numerous procedures have been introduced in the scientific literature, and even commercial software, to enhance the utility of intensity data through a variety of “normalization”, “correction”, or “calibration” techniques, the current situation is complicated by a lack of standardization, as well as confusing, inconsistent use of terminology. In this paper, we first provide an overview of basic principles of LIDAR intensity measurements and applications utilizing intensity information from terrestrial, airborne topographic, and airborne bathymetric LIDAR. Next, we review effective parameters on intensity measurements, basic theory, and current intensity processing methods. We define terminology adopted from the most commonly-used conventions based on a review of current literature. Finally, we identify topics in need of further research. Ultimately, the presented information helps lay the foundation for future standards and specifications for LIDAR radiometric calibration. PMID:26561813

  1. A Review of LIDAR Radiometric Processing: From Ad Hoc Intensity Correction to Rigorous Radiometric Calibration.

    PubMed

    Kashani, Alireza G; Olsen, Michael J; Parrish, Christopher E; Wilson, Nicholas

    2015-01-01

    In addition to precise 3D coordinates, most light detection and ranging (LIDAR) systems also record "intensity", loosely defined as the strength of the backscattered echo for each measured point. To date, LIDAR intensity data have proven beneficial in a wide range of applications because they are related to surface parameters, such as reflectance. While numerous procedures have been introduced in the scientific literature, and even commercial software, to enhance the utility of intensity data through a variety of "normalization", "correction", or "calibration" techniques, the current situation is complicated by a lack of standardization, as well as confusing, inconsistent use of terminology. In this paper, we first provide an overview of basic principles of LIDAR intensity measurements and applications utilizing intensity information from terrestrial, airborne topographic, and airborne bathymetric LIDAR. Next, we review effective parameters on intensity measurements, basic theory, and current intensity processing methods. We define terminology adopted from the most commonly-used conventions based on a review of current literature. Finally, we identify topics in need of further research. Ultimately, the presented information helps lay the foundation for future standards and specifications for LIDAR radiometric calibration. PMID:26561813

  2. Enhanced radiometric detection of Mycobacterium paratuberculosis by using filter-concentrated bovine fecal specimens.

    PubMed Central

    Collins, M T; Kenefick, K B; Sockett, D C; Lambrecht, R S; McDonald, J; Jorgensen, J B

    1990-01-01

    A commercial radiometric medium, BACTEC 12B, was modified by addition of mycobactin, egg yolk suspension, and antibiotics (vancomycin, amphotericin B, and nalidixic acid). Decontaminated bovine fecal specimens were filter concentrated by using 3-microns-pore-size, 13-mm-diameter polycarbonate filters, and the entire filter was placed into the radiometric broth. Comparison of the radiometric technique with conventional methods on 603 cattle from 9 Mycobacterium paratuberculosis-infected herds found that of 75 positive specimens, the radiometric technique detected 92% while conventional methods detected 60% (P less than 0.0005). Only 3.9% of radiometric cultures were contaminated. To measure the effect of filter concentration of specimens on the detection rate, 5 cattle with minimal and 5 with moderate ileum histopathology were sampled weekly for 3 weeks. M. paratuberculosis was detected in 33.3% of nonfiltered specimens and 76.7% of filtered specimens (P less than 0.005). Detection rates were directly correlated with the severity of disease, and the advantage of specimen concentration was greatest on fecal specimens from cattle with low-grade infections. Detection times were also correlated with infection severity: 13.4 +/- 5.9 days with smear-positive specimens, 27.9 +/- 8.7 days with feces from cows with typical subclinical infections, and 38.7 +/- 3.8 days with fecal specimens from cows with low-grade infections. Use of a cocktail of vancomycin, amphotericin B, and nalidixic acid for selective suppression of nonmycobacterial contaminants was better than the commercial product PANTA (Becton Dickinson Microbiologic Systems, Towson, Md.) only when specimens contained very low numbers of M. paratuberculosis. Radiometric culture of filter-concentrated specimens generally doubled the number of positive fecal specimens detected over conventional methods, making it a useful tool for diagnosis and control of bovine paratuberculosis. PMID:2254428

  3. A Rapid Method for Viral Particle Detection in Viral-Induced Gastroenteritis: A TEM Study

    NASA Astrophysics Data System (ADS)

    Hicks, M. John; Barrish, James P.; Hayes, Elizabeth S.; Leer, Laurie C.; Estes, Mary K.; Cubitt, W. D.

    1995-10-01

    Infectious gastroenteritis is a common cause of hospitalization in the pediatric population. The most frequent cause of gastroenteritis is viral in origin. The purpose of this study was to compare a rapid modified negative-staining TEM method with the conventional pseudoreplica technique in detection of viral particles in fecal samples from children with viral gastroenteritis. The modified negative-staining method resulted in a significantly higher (2.5 ± 0.5, p = 0.02) viral rating score than that for the conventional pseudoreplica technique (1.7 ± 0.4). In addition, the preparation time for the negative-staining method was approximately one fifth that for the conventional pseudoreplica technique. Rapid diagnosis of viral gastroenteritis may be made by ultrastructural detection of viral particles in fecal samples using the negative staining technique.

  4. Studies on the Rapid Methods for Evaluating Seed Vigor of Sweet Corn

    NASA Astrophysics Data System (ADS)

    Zhao, Guangwu; Yang, Linlin; Wang, Jianhua; Zhu, Zhujun

    Since the germination test is still the main method for evaluating seed vigor of sweet corn, it is necessary to study the rapid methods for evaluating their vigor. First, two vigor levels of 9 super sweet corn and 9 sugar enhanced corn hybrids were distinguished by accelerated ageing treatment. Next, their vigor statuses were tested by rapid methods such as electrical conductivity (EC), soluble sugar (SS), volatile aldehyde (VA), dehydrogenase activity (DA) and Q2 oxygen sensing technology. Correlation relationship was analyzed between the above tested values and vigor performances. The results showed that EC, SS, VA, DA, oxygen metabolism rate (OMR), critical oxygen pressure (COP) were all suitable to evaluate seed vigor of sweet corn. Furthermore, VA was optimal for evaluating seed vigor of super sweet corn. DA was optimal for evaluating sugar enhanced corn.

  5. A simple, low-cost staining method for rapid-throughput analysis of tumor spheroids

    PubMed Central

    Eckerdt, Frank; Alvarez, Angel; Bell, Jonathan; Arvanitis, Constadina; Iqbal, Asneha; Arslan, Ahmet D.; Hu, Bo; Cheng, Shi-Yuan; Goldman, Stewart; Platanias, Leonidas C.

    2016-01-01

    Tumor spheroids are becoming an important tool for the investigation of cancer stem cell (CSC) function in tumors; thus, low-cost and high-throughput methods for drug screening of tumor spheroids are needed. Using neurospheres as non-adherent three-dimensional (3-D) cultures, we developed a simple, low-cost acridine orange (AO)–based method that allows for rapid analysis of live neurospheres by fluorescence microscopy in a 96-well format. This assay measures the cross-section area of a spheroid, which corresponds to cell viability. Our novel method allows rapid screening of a panel of anti-proliferative drugs to assess inhibitory effects on the growth of cancer stem cells in 3-D cultures. PMID:26757811

  6. Geometric and Radiometric Evaluation of Rasat Images

    NASA Astrophysics Data System (ADS)

    Cam, Ali; Topan, Hüseyin; Oruç, Murat; Özendi, Mustafa; Bayık, Çağlar

    2016-06-01

    RASAT, the second remote sensing satellite of Turkey, was designed and assembled, and also is being operated by TÜBİTAK Uzay (Space) Technologies Research Institute (Ankara). RASAT images in various levels are available free-of-charge via Gezgin portal for Turkish citizens. In this paper, the images in panchromatic (7.5 m GSD) and RGB (15 m GSD) bands in various levels were investigated with respect to its geometric and radiometric characteristics. The first geometric analysis is the estimation of the effective GSD as less than 1 pixel for radiometrically processed level (L1R) of both panchromatic and RGB images. Secondly, 2D georeferencing accuracy is estimated by various non-physical transformation models (similarity, 2D affine, polynomial, affine projection, projective, DLT and GCP based RFM) reaching sub-pixel accuracy using minimum 39 and maximum 52 GCPs. The radiometric characteristics are also investigated for 8 bits, estimating SNR between 21.8-42.2, and noise 0.0-3.5 for panchromatic and MS images for L1R when the sea is masked to obtain the results for land areas. The analysis show that RASAT images satisfies requirements for various applications. The research is carried out in Zonguldak test site which is mountainous and partly covered by dense forest and urban areas.

  7. Revised landsat-5 thematic mapper radiometric calibration

    USGS Publications Warehouse

    Chander, G.; Markham, B.L.; Barsi, J.A.

    2007-01-01

    Effective April 2, 2007, the radiometric calibration of Landsat-5 (L5) Thematic Mapper (TM) data that are processed and distributed by the U.S. Geological Survey (USGS) Center for Earth Resources Observation and Science (EROS) will be updated. The lifetime gain model that was implemented on May 5, 2003, for the reflective bands (1-5, 7) will be replaced by a new lifetime radiometric-calibration curve that is derived from the instrument's response to pseudoinvariant desert sites and from cross calibration with the Landsat-7 (L7) Enhanced TM Plus (ETM+). Although this calibration update applies to all archived and future L5 TM data, the principal improvements in the calibration are for the data acquired during the first eight years of the mission (1984-1991), where the changes in the instrument-gain values are as much as 15%. The radiometric scaling coefficients for bands 1 and 2 for approximately the first eight years of the mission have also been changed. Users will need to apply these new coefficients to convert the calibrated data product digital numbers to radiance. The scaling coefficients for the other bands have not changed. ?? 2007 IEEE.

  8. Determination of rapid chlorination rate constants by a stopped-flow spectrophotometric competition kinetics method.

    PubMed

    Song, Dean; Liu, Huijuan; Qiang, Zhimin; Qu, Jiuhui

    2014-05-15

    Free chlorine is extensively used for water and wastewater disinfection nowadays. However, it still remains a big challenge to determine the rate constants of rapid chlorination reactions although competition kinetics and stopped-flow spectrophotometric (SFS) methods have been employed individually to investigate fast reaction kinetics. In this work, we proposed an SFS competition kinetics method to determine the rapid chlorination rate constants by using a common colorimetric reagent, N,N-diethyl-p-phenylenediamine (DPD), as a reference probe. A kinetic equation was first derived to estimate the reaction rate constant of DPD towards chlorine under a given pH and temperature condition. Then, on that basis, an SFS competition kinetics method was proposed to determine directly the chlorination rate constants of several representative compounds including tetracycline, ammonia, and four α-amino acids. Although Cl2O is more reactive than HOCl, its contribution to the overall chlorination kinetics of the test compounds could be neglected in this study. Finally, the developed method was validated through comparing the experimentally measured chlorination rate constants of the selected compounds with those obtained or calculated from literature and analyzing with Taft's correlation as well. This study demonstrates that the SFS competition kinetics method can measure the chlorination rate constants of a test compound rapidly and accurately. PMID:24602867

  9. Rapid Column Extraction Method for Actinides and Sr-89/90 in Water Samples

    SciTech Connect

    MAXWELL III, SHERROD L.

    2005-06-15

    The SRS Environmental Laboratory analyzes water samples for environmental monitoring, including river water and ground water samples. A new, faster actinide and strontium 89/90 separation method has been developed and implemented to improve productivity, reduce labor costs and add capacity to this laboratory. This method uses stacked TEVA Resin{reg_sign}, TRU Resin{reg_sign} and Sr-Resin{reg_sign} cartridges from Eichrom Technologies (Darien, IL, USA) that allows the rapid separation of plutonium (Pu), neptunium (Np), uranium (U), americium (Am), curium (Cm) and thorium (Th) using a single multi-stage column combined with alpha spectrometry. By using vacuum box cartridge technology with rapid flow rates, sample preparation time is minimized. The method can be used for routine analysis or as a rapid method for emergency preparedness. Thorium and curium are often analyzed separately due to the interference of the daughter of Th-229 tracer, actinium (Ac)-225, on curium isotopes when measured by alpha spectrometry. This new method also adds a separation step using DGA Resin{reg_sign}, (Diglycolamide Resin, Eichrom Technologies) to remove Ac-225 and allow the separation and analysis of thorium isotopes and curium isotopes at the same time.

  10. Mycobacteria mobility shift assay: a method for the rapid identification of Mycobacterium tuberculosis and nontuberculous mycobacteria

    PubMed Central

    Wildner, Letícia Muraro; Bazzo, Maria Luiza; Liedke, Susie Coutinho; Nogueira, Christiane Lourenço; Segat, Gabriela; Senna, Simone Gonçalves; Schlindwein, Aline Daiane; de Oliveira, Jaquelline Germano; Rovaris, Darcita B; Bonjardim, Claudio A; Kroon, Erna G; Ferreira, Paulo CP

    2014-01-01

    The identification of mycobacteria is essential because tuberculosis (TB) and mycobacteriosis are clinically indistinguishable and require different therapeutic regimens. The traditional phenotypic method is time consuming and may last up to 60 days. Indeed, rapid, affordable, specific and easy-to-perform identification methods are needed. We have previously described a polymerase chain reaction-based method called a mycobacteria mobility shift assay (MMSA) that was designed for Mycobacterium tuberculosis complex (MTC) and nontuberculous mycobacteria (NTM) species identification. The aim of this study was to assess the MMSA for the identification of MTC and NTM clinical isolates and to compare its performance with that of the PRA-hsp65 method. A total of 204 clinical isolates (102 NTM and 102 MTC) were identified by the MMSA and PRA-hsp65. For isolates for which these methods gave discordant results, definitive species identification was obtained by sequencing fragments of the 16S rRNA and hsp65 genes. Both methods correctly identified all MTC isolates. Among the NTM isolates, the MMSA alone assigned 94 (92.2%) to a complex or species, whereas the PRA-hsp65 method assigned 100% to a species. A 91.5% agreement was observed for the 94 NTM isolates identified by both methods. The MMSA provided correct identification for 96.8% of the NTM isolates compared with 94.7% for PRA-hsp65. The MMSA is a suitable auxiliary method for routine use for the rapid identification of mycobacteria. PMID:24821059

  11. Radiometric Characterization of Hyperspectral Imagers using Multispectral Sensors

    NASA Technical Reports Server (NTRS)

    McCorkel, Joel; Kurt, Thome; Leisso, Nathan; Anderson, Nikolaus; Czapla-Myers, Jeff

    2009-01-01

    The Remote Sensing Group (RSG) at the University of Arizona has a long history of using ground-based test sites for the calibration of airborne and satellite based sensors. Often, ground-truth measurements at these test sites are not always successful due to weather and funding availability. Therefore, RSG has also automated ground instrument approaches and cross-calibration methods to verify the radiometric calibration of a sensor. The goal in the cross-calibration method is to transfer the calibration of a well-known sensor to that of a different sensor, This work studies the feasibility of determining the radiometric calibration of a hyperspectral imager using multispectral a imagery. The work relies on the Moderate Resolution Imaging Spectroradiometer (M0DIS) as a reference for the hyperspectral sensor Hyperion. Test sites used for comparisons are Railroad Valley in Nevada and a portion of the Libyan Desert in North Africa. Hyperion bands are compared to MODIS by band averaging Hyperion's high spectral resolution data with the relative spectral response of M0DlS. The results compare cross-calibration scenarios that differ in image acquisition coincidence, test site used for the calibration, and reference sensor. Cross-calibration results are presented that show agreement between the use of coincident and non-coincident image pairs within 2% in most brands as well as similar agreement between results that employ the different MODIS sensors as a reference.

  12. Radiometric characterization of hyperspectral imagers using multispectral sensors

    NASA Astrophysics Data System (ADS)

    McCorkel, Joel; Thome, Kurt; Leisso, Nathan; Anderson, Nikolaus; Czapla-Myers, Jeff

    2009-08-01

    The Remote Sensing Group (RSG) at the University of Arizona has a long history of using ground-based test sites for the calibration of airborne and satellite based sensors. Often, ground-truth measurements at these tests sites are not always successful due to weather and funding availability. Therefore, RSG has also employed automated ground instrument approaches and cross-calibration methods to verify the radiometric calibration of a sensor. The goal in the cross-calibration method is to transfer the calibration of a well-known sensor to that of a different sensor. This work studies the feasibility of determining the radiometric calibration of a hyperspectral imager using multispectral imagery. The work relies on the Moderate Resolution Imaging Spectroradiometer (MODIS) as a reference for the hyperspectral sensor Hyperion. Test sites used for comparisons are Railroad Valley in Nevada and a portion of the Libyan Desert in North Africa. Hyperion bands are compared to MODIS by band averaging Hyperion's high spectral resolution data with the relative spectral response of MODIS. The results compare cross-calibration scenarios that differ in image acquisition coincidence, test site used for the calibration, and reference sensor. Cross-calibration results are presented that show agreement between the use of coincident and non-coincident image pairs within 2% in most bands as well as similar agreement between results that employ the different MODIS sensors as a reference.

  13. Artifact correction and absolute radiometric calibration techniques employed in the Landsat 7 image assessment system

    USGS Publications Warehouse

    Boncyk, Wayne C.; Markham, Brian L.; Barker, John L.; Helder, Dennis

    1996-01-01

    The Landsat-7 Image Assessment System (IAS), part of the Landsat-7 Ground System, will calibrate and evaluate the radiometric and geometric performance of the Enhanced Thematic Mapper Plus (ETM +) instrument. The IAS incorporates new instrument radiometric artifact correction and absolute radiometric calibration techniques which overcome some limitations to calibration accuracy inherent in historical calibration methods. Knowledge of ETM + instrument characteristics gleaned from analysis of archival Thematic Mapper in-flight data and from ETM + prelaunch tests allow the determination and quantification of the sources of instrument artifacts. This a priori knowledge will be utilized in IAS algorithms designed to minimize the effects of the noise sources before calibration, in both ETM + image and calibration data.

  14. Absolute radiometric calibration of Als intensity data: effects on accuracy and target classification.

    PubMed

    Kaasalainen, Sanna; Pyysalo, Ulla; Krooks, Anssi; Vain, Ants; Kukko, Antero; Hyyppä, Juha; Kaasalainen, Mikko

    2011-01-01

    Radiometric calibration of airborne laser scanning (ALS) intensity data aims at retrieving a value related to the target scattering properties, which is independent on the instrument or flight parameters. The aim of a calibration procedure is also to be able to compare results from different flights and instruments, but practical applications are sparsely available, and the performance of calibration methods for this purpose needs to be further assessed. We have studied the radiometric calibration with data from three separate flights and two different instruments using external calibration targets. We find that the intensity data from different flights and instruments can be compared to each other only after a radiometric calibration process using separate calibration targets carefully selected for each flight. The calibration is also necessary for target classification purposes, such as separating vegetation from sand using intensity data from different flights. The classification results are meaningful only for calibrated intensity data. PMID:22346660

  15. Radiometric calibration and processing procedure for reflective bands on LANDSAT-4 protoflight Thematic Mapper

    NASA Technical Reports Server (NTRS)

    Barker, J. L.; Abrams, R. B.; Ball, D. L.; Leung, K. C.

    1984-01-01

    The radiometric subsystem of NASA's LANDSAT-4 Thematic Mapper (TM) sensor is described. Special emphasis is placed on the internal calibrator (IC) pulse shapes and timing cycle. The procedures for the absolute radiometric calibration of the TM channels with a 122-centimeter integrating sphere and the transfer of radiometric calibration from the channels to the IC are reviewed. The use of the IC to calibrate TM data in the ground processing system consists of pulse integration, pulse averaging, IC state identification, linear regression analysis, and histogram equalization. An overview of the SCROUNGE-era (before August 1983) method is presented. Procedural differences between SCROUNGE and the TIPS-era (after July 1983) and the implications of these differences are discussed.

  16. Radiometric Calibration of Mars HiRISE High Resolution Imagery Based on Fpga

    NASA Astrophysics Data System (ADS)

    Hou, Yifan; Geng, Xun; Xing, Shuai; Tang, Yonghe; Xu, Qing

    2016-06-01

    Due to the large data amount of HiRISE imagery, traditional radiometric calibration method is not able to meet the fast processing requirements. To solve this problem, a radiometric calibration system of HiRISE imagery based on field program gate array (FPGA) is designed. The montage gap between two channels caused by gray inconsistency is removed through histogram matching. The calibration system is composed of FPGA and DSP, which makes full use of the parallel processing ability of FPGA and fast computation as well as flexible control characteristic of DSP. Experimental results show that the designed system consumes less hardware resources and the real-time processing ability of radiometric calibration of HiRISE imagery is improved.

  17. Absolute Radiometric Calibration of ALS Intensity Data: Effects on Accuracy and Target Classification

    PubMed Central

    Kaasalainen, Sanna; Pyysalo, Ulla; Krooks, Anssi; Vain, Ants; Kukko, Antero; Hyyppä, Juha; Kaasalainen, Mikko

    2011-01-01

    Radiometric calibration of airborne laser scanning (ALS) intensity data aims at retrieving a value related to the target scattering properties, which is independent on the instrument or flight parameters. The aim of a calibration procedure is also to be able to compare results from different flights and instruments, but practical applications are sparsely available, and the performance of calibration methods for this purpose needs to be further assessed. We have studied the radiometric calibration with data from three separate flights and two different instruments using external calibration targets. We find that the intensity data from different flights and instruments can be compared to each other only after a radiometric calibration process using separate calibration targets carefully selected for each flight. The calibration is also necessary for target classification purposes, such as separating vegetation from sand using intensity data from different flights. The classification results are meaningful only for calibrated intensity data. PMID:22346660

  18. Rapid identification of Candida species in blood cultures by a clinically useful PCR method.

    PubMed Central

    Shin, J H; Nolte, F S; Morrison, C J

    1997-01-01

    Widespread use of fluconazole for the prophylaxis and treatment of candidiasis has led to a reduction in the number of cases of candidemia caused by Candida albicans but has also resulted in the emergence of candidemias caused by innately fluconazole-resistant, non-C. albicans Candida species. Given the fulminant and rapidly fatal outcome of acute disseminated candidiasis, rapid identification of newly emerging Candida species in blood culture is critical for the implementation of appropriately targeted antifungal drug therapy. Therefore, we used a PCR-based assay to rapidly identify Candida species from positive blood culture bottles. This assay used fungus-specific, universal primers for DNA amplification and species-specific probes to identify C. albicans, C. krusei, C. parapsilosis, C. tropicalis, or C. glabrata amplicons. It also used a simpler and more rapid (1.5-h) sample preparation technique than those described previously and used detergent, heat, and mechanical breakage to recover Candida species DNA from blood cultures. A simple and rapid (3.5-h) enzyme immunosorbent assay (EIA)-based format was then used for amplicon detection. One hundred fifty blood culture bottles, including 73 positive blood culture bottle sets (aerobic and anaerobic) from 31 patients with candidemia, were tested. The combined PCR and EIA methods (PCR-EIA) correctly identified all Candida species in 73 blood culture bottle sets, including bottles containing bacteria coisolated with yeasts and 3 cultures of samples from patients with mixed candidemias originally identified as single-species infections by routine phenotypic identification methods. Species identification time was reduced from a mean of 3.5 days by routine phenotypic methods to 7 h by the PCR-EIA method. No false-positive results were obtained for patients with bacteremias (n = 18), artificially produced non-Candida fungemias (n = 3), or bottles with no growth (n = 20). Analytical sensitivity was 1 cell per 2-microl

  19. Rapid diagnostic methods for influenza virus in clinical specimens - A comparative study

    NASA Technical Reports Server (NTRS)

    Evans, A. S.; Olson, B.

    1982-01-01

    A comparison of five rapid viral diagnostic techniques for identifying influenza virus in nasopharyngeal aspirates has been made on patients with influenza-like illnesses. Initial results with immune electron microscopy were positive in only one of 11 specimens from which virus was isolated and further work abandoned. Four other rapid tests were carried out on 39 specimens from which influenza virus had been isolated in tissue culture in 28. Of these 28 specimens yielding virus, 24 (85.7 percent) were positive by an indirect fluorescent antibody test (IFAT) on nasopharyngeal cells, 18 (64.3 percent) by enzyme-linked immunosorbent assay (ELISA), 19 (67.8 percent) by enzyme-linked fluorescent assay (ELFA), and 26 (92.8 percent) by a rapid tissue culture amplification method (TCA) in a continuous Rhesus monkey kidney line (LLC-MK2) with identification of virus by fluorescent antibody. In terms of sensitivity, simplicity, and rapidity, a combination of the IFAT and TCA methods seems to be very useful.

  20. Development of a loop-mediated isothermal amplification method for rapid detection of pigeon circovirus.

    PubMed

    Tsai, Shinn Shyong; Chang, Yeng Ling; Huang, Yen Li; Liu, Hung Jen; Ke, Guan Ming; Chiou, Chwei Jang; Hsieh, Yao Ching; Chang, Tsung Chou; Cheng, Li Ting; Chuang, Kuo Pin

    2014-05-01

    There are no effective antiviral treatments for pigeon circovirus (PiCV); thus, rapid diagnosis is critical for effective control of the disease caused by this virus. The recent development of a novel LAMP technique that amplifies nucleic acids rapidly with high specificity and sensitivity under isothermal conditions has overcome some of the deficiencies of nucleic-acid-based diagnostic tests. We established a LAMP method for rapid detection of PiCV using two pairs of primers that were designed from PiCV and compared its sensitivity and specificity with that of PCR. Amplification by LAMP was optimal at 63 °C for 60 min. The detection limit was nearly 0.5 pg of PiCV DNA, making it ten times more sensitive than PCR. There was no cross-reaction with porcine circovirus type 2 (PCV2), pigeon Trichomonas gallinae, or pigeon herpesvirus (PHV) under the same conditions. The assay also successfully detected the pathogen DNA in the tissues of infected pigeons. This is the first report indicating that LAMP is a valuable, rapid method of detecting PiCV with high sensitivity and specificity. PMID:24193953

  1. Evaluation of a rapid method of determination of plasma fibrinogen in swine.

    PubMed

    Fontaine, M; McSherry, B J; Valli, V E

    1977-04-01

    An evaluation was made of a rapid semiautomated method for determining fibrinogen level in swine plasma. This method, referred to as thrombin time method or fibrometer method, is based on the principle that when thrombin is added to suitably diluted plasma, the time of clotting is linearly related to the fibrinogen concentration. The linear regression model for the standard curve prepared using swine plasma had an r value of 0.998. A comparison between the fibrometer and the Grannis methods done on 189 swine plasma samples showed good correlation between these two mehtods (r value 0.847). It was concluded that although the fibrometer method may not be as precise as the Grannis method, it would still be acceptable for clinical use in swine. PMID:861838

  2. Evaluation of a dry, rehydratable film method for rapid enumeration of Staphylococcus aureus.

    PubMed

    Mach, P A; Lindberg, K G; Lund, M E

    2000-01-01

    Results with the new 3M Petrifilm Rapid S. aureus Count (RSA) Plate method were compared with those of the classical Baird-Parker agar (BPA) method for detection and enumeration of Staphylococcus aureus. Studies on 219 bacterial strains demonstrated that the Petrifilm RSA plate is more sensitive than and as specific as the classical BPA method for confirmed identification of S. aureus. Counts of colonies from 71 pure cultures, 61 naturally contaminated food samples, and more than 750 artificially inoculated food samples showed that the Petrifilm RSA method was as effective as the classical BPA method for identification and enumeration of S. aureus. The Petrifilm RSA method gave results in one-third the time required for the classical method. PMID:11048850

  3. Rapid method for the determination of 226Ra in hydraulic fracturing wastewater samples

    DOE PAGESBeta

    Maxwell, Sherrod L.; Culligan, Brian K.; Warren, Richard A.; McAlister, Daniel R.

    2016-03-24

    A new method that rapidly preconcentrates and measures 226Ra from hydraulic fracturing wastewater samples was developed in the Savannah River Environmental Laboratory. The method improves the quality of 226Ra measurements using gamma spectrometry by providing up to 100x preconcentration of 226Ra from this difficult sample matrix, which contains very high levels of calcium, barium, strontium, magnesium and sodium. The high chemical yield, typically 80-90%, facilitates a low detection limit, important for lower level samples, and indicates method ruggedness. Ba-133 tracer is used to determine chemical yield and correct for geometry-related counting issues. The 226Ra sample preparation takes < 2 hours.

  4. Rapid methods for testing the efficacy of sterilization-grade filter membranes.

    PubMed

    Griffiths, M H; Andrew, P W; Ball, P R; Hall, G M

    2000-08-01

    The validation of sterilization-grade membranes is integral to ensuring the efficient and safe use of microfiltration systems. Here validation refers to the production of sterile filtrate for sterilizing-grade membranes under challenge test conditions. Current validation methods require 48 h of culture for results to become available, which creates time delays within the manufacturing process and quality control (QC) backlogs. This work compares four methods for the production of filter challenge test data, to the desired test sensitivity, within 24 h using bioluminescent and fluorescent recombinant strains of the test organism Brevundimonas diminuta. These methods should provide a way to implement more rapid QC test regimens for filters. PMID:10919803

  5. Compression-based distance (CBD): a simple, rapid, and accurate method for microbiota composition comparison

    PubMed Central

    2013-01-01

    Background Perturbations in intestinal microbiota composition have been associated with a variety of gastrointestinal tract-related diseases. The alleviation of symptoms has been achieved using treatments that alter the gastrointestinal tract microbiota toward that of healthy individuals. Identifying differences in microbiota composition through the use of 16S rRNA gene hypervariable tag sequencing has profound health implications. Current computational methods for comparing microbial communities are usually based on multiple alignments and phylogenetic inference, making them time consuming and requiring exceptional expertise and computational resources. As sequencing data rapidly grows in size, simpler analysis methods are needed to meet the growing computational burdens of microbiota comparisons. Thus, we have developed a simple, rapid, and accurate method, independent of multiple alignments and phylogenetic inference, to support microbiota comparisons. Results We create a metric, called compression-based distance (CBD) for quantifying the degree of similarity between microbial communities. CBD uses the repetitive nature of hypervariable tag datasets and well-established compression algorithms to approximate the total information shared between two datasets. Three published microbiota datasets were used as test cases for CBD as an applicable tool. Our study revealed that CBD recaptured 100% of the statistically significant conclusions reported in the previous studies, while achieving a decrease in computational time required when compared to similar tools without expert user intervention. Conclusion CBD provides a simple, rapid, and accurate method for assessing distances between gastrointestinal tract microbiota 16S hypervariable tag datasets. PMID:23617892

  6. RAPID METHOD FOR PLUTONIUM, AMERICIUM AND CURIUM IN VERY LARGE SOIL SAMPLES

    SciTech Connect

    Maxwell, S

    2007-01-08

    The analysis of actinides in environmental soil and sediment samples is very important for environmental monitoring. There is a need to measure actinide isotopes with very low detection limits. A new, rapid actinide separation method has been developed and implemented that allows the measurement of plutonium, americium and curium isotopes in very large soil samples (100-200 g) with high chemical recoveries and effective removal of matrix interferences. This method uses stacked TEVA Resin{reg_sign}, TRU Resin{reg_sign} and DGA-Resin{reg_sign} cartridges from Eichrom Technologies (Darien, IL, USA) that allows the rapid separation of plutonium (Pu), americium (Am), and curium (Cm) using a single multistage column combined with alpha spectrometry. The method combines an acid leach step and innovative matrix removal using cerium fluoride precipitation to remove the difficult soil matrix. This method is unique in that it provides high tracer recoveries and effective removal of interferences with small extraction chromatography columns instead of large ion exchange resin columns that generate large amounts of acid waste. By using vacuum box cartridge technology with rapid flow rates, sample preparation time is minimized.

  7. Application of Rapid Prototyping Methods to High-Speed Wind Tunnel Testing

    NASA Technical Reports Server (NTRS)

    Springer, A. M.

    1998-01-01

    This study was undertaken in MSFC's 14-Inch Trisonic Wind Tunnel to determine if rapid prototyping methods could be used in the design and manufacturing of high speed wind tunnel models in direct testing applications, and if these methods would reduce model design/fabrication time and cost while providing models of high enough fidelity to provide adequate aerodynamic data, and of sufficient strength to survive the test environment. Rapid prototyping methods utilized to construct wind tunnel models in a wing-body-tail configuration were: fused deposition method using both ABS plastic and PEEK as building materials, stereolithography using the photopolymer SL-5170, selective laser sintering using glass reinforced nylon, and laminated object manufacturing using plastic reinforced with glass and 'paper'. This study revealed good agreement between the SLA model, the metal model with an FDM-ABS nose, an SLA nose, and the metal model for most operating conditions, while the FDM-ABS data diverged at higher loading conditions. Data from the initial SLS model showed poor agreement due to problems in post-processing, resulting in a different configuration. A second SLS model was tested and showed relatively good agreement. It can be concluded that rapid prototyping models show promise in preliminary aerodynamic development studies at subsonic, transonic, and supersonic speeds.

  8. NASA IKONOS Multispectral Radiometric Calibration and 3-Year Temporal Stability Assessment

    NASA Technical Reports Server (NTRS)

    Pagnutti, Mary; Carver, David; Holekamp, Kara; Ryan, Robert; Zanoni, Vicki; Thome, Kurtis; Schiller, Stephen; Aaran, David

    2003-01-01

    Radiometric calibration of commercial imaging satellite products is required to ensure that science and application communities can place confidence in the imagery they use and can fully understand its properties. Inaccurate radiometric calibrations can lead to erroneous decisions and invalid conclusions and can limit intercomparisons with other system. In addition, the user community has little or no insight into the design and operation of commercial sensors or into the methods involved in generating commercial products. To address this calibration need, the NASA Stennis Space Center (SSC) Earth Science Applications (ESA) Directorate established a commercial satellite imaging radiometric calibration team consisting of three independent groups: NASA, SSC,ESA, the University of Arizona Remote Sensing Group, and South Dacota State University. Each group determined the absolute radiometric calibration coefficients of the Space Imaging IKONOS 4-band, 4 m multispectral product covering the visible through near-infrared spectral region. For a three year period beginning in 2000, each team employed some variant of a reflectance-based vicarious calibration approach, requiring ground-based measurements coincident with IKONOS image acquisitions and radiative transfer calculations. Several study sites throughout the United States were employed that covered nearly the entire dynamic range of the IKONOS sensor. IKONOS at-sensor radiance values were compared to those estimated by each independent group to determine the IKONOS sensor's radiometric accuracy and stability. Over 10 individual vicariously determined at-sensor radiance estimates were used each year. When combined, these estimates provided a high-precision radiometric gain calibration coefficient. No significant calibration offset was observed. The results of this evaluation provide the scientific community with an independent assessment of the IKONOS sensor's absolute calibration and temporal stability over the 3

  9. Rapid method for DNA isolation from a tough cell wall green alga Tetraspora sp. CU2551.

    PubMed

    Maneeruttanarungroj, Cherdsak; Incharoensakdi, Aran

    2016-06-01

    Genetic studies are important to understand the complex biological system of various organisms. Some eukaryotic green organisms have tough cell wall which precludes the efficient extraction of the genetic materials. Here, we developed the method for simple and rapid isolation of high quality DNA from a green alga Tetraspora sp. CU2551. The cell homogenization procedures were combined with physical force plus heat treatment to disrupt the cell envelope of Tetraspora sp. CU2551. Without protease treatment, vortexing with glass bead for 30-105 s at 70 °C led to the isolation of a high purity DNA which was suitable for downstream process. The improved method was successfully developed and could be applied for the rapid isolation of DNA from other unicellular and filamentous green microalgal strains. PMID:27116965

  10. Evaluation of methods for rapid determination of freezing point of aviation fuels

    NASA Technical Reports Server (NTRS)

    Mathiprakasam, B.

    1982-01-01

    Methods for identification of the more promising concepts for the development of a portable instrument to rapidly determine the freezing point of aviation fuels are described. The evaluation process consisted of: (1) collection of information on techniques previously used for the determination of the freezing point, (2) screening and selection of these techniques for further evaluation of their suitability in a portable unit for rapid measurement, and (3) an extensive experimental evaluation of the selected techniques and a final selection of the most promising technique. Test apparatuses employing differential thermal analysis and the change in optical transparency during phase change were evaluated and tested. A technique similar to differential thermal analysis using no reference fuel was investigated. In this method, the freezing point was obtained by digitizing the data and locating the point of inflection. Results obtained using this technique compare well with those obtained elsewhere using different techniques. A conceptual design of a portable instrument incorporating this technique is presented.

  11. Fuji apple storage time rapid determination method using Vis/NIR spectroscopy.

    PubMed

    Liu, Fuqi; Tang, Xuxiang

    2015-01-01

    Fuji apple storage time rapid determination method using visible/near-infrared (Vis/NIR) spectroscopy was studied in this paper. Vis/NIR diffuse reflection spectroscopy responses to samples were measured for 6 days. Spectroscopy data were processed by stochastic resonance (SR). Principal component analysis (PCA) was utilized to analyze original spectroscopy data and SNR eigen value. Results demonstrated that PCA could not totally discriminate Fuji apples using original spectroscopy data. Signal-to-noise ratio (SNR) spectrum clearly classified all apple samples. PCA using SNR spectrum successfully discriminated apple samples. Therefore, Vis/NIR spectroscopy was effective for Fuji apple storage time rapid discrimination. The proposed method is also promising in condition safety control and management for food and environmental laboratories. PMID:25874818

  12. Method for rapid base sequencing in DNA and RNA with two base labeling

    DOEpatents

    Jett, J.H.; Keller, R.A.; Martin, J.C.; Posner, R.G.; Marrone, B.L.; Hammond, M.L.; Simpson, D.J.

    1995-04-11

    A method is described for rapid-base sequencing in DNA and RNA with two-base labeling and employing fluorescent detection of single molecules at two wavelengths. Bases modified to accept fluorescent labels are used to replicate a single DNA or RNA strand to be sequenced. The bases are then sequentially cleaved from the replicated strand, excited with a chosen spectrum of electromagnetic radiation, and the fluorescence from individual, tagged bases detected in the order of cleavage from the strand. 4 figures.

  13. Rapid direct methods for enumeration of specific, active bacteria in water and biofilms

    NASA Technical Reports Server (NTRS)

    McFeters, G. A.; Pyle, B. H.; Lisle, J. T.; Broadaway, S. C.

    1999-01-01

    Conventional methods for detecting indicator and pathogenic bacteria in water may underestimate the actual population due to sublethal environmental injury, inability of the target bacteria to take up nutrients and other physiological factors which reduce bacterial culturability. Rapid and direct methods are needed to more accurately detect and enumerate active bacteria. Such a methodological advance would provide greater sensitivity in assessing the microbiological safety of water and food. The principle goal of this presentation is to describe novel approaches we have formulated for the rapid and simultaneous detection of bacteria plus the determination of their physiological activity in water and other environmental samples. The present version of our method involves the concentration of organisms by membrane filtration or immunomagnetic separation and combines an intracellular fluorochrome (CTC) for assessment of respiratory activity plus fluorescent-labelled antibody detection of specific bacteria. This approach has also been successfully used to demonstrate spatial and temporal heterogeneities of physiological activities in biofilms when coupled with cryosectioning. Candidate physiological stains include those capable of determining respiratory activity, membrane potential, membrane integrity, growth rate and cellular enzymatic activities. Results obtained thus far indicate that immunomagnetic separation can provide a high degree of sensitivity in the recovery of seeded target bacteria (Escherichia coli O157:H7) in water and hamburger. The captured and stained target bacteria are then enumerated by either conventional fluorescence microscopy or ChemScan(R), a new instrument that is very sensitive and rapid. The ChemScan(R) laser scanning instrument (Chemunex, Paris, France) provides the detection of individual fluorescently labelled bacterial cells using three emission channels in less than 5 min. A high degree of correlation has been demonstrated between

  14. Method for rapid base sequencing in DNA and RNA with two base labeling

    DOEpatents

    Jett, James H.; Keller, Richard A.; Martin, John C.; Posner, Richard G.; Marrone, Babetta L.; Hammond, Mark L.; Simpson, Daniel J.

    1995-01-01

    Method for rapid-base sequencing in DNA and RNA with two-base labeling and employing fluorescent detection of single molecules at two wavelengths. Bases modified to accept fluorescent labels are used to replicate a single DNA or RNA strand to be sequenced. The bases are then sequentially cleaved from the replicated strand, excited with a chosen spectrum of electromagnetic radiation, and the fluorescence from individual, tagged bases detected in the order of cleavage from the strand.

  15. An Innovative Method for Rapid Identification and Detection of Vibrio alginolyticus in Different Infection Models

    PubMed Central

    Fu, Kaifei; Li, Jun; Wang, Yuxiao; Liu, Jianfei; Yan, He; Shi, Lei; Zhou, Lijun

    2016-01-01

    Vibrio alginolyticus is one of the most common pathogenic marine Vibrio species, and has been found to cause serious seafood-poisoning or fatal extra-intestinal infections in humans, such as necrotizing soft-tissue infections, bacteremia, septic shock, and multiple organ failures. Delayed accurate diagnosis and treatment of most Vibrio infections usually result to high mortality rates. The objective of this study was to establish a rapid diagnostic method to detect and identify the presence of V. alginolyticus in different samples, so as to facilitate timely treatment. The widely employed conventional methods for detection of V. alginolyticus include biochemical identification and a variety of PCR methods. The former is of low specificity and time-consuming (2–3 days), while the latter has improved accuracy and processing time. Despite such advancements, these methods are still complicated, time-consuming, expensive, require expertise and advanced laboratory systems, and are not optimal for field use. With the goal of providing a simple and efficient way to detect V. alginolyticus, we established a rapid diagnostic method based on loop-mediated Isothermal amplification (LAMP) technology that is feasible to use in both experimental and field environments. Three primer pairs targeting the toxR gene of V. alginolyticus were designed, and amplification was carried out in an ESE tube scanner and Real-Time PCR device. We successfully identified 93 V. alginolyticus strains from a total of 105 different bacterial isolates and confirmed their identity by 16s rDNA sequencing. We also applied this method on infected mouse blood and contaminated scallop samples, and accurate results were both easily and rapidly (20–60 min) obtained. Therefore, the RT-LAMP assay we developed can be conveniently used to detect the presence of V. alginolyticus in different samples. Furthermore, this method will also fulfill the gap for real-time screening of V. alginolyticus infections

  16. Rapid method to determine 89Sr/90Sr in large concrete samples

    DOE PAGESBeta

    Maxwell, Sherrod L.; Culligan, Brian; Hutchison, Jay B.; Utsey, Robin C.; Sudowe, Ralf; McAlister, Daniel R.

    2016-03-24

    Here, a new rapid method has been developed that provides high quality low-level measurements of 89,90Sr in concrete samples with an MDA (Minimum Detectable Activity) of <1 mBq g-1. The new method is fast, meets new decommissioning regulatory limits and is robust even if refractory particles are present. The method utilizes a rapid fusion to ensure total dissolution of samples and rapid preconcentration and separation of 89,90Sr from 5-10 g concrete samples. When, the 89Sr/90Sr ratio is high, Sr can be isolated from up to 5g concrete samples, total 89/90Sr measured, and then 90Sr determined via 90Y separated after amore » period of ingrowth. Another approach allows the immediate determination of 90Sr in 10 g concrete aliquots without waiting for 90Y ingrowth, in instances where the shorter lived 89Sr is unlikely to be encountered.« less

  17. Conventional Rapid Latex Agglutination in Estimation of von Willebrand Factor: Method Revisited and Potential Clinical Applications

    PubMed Central

    Che Hussin, Che Maraina

    2014-01-01

    Measurement of von Willebrand factor antigen (VWF : Ag) levels is usually performed in a specialised laboratory which limits its application in routine clinical practice. So far, no commercial rapid test kit is available for VWF : Ag estimation. This paper discusses the technical aspect of latex agglutination method which was established to suit the purpose of estimating von Willebrand factor (VWF) levels in the plasma sample. The latex agglutination test can be performed qualitatively and semiquantitatively. Reproducibility, stability, linearity, limit of detection, interference, and method comparison studies were conducted to evaluate the performance of this test. Semiquantitative latex agglutination test was strongly correlated with the reference immunoturbidimetric assay (Spearman's rho = 0.946, P < 0.001, n = 132). A substantial agreement (κ = 0.77) was found between qualitative latex agglutination test and the reference assay. Using the scoring system for the rapid latex test, no agglutination is with 0% VWF : Ag (control negative), 1+ reaction is equivalent to <20% VWF : Ag, and 4+ reaction indicates >150% VWF : Ag (when comparing with immunoturbidimetric assay). The findings from evaluation studies suggest that latex agglutination method is suitable to be used as a rapid test kit for the estimation of VWF : Ag levels in various clinical conditions associated with high levels and low levels of VWF : Ag. PMID:25759835

  18. A Low Complexity Rapid Molecular Method for Detection of Clostridium difficile in Stool

    PubMed Central

    McElgunn, Cathal J.; Pereira, Clint R.; Parham, Nicholas J.; Smythe, James E.; Wigglesworth, Michael J.; Smielewska, Anna; Parmar, Surendra A.; Gandelman, Olga A.; Brown, Nicholas M.; Tisi, Laurence C.; Curran, Martin D.

    2014-01-01

    Here we describe a method for the detection of Clostridium difficile from stool using a novel low-complexity and rapid extraction process called Heat Elution (HE). The HE method is two-step and takes just 10 minutes, no specialist instruments are required and there is minimal hands-on time. A test method using HE was developed in conjunction with Loop-mediated Isothermal Amplification (LAMP) combined with the real-time bioluminescent reporter system known as BART targeting the toxin B gene (tcdB). The HE-LAMP-BART method was evaluated in a pilot study on clinical fecal samples (tcdB+, n =  111; tcdB−, n  = 107). The HE-LAMP-BART method showed 95.5% sensitivity and 100% specificity against a gold standard reference method using cytotoxigenic culture and also a silica-based robotic extraction followed by tcdB PCR to control for storage. From sample to result, the HE-LAMP-BART method typically took 50 minutes, whereas the PCR method took >2.5 hours. In a further study (tcdB+, n =  47; tcdB−, n  = 28) HE-LAMP-BART was compared to an alternative commercially available LAMP-based method, Illumigene (Meridian Bioscience, OH), and yielded 87.2% sensitivity and 100% specificity for the HE-LAMP-BART method compared to 76.6% and 100%, respectively, for Illumigene against the reference method. A subset of 27 samples (tcdB+, n =  25; tcdB−, n  = 2) were further compared between HE-LAMP-BART, Illumigene, GeneXpert (Cepheid, Sunnyvale, CA) and RIDA®QUICK C. difficile Toxin A/B lateral flow rapid test (R-Biopharm, Darmstadt, Germany) resulting in sensitivities of HE-LAMP-BART 92%, Illumigene 72% GeneXpert 96% and RIDAQuick 76% against the reference method. The HE-LAMP-BART method offers the advantages of molecular based approaches without the cost and complexity usually associated with molecular tests. Further, the rapid time-to-result and simple protocol means the method can be applied away from the centralized laboratory settings. PMID:24416173

  19. A low complexity rapid molecular method for detection of Clostridium difficile in stool.

    PubMed

    McElgunn, Cathal J; Pereira, Clint R; Parham, Nicholas J; Smythe, James E; Wigglesworth, Michael J; Smielewska, Anna; Parmar, Surendra A; Gandelman, Olga A; Brown, Nicholas M; Tisi, Laurence C; Curran, Martin D

    2014-01-01

    Here we describe a method for the detection of Clostridium difficile from stool using a novel low-complexity and rapid extraction process called Heat Elution (HE). The HE method is two-step and takes just 10 minutes, no specialist instruments are required and there is minimal hands-on time. A test method using HE was developed in conjunction with Loop-mediated Isothermal Amplification (LAMP) combined with the real-time bioluminescent reporter system known as BART targeting the toxin B gene (tcdB). The HE-LAMP-BART method was evaluated in a pilot study on clinical fecal samples (tcdB(+), n = 111; tcdB(-), n= 107). The HE-LAMP-BART method showed 95.5% sensitivity and 100% specificity against a gold standard reference method using cytotoxigenic culture and also a silica-based robotic extraction followed by tcdB PCR to control for storage. From sample to result, the HE-LAMP-BART method typically took 50 minutes, whereas the PCR method took >2.5 hours. In a further study (tcdB(+), n = 47; tcdB(-), n= 28) HE-LAMP-BART was compared to an alternative commercially available LAMP-based method, Illumigene (Meridian Bioscience, OH), and yielded 87.2% sensitivity and 100% specificity for the HE-LAMP-BART method compared to 76.6% and 100%, respectively, for Illumigene against the reference method. A subset of 27 samples (tcdB(+), n = 25; tcdB(-), n= 2) were further compared between HE-LAMP-BART, Illumigene, GeneXpert (Cepheid, Sunnyvale, CA) and RIDA®QUICK C. difficile Toxin A/B lateral flow rapid test (R-Biopharm, Darmstadt, Germany) resulting in sensitivities of HE-LAMP-BART 92%, Illumigene 72% GeneXpert 96% and RIDAQuick 76% against the reference method. The HE-LAMP-BART method offers the advantages of molecular based approaches without the cost and complexity usually associated with molecular tests. Further, the rapid time-to-result and simple protocol means the method can be applied away from the centralized laboratory settings. PMID:24416173

  20. Melting Temperature Mapping Method: A Novel Method for Rapid Identification of Unknown Pathogenic Microorganisms within Three Hours of Sample Collection

    PubMed Central

    Niimi, Hideki; Ueno, Tomohiro; Hayashi, Shirou; Abe, Akihito; Tsurue, Takahiro; Mori, Masashi; Tabata, Homare; Minami, Hiroshi; Goto, Michihiko; Akiyama, Makoto; Yamamoto, Yoshihiro; Saito, Shigeru; Kitajima, Isao

    2015-01-01

    Acquiring the earliest possible identification of pathogenic microorganisms is critical for selecting the appropriate antimicrobial therapy in infected patients. We herein report the novel “melting temperature (Tm) mapping method” for rapidly identifying the dominant bacteria in a clinical sample from sterile sites. Employing only seven primer sets, more than 100 bacterial species can be identified. In particular, using the Difference Value, it is possible to identify samples suitable for Tm mapping identification. Moreover, this method can be used to rapidly diagnose the absence of bacteria in clinical samples. We tested the Tm mapping method using 200 whole blood samples obtained from patients with suspected sepsis, 85% (171/200) of which matched the culture results based on the detection level. A total of 130 samples were negative according to the Tm mapping method, 98% (128/130) of which were also negative based on the culture method. Meanwhile, 70 samples were positive according to the Tm mapping method, and of the 59 suitable for identification, 100% (59/59) exhibited a “match” or “broad match” with the culture or sequencing results. These findings were obtained within three hours of whole blood collection. The Tm mapping method is therefore useful for identifying infectious diseases requiring prompt treatment. PMID:26218169

  1. Interactive Rapid Dose Assessment Model (IRDAM): reactor-accident assessment methods. Vol. 2

    SciTech Connect

    Poeton, R.W.; Moeller, M.P.; Laughlin, G.J.; Desrosiers, A.E.

    1983-05-01

    As part of the continuing emphasis on emergency preparedness, the US Nuclear Regulatory Commission (NRC) sponsored the development of a rapid dose assessment system by Pacific Northwest Laboratory (PNL). This system, the Interactive Rapid Dose Assessment Model (IRDAM) is a micro-computer based program for rapidly assessing the radiological impact of accidents at nuclear power plants. This document describes the technical bases for IRDAM including methods, models and assumptions used in calculations. IRDAM calculates whole body (5-cm depth) and infant thyroid doses at six fixed downwind distances between 500 and 20,000 meters. Radionuclides considered primarily consist of noble gases and radioiodines. In order to provide a rapid assessment capability consistent with the capacity of the Osborne-1 computer, certain simplifying approximations and assumptions are made. These are described, along with default values (assumptions used in the absence of specific input) in the text of this document. Two companion volumes to this one provide additional information on IRDAM. The user's Guide (NUREG/CR-3012, Volume 1) describes the setup and operation of equipment necessary to run IRDAM. Scenarios for Comparing Dose Assessment Models (NUREG/CR-3012, Volume 3) provides the results of calculations made by IRDAM and other models for specific accident scenarios.

  2. A rapid and enhanced DNA detection method for crop cultivar discrimination.

    PubMed

    Monden, Yuki; Takasaki, Kazuto; Futo, Satoshi; Niwa, Kousuke; Kawase, Mitsuo; Akitake, Hiroto; Tahara, Makoto

    2014-09-20

    In many crops species, the development of a rapid and precise cultivar discrimination system has been required for plant breeding and patent protection of plant cultivars and agricultural products. Here, we successfully evaluated strawberry cultivars via a novel method, namely, the single tag hybridization (STH) chromatographic printed array strip (PAS) using the PCR products of eight genomic regions. In a previous study, we showed that genotyping of eight genomic regions derived from FaRE1 retrotransposon insertion site enabled to discriminate 32 strawberry cultivars precisely, however, this method required agarose/acrylamide gel electrophoresis, thus has the difficulty for practical application. In contrast, novel DNA detection method in this study has some great advantages over standard DNA detection methods, including agarose/acrylamide gel electrophoresis, because it produces signals for DNA detection with dramatically higher sensitivity in a shorter time without any preparation or staining of a gel. Moreover, this method enables the visualization of multiplex signals simultaneously in a single reaction using several independent amplification products. We expect that this novel method will become a rapid and convenient cultivar screening assay for practical purposes, and will be widely applied to various situations, including laboratory research, and on-site inspection of plant cultivars and agricultural products. PMID:24954682

  3. Rapid method to detect duplex formation in sequencing by hybridization methods

    DOEpatents

    Mirzabekov, A.D.; Timofeev, E.N.; Florentiev, V.L.; Kirillov, E.V.

    1999-01-19

    A method for determining the existence of duplexes of oligonucleotide complementary molecules is provided. A plurality of immobilized oligonucleotide molecules, each of a specific length and each having a specific base sequence, is contacted with complementary, single stranded oligonucleotide molecules to form a duplex. Each duplex facilitates intercalation of a fluorescent dye between the base planes of the duplex. The invention also provides for a method for constructing oligonucleotide matrices comprising confining light sensitive fluid to a surface and exposing the light-sensitive fluid to a light pattern. This causes the fluid exposed to the light to coalesce into discrete units and adhere to the surface. This places each of the units in contact with a set of different oligonucleotide molecules so as to allow the molecules to disperse into the units. 13 figs.

  4. Rapid method to detect duplex formation in sequencing by hybridization methods

    DOEpatents

    Mirzabekov, Andrei Darievich; Timofeev, Edward Nikolaevich; Florentiev, Vladimer Leonidovich; Kirillov, Eugene Vladislavovich

    1999-01-01

    A method for determining the existence of duplexes of oligonucleotide complementary molecules is provided whereby a plurality of immobilized oligonucleotide molecules, each of a specific length and each having a specific base sequence, is contacted with complementary, single stranded oligonucleotide molecules to form a duplex so as to facilitate intercalation of a fluorescent dye between the base planes of the duplex. The invention also provides for a method for constructing oligonucleotide matrices comprising confining light sensitive fluid to a surface, exposing said light-sensitive fluid to a light pattern so as to cause the fluid exposed to the light to coalesce into discrete units and adhere to the surface; and contacting each of the units with a set of different oligonucleotide molecules so as to allow the molecules to disperse into the units.

  5. [A new, automatic, non-radiometric system for culturing MB/BACT bacilli and its value in the microbiologic diagnosis of tuberculosis].

    PubMed

    Zofia, Z; Augustynowicz-Kopeć, E; Klatt, M

    1998-01-01

    The MB/BacT is a fully automated, rapid, non-radiometric system, for the culture of Mycobacteria for clinical samples other than blood. CO2 production is measured and reported as reflective units from the MB/BacT Process Bottle colorimetric sensor. We are evaluating the MB/BacT system in comparison to our routine culture method--culture on egg media (glycerol and puruvate), in the Bactec 460-Tb radiometric machine and in MB Redox. A total of 286 clinical samples from respiratory tract were inoculated into three or four culture systems and incubated at 37 degrees C. There was only little difference in mean time to detection between the MB/BacT and Bactec system (for M.tuberculosis 11 days versus 9 days), but both systems were faster than egg media (16 days). Contamination rates for MB/BacT system was 8.4%, and for Bactec 6.9%. The colorimetric technology used in the MB/BacT is a rapid and sensitive for the measurement of mycobacterial growth. PMID:9658878

  6. Development of a five-hour radiometric serum antibacterial assay for gram-positive cocci

    SciTech Connect

    Beckwith, D.G.; Guidon, P.T. Jr.

    1981-03-01

    A preliminary report on a 5-hr radiometric serum antibacterial assay (ABA) for Gram-positive cocci is presented. The method agreed within +- one twofold dilution with static ABA endpoints in 24/26 (92%) of the assays and with cidal ABA end-points in 23/26 (88%) of the assays performed.

  7. A rapid chemical odour profiling method for the identification of rhinoceros horns.

    PubMed

    Ueland, Maiken; Ewart, Kyle; Troobnikoff, Amanda N; Frankham, Greta; Johnson, Rebecca N; Forbes, Shari L

    2016-09-01

    Illegal poaching causes great harm to species diversity and conservation. A vast amount of money is involved in the trade of illegal or forged animal parts worldwide. In many cases, the suspected animal part is unidentifiable and requires costly and invasive laboratory analysis such as isotopic fingerprinting or DNA testing. The lack of rapid and accurate methods to identify wildlife parts at the point of detection represents a major hindrance in the enforcement and prosecution of wildlife trafficking. The ability of wildlife detector dogs to alert to different wildlife species demonstrates that there is a detectable difference in scent profile of illegally traded animal parts. This difference was exploited to develop a rapid, non-invasive screening method for distinguishing rhinoceros horns of different species. The method involved the collection of volatile organic compounds (VOC) by headspace solid-phase microextraction (HS-SPME) and analysis by comprehensive two-dimensional gas chromatography - time-of-flight mass spectrometry (GC×GC-TOFMS). It was hypothesised that the use of the specific odour profile as a screening method could separate and differentiate geographic origin or exploit the difference in diets of different species within a family (such as white rhinoceros and black rhinoceros from the Rhinocerotidae family). Known black and white rhinoceros horn samples were analysed using HS-SPME-GC×GC-TOFMS and multivariate statistics were applied to identify groupings in the data set. The black rhinoceros horn samples were distinctly different from the white rhinoceros horn samples. This demonstrated that seized rhinoceros horn samples can be identified based on their distinct odour profiles. The chemical odour profiling method has great potential as a rapid and non-invasive screening method in order to combat and track illegal trafficking of wildlife parts. PMID:27240958

  8. A Microfluidic Channel Method for Rapid Drug-Susceptibility Testing of Pseudomonas aeruginosa

    PubMed Central

    Matsumoto, Yoshimi; Grushnikov, Andrey; Kikuchi, Kazuma; Noji, Hiroyuki; Yamaguchi, Akihito; Yagi, Yasushi

    2016-01-01

    The recent global increase in the prevalence of antibiotic-resistant bacteria and lack of development of new therapeutic agents emphasize the importance of selecting appropriate antimicrobials for the treatment of infections. However, to date, the development of completely accelerated drug susceptibility testing methods has not been achieved despite the availability of a rapid identification method. We proposed an innovative rapid method for drug susceptibility testing for Pseudomonas aeruginosa that provides results within 3 h. The drug susceptibility testing microfluidic (DSTM) device was prepared using soft lithography. It consisted of five sets of four microfluidic channels sharing one inlet slot, and the four channels are gathered in a small area, permitting simultaneous microscopic observation. Antimicrobials were pre-introduced into each channel and dried before use. Bacterial suspensions in cation-adjusted Mueller–Hinton broth were introduced from the inlet slot and incubated for 3 h. Susceptibilities were microscopically evaluated on the basis of differences in cell numbers and shapes between drug-treated and control cells, using dedicated software. The results of 101 clinically isolated strains of P. aeruginosa obtained using the DSTM method strongly correlated with results obtained using the ordinary microbroth dilution method. Ciprofloxacin, meropenem, ceftazidime, and piperacillin caused elongation in susceptible cells, while meropenem also induced spheroplast and bulge formation. Morphological observation could alternatively be used to determine the susceptibility of P. aeruginosa to these drugs, although amikacin had little effect on cell shape. The rapid determination of bacterial drug susceptibility using the DSTM method could also be applicable to other pathogenic species, and it could easily be introduced into clinical laboratories without the need for expensive instrumentation. PMID:26872134

  9. A Microfluidic Channel Method for Rapid Drug-Susceptibility Testing of Pseudomonas aeruginosa.

    PubMed

    Matsumoto, Yoshimi; Sakakihara, Shouichi; Grushnikov, Andrey; Kikuchi, Kazuma; Noji, Hiroyuki; Yamaguchi, Akihito; Iino, Ryota; Yagi, Yasushi; Nishino, Kunihiko

    2016-01-01

    The recent global increase in the prevalence of antibiotic-resistant bacteria and lack of development of new therapeutic agents emphasize the importance of selecting appropriate antimicrobials for the treatment of infections. However, to date, the development of completely accelerated drug susceptibility testing methods has not been achieved despite the availability of a rapid identification method. We proposed an innovative rapid method for drug susceptibility testing for Pseudomonas aeruginosa that provides results within 3 h. The drug susceptibility testing microfluidic (DSTM) device was prepared using soft lithography. It consisted of five sets of four microfluidic channels sharing one inlet slot, and the four channels are gathered in a small area, permitting simultaneous microscopic observation. Antimicrobials were pre-introduced into each channel and dried before use. Bacterial suspensions in cation-adjusted Mueller-Hinton broth were introduced from the inlet slot and incubated for 3 h. Susceptibilities were microscopically evaluated on the basis of differences in cell numbers and shapes between drug-treated and control cells, using dedicated software. The results of 101 clinically isolated strains of P. aeruginosa obtained using the DSTM method strongly correlated with results obtained using the ordinary microbroth dilution method. Ciprofloxacin, meropenem, ceftazidime, and piperacillin caused elongation in susceptible cells, while meropenem also induced spheroplast and bulge formation. Morphological observation could alternatively be used to determine the susceptibility of P. aeruginosa to these drugs, although amikacin had little effect on cell shape. The rapid determination of bacterial drug susceptibility using the DSTM method could also be applicable to other pathogenic species, and it could easily be introduced into clinical laboratories without the need for expensive instrumentation. PMID:26872134

  10. INTRABAND RADIOMETRIC PERFORMANCE OF THE LANDSAT 4 THEMATIC MAPPER.

    USGS Publications Warehouse

    Kieffer, Hugh H.; Eliason, Eric M.; Chavez, Pat S., Jr.

    1985-01-01

    This preliminary report examines those radiometric characteristics of the Landsat 4 Thematic Mapper (TM) that can be established without absolute calibration of spectral data. Analysis is based largely on radiometrically raw (B type) data of three daytime and two nighttime scenes; in most scenes, a set of 512 lines were examined on an individual-detector basis. Subscenes selected for uniform-radiance were used to characterize subtle radiometric differences and noise problems.

  11. A rapid and efficient method for DNA extraction from paraffin wax embedded tissue for PCR amplification

    PubMed Central

    Morgan, Kevin; Lam, Letty; Kalsheker, Noor

    1996-01-01

    DNA from archival, formaldehyde fixed, paraffin wax embedded human tissue, suitable for amplification by the polymerase chain reaction (PCR), was obtained using a microwave method based on the capture of DNA by magnetic beads. Fragments of the α-1-antitrypsin gene (AAT) and the apolipoprotein E gene (APOE) were amplified successfully from human liver and brain tissue, respectively. This procedure provides a more rapid, simple and efficient method for reproducibly obtaining DNA from preserved tissue that has been kept in storage for up to 30 years. Images PMID:16696069

  12. A rapid method for the computation of equilibrium chemical composition of air to 15000 K

    NASA Technical Reports Server (NTRS)

    Prabhu, Ramadas K.; Erickson, Wayne D.

    1988-01-01

    A rapid computational method has been developed to determine the chemical composition of equilibrium air to 15000 K. Eleven chemically reacting species, i.e., O2, N2, O, NO, N, NO+, e-, N+, O+, Ar, and Ar+ are included. The method involves combining algebraically seven nonlinear equilibrium equations and four linear elemental mass balance and charge neutrality equations. Computational speeds for determining the equilibrium chemical composition are significantly faster than the often used free energy minimization procedure. Data are also included from which the thermodynamic properties of air can be computed. A listing of the computer program together with a set of sample results are included.

  13. Rapid method for selecting appropriate solid media for the enumeration of aerobic micro-organisms.

    PubMed

    Richard, J; Andersen, H M; Gratadoux, J J

    1983-06-01

    A quick and cheap method for selecting appropriate solid culture media has been devised. It consists in the rapid picking of fragments of test colonies with the aid of a rubber strip in which pins are fixed in parallel, dispensing up to 8 colonies simultaneously in the wells of a Microtiter plate and streaking 4 strains at the same time on square Petri dishes containing the media under comparison. The approximate diameters of well-isolated colonies are measured with the aid of a series of calibrated spots. The results corresponded with those given by the spiral plate method used as a reference for colony count and diameter measure. PMID:6348013

  14. Polymerase Chain Reaction/Rapid Methods Are Gaining a Foothold in Developing Countries.

    PubMed

    Ragheb, Suzan Mohammed; Jimenez, Luis

    Detection of microbial contamination in pharmaceutical raw materials and finished products is a critical factor to guarantee their safety, stability, and potency. Rapid microbiological methods-such as polymerase chain reaction-have been widely applied to clinical and food quality control analysis. However, polymerase chain reaction applications to pharmaceutical quality control have been rather slow and sporadic. Successful implementation of these methods in pharmaceutical companies in developing countries requires important considerations to provide sensitive and robust assays that will comply with good manufacturing practices. PMID:25188346

  15. Comparison of concentration methods for rapid detection of hookworm ova in wastewater matrices using quantitative PCR.

    PubMed

    Gyawali, P; Ahmed, W; Jagals, P; Sidhu, J P S; Toze, S

    2015-12-01

    Hookworm infection contributes around 700 million infections worldwide especially in developing nations due to increased use of wastewater for crop production. The effective recovery of hookworm ova from wastewater matrices is difficult due to their low concentrations and heterogeneous distribution. In this study, we compared the recovery rates of (i) four rapid hookworm ova concentration methods from municipal wastewater, and (ii) two concentration methods from sludge samples. Ancylostoma caninum ova were used as surrogate for human hookworm (Ancylostoma duodenale and Necator americanus). Known concentration of A. caninum hookworm ova were seeded into wastewater (treated and raw) and sludge samples collected from two wastewater treatment plants (WWTPs) in Brisbane and Perth, Australia. The A. caninum ova were concentrated from treated and raw wastewater samples using centrifugation (Method A), hollow fiber ultrafiltration (HFUF) (Method B), filtration (Method C) and flotation (Method D) methods. For sludge samples, flotation (Method E) and direct DNA extraction (Method F) methods were used. Among the four methods tested, filtration (Method C) method was able to recover higher concentrations of A. caninum ova consistently from treated wastewater (39-50%) and raw wastewater (7.1-12%) samples collected from both WWTPs. The remaining methods (Methods A, B and D) yielded variable recovery rate ranging from 0.2 to 40% for treated and raw wastewater samples. The recovery rates for sludge samples were poor (0.02-4.7), although, Method F (direct DNA extraction) provided 1-2 orders of magnitude higher recovery rate than Method E (flotation). Based on our results it can be concluded that the recovery rates of hookworm ova from wastewater matrices, especially sludge samples, can be poor and highly variable. Therefore, choice of concentration method is vital for the sensitive detection of hookworm ova in wastewater matrices. PMID:26358269

  16. Radiometric instrumentation and measurements guide for photovoltaic performance testing

    SciTech Connect

    Myers, D.

    1997-04-01

    The Photovoltaic Module and Systems Performance and Engineering Project at the National Renewable Energy Laboratory performs indoor and outdoor standardization, testing, and monitoring of the performance of a wide range of photovoltaic (PV) energy conversion devices and systems. The PV Radiometric Measurements and Evaluation Team (PVSRME) within that project is responsible for measurement and characterization of natural and artificial optical radiation which stimulates the PV effect. The PV manufacturing and research and development community often approaches project members for technical information and guidance. A great area of interest is radiometric instrumentation, measurement techniques, and data analysis applied to understanding and improving PV cell, module, and system performance. At the Photovoltaic Radiometric Measurements Workshop conducted by the PVSRME team in July 1995, the need to communicate knowledge of solar and optical radiometric measurements and instrumentation, gained as a result of NREL`s long-term experiences, was identified as an activity that would promote improved measurement processes and measurement quality in the PV research and manufacturing community. The purpose of this document is to address the practical and engineering need to understand optical and solar radiometric instrument performance, selection, calibration, installation, and maintenance applicable to indoor and outdoor radiometric measurements for PV calibration, performance, and testing applications. An introductory section addresses radiometric concepts and definitions. Next, concepts essential to spectral radiometric measurements are discussed. Broadband radiometric instrumentation and measurement concepts are then discussed. Each type of measurement serves as an important component of the PV cell, module, and system performance measurement and characterization process.

  17. A Rapid and Economical Method for Efficient DNA Extraction from Diverse Soils Suitable for Metagenomic Applications

    PubMed Central

    Devi, Selvaraju Gayathri; Fathima, Anwar Aliya; Radha, Sudhakar; Arunraj, Rex; Curtis, Wayne R.; Ramya, Mohandass

    2015-01-01

    A rapid, cost effective method of metagenomic DNA extraction from soil is a useful tool for environmental microbiology. The present work describes an improved method of DNA extraction namely “powdered glass method” from diverse soils. The method involves the use of sterile glass powder for cell lysis followed by addition of 1% powdered activated charcoal (PAC) as purifying agent to remove humic substances. The method yielded substantial DNA (5.87 ± 0.04 μg/g of soil) with high purity (A260/280: 1.76 ± 0.05) and reduced humic substances (A340: 0.047 ± 0.03). The quality of the extracted DNA was compared against five different methods based on 16S rDNA PCR amplification, BamHI digestion and validated using quantitative PCR. The digested DNA was used for a metagenomic library construction with the transformation efficiency of 4 X 106 CFU mL-1. Besides providing rapid, efficient and economical extraction of metgenomic DNA from diverse soils, this method’s applicability is also demonstrated for cultivated organisms (Gram positive B. subtilis NRRL-B-201, Gram negative E. coli MTCC40, and a microalgae C. sorokiniana UTEX#1666). PMID:26167854

  18. Novel method for rapid identification of Nocardia species by detection of preformed enzymes.

    PubMed Central

    Biehle, J R; Cavalieri, S J; Felland, T; Zimmer, B L

    1996-01-01

    The purpose of the present study was to devise a method for the identification of Nocardia species that is more technically simple, accurate, and rapid than current standard methods of identification. We focused on a commercial bacteria identification system that contained chromogenic test substrates. Two MicroScan products were selected for use in the study on the basis of their content of chromogenic and conventional substrates. They were the Rapid Anaerobe Identification and the HNID panels. A total of 85 strains of Nocardia representing five species were used in the study. All isolates were identified as Nocardia species by the use of standard methods. The beta-naphthylamide-labeled substrate L-pyrrolidonyl-beta-naphthylamide (PYR), the nitrophenyl-labeled substrate p-nitrophenyl-alpha-D-mannopyranoside (MNP), and indoxyl phosphate were found to be useful for identification purposes. N. farcinica and N. nova were the only species positive for PYR, whereas N. brasiliensis was the only species that hydrolyzed MNP. All strains of N. brasiliensis, N. otitidiscavarium, and N. farcinica were positive for indoxyl phosphate, whereas strains of N. nova and N. asteroides sensu stricto were always negative. Agreement between the standard and enzymatic identification methods was 100%. In summary, detection of preformed enzymes appears to be a simple and reproducible method for the identification of Nocardia spp. PMID:8748283

  19. Rapid methods to detect organic mercury and total selenium in biological samples

    PubMed Central

    2011-01-01

    Background Organic mercury (Hg) is a global pollutant of concern and selenium is believed to afford protection against mercury risk though few approaches exist to rapidly assess both chemicals in biological samples. Here, micro-scale and rapid methods to detect organic mercury (< 1.5 ml total sample volume, < 1.5 hour) and total selenium (Se; < 3.0 ml total volume, < 3 hour) from a range of biological samples (10-50 mg) are described. Results For organic Hg, samples are digested using Tris-HCl buffer (with sequential additions of protease, NaOH, cysteine, CuSO4, acidic NaBr) followed by extraction with toluene and Na2S2O3. The final product is analyzed via commercially available direct/total mercury analyzers. For Se, a fluorometric assay has been developed for microplate readers that involves digestion (HNO3-HClO4 and HCl), conjugation (2,3-diaminonaphthalene), and cyclohexane extraction. Recovery of organic Hg (86-107%) and Se (85-121%) were determined through use of Standard Reference Materials and lemon shark kidney tissues. Conclusions The approaches outlined provide an easy, rapid, reproducible, and cost-effective platform for monitoring organic Hg and total Se in biological samples. Owing to the importance of organic Hg and Se in the pathophysiology of Hg, integration of such methods into established research monitoring efforts (that largely focus on screening total Hg only) will help increase understanding of Hg's true risks. PMID:21232132

  20. A rapid method for counting nucleated erythrocytes on stained blood smears by digital image analysis

    USGS Publications Warehouse

    Gering, E.; Atkinson, C.T.

    2004-01-01

    Measures of parasitemia by intraerythrocytic hematozoan parasites are normally expressed as the number of infected erythrocytes per n erythrocytes and are notoriously tedious and time consuming to measure. We describe a protocol for generating rapid counts of nucleated erythrocytes from digital micrographs of thin blood smears that can be used to estimate intensity of hematozoan infections in nonmammalian vertebrate hosts. This method takes advantage of the bold contrast and relatively uniform size and morphology of erythrocyte nuclei on Giemsa-stained blood smears and uses ImageJ, a java-based image analysis program developed at the U.S. National Institutes of Health and available on the internet, to recognize and count these nuclei. This technique makes feasible rapid and accurate counts of total erythrocytes in large numbers of microscope fields, which can be used in the calculation of peripheral parasitemias in low-intensity infections.

  1. An extended area blackbody for radiometric calibration

    NASA Astrophysics Data System (ADS)

    LaVeigne, Joe; Franks, Greg; Singer, Jake; Arenas, D. J.; McHugh, Steve

    2013-06-01

    SBIR is developing an enhanced blackbody for improved radiometric testing. The main feature of the blackbody is an improved coating with higher emissivity than the standard coating used. Comparative measurements of the standard and improved coatings are reported, including reflectance. The coatings were also tested with infrared imagers and a broadband emissivity estimate derived from the imagery data. In addition, a control algorithm for constant slew rate has been implemented, primarily for use in minimum resolvable temperature measurements. The system was tested over a range of slew rates from 0.05 K/min to 10 K/min and its performance reported.

  2. Radiometric stability of Phase 3 WISP arrays

    NASA Astrophysics Data System (ADS)

    Flynn, David S.; Marlow, Steven A.; Bergin, Thomas P.; Murrer, Robert Lee

    2000-07-01

    Phase 3 WISP arrays and BRITE arrays are currently being used extensively in many projection systems in many different facilities. These arrays have not been annealed at the factory, and previous tests with the arrays have revealed instabilities in the radiometric output when the arrays are driven at higher voltages. In some applications, the instabilities can be avoided by operating the arrays at lower voltages. In many KHILS applications, it is desirable to drive the arrays with the highest possible voltages to simulate hot missile targets. In one KHILS application (the KHILS VAcuum Cold Chamber, KVACC), the arrays are cooled to near cryogenic temperatures and then driven to high voltages. At lower substrate temperatures, the characteristic responses of the emitters change. Thus, it is important that the response and the stability of the radiometric output of the arrays be well understood for various substrate temperatures, and that the arrays either be annealed or operated below the voltage where the emitters begin to anneal. KHILS has investigated annealing procedures in the past, but there was concern that the annealing procedures themselves -- driving the arrays at high voltages for long times -- would damage the arrays. In order to understand the performance of the arrays better, and to reduce risks associated with driving the arrays at high voltages and operating the arrays at low substrate temperatures, a systematic measurement program was initiated. The radiometric output of new Phase 3 WISP arrays was accurately measured as a function of voltage and time. Arrays designated for testing were driven to the higher voltages and the radiometric output was measured for as long as two hours. Curves indicative of the annealing were observed, and it was determined that the maximum stable output without annealing was about 500 K (MWIR apparent temperature). Blocks of emitters were annealed and tested again. It was determined that stable output of as much as 680 K

  3. Rapid microplate, green method for high-throughput evaluation of vinegar acidity using thermal infrared enthalpimetry.

    PubMed

    Tischer, Bruna; Oliveira, Alessandra Stangherlin; Ferreira, Daniele de Freitas; Menezes, Cristiano Ragagnin; Duarte, Fábio Andrei; Wagner, Roger; Barin, Juliano Smanioto

    2017-01-15

    Infrared thermal imaging was combined with disposable microplates to perform enthalpimetric analysis using an infrared camera to monitor temperature without contact. The proposed thermal infrared enthalpimetry (TIE) method was used to determine the total, fixed and volatile acidities of vinegars. Sample preparation and analysis were performed in the same vessel, avoiding excessive sample handling and reducing energy expenditure by more than ten times. The results agreed with those of the conventional method for different kinds of vinegars, with values of 1.7%, and 2.3% for repeatability and intermediate precision, respectively. A linear calibration curve was obtained from 0.040 to 1.30molL(-1). The proposed method provided rapid results (within 10s) for four samples simultaneously, a sample throughput of up to 480 samples per hour. In addition, the method complies with at least eight of twelve recommendations for green analytical chemistry, making TIE a promising tool for routine vinegar analysis. PMID:27542445

  4. A rapid method for the nonselective enumeration of Yersinia enterocolitica, a foodborne pathogen associated with pork.

    PubMed

    Wang, Haoran; Palmer, Jon; Flint, Steve

    2016-03-01

    An impedance method was developed as a rapid, convenient method to enumerate pure culture of Yersinia enterocolitica. Cultures were incubated in trypticase soy broth (TSB) at 30°C. The BacTrac™ 4000 microorganism growth analyser was used to detect impedance change of TSB representing bacteria cell numbers in the samples. Good correlations with standard plate counts were obtained (r(2)>0.95). This method is also reliable to enumerate Y. enterocolitica growing in biofilms attached to stainless steel. Compared with a standard plate count which involves dislodging biofilms from surfaces, this method is more convenient saving both time and effort. Therefore, it will be useful to study the conditions required for the biofilm growth and control of Y. enterocolitica that could be applied to the pork industry. PMID:26613189

  5. Measuring acoustic energy density in microchannel acoustophoresis using a simple and rapid light-intensity method.

    PubMed

    Barnkob, Rune; Iranmanesh, Ida; Wiklund, Martin; Bruus, Henrik

    2012-07-01

    We present a simple and rapid method for measuring the acoustic energy density in microchannel acoustophoresis based on light-intensity measurements of a suspension of particles. The method relies on the assumption that each particle in the suspension undergoes single-particle acoustophoresis. It is validated by the single-particle tracking method, and we show by proper re-scaling that the re-scaled light intensity plotted versus re-scaled time falls on a universal curve. The method allows for analysis of moderate-resolution images in the concentration range encountered in typical experiments, and it is an attractive alternative to particle tracking and particle image velocimetry for quantifying acoustophoretic performance in microchannels. PMID:22522812

  6. Comparison of rapid methods for chemical analysis of milligram samples of ultrafine clays.

    USGS Publications Warehouse

    Rettig, S.L.; Marinenko, J.W.; Khoury, H.N.; Jones, B.F.

    1983-01-01

    Two rapid methods for the decomposition and chemical analysis of clays were adapted for use with 20-40mg size samples, typical amounts of ultrafine products (< 0.5 micrometer diameter) obtained from modern separation methods for clay minrals. The results of these methods were compared with those of 'classical' rock analyses. The two methods consisted of mixed lithium metaborate fusion and heated decomposition with HF in a closed vessel. The latter technique was modified to include subsequent evaporation with concentrated H2SO4 and re-solution in HCl, which reduced the interference of the fluoride ion in the determination of Al, Fe, Ca, Mg, Na, and K.-from Authors

  7. Rapid quantification of microalgal lipids in aqueous medium by a simple colorimetric method.

    PubMed

    Mishra, Sanjiv K; Suh, William I; Farooq, Wasif; Moon, Myounghoon; Shrivastav, Anupama; Park, Min S; Yang, Ji-Won

    2014-03-01

    Identification of novel microalgal strains with high lipid productivity is one of the most important research topics in renewable biofuel research. However, the major bottleneck in the strain screening process is that currently known methods for the estimation of microalgal lipid are laborious and time-consuming. The present study successfully employed sulpho-phospho-vanillin (SPV) colorimetric method for direct quantitative measurement of lipids within liquid microalgal culture. The SPV reacts with lipids to produce a distinct pink color, and its intensity can be quantified using spectrophotometric methods by measuring absorbance at 530nm. This method was employed for a rapid quantification of intracellular lipid contents within Chlorella sp., Monoraphidium sp., Ettlia sp. and Nannochloropsis sp., all of which were found to have lipid contents ranging in between 10% and 30%. Subsequent analysis of the biomass using gas chromatography confirmed that our protocol is highly accurate (R(2)=0.99). PMID:24463407

  8. New Sentinel-2 radiometric validation approaches (SEOM program)

    NASA Astrophysics Data System (ADS)

    Bruniquel, Véronique; Lamquin, Nicolas; Ferron, Stéphane; Govaerts, Yves; Woolliams, Emma; Dilo, Arta; Gascon, Ferran

    2016-04-01

    SEOM is an ESA program element whose one of the objectives aims at launching state-of-the-art studies for the scientific exploitation of operational missions. In the frame of this program, ESA awarded ACRI-ST and its partners Rayference and National Physical Laboratory (NPL) early 2016 for a R&D study on the development and intercomparison of algorithms for validating the Sentinel-2 radiometric L1 data products beyond the baseline algorithms used operationally in the frame of the S2 Mission Performance Centre. In this context, several algorithms have been proposed and are currently in development: The first one is based on the exploitation of Deep Convective Cloud (DCC) observations over ocean. This method allows an inter-band radiometry validation from the blue to the NIR (typically from B1 to B8a) from a reference band already validated for example with the well-known Rayleigh method. Due to their physical properties, DCCs appear from the remote sensing point of view to have bright and cold tops and they can be used as invariant targets to monitor the radiometric response degradation of reflective solar bands. The DCC approach is statistical i.e. the method shall be applied on a large number of measurements to derive reliable statistics and decrease the impact of the perturbing contributors. The second radiometric validation method is based on the exploitation of matchups combining both concomitant in-situ measurements and Sentinel-2 observations. The in-situ measurements which are used here correspond to measurements acquired in the frame of the RadCalNet networks. The validation is performed for the Sentinel-2 bands similar to the bands of the instruments equipping the validation site. The measurements from the Cimel CE 318 12-filters BRDF Sun Photometer installed recently in the Gobabeb site near the Namib desert are used for this method. A comprehensive verification of the calibration requires an analysis of MSI radiances over the full dynamic range

  9. Rapid-Viability PCR Method for Detection of Live, Virulent Bacillus anthracis in Environmental Samples ▿

    PubMed Central

    Létant, Sonia E.; Murphy, Gloria A.; Alfaro, Teneile M.; Avila, Julie R.; Kane, Staci R.; Raber, Ellen; Bunt, Thomas M.; Shah, Sanjiv R.

    2011-01-01

    In the event of a biothreat agent release, hundreds of samples would need to be rapidly processed to characterize the extent of contamination and determine the efficacy of remediation activities. Current biological agent identification and viability determination methods are both labor- and time-intensive such that turnaround time for confirmed results is typically several days. In order to alleviate this issue, automated, high-throughput sample processing methods were developed in which real-time PCR analysis is conducted on samples before and after incubation. The method, referred to as rapid-viability (RV)-PCR, uses the change in cycle threshold after incubation to detect the presence of live organisms. In this article, we report a novel RV-PCR method for detection of live, virulent Bacillus anthracis, in which the incubation time was reduced from 14 h to 9 h, bringing the total turnaround time for results below 15 h. The method incorporates a magnetic bead-based DNA extraction and purification step prior to PCR analysis, as well as specific real-time PCR assays for the B. anthracis chromosome and pXO1 and pXO2 plasmids. A single laboratory verification of the optimized method applied to the detection of virulent B. anthracis in environmental samples was conducted and showed a detection level of 10 to 99 CFU/sample with both manual and automated RV-PCR methods in the presence of various challenges. Experiments exploring the relationship between the incubation time and the limit of detection suggest that the method could be further shortened by an additional 2 to 3 h for relatively clean samples. PMID:21764960

  10. Note: Non-invasive optical method for rapid determination of alignment degree of oriented nanofibrous layers

    NASA Astrophysics Data System (ADS)

    Pokorny, M.; Klemes, J.; Rebicek, J.; Kotzianova, A.; Velebny, V.

    2015-10-01

    This paper presents a rapid non-destructive method that provides information on the anisotropic internal structure of nanofibrous layers. A laser beam of a wavelength of 632.8 nm is directed at and passes through a nanofibrous layer prepared by electrostatic spinning. Information about the structural arrangement of nanofibers in the layer is directly visible in the form of a diffraction image formed on a projection screen or obtained from measured intensities of the laser beam passing through the sample which are determined by the dependency of the angle of the main direction of polarization of the laser beam on the axis of alignment of nanofibers in the sample. Both optical methods were verified on Polyvinyl alcohol (PVA) nanofibrous layers (fiber diameter of 470 nm) with random, single-axis aligned and crossed structures. The obtained results match the results of commonly used methods which apply the analysis of electron microscope images. The presented simple method not only allows samples to be analysed much more rapidly and without damaging them but it also makes possible the analysis of much larger areas, up to several square millimetres, at the same time.

  11. Note: Non-invasive optical method for rapid determination of alignment degree of oriented nanofibrous layers

    SciTech Connect

    Pokorny, M.; Rebicek, J.; Klemes, J.; Kotzianova, A.; Velebny, V.

    2015-10-15

    This paper presents a rapid non-destructive method that provides information on the anisotropic internal structure of nanofibrous layers. A laser beam of a wavelength of 632.8 nm is directed at and passes through a nanofibrous layer prepared by electrostatic spinning. Information about the structural arrangement of nanofibers in the layer is directly visible in the form of a diffraction image formed on a projection screen or obtained from measured intensities of the laser beam passing through the sample which are determined by the dependency of the angle of the main direction of polarization of the laser beam on the axis of alignment of nanofibers in the sample. Both optical methods were verified on Polyvinyl alcohol (PVA) nanofibrous layers (fiber diameter of 470 nm) with random, single-axis aligned and crossed structures. The obtained results match the results of commonly used methods which apply the analysis of electron microscope images. The presented simple method not only allows samples to be analysed much more rapidly and without damaging them but it also makes possible the analysis of much larger areas, up to several square millimetres, at the same time.

  12. Evaluation of a rapid headspace analysis method for analysis of volatile constituents in soils and sediments

    SciTech Connect

    Sims, W.R.; Looney, B.B.; Eddy, C.A.

    1991-12-31

    Contamination of the subsurface by volatile organic solvents is a common and significant environmental problem. A critical component of developing an accurate assessment of a site contaminated by these solvents is the acquisition of closely spaced, high quality contaminant concentration data. Many volatile organics are relatively mobile in the subsurface, requiring characterization of both horizontal and vertical contaminant migration. The volatile nature of these analyses, combined with the cost and effort typically required to perform quantitative analysis, has often compromised the number of quality of analyses used in characterization studies. A headspace analysis method was developed by Savannah River Laboratory to facilitate accurate and rapid delineation of the vertical and horizontal extent of volatile organic contamination in the subsurface. The method was designed to reduce sample handling, laboratory preparation, and analytical complexity. Detection and delineation of volatile organic solvent contamination at a hazardous waste site can be a complex problem. The number of quality of analyses used in characterization studies has often been compromised by the difficulties and costs associated with quantitative analysis of these volatile analytes. A headspace analysis method was developed by the Westinghouse Savannah River Laboratory to facilitate the accurate and rapid delineation of the vertical and horizontal extent of volatile organic contamination in the subsurface, and to reduce the sample handling, laboratory preparation, and analytical complexity generally associated with the use of several United States Environmental Protection Agency Analysis Methods.

  13. Evaluation of a rapid headspace analysis method for analysis of volatile constituents in soils and sediments

    SciTech Connect

    Sims, W.R.; Looney, B.B.; Eddy, C.A.

    1991-01-01

    Contamination of the subsurface by volatile organic solvents is a common and significant environmental problem. A critical component of developing an accurate assessment of a site contaminated by these solvents is the acquisition of closely spaced, high quality contaminant concentration data. Many volatile organics are relatively mobile in the subsurface, requiring characterization of both horizontal and vertical contaminant migration. The volatile nature of these analyses, combined with the cost and effort typically required to perform quantitative analysis, has often compromised the number of quality of analyses used in characterization studies. A headspace analysis method was developed by Savannah River Laboratory to facilitate accurate and rapid delineation of the vertical and horizontal extent of volatile organic contamination in the subsurface. The method was designed to reduce sample handling, laboratory preparation, and analytical complexity. Detection and delineation of volatile organic solvent contamination at a hazardous waste site can be a complex problem. The number of quality of analyses used in characterization studies has often been compromised by the difficulties and costs associated with quantitative analysis of these volatile analytes. A headspace analysis method was developed by the Westinghouse Savannah River Laboratory to facilitate the accurate and rapid delineation of the vertical and horizontal extent of volatile organic contamination in the subsurface, and to reduce the sample handling, laboratory preparation, and analytical complexity generally associated with the use of several United States Environmental Protection Agency Analysis Methods.

  14. Note: Non-invasive optical method for rapid determination of alignment degree of oriented nanofibrous layers.

    PubMed

    Pokorny, M; Klemes, J; Rebicek, J; Kotzianova, A; Velebny, V

    2015-10-01

    This paper presents a rapid non-destructive method that provides information on the anisotropic internal structure of nanofibrous layers. A laser beam of a wavelength of 632.8 nm is directed at and passes through a nanofibrous layer prepared by electrostatic spinning. Information about the structural arrangement of nanofibers in the layer is directly visible in the form of a diffraction image formed on a projection screen or obtained from measured intensities of the laser beam passing through the sample which are determined by the dependency of the angle of the main direction of polarization of the laser beam on the axis of alignment of nanofibers in the sample. Both optical methods were verified on Polyvinyl alcohol (PVA) nanofibrous layers (fiber diameter of 470 nm) with random, single-axis aligned and crossed structures. The obtained results match the results of commonly used methods which apply the analysis of electron microscope images. The presented simple method not only allows samples to be analysed much more rapidly and without damaging them but it also makes possible the analysis of much larger areas, up to several square millimetres, at the same time. PMID:26521008

  15. The travel-time sequence method for rapid earthquake locating in Taiwan

    NASA Astrophysics Data System (ADS)

    Tsai, Cheng-Yung; Lin, Ting-Li; Wu, Yih-Min

    2015-04-01

    Taiwan is constantly threatened by large and damage earthquakes as the tectonic consequence of the persistent collisions between the Philippine Sea Plate and Eurasian plate. Nowadays, the earthquake early warning (EEW) system is one of the practical tool for seismic hazard mitigation, and has been developed in Taiwan for almost 20 years (Wu et al., 1997; Wu et al., 2000). The earthquake location for the EEW purpose in Taiwan is based on the traditional method with 1-D velocity structure but using less stations. In this study, we developed a new EEW locating method using 3-D velocity structure and pre-calculated travel time database. The seismic network used in this study is the Rapid Earthquake Information Release System (RTD; Wu et al., 1997; Wu et al., 2000) operated by the Central Weather Bureau, Taiwan. We divided the Taiwan area (119~123゚E, 21~26゚N) into 2×2 km grid and each grid point is assumed as the hypocenter with the constant focal depth of 10 km. Therefore, each grid point has its specific travel-time sequence of the RTD stations using the 3-D velocity model (Wu et al., 2009). When an earthquake occurs, we use the first ten station arrival sequence to compare with the travel-time sequence database, and define the least difference grid as the hypocenter. By using the travel-time sequence method, we can rapidly determine the earthquake location more accurate than the present method in Taiwan

  16. Microwave-accelerated method for ultra-rapid extraction of Neisseria gonorrhoeae DNA for downstream detection.

    PubMed

    Melendez, Johan H; Santaus, Tonya M; Brinsley, Gregory; Kiang, Daniel; Mali, Buddha; Hardick, Justin; Gaydos, Charlotte A; Geddes, Chris D

    2016-10-01

    Nucleic acid-based detection of gonorrhea infections typically require a two-step process involving isolation of the nucleic acid, followed by detection of the genomic target often involving polymerase chain reaction (PCR)-based approaches. In an effort to improve on current detection approaches, we have developed a unique two-step microwave-accelerated approach for rapid extraction and detection of Neisseria gonorrhoeae (gonorrhea, GC) DNA. Our approach is based on the use of highly focused microwave radiation to rapidly lyse bacterial cells, release, and subsequently fragment microbial DNA. The DNA target is then detected by a process known as microwave-accelerated metal-enhanced fluorescence (MAMEF), an ultra-sensitive direct DNA detection analytical technique. In the current study, we show that highly focused microwaves at 2.45 GHz, using 12.3-mm gold film equilateral triangles, are able to rapidly lyse both bacteria cells and fragment DNA in a time- and microwave power-dependent manner. Detection of the extracted DNA can be performed by MAMEF, without the need for DNA amplification, in less than 10 min total time or by other PCR-based approaches. Collectively, the use of a microwave-accelerated method for the release and detection of DNA represents a significant step forward toward the development of a point-of-care (POC) platform for detection of gonorrhea infections. PMID:27325503

  17. A Multichannel Wide FOV Infrared Radiometric System

    NASA Astrophysics Data System (ADS)

    Jacobson, S.; Lissak, Z.; Yoav, Y.; Komet, Y.; Davidson, R.

    1990-01-01

    A radiometric system which consists of five IR radiometers with a mutual data acquisition system is described. The system was designed, developed and built at IAI to conduct simultaneous IR signature measurements of a high intensity source at different aspect angles. The requirement to provide a wide FOV radiometric capability led to a technical solution based on the combination of refractive and reflective optics. Each radiometer is equipped with a ZnSe lens, elliptical mirror, mechanical chopper and a thermoelectrically cooled PbSe detector. The chopper is positioned before the entrance aperture and its blades serve as an ambient temperature reference Black Body. The reference temperature is monitored by a temperature transducer. The optical layout of the radiometers and relevant ray tracing examples are demonstrated. The radiometer sensitivity and field of view response data are presented. The data acquisition as well as software capabilities are described. The system is remotely operated. Data on source intensity, at different aspect angles, may be obtained immediately after the test.

  18. A multichannel wide FOV infrared radiometric system

    NASA Astrophysics Data System (ADS)

    Jacobson, S.; Lissak, Z.; Yoav, Y.; Komet, Y.; Davidson, R.

    1989-07-01

    A radiometric system which consists of five IR radiometers with a mutual data acquisition system is described. The system was designed, developed and built at IAI to conduct simultaneous IR signature measurements of a high intensity source at different aspect angles. The requirement to provide a wide FOV radiometric capability led to a technical solution based on the combination of refractive and reflective optics. Each radiometer is equipped with a ZnSe lens, elliptical mirror, mechanical chopper and a thermoelectrically cooled PbSe detector. The chopper is positioned before the entrance aperture and its blades serve as an ambient temperature reference Black Body. The reference temperature is monitored by a temperature transducer. The optical layout of the radiometers and relevant ray tracing examples are demonstrated. The radiometer sensitivity and field of view response data are presented. The data acquisition as well as software capabilities are described. The system is remotely operated. Data on source intensity, at different aspect angles, may be obtained immediately after the test.

  19. Rapid Method for Ra-226 and Ra-228 in Water Samples

    SciTech Connect

    Maxwell, Sherrod, L. III

    2006-02-10

    The measurement of radium isotopes in natural waters is important for oceanographic studies and for public health reasons. Ra-226 (1620 year half-life) is one of the most toxic of the long-lived alpha emitters present in the environment due to its long life and its tendency to concentrate in bones, which increases the internal radiation dose of individuals. The analysis of radium-226 and radium-228 in natural waters can be tedious and time-consuming. Different sample preparation methods are often required to prepare Ra-226 and Ra-228 for separate analyses. A rapid method has been developed at the Savannah River Environmental Laboratory that effectively separates both Ra-226 and Ra-228 (via Ac-228) for assay. This method uses MnO{sub 2} Resin from Eichrom Technologies (Darien, IL, USA) to preconcentrate Ra-226 and Ra-228 rapidly from water samples, along with Ba-133 tracer. DGA Resin{reg_sign} (Eichrom) and Ln-Resin{reg_sign} (Eichrom) are employed in tandem to prepare Ra-226 for assay by alpha spectrometry and to determine Ra-228 via the measurement of Ac-228 by gas proportional counting. After preconcentration, the manganese dioxide is dissolved from the resin and passed through stacked Ln-Resin-DGA Resin cartridges that remove uranium and thorium interferences and retain Ac-228 on DGA Resin. The eluate that passed through this column is evaporated, redissolved in a lower acidity and passed through Ln-Resin again to further remove interferences before performing a barium sulfate microprecipitation. The Ac-228 is stripped from the resin, collected using cerium fluoride microprecipitation and counted by gas proportional counting. By using vacuum box cartridge technology with rapid flow rates, sample preparation time is minimized.

  20. A Rapid and Sensitive Method for Measuring N-Acetylglucosaminidase Activity in Cultured Cells

    PubMed Central

    Mauri, Victor; Lotfi, Parisa; Segatori, Laura; Sardiello, Marco

    2013-01-01

    A rapid and sensitive method to quantitatively assess N-acetylglucosaminidase (NAG) activity in cultured cells is highly desirable for both basic research and clinical studies. NAG activity is deficient in cells from patients with Mucopolysaccharidosis type IIIB (MPS IIIB) due to mutations in NAGLU, the gene that encodes NAG. Currently available techniques for measuring NAG activity in patient-derived cell lines include chromogenic and fluorogenic assays and provide a biochemical method for the diagnosis of MPS IIIB. However, standard protocols require large amounts of cells, cell disruption by sonication or freeze-thawing, and normalization to the cellular protein content, resulting in an error-prone procedure that is material- and time-consuming and that produces highly variable results. Here we report a new procedure for measuring NAG activity in cultured cells. This procedure is based on the use of the fluorogenic NAG substrate, 4-Methylumbelliferyl-2-acetamido-2-deoxy-alpha-D-glucopyranoside (MUG), in a one-step cell assay that does not require cell disruption or post-assay normalization and that employs a low number of cells in 96-well plate format. We show that the NAG one-step cell assay greatly discriminates between wild-type and MPS IIIB patient-derived fibroblasts, thus providing a rapid method for the detection of deficiencies in NAG activity. We also show that the assay is sensitive to changes in NAG activity due to increases in NAGLU expression achieved by either overexpressing the transcription factor EB (TFEB), a master regulator of lysosomal function, or by inducing TFEB activation chemically. Because of its small format, rapidity, sensitivity and reproducibility, the NAG one-step cell assay is suitable for multiple procedures, including the high-throughput screening of chemical libraries to identify modulators of NAG expression, folding and activity, and the investigation of candidate molecules and constructs for applications in enzyme replacement

  1. Fibpredictor: a computational method for rapid prediction of amyloid fibril structures.

    PubMed

    Tabatabaei Ghomi, Hamed; Topp, Elizabeth M; Lill, Markus A

    2016-09-01

    Amyloid fibrils are important in diseases such as Alzheimer's disease and Parkinson's disease, and are also a common instability in peptide and protein drug products. Despite their importance, experimental structures of amyloid fibrils in atomistic detail are rare. To address this limitation, we have developed a novel, rapid computational method to predict amyloid fibril structures (Fibpredictor). The method combines β-sheet model building, β-sheet replication, and symmetry operations with side-chain prediction and statistical scoring functions. When applied to nine amyloid fibrils with experimentally determined structures, the method predicted the correct structures of amyloid fibrils and enriched those among the top-ranked structures. These models can be used as the initial heuristic structures for more complicated computational studies. Fibpredictor is available at http://nanohub.org/resources/fibpredictor . PMID:27502172

  2. Limits of rapid log P determination methods for highly lipophilic and flexible compounds.

    PubMed

    Martel, Sophie; Begnaud, Frédéric; Schuler, William; Gillerat, Fabrice; Oberhauser, Nils; Nurisso, Alessandra; Carrupt, Pierre-Alain

    2016-04-01

    Lipophilicity is of crucial importance in many fields including pharmaceutical, environmental, cosmetic and food industries. Whereas different experimental strategies have been developed for rapid lipophilicity determination of new chemical entities, log P determination of highly lipophilic compounds is always challenging. In this study, three published chromatographic methods have been compared on a series of phenylalkanoic acids including the pro-perfume HaloscentD (HD-C12). Different log P values were obtained depending on the chromatographic method used for log P estimation. Molecular modelling suggested that log P variations may be due to the chromatographic conditions applied (isocratic or gradient mode, ratio methanol/water in the mobile phase), responsible of specific conformations of the molecule in solution. Thus, for flexible compounds, published methods have to be used with caution and considered as a good tool to estimate a log P range, depending on the molecular conformational state. PMID:26995644

  3. Rapid method for determining concentrations of Bayer 73 in water during lampricide treatments

    USGS Publications Warehouse

    Dawson, V.K.; Harman, P.D.; Schultz, D.P.; Allen, J.L.

    1978-01-01

    Two simple, rapid, sensitive methods were developed for determining the concentration of the lampricide 2',5-dichloro-4'-nitrosalicylanilide (Bayer 73) in stream water. Bayer 73 was extracted from acidified water samples with chloroform and then hydrolyzed to 2-chloro-4-nitroaniline (CNA) with either acid or base. The CNA was diazotized with sodium nitrite, and an azo dye was formed with either N-( 1-naphthyl) ethylenediamine dihydrochloride (after acid hydrolysis) or 1-naphthol (after base hydrolysis). There was no interference from the lampricide 3-trifluoromethyl-4-nitrophenol (TFM) in either method. Standard curves were prepared with untreated water to compensate for interfering substances that occurred naturally in some streams. The methods were sensitive to about 0.005 mg/L (ppm). Time required for analysis of a sample ranged from 25 min to 1 h.

  4. Rapid staining method to detect and identify downy mildew (Peronospora belbahrii) in basil1

    PubMed Central

    Koroch, Adolfina R.; Villani, Thomas S.; Pyne, Robert M.; Simon, James E.

    2013-01-01

    • Premise of the study: Demand for fresh-market sweet basil continues to increase, but in 2009 a new pathogen emerged, threatening commercial field/greenhouse production and leading to high crop losses. This study describes a simple and effective staining method for rapid microscopic detection of basil downy mildew (Peronospora belbahrii) from leaves of basil (Ocimum basilicum). • Methods and Results: Fresh leaf sections infected with P. belbahrii were placed on a microscope slide, cleared with Visikol™, and stained with iodine solution followed by one drop of 70% sulfuric acid. Cell walls of the pathogen were stained with a distinct coloration, providing a high-contrast image between the pathogen and plant. • Conclusions: This new staining method can be used successfully to identify downy mildew in basil, which then can significantly reduce its spread if identified early, coupled with mitigation strategies. This technique can facilitate the control of the disease, without expensive and specialized equipment. PMID:25202569

  5. Initial Assessment of a Rapid Method of Calculating CEV Environmental Heating

    NASA Technical Reports Server (NTRS)

    Pickney, John T.; Milliken, Andrew H.

    2010-01-01

    An innovative method for rapidly calculating spacecraft environmental absorbed heats in planetary orbit is described. The method employs reading a database of pre-calculated orbital absorbed heats and adjusting those heats for desired orbit parameters. The approach differs from traditional Monte Carlo methods that are orbit based with a planet centered coordinate system. The database is based on a spacecraft centered coordinated system where the range of all possible sun and planet look angles are evaluated. In an example case 37,044 orbit configurations were analyzed for average orbital heats on selected spacecraft surfaces. Calculation time was under 2 minutes while a comparable Monte Carlo evaluation would have taken an estimated 26 hours

  6. Evaluation of a rapid method for the quantitative estimation of coliforms in meat by impedimetric procedures.

    PubMed Central

    Martins, S B; Selby, M J

    1980-01-01

    A 24-h instrumental procedure is described for the quantitative estimation of coliforms in ground meat. The method is simple and rapid, and it requires but a single sample dilution and four replicates. The data are recorded automatically and can be used to estimate coliforms in the range of 100 to 10,000 organisms per g. The procedure is an impedance detection time (IDT) method using a new medium, tested against 131 stock cultures, that markedly enhances the impedance response of gram-negative organisms, and it is selective for coliforms. Seventy samples of ground beef were analyzed for coliforms by the IDT method and the conventional three-dilution, two-step most-probable-number test tube procedure. Seventy-nine percent of the impedimetric estimates fell within the 95% confidence limits of the most-probable-number values. This corresponds to the criteria used to evaluate other coliform tests, with the added advantage of a single dilution and more rapid results. PMID:6992712

  7. A method of rapidly evaluating image quality of NED optical system

    NASA Astrophysics Data System (ADS)

    Sun, Qi; Qiu, Chuankai; Yang, Huan

    2014-11-01

    In recent years, with the development of technology of micro-display, advanced optics and the software and hardware, near-to-eye display ( NED) optical system will have a wide range of potential applications in the fields of amusement and virtual reality. However, research on the evaluating image quality of this kind optical system is comparatively lagging behind. Although now there are some methods and equipment for evaluation, they can't be applied in commercial production because of their complex operation and inaccuracy. In this paper, an academic method is proposed and a Rapid Evaluation System (RES) is designed to evaluate the image of optical system rapidly and exactly. Firstly, a set of parameters that eyes are sensitive to and also express the quality of system should be extracted and quantized to be criterion, so the evaluation standards can be established. Then, some parameters can be detected by RES consisted of micro-display, CCD camera and computer and so on. By process of scaling, the measuring results of the RES are exact and creditable, relationship between object measurement, subjective evaluation and the RES will be established. After that, image quality of optical system can be evaluated just by detecting parameters of that. The RES is simple and the results of evaluation are exact and keeping with human vision. So the method can be used not only for optimizing design of optical system, but also for evaluation in commercial production.

  8. A rapid, sensitive, and selective method for quantitation of lamprey migratory pheromones in river water.

    PubMed

    Stewart, Michael; Baker, Cindy F; Cooney, Terry

    2011-11-01

    The methodology of using fish pheromones, or chemical signatures, as a tool to monitor or manage species of fish is rapidly gaining popularity. Unequivocal detection and accurate quantitation of extremely low concentrations of these chemicals in natural waters is paramount to using this technique as a management tool. Various species of lamprey are known to produce a mixture of three important migratory pheromones; petromyzonol sulfate (PS), petromyzonamine disulfate (PADS), and petromyzosterol disulfate (PSDS), but presently there are no established robust methods for quantitation of all three pheromones. In this study, we report a new, highly sensitive and selective method for the rapid identification and quantitation of these pheromones in river water samples. The procedure is based on pre-concentration, followed by liquid chromatography/tandem mass spectrometry (LC/MS/MS) analysis. The method is fast, with unambiguous pheromone determination. Practical quantitation limits of 0.25 ng/l were achieved for PS and PADS and 2.5 ng/l for PSDS in river water, using a 200-fold pre-concentration, However, lower quantitation limits can be achieved with greater pre-concentration. The methodology can be modified easily to include other chemicals of interest. Furthermore, the pre-concentration step can be applied easily in the field, circumventing potential stability issues of these chemicals. PMID:22076684

  9. Apparatus and method for rapid detection of explosives residue from the deflagration signature thereof

    DOEpatents

    Funsten, H.O.; McComas, D.J.

    1999-06-15

    Apparatus and method are disclosed for rapid detection of explosives residue from the deflagration signature thereof. A property inherent to most explosives is their stickiness, resulting in a strong tendency of explosive particulate to contaminate the environment of a bulk explosive. An apparatus for collection of residue particulate, burning the collected particulate, and measurement of the ultraviolet emission produced thereby, is described. The present invention can be utilized for real-time screening of personnel, cars, packages, suspected devices, etc., and provides an inexpensive, portable, and noninvasive means for detecting explosives. 4 figs.

  10. Apparatus and method for rapid detection of explosives residue from the deflagration signature thereof

    DOEpatents

    Funsten, Herbert O.; McComas, David J.

    1997-01-01

    Apparatus and method for rapid detection of explosives residue from the deflagration signature thereof. A property inherent to most explosives is their stickiness, resulting in a strong tendency of explosive particulate to contaminate the environment of a bulk explosive. An apparatus for collection of residue particulate, burning the collected particulate, and measurement of the optical emission produced thereby is described. The present invention can be utilized for real-time screening of personnel, cars, packages, suspected devices, etc., and provides an inexpensive, portable, and noninvasive means for detecting explosives.

  11. Apparatus and method for rapid detection of explosives residue from the deflagration signature thereof

    DOEpatents

    Funsten, Herbert O.; McComas, David J.

    1999-01-01

    Apparatus and method for rapid detection of explosives residue from the deflagration signature thereof. A property inherent to most explosives is their stickiness, resulting in a strong tendency of explosive particulate to contaminate the environment of a bulk explosive. An apparatus for collection of residue particulate, burning the collected particulate, and measurement of the ultraviolet emission produced thereby, is described. The present invention can be utilized for real-time screening of personnel, cars, packages, suspected devices, etc., and provides an inexpensive, portable, and noninvasive means for detecting explosives.

  12. High-throughput radiometric CYP2C19 inhibition assay using tritiated (S)-mephenytoin.

    PubMed

    Di Marco, Annalise; Cellucci, Antonella; Chaudhary, Ashok; Fonsi, Massimiliano; Laufer, Ralph

    2007-10-01

    A rapid and sensitive radiometric assay for assessing the potential of drugs to inhibit cytochrome P450 (P450) 2C19 in human liver microsomes is described. The new assay, which does not require high-performance liquid chromatography (HPLC) separation or mass spectrometric detection, is based on the release of tritium as tritiated water that occurs upon CYP2C19-mediated 4'-hydroxylation of (S)-mephenytoin labeled with tritium in the 4' position. Because this reaction is subject to an NIH shift, tritium was also introduced into the 3'- and 5'-positions of the tracer to enhance formation of a tritiated water product. Tritiated water was separated from the substrate using 96-well solid-phase extraction plates. The reaction is NADPH-dependent and sensitive to CYP2C19 inhibitors. IC(50) values for 15 diverse drugs differed less than 2.5-fold from those determined by quantification of the unlabeled 4'-hydroxy-(S)-mephenytoin product, using HPLC coupled to mass spectrometric detection. All of the steps of the new assay, namely incubation, product separation, and radioactivity counting, are performed in a 96-well format and can be automated. This assay represents a non-HPLC, high-throughput version of the classic (S)-mephenytoin 4'-hydroxylation assay, which is the most widely used method to assess the potential for CYP2C19 inhibition of new chemical entities. PMID:17600081

  13. Rapid acid digestion and simple microplate method for milk iodine determination.

    PubMed

    Hedayati, Mehdi; Ordookhani, Arash; Daneshpour, Maryam Sadat; Azizi, Fereidoun

    2007-01-01

    Iodine deficiency leads to deficiency of thyroid hormones, which causes mental retardation in infant. Laboratory confirmation is important in its diagnosis. The major problems associated with the existing methods for iodine determination in milk samples are: 1) nonsafe alkaline solution; 2) harsh thermal condition; and 3) extra time required to complete various steps. In this study, a simple and rapid colorimetric method was investigated, which used acid digestion in combination with a rapid microplate reading format method to determine the total iodine content in milk. Sample digestion was done on 50 microL milk in metavanadate/perchloric, at 230 degrees C for 10 min. After digestion, iodine determination was based on the Sandell-Kolthoff reaction. The reaction results were read in 96-well microplates by an enzyme-linked immunosorbent assay (ELISA) reader. The determination range of the assay was between 2 and 40 microg/dL. The within-run coefficient of variation percent in three levels (3, 12, and 36 microg/dL) ranged from 6.7 to 9.3 and between-run coefficients of variation ranged from 8.6 to 12.3%. The results obtained (n=70) by the optimized method have good correlation with the results of alkaline incineration as a reference method (n=70; r2=0.907; y=0.952x+1.77). Recovery tests for accuracy assessment in six levels from 6.2 to 34.2 microg/dL) were between 91.3 and 113%. This method has enabled us to achieve 0.12 microg/dL sensitivity. The results of this study show that a quick acid digestion combined with mild thermal and low sample volume with a quick reading of assay results were the main advantages of the acid digestion and microplate reading format. PMID:17847102

  14. Evaluation of Three Rapid Diagnostic Methods for Direct Identification of Microorganisms in Positive Blood Cultures

    PubMed Central

    Martinez, Raquel M.; Bauerle, Elizabeth R.; Fang, Ferric C.

    2014-01-01

    The identification of organisms from positive blood cultures generally takes several days. However, recently developed rapid diagnostic methods offer the potential for organism identification within only a few hours of blood culture positivity. In this study, we evaluated the performance of three commercial methods to rapidly identify organisms directly from positive blood cultures: QuickFISH (AdvanDx, Wolburn, MA), Verigene Gram-Positive Blood Culture (BC-GP; Nanosphere, Northbrook, IL), and matrix-assisted laser desorption ionization–time of flight mass spectrometry (MALDI-TOF MS) with Sepsityper processing (Bruker Daltonics, Billerica, MA). A total of 159 blood cultures (VersaTREK Trek Diagnostic Systems, Cleveland, OH) positive for Gram-positive and Gram-negative bacteria as well as yeast were analyzed with QuickFISH and MALDI-TOF MS. In all, 102 blood cultures were analyzed using the BC-GP assay. For monomicrobial cultures, we observed 98.0% concordance with routine methods for both QuickFISH (143/146) and the BC-GP assay (93/95). MALDI-TOF MS demonstrated 80.1% (117/146) and 87.7% (128/146) concordance with routine methods to the genus and species levels, respectively. None of the methods tested were capable of consistently identifying polymicrobial cultures in their entirety or reliably differentiating Streptococcus pneumoniae from viridans streptococci. Nevertheless, the methods evaluated in this study are convenient and accurate for the most commonly encountered pathogens and have the potential to dramatically reduce turnaround time for the provision of results to the treating physician. PMID:24808235

  15. The BUME method: a new rapid and simple chloroform-free method for total lipid extraction of animal tissue.

    PubMed

    Löfgren, Lars; Forsberg, Gun-Britt; Ståhlman, Marcus

    2016-01-01

    In this study we present a simple and rapid method for tissue lipid extraction. Snap-frozen tissue (15-150 mg) is collected in 2 ml homogenization tubes. 500 μl BUME mixture (butanol:methanol [3:1]) is added and automated homogenization of up to 24 frozen samples at a time in less than 60 seconds is performed, followed by a 5-minute single-phase extraction. After the addition of 500 μl heptane:ethyl acetate (3:1) and 500 μl 1% acetic acid a 5-minute two-phase extraction is performed. Lipids are recovered from the upper phase by automated liquid handling using a standard 96-tip robot. A second two-phase extraction is performed using 500 μl heptane:ethyl acetate (3:1). Validation of the method showed that the extraction recoveries for the investigated lipids, which included sterols, glycerolipids, glycerophospholipids and sphingolipids were similar or better than for the Folch method. We also applied the method for lipid extraction of liver and heart and compared the lipid species profiles with profiles generated after Folch and MTBE extraction. We conclude that the BUME method is superior to the Folch method in terms of simplicity, through-put, automation, solvent consumption, economy, health and environment yet delivering lipid recoveries fully comparable to or better than the Folch method. PMID:27282822

  16. The BUME method: a new rapid and simple chloroform-free method for total lipid extraction of animal tissue

    PubMed Central

    Löfgren, Lars; Forsberg, Gun-Britt; Ståhlman, Marcus

    2016-01-01

    In this study we present a simple and rapid method for tissue lipid extraction. Snap-frozen tissue (15–150 mg) is collected in 2 ml homogenization tubes. 500 μl BUME mixture (butanol:methanol [3:1]) is added and automated homogenization of up to 24 frozen samples at a time in less than 60 seconds is performed, followed by a 5-minute single-phase extraction. After the addition of 500 μl heptane:ethyl acetate (3:1) and 500 μl 1% acetic acid a 5-minute two-phase extraction is performed. Lipids are recovered from the upper phase by automated liquid handling using a standard 96-tip robot. A second two-phase extraction is performed using 500 μl heptane:ethyl acetate (3:1). Validation of the method showed that the extraction recoveries for the investigated lipids, which included sterols, glycerolipids, glycerophospholipids and sphingolipids were similar or better than for the Folch method. We also applied the method for lipid extraction of liver and heart and compared the lipid species profiles with profiles generated after Folch and MTBE extraction. We conclude that the BUME method is superior to the Folch method in terms of simplicity, through-put, automation, solvent consumption, economy, health and environment yet delivering lipid recoveries fully comparable to or better than the Folch method. PMID:27282822

  17. The BUME method: a new rapid and simple chloroform-free method for total lipid extraction of animal tissue

    NASA Astrophysics Data System (ADS)

    Löfgren, Lars; Forsberg, Gun-Britt; Ståhlman, Marcus

    2016-06-01

    In this study we present a simple and rapid method for tissue lipid extraction. Snap-frozen tissue (15–150 mg) is collected in 2 ml homogenization tubes. 500 μl BUME mixture (butanol:methanol [3:1]) is added and automated homogenization of up to 24 frozen samples at a time in less than 60 seconds is performed, followed by a 5-minute single-phase extraction. After the addition of 500 μl heptane:ethyl acetate (3:1) and 500 μl 1% acetic acid a 5-minute two-phase extraction is performed. Lipids are recovered from the upper phase by automated liquid handling using a standard 96-tip robot. A second two-phase extraction is performed using 500 μl heptane:ethyl acetate (3:1). Validation of the method showed that the extraction recoveries for the investigated lipids, which included sterols, glycerolipids, glycerophospholipids and sphingolipids were similar or better than for the Folch method. We also applied the method for lipid extraction of liver and heart and compared the lipid species profiles with profiles generated after Folch and MTBE extraction. We conclude that the BUME method is superior to the Folch method in terms of simplicity, through-put, automation, solvent consumption, economy, health and environment yet delivering lipid recoveries fully comparable to or better than the Folch method.

  18. Rapid determination of fluoroquinolone residues in honey by a microbiological screening method and liquid chromatography.

    PubMed

    Kanda, Maki; Kusano, Tomoto; Kanai, Setsuko; Hayashi, Hiroshi; Matushima, Yoko; Nakajima, Takayuki; Takeba, Kazue; Sasamoto, Takeo; Nagayma, Toshijiro

    2010-01-01

    A rapid and efficient method was developed for the simultaneous determination of seven fluoroquinolone (FQ) residues: norfloxacin, ciprofloxacin, danofloxacin, enrofloxacin, orbifloxacin, sarafloxacin, and difloxacin in honey. The samples were first screened with a microbiological method by using test plates made from metal-free purified agar seeded with Bacillus subtilis BGA. When a sample was found to contain FQ residues by using the microbiological method, it was analyzed by LC with fluorescence detection (LC/FL). FQs were extracted with Na2EDTA-McIlvaine buffer and purified by a dual SPE method in which a cation-exchange cartridge was connected to an anion-exchange cartridge. The overall recoveries of the seven FQs ranged from 70.0 to 92.1%. The intra-assay and interassay CVs were < or = 7.8 and < or = 5.1%, respectively. For the microbiological method, the LOD values ranged from 2 to 9 microg/kg. For LC/FL, the LOQ values ranged from 2 to 7 microg/kg. The developed method was used to analyze 70 honey samples. In 14 samples in which the microbiological method detected the presence of FQ residues, norfloxacin, ciprofloxacin, and enrofloxacin were identified by LC/FL. PMID:20922969

  19. A Rapid Method for Determining the Concentration of Recombinant Protein Secreted from Pichia pastoris

    NASA Astrophysics Data System (ADS)

    Sun, L. W.; Zhao, Y.; Niu, L. P.; Jiang, R.; Song, Y.; Feng, H.; feng, K.; Qi, C.

    2011-02-01

    Pichia secretive expression system is one of powerful eukaryotic expression systems in genetic engineering, which is especially suitable for industrial utilization. Because of the low concentration of the target protein in initial experiment, the methods and conditions for expression of the target protein should be optimized according to the protein yield repetitively. It is necessary to set up a rapid, simple and convenient analysis method for protein expression levels instead of the generally used method such as ultrafiltration, purification, dialysis, lyophilization and so on. In this paper, acetone precipitation method was chosen to concentrate the recombinant protein firstly after comparing with four different protein precipitation methods systematically, and then the protein was analyzed by SDS-Polyacrylamide Gel Electrophoresis. The recombinant protein was determined with the feature of protein band by the Automated Image Capture and 1-D Analysis Software directly. With this method, the optimized expression conditions of basic fibroblast growth factor secreted from pichia were obtained, which is as the same as using traditional methods. Hence, a convenient tool to determine the optimized conditions for the expression of recombinant proteins in Pichia was established.

  20. Radiometric Quality Evaluation of INSAT-3D Imager Data

    NASA Astrophysics Data System (ADS)

    Prakash, S.; Jindal, D.; Badal, N.; Kartikeyan, B.; Gopala Krishna, B.

    2014-11-01

    INSAT-3D is an advanced meteorological satellite of ISRO which acquires imagery in optical and infra-red (IR) channels for study of weather dynamics in Indian sub-continent region. In this paper, methodology of radiometric quality evaluation for Level-1 products of Imager, one of the payloads onboard INSAT-3D, is described. Firstly, overall visual quality of scene in terms of dynamic range, edge sharpness or modulation transfer function (MTF), presence of striping and other image artefacts is computed. Uniform targets in Desert and Sea region are identified for which detailed radiometric performance evaluation for IR channels is carried out. Mean brightness temperature (BT) of targets is computed and validated with independently generated radiometric references. Further, diurnal/seasonal trends in target BT values and radiometric uncertainty or sensor noise are studied. Results of radiometric quality evaluation over duration of eight months (January to August 2014) and comparison of radiometric consistency pre/post yaw flip of satellite are presented. Radiometric Analysis indicates that INSAT-3D images have high contrast (MTF > 0.2) and low striping effects. A bias of <4K is observed in the brightness temperature values of TIR-1 channel measured during January-August 2014 indicating consistent radiometric calibration. Diurnal and seasonal analysis shows that Noise equivalent differential temperature (NEdT) for IR channels is consistent and well within specifications.

  1. Validation of Landsat 7 ETM+ band 6 radiometric performance

    NASA Technical Reports Server (NTRS)

    Palluconi, Frank; Hook, Simon; Abtahi, Ali; Alley, Ron

    2005-01-01

    Since shortly after launch the radiometric performance of band 6 of the ETM+ instrument on Landsat 7 has been evaluated using vicarious calbiration techniques for both land and water targets. This evaluation indicates the radiometric performance of band 6 has been both highly stable and accurate.

  2. Rapid and economical method for species identification of clinically significant coagulase-negative staphylococci.

    PubMed Central

    Ieven, M; Verhoeven, J; Pattyn, S R; Goossens, H

    1995-01-01

    Four methods for the species identification of coagulase-negative staphylococci in the medical microbiology laboratory were compared with 444 consecutive isolates. The methods included (i) the reference method based on growth tests, (ii) API ID 32 Staph (bioMérieux), (iii) Staph-Zym (Rosco), and (iv) a rapid 4-h method developed in our laboratory (UZA method). The last method is based on the detection within 4 h of enzymatic activity of heavy bacterial suspensions in three substrate solutions (nongrowth tests). For 16.5% of the isolates some supplementary growth tests read after 24 h had to be added to the enzyme data for satisfactory identification. The reference method failed to identify four isolates. Of the 440 isolates identified by the reference method, API ID 32 Staph, Staph-Zym, and the UZA method correctly identified 419 (95.2%), 429 (97.5%), and 430 (97.7%) and misidentified 8 (1.8%), 4 (0.9%), and 1 (0.2%), respectively. Staphylococcus epidermidis, S. haemolyticus, S. lugdunensis, S. schleiferi, and S. capitis were identified with an accuracy of 98 to 100% by all the systems tested. S. capitis subsp. ureolyticus was not recognized by the API ID 32 system because the biochemical profiles for it are not yet included in the corresponding database. Whereas API ID 32 identified all 13 S. warneri isolates, both Staph-Zym and the UZA method missed 2 of these. S. hominis was identified with the least accuracy by the API ID 32 system (26 of 39 isolates), whereas the UZA and Staph-Zym methods identified 36 of the isolates belonging to this species.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:7615705

  3. Active radiometric calorimeter for absolute calibration of radioactive sources

    NASA Astrophysics Data System (ADS)

    Stump, K. E.; DeWerd, L. A.; Rudman, D. A.; Schima, S. A.

    2005-03-01

    This report describes the design and initial noise floor measurements of a radiometric calorimeter designed to measure therapeutic medical radioactive sources. The instrument demonstrates a noise floor of approximately 2 nW. This low noise floor is achieved by using high temperature superconducting (HTS) transition edge sensor (TES) thermometers in a temperature-control feedback loop. This feedback loop will be used to provide absolute source calibrations based upon the electrical substitution method. Other unique features of the calorimeter are (a) its ability to change sources for calibration without disrupting the vacuum of the instrument, and (b) the ability to measure the emitted power of a source in addition to the total contained source power.

  4. [In-flight absolute radiometric calibration of UAV multispectral sensor].

    PubMed

    Chen, Wei; Yan, Lei; Gou, Zhi-Yang; Zhao, Hong-Ying; Liu, Da-Ping; Duan, Yi-Ni

    2012-12-01

    Based on the data of the scientific experiment in Urad Front Banner for UAV Remote Sensing Load Calibration Field project, with the help of 6 hyperspectral radiometric targets with good Lambertian property, the wide-view multispectral camera in UAV was calibrated adopting reflectance-based method. The result reveals that for green, red and infrared channel, whose images were successfully captured, the linear correlation coefficients between the DN and radiance are all larger than 99%. In final analysis, the comprehensive error is no more than 6%. The calibration results demonstrate that the hyperspectral targets equipped by the calibration field are well suitable for air-borne multispectral load in-flight calibration. The calibration result is reliable and could be used in the retrieval of geophysical parameters. PMID:23427528

  5. Rapid method for glutathione quantitation using high-performance liquid chromatography with coulometric electrochemical detection.

    PubMed

    Bayram, Banu; Rimbach, Gerald; Frank, Jan; Esatbeyoglu, Tuba

    2014-01-15

    A rapid, sensitive, and direct method (without derivatization) was developed for the detection of reduced glutathione (GSH) in cultured hepatocytes (HepG2 cells) using high-performance liquid chromatography with electrochemical detection (HPLC-ECD). The method was validated according to the guidelines of the U.S. Food and Drug Administration in terms of linearity, lower limit of quantitation (LOQ), lower limit of detection (LOD), precision, accuracy, recovery, and stabilities of GSH standards and quality control samples. The total analysis time was 5 min, and the retention time of GSH was 1.78 min. Separation was carried out isocratically using 50 mM sodium phosphate (pH 3.0) as a mobile phase with a fused-core column. The detector response was linear between 0.01 and 80 μmol/L, and the regression coefficient (R(2)) was >0.99. The LOD for GSH was 15 fmol, and the intra- and interday recoveries ranged between 100.7 and 104.6%. This method also enabled the rapid detection (in 4 min) of other compounds involved in GSH metabolism such as uric acid, ascorbic acid, and glutathione disulfite. The optimized and validated HPLC-ECD method was successfully applied for the determination of GSH levels in HepG2 cells treated with buthionine sulfoximine (BSO), an inhibitor, and α-lipoic acid (α-LA), an inducer of GSH synthesis. As expected, the amount of GSH concentration-dependently decreased with BSO and increased with α-LA treatments in HepG2 cells. This method could also be useful for the quantitation of GSH, uric acid, ascorbic acid, and glutathione disulfide in other biological matrices such as tissue homogenates and blood. PMID:24328299

  6. Improved method for rapid detection of phthalates in bottled water by gas chromatography-mass spectrometry.

    PubMed

    Otero, Paz; Saha, Sushanta Kumar; Moane, Siobhan; Barron, John; Clancy, Gerard; Murray, Patrick

    2015-08-01

    An improved gas chromatography-mass spectrometry (GC-MS) method for simple, rapid and precise quantification of phthalates in drinking water is presented. This method was validated for bis (2-n-butoxyethyl) phthalate (DBEP), bis (2-n-ethylhexyl) phthalate (DEHP), butyl benzyl phthalate (BBP), di-butyl phthalate (DBP), diethyl phthalate (DEP), dihexyl phthalate (DHP), dimethyl phthalate (DMP), di-n-octyl phthalate (DNOP) and dinonyl phthalate (DINP). Linearity of 0.9984>r(2)>0.9975 in the range of 0.075-4.8μg/mL for the selected phthalates was obtained. Accuracy values were in the range of 93-114% and RSD% for the analysis of 1.2μg/mL of each phthalate was below 2.3% (n=9). This new method design has significantly improved the detection in terms of rapidity, specificity, repeatability and accuracy compared to available methods. The procedure has been applied to the analyses of three different brands of commercially available bottled mineral water and the corresponding plastic bottles. Phthalates were extracted with dichloromethane and re-constituted in cyclohexane prior to GC-MS analysis. When the validated GC-MS method was applied to the quantification of the selected phthalates in the samples, only DBP (up to 0.0675±0.0018μg/mL) and DEHP (up to 1.6848±0.1631μg/mL) were found. Furthermore, we provide specific data about the concentration of DBP and DEHP in bottled water attributable to migration of phthalates from respective plastic bottles. PMID:26134297

  7. Rapid, simple and efficient method for detection of viral genomes on raspberries.

    PubMed

    Perrin, A; Loutreul, J; Boudaud, N; Bertrand, I; Gantzer, C

    2015-11-01

    In recent years, foodborne viruses, especially human noroviruses (NoV) and hepatitis A virus (HAV), have been increasingly reported as the causes of foodborne disease outbreaks. Soft red fruits, especially raspberries, have a high incidence among the types of food concerned. Due to low infectious doses and low concentrations of enteric viruses in food samples, it is necessary to have an efficient and rapid detection method to implement prevention measures. A standard method for virus detection and quantification in food, including raspberries (XP CEN ISO/TS 15216-1 and -2, 2013) is currently available. This method proposes a consensus detection approach by RT-real time PCR (RT-qPCR) but also a virus extraction procedure based on the elution-concentration principle. In this study, an alternative method of extraction in which RNAs are directly extracted from food matrices (based on direct RNA extraction) has been optimized. First, each step was improved to make it a highly rapid, specific and simple method. Second, the standard virus concentration method was compared with the optimized direct RNA extraction one. Human enteric viral surrogates, Murine Norovirus (MNV) and F-specific RNA bacteriophage GA, were selected according to their adhesion properties and resistance to pH close to our main targets (NoV and HAV). Raspberries were artificially contaminated using two different techniques (immersion and spotting) in order to define a recovery rate and the amounts of virus recovered. Results showed that the direct RNA extraction method revealed significantly higher viral extraction efficiency (46.2%) than the elution-concentration method (20.3%), with similar proportions of inhibitors for both. In the same way with inoculation by spotting, the best recovery rate of GA phage (39.7% against 0.7%) and MNV (42.8% against 0.5%) was observed by direct RNA extraction. For the lowest concentrations of phage and virus in the immersion bath, only the direct RNA extraction method

  8. Rapid fabrication method of a microneedle mold with controllable needle height and width.

    PubMed

    Lin, Yen-Heng; Lee, I-Chi; Hsu, Wei-Chieh; Hsu, Ching-Hong; Chang, Kai-Ping; Gao, Shao-Syuan

    2016-10-01

    The main issue of transdermal drug delivery is that macromolecular drugs cannot diffuse through the stratum corneum of skin. Many studies have pursued micro-sized needles encapsulated with drugs to overcome this problem, as these needles can pierce the stratum corneum and allow drugs to enter the circulatory system of the human body. However, most microneedle fabrication processes are time-consuming and require expensive equipment. In this study, we demonstrate a rapid method for fabricating a microneedle mold using drawing lithography and a UV-cured resin. The mold was filled with a water-soluble material, polyvinylpyrrolidone (PVP), which was then demolded to produce a water-soluble microneedle array. The results of an in vitro skin insertion test using PVP microneedles and pig ear skin demonstrated the feasibility of the microneedle mold. In addition, by controlling the viscosity of the UV-cured resin through various heat treatments, microneedles with different heights and aspect ratios were produced. Compared with other methods, this technology significantly simplifies and accelerates the mold fabrication process. In addition, the required equipment is relatively simple and inexpensive. Through this technology, we can rapidly fabricate microneedle molds with controllable dimensions for various applications. PMID:27565822

  9. Simple, specific, sensitive and rapid loop-mediated method for detecting Yersinia enterocolitica.

    PubMed

    Xu, Yun-Ming; Liu, Xi-Lin; Ma, Jing; Li, Yan-Song; Hu, Pan; Zou, De-Ying; Guo, Xing; Chen, Xiao-Feng; Tang, Feng; Liu, Nan-Nan; Wei, Li-Bin; Zhou, Yu; Liu, Zeng-Shan; Ren, Hong-Lin; Lu, Shi-Ying

    2014-05-01

    Yersinia enterocolitica (YE) is a main pathogenic bacterium causing diarrhea and yersiniosis occurs in both developed and developing countries with high incidence. YE in contaminated food is able to survive for a long duration even under cold storage, thereby enhancing the risk of food infection. In this study, a new loop-mediated isothermal amplification (LAMP) method showing the characteristics of simplicity, rapidity, high specificity and sensitivity was established by targeting outL of pathogenic YE. Two inner-primers and outer-primers were designed and LAMP reaction was optimized for Mg2+, betaine, dNTPs and inner primers concentrations, reaction temperature and time. Sensitivity and specificity of the LAMP assay was evaluated using YE genomic DNA and those of 44 different bacteria strains, respectively. Validation of LAMP detection method was by employing meat samples spiked with varying CFU of YE. The optimized LAMP assay was specific, capable of detecting 97 fg of genomic DNA (equivalent to 37 genome copies) of YE (100-fold more sensitive than PCR) and 80 CFU/ml of YE-spiked meat samples based on ethidium bromide stained amplicon bands on agarose gel-electrophoresis and on GelRed fluorescence of the LAMP reaction solution, respectively. This rapid, sensitive and specific LAMP technique should enable application in field inspection of Y. enterocolitica in food. PMID:24974652

  10. A rapid method to characterize seabed habitats and associated macro-organisms

    USGS Publications Warehouse

    Anderson, T.J.; Cochrane, G.R.; Roberts, D.A.; Chezar, H.; Hatcher, G.

    2007-01-01

    This study presents a method for rapidly collecting, processing, and interrogating real-time abiotic and biotic seabed data to determine seabed habitat classifications. This is done from data collected over a large area of an acoustically derived seabed map, along multidirectional transects, using a towed small camera-sled. The seabed, within the newly designated Point Harris Marine Reserve on the northern coast of San Miguel Island, California, was acoustically imaged using sidescan sonar then ground-truthed using a towed small camera-sled. Seabed characterizations were made from video observations, and were logged to a laptop computer (PC) in real time. To ground-truth the acoustic mosaic, and to characterize abiotic and biotic aspects of the seabed, a three-tiered characterization scheme was employed that described the substratum type, physical structure (i.e., bedform or vertical relief), and the occurrence of benthic macrofauna and flora. A crucial advantage of the method described here, is that preliminary seabed characterizations can be interrogated and mapped over the sidescan mosaic and other seabed information within hours of data collection. This ability to rapidly process seabed data is invaluable to scientists and managers, particularly in modifying concurrent or planning subsequent surveys.

  11. Rapid and nondestructive method for evaluation of embryo culture media using drop coating deposition Raman spectroscopy

    NASA Astrophysics Data System (ADS)

    Huang, Zufang; Sun, Yan; Wang, Jing; Du, Shengrong; Li, Yongzeng; Lin, Juqiang; Feng, Shangyuan; Lei, Jinping; Lin, Hongxin; Chen, Rong; Zeng, Haishan

    2013-12-01

    In this study, a rapid and simple method which combines drop coating deposition and Raman spectroscopy (DCDR) was developed to characterize the dry embryo culture media (ECM) droplet. We demonstrated that Raman spectra obtained from the droplet edge presented useful and characteristic signatures for protein and amino acids assessment. Using a different analytical method, scanning electron microscopy coupled with energy dispersive X-ray analysis, we further confirmed that Na, K, and Cl were mainly detected in the central area of the dry ECM droplet while sulphur, an indicative of the presence of macromolecules such as proteins, was mainly found at the periphery of the droplet. In addition, to reduce sample preparation time, different temperatures for drying the droplets were tested. The results showed that drying temperature at 50°C can effectively reduce the sample preparation time to 6 min (as compared to 50 min for drying at room temperature, ˜25°C) without inducing thermal damage to the proteins. This work demonstrated that DCDR has potential for rapid and reliable metabolomic profiling of ECM in clinical applications.

  12. Development and validation of a rapid analytical method to quantify naled residue.

    PubMed

    Zhong, H; Latham, M

    2001-12-01

    A rapid gas chromatographic method for detecting residues of the thio-organophosphate naled was developed and subsequently validated in laboratory and field studies. More than 90% of naled was recovered by a gas chromatograph when equipped with a DB-5 capillary column and a thermionic specific detector. The limit of detection was 0.01 microg/ml with direct injection. Stabilization of naled under a variety of storage conditions also was examined. Analysis of field data showed that naled broke down rapidly in the environment but was stable when stored in hexane solvent at 4 degrees C and 23 degrees C for at least 7 days. Range of percentage matrix spike recovery was 31-49% for filter paper samples exposed under field conditions for 14 h. A field study was also initiated that collected naled droplets trapped on 6.7-m acrylic mohair-look yarn strands in addition to residue on filter paper after aerial ultra-low-volume mosquito adulticide application. Spike recovery was 79% for filter paper samples and 93% for yarn samples. Average naled residue concentrations with these methods were 373 microg/m2 and 11.28-73.77 microg/yarn, respectively. PMID:11804458

  13. Rapid Method To Estimate the Presence of Secondary Metabolites in Microbial Extracts

    PubMed Central

    Higgs, Richard E.; Zahn, James A.; Gygi, Jeffrey D.; Hilton, Matthew D.

    2001-01-01

    Screening microbial secondary metabolites is an established method to identify novel biologically active molecules. Preparation of biological screening samples from microbial fermentation extracts requires growth conditions that promote synthesis of secondary metabolites and extraction procedures that capture the secondary metabolites produced. High-performance liquid chromatography (HPLC) analysis of fermentation extracts can be used to estimate the number of secondary metabolites produced by microorganisms under various growth conditions but is slow. In this study we report on a rapid (approximately 1 min per assay) surrogate measure of secondary metabolite production based on a metabolite productivity index computed from the electrospray mass spectra of samples injected directly into a spectrometer. This surrogate measure of productivity was shown to correlate with an HPLC measure of productivity with a coefficient of 0.78 for a test set of extracts from 43 actinomycetes. This rapid measure of secondary metabolite productivity may be used to identify improved cultivation and extraction conditions by analyzing and ranking large sets of extracts. The same methods may also be used to survey large collections of extracts to identify subsets of highly productive organisms for biological screening or additional study. PMID:11133468

  14. Radiometric modelling of a space optical instrument: an example of application to PHEBUS

    NASA Astrophysics Data System (ADS)

    Corso, Alain J.; Zuppella, Paola; Mariscal, Jean Francois; Rouanet, Nicolas; Quémerais, Eric; Nardello, Marco; Nicolosi, Piergiorgio; Tessarolo, Enrico; Bacco, Davide; Gerlin, Francesca; Zuccon, Sara; Pelizzo, Maria G.

    2015-05-01

    Probing of Hermean Exosphere By Ultraviolet Spectroscopy (PHEBUS) is a dual channels spectrometer working in the Extreme UltraViolet (EUV) and Far UltraViolet (FUV) range. It will be on board of ESA BepiColombo cornerstone mission and it will be devoted to investigate the composition, the dynamic, the formation and the feeding mechanisms of Mercury's exosphere system. A consistent interpretation of the observational data collected by PHEBUS requires a deeply knowledge of its radiometric behavior. The Mueller's matrix formalism can be adopted to derive an accurate radiometric model able to takes into account also the polarization state of the source observed by PHEBUS. Moreover, this theoretical model can be further verified and refined during an experimental ground calibration campaign. In this work we present the radiometric model derived for PHEBUS spectrometer together with some results obtained during the Flight Model (FM) ground calibration which is still ongoing. In particular, the obtained results employing this approach show that this is a complete and versatile method to perform the radiometric calibration of a generic space instrument.

  15. A new method for rapid determination of carbohydrate and total carbon concentrations using UV spectrophotometry.

    PubMed

    Albalasmeh, Ammar A; Berhe, Asmeret Asefaw; Ghezzehei, Teamrat A

    2013-09-12

    A new UV spectrophotometry based method for determining the concentration and carbon content of carbohydrate solution was developed. This method depends on the inherent UV absorption potential of hydrolysis byproducts of carbohydrates formed by reaction with concentrated sulfuric acid (furfural derivatives). The proposed method is a major improvement over the widely used Phenol-Sulfuric Acid method developed by DuBois, Gilles, Hamilton, Rebers, and Smith (1956). In the old method, furfural is allowed to develop color by reaction with phenol and its concentration is detected by visible light absorption. Here we present a method that eliminates the coloration step and avoids the health and environmental hazards associated with phenol use. In addition, avoidance of this step was shown to improve measurement accuracy while significantly reducing waiting time prior to light absorption reading. The carbohydrates for which concentrations and carbon content can be reliably estimated with this new rapid Sulfuric Acid-UV technique include: monosaccharides, disaccharides and polysaccharides with very high molecular weight. PMID:23911443

  16. Rapid Analysis of Glibenclamide Using an Environmentally Benign Stability-Indicating RP-HPLC Method

    PubMed Central

    Haq, Nazrul; Alanazi, Fars Kaed; Alsarra, Ibrahim Abdullah; Shakeel, Faiyaz

    2014-01-01

    An environmentally benign RP-HPLC approach for rapid analysis of glibenclamide in pure form, developed nanoemulsion and commercial tablets was developed and validated in present investigation. The green chromatographic identification was performed on Lichrosphere 250 X 4.0 mm RP C8 column having a 5 μm packing as a stationary phase using a combination of ethanol: methanol (50:50 % v/v) as a mobile phase, at a flow rate of 1.0 mL/min with UV detection at 245 nm. The proposed method was validated for linearity, selectivity, accuracy, precision, robustness, sensitivity and specificity as per international conference on harmonization (ICH) guidelines. The utility of proposed method was verified by assay of glibenclamide in developed nanoemulsion and commercial tablets. The proposed method was found to be satisfactory in terms of selectivity, precision, accuracy, robustness, sensitivity and specificity. The content of glibenclamide in developed nanoemulsion and commercial tablets was found to be 100.50 % and 99.15 % respectively. The proposed method successfully resoled glibenclamide peak in the presence of its all type of degradation products which indicated stability-indicating property of the proposed method. These results indicated that the green chromatographic method could be successfully employed for routine analysis of glibenclamide in pure drug and various commercial formulations. PMID:25276186

  17. [Rapid method to extract high-quality RNA from activated sludge].

    PubMed

    Jin, Min; Zhao, Zu-Guo; Qiu, Zhi-Gang; Wang, Jing-Feng; Chen, Zhao-Li; Shen, Zhi-Qiang; Li, Chao; Wang, Xin-Wei; Dong, Yan; Li, Jun-Wen

    2010-01-01

    An effective and fast RNA isolation method of activated sludge was established and five different methods were compared based on RNA yield, purity, integrity, RT-PCR amplification of 16S rRNA genes and subsequent terminal restriction fragment length polymorphism (T-RFLP) analysis. That is, the precipitated activated sludge was washed with TENP and PBS buffer, followed by using lysozyme and TRIzol to direct lysis of microbial cells, chloroform to remove protein and most of the DNA from bacterial lysate, isopropanol to precipitate nucleic acid and DNase I to hydrolyze residual DNA. To further purify RNA, RNA purifying column was utilized. The results demonstrated that the extraction method, with the aid of TRIzol and RNA purification kit, can effectively extract high-quality RNA. It not only means low degradability and high quantity, purity and diversity, but also the genes of 16S rRNA and amoA can be amplified by RT-PCR. Compared with other methods, it showed great advantage of low cost and high efficiency and can be applied to RNA extraction of activated sludge in a large number. Furthermore, T-RFLP results indicated that the community composition as well as the abundance of individual members was affected by the kind of RNA extraction methods. This work established a rapid and effective method to extract high-quality RNA from activated sludge and would show great potential for monitoring microbial changes and studying metabolism and community array of activated sludge. PMID:20329549

  18. Developing the RIAM method (rapid impact assessment matrix) in the context of impact significance assessment

    SciTech Connect

    Ijaes, Asko; Kuitunen, Markku T.; Jalava, Kimmo

    2010-02-15

    In this paper the applicability of the RIAM method (rapid impact assessment matrix) is evaluated in the context of impact significance assessment. The methodological issues considered in the study are: 1) to test the possibilities of enlarging the scoring system used in the method, and 2) to compare the significance classifications of RIAM and unaided decision-making to estimate the consistency between these methods. The data used consisted of projects for which funding had been applied for via the European Union's Regional Development Trust in the area of Central Finland. Cases were evaluated with respect to their environmental, social and economic impacts using an assessment panel. The results showed the scoring framework used in RIAM could be modified according to the problem situation at hand, which enhances its application potential. However the changes made in criteria B did not significantly affect the final ratings of the method, which indicates the high importance of criteria A1 (importance) and A2 (magnitude) to the overall results. The significance classes obtained by the two methods diverged notably. In general the ratings given by RIAM tended to be smaller compared to intuitive judgement implying that the RIAM method may be somewhat conservative in character.

  19. USING AN INTENSIVE ASSESSMENT METHOD TO CALIBRATE A RAPID WETLAND ASSESSMENT METHOD: AN EXAMPLE FROM NANTICOKE BASIN, DELAWARE AND MARYLAND, USA

    EPA Science Inventory

    The development of rapid assessment methods has become a priority for many organizations that want to report on the condition of wetlands at larger scales requiring many sampling sites. To have faith in these rapid methods, however, requires that they be verified with more compr...

  20. Improved capabilities of the Chinese high-resolution remote sensing satellite GF-1 for monitoring suspended particulate matter (SPM) in inland waters: Radiometric and spatial considerations

    NASA Astrophysics Data System (ADS)

    Li, Jian; Chen, Xiaoling; Tian, Liqiao; Huang, Jue; Feng, Lian

    2015-08-01

    Dominated by high dynamic and small-scale variability, remote sensing of inland or coastal waters is frequently impended by insufficient spatial resolutions from conventional ocean color sensors. With the urgent need and the rapid progress in high-resolution earth observation systems (HR), it is critical to assess the capabilities of HR in inland water monitoring. In this study, the radiometric and spatial performance of the Chinese high-resolution GF-1 Wide Field Imager (WFI) data for water quality monitoring were evaluated in term of the signal-to-noise ratio (SNR), sensitivity to suspended particulate matter (SPM) variations and spatial depiction ability. The SNR was statistically estimated from variable moving window method, and the radiometric sensitivity was simulated using the Moderate Resolution Atmospheric Transmission (MODTRAN) under varied surface and atmospheric conditions. Results indicated that both the SNR and the radiometric sensitivity of the GF-1 WFI were enhanced by 3-5 times than its predecessor (Chinese HJ-1 CCD) or Landsat 7 Enhanced Thematic Mapper Plus (ETM+), and were comparable to Landsat 8 Operational Land Imager (OLI) and Moderate Resolution Imaging Spectroradiometer (MODIS) medium-resolution bands (250 and 500 m), which have been extensively applied in inland water environment monitoring. Cross comparisons demonstrated high consistency of the spatial distribution and concentration of SPM maps between GF-1 WFI and Landsat 8 OLI. Furthermore, more than 75% of the spatial variations in high turbid waters were resolved from GF-1 WFI data, whereas the ability dropped to 40% when the spatial resolution was degraded to 250 m (MODIS-like sensors). Overall, GF-1 WFI is extraordinarily promising with an enhanced SNR, an increased spectral sensitivity to SPM variations and an advanced spatial resolution. With the ongoing plans of the successive GF series (2-7), the findings would serve as a reference for forthcoming applications, and are critical

  1. A rapid and repeatable method for venom extraction from cubozoan nematocysts.

    PubMed

    Carrette, T; Seymour, J

    2004-08-01

    Various comparative studies into the biological activity and relative toxicity of cubozoan venoms have been investigated, in particular the venom from the potentially lethal cubozoan Chironex fleckeri. Efficient and reliable extraction of venom from nematocysts is essential before any research into venom toxicity can be conducted and previous cited methods of extraction have varied greatly, each with their own associated problems. A new standardised technique for the recovery of venom from nematocysts of cubozoans is investigated to decrease the variation displayed between authors due to differing extraction techniques. The use of a mini bead mill beater, as investigated in this trial, allows for the rapid extraction of venom from nematocysts and is devoid of the previously isolated problems experienced with other methods of venom isolation, such as excessive heat build up. PMID:15246760

  2. Cellulose acetate fibers prepared from different raw materials with rapid synthesis method.

    PubMed

    Chen, Jinghuan; Xu, Jikun; Wang, Kun; Cao, Xuefei; Sun, Runcang

    2016-02-10

    Transesterification is a mild process to prepare cellulose acetate (CA) as compared with the traditional method. In this study, CA fibers were produced from six cellulose raw materials based on a simple and rapid transesterification method. The properties of the CA solutions and the obtained CA fibers were investigated in detail. Results showed that all of the cellulose raw materials were esterified within 15 min, and spinning dopes could be obtained by concentrating the CA solutions via vacuum distillation. The XRD, FT-IR, (1)H, (13)C and HSQC NMR analysis confirmed the successful synthesis of CA. The degree of substitution (DS) of the obtained CA was significantly affected by the degree of polymerization (DP) of cellulose raw materials, which further influenced the viscosity of CA solutions as well as the structural, thermal and mechanical properties of the CA fibers. PMID:26686180

  3. A rapid method for isolation of piperine from the fruits of Piper nigrum Linn.

    PubMed

    Kanaki, Niranjan; Dave, Mansi; Padh, Harish; Rajani, Mandapati

    2008-07-01

    A simple, rapid and efficient method has been developed for the isolation of piperine from the fruits of Piper nigrum. The method involves extraction of the fruit powder with glacial acetic acid, from which piperine is partitioned into chloroform and subsequently crystallized. The identity of the compound was confirmed by its melting point, comparison of UV, IR, and mass spectral data with those from a reference standard, and co-chromatography with the reference standard using thin-layer chromatography (TLC). The purity of the compound was ascertained by TLC, by recording UV absorption spectra at the start, middle, and end positions of the spot on the plate, and by differential scanning calorimetry (DSC). PMID:18404304

  4. A rapid method of grading cataract in epidemiological studies and eye surveys.

    PubMed Central

    Mehra, V; Minassian, D C

    1988-01-01

    A rapid method of grading clinically important central lens opacities has been developed for use in eye surveys and in epidemiological studies of cataract and has been field-tested in a specifically designed observer agreement study in a survey of a rural community in Central India. The grading method is based on simple measurement of the area of lens opacity that obscures the red reflex relative to the area of clear red reflex, as visualised through the undilated normal pupil. Good to almost perfect agreements were attained between two ophthalmologists and two trained ophthalmic assistants for overall grades of central lens opacity. Most disagreements were trivial in nature and were concerned with difficulties in distinguishing grade 0 from grade 1, and with hazy appearance of the red reflex in high myopes and in cases of early nuclear sclerosis. Teaching materials including video tape and slides for training survey teams and other workers are in preparation. PMID:3207653

  5. A rapid and simple method to draw polyethylene nanofibers with enhanced thermal conductivity

    NASA Astrophysics Data System (ADS)

    Ma, Jian; Zhang, Qian; Zhang, Yin; Zhou, Lei; Yang, Juekuan; Ni, Zhonghua

    2016-07-01

    We report on a rapid and simple method to fabricate polyethylene (PE) nanofibers by one-step drawing from PE solution. The diameter of the fiber prepared with this method can be as small as 40 nm. The thermal conductivity of the drawn PE nanofiber was measured with suspended microdevices, and the highest value obtained is 8.8 W m-1 K-1, which is very close to that of electrospun PE nanofibers, and over 20 times higher than bulk value. Raman spectra of these drawn PE nanofibers indicate that molecular chains in these fibers can be as well aligned as that in electrospun fibers, which results in the enhanced thermal conductivity of the drawn PE nanofibers.

  6. Rapid Molecular Detection Methods for Arboviruses of Livestock of Importance to Northern Europe

    PubMed Central

    Johnson, Nicholas; Voller, Katja; Phipps, L. Paul; Mansfield, Karen; Fooks, Anthony R.

    2012-01-01

    Arthropod-borne viruses (arboviruses) have been responsible for some of the most explosive epidemics of emerging infectious diseases over the past decade. Their impact on both human and livestock populations has been dramatic. The early detection either through surveillance or diagnosis of virus will be a critical feature in responding and resolving the emergence of such epidemics in the future. Although some of the most important emerging arboviruses are human pathogens, this paper aims to highlight those diseases that primarily affect livestock, although many are zoonotic and some occasionally cause human mortality. This paper also highlights the molecular detection methods specific to each virus and identifies those emerging diseases for which a rapid detection methods are not yet developed. PMID:22219660

  7. A rapid method for measuring intracellular pH using BCECF-AM.

    PubMed

    Ozkan, Pinar; Mutharasan, Raj

    2002-08-15

    A rapid intracellular pH (pH(i)) measurement method based on initial rate of increase of fluorescence ratio of 2',7'-bis(2-carboxyethyl)-5,6-carboxyfluorescein upon dye addition to a cell suspension in growth medium is reported. A dye transport model that describes dye concentration and fluorescence values in intracellular and extracellular spaces provides the mathematical basis for the approach. Experimental results of ammonium chloride challenge response of the two suspension cells, Spodoptera frugiperda and Chinese hamster ovary (CHO) cells, successfully compared with results obtained using traditional perfusion method. Since the cell suspension does not require any preparation, measurement of pH(i) can be completed in about 1 min minimizing any potential errors due to dye leakage. PMID:12204343

  8. Rapid PCR-Based Method Which Can Determine Both Phenotype and Genotype of Lactococcus lactis Subspecies

    PubMed Central

    Nomura, Masaru; Kobayashi, Miho; Okamoto, Takashi

    2002-01-01

    A highly efficient, rapid, and reliable PCR-based method for distinguishing Lactococcus lactis subspecies (L. lactis subsp. lactis and L. lactis subsp. cremoris) is described. Primers complementary to positions in the glutamate decarboxylase gene have been constructed. PCR analysis with extracted DNA or with cells of different L. lactis strains resulted in specific fragments. The length polymorphism of the PCR fragments allowed a clear distinction of the L. lactis subspecies. The amplified fragment length polymorphism with the primers and the restriction fragment length polymorphism of the amplified products agreed perfectly with the identification based on genotypic and phenotypic analyses, respectively. Isolates from cheese starters were investigated by this method, and amplified fragments of genetic variants were found to be approximately 40 bp shorter than the typical L. lactis subsp. cremoris fragments. PMID:11976090

  9. Rapid method for determination of content of unsaturated hydrocarbons in naphtha cuts

    SciTech Connect

    Mozhaiko, V.N.; Seleznev, V.D.

    1988-03-01

    The method to determine total content of unsaturated hydrocarbons in naphtha cuts from reforming, cracking, and pyrolysis consisted of exhaustive catalytic hydrogenation of the unsaturated hydrocarbons, with detection of the hydrogen consumed in the hydrogenation reaction. The analyses were performed in a KhL-4 chromatography; the gas flow plan is shown. Preliminary experiments with saturated hydrocarbons (hexane, octane, decane) were performed. Naphthene experiments (methylcyclopentane, cyclohexane) showed no peak to indicate an increase in hydrogen concentration. No hydrogenation was observed in experiments with benzene and toluene. A comparison was made from analyses using the GOST 2070-82 and the rapid method as applied to IBP-180/sup 0/C cuts from reformer naphthas produced under varying conditions of severity.

  10. Visible/infrared radiometric calibration station

    SciTech Connect

    Byrd, D.A.; Maier, W.B. II; Bender, S.C.; Holland, R.F.; Michaud, F.D.; Luettgen, A.L.; Christensen, R.W.; O`Brian, T.R.

    1994-07-01

    We have begun construction of a visible/infrared radiometric calibration station that will allow for absolute calibration of optical and IR remote sensing instruments with clear apertures less than 16 inches in diameter in a vacuum environment. The calibration station broadband sources will be calibrated at the National Institute of Standards and Technology (NIST) and allow for traceable absolute radiometric calibration to within {plus_minus}3% in the visible and near IR (0.4--2.5 {mu}m), and less than {plus_minus}1% in the infrared, up to 12 {mu}m. Capabilities for placing diffraction limited images or for sensor full-field flooding will exist. The facility will also include the calibration of polarization and spectral effects, spatial resolution, field of view performance, and wavefront characterization. The configuration of the vacuum calibration station consists of an off-axis 21 inch, f/3.2, parabolic collimator with a scanning fold flat in collimated space. The sources are placed, via mechanisms to be described, at the focal plane of the off-axis parabola. Vacuum system pressure will be in the 10{sup {minus}6} Torr range. The broadband white-light source is a custom design by LANL with guidance from Labsphere Inc. The continuous operating radiance of the integrating sphere will be from 0.0--0.006 W/cm{sup 2}/Sr/{mu}m (upper level quoted for {approximately}500 nm wavelength). The blackbody source is also custom designed at LANL with guidance from NIST. The blackbody temperature will be controllable between 250--350{degrees}K. Both of the above sources have 4.1 inch apertures with estimated radiometric instability at less than 1%. The designs of each of these units will be described. The monochromator and interferometer light sources are outside the vacuum, but all optical relay and beam shaping optics are enclosed within the vacuum calibration station. These sources are described, as well as the methodology for alignment and characterization.

  11. Enhanced radiometric detection of Mycobacterium paratuberculosis by using filter-concentrated bovine fecal specimens

    SciTech Connect

    Collins, M.T.; Kenefick, K.B.; Sockett, D.C.; Lambrecht, R.S.; McDonald, J.; Jorgensen, J.B. )

    1990-11-01

    A commercial radiometric medium, BACTEC 12B, was modified by addition of mycobactin, egg yolk suspension, and antibiotics (vancomycin, amphotericin B, and nalidixic acid). Decontaminated bovine fecal specimens were filter concentrated by using 3-microns-pore-size, 13-mm-diameter polycarbonate filters, and the entire filter was placed into the radiometric broth. Comparison of the radiometric technique with conventional methods on 603 cattle from 9 Mycobacterium paratuberculosis-infected herds found that of 75 positive specimens, the radiometric technique detected 92% while conventional methods detected 60% (P less than 0.0005). Only 3.9% of radiometric cultures were contaminated. To measure the effect of filter concentration of specimens on the detection rate, 5 cattle with minimal and 5 with moderate ileum histopathology were sampled weekly for 3 weeks. M. paratuberculosis was detected in 33.3% of nonfiltered specimens and 76.7% of filtered specimens (P less than 0.005). Detection rates were directly correlated with the severity of disease, and the advantage of specimen concentration was greatest on fecal specimens from cattle with low-grade infections. Detection times were also correlated with infection severity: 13.4 +/- 5.9 days with smear-positive specimens, 27.9 +/- 8.7 days with feces from cows with typical subclinical infections, and 38.7 +/- 3.8 days with fecal specimens from cows with low-grade infections. Use of a cocktail of vancomycin, amphotericin B, and nalidixic acid for selective suppression of nonmycobacterial contaminants was better than the commercial product PANTA (Becton Dickinson Microbiologic Systems, Towson, Md.) only when specimens contained very low numbers of M. paratuberculosis.

  12. TS-AMIR: a topology string alignment method for intensive rapid protein structure comparison

    PubMed Central

    2012-01-01

    Background In structural biology, similarity analysis of protein structure is a crucial step in studying the relationship between proteins. Despite the considerable number of techniques that have been explored within the past two decades, the development of new alternative methods is still an active research area due to the need for high performance tools. Results In this paper, we present TS-AMIR, a Topology String Alignment Method for Intensive Rapid comparison of protein structures. The proposed method works in two stages: In the first stage, the method generates a topology string based on the geometric details of secondary structure elements, and then, utilizes an n-gram modelling technique over entropy concept to capture similarities in these strings. This initial correspondence map between secondary structure elements is submitted to the second stage in order to obtain the alignment at the residue level. Applying the Kabsch method, a heuristic step-by-step algorithm is adopted in the second stage to align the residues, resulting in an optimal rotation matrix and minimized RMSD. The performance of the method was assessed in different information retrieval tests and the results were compared with those of CE and TM-align, representing two geometrical tools, and YAKUSA, 3D-BLAST and SARST as three representatives of linear encoding schemes. It is shown that the method obtains a high running speed similar to that of the linear encoding schemes. In addition, the method runs about 800 and 7200 times faster than TM-align and CE respectively, while maintaining a competitive accuracy with TM-align and CE. Conclusions The experimental results demonstrate that linear encoding techniques are capable of reaching the same high degree of accuracy as that achieved by geometrical methods, while generally running hundreds of times faster than conventional programs. PMID:22336468

  13. A rapid HPLC method for simultaneous determination of tretinoin and isotretinoin in dermatological formulations.

    PubMed

    Tashtoush, Bassam M; Jacobson, Elaine L; Jacobson, Myron K

    2007-02-19

    A rapid method using an isocratic high-pressure liquid chromatography and UV detection for determination of both all-trans retinoic acid (tretinoin) and 13-cis retinoic acid (isotretinoin) in dermatological preparations is presented. Tretinoin and isotretinoin samples were extracted with acetonitrile by a procedure that can be completed in less than 10 min. Subsequent separation and quantification of amounts as low as 10 pmol was accomplished in less than 15 min using reversed-phase HPLC with isocratic elution with 0.01% trifluoroacetic acid (TFA)/acetonitrile (15:85, v/v). Validation experiments confirmed the precision and accuracy of the method. When applied to commercial tretinoin samples, recoveries of 104.9% for cream formulations and 107.7% for gel formulations were obtained. Application of the method for analysis of a tretinoin cream exposed to solar simulated light (SSL) demonstrated detection of the major photoisomerization product isotretinoin as well as 9-cis retinoic acid, demonstrating the utility of the method for studies of tretinoin photostability. The method should also facilitate studies of the formulation compatibility and photocompatibility of tretinoin with agents that may improve its clinical tolerability. PMID:17045442

  14. Rapid fusion method for the determination of Pu, Np, and Am in large soil samples

    DOE PAGESBeta

    Maxwell, Sherrod L.; Culligan, Brian; Hutchison, Jay B.; McAlister, Daniel R.

    2015-02-14

    A new rapid sodium hydroxide fusion method for the preparation of 10-20 g soil samples has been developed by the Savannah River National Laboratory (SRNL). The method enables lower detection limits for plutonium, neptunium, and americium in environmental soil samples. The method also significantly reduces sample processing time and acid fume generation compared to traditional soil digestion techniques using hydrofluoric acid. Ten gram soil aliquots can be ashed and fused using the new method in 1-2 hours, completely dissolving samples, including refractory particles. Pu, Np and Am are separated using stacked 2mL cartridges of TEVA and DGA Resin and measuredmore » using alpha spectrometry. The method can be adapted for measurement by inductively-coupled plasma mass spectrometry (ICP-MS). Two 10 g soil aliquots of fused soil may be combined prior to chromatographic separations to further improve detection limits. Total sample preparation time, including chromatographic separations and alpha spectrometry source preparation, is less than 8 hours.« less

  15. Rapid fusion method for the determination of Pu, Np, and Am in large soil samples

    SciTech Connect

    Maxwell, Sherrod L.; Culligan, Brian; Hutchison, Jay B.; McAlister, Daniel R.

    2015-02-14

    A new rapid sodium hydroxide fusion method for the preparation of 10-20 g soil samples has been developed by the Savannah River National Laboratory (SRNL). The method enables lower detection limits for plutonium, neptunium, and americium in environmental soil samples. The method also significantly reduces sample processing time and acid fume generation compared to traditional soil digestion techniques using hydrofluoric acid. Ten gram soil aliquots can be ashed and fused using the new method in 1-2 hours, completely dissolving samples, including refractory particles. Pu, Np and Am are separated using stacked 2mL cartridges of TEVA and DGA Resin and measured using alpha spectrometry. The method can be adapted for measurement by inductively-coupled plasma mass spectrometry (ICP-MS). Two 10 g soil aliquots of fused soil may be combined prior to chromatographic separations to further improve detection limits. Total sample preparation time, including chromatographic separations and alpha spectrometry source preparation, is less than 8 hours.

  16. Method and apparatus for rapidly growing films on substrates using pulsed supersonic jets

    DOEpatents

    Eres, Diula; Lowndes, Douglas H.

    1992-01-01

    A method and apparatus for the rapid and economical deposition of uniform and high quality films upon a substrate for subsequent use in producing electronic devices, for example. The resultant films are either epitaxial (crystalline) or amorphous depending upon the incidence rate and the temperature and structure of the substrate. The deposition is carried out in a chamber maintained at about 10.sup.-6 Torr. A gaseous source of the material for forming the deposit is injected into the deposition chamber in the form of a pulsed supersonic jet so as to obtain a high incidence rate. The supersonic jet is produced by a pulsed valve between a relatively high presure reservoir, containing the source gaseous molecules, and the deposition chamber; the valve has a small nozzle orifice (e.g., 0.1-1.0 mm diameter). The type of deposit (crystalline amorphous) is then dependent upon the temperature and structure of the substrate. Very high deposition rates are achieved, and the deposit is very smooth and of uniform thickness. Typically the deposition rate is about 100 times that of much more expensive conventional molecular beam methods for deposition, and comparable to certain expensive plasma-assisted CVD methods of the art. The high growth rate of this method results in a reduced contamination of the deposit from other elements in the environment. The method is illustrated by the deposition of epitaxial and amorphour germanium films upon GaAs substrates.

  17. Third comparison of the World Radiometric Reference and the SI radiometric scale

    NASA Astrophysics Data System (ADS)

    Finsterle, W.; Blattner, P.; Moebus, S.; Rüedi, I.; Wehrli, C.; White, M.; Schmutz, W.

    2008-08-01

    Ten years after the last comparison of the World Radiometric Reference (WRR) to the Système International (SI) radiometric scale and in respect of the recent introduction of a quality management system for the maintenance and dissemination of WRR, the need for a third comparison became apparent. In this third comparison, the two scales are related through two separate radiometers representing WRR and two independent realizations of SI by cryogenic radiometers at the Bundesamt für Metrologie (METAS) in Wabern, Switzerland, and at the National Physical Laboratory in Teddington, UK. The final results have confirmed the previously stated agreement between WRR and SI scales to better than 0.03% ± 0.14%.

  18. Rapid and highly sensitive method for influenza A (H1N1) virus detection.

    PubMed

    Su, Li-Chen; Chang, Chung-Ming; Tseng, Ya-Ling; Chang, Ying-Feng; Li, Ying-Chang; Chang, Yu-Sun; Chou, Chien

    2012-05-01

    In this study, we applied the developed paired surface plasma waves biosensor (PSPWB) in a dual-channel biosensor for rapid and sensitive detection of swine-origin influenza A (H1N1) virus (S-OIV). In conjunction with the amplitude ratio of the signal and the reference channel, the stability of the PSPWB system is significantly improved experimentally. The theoretical limit of detection (LOD) of the dual-channel PSPWB for S-OIV is 30 PFU/mL (PFU, plaque-forming unit), which was calculated from the fitting curve of the surface plasmon resonance signal with a S-OIV clinical isolate concentration in phosphate-buffered saline (PBS) over a range of 18-1.8 × 10(6) PFU/mL. The LOD is 2 orders of magnitude more sensitive than the commercial rapid influenza diagnostic test at worst and an order of magnitude less sensitive than real-time quantitative polymerase chain reaction (PCR) whose LOD for S-OIV in PBS was determined to be 3.5 PFU/mL in this experiment. Furthermore, under in vivo conditions, this experiment demonstrates that the assay successfully measured S-OIV at a concentration of 1.8 × 10(2) PFU/mL in mimic solution, which contained PBS-diluted normal human nasal mucosa. Most importantly, the assay time took less than 20 min. From the results, the dual-channel PSPWB potentially offers great opportunity in developing an alternative PCR-free diagnostic method for rapid, sensitive, and accurate detection of viral pathogens with epidemiological relevance in clinical samples by using an appropriate pathogen-specific antibody. PMID:22401570

  19. A Simple and Rapid Identification Method for Mycobacterium bovis BCG with Loop-Mediated Isothermal Amplification

    PubMed Central

    Kouzaki, Yuji; Maeda, Takuya; Sasaki, Hiroaki; Tamura, Shinsuke; Hamamoto, Takaaki; Yuki, Atsushi; Sato, Akinori; Miyahira, Yasushi; Kawana, Akihiko

    2015-01-01

    Bacillus Calmette-Guérin (BCG) is widely used as a live attenuated vaccine against Mycobacterium tuberculosis and is an agent for standard prophylaxis against the recurrence of bladder cancer. Unfortunately, it can cause severe infectious diseases, especially in immunocompromised patients, and the ability to immediately distinguish BCG from other M. tuberculosis complexes is therefore important. In this study, we developed a simple and easy-to-perform identification procedure using loop-mediated amplification (LAMP) to detect deletions within the region of difference, which is deleted specifically in all M. bovis BCG strains. Reactions were performed at 64°C for 30 min and successful targeted gene amplifications were detected by real-time turbidity using a turbidimeter and visual inspection of color change. The assay had an equivalent detection limit of 1.0 pg of genomic DNA using a turbidimeter whereas it was 10 pg with visual inspection, and it showed specificity against 49 strains of 44 pathogens, including M. tuberculosis complex. The expected LAMP products were confirmed through identical melting curves in real-time LAMP procedures. We employed the Procedure for Ultra Rapid Extraction (PURE) kit to isolate mycobacterial DNA and found that the highest sensitivity limit with a minimum total cell count of mycobacterium (including DNA purification with PURE) was up to 1 × 103 cells/reaction, based on color changes under natural light with FDA reagents. The detection limit of this procedure when applied to artificial serum, urine, cerebrospinal fluid, and bronchoalveolar lavage fluid samples was also about 1 × 103 cells/reaction. Therefore, this substitute method using conventional culture or clinical specimens followed by LAMP combined with PURE could be a powerful tool to enable the rapid identification of M. bovis BCG as point-of-care testing. It is suitable for practical use not only in resource-limited situations, but also in any clinical situation

  20. The Joint African Radiometric Propagation Measurement Programme

    NASA Astrophysics Data System (ADS)

    Arbesser-Rastburg, B.; Zaks, C.; Rogers, D. V.; McCarthy, D. K.; Allnutt, J. E.

    1990-06-01

    This paper summarizes the principal aspects of a major cooperative radiowave propagation experiment that was designed to collect data for improving rain attenuation prediction models for tropical Africa. A pressing need for such data had previously been identified by Resolution 79 of the CCIR. In a unique joint arrangement with three African governments, Intelsat, Comsat, the U.S. Agency for International Development, the U.S. National Telecommunications and Information Administration and the U.S. Telecommunications Training Institute (USTTI) collaborated in setting up a Ku-band radiometric measurement campaign in Cameroon, Kenya and Nigeria. A brief historical overview is given, together with the major technical parameters of the sites and the equipment installed there. The anticipated characteristics of the three locations are outlined with regard to meteorological and propagation conditions, and some preliminary indications of the results are presented based on an inspection of the early event data.

  1. FPGA-based data processing module design of on-board radiometric calibration in visible/near infrared bands

    NASA Astrophysics Data System (ADS)

    Zhou, Guoqing; Li, Chenyang; Yue, Tao; Liu, Na; Jiang, Linjun; Sun, Yue; Li, Mingyan

    2015-12-01

    FPGA technology has long been applied to on-board radiometric calibration data processing however the integration of FPGA program is not good enough. For example, some sensors compressed remote sensing images and transferred to ground station to calculate the calibration coefficients. It will affect the timeliness of on-board radiometric calibration. This paper designs an integrated flow chart of on-board radiometric calibration. Building FPGA-based radiometric calibration data processing modules uses system generator. Thesis focuses on analyzing the calculation accuracy of FPGA-based two-point method and verifies the feasibility of this method. Calibration data was acquired by hardware platform which was built using integrating sphere, CMOS camera (canon 60d), ASD spectrometers and light filter (center wavelength: 690nm, bandwidth: 45nm). The platform can simulate single-band on-board radiometric calibration data acquisition in visible/near infrared band. Making an experiment of calibration coefficients calculation uses obtained data and FPGA modules. Experimental results show that: the camera linearity is above 99% meeting the experimental requirement. Compares with MATLAB the calculation accuracy of two-point method by FPGA are as follows: the error of gain value is 0.0053%; the error of offset value is 0.00038719%. Those results meet experimental accuracy requirement.

  2. A Rapid and Improved Method to Generate Recombinant Dengue Virus Vaccine Candidates.

    PubMed

    Govindarajan, Dhanasekaran; Guan, Liming; Meschino, Steven; Fridman, Arthur; Bagchi, Ansu; Pak, Irene; Meulen, Jan Ter; Casimiro, Danilo R; Bett, Andrew J

    2016-01-01

    Dengue is one of the most important mosquito-borne infections accounting for severe morbidity and mortality worldwide. Recently, the tetravalent chimeric live attenuated Dengue vaccine Dengvaxia® was approved for use in several dengue endemic countries. In general, live attenuated vaccines (LAV) are very efficacious and offer long-lasting immunity against virus-induced disease. Rationally designed LAVs can be generated through reverse genetics technology, a method of generating infectious recombinant viruses from full length cDNA contained in bacterial plasmids. In vitro transcribed (IVT) viral RNA from these infectious clones is transfected into susceptible cells to generate recombinant virus. However, the generation of full-length dengue virus cDNA clones can be difficult due to the genetic instability of viral sequences in bacterial plasmids. To circumvent the need for a single plasmid containing a full length cDNA, in vitro ligation of two or three cDNA fragments contained in separate plasmids can be used to generate a full-length dengue viral cDNA template. However, in vitro ligation of multiple fragments often yields low quality template for IVT reactions, resulting in inconsistent low yield RNA. These technical difficulties make recombinant virus recovery less efficient. In this study, we describe a simple, rapid and efficient method of using LONG-PCR to recover recombinant chimeric Yellow fever dengue (CYD) viruses as potential dengue vaccine candidates. Using this method, we were able to efficiently generate several viable recombinant viruses without introducing any artificial mutations into the viral genomes. We believe that the techniques reported here will enable rapid and efficient recovery of recombinant flaviviruses for evaluation as vaccine candidates and, be applicable to the recovery of other RNA viruses. PMID:27008550

  3. Effect of formulated ingredients on rapidly disintegrating oral tablets prepared by the crystalline transition method.

    PubMed

    Sugimoto, Masaaki; Narisawa, Shinji; Matsubara, Koji; Yoshino, Hiroyuki; Nakano, Minoru; Handa, Tetsurou

    2006-02-01

    The aim of this article was to determine the optimal ingredients for the rapidly disintegrating oral tablets prepared by the crystalline transition method (CT method). The effect of ingredients (diluent, active drug substance and amorphous sugar) on the characteristics of the tablets was investigated. The ingredients were compressed and the resultant tablets were stored under various conditions. The oral disintegration time of the tablet significantly depended on diluents, due to differences in the penetration of a small amount of water in the mouth and the viscous area formed inside the tablet. The oral disintegration time was 10-30 s for tablets with a tensile strength of approximately 1 MPa, when erythritol, mannitol or xylitol was used as the diluent. The increase in the tensile strength of tablets containing highly water-soluble active drug substances during storage was as large as that of tablets without active drug substances, while the increase in the tensile strength of tablets containing low water-soluble active drug substances was small. It was therefore found that highly water-soluble active drug substances were more suitable for the formulation prepared by the CT method than low water-soluble active drug substances. Irrespective of the type of amorphous sugar (amorphous sucrose, lactose or maltose) used, the porosity of tablets with 1 MPa of tensile strength was 30-40%, and their oral disintegration time was 10-20 s. The optimal ingredients for rapidly disintegrating oral tablets with reasonable tensile strength and disintegration time were therefore determined from these results. PMID:16462059

  4. A Method to Represent Heterogeneous Materials for Rapid Prototyping: The Matryoshka Approach

    PubMed Central

    Lei, Shuangyan; Frank, Matthew C.; Anderson, Donald D.; Brown, Thomas D.

    2015-01-01

    Purpose The purpose of this paper is to present a new method for representing heterogeneous materials using nested STL shells, based, in particular, on the density distributions of human bones. Design/methodology/approach Nested STL shells, called Matryoshka models, are described, based on their namesake Russian nesting dolls. In this approach, polygonal models, such as STL shells, are “stacked” inside one another to represent different material regions. The Matryoshka model addresses the challenge of representing different densities and different types of bone when reverse engineering from medical images. The Matryoshka model is generated via an iterative process of thresholding the Hounsfield Unit (HU) data using computed tomography (CT), thereby delineating regions of progressively increasing bone density. These nested shells can represent regions starting with the medullary (bone marrow) canal, up through and including the outer surface of the bone. Findings The Matryoshka approach introduced can be used to generate accurate models of heterogeneous materials in an automated fashion, avoiding the challenge of hand-creating an assembly model for input to multi-material additive or subtractive manufacturing. Originality/Value This paper presents a new method for describing heterogeneous materials: in this case, the density distribution in a human bone. The authors show how the Matryoshka model can be used to plan harvesting locations for creating custom rapid allograft bone implants from donor bone. An implementation of a proposed harvesting method is demonstrated, followed by a case study using subtractive rapid prototyping to harvest a bone implant from a human tibia surrogate. PMID:26120277

  5. A Rapid and Improved Method to Generate Recombinant Dengue Virus Vaccine Candidates

    PubMed Central

    Govindarajan, Dhanasekaran; Guan, Liming; Meschino, Steven; Fridman, Arthur; Bagchi, Ansu; Pak, Irene; ter Meulen, Jan; Casimiro, Danilo R.; Bett, Andrew J.

    2016-01-01

    Dengue is one of the most important mosquito-borne infections accounting for severe morbidity and mortality worldwide. Recently, the tetravalent chimeric live attenuated Dengue vaccine Dengvaxia® was approved for use in several dengue endemic countries. In general, live attenuated vaccines (LAV) are very efficacious and offer long-lasting immunity against virus-induced disease. Rationally designed LAVs can be generated through reverse genetics technology, a method of generating infectious recombinant viruses from full length cDNA contained in bacterial plasmids. In vitro transcribed (IVT) viral RNA from these infectious clones is transfected into susceptible cells to generate recombinant virus. However, the generation of full-length dengue virus cDNA clones can be difficult due to the genetic instability of viral sequences in bacterial plasmids. To circumvent the need for a single plasmid containing a full length cDNA, in vitro ligation of two or three cDNA fragments contained in separate plasmids can be used to generate a full-length dengue viral cDNA template. However, in vitro ligation of multiple fragments often yields low quality template for IVT reactions, resulting in inconsistent low yield RNA. These technical difficulties make recombinant virus recovery less efficient. In this study, we describe a simple, rapid and efficient method of using LONG-PCR to recover recombinant chimeric Yellow fever dengue (CYD) viruses as potential dengue vaccine candidates. Using this method, we were able to efficiently generate several viable recombinant viruses without introducing any artificial mutations into the viral genomes. We believe that the techniques reported here will enable rapid and efficient recovery of recombinant flaviviruses for evaluation as vaccine candidates and, be applicable to the recovery of other RNA viruses. PMID:27008550

  6. Rapid Method for Quantifying the Extent of Methionine Oxidation in Intact Calmodulin

    SciTech Connect

    Galeva, Nadezhda A.; Esch, S Wynn; Williams, Todd D.; Markillie, Lye MENG.; Squier, Thomas C.

    2005-09-01

    We have developed a method for rapidly quantifying the extent to which the functionally important Met144 and Met145 residues near the C-terminus of calmodulin (CaM) are converted to the corresponding sulfoxides, Met(O). The method utilizes a whole protein collision induced dissociation (CID) approach on an electrospray ionization quadrupole time-of-flight (ESI-Q-TOF) mass spectrometer. Using standards of CaM oxidized by hydrogen peroxide (H2O2) or peroxynitrite (ONOO-), we demonstrated that CID fragmentation of the protein ions resulted in a series of C-terminal singly charged y1?y15 ions. Fragments larger than y4 exhibited mass shifts of +16 or +32 Da, corresponding to oxidation of one or two methionines, respectively. To assess the extent of oxidative modification for Met144 and Met145 to Met(O), we averaged the ratio of intensities for yn, yn +16, and yn +32 ions, where n = 6?9. By alternating MS and CID scans at low and high collision energies, this technique allowed us to rapidly determine both the distribution of intact CaM oxiforms and the extent of oxidative modification in the C-terminal region of the protein in a single run. We have applied the method to studies of the repair of fully oxidized CaM by methionine sulfoxide reductases (MsrA and MsrB), which normally function in concert to reduce the S and R stereoisomers of methionine sulfoxide. We found that repair of Met(O)144 and Met(O)145 did not go to completion, but was more efficient than average Met repair. Absence of complete repair is consistent with previous studies showing that accumulation of methionine sulfoxide in CaM can occur during aging.

  7. A rapid and automated relocation method of an AFM probe for high-resolution imaging.

    PubMed

    Zhou, Peilin; Yu, Haibo; Shi, Jialin; Jiao, Niandong; Wang, Zhidong; Wang, Yuechao; Liu, Lianqing

    2016-09-30

    The atomic force microscope (AFM) is one of the most powerful tools for high-resolution imaging and high-precision positioning for nanomanipulation. The selection of the scanning area of the AFM depends on the use of the optical microscope. However, the resolution of an optical microscope is generally no larger than 200 nm owing to wavelength limitations of visible light. Taking into consideration the two determinants of relocation-relative angular rotation and positional offset between the AFM probe and nano target-it is therefore extremely challenging to precisely relocate the AFM probe to the initial scan/manipulation area for the same nano target after the AFM probe has been replaced, or after the sample has been moved. In this paper, we investigate a rapid automated relocation method for the nano target of an AFM using a coordinate transformation. The relocation process is both simple and rapid; moreover, multiple nano targets can be relocated by only identifying a pair of reference points. It possesses a centimeter-scale location range and nano-scale precision. The main advantages of this method are that it overcomes the limitations associated with the resolution of optical microscopes, and that it is label-free on the target areas, which means that it does not require the use of special artificial markers on the target sample areas. Relocation experiments using nanospheres, DNA, SWCNTs, and nano patterns amply demonstrate the practicality and efficiency of the proposed method, which provides technical support for mass nanomanipulation and detection based on AFM for multiple nano targets that are widely distributed in a large area. PMID:27559679

  8. Radiometric consistency assessment of hyperspectral infrared sounders

    NASA Astrophysics Data System (ADS)

    Wang, L.; Han, Y.; Jin, X.; Chen, Y.; Tremblay, D. A.

    2015-07-01

    The radiometric and spectral consistency among the Atmospheric Infrared Sounder (AIRS), the Infrared Atmospheric Sounding Interferometer (IASI), and the Cross-track Infrared Sounder (CrIS) is fundamental for the creation of long-term infrared (IR) hyperspectral radiance benchmark datasets for both inter-calibration and climate-related studies. In this study, the CrIS radiance measurements on Suomi National Polar-orbiting Partnership (SNPP) satellite are directly compared with IASI on MetOp-A and -B at the finest spectral scale and with AIRS on Aqua in 25 selected spectral regions through one year of simultaneous nadir overpass (SNO) observations to evaluate radiometric consistency of these four hyperspectral IR sounders. The spectra from different sounders are paired together through strict spatial and temporal collocation. The uniform scenes are selected by examining the collocated Visible Infrared Imaging Radiometer Suite (VIIRS) pixels. Their brightness temperature (BT) differences are then calculated by converting the spectra onto common spectral grids. The results indicate that CrIS agrees well with IASI on MetOp-A and IASI on MetOp-B at the longwave IR (LWIR) and middle-wave IR (MWIR) bands with 0.1-0.2 K differences. There are no apparent scene-dependent patterns for BT differences between CrIS and IASI for individual spectral channels. CrIS and AIRS are compared at the 25 spectral regions for both Polar and Tropical SNOs. The combined global SNO datasets indicate that, the CrIS-AIRS BT differences are less than or around 0.1 K among 21 of 25 comparison spectral regions and they range from 0.15 to 0.21 K in the remaining 4 spectral regions. CrIS-AIRS BT differences in some comparison spectral regions show weak scene-dependent features.

  9. Radiometric consistency assessment of hyperspectral infrared sounders

    NASA Astrophysics Data System (ADS)

    Wang, L.; Han, Y.; Jin, X.; Chen, Y.; Tremblay, D. A.

    2015-11-01

    The radiometric and spectral consistency among the Atmospheric Infrared Sounder (AIRS), the Infrared Atmospheric Sounding Interferometer (IASI), and the Cross-track Infrared Sounder (CrIS) is fundamental for the creation of long-term infrared (IR) hyperspectral radiance benchmark data sets for both intercalibration and climate-related studies. In this study, the CrIS radiance measurements on Suomi National Polar-orbiting Partnership (SNPP) satellite are directly compared with IASI on MetOp-A and MetOp-B at the finest spectral scale and with AIRS on Aqua in 25 selected spectral regions through simultaneous nadir overpass (SNO) observations in 2013, to evaluate radiometric consistency of these four hyperspectral IR sounders. The spectra from different sounders are paired together through strict spatial and temporal collocation. The uniform scenes are selected by examining the collocated Visible Infrared Imaging Radiometer Suite (VIIRS) pixels. Their brightness temperature (BT) differences are then calculated by converting the spectra onto common spectral grids. The results indicate that CrIS agrees well with IASI on MetOp-A and IASI on MetOp-B at the long-wave IR (LWIR) and middle-wave IR (MWIR) bands with 0.1-0.2 K differences. There are no apparent scene-dependent patterns for BT differences between CrIS and IASI for individual spectral channels. CrIS and AIRS are compared at the 25 spectral regions for both polar and tropical SNOs. The combined global SNO data sets indicate that the CrIS-AIRS BT differences are less than or around 0.1 K among 21 of 25 spectral regions and they range from 0.15 to 0.21 K in the remaining four spectral regions. CrIS-AIRS BT differences in some comparison spectral regions show weak scene-dependent features.

  10. Radiometric--microbiologic assay of vitamin B-6: application to food analysis

    SciTech Connect

    Guilarte, T.R.; Shane, B.; McIntyre, P.A.

    1981-11-01

    A radiometric microbiologic assay for vitamin B-6 was applied to food analysis. The method was shown to be specific, reproducible and simpler than the standard turbidimetric microbiologic technique. The analysis of seven commercially available breakfast cereals was compared to a high performance liquid chromatography method. Three out of the seven cereals agreed when assayed with both methods (P greater than 0.1). Four cereals, however, differed in value considerably (P less than 0.05). Further studies are required to determine whether these differences were due to different extraction procedures used. The study showed that the new radiometric-microbiologic method can be used to measure total vitamin B-6 or, combined with a column separation procedure, to analyze for specific forms of the vitamin.

  11. Experimental study of radiometric forces with comparison to computational results

    NASA Astrophysics Data System (ADS)

    Selden, Nathaniel P.

    A study of the radiometric forces on heated plates has been conducted both experimentally and computationally. The experiments were carried out at USC in two vacuum chambers up to a maximum pressure of 6 Pa for various carrier gases. The computations were performed with both the DSMC and ES-BGK methods for a 2-D gas flow over a comparable range of pressures. It is shown that the radiometric devices provide maximum force at a Knudsen number approximating 0.1. Of the various gases tested, helium provides the largest peak force. Qualitatively, the experimental data and computational results are similar. A lack of experimental data on gas-surface accommodation and flow three-dimensionality yields up to a 40% difference in the magnitude of the measured and computed forces, but it is shown that this discrepancy can be used to predict accommodation values. Comparison of four geometric configurations has shown that the effect of the area is significant at pressures up to where the force is maximum. It is also demonstrated that the size of the chamber in which the radiometer resides is of primary importance, where the chamber dimensions are inversely related to the generated force. Finally, simulation of multi-vane configurations have shown that the optimal spacing of vanes can be tailored for specific uses; for maximum force production a tight spacing should be used, while maximum efficiency requires spacing on the order of a vane dimension. While the results so far are encouraging, they are far from complete. Further improvements would include: a new experimental setup to reduce uncertainty with highly accurate temperature control and measurement, an in situ way to prepare the surface as well as measure its cleanliness, and an in depth iterative computational study observing the impact of multiple radiometer vanes at numerous seperations.

  12. A rapid fluorescence based method for the quantitative analysis of cell culture media photo-degradation.

    PubMed

    Calvet, Amandine; Li, Boyan; Ryder, Alan G

    2014-01-01

    Cell culture media are very complex chemical mixtures that are one of the most important aspects in biopharmaceutical manufacturing. The complex composition of many media leads to materials that are inherently unstable and of particular concern, is media photo-damage which can adversely affect cell culture performance. This can be significant particularly with small scale transparent bioreactors and media containers are used for process development or research. Chromatographic and/or mass spectrometry based analyses are often time-consuming and expensive for routine high-throughput media analysis particularly during scale up or development processes. Fluorescence excitation-emission matrix (EEM) spectroscopy combined with multi-way chemometrics is a robust methodology applicable for the analysis of raw materials, media, and bioprocess broths. Here we demonstrate how EEM spectroscopy was used for the rapid, quantitative analysis of media degradation caused by ambient visible light exposure. The primary degradation pathways involve riboflavin (leading to the formation of lumichrome, LmC) which also causes photo-sensitised degradation of tryptophan, which was validated using high pressure liquid chromatography (HPLC) measurements. The use of PARallel FACtor analysis (PARAFAC), multivariate curve resolution (MCR), and N-way partial least squares (NPLS) enabled the rapid and easy monitoring of the compositional changes in tryptophan (Trp), tyrosine (Tyr), and riboflavin (Rf) concentration caused by ambient light exposure. Excellent agreement between HPLC and EEM methods was found for the change in Trp, Rf, and LmC concentrations. PMID:24356227

  13. Bacterial Cytological Profiling (BCP) as a Rapid and Accurate Antimicrobial Susceptibility Testing Method for Staphylococcus aureus

    PubMed Central

    Quach, D.T.; Sakoulas, G.; Nizet, V.; Pogliano, J.; Pogliano, K.

    2016-01-01

    Successful treatment of bacterial infections requires the timely administration of appropriate antimicrobial therapy. The failure to initiate the correct therapy in a timely fashion results in poor clinical outcomes, longer hospital stays, and higher medical costs. Current approaches to antibiotic susceptibility testing of cultured pathogens have key limitations ranging from long run times to dependence on prior knowledge of genetic mechanisms of resistance. We have developed a rapid antimicrobial susceptibility assay for Staphylococcus aureus based on bacterial cytological profiling (BCP), which uses quantitative fluorescence microscopy to measure antibiotic induced changes in cellular architecture. BCP discriminated between methicillin-susceptible (MSSA) and -resistant (MRSA) clinical isolates of S. aureus (n = 71) within 1–2 h with 100% accuracy. Similarly, BCP correctly distinguished daptomycin susceptible (DS) from daptomycin non-susceptible (DNS) S. aureus strains (n = 20) within 30 min. Among MRSA isolates, BCP further identified two classes of strains that differ in their susceptibility to specific combinations of beta-lactam antibiotics. BCP provides a rapid and flexible alternative to gene-based susceptibility testing methods for S. aureus, and should be readily adaptable to different antibiotics and bacterial species as new mechanisms of resistance or multidrug-resistant pathogens evolve and appear in mainstream clinical practice. PMID:26981574

  14. Bacterial Cytological Profiling (BCP) as a Rapid and Accurate Antimicrobial Susceptibility Testing Method for Staphylococcus aureus.

    PubMed

    Quach, D T; Sakoulas, G; Nizet, V; Pogliano, J; Pogliano, K

    2016-02-01

    Successful treatment of bacterial infections requires the timely administration of appropriate antimicrobial therapy. The failure to initiate the correct therapy in a timely fashion results in poor clinical outcomes, longer hospital stays, and higher medical costs. Current approaches to antibiotic susceptibility testing of cultured pathogens have key limitations ranging from long run times to dependence on prior knowledge of genetic mechanisms of resistance. We have developed a rapid antimicrobial susceptibility assay for Staphylococcus aureus based on bacterial cytological profiling (BCP), which uses quantitative fluorescence microscopy to measure antibiotic induced changes in cellular architecture. BCP discriminated between methicillin-susceptible (MSSA) and -resistant (MRSA) clinical isolates of S. aureus (n = 71) within 1-2 h with 100% accuracy. Similarly, BCP correctly distinguished daptomycin susceptible (DS) from daptomycin non-susceptible (DNS) S. aureus strains (n = 20) within 30 min. Among MRSA isolates, BCP further identified two classes of strains that differ in their susceptibility to specific combinations of beta-lactam antibiotics. BCP provides a rapid and flexible alternative to gene-based susceptibility testing methods for S. aureus, and should be readily adaptable to different antibiotics and bacterial species as new mechanisms of resistance or multidrug-resistant pathogens evolve and appear in mainstream clinical practice. PMID:26981574

  15. Performance of a Micro-UAV lifting system built with the usage of rapid prototyping methods

    NASA Astrophysics Data System (ADS)

    Dalewski, R. T.; Gumowski, K.; Barczak, T.; Godek, J.

    2014-08-01

    This article presents results of the aerodynamic testing of a micro unmanned aerial vehicle rotor efficiency. The rotors were prepared as a set of two rotors in a counter-rotating ducted drive. Prototypes of the drives were made using two rapid prototyping techniques - FDM - fused deposition modelling method and SLS - selective laser sintering. Rotors were made then treated by introducing additional finishing cyanoacrylate coating and abrasive processing. Main differences between those models were observed in fan shape, porosity, surface roughness and mechanical properties - stiffness. An influence of these factors was observed on an aerodynamic efficiency. For the obtained prototypes both simulations and experimental testing were conducted with thrust, power, torque measurements, as well as the measurement of velocity and pressure distribution at the outlet of the duct. The results show the possibility of using rapid prototyping techniques to produce prototypes of drives operating in the low and medium Reynolds numbers (6000-60000), and the aerodynamic shape relevant factors affecting the preparation and performance of such drives. In addition, simulation studies were performed using the Fluent environment where experimental results were confronted with the results of simulation studies.

  16. A rapid and efficient inoculation method for Tomato spotted wilt tospovirus.

    PubMed

    Mandal, B; Csinos, A S; Martinez-Ochoa, N; Pappu, H R

    2008-04-01

    A rapid and efficient method of inoculation for Tomato spotted wilt tospovirus (TSWV) was achieved by applying the inoculum with a device consisting of a spray gun, an atomizer and a CO2-powered sprayer. The inoculum contained infected leaf sap prepared in 0.1M phosphate buffer, pH 7.0, 0.2% sodium sulfite and 0.01 M 2-mercaptoethanol (1g: 10 ml) and 1% each of Celite 545 and Carborundum 320 grit. The spray application of chilled inoculum at the rate of 1.1 ml/plant and at an air pressure of 4.1 bar resulted in systemic infection nearly to a 100% of the tobacco (Nicotiana tabacum) plants inoculated. The inoculation procedure was successfully applied to two other important host species of TSWV, peanut (Arachis hypogaea) and tomato (Lycopersicon esculentum), where 75.0-100% and 72.2-91.6% plants developed systemic infection, respectively. The approach facilitated a much faster inoculation of test plants with TSWV as it was estimated to be about 50 times quicker (depending on the plant species) than the hand inoculation. The procedure is suitable for rapid and simultaneous inoculation of a large number of test plants with TSWV and should facilitate screening of germplasm and breeding lines for virus resistance. PMID:18272238

  17. A Rapid and Efficient Method for Evaluation of Suspect Testimony: Palynological Scanning.

    PubMed

    Wiltshire, Patricia E J; Hawksworth, David L; Edwards, Kevin J

    2015-11-01

    A rapid method for evaluating suspect testimony is valuable at any stage in an inquiry and can result in a change of direction in an investigation. Rape cases, in particular, can present problems where a defendant renders DNA analysis redundant by claiming that the claimant consented to have sexual relations. Forensic palynology is valuable in confirming or eliminating locations as being crime scenes, thus checking the testimony of both parties. In contrast to some forensic disciplines, forensic palynology can provide critical information without time-consuming full analysis. Two cases are described where the palynological assemblages from comparator samples of pertinent places were compared with those obtained from clothing of claimants and defendants. The results of rapid microscopical scanning of relevant preparations led to early confessions, thus obviating the need for costly analyses and protracted court proceedings. A third case demonstrates the unbiased nature of this technique where a man, although innocent of any offense, lied about having visited the crime scene for fear of prosecution. This highlights the need for sensitive policing in claims of rape. PMID:26212473

  18. Rapid liquid chromatographic method for the determination of roflumilast in the presence of degradation products.

    PubMed

    Barhate, V D; Deosthalee, Priya

    2010-05-01

    A forced degradation study on roflumilast drug substance was conducted under the conditions of hydrolysis, oxidation, thermal and photolysis. The method was developed and optimized by analyzing forcefully degraded samples. The best separation was achieved on a Zorbax SB C18 1.8 µm column with 0.005 M ammonium formate buffer pH 3.5 and acetonitrile as mobile phase in a 13 min run time. The proposed method was able to resolve all the possible degradation products formed during stress study. The drug was stable to neutral, thermal and photolytic conditions but unstable to acidic, alkaline and oxidative conditions at 80° for 24 h. The degradation products resulting from stress study did not interfere in assay and related substances of roflumilast and thus the method can be regarded as stability indicating. An alternate method was also developed on a conventional 250×4.6 mm, 5 µm column wherein runtime was 38 min. Thus rapid resolution high throughput column was able to reduce the run time from 38 min to 13 min. PMID:21188058

  19. Rapid fusion method for the determination of refractory thorium and uranium isotopes in soil samples

    SciTech Connect

    Maxwell, Sherrod L.; Hutchison, Jay B.; McAlister, Daniel R.

    2015-02-14

    Recently, approximately 80% of participating laboratories failed to accurately determine uranium isotopes in soil samples in the U.S Department of Energy Mixed Analyte Performance Evaluation Program (MAPEP) Session 30, due to incomplete dissolution of refractory particles in the samples. Failing laboratories employed acid dissolution methods, including hydrofluoric acid, to recover uranium from the soil matrix. The failures illustrate the importance of rugged soil dissolution methods for the accurate measurement of analytes in the sample matrix. A new rapid fusion method has been developed by the Savannah River National Laboratory (SRNL) to prepare 1-2 g soil sample aliquots very quickly, with total dissolution of refractory particles. Soil samples are fused with sodium hydroxide at 600 ºC in zirconium crucibles to enable complete dissolution of the sample. Uranium and thorium are separated on stacked TEVA and TRU extraction chromatographic resin cartridges, prior to isotopic measurements by alpha spectrometry on cerium fluoride microprecipitation sources. Plutonium can also be separated and measured using this method. Batches of 12 samples can be prepared for measurement in <5 hours.

  20. Rapid fusion method for the determination of refractory thorium and uranium isotopes in soil samples

    DOE PAGESBeta

    Maxwell, Sherrod L.; Hutchison, Jay B.; McAlister, Daniel R.

    2015-02-14

    Recently, approximately 80% of participating laboratories failed to accurately determine uranium isotopes in soil samples in the U.S Department of Energy Mixed Analyte Performance Evaluation Program (MAPEP) Session 30, due to incomplete dissolution of refractory particles in the samples. Failing laboratories employed acid dissolution methods, including hydrofluoric acid, to recover uranium from the soil matrix. The failures illustrate the importance of rugged soil dissolution methods for the accurate measurement of analytes in the sample matrix. A new rapid fusion method has been developed by the Savannah River National Laboratory (SRNL) to prepare 1-2 g soil sample aliquots very quickly, withmore » total dissolution of refractory particles. Soil samples are fused with sodium hydroxide at 600 ºC in zirconium crucibles to enable complete dissolution of the sample. Uranium and thorium are separated on stacked TEVA and TRU extraction chromatographic resin cartridges, prior to isotopic measurements by alpha spectrometry on cerium fluoride microprecipitation sources. Plutonium can also be separated and measured using this method. Batches of 12 samples can be prepared for measurement in <5 hours.« less

  1. A rapid method to achieve aero-engine blade form detection.

    PubMed

    Sun, Bin; Li, Bing

    2015-01-01

    This paper proposes a rapid method to detect aero-engine blade form, according to the characteristics of an aero-engine blade surface. This method first deduces an inclination error model in free-form surface measurements based on the non-contact laser triangulation principle. Then a four-coordinate measuring system was independently developed, a special fixture was designed according to the blade shape features, and a fast measurement of the blade features path was planned. Finally, by using the inclination error model for correction of acquired data, the measurement error that was caused by tilt form is compensated. As a result the measurement accuracy of the Laser Displacement Sensor was less than 10 μm. After the experimental verification, this method makes full use of optical non-contact measurement fast speed, high precision and wide measuring range of features. Using a standard gauge block as a measurement reference, the coordinate system conversion data is simple and practical. It not only improves the measurement accuracy of the blade surface, but also its measurement efficiency. Therefore, this method increases the value of the measurement of complex surfaces. PMID:26039420

  2. A method for rapid quantitative assessment of biofilms with biomolecular staining and image analysis

    SciTech Connect

    Larimer, Curtis J.; Winder, Eric M.; Jeters, Robert T.; Prowant, Matthew S.; Nettleship, Ian; Addleman, Raymond S.; Bonheyo, George T.

    2015-12-07

    Here, the accumulation of bacteria in surface attached biofilms, or biofouling, can be detrimental to human health, dental hygiene, and many industrial processes. A critical need in identifying and preventing the deleterious effects of biofilms is the ability to observe and quantify their development. Analytical methods capable of assessing early stage fouling are cumbersome or lab-confined, subjective, and qualitative. Herein, a novel photographic method is described that uses biomolecular staining and image analysis to enhance contrast of early stage biofouling. A robust algorithm was developed to objectively and quantitatively measure surface accumulation of Pseudomonas putida from photographs and results were compared to independent measurements of cell density. Results from image analysis quantified biofilm growth intensity accurately and with approximately the same precision of the more laborious cell counting method. This simple method for early stage biofilm detection enables quantifiable measurement of surface fouling and is flexible enough to be applied from the laboratory to the field. Broad spectrum staining highlights fouling biomass, photography quickly captures a large area of interest, and image analysis rapidly quantifies fouling in the image.

  3. Simple, rapid method for direct isolation of nucleic acids from aquatic environments.

    PubMed Central

    Somerville, C C; Knight, I T; Straube, W L; Colwell, R R

    1989-01-01

    Direct isolation of nucleic acids from the environment may be useful in several respects, including the estimation of total biomass, detection of specific organisms and genes, estimations of species diversity, and cloning applications. We have developed a method that facilitates the concentration of microorganisms from aquatic samples and the extraction of their nucleic acids. Natural water samples of 350 to greater than 1,000 ml are concentrated on a single cylindrical filter membrane (type SVGS01015; Millipore Corp., Bedford, Mass.), and cell lysis and proteolysis are carried out within the filter housing. Crude, high-molecular-weight nucleic acid solutions are then drawn off the filter. These solutions can be immediately analyzed, concentrated, or purified, depending on the intended application. The method is simple, rapid, and economical and provides high-molecular-weight chromosomal DNA, plasmid DNA, and speciated RNAs which comigrate with 5S, 16S, and 23S rRNAs. The methods presented here should prove useful in studying both the ecology and the phylogeny of microbes that resist classical culture methods. Images PMID:2467621

  4. [A rapid dialysis method for analysis of artificial sweeteners in food].

    PubMed

    Tahara, Shoichi; Fujiwara, Takushi; Yasui, Akiko; Hayafuji, Chieko; Kobayashi, Chigusa; Uematsu, Yoko

    2014-01-01

    A simple and rapid dialysis method was developed for the extraction and purification of four artificial sweeteners, namely, sodium saccharin (Sa), acesulfame potassium (AK), aspartame (APM), and dulcin (Du), which are present in various foods. Conventional dialysis uses a membrane dialysis tube approximately 15 cm in length and is carried out over many hours owing to the small membrane area and owing to inefficient mixing. In particular, processed cereal products such as cookies required treatment for 48 hours to obtain satisfactory recovery of the compounds. By increasing the tube length to 55 cm and introducing efficient mixing by inversion at half-hour intervals, the dialysis times of the four artificial sweeteners, spiked at 0.1 g/kg in the cookie, were shortened to 4 hours. Recovery yields of 88.9-103.2% were obtained by using the improved method, whereas recovery yields were low (65.5-82.0%) by the conventional method. Recovery yields (%) of Sa, AK, APM, and Du, spiked at 0.1 g/kg in various foods, were 91.6-100.1, 93.9-100.1, 86.7-100.0 and 88.7-104.7 using the improved method. PMID:24598222

  5. A Rapid Method to Achieve Aero-Engine Blade Form Detection

    PubMed Central

    Sun, Bin; Li, Bing

    2015-01-01

    This paper proposes a rapid method to detect aero-engine blade form, according to the characteristics of an aero-engine blade surface. This method first deduces an inclination error model in free-form surface measurements based on the non-contact laser triangulation principle. Then a four-coordinate measuring system was independently developed, a special fixture was designed according to the blade shape features, and a fast measurement of the blade features path was planned. Finally, by using the inclination error model for correction of acquired data, the measurement error that was caused by tilt form is compensated. As a result the measurement accuracy of the Laser Displacement Sensor was less than 10 μm. After the experimental verification, this method makes full use of optical non-contact measurement fast speed, high precision and wide measuring range of features. Using a standard gauge block as a measurement reference, the coordinate system conversion data is simple and practical. It not only improves the measurement accuracy of the blade surface, but also its measurement efficiency. Therefore, this method increases the value of the measurement of complex surfaces. PMID:26039420

  6. A method for rapid quantitative assessment of biofilms with biomolecular staining and image analysis

    DOE PAGESBeta

    Larimer, Curtis J.; Winder, Eric M.; Jeters, Robert T.; Prowant, Matthew S.; Nettleship, Ian; Addleman, Raymond S.; Bonheyo, George T.

    2015-12-07

    Here, the accumulation of bacteria in surface attached biofilms, or biofouling, can be detrimental to human health, dental hygiene, and many industrial processes. A critical need in identifying and preventing the deleterious effects of biofilms is the ability to observe and quantify their development. Analytical methods capable of assessing early stage fouling are cumbersome or lab-confined, subjective, and qualitative. Herein, a novel photographic method is described that uses biomolecular staining and image analysis to enhance contrast of early stage biofouling. A robust algorithm was developed to objectively and quantitatively measure surface accumulation of Pseudomonas putida from photographs and results weremore » compared to independent measurements of cell density. Results from image analysis quantified biofilm growth intensity accurately and with approximately the same precision of the more laborious cell counting method. This simple method for early stage biofilm detection enables quantifiable measurement of surface fouling and is flexible enough to be applied from the laboratory to the field. Broad spectrum staining highlights fouling biomass, photography quickly captures a large area of interest, and image analysis rapidly quantifies fouling in the image.« less

  7. A Rapid and Scalable Method for Multilocus Species Delimitation Using Bayesian Model Comparison and Rooted Triplets

    PubMed Central

    Fujisawa, Tomochika; Aswad, Amr; Barraclough, Timothy G.

    2016-01-01

    Multilocus sequence data provide far greater power to resolve species limits than the single locus data typically used for broad surveys of clades. However, current statistical methods based on a multispecies coalescent framework are computationally demanding, because of the number of possible delimitations that must be compared and time-consuming likelihood calculations. New methods are therefore needed to open up the power of multilocus approaches to larger systematic surveys. Here, we present a rapid and scalable method that introduces 2 new innovations. First, the method reduces the complexity of likelihood calculations by decomposing the tree into rooted triplets. The distribution of topologies for a triplet across multiple loci has a uniform trinomial distribution when the 3 individuals belong to the same species, but a skewed distribution if they belong to separate species with a form that is specified by the multispecies coalescent. A Bayesian model comparison framework was developed and the best delimitation found by comparing the product of posterior probabilities of all triplets. The second innovation is a new dynamic programming algorithm for finding the optimum delimitation from all those compatible with a guide tree by successively analyzing subtrees defined by each node. This algorithm removes the need for heuristic searches used by current methods, and guarantees that the best solution is found and potentially could be used in other systematic applications. We assessed the performance of the method with simulated, published, and newly generated data. Analyses of simulated data demonstrate that the combined method has favorable statistical properties and scalability with increasing sample sizes. Analyses of empirical data from both eukaryotes and prokaryotes demonstrate its potential for delimiting species in real cases. PMID:27055648

  8. A Rapid and Scalable Method for Multilocus Species Delimitation Using Bayesian Model Comparison and Rooted Triplets.

    PubMed

    Fujisawa, Tomochika; Aswad, Amr; Barraclough, Timothy G

    2016-09-01

    Multilocus sequence data provide far greater power to resolve species limits than the single locus data typically used for broad surveys of clades. However, current statistical methods based on a multispecies coalescent framework are computationally demanding, because of the number of possible delimitations that must be compared and time-consuming likelihood calculations. New methods are therefore needed to open up the power of multilocus approaches to larger systematic surveys. Here, we present a rapid and scalable method that introduces 2 new innovations. First, the method reduces the complexity of likelihood calculations by decomposing the tree into rooted triplets. The distribution of topologies for a triplet across multiple loci has a uniform trinomial distribution when the 3 individuals belong to the same species, but a skewed distribution if they belong to separate species with a form that is specified by the multispecies coalescent. A Bayesian model comparison framework was developed and the best delimitation found by comparing the product of posterior probabilities of all triplets. The second innovation is a new dynamic programming algorithm for finding the optimum delimitation from all those compatible with a guide tree by successively analyzing subtrees defined by each node. This algorithm removes the need for heuristic searches used by current methods, and guarantees that the best solution is found and potentially could be used in other systematic applications. We assessed the performance of the method with simulated, published, and newly generated data. Analyses of simulated data demonstrate that the combined method has favorable statistical properties and scalability with increasing sample sizes. Analyses of empirical data from both eukaryotes and prokaryotes demonstrate its potential for delimiting species in real cases. PMID:27055648

  9. Using the Dunhuang test site to monitor the radiometric stability of the ZY-3 multispectral sensor

    NASA Astrophysics Data System (ADS)

    Zhang, Xuewen; Han, Qijin; Liu, Li

    2014-11-01

    The ZY-3 satellite plays an important role in agriculture, forestry, water conservancy, ecological environment, and so on since its successfully running. In order to achieve continuity, stability and reliability of the remote sensing data, and improve quantitative application level of the ZY-3 satellite data, an accurate sensor radiometric calibration is essential. Because ZY-3 satellite doesn't have onboard calibration system, in-fight filed absolute radiometric calibration as a means to effective monitor the radiometric stability.This paper uses multi-day, multi-field at the Dunhuang test site to calibrate the ZY-3 multispectral sensor. The experiment obtained a synchronization measurement data on the August 18, 23 and 28, respectively. The two of ground surface were selected for measuring reflectance, which middling reflectance field (20%) and high reflectance field (40%). At the time of the ZY-3 overpass on the site, synchronous measure surface reflectance of ground targets, atmospheric optical characteristics parameters, such as atmospheric aerosol optical depth, atmospheric columnar water vapor content. Then use the radiative transfer model to estimate the top of atmosphere (TOA) radiance for MSS band. Radiometric calibration coefficient of MSS band was estimated by comparing the TOA radiance with average digital number of the MSS image. Based on multi-day, multi-field, and the real-time measurement at the Dunhuang site, radiometric calibration for ZY-3 MSS was successfully performed using reflectance-based method and calibration coefficients for MSS bands were obtained as well. According to contrast between in-fight calibration and the prelaunch, it was shown that the response of MSS changed at some extent after launch, especially band 1 and band 4. As a result, it was quite essential to update calibration coefficient timely and periodically in order to monitor the change of ZY-3 MSS better and to improve the quantitative application of MSS data as well.

  10. Rapid and alternative fabrication method for microfluidic paper based analytical devices.

    PubMed

    Malekghasemi, Soheil; Kahveci, Enver; Duman, Memed

    2016-10-01

    A major application of microfluidic paper-based analytical devices (µPADs) includes the field of point-of-care (POC) diagnostics. It is important for POC diagnostics to possess properties such as ease-of-use and low cost. However, µPADs need multiple instruments and fabrication steps. In this study, two different chemicals (Hexamethyldisilazane and Tetra-ethylorthosilicate) were used, and three different methods (heating, plasma treatment, and microwave irradiation) were compared to develop µPADs. Additionally, an inkjet-printing technique was used for generating a hydrophilic channel and printing certain chemical agents on different regions of a modified filter paper. A rapid and effective fabrication method to develop µPADs within 10min was introduced using an inkjet-printing technique in conjunction with a microwave irradiation method. Environmental scanning electron microscope (ESEM) and x-ray photoelectron spectroscopy (XPS) were used for morphology characterization and determining the surface chemical compositions of the modified filter paper, respectively. Contact angle measurements were used to fulfill the hydrophobicity of the treated filter paper. The highest contact angle value (141°±1) was obtained using the microwave irradiation method over a period of 7min, when the filter paper was modified by TEOS. Furthermore, by using this method, the XPS results of TEOS-modified filter paper revealed Si2p (23%) and Si-O bounds (81.55%) indicating the presence of Si-O-Si bridges and Si(OEt) groups, respectively. The ESEM results revealed changes in the porous structures of the papers and decreases in the pore sizes. Washburn assay measurements tested the efficiency of the generated hydrophilic channels in which similar water penetration rates were observed in the TEOS-modified filter paper and unmodified (plain) filter paper. The validation of the developed µPADs was performed by utilizing the rapid urease test as a model test system. The detection limit of

  11. Apparatus and method for rapid cooling of large area substrates in vacuum

    SciTech Connect

    Barth, Kurt L.; Enzenroth, Robert A.; Sampath, Walajabad S.

    2012-11-06

    The present invention is directed to an apparatus and method for rapid cooling of a large substrate in a vacuum environment. A first cooled plate is brought into close proximity with one surface of a flat substrate. The spatial volume between the first cooling plate and the substrate is sealed and brought to a higher pressure than the surrounding vacuum level to increase the cooling efficiency. A second cooled plate is brought into close proximity with the opposite surface of the flat substrate. A second spatial volume between the second cooling plate and the substrate is sealed and the gas pressure is equalized to the gas pressure in the first spatial volume. The equalization of the gas pressure on both sides of the flat substrate eliminates deflection of the substrate and bending stress in the substrate.

  12. Apparatus and method for rapid cooling of large area substrates in vacuum

    DOEpatents

    Barth, Kurt L.; Enzenroth, Robert A.; Sampath, Walajabad S.

    2010-09-28

    The present invention is directed to an apparatus and method for rapid cooling of a large substrate in a vacuum environment. A first cooled plate is brought into close proximity with one surface of a flat substrate. The spatial volume between the first cooling plate and the substrate is sealed and brought to a higher pressure than the surrounding vacuum level to increase the cooling efficiency. A second cooled plate is brought into close proximity with the opposite surface of the flat substrate. A second spatial volume between the second cooling plate and the substrate is sealed and the gas pressure is equalized to the gas pressure in the first spatial volume. The equalization of the gas pressure on both sides of the flat substrate eliminates deflection of the substrate and bending stress in the substrate.

  13. Development of a rapid method for the detection of biological threats in water

    NASA Astrophysics Data System (ADS)

    Stratis-Cullum, Dimitra N.; Wade, Kellie L.; Pellegrino, Paul M.

    2005-11-01

    In this paper, progress towards the development of real-time sensing of chemical and biological threats in liquid samples will be presented. This overall goal of this work is to combine the selective, molecular recognition of nucleic acid aptamers with a rapid signal transduction using fluorescence resonance energy transfer (FRET) for a single step identify and detect approach. Of particular interest is the application to whole-cell target recognition of biologicals, such as environmental pathogens (e.g., Campylobacter jejuni), without requiring cell lysis or other complex protocols to access biochemical species internal to the organism. An aptamer staining protocol for whole cell targets is developed and applied to the investigation of aptamers against Campylobacter jejuni cells. A comparison of aptamer binding using this method with and without the primer regions utilized in the aptamer selection process is presented and the primer regions were found to have little impact on binding performance. C. jejuni aptamers exhibited strong binding as evidenced through the fluorescence images acquired and little to no background fluorescence was observed from non-specific binding of the streptavidin-dye conjugate used in the staining method. A thrombin targeted molecular aptamer beacon was also studied and a rapid analysis was demonstrated. A 10 nM sample of thrombin was distinguishable from the fluorescence baseline of the probe alone, when using a 40 nM aptamer probe concentration. The fluorescence intensity was found to increase until saturation of the aptamer probe was achieved. These results show promise for the development of single-step identification of whole-cell targets using an aptamer bioreceptor and fluorescence resonance energy transfer transduction signaling scheme.

  14. Rapid Estimation of TPH Reduction in Oil-Contaminated Soils Using the MED Method

    SciTech Connect

    Edenborn, H.M.; Zenone, V.A.

    2007-09-01

    Oil-contaminated soil and sludge generated during federal well plugging activities in northwestern Pennsylvania are currently remediated on small landfarm sites in lieu of more expensive landfill disposal. Bioremediation success at these sites in the past has been gauged by the decrease in total petroleum hydrocarbon (TPH) concentrations to less than 10,000 mg/kg measured using EPA Method 418.1. We tested the “molarity of ethanol droplet” (MED) water repellency test as a rapid indicator of TPH concentration in soil at one landfarm near Bradford, PA. MED was estimated by determining the minimum ethanol concentration (0 – 6 M) required to penetrate air-dried and sieved soil samples within 10 sec. TPH in soil was analyzed by rapid fluorometric analysis of methanol soil extracts, which correlated well with EPA Method 1664. Uncontaminated landfarm site soil amended with increasing concentrations of waste oil sludge showed a high correlation between MED and TPH. MED values exceeded the upper limit of 6 M as TPH estimates exceed ca. 25,000 mg/kg. MED and TPH at the land farm were sampled monthly during summer months over two years in a grid pattern that allowed spatial comparisons of site remediation effectiveness. MED and TPH decreased at a constant rate over time and remained highly correlated. Inexpensive alternatives to reagent-grade ethanol gave comparable results. The simple MED approach served as an inexpensive alternative to the routine laboratory analysis of TPH during the monitoring of oily waste bioremediation at this landfarm site.

  15. Use of predictive models and rapid methods to nowcast bacteria levels at coastal beaches

    USGS Publications Warehouse

    Francy, D.S.

    2009-01-01

    The need for rapid assessments of recreational water quality to better protect public health is well accepted throughout the research and regulatory communities. Rapid analytical methods, such as quantitative polymerase chain reaction (qPCR) and immunomagnetic separation/adenosine triphosphate (ATP) analysis, are being tested but are not yet ready for widespread use. Another solution is the use of predictive models, wherein variable(s) that are easily and quickly measured are surrogates for concentrations of fecal-indicator bacteria. Rainfall-based alerts, the simplest type of model, have been used by several communities for a number of years. Deterministic models use mathematical representations of the processes that affect bacteria concentrations; this type of model is being used for beach-closure decisions at one location in the USA. Multivariable statistical models are being developed and tested in many areas of the USA; however, they are only used in three areas of the Great Lakes to aid in notifications of beach advisories or closings. These "operational" statistical models can result in more accurate assessments of recreational water quality than use of the previous day's Escherichia coli (E. coli) concentration as determined by traditional culture methods. The Ohio Nowcast, at Huntington Beach, Bay Village, Ohio, is described in this paper as an example of an operational statistical model. Because predictive modeling is a dynamic process, water-resource managers continue to collect additional data to improve the predictive ability of the nowcast and expand the nowcast to other Ohio beaches and a recreational river. Although predictive models have been shown to work well at some beaches and are becoming more widely accepted, implementation in many areas is limited by funding, lack of coordinated technical leadership, and lack of supporting epidemiological data. ?? 2009 AEHMS.

  16. Rapid method to detect duplex formation in sequencing by hybridization methods, a method for constructing containment structures for reagent interaction

    DOEpatents

    Mirzabekov, Andrei Darievich; Yershov, Gennadiy Moiseyevich; Guschin, Dmitry Yuryevich; Gemmell, Margaret Anne; Shick, Valentine V.; Proudnikov, Dmitri Y.; Timofeev, Edward N.

    2002-01-01

    A method for determining the existence of duplexes of oligonucleotide complementary molecules is provided whereby a plurality of immobilized oligonucleotide molecules, each of a specific length and each having a specific base sequence, is contacted with complementary, single stranded oligonucleotide molecules to form a duplex so as to facilitate intercalation of a fluorescent dye between the base planes of the duplex. The invention also provides for a method for constructing oligonucleotide matrices comprising confining light sensitive fluid to a surface, exposing said light-sensitive fluid to a light pattern so as to cause the fluid exposed to the light to polymerize into discrete units and adhere to the surface; and contacting each of the units with a set of different oligonucleotide molecules so as to allow the molecules to disperse into the units.

  17. A method for rapid measurement of laser ablation rate of hard dental tissue

    NASA Astrophysics Data System (ADS)

    Perhavec, T.; Gorkič, A.; Bračun, D.; Diaci, J.

    2009-06-01

    The aim of the study reported here is the development of a new method which allows rapid and accurate in-vitro measurements of three-dimensional (3D) shape of laser ablated craters in hard dental tissues and the determination of crater volume, ablation rate and speed. The method is based on the optical triangulation principle. A laser sheet projector illuminates the surface of a tooth, mounted on a linear translation stage. As the tooth is moved by the translation stage a fast digital video camera captures series of images of the illuminated surface. The images are analyzed to determine a 3D model of the surface. Custom software is employed to analyze the 3D model and to determine the volume of the ablated craters. Key characteristics of the method are discussed as well as some practical aspects pertinent to its use. The method has been employed in an in-vitro study to examine the ablation rates and speeds of the two main laser types currently employed in dentistry, Er:YAG and Er,Cr:YSGG. Ten samples of extracted human molar teeth were irradiated with laser pulse energies from 80 mJ to the maximum available energy (970 mJ with the Er:YAG, and 260 mJ with the Er,Cr:YSGG). About 2000 images of each ablated tooth surface have been acquired along a translation range of 10 mm, taking about 10 s and providing close to 1 million surface measurement points. Volumes of 170 ablated craters (half of them in dentine and the other half in enamel) were determined from this data and used to examine the ablated volume per pulse energy and ablation speed. The results show that, under the same conditions, the ablated volume per pulse energy achieved by the Er:YAG laser exceeds that of the Er,Cr:YSGG laser in almost all regimes for dentine and enamel. The maximum Er:YAG laser ablation speeds (1.2 mm 3/s in dentine and 0.7 mm 3/s in enamel) exceed those obtained by the Er,Cr:YSGG laser (0.39 mm 3/s in dentine and 0.12 mm 3/s in enamel). Since the presented method proves to be easy to

  18. Rapid methods for extracting and quantifying phenolic compounds in citrus rinds.

    PubMed

    Magwaza, Lembe Samukelo; Opara, Umezuruike Linus; Cronje, Paul J R; Landahl, Sandra; Ortiz, Jose Ordaz; Terry, Leon A

    2016-01-01

    Conventional methods for extracting and quantifying phenolic compounds in citrus rinds are time consuming. Rapid methods for extracting and quantifying phenolic compounds were developed by comparing three extraction solvent combinations (80:20 v/v ethanol:H2O; 70:29.5:0.5 v/v/v methanol:H2O:HCl; and 50:50 v/v dimethyl sulfoxide (DMSO):methanol) for effectiveness. Freeze-dried, rind powder was extracted in an ultrasonic water bath at 35°C for 10, 20, and 30 min. Phenolic compound quantification was done with a high-performance liquid chromatography (HPLC) equipped with diode array detector. Extracting with methanol:H2O:HCl for 30 min resulted in the optimum yield of targeted phenolic acids. Seven phenolic acids and three flavanone glycosides (FGs) were quantified. The dominant phenolic compound was hesperidin, with concentrations ranging from 7500 to 32,000 μg/g DW. The highest yield of FGs was observed in samples extracted, using DMSO:methanol for 10 min. Compared to other extraction methods, methanol:H2O:HCl was efficient in optimum extraction of phenolic acids. The limit of detection and quantification for all analytes were small, ranging from 1.35 to 5.02 and 4.51 to 16.72 μg/g DW, respectively, demonstrating HPLC quantification method sensitivity. The extraction and quantification methods developed in this study are faster and more efficient. Where speed and effectiveness are required, these methods are recommended. PMID:26788305

  19. Radiometric calibration of frame transfer CCD camera with uniform source system

    NASA Astrophysics Data System (ADS)

    Zhou, Jiankang; Shi, Rongbao; Chen, Yuheng; Zhou, Yuying; Shen, Weimin

    2010-08-01

    This paper presents a radiometric calibration method based on visibility function and uniform source system. The uniform system is mainly comprised of an integrating sphere and a monitoring silicon detector. The current of the silicon detector with a visibility function filter corresponds to the luminance at the exit port of integrating sphere through standard luminance meter transfer. The radiance at the camera entrance pupil is calculated for different solar zenith angles and Earth surface albedos by the MODTRAN atmospheric code. To simplify the calibration process, the radiance at its entrance pupil is integrated by visibility function. The shift smear of the frame transfer CCD is removed by the radiometric calibration and the amending ratio factor is introduced in the retrieving methods. The imaging experiment verifies the reliability of the calibration method and retrieves good quality image.

  20. Dansylation metabolite assay: a simple and rapid method for sample amount normalization in metabolomics.

    PubMed

    Wu, Yiman; Li, Liang

    2014-10-01

    Metabolomics involves the comparison of the metabolomes of individual samples from two or more groups to reveal the metabolic differences. In order to measure the metabolite concentration differences accurately, using the same amount of starting materials is essential. In this work, we describe a simple and rapid method for sample amount normalization. It is based on dansylation labeling of the amine and phenol submetabolome of an individual sample, followed by solvent extraction of the labeled metabolites and ultraviolet (UV) absorbance measurement using a microplate reader. A calibration curve of a mixture of 17 dansyl-labeled amino acid standards is used to determine the total concentration of the labeled metabolites in a sample. According to the measured concentrations of individual samples, the volume of an aliquot taken from each sample is adjusted so that the same sample amount is taken for subsequent metabolome comparison. As an example of applications, this dansylation metabolite assay method is shown to be useful in comparative metabolome analysis of two different E. coli strains using a differential chemical isotope labeling LC-MS platform. Because of the low cost of equipment and reagents and the simple procedure used in the assay, this method can be readily implemented. We envisage that, this assay, which is analogous to the bicinchoninic acid (BCA) protein assay widely used in proteomics, will be applicable to many types of samples for quantitative metabolomics. PMID:25215550

  1. A Simple Electrochemical Method for the Rapid Estimation of Antioxidant Potentials of Some Selected Medicinal Plants

    PubMed Central

    Amidi, Salimeh; Mojab, Faraz; Bayandori Moghaddam, Abdolmajid; Tabib, Kimia; Kobarfard, Farzad

    2012-01-01

    Clinical and Epidemiological studies have shown that a diet rich in fruits and vegetables is associated with a decreased risk of cardiovascular diseases, cancers and other related disorders. These beneficial health effects have been attributed in part to the presence of antioxidants in dietary plants. Therefore screening for antioxidant properties of plant extracts has been one of the interests of scientists in this field. Different screening methods have been reported for the evaluation of antioxidant properties of plant extracts in the literature. In the present research a rapid screening method has been introduced based on cyclic voltammetry for antioxidant screening of some selected medicinal plant extracts. Cyclic Voltammetry of methanolic extracts of seven medicinal plants: Buxus hyrcana, Rumex crispus, Achillea millefolium, Zataria multiflora, Ginkgo biloba, Lippia citriodora and Heptaptera anisoptera was carried out at different scan rates. Based on the interpretation of voltammograms, Rumex crispus, Achillea millefolium and Ginkgo biloba showed higher antioxidant capability than the others while Lippia citriodora contained the highest amount of antioxidants. Cyclic voltammetry is expected to be a simple method for screening antioxidants and estimating the antioxidant activity of foods and medicinal plants. PMID:25317192

  2. Rapid Method for the Determination of the Stable Oxygen Isotope Ratio of Water in Alcoholic Beverages.

    PubMed

    Wang, Daobing; Zhong, Qiding; Li, Guohui; Huang, Zhanbin

    2015-10-28

    This paper demonstrates the first successful application of an online pyrolysis technique for the direct determination of oxygen isotope ratios (δ(18)O) of water in alcoholic beverages. Similar water concentrations in each sample were achieved by adjustment with absolute ethyl alcohol, and then a fixed GC split ratio can be used. All of the organic ingredients were successfully separated from the analyte on a CP-PoraBond Q column and subsequently vented out, whereas water molecules were transferred into the reaction furnace and converted to CO. With the system presented, 15-30 μL of raw sample was diluted and can be analyzed repeatedly; the analytical precision was better than 0.4‰ (n = 5) in all cases, and more than 50 injections can be made per day. No apparent memory effect was observed even if water samples were injected using the same syringe; a strong correlation (R(2) = 0.9998) was found between the water δ(18)O of measured sample and that of working standards. There was no significant difference (p > 0.05) between the mean δ(18)O value and that obtained by the traditional method (CO2-water equilibration/isotope ratio mass spectrometry) and the newly developed method in this study. The advantages of this new method are its rapidity and straightforwardness, and less test portion is required. PMID:26373434

  3. Identification of Thermostabilizing Mutations for Membrane Proteins: Rapid Method Based on Statistical Thermodynamics.

    PubMed

    Yasuda, Satoshi; Kajiwara, Yuta; Takamuku, Yuuki; Suzuki, Nanao; Murata, Takeshi; Kinoshita, Masahiro

    2016-04-28

    Membrane proteins are responsible for the communication between cells and their environments. They are indispensable to the expression of life phenomena and also implicated in a number of diseases. Nevertheless, the studies on membrane proteins are far behind those on water-soluble proteins, primarily due to their low structural stability. Introduction of mutations can enhance their thermostability and stability in detergents, but the stabilizing mutations are currently identified by experiments. The recently reported computational methods suffer such drawbacks as the exploration of only limited mutational space and the empiricism whose results are difficult to physically interpret. Here we develop a rapid method that allows us to treat all of the possible mutations. It employs a free-energy function (FEF) that takes into account the translational entropy of hydrocarbon groups within the lipid bilayer as well as the protein intramolecular hydrogen bonding. The method is illustrated for the adenosine A2a receptor whose wild-type structure is known and utilized. We propose a reliable strategy of finding key residues to be mutated and selecting their mutations, which will lead to considerably higher stability. Representative single mutants predicted to be stabilizing or destabilizing were experimentally examined and the success rate was found to be remarkably high. The melting temperature Tm for two of them was substantially higher than that of the wild type. A double mutant with even higher Tm was also obtained. Our FEF captures the essential physics of the stability changes upon mutations. PMID:27056055

  4. A rapid and sensitive method to measure the functional activity of Shiga toxins in human serum.

    PubMed

    Arfilli, Valentina; Carnicelli, Domenica; Ardissino, Gianluigi; Torresani, Erminio; Scavia, Gaia; Brigotti, Maurizio

    2015-11-01

    Shiga toxins (Stx) have a definite role in the development of hemolytic uremic syndrome in children with hemorrhagic colitis caused by pathogenic Stx-producing Escherichia coli (STEC) strains. The dramatic effects of these toxins on the microvasculature of different organs, particularly of the kidney, are well known, whereas there is no consensus on the mechanism by which Stx reach the endothelia of target organs and/or indirectly injure these body sites. We hereby describe a quick (4 h), radioactive, Raji cell-based method designed for the detection of Stx in human sera. The assay monitors the translation impairment induced by these powerful inhibitors of protein synthesis, which are identified properly by neutralizing their activity with specific monoclonal antibodies. By this method, we detected for the first time the functional activity of Stx in sera of STEC-infected patients during hemorrhagic colitis. Recent research has pointed to a dynamic process of Stx-induced renal intoxication in which concurrent and interactive steps are involved. Our rapid and specific method could be useful for studying the kinetics of Stx during the natural course of STEC infection and the interplay between Stx activity in serum and Stx presence in different blood fractions (neutrophils, monocytes, platelets, leukocyte-platelet aggregates, microvesicles, lipoproteins). PMID:26556372

  5. A fluorescence-based method for rapid and direct determination of polybrominated diphenyl ethers in water

    SciTech Connect

    Shan, Huimei; Liu, Chongxuan; Wang, Zheming; Ma, Teng; Shang, Jianying; Pan, Duoqiang

    2015-01-01

    A new method was developed for rapid and direct measurement of polybrominated diphenyl ethers (PBDEs) in aqueous samples using fluorescence spectroscopy. The fluorescence spectra of tri- to deca-BDE (BDE 28, 47, 99, 153, 190, and 209) commonly found in environment were measured at variable emission and excitation wavelengths. The results revealed that the PBDEs have distinct fluorescence spectral profiles and peak positions that can be exploited to identify these species and determine their concentrations in aqueous solutions. The detection limits as determined in deionized water spiked with PBDEs are 1.71-5.82 ng/L for BDE 28, BDE 47, BDE 190, and BDE 209 and 45.55–69.95 ng/L for BDE 99 and BDE 153. The effects of environmental variables including pH, humic substance, and groundwater chemical composition on PBDEs measurements were also investigated. These environmental variables affected fluorescence intensity, but their effect can be corrected through linear additivity and separation of spectral signal contribution. Compared with conventional GC-based analytical methods, the fluorescence spectroscopy method is more efficient as it only uses a small amount of samples (2-4 mL), avoids lengthy complicated concentration and extraction steps, and has a low detection limit of a few ng/L.

  6. Rapid, high-temperature, field test method for evaluation of geothermal calcium carbonate scale inhibitors

    SciTech Connect

    Asperger, R.G.

    1986-09-01

    A new test method is described that allows the rapid field testing of calcium carbonate scale inhibitors at 500/sup 0/F (260/sup 0/C). The method evolved from use of a full-flow test loop on a well with a mass flow rate of about 1 x 10/sup 6/ lbm/hr (126 kg/s). It is a simple, effective way to evaluate the effectiveness of inhibitors under field conditions. Five commercial formulations were chosen for field evaluation on the basis of nonflowing, laboratory screening tests at 500/sup 0/F (260/sup 0/C). Four of these formulations from different suppliers controlled calcium carbonate scale deposition as measured by the test method. Two of these could dislodge recently deposited scale that had not age-hardened. Performance-profile diagrams, which were measured for these four effective inhibitors, show the concentration interrelationship between brine calcium and inhibitor concentrations at which the formulations will and will not stop scale formation in the test apparatus. With these diagrams, one formulation was chosen for testing on the full-flow brine line. The composition was tested for 6 weeks and showed a dramatic decrease in the scaling occurring at the flow-control valve. This scaling was about to force a shutdown of a major, long-term flow test being done for reservoir economic evaluations. The inhibitor stopped the scaling, and the test was performed without interruption.

  7. A Fluorescence-Based Method for Rapid and Direct Determination of Polybrominated Diphenyl Ethers in Water

    PubMed Central

    Shan, Huimei; Ma, Teng; Shang, Jianying; Pan, Duoqiang

    2015-01-01

    A new method was developed for rapid and direct measurement of polybrominated diphenyl ethers (PBDEs) in aqueous samples using fluorescence spectroscopy. The fluorescence spectra of tri- to deca-BDE (BDE 28, 47, 99, 153, 190, and 209) commonly found in environment were measured at variable emission and excitation wavelengths. The results revealed that the PBDEs have distinct fluorescence spectral profiles and peak positions that can be exploited to identify these species and determine their concentrations in aqueous solutions. The detection limits as determined in deionized water spiked with PBDEs are 1.71–5.82 ng/L for BDE 28, BDE 47, BDE 190, and BDE 209 and 45.55–69.95 ng/L for BDE 99 and BDE 153. The effects of environmental variables including pH, humic substance, and groundwater chemical composition on PBDEs measurements were also investigated. These environmental variables affected fluorescence intensity, but their effect can be corrected through linear additivity and separation of spectral signal contribution. Compared with conventional GC-based analytical methods, the fluorescence spectroscopy method is more efficient as it only uses a small amount of samples (2–4 mL), avoids lengthy complicated concentration and extraction steps, and has a low detection limit of a few ng/L. PMID:25705548

  8. Rapid Intrinsic Fluorescence Method for Direct Identification of Pathogens in Blood Cultures

    PubMed Central

    Walsh, John D.; Hyman, Jay M.; Borzhemskaya, Larisa; Bowen, Ann; McKellar, Caroline; Ullery, Michael; Mathias, Erin; Ronsick, Christopher; Link, John; Wilson, Mark; Clay, Bradford; Robinson, Ron; Thorpe, Thurman; van Belkum, Alex; Dunne, W. Michael

    2013-01-01

    ABSTRACT A positive blood culture is a critical result that requires prompt identification of the causative agent. This article describes a simple method to identify microorganisms from positive blood culture broth within the time taken to perform a Gram stain (<20 min). The method is based on intrinsic fluorescence spectroscopy (IFS) of whole cells and required development of a selective lysis buffer, aqueous density cushion, optical microcentrifuge tube, and reference database. A total of 1,121 monomicrobial-positive broth samples from 751 strains were analyzed to build a database representing 37 of the most commonly encountered species in bloodstream infections or present as contaminants. A multistage algorithm correctly classified 99.6% of unknown samples to the Gram level, 99.3% to the family level, and 96.5% to the species level. There were no incorrect results given at the Gram or family classification levels, while 0.8% of results were discordant at the species level. In 8/9 incorrect species results, the misidentified isolate was assigned to a species of the same genus. This unique combination of selective lysis, density centrifugation, and IFS can rapidly identify the most common microbial species present in positive blood cultures. Faster identification of the etiologic agent may benefit the clinical management of sepsis. Further evaluation is now warranted to determine the performance of the method using clinical blood culture specimens. PMID:24255123

  9. Preparation and characterization of guluronic acid oligosaccharides degraded by a rapid microwave irradiation method.

    PubMed

    Hu, Ting; Li, Chunxia; Zhao, Xia; Li, Guangsheng; Yu, Guangli; Guan, Huashi

    2013-05-24

    Guluronic acid oligosaccharides (GOS) with degree of polymerization (DP) ranging from 1 to 10 were prepared by a rapid microwave degradation method. Polyguluronic acid, fractionated from alginate hydrolysate, was dissolved in dilute ammonia water at a concentration of 20 mg/mL (pH 5) and then hydrolyzed under microwave irradiation (1600 W) at 130°C for 15 min to produce GOS mixture. The GOS mixture was separated by a Bio-Gel P6 column and ten fractions were obtained. Each GOS fraction was further characterized by electrospray ionization mass spectrometry, (1)H NMR, (13)C NMR, and 2D NMR spectroscopy techniques. The data showed that the GOS fractions were saturated oligoguluronates with general molecular formula C(6n)H(8n+2)O(6n+1) (n=1-10). This microwave degradation method was not only convenient, less time consuming, and environment-friendly, but also produced GOS with high yield (71%) and eliminating a desalting procedure compared to conventional acid hydrolysis method. PMID:23584235

  10. Synthesis of Giant Unilamellar Vesicles (GUV) from Liposomes Prepared by the Rapid Solvent Exchange (RSE) Method

    NASA Astrophysics Data System (ADS)

    Baykal-Caglar, Eda

    2010-10-01

    Lipid bilayers, which is an important constituent of cell membranes, has been extensively studied by biophysicists. Cell membranes perform many vital cell functions such as signal transduction and transportation of materials needed for the functioning of the cell organelles. Understanding the organization and dynamics of lipid bilayers is important for understanding the processes taking place in cell membranes. Giant Unilamellar Vesicles (GUVs) are cell-sized model systems that allow direct visualization of membrane-related phenomena using fluorescence microscopy. In this study, we investigated the synthesis of GUVs from much smaller liposomes (less than 0.5 microns) produced by the Rapid Solvent Exchange (RSE) method in aqueous solutions of high and low ionic strength. The GUVs synthesized using RSE liposomes are more uniform in lipid composition than that synthesized by other methods. We made a number of modifications to the original electroformation method, and we are able to prepare GUVs from RSE liposomes both in high ionic strength and low ionic strength buffers. Using our optimized procedure, we are also able to produce high quality multi-component GUVs to study the dynamics of lipid domains.

  11. A rapid and efficient electroporation method for transformation of Halomonas sp. O-1.

    PubMed

    Harris, Joshua R; Lundgren, Benjamin R; Grzeskowiak, Brian R; Mizuno, Kouhei; Nomura, Christopher T

    2016-10-01

    Halomonas sp. O-1 is a halophilic bacterium with a high potential for industrial application due to its natural ability to produce polyhydroxyalkanoates (PHAs) using seawater-based media. However, a major barrier preventing industrial scale implementation of this organism is a lack of molecular methodologies capable of readily transforming members of the Halomonas genus. Currently, the only reliable method used for introducing DNA into Halomonas spp. is bacterial conjugation, a somewhat tedious and time-consuming technique compared to electroporation-based methodologies. Here we describe a rapid and reproducible method for the electroporation of Halomonas sp. O-1 with plasmid DNA. Electrocompetent cells were generated by growing Halomonas sp. O-1 in a yeast extract-tryptone medium with a final salinity of 3.5%, pH of 7.5, followed by several washes using 300mM sucrose. Results show that plasmids containing chloramphenicol (Cm(R)) and gentamicin (Gm(R)) resistance cassettes are suitable antibiotic selection markers for transformation and yields of 10(4) transformants per μg of DNA were obtained. This method is simple to perform and the materials used are readily available in most research labs. Additionally, this plasmid-based transformation procedure has the potential to be adapted for a number of applications including the creation of recombinant stains and the generation of deletion mutants of Halomonas spp. PMID:27542998

  12. Rapid maxillary expansion effects: An alternative assessment method by means of cone-beam tomography

    PubMed Central

    Melgaço, Camilo Aquino; Columbano, José; Jurach, Estela Maris; Nojima, Matilde da Cunha Gonçalves; Sant'Anna, Eduardo Franzotti; Nojima, Lincoln Issamu

    2014-01-01

    INTRODUCTION: This study aims to develop a method to assess the changes in palatal and lingual cross-sectional areas in patients submitted to rapid maxillary expansion (RME). METHODS: The sample comprised 31 Class I malocclusion individuals submitted to RME and divided into two groups treated with Haas (17 patients) and Hyrax (14 patients) expanders. Cone-beam computed tomography scans were acquired at T0 (before expansion ) and T1 (six months after screw stabilization). Maxillary and mandibular cross-sectional areas were assessed at first permanent molars and first premolars regions and compared at T0 and T1. Mandibular occlusal area was also analyzed. RESULTS: Maxillary cross-sectional areas increased in 56.18 mm2 and 44.32 mm2 for the posterior and anterior regions. These values were smaller for the mandible, representing augmentation of 40.32 mm2 and 39.91 mm2 for posterior and anterior sections. No differences were found when comparing both expanders. Mandibular occlusal area increased 43.99mm2 and mandibular incisors proclined. Increments of 1.74 mm and 1.7 mm occurred in mandibular intermolar and interpremolar distances. These same distances presented increments of 5.5 mm and 5.57 mm for the maxillary arch. CONCLUSION: Occlusal and cross-sectional areas increased significantly after RME. The method described seems to be reliable and precise to assess intraoral area changes. PMID:25715721

  13. A Rapid, Cost-Effective Method of Assembly and Purification of Synthetic DNA Probes >100 bp

    PubMed Central

    Jensen, Michael A.; Jauregui, Lauren; Davis, Ronald W.

    2012-01-01

    Here we introduce a rapid, cost-effective method of generating molecular DNA probes in just under 15 minutes without the need for expensive, time-consuming gel-extraction steps. As an example, we enzymatically concatenated six variable strands (50 bp) with a common strand sequence (51 bp) in a single pool using Fast-Link DNA ligase to produce 101 bp targets (10 min). Unincorporated species were then filtered out by passing the crude reaction through a size-exclusion column (<5 min). We then compared full-length product yield of crude and purified samples using HPLC analysis; the results of which clearly show our method yields three-quarters that of the crude sample (50% higher than by gel-extraction). And while we substantially reduced the amount of unligated product with our filtration process, higher purity and yield, with an increase in number of stands per reaction (>12) could be achieved with further optimization. Moreover, for large-scale assays, we envision this method to be fully automated with the use of robotics such as the Biomek FX; here, potentially thousands of samples could be pooled, ligated and purified in either a 96, 384 or 1536-well platform in just minutes. PMID:22493688

  14. FLASH: a rapid method for prototyping paper-based microfluidic devices.

    PubMed

    Martinez, Andres W; Phillips, Scott T; Wiley, Benjamin J; Gupta, Malancha; Whitesides, George M

    2008-12-01

    This article describes FLASH (Fast Lithographic Activation of Sheets), a rapid method for laboratory prototyping of microfluidic devices in paper. Paper-based microfluidic devices are emerging as a new technology for applications in diagnostics for the developing world, where low cost and simplicity are essential. FLASH is based on photolithography, but requires only a UV lamp and a hotplate; no clean-room or special facilities are required (FLASH patterning can even be performed in sunlight if a UV lamp and hotplate are unavailable). The method provides channels in paper with dimensions as small as 200 microm in width and 70 microm in height; the height is defined by the thickness of the paper. Photomasks for patterning paper-based microfluidic devices can be printed using an ink-jet printer or photocopier, or drawn by hand using a waterproof black pen. FLASH provides a straightforward method for prototyping paper-based microfluidic devices in regions where the technological support for conventional photolithography is not available. PMID:19023478

  15. Development of a rapid HRM genotyping method for detection of dog-derived Giardia lamblia.

    PubMed

    Tan, Liping; Yu, Xingang; Abdullahi, Auwalu Yusuf; Wu, Sheng; Zheng, Guochao; Hu, Wei; Song, Meiran; Wang, Zhen; Jiang, Biao; Li, Guoqing

    2015-11-01

    Giardia lamblia is a zoonotic flagellate protozoan in the intestine of human and many mammals including dogs. To assess a threat of dog-derived G. lamblia to humans, the common dog-derived G. lamblia assemblages A, C, and D were genotyped by high-resolution melting (HRM) technology. According to β-giardin gene sequence, the qPCR-HRM primers BG5 and BG7 were designed. A series of experiments on the stability, sensitivity, and accuracy of the HRM method were also tested. Results showed that the primers BG5 and BG7 could distinguish among three assemblages A, C, and D, which Tm value differences were about 1 °C to each other. The melting curves of intra-assay reproducibility were almost coincided, and those of inter-assay reproducibility were much the same shape. The lowest detection concentration was about 5 × 10(-6)-ng/μL sample. The genotyping results from 21 G. lamblia samples by the HRM method were in complete accordance with sequencing results. It is concluded that the HRM genotyping method is rapid, stable, specific, highly sensitive, and suitable for clinical detection and molecular epidemiological survey of dog-derived G. lamblia. PMID:26212101

  16. FLASH: A rapid method for prototyping paper-based microfluidic devices‡

    PubMed Central

    Martinez, Andres W.; Phillips, Scott T.; Wiley, Benjamin J.; Gupta, Malancha

    2011-01-01

    This article describes FLASH (Fast Lithographic Activation of Sheets), a rapid method for laboratory prototyping of microfluidic devices in paper. Paper-based microfluidic devices are emerging as a new technology for applications in diagnostics for the developing world, where low cost and simplicity are essential. FLASH is based on photolithography, but requires only a UV lamp and a hotplate; no clean-room or special facilities are required (FLASH patterning can even be performed in sunlight if a UV lamp and hotplate are unavailable). The method provides channels in paper with dimensions as small as 200 μm in width and 70 μm in height; the height is defined by the thickness of the paper. Photomasks for patterning paper-based microfluidic devices can be printed using an ink-jet printer or photocopier, or drawn by hand using a waterproof black pen. FLASH provides a straightforward method for prototyping paper-based microfluidic devices in regions where the technological support for conventional photolithography is not available. PMID:19023478

  17. A Rapid Method for Optimizing Running Temperature of Electrophoresis through Repetitive On-Chip CE Operations

    PubMed Central

    Kaneda, Shohei; Ono, Koichi; Fukuba, Tatsuhiro; Nojima, Takahiko; Yamamoto, Takatoki; Fujii, Teruo

    2011-01-01

    In this paper, a rapid and simple method to determine the optimal temperature conditions for denaturant electrophoresis using a temperature-controlled on-chip capillary electrophoresis (CE) device is presented. Since on-chip CE operations including sample loading, injection and separation are carried out just by switching the electric field, we can repeat consecutive run-to-run CE operations on a single on-chip CE device by programming the voltage sequences. By utilizing the high-speed separation and the repeatability of the on-chip CE, a series of electrophoretic operations with different running temperatures can be implemented. Using separations of reaction products of single-stranded DNA (ssDNA) with a peptide nucleic acid (PNA) oligomer, the effectiveness of the presented method to determine the optimal temperature conditions required to discriminate a single-base substitution (SBS) between two different ssDNAs is demonstrated. It is shown that a single run for one temperature condition can be executed within 4 min, and the optimal temperature to discriminate the SBS could be successfully found using the present method. PMID:21845077

  18. A rapid and gentle method for isolation of genomic DNA from pathogenic Nocardia spp.

    PubMed Central

    Torres, R D; Oletta, C A; Zlotnik, H

    1996-01-01

    The lack of simple and efficient methods for extraction of DNA from Nocardia spp. has hampered molecular manipulation of the DNA for diagnostic purposes. In the present study, a method for the rapid extraction of undegraded genomic nocardial DNA was established. Briefly, 14 pathogenic Nocardia strains were grown at 37 degrees C for 3 to 5 days in Sauton broth containing 0.05% Tween 80. Subsequently, the cultures were treated for 48 h with 1.2 mg of cycloserine per ml (final concentration). Cells were then harvested by centrifugation and treated with a lysis solution containing 3 mg of lysozyme per ml. This was followed by the addition of proteinase K and sodium dodecyl sulfate to final concentrations of 0.2 mg/ml and 0.5%, respectively, and incubation for 1 h at 50 degrees C. DNA was precipitated with isopropanol after phenol-chloroform-isoamyl alcohol extractions and RNase treated before being quantitated and analyzed by agarose gel electrophoresis. The average undegraded DNA yields obtained were 101 micrograms for Nocardia brasiliensis and 121 micrograms for N. asteroides. This DNA was suitable for restriction endonuclease digestion and PCR amplification, which are methods being applied to the characterization and diagnosis of slowly growing organisms such as Nocardia spp. PMID:8877144

  19. A fluorescence-based method for rapid and direct determination of polybrominated diphenyl ethers in water

    DOE PAGESBeta

    Shan, Huimei; Liu, Chongxuan; Wang, Zheming; Ma, Teng; Shang, Jianying; Pan, Duoqiang

    2015-01-01

    A new method was developed for rapid and direct measurement of polybrominated diphenyl ethers (PBDEs) in aqueous samples using fluorescence spectroscopy. The fluorescence spectra of tri- to deca-BDE (BDE 28, 47, 99, 153, 190, and 209) commonly found in environment were measured at variable emission and excitation wavelengths. The results revealed that the PBDEs have distinct fluorescence spectral profiles and peak positions that can be exploited to identify these species and determine their concentrations in aqueous solutions. The detection limits as determined in deionized water spiked with PBDEs are 1.71-5.82 ng/L for BDE 28, BDE 47, BDE 190, and BDEmore » 209 and 45.55–69.95 ng/L for BDE 99 and BDE 153. The effects of environmental variables including pH, humic substance, and groundwater chemical composition on PBDEs measurements were also investigated. These environmental variables affected fluorescence intensity, but their effect can be corrected through linear additivity and separation of spectral signal contribution. Compared with conventional GC-based analytical methods, the fluorescence spectroscopy method is more efficient as it only uses a small amount of samples (2-4 mL), avoids lengthy complicated concentration and extraction steps, and has a low detection limit of a few ng/L.« less

  20. Laboratory Measurement of Bidirectional Reflectance of Radiometric Tarps

    NASA Technical Reports Server (NTRS)

    Knowlton, Kelly

    2006-01-01

    Objectives: a) To determine the magnitude of radiometric tarp BRDF; b) To determine whether an ASD FieldSpec Pro spectroradiometer can be used to perform the experiment. Radiometric tarps with nominal reflectance values of 52%, 35%, and 3.5%, deployed for IKONOS. QuickBird, and OrbView-3 overpasses Ground-based spectroradiometric measurements of tarp and Spectralon@ panel taken during overpass using ASD FieldSpec Pro spectroradiometer, and tarp reflectance calculated. Reflectance data used in atmospheric radiative transfer model (MODTRAN) to predict satellite at-sensor radiance for radiometric calibration. Reflectance data also used to validate atmospheric correction of high-spatial-resolution multispectral image products

  1. Intraband radiometric performance of the Landsat Thematic Mappers.

    USGS Publications Warehouse

    Kieffer, H.H.; Cook, D.A.; Eliason, E.M.; Eliason, P.T.

    1985-01-01

    Radiometric characteristics have been examined of the Landsat-4 and Landsat-5 Thematic Mappers (TMs) that can be established without absolute calibration of spectral data. This analysis is based on radiometrically and geometrically raw (B-type) data of both uniform (flat-field) and high-contrast scenes. Subscenes selected for uniform radiance were used to characterized subtle radiometric differences and noise problems. Although the general performance of the Thematic Mappers is excellent, various anomalies that have a magnitude of a few digital levels (DN) or less are quantified. -from Authors

  2. Radiometric cloud imaging with an uncooled microbolometer thermal infrared camera.

    PubMed

    Shaw, Joseph; Nugent, Paul; Pust, Nathan; Thurairajah, Brentha; Mizutani, Kohei

    2005-07-25

    An uncooled microbolometer-array thermal infrared camera has been incorporated into a remote sensing system for radiometric sky imaging. The radiometric calibration is validated and improved through direct comparison with spectrally integrated data from the Atmospheric Emitted Radiance Interferometer (AERI). With the improved calibration, the Infrared Cloud Imager (ICI) system routinely obtains sky images with radiometric uncertainty less than 0.5 W/(m(2 )sr) for extended deployments in challenging field environments. We demonstrate the infrared cloud imaging technique with still and time-lapse imagery of clear and cloudy skies, including stratus, cirrus, and wave clouds. PMID:19498585

  3. Relative Radiometric Normalization and Atmospheric Correction of a SPOT 5 Time Series

    PubMed Central

    Hajj, Mahmoud El; Bégué, Agnès; Lafrance, Bruno; Hagolle, Olivier; Dedieu, Gérard; Rumeau, Matthieu

    2008-01-01

    Multi-temporal images acquired at high spatial and temporal resolution are an important tool for detecting change and analyzing trends, especially in agricultural applications. However, to insure a reliable use of this kind of data, a rigorous radiometric normalization step is required. Normalization can be addressed by performing an atmospheric correction of each image in the time series. The main problem is the difficulty of obtaining an atmospheric characterization at a given acquisition date. In this paper, we investigate whether relative radiometric normalization can substitute for atmospheric correction. We develop an automatic method for relative radiometric normalization based on calculating linear regressions between unnormalized and reference images. Regressions are obtained using the reflectances of automatically selected invariant targets. We compare this method with an atmospheric correction method that uses the 6S model. The performances of both methods are compared using 18 images from of a SPOT 5 time series acquired over Reunion Island. Results obtained for a set of manually selected invariant targets show excellent agreement between the two methods in all spectral bands: values of the coefficient of determination (r2 exceed 0.960, and bias magnitude values are less than 2.65. There is also a strong correlation between normalized NDVI values of sugarcane fields (r2 = 0.959). Despite a relative error of 12.66% between values, very comparable NDVI patterns are observed.

  4. Development of Novel Method for Rapid Extract of Radionuclides from Solution Using Polymer Ligand Film

    NASA Astrophysics Data System (ADS)

    Rim, Jung H.

    Accurate and fast determination of the activity of radionuclides in a sample is critical for nuclear forensics and emergency response. Radioanalytical techniques are well established for radionuclides measurement, however, they are slow and labor intensive, requiring extensive radiochemical separations and purification prior to analysis. With these limitations of current methods, there is great interest for a new technique to rapidly process samples. This dissertation describes a new analyte extraction medium called Polymer Ligand Film (PLF) developed to rapidly extract radionuclides. Polymer Ligand Film is a polymer medium with ligands incorporated in its matrix that selectively and rapidly extract analytes from a solution. The main focus of the new technique is to shorten and simplify the procedure necessary to chemically isolate radionuclides for determination by alpha spectrometry or beta counting. Five different ligands were tested for plutonium extraction: bis(2-ethylhexyl) methanediphosphonic acid (H2DEH[MDP]), di(2-ethyl hexyl) phosphoric acid (HDEHP), trialkyl methylammonium chloride (Aliquat-336), 4,4'(5')-di-t-butylcyclohexano 18-crown-6 (DtBuCH18C6), and 2-ethylhexyl 2-ethylhexylphosphonic acid (HEH[EHP]). The ligands that were effective for plutonium extraction further studied for uranium extraction. The plutonium recovery by PLFs has shown dependency on nitric acid concentration and ligand to total mass ratio. H2DEH[MDP] PLFs performed best with 1:10 and 1:20 ratio PLFs. 50.44% and 47.61% of plutonium were extracted on the surface of PLFs with 1M nitric acid for 1:10 and 1:20 PLF, respectively. HDEHP PLF provided the best combination of alpha spectroscopy resolution and plutonium recovery with 1:5 PLF when used with 0.1M nitric acid. The overall analyte recovery was lower than electrodeposited samples, which typically has recovery above 80%. However, PLF is designed to be a rapid field deployable screening technique and consistency is more important

  5. A Novel and Simple Method for Rapid Generation of Recombinant Porcine Adenoviral Vectors for Transgene Expression

    PubMed Central

    Ma, Jing; Wang, Wenbin; Zhang, Lu; Tikoo, Suresh K.; Yang, Zengqi

    2015-01-01

    Many human (different serotypes) and nonhuman adenovirus vectors are being used for gene delivery. However, the current system for isolating recombinant adenoviral vectors is either time-consuming or expensive, especially for the generation of recombinant non-human adenoviral vectors. We herein report a new and simple cloning approach for the rapid generation of a porcine adenovirus (PAdV-3) vector which shows promise for gene transfer to human cells and evasion of human adenovirus type 5 (HAdV-5) immunity. Based on the final cloning plasmid, pFPAV3-CcdB-Cm, and our modified SLiCE strategy (SLiCE cloning and lethal CcdB screening), the process for generating recombinant PAdV-3 plasmids required only one step in 3 days, with a cloning efficiency as high as 620±49.56 clones/ng and zero background (100% accuracy). The recombinant PAdV-3 plasmids could be successfully rescued in porcine retinal pigment epithelium cells (VR1BL), which constitutively express the HAdV-5 E1 and PAdV-3 E1B 55k genes, and the foreign genes were highly expressed at 24 h after transduction into swine testicle (ST) cells. In conclusion, this strategy for generating recombinant PAdV-3 vectors based on our modified SLiCE cloning system was rapid and cost-efficient, which could be used as universal cloning method for modification the other regions of PAdV-3 genome as well as other adenoviral genomes. PMID:26011074

  6. A Rapid and Specific Method for the Detection of Indole in Complex Biological Samples

    PubMed Central

    Chappell, Cynthia; Gonzales, Christopher; Okhuysen, Pablo

    2015-01-01

    Indole, a bacterial product of tryptophan degradation, has a variety of important applications in the pharmaceutical industry and is a biomarker in biological and clinical specimens. Yet, specific assays to quantitate indole are complex and require expensive equipment and a high level of training. Thus, indole in biological samples is often estimated using the simple and rapid Kovács assay, which nonspecifically detects a variety of commonly occurring indole analogs. We demonstrate here a sensitive, specific, and rapid method for measuring indole in complex biological samples using a specific reaction between unsubstituted indole and hydroxylamine. We compared the hydroxylamine-based indole assay (HIA) to the Kovács assay and confirmed that the two assays are capable of detecting microgram amounts of indole. However, the HIA is specific to indole and does not detect other naturally occurring indole analogs. We further demonstrated the utility of the HIA in measuring indole levels in clinically relevant biological materials, such as fecal samples and bacterial cultures. Mean and median fecal indole concentrations from 53 healthy adults were 2.59 mM and 2.73 mM, respectively, but varied widely (0.30 mM to 6.64 mM) among individuals. We also determined that enterotoxigenic Escherichia coli strain H10407 produces 3.3 ± 0.22 mM indole during a 24-h period in the presence of 5 mM tryptophan. The sensitive and specific HIA should be of value in a variety of settings, such as the evaluation of various clinical samples and the study of indole-producing bacterial species in the gut microbiota. PMID:26386049

  7. Development of a rapid cyprinid herpesvirus 2 detection method by loop-mediated isothermal amplification.

    PubMed

    Liang, L-G; Xie, J; Luo, D

    2014-10-01

    Cyprinid herpesvirus 2 (CyHV2) is a pathogen that causes severe disease and high mortality in goldfish and Prussian carp. We developed a six primer loop-mediated isothermal amplification (LAMP) assay targeting the intercapsomeric triplex protein gene. CyHV-2 DNA was 10-fold serially diluted (10(8)-10(0) copies μl(-1)) and was used as the template to determine primer sensitivity. LAMP assays were performed with DNA templates from other pathogens to determine specificity. The LAMP assay had an unequivocal detection limit of 10 copies μl(-1), which was 100 times lower than that of the polymerase chain reaction. Other pathogen strains were not amplified by the LAMP primers, indicating good specificity. SYBR Green I was added to visually detect the amplification products. Assay applicability was evaluated in 120 samples of Carassius auratus gibelio, and a positive rate of 92·5% was obtained. In conclusion, a conventional LAMP assay has high convenience, rapidity, sensitivity and specificity for detecting CyHV-2 in infected aquatic organisms. Significance and impact of the study: Herpesviral haematopoietic necrosis, caused by cyprinid herpesvirus 2 (CyHV-2), is a severe disease of goldfish and Prussian carp associated with high mortality. We developed a loop-mediated isothermal amplification (LAMP) assay to detect CyHV-2 at relatively low plasmid DNA copy levels. The results show that the LAMP assay has a number of advantages (simple, sensitive, rapid and specific) over the conventional polymerase chain reaction and can be applied in the laboratory and field. Particularly, the method is highly applicable to facilitate surveillance and early diagnosis of CyHV-2. PMID:24935791

  8. A rapid method for determining salinomycin and monensin sensitivity in Eimeria tenella.

    PubMed

    Jenkins, M C; O'Brien, C N; Fuller, L; Mathis, G F; Fetterer, R

    2014-12-15

    Standard methods of determining the ionophore sensitivity of Eimeria rely on infecting chickens with an isolate or a mixture of Eimeria spp. oocysts in the presence of different anti-coccidial drugs. The purpose of this study was to develop a rapid in vitro method for assessing salinomycin and monensin sensitivity in Eimeria tenella. Cultures of MDBK cells were grown to 85% confluency, and then inoculated with excysted E. tenella laboratory strain (APU-1) sporozoites in the presence of different concentrations of salinomycin or monensin. At various timepoints, the monolayers were fixed for counting intraceullar sporozoites, or were subjected to DNA extraction, followed by molecular analysis using quantitative (qPCR) or semi-quantitative PCR (sqPCR). Preliminary experiments showed that 24h was the optimum time for harvesting the E. tenella-infected cell cultures. The average number of E. tenella sporozoites relative to untreated controls displayed a linear decrease between 0.3 and 33.0 μg/ml salinomycin and between 0.3 and 3.3 μg/ml monensin. A similar pattern was observed in the relative amount of E. tenella DNA as measured by sqPCR. A linear decrease in the relative amount of E. tenella DNA was observed over the entire range of salinomycin and monensin concentrations as measured by qPCR possibly reflecting the greater sensitivity of this assay. Comparison of sporozoite counting, sqPCR, and qPCR signals using a criterion of 50% inhibition in sporozoite numbers or level of PCR amplification product showed good agreement between the three assays. E. tenella field isolates (FS-1 and FS-2) displaying resistance to salinomycin and monensin were evaluated in the in vitro assay using qPCR and sqPCR. Compared to E. tenella APU-1, the E. tenella FS-1 and FS-2 isolates showed higher levels of E. tenella DNA at 24h by both qPCR and sqPCR. This in vitro assay represents a significant advance in developing rapid, cost-effective methods for assessing ionophore sensitivity in E

  9. PHASS99: A software program for retrieving and decoding the radiometric ages of igneous rocks from the international database IGBADAT

    NASA Astrophysics Data System (ADS)

    Al-Mishwat, Ali T.

    2016-05-01

    PHASS99 is a FORTRAN program designed to retrieve and decode radiometric and other physical age information of igneous rocks contained in the international database IGBADAT (Igneous Base Data File). In the database, ages are stored in a proprietary format using mnemonic representations. The program can handle up to 99 ages in an igneous rock specimen and caters to forty radiometric age systems. The radiometric age alphanumeric strings assigned to each specimen description in the database consist of four components: the numeric age and its exponential modifier, a four-character mnemonic method identification, a two-character mnemonic name of analysed material, and the reference number in the rock group bibliography vector. For each specimen, the program searches for radiometric age strings, extracts them, parses them, decodes the different age components, and converts them to high-level English equivalents. IGBADAT and similarly-structured files are used for input. The output includes three files: a flat raw ASCII text file containing retrieved radiometric age information, a generic spreadsheet-compatible file for data import to spreadsheets, and an error file. PHASS99 builds on the old program TSTPHA (Test Physical Age) decoder program and expands greatly its capabilities. PHASS99 is simple, user friendly, fast, efficient, and does not require users to have knowledge of programing.

  10. New multiplex PCR methods for rapid screening of genetically modified organisms in foods.

    PubMed

    Datukishvili, Nelly; Kutateladze, Tamara; Gabriadze, Inga; Bitskinashvili, Kakha; Vishnepolsky, Boris

    2015-01-01

    We present novel multiplex PCR methods for rapid and reliable screening of genetically modified organisms (GMOs). New designed PCR primers targeting four frequently used GMO specific sequences permitted identification of new DNA markers, in particular 141 bp fragment of cauliflower mosaic virus (CaMV) 35S promoter, 224 bp fragment of Agrobacterium tumefaciens nopaline synthase (NOS) terminator, 256 bp fragment of 5-enolppyruvylshikimate-phosphate synthase (epsps) gene and 258 bp fragment of Cry1Ab delta-endotoxin (cry1Ab) gene for GMO screening. The certified reference materials containing Roundup Ready soybean (RRS) and maize MON 810 were applied for the development and optimization of uniplex and multiplex PCR systems. Evaluation of amplification products by agarose gel electrophoresis using negative and positive controls confirmed high specificity and sensitivity at 0.1% GMO for both RRS and MON 810. The fourplex PCR was developed and optimized that allows simultaneous detection of three common transgenic elements, such as: CaMV 35S promoter, NOS terminator, epsps gene together with soybean-specific lectin gene. The triplex PCR developed enables simultaneous identification of transgenic elements, such as: 35S promoter and cry1Ab gene together with maize zein gene. The analysis of different processed foods demonstrated that multiplex PCR methods developed in this study are useful for accurate and fast screening of GM food products. PMID:26257724

  11. TranScreen-N: Method for rapid screening of trans-ungual drug delivery enhancers.

    PubMed

    Murthy, S Narasimha; Vaka, Siva Ram Kiran; Sammeta, Srinivasa Murthy; Nair, Anroop B

    2009-11-01

    Topical monotherapy of nail diseases such as onychomycosis and nail psoriasis has been less successful due to poor permeability of the human nail plate to topically administered drugs. Chemical enhancers are utilized to improve the drug delivery across the nail plate. Choosing the most effective chemical enhancers for the given drug and formulation is highly critical in determining the efficacy of topical therapy of nail diseases. Screening the large pool of enhancers using currently followed diffusion cell experiments would be tedious and expensive. The main objective of this study is to develop TranScreen-N, a high throughput method of screening trans-ungual drug permeation enhancers. It is a rapid microwell plate based method which involves two different treatment procedures; the simultaneous exposure treatment and the sequential exposure treatment. In the present study, several chemicals were evaluated by TranScreen-N and by diffusion studies in the Franz diffusion cell (FDC). Good agreement of in vitro drug delivery data with TranScreen-N data provided validity to the screening technique. In TranScreen-N technique, the enhancers can be grouped according to whether they need to be applied before or simultaneously with drugs (or by either procedures) to enhance the drug delivery across the nail plate. TranScreen-N technique can significantly reduce the cost and duration required to screen trans-ungual drug delivery enhancers. PMID:19363796

  12. A rapid method to authenticate vegetable oils through surface-enhanced Raman scattering

    PubMed Central

    Lv, Ming Yang; Zhang, Xin; Ren, Hai Rui; Liu, Luo; Zhao, Yong Mei; Wang, Zheng; Wu, Zheng Long; Liu, Li Min; Xu, Hai Jun

    2016-01-01

    Vegetable oils are essential in our daily diet. Among various vegetable oils, the major difference lies in the composition of fatty acids, including unsaturated fatty acids (USFA) and saturated fatty acids (SFA). USFA include oleic acid (OA), linoleic acid (LA), and α-linolenic acid (ALA), while SFA are mainly palmitic acid (PA). In this study, the most typical and abundant USFA present with PA in vegetable oils were quantified. More importantly, certain proportional relationships between the integrated intensities of peaks centered at 1656 cm−1 (S1656) in the surface-enhanced Raman scattering spectra of different USFA were confirmed. Therefore, the LA or ALA content could be converted into an equivalent virtual OA content enabling the characterization of the USFA content in vegetable oils using the equivalent total OA content. In combination with the S1656 of pure OA and using peanut, sesame, and soybean oils as examples, the ranges of S1656 corresponding to the National Standards of China were established to allow the rapid authentication of vegetable oils. Gas chromatograph-mass spectrometer analyses verified the accuracy of the method, with relative errors of less than 5%. Moreover, this method can be extended to other detection fields, such as diseases. PMID:26987802

  13. Penile xenon (/sup 133/Xe) washout: a rapid method of screening for vasculogenic impotence

    SciTech Connect

    Nseyo, U.O.; Wilbur, H.J.; Kang, S.A.; Flesh, L.; Bennett, A.H.

    1984-01-01

    The radioactive inert gas xenon (/sup 133/Xe) is a well-established isotopic indicator used to assess vascular status in many organ systems. Xenon-133 was used to evaluate male impotence. Xenon-133 was injected subcutaneously at the level of the coronal sulcus in the detumescent state. Using the gamma camera, sequential images were obtained and computer-generated curves calculated. The clearance time for 50 per cent washout of the injected /sup 133/Xe (T1/2) was then calculated for each patient, as well as a control group. Preliminary findings indicate a correlation with such established techniques of evaluating erectile impotence as history, physical examination, penile pulse Doppler tracings, and brachial-penile blood pressure index. The xenon-133 washout study was a rapid, minimally invasive, reproducible, and cost-effective method of screening those impotent patients for vasculogenic etiology of their erectile impotence. We recommend the addition of this method to the surgeon engaged in the care of impotent males.

  14. Rapid Filtration Separation-Based Sample Preparation Method for Bacillus Spores in Powdery and Environmental Matrices

    PubMed Central

    Isabel, Sandra; Boissinot, Maurice; Charlebois, Isabelle; Fauvel, Chantal M.; Shi, Lu-E; Lévesque, Julie-Christine; Paquin, Amélie T.; Bastien, Martine; Stewart, Gale; Leblanc, Éric; Sato, Sachiko

    2012-01-01

    Authorities frequently need to analyze suspicious powders and other samples for biothreat agents in order to assess environmental safety. Numerous nucleic acid detection technologies have been developed to detect and identify biowarfare agents in a timely fashion. The extraction of microbial nucleic acids from a wide variety of powdery and environmental samples to obtain a quality level adequate for these technologies still remains a technical challenge. We aimed to develop a rapid and versatile method of separating bacteria from these samples and then extracting their microbial DNA. Bacillus atrophaeus subsp. globigii was used as a simulant of Bacillus anthracis. We studied the effects of a broad variety of powdery and environmental samples on PCR detection and the steps required to alleviate their interference. With a benchmark DNA extraction procedure, 17 of the 23 samples investigated interfered with bacterial lysis and/or PCR-based detection. Therefore, we developed the dual-filter method for applied recovery of microbial particles from environmental and powdery samples (DARE). The DARE procedure allows the separation of bacteria from contaminating matrices that interfere with PCR detection. This procedure required only 2 min, while the DNA extraction process lasted 7 min, for a total of <10 min. This sample preparation procedure allowed the recovery of cleaned bacterial spores and relieved detection interference caused by a wide variety of samples. Our procedure was easily completed in a laboratory facility and is amenable to field application and automation. PMID:22210204

  15. Rapid processing method for solution deposited YBa 2Cu 3O 7- δ thin films

    NASA Astrophysics Data System (ADS)

    Dawley, J. T.; Clem, P. G.; Boyle, T. J.; Ottley, L. M.; Overmyer, D. L.; Siegal, M. P.

    2004-02-01

    YBa 2Cu 3O 7- δ (YBCO) films, deposited on buffered metal substrates, are the primary candidate for second-generation superconducting (SC) wires, with applications including expanded power grid transmission capability, compact motors, and enhanced sensitivity magnetic resonance imaging. Feasibility of manufacturing such superconducting wires is dependent on high processing speed, often a limitation of vapor and solution-based YBCO deposition processes. In this work, YBCO films were fabricated via a new diethanolamine-modified trifluoroacetic film solution deposition method. Modifying the copper chemistry of the YBCO precursor solution with diethanolamine enables a hundredfold decrease in the organic pyrolysis time required for MA/cm 2 current density ( Jc) YBCO films, from multiple hours to ∼20 s in atmospheric pressure air. High quality, ∼0.2 μm thick YBCO films with Jc (77 K) values ⩾2 MA/cm 2 at 77 K are routinely crystallized from these rapidly pyrolyzed films deposited on LaAlO 3. This process has also enabled Jc (77 K)=1.1 MA/cm 2 YBCO films via 90 m/h dip-coating on Oak Ridge National Laboratory RABiTS™ textured metal tape substrates. This new YBCO solution deposition method suggests a route toward inexpensive and commercializable ∼$10/kA m solution deposited YBCO coated conductor wires.

  16. A rapid and simple method for the separation of pure lymphocytes from horse blood.

    PubMed

    Zizzadoro, Claudia; Belloli, Chiara; Badino, Paola; Ormas, Paolo

    2002-10-01

    A method for the separation of pure and viable lymphocytes and granulocytes from the same blood sample in horses was reported. By centrifuging equine heparinized blood at 100 xg for 10 min at room temperature (r.t.), the resulting supernatant plasma was an almost pure (97.71 +/- 0.30%; n = 15) suspension of highly viable (98.72 +/- 0.28%) lymphocytes. When sodium citrate was used as an anticoagulant, lymphocyte suspensions collected in the same manner showed lower purity (87.89 +/- 1.59%; n = 9) and higher yields (56.56 +/- 3.89%, n = 9 versus 36.11 +/- 2.23%, n = 15). Where needed, a further centrifugation at 250 xg for 3 min (r.t.) of heparinized lymphocyte preparations removed an average of 87.39% (n = 15) contaminating platelets. A suspension of 85.96 +/- 2.20% pure granulocytes (93.23 +/- 1.74% neutrophils; n = 14) with minimal contamination by erythrocytes and high viability (93.11 +/- 1.26%) was obtained by performing a flash red blood cell lysis on the white-greyish layer resulting from the centrifugation of the heparinized blood samples. Among the several methods available, the procedure described herein is easy, rapid, cheap and reproducible. PMID:12208055

  17. Novel Methods of Enhanced Retention in and Rapid, Targeted Release from Liposomes

    PubMed Central

    Zasadzinski, Joseph A.; Wong, Benjamin; Forbes, Natalie; Braun, Gary; Wu, Guohui

    2011-01-01

    Liposomes are single bilayer capsules with distinct interior compartments in which hydrophilic drugs, imaging agents, diagnostics, etc. can be sequestered from the exterior environment. The polar parts of the individual lipids face the water compartments, while the hydrophobic parts of the lipid provide a barrier in which hydrophilic or charged molecules are poorly soluble. Hydrophobic molecules can be dissolved within the bilayer. The bilayers are typically from 3 – 6 nm thick and the liposome can range from about 50 nm - 50 microns in diameter. The question asked in this review is if any one bilayer, regardless of its composition, can provide the extended drug retention, long lifetime in the circulation, active targeting to specific tissues and rapid and controllable drug release at the site of interest. As an alternative, we review methods of self-assembling multicompartment lipid structures that provide enhanced drug retention in physiological environments. We also review methods of externally targeting and triggering drug release via the near infrared heating of gold nanoshells attached to or encapsulated within bilayer vesicles. PMID:21603081

  18. Rapid purity check method for susceptibility testing of M. tuberculosis complex with the MGIT 960 system.

    PubMed

    Huang, Tsi-Shu; Liu, Yung-Ching; Tu, Hui-Zin; Sy, Cheng-Len; Chen, Yao-Shen; Chen, Bao-Chen

    2007-01-01

    The Bactec MGIT 960 system is a rapid and reliable automated method for drug susceptibility testing of Mycobacterium tuberculosis complex (MTBC) that yields a high percentage of agreement with the standard method. The microscopic cord morphology of M. tuberculosis in liquid medium is characteristic, and readily differentiates MTBC from nontuberculous mycobacteria (NTM). The goals of this study were to describe the microscopic and macroscopic growth morphology of MTBC in antimicrobial-containing MGIT tubes and to evaluate the usefulness of the growth appearance during purity checking. The macroscopic cotton wool-like appearance of MTBC isolates in isoniazid (INH), streptomycin (SM), rifampin (RMP), and ethambutol (EMB)-containing tubes was observed in 97, 90, 93, and 71% of the isolates, respectively. The percentage of typical cord, loose, or frayed rope microscopic features in smears prepared from MTBC-positive cultures of INH, SM, RMP, and EMB-containing tubes was 96, 86, 97, and 71%, respectively. The sensitivity of the macroscopic morphology for predicting the purity of drug-containing MGIT tubes was 93%, while the microscopic morphology predicted the purity with a sensitivity rate of 92%. We found that simply examining the macroscopic morphology of the antimicrobial-containing MGIT tubes of drug-resistant MTBC isolates is useful in preventing false resistant results of susceptibility testing by the MGIT 960 system. PMID:18000288

  19. Rapid Separation Methods to Characterize Actinides and Metallic Impurities in Plutonium Scrap Materials at SRS

    SciTech Connect

    Maxwell, S.L. III; Jones, V.D.

    1998-07-01

    The Nuclear Materials Stabilization and Storage Division at SRS plans to stabilize selected plutonium scrap residue materials for long term storage by dissolution processing and plans to stabilize other plutonium vault materials via high-temperature furnace processing. To support these nuclear material stabilization activities, the SRS Analytical Laboratories Department (ALD) will provide characterization of materials required prior to the dissolution or the high-firing of these materials. Lab renovations to install new analytical instrumentation are underway to support these activities that include glove boxes with simulated-process dissolution and high- pressure microwave dissolution capability. Inductively-coupled plasma atomic emission spectrometry (ICP-AES), inductively- coupled mass spectrometry (ICP-MS) and thermal-ionization mass spectrometry (TIMS) will be used to measure actinide isotopics and metallic impurities. New high-speed actinide separation methods have been developed that will be applied to isotopic characterization of nuclear materials by TIMS and ICP-MS to eliminate isobaric interferences between Pu-238 /U- 238 and Pu-241/Am-241. TEVA Resin, UTEVA Resin, and TRU Resin columns will be used with vacuum-assisted flow rates to minimize TIMS and ICP-MS sample turnaround times. For metallic impurity analysis, rapid column removal methods using UTEVA Resin, AGMP-1 anion resin and AG MP-50 cation resin have also been developed to remove plutonium and uranium matrix interferences prior to ICP-AES and ICP- MS measurements.

  20. New multiplex PCR methods for rapid screening of genetically modified organisms in foods

    PubMed Central

    Datukishvili, Nelly; Kutateladze, Tamara; Gabriadze, Inga; Bitskinashvili, Kakha; Vishnepolsky, Boris

    2015-01-01

    We present novel multiplex PCR methods for rapid and reliable screening of genetically modified organisms (GMOs). New designed PCR primers targeting four frequently used GMO specific sequences permitted identification of new DNA markers, in particular 141 bp fragment of cauliflower mosaic virus (CaMV) 35S promoter, 224 bp fragment of Agrobacterium tumefaciens nopaline synthase (NOS) terminator, 256 bp fragment of 5-enolppyruvylshikimate-phosphate synthase (epsps) gene and 258 bp fragment of Cry1Ab delta-endotoxin (cry1Ab) gene for GMO screening. The certified reference materials containing Roundup Ready soybean (RRS) and maize MON 810 were applied for the development and optimization of uniplex and multiplex PCR systems. Evaluation of amplification products by agarose gel electrophoresis using negative and positive controls confirmed high specificity and sensitivity at 0.1% GMO for both RRS and MON 810. The fourplex PCR was developed and optimized that allows simultaneous detection of three common transgenic elements, such as: CaMV 35S promoter, NOS terminator, epsps gene together with soybean-specific lectin gene. The triplex PCR developed enables simultaneous identification of transgenic elements, such as: 35S promoter and cry1Ab gene together with maize zein gene. The analysis of different processed foods demonstrated that multiplex PCR methods developed in this study are useful for accurate and fast screening of GM food products. PMID:26257724

  1. Method of rapid determination of MHD equilibrium properties with the modified version of the SURFAS code

    SciTech Connect

    Lee, D.K.; Hirshman, S.P.; Okabayashi, M.; Reusch, M.F.; Sun, Y.C.

    1993-09-01

    Rapid determination of MHD eqilibrium properties of tokamak plasmas is carried out by means of an approximation method based on the use of database files. These are computed a priori from MHD equilibrium solutions obtained by performing reconstruction to match experimental measurements, which include motional Stark effect (MSE) data. The procedure carries out a single iteration of Newton`s method to determine the poloidal variation of the toroidal plasma current density in the equilibrium form j{sub {phi}} = {minus}2{pi}({mu}{sub 0}Rp{prime} + FF{prime}/R) by representing p{prime}({psi}) and F({psi})F{prime}({psi}) in series expansions of Chebyshev polynomials. The polynominal expansion coefficients are obtained through a least-squares data fitting process similar to that used in the equilibrium reconstruction. Knowing the current density j{phi} allows the determination of the internal q-profile from the MSE data. This important stability parameter is generally unavailable from a current filament model. Numerical results calculated in this approach are compared with those determined from an accurate solution of the Grad-Shafranov equation, subject to a similar set of magnetic and pressure measurement constraints.

  2. A rapid method to authenticate vegetable oils through surface-enhanced Raman scattering.

    PubMed

    Lv, Ming Yang; Zhang, Xin; Ren, Hai Rui; Liu, Luo; Zhao, Yong Mei; Wang, Zheng; Wu, Zheng Long; Liu, Li Min; Xu, Hai Jun

    2016-01-01

    Vegetable oils are essential in our daily diet. Among various vegetable oils, the major difference lies in the composition of fatty acids, including unsaturated fatty acids (USFA) and saturated fatty acids (SFA). USFA include oleic acid (OA), linoleic acid (LA), and α-linolenic acid (ALA), while SFA are mainly palmitic acid (PA). In this study, the most typical and abundant USFA present with PA in vegetable oils were quantified. More importantly, certain proportional relationships between the integrated intensities of peaks centered at 1656 cm(-1) (S1656) in the surface-enhanced Raman scattering spectra of different USFA were confirmed. Therefore, the LA or ALA content could be converted into an equivalent virtual OA content enabling the characterization of the USFA content in vegetable oils using the equivalent total OA content. In combination with the S1656 of pure OA and using peanut, sesame, and soybean oils as examples, the ranges of S1656 corresponding to the National Standards of China were established to allow the rapid authentication of vegetable oils. Gas chromatograph-mass spectrometer analyses verified the accuracy of the method, with relative errors of less than 5%. Moreover, this method can be extended to other detection fields, such as diseases. PMID:26987802

  3. Comparing rapid and culture indicator bacteria methods at inland lake beaches

    USGS Publications Warehouse

    Francy, Donna S.; Bushon, Rebecca N.; Brady, Amie M.G.; Kephart, Christopher M.

    2013-01-01

    A rapid method, quantitative polymerase chain reaction (qPCR), for quantifying indicator bacteria in recreational waters is desirable for public health protection. We report that replacing current Escherichia coli standards with new US Environmental Protection Agency beach action values (BAVs) for enterococci by culture or qPCR may result in more advisories being posted at inland recreational lakes. In this study, concentrations of E. coli and enterococci by culture methods were compared to concentrations of Enterococcus spp. by qPCR at 3 inland lake beaches in Ohio. The E. coli and enterococci culture results were significantly related at all beaches; however, the relations between culture results and Enterococcus spp. qPCR results were not always significant and differed among beaches. All the qPCR results exceeded the new BAV for Enterococcus spp. by qPCR, whereas only 23.7% of culture results for E. coli and 79% of culture results for enterococci exceeded the current standard for E. coli or BAV for enterococci.

  4. A rapid method to authenticate vegetable oils through surface-enhanced Raman scattering

    NASA Astrophysics Data System (ADS)

    Lv, Ming Yang; Zhang, Xin; Ren, Hai Rui; Liu, Luo; Zhao, Yong Mei; Wang, Zheng; Wu, Zheng Long; Liu, Li Min; Xu, Hai Jun

    2016-03-01

    Vegetable oils are essential in our daily diet. Among various vegetable oils, the major difference lies in the composition of fatty acids, including unsaturated fatty acids (USFA) and saturated fatty acids (SFA). USFA include oleic acid (OA), linoleic acid (LA), and α-linolenic acid (ALA), while SFA are mainly palmitic acid (PA). In this study, the most typical and abundant USFA present with PA in vegetable oils were quantified. More importantly, certain proportional relationships between the integrated intensities of peaks centered at 1656 cm‑1 (S1656) in the surface-enhanced Raman scattering spectra of different USFA were confirmed. Therefore, the LA or ALA content could be converted into an equivalent virtual OA content enabling the characterization of the USFA content in vegetable oils using the equivalent total OA content. In combination with the S1656 of pure OA and using peanut, sesame, and soybean oils as examples, the ranges of S1656 corresponding to the National Standards of China were established to allow the rapid authentication of vegetable oils. Gas chromatograph-mass spectrometer analyses verified the accuracy of the method, with relative errors of less than 5%. Moreover, this method can be extended to other detection fields, such as diseases.

  5. A rapid and simple HPLC method for the analysis of propofol in biological fluids.

    PubMed

    Cussonneau, Xavier; De Smet, Els; Lantsoght, Kristof; Salvi, Jean-Paul; Bolon-Larger, Magali; Boulieu, Roselyne

    2007-07-27

    A selective and sensitive high-performance liquid chromatographic method for the analysis of propofol in biological samples was developed. Propofol and thymol (internal standard) were analysed on a Purospher RP-18 endcapped (75 mmx4 mm, 3 microm) stationary phase using acetonitrile and water (65:35, v/v) as eluents at a flow rate of 0.6 mL/min. The excitation and emission wavelengths were 276 and 310 nm, respectively. Sample treatment consisted of deproteinization by acetonitrile containing the internal standard and direct injection of the supernatant. Mean analytical recovery were 105% (CV 2.0%) at concentrations ranging from 0.05 to 10 mg/L. The quantification limit was 3 ng/mL for a 500 microL sample plasma volume and 5 ng/mL for a 500 microL blood sample. The intra-day and inter-day precisions were lower than 5.5% for three concentrations assessed (0.05, 1.0 and 10.0 mg/L). Considering the column size and the flow rate, the separation was achieved with an analysis time less than 6 min with a reduced consumption of solvent. This rapid HPLC method using a simple treatment procedure is sensitive enough for monitoring propofol in human biological samples. PMID:17129698

  6. Rapid method for monitoring chitosan coagulation using low-field NMR relaxometry.

    PubMed

    Kock, Flávio Vinicius Crizóstomo; Colnago, Luiz Alberto

    2016-10-01

    Time-domain NMR relaxometry was proposed as a simple, rapid method to monitor chitosan (CS) coagulation as a function of pH. The longitudinal (T1) and transverse (T2) relaxation times of three CS concentrations (0.022, 0.22, and 2.2gL(-1)) were simultaneously measured by CP-CWFPx-x pulse sequences in a 0.47T spectrometer. T1 and T2 were shown to be independent of pH as well as to assume values similar to the relaxation time of water (2.7s) at the lowest tested CS concentration. At the highest concentration, T1 increased whereas T2 decreased as pH varied from 6.0 to 7.0. This indicates a remarkable effect of CS on water relaxation at pH values higher than the pKa of CS amino groups (6.5). Therefore, CS reduced the water mobility at the highest CS concentration and greatest pH values, suggesting a CS supramolecular structure (gel) that entraps the solvent in confined regions. The method proposed here can be further used to study the coagulation of other polysaccharides. PMID:27312606

  7. A rapid method to verify single-cell deposition setup for cell sorters.

    PubMed

    Rodrigues, Olivia Roos; Monard, Simon

    2016-06-01

    Studying single cells reveals biology that cannot be explored using bulk techniques. Cell sorters provide the opportunity of separating single cells either for cell culture or for downstream molecular applications such as qPCR to study specific gene expression and single cell mRNA sequencing. Some of these molecular studies can be expensive so the investigator will often want reassurance that the cell sorter can reliably deposit a single droplet into each well of a 96-well or 384-well plate. Such plates may contain very small volumes of fluid as reducing the volume of fluid used can reduce the cost of the assay. To miss some of the wells could leave the data set incomplete requiring costly repetition. To verify this by microscopy is at best very time consuming and at worst impossible. Here, an inexpensive colorimetric method is described for verifying whether a well, in either a 96- or 384-well plate, did receive a single sorted droplet from a cell sorter into the fluid at the bottom of the well. The droplet consists of particles suspended in an enzymatic solution, horseradish peroxidase, which is deposited into microtiter plate wells containing a substrate, 3,3',5,5'-tetramethylbenzidine. This method requires no special equipment or expertise and is rapid enough to be performed directly prior to the single-cell sorting experiment. © 2016 International Society for Advancement of Cytometry. PMID:27144818

  8. Rapid LC-TOFMS method for identification of binding sites of covalent acylglucuronide-albumin complexes.

    PubMed

    Ohkawa, T; Norikura, R; Yoshikawa, T

    2003-04-10

    A method for rapid identification of binding sites of covalent adducts was developed using delta bilirubin as a model compound. Delta bilirubin, containing intact human serum albumin (HSA), was digested with trypsin and the peptide fragments were monitored at 436 nm, but no predominant peaks were detected indicating the instability of the digested peptides containing bilirubin-related compounds. Therefore, the high-performance liquid chromatography time-of-flight mass spectrometer (LC-TOFMS) data of digested fragments of delta bilirubin were compared with those of control digests of HSA, revealing a characteristic peptide in the digest mixture of delta bilirubin. This peptide was sequenced by high-performance liquid chromatography time-of-flight tandem mass spectrometry (LC-TOFMS/MS) and identified as LDELRDEGKASSAK (Leu182 to Lys195) with a modification of a 178 Da increase at Lys190. This indicated the Lys190 to be a predominant covalent binding site of BGs on HSA via the imine mechanism and the binding between the bilirubin moiety and the glucuronic acid moiety to be unstable to digestion with trypsin. The method of comparing LC-TOFMS data requires no specific detection such as fluorescence or radioactivity for every compound. This should accelerate the structure elucidation of covalent adducts and be helpful for studying the relationship between the structure of ligands and specific binding sites. PMID:12667932

  9. A rapid and reversible skull optical clearing method for monitoring cortical blood flow

    NASA Astrophysics Data System (ADS)

    Zhang, Chao; Zhao, Yanjie; Shi, Rui; Zhu, Dan

    2016-03-01

    In vivo cortex optical imaging is of great important for revealing both structural and functional architecture of brain with high temporal-spatial resolution. To reduce the limitation of turbid skull, researchers had to establish various skull windows or directly expose cortex through craniotomy. Here we developed a skull optical clearing method to make skull transparent. Laser speckle contrast imaging technique was used to monitor the cortical blood flow after topical treatment with the optical clearing agents. The results indicated that the image contrast increased gradually, and then maintained at a high level after 15 min for adult mice, which made the image quality and resolution of micro-vessels nearly approximate to those of exposed cortex. Both the cortical blood flow velocity almost kept constant after skull became transparent. Besides, the treatment of physiological saline on the skull could make skull return to the initial state again and the skull could become transparent again when SOCS retreated it. Thus, we could conclude that the skull optical clearing method was rapid, valid, reversible and safe, which provided us available approach for performing the cortical structural and functional imaging at high temporal-spatial resolution.

  10. Method and apparatus for rapid stopping and starting of a thermoacoustic engine

    DOEpatents

    Swift, Gregory W.; Backhaus, Scott N.; Gardner, David L.

    2003-11-11

    A thermoacoustic engine-driven system with a hot heat exchanger, a regenerator or stack, and an ambient heat exchanger includes a side branch load for rapid stopping and starting, the side branch load being attached to a location in the thermoacoustic system having a nonzero oscillating pressure and comprising a valve, a flow resistor, and a tank connected in series. The system is rapidly stopped simply by opening the valve and rapidly started by closing the valve.

  11. Laboratory radiometric calibration for the convex grating imaging spectrometer

    NASA Astrophysics Data System (ADS)

    Zhou, Jiankang; Chen, Xinhua; Chen, Yuheng; Ji, Yiqun; Shen, Weimin

    2014-09-01

    The radiometric calibration of imaging spectrometer plays an import role for scientific application of spectral data. The radiometric calibration accuracy is influenced by many factors, such as the stability and uniformity of light source, the transfer precision of radiation standard and so on. But the deviation from the linear response mode and the polarization effect of the imaging spectrometer are always neglected. In this paper, the linear radiometric calibration model is constructed and the radiometric linear response capacity is test by adjusting electric gain, exposure time and radiance level. The linear polarizer and the sine function fitting algorithm are utilized to measure polarization effect. The integrating sphere calibration system is constructed in our Lab and its spectral radiance is calibrated by a well-characterized and extremely stable NIST traceable transfer spectroradiometer. Our manufactured convex grating imaging spectrometer is relative and absolute calibrated based on the integrating sphere calibration system. The relative radiometric calibration data is used to remove or reduce the radiometric response non-uniformity every pixel of imaging spectrometer while the absolute radiometric calibration is used to construct the relationship between the physical radiant of the scene and the digital number of the image. The calibration coefficients are acquired at ten radiance levels. The diffraction noise in the images can be corrected by the calibration coefficients and the uniform radiance image can be got. The calibration result shows that our manufactured imaging spectrometer with convex grating has 3.0% degree of polarization and the uncertainties of the relative and absolute radiometric calibrations are 2.4% and 5.6% respectively.

  12. Development of a Rapid Assessment Method for Quantifying Carbon Sequestration on Reclaimed Coal Mine Sites

    NASA Astrophysics Data System (ADS)

    Maharaj, S.; Barton, C. D.; Karathanasis, A. D.

    2005-12-01

    Projected climate change resulting from elevated atmospheric carbon dioxide has given rise to various strategies designed to sequester carbon in various terrestrial ecosystems. Reclaimed coal mine soils present one such potential carbon sink where traditional reclamation objectives can complement carbon sequestration. However, quantifying new carbon (carbon that has been added to soil through recent biological processes) on reclaimed mine soils have proven to be difficult due to carbonates and coal particles present in the reclaimed coal mine spoils. Visible coal particles can be removed, but the microscopic coal dust particles remain. Additionally, with the advent of carbon trading on the stock market, rapid quantification of newly sequestered carbon has proven to be elusive. The focus of this project is to assess the potential of thermogravimetric analysis as a rapid, simple and direct method for differentiating and quantifying new carbon from old carbon (carbon of geologic origin) on reclaimed coal mine sites and provide a standard procedure for determining carbon sequestered in soil sinks. Thermogravimetry is a physico-chemical technique where the weight change is measured and recorded during the incremental heating of the soil sample over a temperature range of 25 to 1000 ° C. Grass litter and limestone were used as representative organic and inorganic carbon fractions, while coal was used to differentiate the old and new carbon within the organic fraction. Recoveries of mixtures at the 95 % confidence interval were found to be 94.49 ± 4.23 % (coal) , 93.67 ± 2.11 % (litter) , and 108.88 ± 2.88 % (limestone) respectively. Each of the above components appeared as distinct separate peaks on the thermograph, with litter appearing between 260 to 390 ° C, coal 425 to 480 ° C, and limestone 640 to 740 ° C. Overlapping peaks for the organic carbon represented by the grass litter may be indicative of cellulose and lignin fractions. Ongoing work in this area is

  13. The absolute radiometric calibration of the advanced very high resolution radiometer

    NASA Technical Reports Server (NTRS)

    Slater, P. N.; Teillet, P. M.; Ding, Y.

    1988-01-01

    The need for independent, redundant absolute radiometric calibration methods is discussed with reference to the Thematic Mapper. Uncertainty requirements for absolute calibration of between 0.5 and 4 percent are defined based on the accuracy of reflectance retrievals at an agricultural site. It is shown that even very approximate atmospheric corrections can reduce the error in reflectance retrieval to 0.02 over the reflectance range 0 to 0.4.

  14. Impact of the cameras radiometric resolution on the accuracy of determining spectral reflectance coefficients

    NASA Astrophysics Data System (ADS)

    Orych, A.; Walczykowski, P.; Jenerowicz, A.; Zdunek, Z.

    2014-11-01

    Nowadays remote sensing plays a very important role in many different study fields, i.e. environmental studies, hydrology, mineralogy, ecosystem studies, etc. One of the key areas of remote sensing applications is water quality monitoring. Understanding and monitoring of the water quality parameters and detecting different water contaminants is an important issue in water management and protection of whole environment and especially the water ecosystem. There are many remote sensing methods to monitor water quality and detect water pollutants. One of the most widely used method for substance detection with remote sensing techniques is based on usage of spectral reflectance coefficients. They are usually acquired using discrete methods such as spectrometric measurements. These however can be very time consuming, therefore image-based methods are used more and more often. In order to work out the proper methodology of obtaining spectral reflectance coefficients from hyperspectral and multispectral images, it is necessary to verify the impact of cameras radiometric resolution on the accuracy of determination of them. This paper presents laboratory experiments that were conducted using two monochromatic XEVA video sensors (400-1700 nm spectral data registration) with two different radiometric resolutions (12 and 14 bits). In view of determining spectral characteristics from images, the research team used set of interferometric filters. All data collected with multispectral digital video cameras were compared with spectral reflectance coefficients obtained with spectroradiometer. The objective of this research is to find the impact of cameras radiometric resolution on reflectance values in chosen wavelength. The main topic of this study is the analysis of accuracy of spectral coefficients from sensors with different radiometric resolution. By comparing values collected from images acquired with XEVA sensors and with the curves obtained with spectroradiometer it

  15. Crossing Methods and Cultivation Conditions for Rapid Production of Segregating Populations in Three Grain Amaranth Species

    PubMed Central

    Stetter, Markus G.; Zeitler, Leo; Steinhaus, Adrian; Kroener, Karoline; Biljecki, Michelle; Schmid, Karl J.

    2016-01-01

    Grain amaranths (Amaranthus spp.) have been cultivated for thousands of years in Central and South America. Their grains are of high nutritional value, but the low yield needs to be increased by selection of superior genotypes from genetically diverse breeding populations. Amaranths are adapted to harsh conditions and can be cultivated on marginal lands although little is known about their physiology. The development of controlled growing conditions and efficient crossing methods is important for research on and improvement of this ancient crop. Grain amaranth was domesticated in the Americas and is highly self-fertilizing with a large inflorescence consisting of thousands of very small flowers. We evaluated three different crossing methods (open pollination, hot water emasculation and hand emasculation) for their efficiency in amaranth and validated them with genetic markers. We identified cultivation conditions that allow an easy control of flowering time by day length manipulation and achieved flowering times of 4 weeks and generation times of 2 months. All three different crossing methods successfully produced hybrid F1 offspring, but with different success rates. Open pollination had the lowest (10%) and hand emasculation the highest success rate (74%). Hot water emasculation showed an intermediate success rate (26%) with a maximum of 94% success. It is simple to perform and suitable for a more large-scale production of hybrids. We further evaluated 11 single nucleotide polymorphism (SNP) markers and found that they were sufficient to validate all crosses of the genotypes used in this study for intra- and interspecific hybridizations. Despite its very small flowers, crosses in amaranth can be carried out efficiently and evaluated with inexpensive SNP markers. Suitable growth conditions strongly reduce the generation time and allow the control of plant height, flowering time, and seed production. In combination, this enables the rapid production of segregating

  16. Crossing Methods and Cultivation Conditions for Rapid Production of Segregating Populations in Three Grain Amaranth Species.

    PubMed

    Stetter, Markus G; Zeitler, Leo; Steinhaus, Adrian; Kroener, Karoline; Biljecki, Michelle; Schmid, Karl J

    2016-01-01

    Grain amaranths (Amaranthus spp.) have been cultivated for thousands of years in Central and South America. Their grains are of high nutritional value, but the low yield needs to be increased by selection of superior genotypes from genetically diverse breeding populations. Amaranths are adapted to harsh conditions and can be cultivated on marginal lands although little is known about their physiology. The development of controlled growing conditions and efficient crossing methods is important for research on and improvement of this ancient crop. Grain amaranth was domesticated in the Americas and is highly self-fertilizing with a large inflorescence consisting of thousands of very small flowers. We evaluated three different crossing methods (open pollination, hot water emasculation and hand emasculation) for their efficiency in amaranth and validated them with genetic markers. We identified cultivation conditions that allow an easy control of flowering time by day length manipulation and achieved flowering times of 4 weeks and generation times of 2 months. All three different crossing methods successfully produced hybrid F1 offspring, but with different success rates. Open pollination had the lowest (10%) and hand emasculation the highest success rate (74%). Hot water emasculation showed an intermediate success rate (26%) with a maximum of 94% success. It is simple to perform and suitable for a more large-scale production of hybrids. We further evaluated 11 single nucleotide polymorphism (SNP) markers and found that they were sufficient to validate all crosses of the genotypes used in this study for intra- and interspecific hybridizations. Despite its very small flowers, crosses in amaranth can be carried out efficiently and evaluated with inexpensive SNP markers. Suitable growth conditions strongly reduce the generation time and allow the control of plant height, flowering time, and seed production. In combination, this enables the rapid production of segregating

  17. Improved method for rapid shape recovery of large specular surfaces based on phase measuring deflectometry.

    PubMed

    Zhou, Tian; Chen, Kun; Wei, Haoyun; Li, Yan

    2016-04-01

    Incorporating the modal and zonal estimation approaches into a unifying scheme, we introduce an improved three-dimensional shape reconstruction version of specular surfaces based on phase measuring deflectometry in this paper. The modal estimation is first implemented to derive the coarse height information of the measured surface as initial iteration values. Then the real shape can be recovered utilizing a modified zonal wavefront reconstruction algorithm to simultaneously achieve consistently high accuracy and dramatically rapid convergence. Moreover, the iterative process based on an advanced successive over-relaxation technique shows a consistent rejection of measurement errors, guaranteeing the stability and robustness in practical applications. The reconstruction results of numerical examples of the sphere, hyperbolic, and arbitrary surfaces, as well as an experimentally measured sphere mirror demonstrate the validity and efficiency of the proposed improved method. In the simulations, the proposed method increases the rate of convergence by fourfold compared with the existing zonal approach and realizes three orders of magnitude improvement in reconstruction accuracy compared with the modal technique when handling the sample points of 401×401  pixels of a sphere surface. Furthermore, the computation time decreases approximately 74.92% in contrast to the zonal estimation, and the surface error is about 6.68 μm with reconstruction points of 391×529  pixels of an experimentally measured sphere mirror. In general, this new method can be conducted with fast convergence speed and high accuracy, providing an efficient, stable, and real-time approach for shape reconstruction in practical situations. PMID:27139683

  18. Radiometric Meteorology: radon progeny as tracers

    NASA Astrophysics Data System (ADS)

    Greenfield, Mark; Iwata, Atsushi; Ito, Nahoko; Kubo, Kenya; Komura, Kazu; Ishizaki, Miho

    2008-10-01

    In-situ measurement of atmospheric γ radiation from radon progeny determine rain and snow rates to better accuracy than standard rain gauges and gives a handle on how droplets are formed. The measured γ ray rates (GRR) have been shown to be proportional to a power of radiometric precipitation rates (RPR)^α, α giving a handle on the extent to which radon progeny are surface adsorbed or volume absorbed.ootnotetextM. B. Greenfield et al., J. Appl. Phys. 93, (2003) pp 5733-5741. More recently time dependent ratios of GRR from ^214Pb and ^214Bi, concentrated from collected rainwater, have been used to determine the elapsed time since activity from RPR, adhered to rain droplets, was removed from secular equilibrium. Ion exchange resins precipitate out the ^214Pb and ^214Bi ions, which are then filtered from 10s of liters of rainwater or snowmelt. A portable Ge detector is used to integrate the resulting activity over 5-10 min intervals. The measured evolution of these two activities from secular equilibrium to transient equilibrium has meteorological applications enabling both the determination of average elapsed times between the formation of raindrops and the time they reach the ground, as well as an estimate of the initial activity at the source of droplet formation.

  19. Radiometric calibration of the EO-1 Advanced Land Imager

    NASA Astrophysics Data System (ADS)

    Mendenhall, Jeffrey A.; Lencioni, Donald E.; Parker, Alexander C.

    1999-09-01

    The radiometric calibration of the Earth Observation 1 Advanced Land Imager (EO-1 ALI) was completed in the Spring of 1999 at Lincoln Laboratory. This calibration was conducted with the ALI as a fully assembled instrument in a thermal vacuum chamber at operation temperatures. The ALI was calibrated radiometrically at the system level from 0 to > 100 percent Earth-equivalent albedo using a combination of internal and external halogen and Xenon lamps attached to a large integrating sphere. Absolute radiometric calibration was achieved by measuring the output of the integrating sphere at each radiance level prior to ALI illumination using a NIST-traceable spectroradiometer. Additional radiometric characterization of this instrument was obtained from data collected using a collimator designed for the spectral calibration of the ALI. In this paper we review the techniques employed during radiometric calibration and present the measured gain, linearity, offset, signal-to- noise ratio and polarization sensitivity of each pixel. The testing result of a novel, in-flight solar calibration technique are also discussed. Finally, the results from a Lincoln Laboratory/Goddard Space Flight Center Landsat transfer radiometric study are presented.

  20. Designing an in-flight airborne calibration site using experience from vicarious radiometric satellite calibration

    NASA Astrophysics Data System (ADS)

    Livens, Stefan; Debruyn, Walter; Sterckx, Sindy; Reusen, Ils

    2011-11-01

    Laboratory calibration of electro-optical sensors is preferably complemented by regular in-flight verification. This checks whether the lab calibration parameters remain valid or recalibration is necessary. In-flight verification can be achieved by vicarious calibration using in-flight measurements of calibration targets. We intend to identify and design a set of suitable radiometric calibration targets. For this, we borrow from expertise gained with the PROBA-V satellite calibration system, which uses multiple vicarious methods relying on diverse natural on-ground targets. Besides reflectance based calibration using ground measurements, the PROBA-V calibration methods are unproven for use in airborne calibration. The selected targets should be suitable for the calibration of both multispectral and hyperspectral imagers. We start from general requirements for radiometric targets and investigate their applicability to airborne calibration. From this we identify two possible sets of natural calibration sites in Belgium. One set, located in the Campine region, contains small water bodies and sandy lakesides. Another set is located in the Westhoek region near the Belgian coast. It offers better suitable water bodies, as well as sandy areas, grass fields and dark targets. Airborne calibration lends itself to the use of smaller artifical targets. We propose to complement the natural targets with a portable target consisting of agricultural nets with different densities. The definition of sets of calibration targets, both natural and artificial can facilitate the investigation of the usability of vicarious targets and method for inflight radiometric verification.