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Sample records for rapidly growing field

  1. A rapidly growing lid lump

    PubMed Central

    Koay, Su-Yin; Lee, Richard M H; Hugkulstone, Charles; Rodrigues, Ian Aureliano Stephen

    2014-01-01

    A 97-year-old woman presented with a 5-month history of a rapidly growing, painless, left upper eyelid lesion. Examination revealed a large vascularised, ulcerated nodule on the left upper lid, causing significant ptosis. Wide local excision of the lesion was performed and the wound was left to heal by secondary intention. Histology and immunohistochemistry of the lesion confirmed a diagnosis of Merkel cell carcinoma, a rare primary malignancy of the eyelid which has significant morbidity and mortality. Although uncommon, this diagnosis should always be considered in any patient with a rapidly growing lid lump. In view of the patient's age, known dementia and family wishes, the patient was managed conservatively, with no further investigations performed. She was due to be followed up in clinic on a regular basis, but has since died from other causes. PMID:25123568

  2. The treatment of rapidly growing mycobacterial infections.

    PubMed

    Kasperbauer, Shannon H; De Groote, Mary Ann

    2015-03-01

    Rapidly growing mycobacteria (RGM) include a diverse group of species. We address the treatment of the most commonly isolated RGM-M abscessus complex, M fortuitum, and M chelonae. The M abscessus complex is composed of 3 closely related species: M abscessus senso stricto (hereafter M abscessus), M massiliense, and M bolletii. Most studies address treatment of M abscessus complex, which accounts for 80% of lung disease caused by RGM and is the second most common RGM to cause extrapulmonary disease (after M fortuitum). The M abscessus complex represent the most drug-resistant nontuberculous mycobacteria and are the most difficult to treat. PMID:25676520

  3. Laboratory aspects of clinically significant rapidly growing mycobacteria.

    PubMed

    Set, R; Shastri, J

    2011-01-01

    The pathogenic potential of the rapidly growing mycobacteria (RGM) has started being recognized. This is due to more sensitive and specific techniques in the laboratory. The RGM are generally defined as nontuberculous species of mycobacteria that show visible growth on agar media within 7 days. RGM are widely distributed in nature and have been isolated from natural water, tap water, and soil. Several biochemical tests, high performance liquid chromatography, and molecular techniques have been developed for rapid identification of these species. The American Thoracic Society and the Infectious Disease Society of America recommend that RGM should be identified to the species level using a recognized acceptable methodology such as polymerase chain reaction restriction enzyme analysis or biochemical testing and routine susceptibility testing of RGM should include amikacin, imipenem, doxycycline, the fluorinated quinolones, a sulphonamide or trimethoprim-sulphamethoxazole, cefoxitin, clarithromycin, linezolid, and tobramycin. The diseases caused by these organisms have varied manifestations. They have been responsible for a number of healthcare-associated outbreaks and pseudo-outbreaks. For recognition of outbreaks, it is important to be familiar with the causative organisms like RGM which are most frequently involved in healthcare-associated outbreaks and pseudo outbreaks. It is essential to intervene as soon as possible to interrupt this transmission. Large gaps still exist in our knowledge of RGM. Unquestionably more studies are required. Through this review, we wish to emphasize that reporting of RGM from clinical settings along with their sensitivity patterns is an absolute need of the hour. PMID:22120792

  4. Glasses crystallize rapidly at free surfaces by growing crystals upward

    PubMed Central

    Sun, Ye; Zhu, Lei; Kearns, Kenneth L.; Ediger, Mark D.; Yu, Lian

    2011-01-01

    The crystallization of glasses and amorphous solids is studied in many fields to understand the stability of amorphous materials, the fabrication of glass ceramics, and the mechanism of biomineralization. Recent studies have found that crystal growth in organic glasses can be orders of magnitude faster at the free surface than in the interior, a phenomenon potentially important for understanding glass crystallization in general. Current explanations differ for surface-enhanced crystal growth, including released tension and enhanced mobility at glass surfaces. We report here a feature of the phenomenon relevant for elucidating its mechanism: Despite their higher densities, surface crystals rise substantially above the glass surface as they grow laterally, without penetrating deep into the bulk. For indomethacin (IMC), an organic glass able to grow surface crystals in two polymorphs (α and γ), the growth front can be hundreds of nanometers above the glass surface. The process of surface crystal growth, meanwhile, is unperturbed by eliminating bulk material deeper than some threshold depth (ca. 300 nm for α IMC and less than 180 nm for γ IMC). As a growth strategy, the upward-lateral growth of surface crystals increases the system’s surface energy, but can effectively take advantage of surface mobility and circumvent slow growth in the bulk. PMID:21444775

  5. Intraoral tumor with rapid growing. Report of a case.

    PubMed

    González-Martín-Moro, Javier; Cebrián-Carretero, Jose Luis; Gómez-García, Elena; del Castillo-Pardo de Vera, Jose Luis; del Val, Daniel

    2005-01-01

    The appearance of an intraoral mass is common in our specialty. Most are benign lesions, but some are primary malignancies. Metastases account for less than 1% of all oral malignancies. An 86 year old woman was referred to our department with a large, asymptomatic, intraoral, fast-growing mass. She had no previous cancer history or other relevant physical findings. The radiology studies showed underlying bone erosion. The histological study showed a metastatic adenocarcinoma with a suspected origin in the abdomen. We were unable to identify it by non invasive diagnostic procedures. Given the patient's general status and despite the ominous prognosis of such lesions, we decided not to perform any aggressive therapy beyond removing the oral mass, in order to maintain her quality of life. There have been no local recurrences until this time. PMID:16264378

  6. Halogenated graphenes: rapidly growing family of graphene derivatives.

    PubMed

    Karlický, František; Kumara Ramanatha Datta, Kasibhatta; Otyepka, Michal; Zbořil, Radek

    2013-08-27

    Graphene derivatives containing covalently bound halogens (graphene halides) represent promising two-dimensional systems having interesting physical and chemical properties. The attachment of halogen atoms to sp(2) carbons changes the hybridization state to sp(3), which has a principal impact on electronic properties and local structure of the material. The fully fluorinated graphene derivative, fluorographene (graphene fluoride, C1F1), is the thinnest insulator and the only stable stoichiometric graphene halide (C1X1). In this review, we discuss structural properties, syntheses, chemistry, stabilities, and electronic properties of fluorographene and other partially fluorinated, chlorinated, and brominated graphenes. Remarkable optical, mechanical, vibrational, thermodynamic, and conductivity properties of graphene halides are also explored as well as the properties of rare structures including multilayered fluorinated graphenes, iodine-doped graphene, and mixed graphene halides. Finally, patterned halogenation is presented as an interesting approach for generating materials with applications in the field of graphene-based electronic devices. PMID:23808482

  7. Antimicrobial susceptibility of rapidly growing mycobacteria using the rapid colorimetric method.

    PubMed

    Ramis, I B; Cnockaert, M; von Groll, A; Nogueira, C L; Leão, S C; Andre, E; Simon, A; Palomino, J C; da Silva, P E A; Vandamme, P; Martin, A

    2015-07-01

    Drug susceptibility testing (DST) of rapidly growing mycobacteria (RGM) are recommended for guiding the antimicrobial therapy. We have evaluated the use of resazurin in Mueller-Hinton medium (MHR) for MIC determination of RGM and compared the results with those obtained with the reference standard broth microdilution in Mueller-Hinton (MH) and with the resazurin microtiter assay (REMA) in 7H9 broth. The MIC of eight drugs: amikacin (AMI), cefoxitin (FOX), ciprofloxacin (CIP), clarithromycin (CLA), doxycycline (DOX), linezolid (LZD), moxifloxacin (MXF) and trimethoprim-sulfamethoxazole (TMP-SMX) were evaluated against 76 RGM (18 species) using three methods (MH, MHR, and REMA) in a 96-well plate format incubated at 37 °C over 3-5 days. Results obtained in the MH plates were interpreted by the appearance of turbidity at the bottom of the well before adding the resazurin. MHR and 7H9-REMA plates were read by visual observation for a change in color from blue to pink. The majority of results were obtained at day 5 for MH and 1 day after for MHR and 7H9-REMA. However, the preliminary experiment on time to positivity results using the reference strain showed that the resazurin can be added to the MH at day 2 to produce the results at day 3, but future studies with large sets of strains are required to confirm this suggestion. A high level of agreement (kappa 1.000-0.884) was obtained between the MH and the MHR. Comparison of results obtained with 7H9-REMA, on the other hand, revealed several discrepancies and a lower level of agreement (kappa 1.000-0.111). The majority of the strains were resistant to DOX and TMP-SMX, and the most active antimicrobials for RGM were AMI and FOX. In the present study, MHR represented an excellent alternative for MIC determination of RGM. The results could be read reliably, more easily, and more quickly than with the classical MH method. PMID:25820290

  8. Evaluation of Various Culture Media for Detection of Rapidly Growing Mycobacteria from Patients with Cystic Fibrosis.

    PubMed

    Preece, Clair L; Wichelhaus, Thomas A; Perry, Audrey; Jones, Amanda L; Cummings, Stephen P; Perry, John D; Hogardt, Michael

    2016-07-01

    Isolation of nontuberculous mycobacteria (NTM) from the sputum of patients with cystic fibrosis (CF) is challenging due to overgrowth by rapidly growing species that colonize the lungs of patients with CF. Extended incubation on Burkholderia cepacia selective agar (BCSA) has been recommended as an expedient culture method for the isolation of rapidly growing NTM in this setting. The aim of this study was to assess five selective media designed for the isolation of Burkholderia cepacia complex, along with two media designed for the isolation of mycobacteria (rapidly growing mycobacteria [RGM] medium and Middlebrook 7H11 agar), for their abilities to isolate NTM. All seven media were challenged with 147 isolates of rapidly growing mycobacteria and 185 isolates belonging to other species. RGM medium was then compared with the most selective brand of BCSA for the isolation of NTM from 224 sputum samples from patients with CF. Different agars designed for the isolation of B. cepacia complex varied considerably in their inhibition of other bacteria and fungi. RGM medium supported the growth of all isolates of mycobacteria and was more selective than any other medium. NTM were recovered from 17 of 224 sputum samples using RGM medium, compared with only 7 samples using the most selective brand of BCSA (P = 0.023). RGM medium offers a superior option, compared to other selective agars, for the isolation of rapidly growing mycobacteria from the sputum of patients with CF. Furthermore, the convenience of using RGM medium enables routine screening for rapidly growing NTM in all submitted sputum samples from patients with CF. PMID:27098962

  9. Vibrio natriegens: A Rapidly Growing Micro-Organism Ideally Suited for Class Experiments

    ERIC Educational Resources Information Center

    Mullenger, L.; Gill, Nijole R.

    1973-01-01

    Describes five microbiological experiments using the marine organism Vibrio natriegens. This organism is highly suitable for laboratory work because it is non-pathogenic and grows extremely rapidly, having the distinction of the lowest mean generation time yet recorded (9.8 minutes). (JR)

  10. Structural analysis of biofilm formation by rapidly and slowly growing nontuberculous mycobacteria

    EPA Science Inventory

    Mycobacterium avium complex (MAC) and rapidly growing mycobacteria (RGM) such as M. abscessus, M. mucogenicum, M. chelonae and M. fortuitum, implicated in healthcare-associated infections, are often isolated from potable water supplies as part of the microbial flora. To understa...

  11. Draft Genome Sequence of Mycobacterium wolinskyi, a Rapid-Growing Species of Nontuberculous Mycobacteria

    PubMed Central

    Perry, K. Allison; Lawsin, Adrian; Coulliette, Angela D.; Jensen, Bette; Toney, Nadege C.; Limbago, Brandi M.; Noble-Wang, Judith

    2016-01-01

    Mycobacterium wolinskyi is a nonpigmented, rapidly growing nontuberculous mycobacterium species that is associated with bacteremia, peritonitis, infections associated with implants/prostheses, and skin and soft tissue infections often following surgical procedures in humans. Here, we report the first functionally annotated draft genome sequence of M. wolinskyi CDC_01. PMID:26988052

  12. Rapid Reconnection and Field Line Topology

    NASA Astrophysics Data System (ADS)

    Parker, E. N.; Rappazzo, A. F.

    Rapid reconnection of magnetic fields arises where the magnetic stresses push the plasma and field so as to increase the field gradient without limit. The intent of the present writing is to show the larger topological context in which this commonly occurs. Consider an interlaced field line topology as commonly occurs in the bipolar magnetic regions on the Sun. A simple model is constructed starting with a strong uniform magnetic field B 0 in the z-direction through an infinitely conducting fluid from the end plate z = 0 to z = L with the field lines tied at both end plates. Field line interlacing is introduced by smooth continuous random turbulent mixing of the footpoints at the end plates. This configuration is well suited to be modeled with the reduced magnetohydrodynamic (MHD) equations, with the equilibria given by the solutions of the 2D vorticity equation in this case. The set of continuous solutions to the "vorticity" equation have greatly restricted topologies, so almost all interlaced field topologies do not have continuous solutions. That infinite set represents the "weak" solutions of the vorticity equation, wherein there are surfaces of tangential discontinuity (current sheets) in the field dividing regions of smooth continuous field. It follows then that current sheets are to be found throughout interlaced fields, providing potential sites for rapid reconnection. That is to say, rapid reconnection and nanoflaring are expected throughout the bipolar magnetic fields in the solar corona, providing substantial heating to the ambient gas. Numerical simulations provide a direct illustration of the process, showing that current sheets thin on fast ideal Alfvén timescales down to the smallest numerically resolved scales. The asymmetric structure of the equilibria and the interlacing threshold for the onset of singularities are discussed. Current sheet formation and dynamics are further analyzed with dissipative and ideal numerical simulations.

  13. Topological Growing of Laughlin States in Synthetic Gauge Fields

    NASA Astrophysics Data System (ADS)

    Grusdt, Fabian; Letscher, Fabian; Hafezi, Mohammad; Fleischhauer, Michael

    2014-10-01

    We suggest a scheme for the preparation of highly correlated Laughlin states in the presence of synthetic gauge fields, realizing an analogue of the fractional quantum Hall effect in photonic or atomic systems of interacting bosons. It is based on the idea of growing such states by adding weakly interacting composite fermions along with magnetic flux quanta one by one. The topologically protected Thouless pump ("Laughlin's argument") is used to create two localized flux quanta and the resulting hole excitation is subsequently filled by a single boson, which, together with one of the flux quanta, forms a composite fermion. Using our protocol, filling 1/2 Laughlin states can be grown with particle number N increasing linearly in time and strongly suppressed number fluctuations. To demonstrate the feasibility of our scheme, we consider two-dimensional lattices subject to effective magnetic fields and strong on-site interactions. We present numerical simulations of small lattice systems and also discuss the influence of losses.

  14. Pollutants dynamics in a rice field catchment during storms in the growing and non-growing seasons

    NASA Astrophysics Data System (ADS)

    Kim, J. S.; Lee, J. B.; Cho, J. P.

    2012-04-01

    We compared the behavior of pollutants such as total nitrogen (TN), total phosphorous (TP), chemical oxygen demand (COD) and suspended solid (SS) in runoff from a Korean rice field catchment during storm events between growing and non-growing seasons. The study catchment has a size of 21.9 ha and its water source is river. Fertilizers were applied at rates of 91 N kg ha-1 and 18 P kg ha-1 as basal and top dressings. The rice fields are shallowly (3-10 cm) flooded during most of the growing season, and therefore runoff water always flows during the growing season but flows only during storms in the non-growing season. TN concentrations in runoff water decreased with discharge irrespective of the season, whereas TP, COD and SS concentrations increased with discharge. Event mean concentrations (EMCs) of pollutants in runoff water from the catchment during the non-growing season were 2 to 3 times higher than those during the growing season. This may be because flooded water in the growing season greatly reduces transport of pollutant associated with soil erosion. The results suggest that the rice field catchment may act as a sink of some pollutants during growing season but as a source of all pollutants during non-growing season. .

  15. Topological growing of Laughlin states in synthetic gauge fields.

    PubMed

    Grusdt, Fabian; Letscher, Fabian; Hafezi, Mohammad; Fleischhauer, Michael

    2014-10-10

    We suggest a scheme for the preparation of highly correlated Laughlin states in the presence of synthetic gauge fields, realizing an analogue of the fractional quantum Hall effect in photonic or atomic systems of interacting bosons. It is based on the idea of growing such states by adding weakly interacting composite fermions along with magnetic flux quanta one by one. The topologically protected Thouless pump ("Laughlin's argument") is used to create two localized flux quanta and the resulting hole excitation is subsequently filled by a single boson, which, together with one of the flux quanta, forms a composite fermion. Using our protocol, filling 1/2 Laughlin states can be grown with particle number N increasing linearly in time and strongly suppressed number fluctuations. To demonstrate the feasibility of our scheme, we consider two-dimensional lattices subject to effective magnetic fields and strong on-site interactions. We present numerical simulations of small lattice systems and also discuss the influence of losses. PMID:25375718

  16. Pulmonary infection with rapidly growing mycobacteria in a singer with achalasia: a case report.

    PubMed

    Cramer, J P; Sudeck, H; Burchard, G D

    2007-04-01

    We report the case of a 37-year-old male patient with prolonged pneumonia and achalasia. Culture and molecular genetic typing identified Mycobacterium abscessus as causative agent. Treatment with clarithromycin and minocycline over 8 months gradually resolved the infection. Rapidly growing, non-obligate pathogenic mycobacteria are widespread in the environment. Several cases of pulmonary infections with these mycobacteria in patients with achalasia have been reported, suggesting a causative association. This is the first report of a case with isolation of M. abscessus in this context. PMID:17316814

  17. Biofilm development by potentially pathogenic non-pigmented rapidly growing mycobacteria

    PubMed Central

    Esteban, Jaime; Martín-de-Hijas, Nieves Z; Kinnari, Teemu J; Ayala, Guillermo; Fernández-Roblas, Ricardo; Gadea, Ignacio

    2008-01-01

    Background A study to evaluate the biofilm-development ability in three different media (Middlebrook 7H9, sterile tap water and PBS-5% glucose) was performed with 19 collection strains from 15 different species on non-pigmented rapidly growing mycobacteria (NPRGM). A microtiter plate assay was developed to evaluate the percentage of covered surface of the microtiter plate wells in different days from day 1 to day 69. Results All strains were able to develop biofilm in all the tested media. Middlebrook 7H9 showed the fastest growth, followed by sterile tap water and PBS-5% glucose. A sigmoid growth curve was detected in all the strains both in Middlebrook 7H9 and in sterile tap water. A difference could be detected for Mycobacterium abscessus in tap water, where it showed faster growth than all the other strains. Conclusion Biofilm development seems to be a property of all the species of NPRGM and it depends on the nutrients present in the medium. The microtiter plate assay described here is a useful tool to evaluate differences in biofilm development among the different species of rapidly growing mycobacteria. PMID:18928544

  18. Overweight, obesity, and inactivity and urban design in rapidly growing Chinese cities.

    PubMed

    Day, Kristen; Alfonzo, Mariela; Chen, Yufei; Guo, Zhan; Lee, Karen K

    2013-05-01

    China faces rising rates of overweight, obesity, and physical inactivity among its citizens. Risk is highest in China's rapidly growing cities and urban populations. Current urban development practices and policies in China heighten this risk. These include policies that support decentralization in land use planning; practices of neighborhood gating; and policies and practices tied to motor vehicle travel, transit planning, and bicycle and pedestrian infrastructure. In this paper, we review cultural, political, and economic issues that influence overweight, obesity, and inactivity in China. We examine key urban planning features and policies that shape urban environments that may compromise physical activity as part of everyday life, including walking and bicycling. We review the empirical research to identify planning and design strategies that support physical activity in other high-density cities in developing and developed countries. Finally, we identify successful strategies to increase physical activity in another growing, high-density city - New York City - to suggest strategies that may have relevance for rapidly urbanizing Chinese cities. PMID:23416231

  19. Structural analysis of biofilm formation by rapidly and slowly growing nontuberculous mycobacteria.

    PubMed

    Williams, Margaret M; Yakrus, Mitchell A; Arduino, Matthew J; Cooksey, Robert C; Crane, Christina B; Banerjee, Shailen N; Hilborn, Elizabeth D; Donlan, Rodney M

    2009-04-01

    Mycobacterium avium complex (MAC) and rapidly growing mycobacteria (RGM) such as M. abscessus, M. mucogenicum, M. chelonae, and M. fortuitum, implicated in health care-associated infections, are often isolated from potable water supplies as part of the microbial flora. To understand factors that influence growth in their environmental source, clinical RGM and slowly growing MAC isolates were grown as biofilm in a laboratory batch system. High and low nutrient levels were compared, as well as stainless steel and polycarbonate surfaces. Biofilm growth was measured after 72 h of incubation by enumeration of bacteria from disrupted biofilms and by direct quantitative image analysis of biofilm microcolony structure. RGM biofilm development was influenced more by nutrient level than by substrate material, though both affected biofilm growth for most of the isolates tested. Microcolony structure revealed that RGM develop several different biofilm structures under high-nutrient growth conditions, including pillars of various shapes (M. abscessus and M. fortuitum) and extensive cording (M. abscessus and M. chelonae). Although it is a slowly growing species in the laboratory, a clinical isolate of M. avium developed more culturable biofilm in potable water in 72 h than any of the 10 RGM examined. This indicates that M. avium is better adapted for growth in potable water systems than in laboratory incubation conditions and suggests some advantage that MAC has over RGM in low-nutrient environments. PMID:19201956

  20. Airborne observations of electric fields around growing and decaying cumulus clouds

    NASA Technical Reports Server (NTRS)

    Giori, K. L.; Nanevicz, J. E.

    1991-01-01

    Airborne electric field data were gathered in an atmospheric electrification study near Cape Canaveral, FL. A Learjet 36A was instrumented with eight electric field meters (mills) and five different particle probes. The local electric field enhancements at each field mill site were determined under lab conditions and verified using in-flight data. The overdetermined system of eight equations (one for each field mill) was solved using a weighted least squares algorithm to compute the magnitude and direction of the ambient electric field. The signal processing system allowed the measured data to be expressed in terms of earth coordinates, regardless of the attitude of the aircraft. Thus, it was possible to take maximum advantage of the Learjet's speed and maneuverability in studying the electric field structure in the vicinity of the clouds. Data gathered while circling just outside the boundary of a growing cumulus cloud show a nonsymmetric pattern of electric field strength. Field intensity grew rapidly over a period of less than 10 minutes. The observed direction of the ambient electric field vector can be explained by an ascending motion of the charge centers of a classic tripole model of a thunderstorm.

  1. Nuclear oncology, a fast growing field of nuclear medicine

    NASA Astrophysics Data System (ADS)

    Olivier, Pierre

    2004-07-01

    Nuclear Medicine in oncology has been for a long time synonymous with bone scintigraphy, the first ever whole body imaging modality, and with treatment of thyroid cancer with iodine-131. More recently, somatostatin receptor scintigraphy (SRS) using peptides such as 111In-labelled octreotide became a reference imaging method in the detection and staging of neuroendocrine tumors while 131I- and 123I-MIBG remain the tracers of reference for pheochromocytomas and neuroblastomas. Lymphoscintigraphic imaging based on peritumoral injection of 99mTc-labelled colloids supports, in combination with per operative detection, the procedure of sentinel node identification in breast cancers and melanomas. Positron Emission Tomography (PET) is currently experiencing a considerable growth in oncology based on the use of 18F-FDG (fluorodeoxyglucose), a very sensitive, although non-specific, tumor tracer. Development of instrumentation is crucial in this expansion of PET imaging with new crystals being more sensitive and hybrid imagers that permit to reduce the acquisition time and offer fused PET-CT images. Current developments in therapy can be classified into three categories. Radioimmunotherapy (RIT) based on monoclonal antibodies (or fragments) labelled with beta-emitters. This technique has recently made its entrance in clinical practice with a 90Y-labelled anti-CD20 antibody ( 90Y-ibritumomab tiuxetan (Zevalin ®)) approved in US for the treatment of some subtypes of non-Hodgkin's lymphoma. Radionuclide-bone pain palliation has experienced developments with 153Sm-EDTMP, 186Re-HEDP or 89Sr, efficient in patients with widespread disease. Last, the same peptides, as those used in SRS, are being developed for therapy, labelled with 90Y, 111In or 177Lu in patients who failed to respond to other treatments. Overall, nuclear oncology is currently a fast growing field thanks to the combined developments of radiopharmaceuticals and instrumentation.

  2. Rapid field application of hydraulic tomography

    NASA Astrophysics Data System (ADS)

    Brauchler, R.; Hu, R.; Hu, L.; Parras, S. J.; Bayer, P.; Dietrich, P.; Ptak, T.

    2013-12-01

    The motivation of this field study is the need for investigation methods that are both rapid and well suited for resolving the spatial distribution of hydraulic properties in aquifers. Therefore, we propose a field strategy for hydraulic tomography that can be analyzed and performed with a similar speed as direct-push profiling. The field implementation is designed in a way that a suite of tomographic measurements can be recorded in one day. We utilize direct-push technology for the well installation and limit the pumping time to 300 s, which permits us to record 30 transient pressure response curves between two wells in one working day. For the inversion, we applied a computationally efficient inversion scheme which is based on the transformation of the ground water flow equation into a form of the eikonal equation. By exploiting the early part of a transient hydraulic pressure response recorded during cross-well tests only short-term pumping tests are required. The main advantages of the inversion scheme are the low computational requirements of eikonal solvers and that no information about the hydraulic boundaries is needed. The short pumping time in combination with the straightforward inversion technique allows for the reconstruction of hydraulic conductivity and specific storage distributions already in the field, which is particularly useful for an adaptive site investigation approach. Additionally, direct-push injection logging is performed at the field site, and the obtained field data is utilized for successful validation of the hydraulic tomograms. We also compare both methods with respect to the necessary requirements, time demand in the field and complexity of interpretation.

  3. The CUE Domain of Cue1 Aligns Growing Ubiquitin Chains with Ubc7 for Rapid Elongation.

    PubMed

    von Delbrück, Maximilian; Kniss, Andreas; Rogov, Vladimir V; Pluska, Lukas; Bagola, Katrin; Löhr, Frank; Güntert, Peter; Sommer, Thomas; Dötsch, Volker

    2016-06-16

    Ubiquitin conjugation is an essential process modulating protein function in eukaryotic cells. Surprisingly, little is known about how the progressive assembly of ubiquitin chains is managed by the responsible enzymes. Only recently has ubiquitin binding activity emerged as an important factor in chain formation. The Ubc7 activator Cue1 carries a ubiquitin binding CUE domain that substantially stimulates K48-linked polyubiquitination mediated by Ubc7. Our results from NMR-based analysis and in vitro ubiquitination reactions point out that two parameters accelerate ubiquitin chain assembly: the increasing number of CUE binding sites and the position of CUE binding within a growing chain. In particular, interactions with a ubiquitin moiety adjacent to the acceptor ubiquitin facilitate chain elongation. These data indicate a mechanism for ubiquitin binding in which Cue1 positions Ubc7 and the distal acceptor ubiquitin for rapid polyubiquitination. Disrupting this mechanism results in dysfunction of the ERAD pathway by a delayed turnover of substrates. PMID:27264873

  4. Patient Report and Review of Rapidly Growing Mycobacterial Infection after Cardiac Device Implantation

    PubMed Central

    Hirsh, David S.; Goswami, Neela D.

    2016-01-01

    Mycobacterial infections resulting from cardiac implantable electronic devices are rare, but as more devices are implanted, these organisms are increasingly emerging as causes of early-onset infections. We report a patient with an implantable cardioverter-defibrillator pocket and associated bloodstream infection caused by an organism of the Mycobacterium fortuitum group, and we review the literature regarding mycobacterial infections resulting from cardiac device implantations. Thirty-two such infections have been previously described; most (70%) were caused by rapidly growing species, of which M. fortuitum group species were predominant. When managing such infections, clinicians should consider the potential need for extended incubation of routine cultures or dedicated mycobacterial cultures for accurate diagnosis; combination antimicrobial drug therapy, even for isolates that appear to be macrolide susceptible, because of the potential for inducible resistance to this drug class; and the arrhythmogenicity of the antimicrobial drugs traditionally recommended for infections caused by these organisms. PMID:26890060

  5. Giant nodular pseudoangiomatous stromal hyperplasia (PASH) of the breast presenting as a rapidly growing tumour.

    PubMed

    Mezzabotta, Maurizio; Riccardi, Silvia; Bonvini, Simona; Declich, Paolo; Tavani, Enrico; Morandi, Eugenio

    2009-01-01

    Pseudoangiomatous stromal hyperplasia (PASH) is often a microscopic incidental finding in breast biopsies performed for benign or malignant diseases. In rare cases, it presents as a localised breast mass. Since Vuitch et al first described this condition in 1986, only 109 cases of PASH presenting as a palpable or mammographically detectable mass have been documented. PASH is characterised by a dense, collagenous proliferation of mammary stroma, forming inter-anastomosing capillary-like spaces. It is important to distinguish this benign lesion from a low-grade angiosarcoma. Here we describe the clinical, radiological and histological features of a very unusual case of PASH that presented as a rapidly growing breast lesion in a 37-year old woman. PMID:19694241

  6. Night Temperature has a Minimal Effect on Respiration and Growth in Rapidly Growing Plants

    PubMed Central

    FRANTZ, JONATHAN M.; COMETTI, NILTON N.; BUGBEE, BRUCE

    2004-01-01

    • Background and Aims Carbon gain depends on efficient photosynthesis and adequate respiration. The effect of temperature on photosynthetic efficiency is well understood. In contrast, the temperature response of respiration is based almost entirely on short‐term (hours) measurements in mature organisms to develop Q10 values for maintenance and whole‐plant respiration. These Q10 values are then used to extrapolate across whole life cycles to predict the influence of temperature on plant growth. • Methods In this study, night temperature in young, rapidly growing plant communities was altered from 17 to 34 °C for up to 20 d. Day temperature was maintained at 25 °C. CO2 gas‐exchange was continuously monitored in ten separate chambers to quantify the effect of night‐temperature on respiration, photosynthesis and the efficiency of carbon gain (carbon use efficiency). • Key Results Respiration increased only 20–46 % for each 10 °C rise in temperature (total respiratory Q10 of between 1·2 to about 1·5). This change resulted in only a 2–12 % change in carbon use efficiency, and there was no effect on cumulative carbon gain or dry mass. No acclimation of respiration was observed after 20 d of treatment. • Conclusions These findings indicate that whole‐plant respiration of rapidly growing plants has a small sensitivity to temperature, and that the sensitivity does not change among the species tested, even after 20 d of treatment. Finally, the results support respiration models that separate respiration into growth and maintenance components. PMID:15159217

  7. A rapid and sensitive fluorometric microassay for determining cell mediated cytotoxicity to adherent growing cell lines.

    PubMed

    Krüger-Krasagakes, S; Garbe, C; Kossman, P; Orfanos, C E

    1992-11-25

    In order to measure cell mediated cytotoxicity to adherent growing cell lines in vitro more rapidly and conveniently, a fluorometric microassay was developed and results were compared with those obtained by the 51Cr release assay. The fluorometric method is based on the hydrolysis of the fluorochrome 4-methylumbelliferyl heptanoate (MUH) by intracellular esterases of viable cells. Melanoma cell monolayers were incubated with lymphokine activated killer (LAK) cells for 4 h at various effector: target (E:T) cell ratios (E:T = 16, 8, 4, 2:1). Thereafter surviving adherent melanoma cells were stained with MUH for 30 min and fluorescence was measured directly in a 96 well plate reader. For the calculation of LAK cell cytotoxicity fluorescence values were corrected for the number of nonspecifically detached tumor cells during the washes and the number of nonspecifically adherent LAK cells. Using identical target and effector cell preparations both assays showed a nearly proportional increase of percentage cytotoxicity with rising numbers of lymphocytes. Compared with the 51Cr release assay, however, higher cytotoxicity values were obtained with the fluorometric MUH microassay: 57% with MUH versus 26% with 51Cr and 39% versus 14% for cell lines StML-11 and SKMel-28, respectively (E:T ratio = 16:1). The higher cytotoxicity rates obtained with the fluorometric MUH microassay were not due to the additional 30 min staining with MUH or due to nonspecific hydrolysis of MUH by extracellular esterases released from damaged cells, as could be shown by a series of experiments. In conclusion, a simple and rapid fluorometric microassay has been developed showing reliable reproducibility and a higher sensitivity compared with the 51Cr release assay for the determination of cellular cytotoxicity to adherent growing cell lines, avoiding hazardous radioactive labels. PMID:1431156

  8. Rapid urbanization and the growing threat of violence and conflict: a 21st century crisis.

    PubMed

    Patel, Ronak B; Burkle, Frederick M

    2012-04-01

    As the global population is concentrated into complex environments, rapid urbanization increases the threat of conflict and insecurity. Many fast-growing cities create conditions of significant disparities in standards of living, which set up a natural environment for conflict over resources. As urban slums become a haven for criminal elements, youth gangs, and the arms trade, they also create insecurity for much of the population. Specific populations, such as women, migrants, and refugees, bear the brunt of this lack of security, with significant impacts on their livelihoods, health, and access to basic services. This lack of security and violence also has great costs to the general population, both economic and social. Cities have increasingly become the battlefield of recent conflicts as they serve as the seats of power and gateways to resources. International agencies, non-governmental organizations, and policy-makers must act to stem this tide of growing urban insecurity. Protecting urban populations and preventing future conflict will require better urban planning, investment in livelihood programs for youth, cooperation with local communities, enhanced policing, and strengthening the capacity of judicial systems. PMID:22591767

  9. Cathepsin K inhibitors increase distal femoral bone mineral density in rapidly growing rabbits

    PubMed Central

    2013-01-01

    Background Selective and reversible inhibitors of human Cathepsin K (CatK), including odanacatib (ODN), have been developed as potential therapeutics for the treatment of osteoporosis. Inhibitors of human CatK show significantly less potency for the rodent enzymes compared with that for the human or rabbit enzymes; thus the Schenk model in growing rabbit was developed as a screening assay for the in vivo activity of CatK inhibitors in blocking bone resorption. Methods In this study, the efficacy of the selective inhibitors L-833905, L-006235, L-873724, and L-1037536 (ODN) of human CatK in the rapidly growing rabbit ‘Schenk’ model (age seven weeks) was compared to vehicle, using the bisphosphonate, alendronate (ALN), as a positive control, to assess inhibition of bone resorption. An enzyme inhibition assay (EIA) and an in vitro bone resorption assay using rabbit osteoclasts on bovine cortical bone slices were performed to evaluate the potency of these CatK inhibitors. Bone mineral density of the distal femur (DFBMD) was measured after ten days of treatment using ex vivo DXA densitometry. Results Results of the EIA using rabbit CatK and the rabbit bone resorption assay showed that three of the four compounds (L-006235, L-873724, and ODN) had similar potencies in the reduction of collagen degradation. L-833905 appeared to be a weaker inhibitor of CatK. Taking into account the respective in vitro potencies and pharmacokinetic profiles via oral administration, the efficacy of these four CatK inhibitors was demonstrated in a dose-related manner in the growing rabbit. Significant increases in DFBMD in animals dosed with the CatK inhibitors compared to vehicle were seen. Conclusions Efficacy of the CatK inhibitors in the Schenk rabbit correlated well with that in the in vitro rabbit bone resorption assay and in the ovariectomized rabbit model as previously published. Hence, these studies validated the rabbit Schenk assay as a rapid and reliable in vivo model for

  10. Rapidly growing tropical trees mobilize remarkable amounts of nitrogen, in ways that differ surprisingly among species

    PubMed Central

    Russell, Ann E.; Raich, James W.

    2012-01-01

    Fast-growing forests such as tropical secondary forests can accumulate large amounts of carbon (C), and thereby play an important role in the atmospheric CO2 balance. Because nitrogen (N) cycling is inextricably linked with C cycling, the question becomes: Where does the N come from to match high rates of C accumulation? In unique experimental 16-y-old plantations established in abandoned pasture in lowland Costa Rica, we used a mass-balance approach to quantify N accumulation in vegetation, identify sources of N, and evaluate differences among tree species in N cycling. The replicated design contained four broad-leaved evergreen tree species growing under similar environmental conditions. Nitrogen uptake was rapid, reaching 409 (±30) kg⋅ha−1⋅y−1, double the rate reported from a Puerto Rican forest and greater than four times that observed at Hubbard Brook Forest (New Hampshire, USA). Nitrogen amassed in vegetation was 874 (±176) kg⋅ha−1, whereas net losses of soil N (0–100 cm) varied from 217 (±146) to 3,354 (±915) kg⋅ha−1 (P = 0.018) over 16 y. Soil C:N, δ13C values, and N budgets indicated that soil was the main source of biomass N. In Vochysia guatemalensis, however, N fixation contributed >60 kg⋅ha−1⋅y−1. All species apparently promoted soil N turnover, such that the soil N mean residence time was 32–54 y, an order of magnitude lower than the global mean. High rates of N uptake were associated with substantial N losses in three of the species, in which an average of 1.6 g N was lost for every gram of N accumulated in biomass. PMID:22689942

  11. Rapidly growing giant cell tumor of bone in a skeletally immature girl.

    PubMed

    Akaike, Gensuke; Ueno, Teruko; Matsumoto, Seiichi; Motoi, Noriko; Matsueda, Kiyoshi

    2016-04-01

    Giant cell tumor of bone (GCTB) in skeletally immature patients is rare, and little is known regarding how fast GCTB can grow. We report a case of a 10-year-old skeletally immature girl with pathologically proven GCTB with obvious growth plate invasion that showed surprisingly rapid growth over only 14 days. A radiograph of the left knee revealed well-circumscribed, geographic bone destruction at the distal metaphysis of the femur with a focal cortical defect, suggesting a pathologic fracture. No abnormal mineralization or periosteal reaction was seen. A CT without contrast and an MRI demonstrated a homogeneous lesion with cortical disruption posteriorly and laterally with a slight soft tissue extension. Biopsy showed numerous multinucleated giant cells and spindle-shaped mononuclear cells without any sign of malignancy, suggesting GCTB. However, rapid lesion enlargement and destruction of the surrounding cortex were noted 14 days after biopsy. Considering the amount of bone destruction, traditional treatment of curettage and bone cement would not suffice to sustain structural strength. In addition, considering the patient's age, the tumor location, and the aggressive course, a malignant tumor, especially a giant cell-rich osteosarcoma, could not be excluded. Therefore, en bloc resection, including the growth plate and prosthetic replacement, were performed. Confirmation of GCTB was made from a pathologic evaluation, and a breach to the growth plate was identified. Since very little inflammatory reaction, degenerative change, or aneurysmal, bone, cyst-like change was found, the growth plate invasion was confirmed as due to GCTB extension, not due to the preoperative biopsy. PMID:26585568

  12. The spatial biology of transcription and translation in rapidly growing Escherichia coli

    PubMed Central

    Bakshi, Somenath; Choi, Heejun; Weisshaar, James C.

    2015-01-01

    Single-molecule fluorescence provides high resolution spatial distributions of ribosomes and RNA polymerase (RNAP) in live, rapidly growing Escherichia coli. Ribosomes are more strongly segregated from the nucleoids (chromosomal DNA) than previous widefield fluorescence studies suggested. While most transcription may be co-translational, the evidence indicates that most translation occurs on free mRNA copies that have diffused from the nucleoids to a ribosome-rich region. Analysis of time-resolved images of the nucleoid spatial distribution after treatment with the transcription-halting drug rifampicin and the translation-halting drug chloramphenicol shows that both drugs cause nucleoid contraction on the 0–3 min timescale. This is consistent with the transertion hypothesis. We suggest that the longer-term (20–30 min) nucleoid expansion after Rif treatment arises from conversion of 70S-polysomes to 30S and 50S subunits, which readily penetrate the nucleoids. Monte Carlo simulations of a polymer bead model built to mimic the chromosomal DNA and ribosomes (either 70S-polysomes or 30S and 50S subunits) explain spatial segregation or mixing of ribosomes and nucleoids in terms of excluded volume and entropic effects alone. A comprehensive model of the transcription-translation-transertion system incorporates this new information about the spatial organization of the E. coli cytoplasm. We propose that transertion, which radially expands the nucleoids, is essential for recycling of 30S and 50S subunits from ribosome-rich regions back into the nucleoids. There they initiate co-transcriptional translation, which is an important mechanism for maintaining RNAP forward progress and protecting the nascent mRNA chain. Segregation of 70S-polysomes from the nucleoid may facilitate rapid growth by shortening the search time for ribosomes to find free mRNA concentrated outside the nucleoid and the search time for RNAP concentrated within the nucleoid to find transcription

  13. Drug Susceptibility Testing of 31 Antimicrobial Agents on Rapidly Growing Mycobacteria Isolates from China

    PubMed Central

    Pang, Hui; Li, Guilian; Zhao, Xiuqin; Liu, Haican; Wan, Kanglin; Yu, Ping

    2015-01-01

    Objectives. Several species of rapidly growing mycobacteria (RGM) are now recognized as human pathogens. However, limited data on effective drug treatments against these organisms exists. Here, we describe the species distribution and drug susceptibility profiles of RGM clinical isolates collected from four southern Chinese provinces from January 2005 to December 2012. Methods. Clinical isolates (73) were subjected to in vitro testing with 31 antimicrobial agents using the cation-adjusted Mueller-Hinton broth microdilution method. The isolates included 55 M. abscessus, 11 M. fortuitum, 3 M. chelonae, 2 M. neoaurum, and 2 M. septicum isolates. Results. M. abscessus (75.34%) and M. fortuitum (15.07%), the most common species, exhibited greater antibiotic resistance than the other three species. The isolates had low resistance to amikacin, linezolid, and tigecycline, and high resistance to first-line antituberculous agents, amoxicillin-clavulanic acid, rifapentine, dapsone, thioacetazone, and pasiniazid. M. abscessus and M. fortuitum were highly resistant to ofloxacin and rifabutin, respectively. The isolates showed moderate resistance to the other antimicrobial agents. Conclusions. Our results suggest that tigecycline, linezolid, clofazimine, and cefmetazole are appropriate choices for M. abscessus infections. Capreomycin, sulfamethoxazole, tigecycline, clofazimine, and cefmetazole are potentially good choices for M. fortuitum infections. Our drug susceptibility data should be useful to clinicians. PMID:26351633

  14. Clinical and taxonomic status of pathogenic nonpigmented or late-pigmenting rapidly growing mycobacteria.

    PubMed

    Brown-Elliott, Barbara A; Wallace, Richard J

    2002-10-01

    The history, taxonomy, geographic distribution, clinical disease, and therapy of the pathogenic nonpigmented or late-pigmenting rapidly growing mycobacteria (RGM) are reviewed. Community-acquired disease and health care-associated disease are highlighted for each species. The latter grouping includes health care-associated outbreaks and pseudo-outbreaks as well as sporadic disease cases. Treatment recommendations for each species and type of disease are also described. Special emphasis is on the Mycobacterium fortuitum group, including M. fortuitum, M. peregrinum, and the unnamed third biovariant complex with its recent taxonomic changes and newly recognized species (including M. septicum, M. mageritense, and proposed species M. houstonense and M. bonickei). The clinical and taxonomic status of M. chelonae, M. abscessus, and M. mucogenicum is also detailed, along with that of the closely related new species, M. immunogenum. Additionally, newly recognized species, M. wolinskyi and M. goodii, as well as M. smegmatis sensu stricto, are included in a discussion of the M. smegmatis group. Laboratory diagnosis of RGM using phenotypic methods such as biochemical testing and high-performance liquid chromatography and molecular methods of diagnosis are also discussed. The latter includes PCR-restriction fragment length polymorphism analysis, hybridization, ribotyping, and sequence analysis. Susceptibility testing and antibiotic susceptibility patterns of the RGM are also annotated, along with the current recommendations from the National Committee for Clinical Laboratory Standards (NCCLS) for mycobacterial susceptibility testing. PMID:12364376

  15. In vitro drug susceptibility of 40 international reference rapidly growing mycobacteria to 20 antimicrobial agents

    PubMed Central

    Pang, Hui; Li, Guilian; Wan, Li; Jiang, Yi; Liu, Haican; Zhao, Xiuqin; Zhao, Zhongfu; Wan, Kanglin

    2015-01-01

    Rapidly growing mycobacteria (RGM) are human pathogens that are relatively easily identified by acid-fast staining but are proving difficult to treat in the clinic. In this study, we performed susceptibility testing of 40 international reference RGM species against 20 antimicrobial agents using the cation-adjusted Mueller-Hinton (CAMH) broth microdilution based on the minimum inhibitory concentration (MIC) assay recommended by the guidelines of the Clinical and Laboratory Standards Institute (CLSI). The results demonstrated that RGM organisms were resistant to the majority of first-line antituberculous agents but not to second-line fluoroquinolones or aminoglycosides. Three drugs (amikacin, tigecycline and linezolid) displayed potent antimycobacterial activity against all tested strains. Capreomycin, levofloxacin and moxifloxacin emerged as promising candidates for the treatment of RGM infections, and cefoxitin and meropenem were active against most strains. Mycobacterium chelonae (M. chelonae), M. abscessus, M. bolletii, M. fortuitum, M. boenickei, M. conceptionense, M. pseudoshottsii, M. septicum and M. setense were the most resistant RGM species. These results provide significant insight into the treatment of RGM species and will assist optimization of clinical criteria. PMID:26629031

  16. Clinical and Taxonomic Status of Pathogenic Nonpigmented or Late-Pigmenting Rapidly Growing Mycobacteria

    PubMed Central

    Brown-Elliott, Barbara A.; Wallace, Richard J.

    2002-01-01

    The history, taxonomy, geographic distribution, clinical disease, and therapy of the pathogenic nonpigmented or late-pigmenting rapidly growing mycobacteria (RGM) are reviewed. Community-acquired disease and health care-associated disease are highlighted for each species. The latter grouping includes health care-associated outbreaks and pseudo-outbreaks as well as sporadic disease cases. Treatment recommendations for each species and type of disease are also described. Special emphasis is on the Mycobacterium fortuitum group, including M. fortuitum, M. peregrinum, and the unnamed third biovariant complex with its recent taxonomic changes and newly recognized species (including M. septicum, M. mageritense, and proposed species M. houstonense and M. bonickei). The clinical and taxonomic status of M. chelonae, M. abscessus, and M. mucogenicum is also detailed, along with that of the closely related new species, M. immunogenum. Additionally, newly recognized species, M. wolinskyi and M. goodii, as well as M. smegmatis sensu stricto, are included in a discussion of the M. smegmatis group. Laboratory diagnosis of RGM using phenotypic methods such as biochemical testing and high-performance liquid chromatography and molecular methods of diagnosis are also discussed. The latter includes PCR-restriction fragment length polymorphism analysis, hybridization, ribotyping, and sequence analysis. Susceptibility testing and antibiotic susceptibility patterns of the RGM are also annotated, along with the current recommendations from the National Committee for Clinical Laboratory Standards (NCCLS) for mycobacterial susceptibility testing. PMID:12364376

  17. Mushroom growing project at the Los Humeros, Mexico geothermal field

    SciTech Connect

    Rangel, M.E.R.

    1998-12-01

    There are several projects of direct (non-electrical) use of geothermal energy in Mexico. Personnel of the Comision Federal de Electricidad (CFE) have experience in various of these projects, like drying of timber and fruits, space heating, food processing, etc. Taking this in consideration, CFE built the Los Humeros mushroom plant using for heat source the geothermal steam from Well H-1. The main purpose of the project was to take advantage of residual geothermal energy in a food production operation and to develop the appropriate technology. In 1992, existing installations were renovated, preparing appropriate areas for pasteurization, inoculation and production. The mushroom Pleurotus ostreatus var. florida and columbinus was used. A year later, CFE proposed the construction of improved facilities for growing edible mushrooms. New materials and equipment, as well as different operation conditions, were proposed on the basis of the experience gained in the initial project. The construction and renovation activities were completed in 1994.

  18. Mercuric reductase activity and evidence of broad-spectrum mercury resistance among clinical isolates of rapidly growing mycobacteria

    SciTech Connect

    Steingrube, V.A.; Wallace, R.J. Jr.; Steele, L.C.; Pang, Y.J. )

    1991-05-01

    Resistance to mercury was evaluated in 356 rapidly growing mycobacteria belonging to eight taxonomic groups. Resistance to inorganic Hg2+ ranged from 0% among the unnamed third biovariant complex of Mycobacterium fortuitum to 83% among M. chelonae-like organisms. With cell extracts and 203Hg(NO3)2 as the substrate, mercuric reductase (HgRe) activity was demonstrable in six of eight taxonomic groups. HgRe activity was inducible and required NADPH or NADH and a thiol donor for optimai activity. Species with HgRe activity were also resistant to organomercurial compounds, including phenylmercuric acetate. Attempts at intraspecies and intragenus transfer of HgRe activity by conjugation or transformation were unsuccessful. Mercury resistance is common in rapidly growing mycobacteria and appears to function via the same inducible enzyme systems already defined in other bacterial species. This system offers potential as a strain marker for epidemiologic investigations and for studying genetic systems in rapidly growing mycobacteria.

  19. Infections Caused by Rapidly Growing Mycobacteria spp in Children and Adolescents With Cancer

    PubMed Central

    Apiwattankul, Nopporn; Flynn, Patricia M.; Hayden, Randall T.; Adderson, Elisabeth E.

    2015-01-01

    Background Rapidly growing mycobacteria (RGM) infections in pediatric oncology patients have not been completely characterized. Methods We reviewed medical records of oncology patients at St. Jude Children's Research Hospital (St. Jude) from 1990 to 2010 with RGM infections and summarized the results of previously published cases. Results Twenty-five St. Jude patients had 27 episodes of infection. Approximately half of the cases occurred in patients with hematological malignancies and in males; infections were more common in white patients. Most patients were not neutropenic or lymphopenic. The most common causative species were Mycobacterium chelonae, Mycobacterium abscessus, and Mycobacterium fortuitum. Most isolates were susceptible to amikacin and clarithromycin; all were susceptible to at least 1 of these. Treatment regimens varied considerably, particularly with respect to the duration of antimicrobial chemotherapy. Two St. Jude patients died; both had pulmonary infections. The literature search identified an additional 58 cases of infection. Localized catheter-associated infections were more common than bloodstream infections in the current series than in previous reports, and outbreaks were not recognized. Otherwise, the demographic and clinical characteristics of patients were similar. Conclusions Localized catheter-associated infections were most common in this largest reported single center experience reported to date. Pulmonary infection is uncommon in children but, as in adults, has a high mortality rate. Relatively short-term antimicrobial treatment and surgical debridement of infected tissue, if present, may be as effective for catheter-associated infections as prolonged antimicrobial use and may reduce adverse drug effects in these patients, who are vulnerable to drug-drug interactions and toxicity. PMID:26407409

  20. Susceptibility of rapidly growing mycobacteria and Nocardia isolates from cats and dogs to pradofloxacin.

    PubMed

    Govendir, M; Norris, J M; Hansen, T; Wigney, D I; Muscatello, G; Trott, D J; Malik, R

    2011-12-15

    Rapidly growing mycobacteria (RGM) and Nocardiae can cause severe or refractory infections in cats and dogs. Prolonged antibacterial therapy is required to cure these infections. As fluoroquinolones have been used in combination therapy for treating RGM infections, isolates from the Mycobacterium smegmatis cluster (n=64), Mycobacterium fortuitum cluster (n=17), and M. mageritense cluster (n=2), collected from feline and canine patients, underwent susceptibility testing to pradofloxacin. The MIC(50), MIC(90) and tentative epidemiological cut-off (ECOFF) values as determined by microbroth dilution susceptibility testing that inhibited growth of the M. smegmatis and M. fortuitum clusters were 0.063, 0.125 and ≤ 0.25; and 0.125, 0.250 and ≤ 1.0 μg/mL, respectively. E-Test results showed similar trends but MICs were lower than those for microbroth dilution. In summary, pradofloxacin demonstrated effective in vitro activity against RGM isolates. Additionally, veterinary isolates of Nocardia nova (n=18), Nocardia farcinica (n=3) and Nocardia cyriacigeorgica (n=1) underwent microbroth dilution testing to ciprofloxacin, enrofloxacin and pradofloxacin. The MIC(50) and MIC(90) of pradofloxacin, ciprofloxacin and enrofloxacin that inhibited growth of Nocardia nova isolates were 2 (4), 8 (16), 16 (32) μg/mL, respectively. The tentative ECOFF values for pradofloxacin and ciprofloxacin were 32 μg/mL and for enrofloxacin 64 μg/mL. The MIC or MIC range for the three N. farcinica isolates of pradofloxacin, ciprofloxacin and enrofloxacin were 0.25-0.5, 2 and 2 μg/mL and for the single N. cyriacigeorgica isolate were 1, 4 and 4 μg/mL, respectively. On the basis on these results, fluoroquinolones appear to have limited therapeutic potential for most Nocardia infections. PMID:21726965

  1. Susceptibility of rapidly growing mycobacteria isolated from cats and dogs, to ciprofloxacin, enrofloxacin and moxifloxacin.

    PubMed

    Govendir, M; Hansen, T; Kimble, B; Norris, J M; Baral, R M; Wigney, D I; Gottlieb, S; Malik, R

    2011-01-10

    Rapidly growing mycobacteria (RGM) cause infections in cats and dogs which require prolonged antibacterial medication for resolution. In Australia, pathogens from the Mycobacterium fortuitum and Mycobacterium smegmatis clusters are responsible for most of the RGM infections in cats and dogs. As fluoroquinolones are often recommended for treating such infections, 14 M. fortuitum isolates, 51 isolates from the M. smegmatis cluster and 2 M. mageritense isolates, collected from feline and canine patients, underwent susceptibility testing to the second generation fluoroquinolones ciprofloxacin and enrofloxacin and the newer generation fluoroquinolone moxifloxacin. Using microbroth dilution, the MIC(90) of ciprofloxacin, enrofloxacin, and moxifloxacin that inhibited growth of M. fortuitum isolates were 0.500, 0.250 and 0.063 μg/mL respectively. For the M. smegmatis cluster isolates the corresponding MIC(90) was 0.500, 0.250 and 0.125 μg/mL respectively. E-test results showed similar trends but MICs were lower than those determined by microbroth dilution. Additionally, moxifloxacin was administered to 10 clinically normal cats (50mg per cat, once daily for 4 days). The plasma moxifloxacin concentration 2h after the last dose was determined by liquid chromatography as 2.2 ± 0.6 μg/mL. The plasma concentration at 2h:MIC(90) ratios for moxifloxacin for M. fortuitum and M. smegmatis cluster was 34.9 and 17.6 respectively which exceeded the recommended threshold of 10, indicating that moxifloxacin has good theoretical efficacy for treatment of those M. fortuitum and M. smegmatis infections in cats and dogs that have become refractory to other antibacterial drug classes. PMID:20619975

  2. Complete Genome Sequence of Mycobacterium chelonae Type Strain CCUG 47445, a Rapidly Growing Species of Nontuberculous Mycobacteria

    PubMed Central

    Jaén-Luchoro, Daniel; Salvà-Serra, Francisco; Aliaga-Lozano, Francisco; Seguí, Carolina; Busquets, Antonio; Ramírez, Antonio; Ruíz, Mikel; Gomila, Margarita; Lalucat, Jorge

    2016-01-01

    Mycobacterium chelonae strains are ubiquitous rapidly growing mycobacteria associated with skin and soft tissue infections, cellulitis, abscesses, osteomyelitis, catheter infections, disseminated diseases, and postsurgical infections after implants with prostheses, transplants, and even hemodialysis procedures. Here, we report the complete genome sequence of M. chelonae type strain CCUG 47445. PMID:27284158

  3. Complete Genome Sequence of Mycobacterium chelonae Type Strain CCUG 47445, a Rapidly Growing Species of Nontuberculous Mycobacteria.

    PubMed

    Jaén-Luchoro, Daniel; Salvà-Serra, Francisco; Aliaga-Lozano, Francisco; Seguí, Carolina; Busquets, Antonio; Ramírez, Antonio; Ruíz, Mikel; Gomila, Margarita; Lalucat, Jorge; Bennasar-Figueras, Antoni

    2016-01-01

    Mycobacterium chelonae strains are ubiquitous rapidly growing mycobacteria associated with skin and soft tissue infections, cellulitis, abscesses, osteomyelitis, catheter infections, disseminated diseases, and postsurgical infections after implants with prostheses, transplants, and even hemodialysis procedures. Here, we report the complete genome sequence of M. chelonae type strain CCUG 47445. PMID:27284158

  4. Rapidly Growing Brtl/+ Mouse Model of Osteogenesis Imperfecta Improves Bone Mass and Strength with Sclerostin Antibody Treatment

    PubMed Central

    Sinder, Benjamin P.; Salemi, Joseph D.; Ominsky, Michael S.; Caird, Michelle S.; Marini, Joan C.; Kozloff, Kenneth M.

    2014-01-01

    Osteogenesis imperfecta (OI) is a heritable collagen-related bone dysplasia, characterized by brittle bones with increased fracture risk that presents most severely in children. Anti-resorptive bisphosphonates are frequently used to treat pediatric OI and controlled clinical trials have shown bisphosphonate therapy improves vertebral outcomes but has little benefit on long bone fracture rate. New treatments which increase bone mass throughout the pediatric OI skeleton would be beneficial. Sclerostin antibody (Scl-Ab) is a potential candidate anabolic therapy for pediatric OI and functions by stimulating osteoblastic bone formation via the canonical wnt signaling pathway. To explore the effect of Scl-Ab on the rapidly growing OI skeleton, we treated rapidly growing 3 week old Brtl/+ mice, harboring a typical heterozygous OI-causing Gly->Cys substitution on col1a1, for 5 weeks with Scl-Ab. Scl-Ab had anabolic effects in Brtl/+ and led to new cortical bone formation and increased cortical bone mass. This anabolic action resulted in improved mechanical strength to WT Veh levels without altering the underlying brittle nature of the material. While Scl-Ab was anabolic in trabecular bone of the distal femur in both genotypes, the effect was less strong in these rapidly growing Brtl/+ mice compared to WT. In conclusion, Scl-Ab was able to stimulate bone formation in a rapidly growing Brtl/+ murine model of OI, and represents a potential new therapy to improve bone mass and reduce fracture risk in pediatric OI. PMID:25445450

  5. Cancer chemoprevention: a rapidly evolving field

    PubMed Central

    Steward, W P; Brown, K

    2013-01-01

    Cancer chemoprevention involves the chronic administration of a synthetic, natural or biological agent to reduce or delay the occurrence of malignancy. The potential value of this approach has been demonstrated with trials in breast, prostate and colon cancer. The paradigm for developing new chemopreventive agents has changed markedly in the last decade and now involves extensive preclinical mechanistic evaluation of agents before clinical trials are instituted and a focus on defining biomarkers of activity that can be used as early predictors of efficacy. This review will summarise the current status of the field of chemoprevention and highlight potential new developments. PMID:23736035

  6. Rapid alignment of velocity and magnetic field in magnetohydrodynamic turbulence.

    PubMed

    Matthaeus, W H; Pouquet, A; Mininni, P D; Dmitruk, P; Breech, B

    2008-02-29

    We show that local directional alignment of the velocity and magnetic field fluctuations occurs rapidly in magnetohydrodynamics for a variety of parameters and is seen both in direct numerical simulations and in solar wind data. The phenomenon is due to an alignment between magnetic field and gradients of either pressure or kinetic energy, and is similar to alignment of velocity and vorticity in Navier-Stokes turbulence. This rapid and robust relaxation process leads to a local weakening of nonlinear terms. PMID:18352632

  7. Rapidly growing gastric metastasis of Merkel cell carcinoma, an unusual cause of melena.

    PubMed

    Hulstaert, Eva; Smith, Vanessa; Mielants, Herman; Van Praet, Louis; De Kock, Joris; Lambrecht, Valérie; Rasschaert, Gertjan; Van Belle, Simon

    2016-08-01

    Merkel cell carcinoma (MCC) is an uncommon, highly aggressive neuroendocrine skin carcinoma that has a tendency for local recurrence and metastatic disease. We report a rare case of recurrent melena in a 77-year-old Caucasian male. Three years earlier, the patient had undergone a radical resection of a para-umbilical MCC. A repeat esophagogastroduodenoscopy proved necessary to identify rapidly proliferating gastric metastasis of MCC as the cause of bleeding. PMID:27075789

  8. Evaluation of transit systems for a rapidly growing city in a developing country

    SciTech Connect

    Odunmbaku, A.O.

    1988-01-01

    This study analyzes trends and policies regarding developments of public and private transport in large cities of developing countries. The importance of public transport is extremely great because of their large low-income populations. It is found that improved public transport is the basic component of any solution for improvement of mobility and reduction of congestion and chaotic traffic conditions. Most cities cannot afford to build a road network required to accommodate unrestrained travel by private automobiles. Considerable economies and improved services can be achieved by better organization of present buses and jitneys, but the modes cannot by themselves provide either required high capacities or improved levels of service in major, heavily travelled corridors in large cities of developing countries. Instead of simply transplanting standard rapid-transit systems from developed countries, developing countries must select their systems with a careful analysis of their specific physical, economic and social conditions. A comprehensive methodology for selection of transit modes is developed with special attention to the needs of these countries. In many cases, light-rail transit can achieve performance close to that of rapid transit at a lower cost.

  9. [Stent graft for rapidly growing thoracic mycotic aneurysm in a patient with advanced lung cancer].

    PubMed

    Ikeuchi, Masaki; Ando, Makoto; Hisano, Kumi; Nakamura, Ryo; Urabe, Yoshitoshi; Uchida, Takayuki

    2015-02-01

    We report a compromised patient with mycotic aneurysm, who was successfully treated by urgent placement of a stent graft. A man in his seventies was admitted to our hospital with relapsing high fever and back pain during chemotherapy for advanced squamous cell carcinoma of the lung. Contrast CT demonstrated a saccular aneurysm of the thoracic aorta and left pleural effusion. Blood cultures were positive for Escherichia coli producing extended spectrum beta-lactamase (ESBL). Therefore, thoracic mycotic aneurysm was diagnosed. Because of rapid growth on consecutive examinations, absolute bed rest was required. Therefore, we performed antibiotic therapy combined with stent graft placement, which achieved complete exclusion of the aneurysm. He was discharged in an ambulatory state, and his quality of life remained good at home until just before death from terminal state of the cancer. PMID:26021128

  10. Relative in vitro growth rates of duckweeds (Lemnaceae) - the most rapidly growing higher plants.

    PubMed

    Ziegler, P; Adelmann, K; Zimmer, S; Schmidt, C; Appenroth, K-J

    2015-01-01

    Relative growth rates (RGR), doubling times (DT) and relative weekly yields (RY) of 39 clones (ecotypes) from 13 species representing all five genera of duckweeds were determined under standardised cultivation conditions. RGR ranged overall from 0.153 to 0.519 day(-1) , DT from 1.34 to 4.54 days and RY from 2.9 to 37.8 week(-1) . The RGR and RY data can be compared directly to other published findings to only a limited extent on account of missing clonal designations for and limited accessibility to previously investigated clones, as well as the use of different data denominators. However, they are consistent with the published results of other comparative duckweed studies of similar scope in showing that RGR does not vary primarily at the level of the genus or species, but rather reflects the adaptation of individual clones to specific local conditions. The RGR data support the widely held assumption that duckweeds can grow faster than other higher plants and that they can thus surpass land-based agricultural crops in productivity. Duckweeds are highly promising for the production of biomass for nutrition and energy, but extensive clonal comparison will be required to identify the most suitable isolates for this purpose. PMID:24803032

  11. Soft Tissue Infection Caused by Rapid Growing Mycobacterium following Medical Procedures: Two Case Reports and Literature Review

    PubMed Central

    Lin, Shih-Sen; Lee, Chin-Cheng

    2014-01-01

    Non-tubecrulosis mycobacterium infections were increasingly reported either pulmonary or extrapulmonary in the past decades. In Taiwan, we noticed several reports about the soft tissue infections caused by rapid growing mycobacterium such as Mycobacterium abscessus, Mycobacterium chelonae, on newspaper, magazines, or the multimedia. Most of them occurred after a plastic surgery, and medical or non-medical procedures. Here, we reported two cases of these infections following medical procedures. We also discussed common features and the clinical course of the disease, the characteristics of the infected site, and the treatment strategy. The literatures were also reviewed, and the necessity of the treatment guidelines was discussed. PMID:24882980

  12. Dietary restriction does not adversely affect bone geometry and mechanics in rapidly growing male wistar rats.

    PubMed

    Lambert, Jennifer; Lamothe, Jeremy M; Zernicke, Ronald F; Auer, Roland N; Reimer, Raylene A

    2005-02-01

    The present study assessed the effects of dietary restriction on tibial and vertebral mechanical and geometrical properties in 2-mo-old male Wistar rats. Two-month-old male Wistar rats were randomized to the ad libitum (n=8) or the 35% diet-restricted (DR) feeding group (n=9) for 5 mo. Tibiae and L6 vertebrae were dissected out for microcomputed tomography (microCT) scanning and subsequently fractured in biomechanical testing to determine geometrical and mechanical properties. The DR group had significantly lower mean tibial length, mass, area, and cross-sectional moment of inertia, as well as vertebral energy to maximal load. After adjustment for body mass, however, DR tibial mean maximal load and stiffness, and DR vertebral area, height, volume, and maximal load were significantly greater, relative to ad libitum means. No significant differences were found between the DR and ad libitum mineral ash fractions. Because the material properties of the tibiae between the two groups were not significantly different, presumably the material integrity of the bones was not adversely affected as a consequence of DR. The similar material characteristics were consistent with mineral ash fractions that were not different between the two groups. Vertebral maximal load and stiffness were not significant between the DR and ad libitum animals. Importantly, we show that a level of dietary restriction (35%) that is less severe than many studies (40%), and without micronutrient compensation does not adversely affect tibial and vertebral mechanical properties in young growing male rats when normalized for body mass. PMID:15585686

  13. Method and apparatus for rapidly growing films on substrates using pulsed supersonic jets

    DOEpatents

    Eres, Diula; Lowndes, Douglas H.

    1992-01-01

    A method and apparatus for the rapid and economical deposition of uniform and high quality films upon a substrate for subsequent use in producing electronic devices, for example. The resultant films are either epitaxial (crystalline) or amorphous depending upon the incidence rate and the temperature and structure of the substrate. The deposition is carried out in a chamber maintained at about 10.sup.-6 Torr. A gaseous source of the material for forming the deposit is injected into the deposition chamber in the form of a pulsed supersonic jet so as to obtain a high incidence rate. The supersonic jet is produced by a pulsed valve between a relatively high presure reservoir, containing the source gaseous molecules, and the deposition chamber; the valve has a small nozzle orifice (e.g., 0.1-1.0 mm diameter). The type of deposit (crystalline amorphous) is then dependent upon the temperature and structure of the substrate. Very high deposition rates are achieved, and the deposit is very smooth and of uniform thickness. Typically the deposition rate is about 100 times that of much more expensive conventional molecular beam methods for deposition, and comparable to certain expensive plasma-assisted CVD methods of the art. The high growth rate of this method results in a reduced contamination of the deposit from other elements in the environment. The method is illustrated by the deposition of epitaxial and amorphour germanium films upon GaAs substrates.

  14. Multistate US Outbreak of Rapidly Growing Mycobacterial Infections Associated with Medical Tourism to the Dominican Republic, 2013-2014(1).

    PubMed

    Schnabel, David; Esposito, Douglas H; Gaines, Joanna; Ridpath, Alison; Barry, M Anita; Feldman, Katherine A; Mullins, Jocelyn; Burns, Rachel; Ahmad, Nina; Nyangoma, Edith N; Nguyen, Duc B; Perz, Joseph F; Moulton-Meissner, Heather A; Jensen, Bette J; Lin, Ying; Posivak-Khouly, Leah; Jani, Nisha; Morgan, Oliver W; Brunette, Gary W; Pritchard, P Scott; Greenbaum, Adena H; Rhee, Susan M; Blythe, David; Sotir, Mark

    2016-08-01

    During 2013, the Maryland Department of Health and Mental Hygiene in Baltimore, MD, USA, received report of 2 Maryland residents whose surgical sites were infected with rapidly growing mycobacteria after cosmetic procedures at a clinic (clinic A) in the Dominican Republic. A multistate investigation was initiated; a probable case was defined as a surgical site infection unresponsive to therapy in a patient who had undergone cosmetic surgery in the Dominican Republic. We identified 21 case-patients in 6 states who had surgery in 1 of 5 Dominican Republic clinics; 13 (62%) had surgery at clinic A. Isolates from 12 (92%) of those patients were culture-positive for Mycobacterium abscessus complex. Of 9 clinic A case-patients with available data, all required therapeutic surgical intervention, 8 (92%) were hospitalized, and 7 (78%) required ≥3 months of antibacterial drug therapy. Healthcare providers should consider infection with rapidly growing mycobacteria in patients who have surgical site infections unresponsive to standard treatment. PMID:27434822

  15. Multistate US Outbreak of Rapidly Growing Mycobacterial Infections Associated with Medical Tourism to the Dominican Republic, 2013–20141

    PubMed Central

    Esposito, Douglas H.; Gaines, Joanna; Ridpath, Alison; Barry, M. Anita; Feldman, Katherine A.; Mullins, Jocelyn; Burns, Rachel; Ahmad, Nina; Nyangoma, Edith N.; Nguyen, Duc B.; Perz, Joseph F.; Moulton-Meissner, Heather A.; Jensen, Bette J.; Lin, Ying; Posivak-Khouly, Leah; Jani, Nisha; Morgan, Oliver W.; Brunette, Gary W.; Pritchard, P. Scott; Greenbaum, Adena H.; Rhee, Susan M.; Blythe, David; Sotir, Mark

    2016-01-01

    During 2013, the Maryland Department of Health and Mental Hygiene in Baltimore, MD, USA, received report of 2 Maryland residents whose surgical sites were infected with rapidly growing mycobacteria after cosmetic procedures at a clinic (clinic A) in the Dominican Republic. A multistate investigation was initiated; a probable case was defined as a surgical site infection unresponsive to therapy in a patient who had undergone cosmetic surgery in the Dominican Republic. We identified 21 case-patients in 6 states who had surgery in 1 of 5 Dominican Republic clinics; 13 (62%) had surgery at clinic A. Isolates from 12 (92%) of those patients were culture-positive for Mycobacterium abscessus complex. Of 9 clinic A case-patients with available data, all required therapeutic surgical intervention, 8 (92%) were hospitalized, and 7 (78%) required ≥3 months of antibacterial drug therapy. Healthcare providers should consider infection with rapidly growing mycobacteria in patients who have surgical site infections unresponsive to standard treatment. PMID:27434822

  16. Characteristics of growing media mixes and application for open-field production of strawberry (Fragaria ananassa)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Pathogen-free growing media are widely used for strawberry production in protected structures in Europe but not common in the United States. There is a need to investigate the feasibility of producing strawberry fruits in open fields with the pathogen-free media in the U.S. The objective of the stud...

  17. Growing Indian Fig Opuntia on selenium-laden agriculture drainage sediment under field conditions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Growing alternative crops for saline and selenium (Se) impacted lands in arid regions, e.g., Western United States, depends upon the plant’s ability to tolerate the presence of high salts and boron (B). In this field study, we planted 2-month old cacti plants on 30 x 1m beds and evaluated the abilit...

  18. Environmental Field Surveys, EMF Rapid Program, Engineering Project No.3

    SciTech Connect

    Enertech Consultants

    1996-04-01

    The EMF Research and Public Information Dissemination Program (RAPID) includes several engineering research in the area of exposure assessment and source characterization. RAPID engineering project No. 3: ''Environmental Field Surveys'' was performed to obtain information on the levels and characteristics of different environments, for which only limited data were available, especially in comparison to magnetic field data for the residential environment and for electric utility facilities, such as power lines and substations. This project was also to provide information on the contribution of various field sources in the surveyed environments. Magnetic field surveys were performed at four sites for each of five environments: schools, hospitals, office buildings, machine shops, and grocery stores. Of the twenty sites surveyed, 11 were located in the San Francisco Bay Area and 9 in Massachusetts. The surveys used a protocol based on magnetic field measurements and observation of activity patterns, designed to provide estimates of magnetic field exposure by type of people and by type of sources. The magnetic field surveys conducted by this project produced a large amount of data which will form a part of the EMF measurement database Field and exposure data were obtained separately for ''area exposure'' and ''at exposure points''. An exposure point is a location where persons engage in fixed, site specific activities near a local source that creates a significant increase in the area field. The area field is produced by ''area sources'', whose location and field distribution is in general not related to the location of the people in the area.

  19. Prosthetic joint infections secondary to rapidly growing mycobacteria: Two case reports and a review of the literature.

    PubMed

    Henry, Michael W; Miller, Andy O; Kahn, Barbara; Windsor, Russel E; Brause, Barry D

    2016-06-01

    Rapidly growing mycobacteria (RGM) are a rare but treatable cause of prosthetic joint infections. This study reports on two patients comprising three prosthetic joint infections caused by RGM successfully treated at the institution. With removal of the infected prosthetic joint and judicious use of prolonged courses of antibiotics, patients with prosthetic joint infections secondary to RGM can both be cured and retain function of the affected joint. In addition, this study identified 40 additional cases reported during an extensive review of the literature and provide a summary of these cases. These infections can present within days of arthroplasty or can develop only decades after the index surgery. The clinical presentations often mimic those of more routine bacterial prosthetic joint infections. PMID:27030918

  20. Cutaneous infection with rapidly-growing mycobacterial infection following heart transplant: a case report and review of the literature.

    PubMed

    Freudenberger, R S; Simafranca, S M

    2006-06-01

    Nontuberculous mycobacteria are ubiquitous and infrequently cause disease in humans, most commonly in immunocompromised hosts. One type of nontuberculous mycobacteria is Mycobacterium abscessus. This rapidly growing mycobacterium is a soil or water saprophyte. It was previously classified as a subspecies of Mycobacterium chelonae; however, current taxonomy now designates it as a separate species. Rapidly growing mycobacteria are resistant to the usual antituberculous drugs. This emphasizes the need for tissue diagnosis and obtaining specimens for culture and drug susceptibility testing. M abscessus has been reported to cause infection in renal transplant patients, but is less well described in cardiac transplant recipients. We report the case of a 65-year-old man who presented 5 years after transplantation for heart failure, with a 2-day history of progressive right lower extremity swelling and redness. He recalled no antecedent trauma and denied any unusual epidemiologic exposure. Medical history included diabetes with peripheral neuropathy and renal insufficiency, hypertension, and right-sided heart failure felt to be due to obstructive sleep apnea. A punch biopsy of the area grew M abscessus sensitive only to clarithromycin (MIC not reported), amikacin (30 microg/mL), and kanamycin (30 microg/mL). On subsequent clinic visits, the patient had decreased leg swelling and resolution of the papular lesions. Ten weeks into antimycobacterial therapy, the patient had an increase in creatinine to 4.9 mg/dL from a baseline of 2.0 with fluid overload necessitating discontinuation of aminoglycoside therapy. He completed 6 months of treatment with oral clarithromycin. We describe these findings and review the literature in this report. PMID:16797350

  1. Rapidly changing climatic conditions for wine grape growing in the Okanagan Valley region of British Columbia, Canada.

    PubMed

    Rayne, Sierra; Forest, Kaya

    2016-06-15

    A statistical analysis was conducted on long-term climate records for sites bordering Okanagan Lake in the Okanagan Valley viticultural region of British Columbia, Canada. Average wine grape growing season temperatures are increasing rapidly in the area over the post-1980 period at rates upwards of 7.0±1.3°C/century. Similar increases in the average dormant season temperature are evident. These temperature changes are likely some of the most extreme observed among the world's wine producing areas during the past few decades. Growing degree day base 10°C (GDD10) has increased by nearly 50% at some locations since the 1970s, resulting in major impacts on the corresponding climate classification for viticulture. If current climate trends continue, the southern and central portions of the region will likely enter Winkler region II within the next few decades, placing them in the same category as well-established warmer wine regions from France, Spain, Italy, and Australia. The large dormant season temperature increases over the last several decades have resulted in the area no longer being a cold season outlier when compared to most other cool-climate viticultural areas. Based on average growing season temperatures, the southern end of Okanagan Lake has moved out of the cool-climate viticultural classification and into the intermediate zone, while the central and northern regions are now at the cool/intermediate viticulture interface, similar to the historical positions of the Rhine Valley in Germany, northern Oregon in the United States, and the Loire Valley, Burgundy-Cote, Burgundy-Beaujolais, and Champagne appelations of France. The corresponding suitable grape species for the area have evolved into warmer region varietals during this time frame, having substantial economic impacts on producers. Increased temperatures are also expected to bring greater threats from agricultural pests, notably Pierce's disease from the bacterium Xylella fastidiosa. PMID:26971218

  2. Field-Scale Soil Moisture Mapping Using RapidEye Satellite Imagery and Distributed Hydrologic Modeling

    NASA Astrophysics Data System (ADS)

    Yourek, M. A.; Brooks, E. S.; Magney, T. S.; Anderson, T. R.; Brown, D. J.

    2013-12-01

    In the dryland cropping region of the Pacific Northwest there is a growing need for tools which capture the spatial variability in soil moisture and crop response within a field. Soil moisture distribution within a field often reflects the spatial variability in underlying soil properties and is often well correlated with crop yield patterns. With improved modeling and management tools that capture this field-scale spatial variability, nitrogen fertilizer prescription maps can be developed which optimize nitrogen-use efficiency and profit while minimizing nitrous oxide emissions and nitrate leaching losses. In this project we use high spatial resolution (5 meter) vegetation indices calculated from RapidEye visual, near infrared, and red-edge wavebands to capture changes in crop response throughout the growing season. The late season drying/senescence patterns are compared to simulated soil moisture patterns from a grid-based distributed hydrologic model and apparent soil electrical conductivity patterns measured using an EM38 sensor. Observed soil moisture, surface runoff and surface saturation patterns are compared to model predictions in two ~10 ha field catchments, each having distinct soil properties, climates and topography. We investigate the use of vegetation indices from RapidEye imagery to identify characteristic soil structural patterns as a way to improve both dry and wet season soil moisture predictions.

  3. Rapid magnetofluidic mixing in a uniform magnetic field.

    PubMed

    Zhu, Gui-Ping; Nguyen, Nam-Trung

    2012-11-21

    This paper reports the investigation of mixing phenomena caused by the interaction between a uniform magnetic field and a magnetic fluid in a microfluidic chamber. The flow system consists of a water-based ferrofluid and a mixture of DI water and glycerol. Under a uniform magnetic field, the mismatch in magnetization of the fluids leads to instability at the interface and subsequent rapid mixing. The mismatch of magnetization is determined by concentration of magnetic nanoparticles. Full mixing at a relatively low magnetic flux density up to 10 mT can be achieved. The paper discusses the impact of key parameters such as magnetic flux density, flow rate ratio and viscosity ratio on the mixing efficiency. Two main mixing regimes are observed. In the improved diffusive mixing regime under low field strength, magnetic particles of the ferrofluid migrate into the diamagnetic fluid. In the bulk transport regime under high field strength, the fluid system is mixed rapidly by magnetically induced secondary flow in the chamber. The mixing concept potentially provides a wireless solution for a lab-on-a-chip system that is low-cost, robust, free of induced heat and independent of pH level or ion concentration. PMID:22990170

  4. Shrinkage of a rapidly growing tumor by drug-loaded polymersomes: pH-triggered release through copolymer degradation.

    PubMed

    Ahmed, Fariyal; Pakunlu, Refika I; Srinivas, Goundla; Brannan, Aaron; Bates, Frank; Klein, Michael L; Minko, Tamara; Discher, Dennis E

    2006-01-01

    Carrier-mediated delivery of drugs into the cytosol is often limited by either release from the carrier or release from an internalizing endolysosome. Here, loading, delivery, and cytosolic uptake of drug mixtures from degradable polymersomes are shown to exploit both the thick membrane of these block copolymer vesicles and their aqueous lumen as well as pH-triggered release within endolysosomes. Our initial in vivo studies demonstrate growth arrest and shrinkage of rapidly growing tumors after a single intravenous injection of polymersomes composed of poly(ethylene glycol)-polyester. Vesicles are shown to break down into membrane-lytic micelles within hours at 37 degrees C and low pH, although storage at 4 degrees C allows retention of drug for over a month. It is then shown that cell entry of the polymersomes into endolysosomes is followed by copolymer-induced endolysosomal rupture with release of cytotoxic drugs. Above a critical poration concentration (CCPC) that is easily achieved within endolysosomes and that scales with copolymer proportions and molecular weight, the copolymer micelles are seen to disrupt lipid membranes and thereby enhance drug activity. Neutral polymersomes and related macrosurfactant assemblies can thus create novel pathways within cells for controlled release and delivery. PMID:16749866

  5. Rapid change of field line connectivity and reconnection in stochastic magnetic fields

    SciTech Connect

    Huang, Yi-Min; Bhattacharjee, A.; Boozer, Allen H.

    2014-10-01

    Magnetic fields without a direction of continuous symmetry have the generic feature that neighboring field lines exponentiate away from each other and become stochastic, and hence the ideal constraint of preserving magnetic field line connectivity becomes exponentially sensitive to small deviations from ideal Ohm's law. The idea of breaking field line connectivity by stochasticity as a mechanism for fast reconnection is tested with numerical simulations based on reduced magnetohydrodynamics equations with a strong guide field line-tied to two perfectly conducting end plates. Starting from an ideally stable force-free equilibrium, the system is allowed to undergo resistive relaxation. Two distinct phases are found in the process of resistive relaxation. During the quasi-static phase, rapid change of field line connectivity and strong induced flow are found in regions of high field line exponentiation. However, although the field line connectivity of individual field lines can change rapidly, the overall pattern of field line mapping appears to deform gradually. From this perspective, field line exponentiation appears to cause enhanced diffusion rather than reconnection. In some cases, resistive quasi-static evolution can cause the ideally stable initial equilibrium to cross a stability threshold, leading to formation of intense current filaments and rapid change of field line mapping into a qualitatively different pattern. It is in this onset phase that the change of field line connectivity is more appropriately designated as magnetic reconnection. Our results show that rapid change of field line connectivity appears to be a necessary, but not a sufficient condition for fast reconnection.

  6. Rapid topography mapping of scalar fields: Large molecular clusters

    NASA Astrophysics Data System (ADS)

    Yeole, Sachin D.; López, Rafael; Gadre, Shridhar R.

    2012-08-01

    An efficient and rapid algorithm for topography mapping of scalar fields, molecular electron density (MED) and molecular electrostatic potential (MESP) is presented. The highlight of the work is the use of fast function evaluation by Deformed-atoms-in-molecules (DAM) method. The DAM method provides very rapid as well as sufficiently accurate function and gradient evaluation. For mapping the topography of large systems, the molecular tailoring approach (MTA) is invoked. This new code is tested out for mapping the MED and MESP critical points (CP's) of small systems. It is further applied to large molecular clusters viz. (H2O)25, (C6H6)8 and also to a unit cell of valine crystal at MP2/6-31+G(d) level of theory. The completeness of the topography is checked by extensive search as well as applying the Poincaré-Hopf relation. The results obtained show that the DAM method in combination with MTA provides a rapid and efficient route for mapping the topography of large molecular systems.

  7. Field demonstration of rapid turnaround, multilevel groundwater screening

    SciTech Connect

    Tingle, A.R.; Baker, L.; Long, D.D.; Miracle, M.

    1994-09-01

    A combined technology approach to rapidly characterizing source area and downgradient groundwater associated with a past fuel spill has been field tested. The purpose of this investigation was to determine the presence and extent of fuel-related compounds or indications of their biodegradation in groundwater. The distance from the source area to be investigated was established by calculating the potential extent of a plume based only on groundwater flow velocities. To accomplish this objective, commercially available technologies were combined and used to rapidly assess the source area and downgradient groundwater associated with the fuel discharge. The source of contamination that was investigated overlies glacial sand and gravel outwash deposits. Historical data suggest that from 1955 to 1970 as many as 1 to 6 million pi of aviation gasoline (AVGAS) were god at the study area. Although the remedial investigation (RI) for this study area indicated fuel-related groundwater contamination at the source area, fuel-related contamination was not detected in downgradient monitoring wells. Rapid horizontal groundwater velocities and the 24-year time span from the last reported spill farther suggest that a plume of contaminated groundwater could extend several thousand feet downgradient. The lack of contamination downgradient from the source suggests two possibilities: (1) monitoring wells installed during the RI did not intersect the plume or (2) fuel-related compounds had naturally degraded.

  8. Rapid adhesive bonding and field repair of aerospace materials

    NASA Technical Reports Server (NTRS)

    Stein, B. A.

    1985-01-01

    Adhesive bonding in the aerospace industry typically utilizes autoclaves or presses which have considerable thermal mass. As a consequence, the rates of heatup and cooldown of the bonded parts are limited and the total time and cost of the bonding process are often relatively high. Many of the adhesives themselves do not inherently require long processing times. Bonding could be performed rapidly if the heat was concentrated in the bond lines or at least in the adherends. Rapid Adhesive Bonding concepts are developed to utilize induction heating techniques to provide heat directly to the bond line and/or adherends without heating the entire structure, supports, and fixtures of a bonding assembly. Bonding times for specimens can be cut by a factor of 10 to 100 compared to standard press or autoclave bonding. The development of Rapid Adhesive Bonding for lap shear specimens (per ASTM D1002 and D3163), for aerospace panel or component bonding, and for field repair needs of metallic and advanced fiber reinforced polymeric-matrix composite structures is reviewed. Equipment and procedures are described for bonding and repairing thin sheets, simple geometries, and honeycomb core panels.

  9. Rapid current transition in a crossed-field diode

    SciTech Connect

    Verboncoeur, J.P.; Birdsall, C.K.

    1996-03-01

    The transmitted current in a crossed-field gap has been characterized analytically by a number of authors. Using a one dimensional PIC simulation, we explore the behavior of the crossed-field diode at {ital B}={ital B}{sub {ital Hull}}. For mono-energetic (cold) emission, a rapid reduction of transmitted current is observed when the injected current exceeds the critical current by just 1{percent}. The addition of a small electron temperature normal to the cathode eliminates the transition, even for {ital kT}/{ital V}{approximately}10{sup {minus}5} ({ital V}=10 kV, gap = 1 cm, {ital B}=337 G, {ital J}=1.69 A/cm{sup 2}), while an isotropic velocity distribution accelerates the transition. {copyright} {ital 1996 American Institute of Physics.}

  10. Mycobacterium saopaulense sp. nov., a rapidly growing mycobacterium closely related to members of the Mycobacterium chelonae--Mycobacterium abscessus group.

    PubMed

    Nogueira, Christiane Lourenço; Whipps, Christopher M; Matsumoto, Cristianne Kayoko; Chimara, Erica; Droz, Sara; Tortoli, Enrico; de Freitas, Denise; Cnockaert, Margo; Palomino, Juan Carlos; Martin, Anandi; Vandamme, Peter; Leão, Sylvia Cardoso

    2015-12-01

    Five isolates of non-pigmented, rapidly growing mycobacteria were isolated from three patients and,in an earlier study, from zebrafish. Phenotypic and molecular tests confirmed that these isolates belong to the Mycobacterium chelonae-Mycobacterium abscessus group, but they could not be confidently assigned to any known species of this group. Phenotypic analysis and biochemical tests were not helpful for distinguishing these isolates from other members of the M. chelonae–M.abscessus group. The isolates presented higher drug resistance in comparison with other members of the group, showing susceptibility only to clarithromycin. The five isolates showed a unique PCR restriction analysis pattern of the hsp65 gene, 100 % similarity in 16S rRNA gene and hsp65 sequences and 1-2 nt differences in rpoB and internal transcribed spacer (ITS) sequences.Phylogenetic analysis of a concatenated dataset including 16S rRNA gene, hsp65, and rpoB sequences from type strains of more closely related species placed the five isolates together, as a distinct lineage from previously described species, suggesting a sister relationship to a group consisting of M. chelonae, Mycobacterium salmoniphilum, Mycobacterium franklinii and Mycobacterium immunogenum. DNA–DNA hybridization values .70 % confirmed that the five isolates belong to the same species, while values ,70 % between one of the isolates and the type strains of M. chelonae and M. abscessus confirmed that the isolates belong to a distinct species. The polyphasic characterization of these isolates, supported by DNA–DNA hybridization results,demonstrated that they share characteristics with M. chelonae–M. abscessus members, butconstitute a different species, for which the name Mycobacterium saopaulense sp. nov. is proposed. The type strain is EPM10906T (5CCUG 66554T5LMG 28586T5INCQS 0733T). PMID:26358475

  11. Groundwater geochemistry in the Seminole Well Field, Cedar Rapids, Iowa

    USGS Publications Warehouse

    Boyd, Robert A.

    1999-01-01

    The City of Cedar Rapids obtains its municipal water supply from four well fields in an alluvial aquifer along the Cedar River in east-central Iowa. Since 1992, the City and the U.S. Geological Survey have cooperatively studied the groundwater-flow system and water chemistry near the well fields. The geochemistry in the alluvial aquifer near the Seminole Well Field was assessed to identify potentially reactive minerals and possible chemical reactions that produce observed changes in water chemistry. Calcite, dolomite, ferrihydrite, quartz, rhodochrosite, and siderite were identified as potentially reactive minerals by calculating saturation indexes. Aluminosiicate minerals including albite, Ca-montmorillonite, gibbsite, illite, K-feldspar, and kaolinite were identified as potentially reactive minerals using hypothetical saturation indexes calculated with an assumed dissolved aluminum concentration of 1 microgram per liter. Balanced chemical equations derived from inverse-modeling techniques were used to assess chemical reactions as precipitation percolates to the water table. Calcite dissolution was predominate, but aluminosilicate weathering, cation exchange, and redox reactions also likely occurred. Microbial-catalyzed redox reactions altered the chemical composition of water infiltrating from the Cedar River into the alluvial aquifer by consuming dissolved oxygen, reducing nitrate, and increasing dissolved iron and manganese concentrations. Nitrate reduction only occurred in relatively shallow (3 to 7 meters below land surface) groundwater near the Cedar River and did not occur in water infiltrating to deeper zones of the alluvial aquifer.

  12. RAPID CASING CORROSION IN HIGH TEMPERATURE LIQUID DOMINATED GEOTHERMAL FIELDS

    SciTech Connect

    Bixley, P.F.; Wilson, D.M.

    1985-01-22

    Downhole logging and workover operations on 12-20 year old wells in several high temperature, liquid-dominated geothermal fields in New Zealand has shown that severe corrosion has commonly occurred in the production casing string where this is unprotected by larger diameter casings. To date corrosion products from only one well have been examined in detail. These indicate that corrosion attack commences at the outer casing wall and continues at a rate as great as 0.8mm/year. Rapid corrosion has been attributed to neutral or slightly acid high bicarbonate waters formed by the absorption of steam and gas into shallow aquifers not directly connected to the deeper, high chloride reservoir.

  13. Magnetic field-magnetic nanoparticle culture system used to grow in vitro murine embryonic stem cells.

    PubMed

    de Freitas, Erika Regina Leal; Soares, Paula Roberta Otaviano; de Santos, Rachel Paula; dos Santos, Regiane Lopes; Porfírio, Elaine Paulucio; Báo, Sônia N; Lima, Emília Celma Oliveira; Guillo, Lídia Andreu

    2011-01-01

    The in vitro growth of embryonic stem cells (ESCs) is usually obtained in the presence of murine embryonic fibroblasts (MEF), but new methods for in vitro expansion of ESCs should be developed due to their potential clinical use. This study aims to establish a culture system to expand and maintain ESCs in the absence of MEF by using murine embryonic stem cells (mECS) as a model of embryonic stem cell. Magnetic nanoparticles (MNPs) were used for growing mESCs in the presence of an external magnetic field, creating the magnetic field-magnetic nanoparticle (MF-MNP) culture system. The growth characteristics were evaluated showing a doubling time slightly higher for mESCs cultivated in the presence of the system than in the presence of the MEF. The undifferentiated state was characterized by RT-PCR, immunofluorescence, alkaline phosphatase activity and electron microscopy. Murine embryonic stem cells cultivated in presence of the MF-MNP culture system exhibited Oct-4 and Nanog expression and high alkaline phosphatase activity. Ultrastructural morphology showed that the MF-MNP culture system did not interfere with processes that cause structural changes in the cytoplasm or nucleus. The MF-MNP culture system provides a tool for in vitro expansion of mESCs and could contribute to studies that aim the therapeutic use of embryonic stem cells. PMID:21446404

  14. Rapid Numerical Simulation of Viscous Axisymmetric Flow Fields

    NASA Technical Reports Server (NTRS)

    Tweedt, Daniel L.; Chima, Rodrick V.

    1995-01-01

    A two-dimensional Navier-Stokes code has been developed for rapid numerical simulation of axisymmetric flow fields, including flow fields with an azimuthal velocity component. The azimuthal-invariant Navier-Stokes equations in a cylindrical coordinate system are mapped to a general body-fitted coordinate system, with the streamwise viscous terms then neglected by applying the thin-layer approximation. Turbulence effects are modeled using an algebraic model, typically the Baldwin-Lomax turbulence model, although a modified Cebeci-Smith model can also be used. The equations are discretized using central finite differences and solved using a multistage Runge-Kutta algorithm with a spatially varying time step and implicit residual smoothing. Results are presented for calculations of supersonic flow over a waisted body-of-revolution, transonic flow through a normal shock wave in a straight circular duct of constant cross sectional area, swirling supersonic (inviscid) flow through a strong shock in a straight radial duct, and swirling subsonic flow in an annular-to-circular diffuser duct. Comparisons between computed and experimental results are in fair to good agreement, demonstrating that the viscous code can be a useful tool for practical engineering design and analysis work.

  15. Evaluation of capillary and myofiber density in the pectoralis major muscles of rapidly growing, high-yield broiler chickens during increased heat stress.

    PubMed

    Joiner, K S; Hamlin, G A; Lien, A R J; Bilgili, S F

    2014-09-01

    Skeletal muscle development proceeds from early embryogenesis through marketing age in broiler chickens. While myofiber formation is essentially complete at hatching, myofiber hypertrophy can increase after hatch by assimilation of satellite cell nuclei into myofibers. As the diameter of the myofibers increases, capillary density peripheral to the myofiber is marginalized, limiting oxygen supply and subsequent diffusion into the myofiber, inducing microischemia. The superficial and deep pectoralis muscles constitute 25% of the total body weight in a market-age bird; thus compromise of those muscle groups can have profound economic impact on broiler production. We hypothesized that marginal capillary support relative to the hypertrophic myofibers increases the incidence of microischemia, especially in contemporary high-yield broilers under stressing conditions such as high environmental temperatures. We evaluated the following parameters in four different broiler strains at 39 and 53 days of age when reared under thermoneutral (20 to 25 C) versus hot (30 to 35 C) environmental conditions: capillary density, myofiber density and diameter, and degree of myodegeneration. Our data demonstrate that myofiber diameter significantly increased with age (P > or = 0.0001), while the absolute numbers of capillaries, blood vessels, and myofibers visible in five 400 x microscopic fields decreased (P > or = 0.0001). This is concomitant with marginalization of vascular support in rapidly growing myofibers. The myofiber diameter was significantly lower with hot environmental temperatures (P > or = 0.001); therefore, the absolute number of myofibers visible in five 400X microscopic fields was significantly higher. The incidence and subjective degree of myodegeneration characterized by loss of cross-striations, myocyte hyperrefractility, sarcoplasmic vacuolation, and nuclear pyknosis or loss also increased in hot conditions. Differences among strains were not observed. PMID:25518431

  16. Sclerophylly and leaf anatomical traits of five field-grown olive cultivars growing under drought conditions.

    PubMed

    Bacelar, Eunice A; Correia, Carlos M; Moutinho-Pereira, José M; Gonçalves, Berta C; Lopes, João I; Torres-Pereira, José M G

    2004-02-01

    Leaf-level morphological and structural adaptations to reduce water loss were examined in five olive (Olea europaea L.) tree cultivars (Arbequina, Blanqueta, Cobrançosa, Manzanilla and Negrinha) growing under field conditions with low water availability. Leaf measurements included leaf tissue thickness, stomatal density, leaf area, leaf mass per unit area, density of leaf tissue, relative water content, succulence, water saturation deficit, water content at saturation and cuticular transpiration rate. We found considerable genotypic differences among the cultivars. Negrinha, Manzanilla and Cobrançosa had more morphological and structural leaf adaptations to protect against water loss than the other cultivars. Manzanilla and Negrinha enhanced their sclerophylly by building parenchyma tissues and increasing protective structures like the upper cuticle and both the upper and lower epidermis. Cobrançosa exhibited good protection against water loss through high density of foliar tissue and by thick cuticle and trichome layers. Compared with the Negrinha, Manzanilla and Cobrançosa cultivars, Arbequina leaves had a thinner trichome layer, implying that the leaves were less protected against water loss; however, the development of smaller leaves may reduce water loss at the whole-plant level. Among cultivars, Blanqueta had the largest leaves and some anatomical traits that may lead to high water loss, especially from the adaxial surface. The mechanisms employed by the cultivars to cope with summer stress are discussed at the morpho-structural level. PMID:14676039

  17. Rapid brain MRI acquisition techniques at ultra-high fields.

    PubMed

    Setsompop, Kawin; Feinberg, David A; Polimeni, Jonathan R

    2016-09-01

    Ultra-high-field MRI provides large increases in signal-to-noise ratio (SNR) as well as enhancement of several contrast mechanisms in both structural and functional imaging. Combined, these gains result in a substantial boost in contrast-to-noise ratio that can be exploited for higher-spatial-resolution imaging to extract finer-scale information about the brain. With increased spatial resolution, however, there is a concurrent increased image-encoding burden that can cause unacceptably long scan times for structural imaging and slow temporal sampling of the hemodynamic response in functional MRI - particularly when whole-brain imaging is desired. To address this issue, new directions of imaging technology development - such as the move from conventional 2D slice-by-slice imaging to more efficient simultaneous multislice (SMS) or multiband imaging (which can be viewed as "pseudo-3D" encoding) as well as full 3D imaging - have provided dramatic improvements in acquisition speed. Such imaging paradigms provide higher SNR efficiency as well as improved encoding efficiency. Moreover, SMS and 3D imaging can make better use of coil sensitivity information in multichannel receiver arrays used for parallel imaging acquisitions through controlled aliasing in multiple spatial directions. This has enabled unprecedented acceleration factors of an order of magnitude or higher in these imaging acquisition schemes, with low image artifact levels and high SNR. Here we review the latest developments of SMS and 3D imaging methods and related technologies at ultra-high field for rapid high-resolution functional and structural imaging of the brain. Copyright © 2016 John Wiley & Sons, Ltd. PMID:26835884

  18. Electric Field Measurements During the Genesis and Rapid Intensification Processes (GRIP) Field Program

    NASA Technical Reports Server (NTRS)

    Bateman, Monte G.; Blakeslee, Richard J.; Mach, Douglas M.

    2010-01-01

    During the Genesis and Rapid Intensification Processes (GRIP) field program, a system of 6 electric field mills was flown on one of NASA's Global Hawk aircraft. We placed several mills on the aircraft to enable us to measure the vector electric field. We created a distributed, ethernet-connected system so that each sensor has its own embedded Linux system, complete with web server. This makes our current generation system fully "sensor web enabled." The Global Hawk has several unique qualities, but relevant to quality storm electric field measurements are high altitude (20 km) and long duration (20-30 hours) flights. There are several aircraft participating in the GRIP program, and coordinated measurements are happening. Lightning and electric field measurements will be used to study the relationships between lightning and other storm characteristics. It has been long understood that lightning can be used as a marker for strong convective activity. Past research and field programs suggest that lightning flash rate may serve as an indicator and precursor for rapid intensification change in tropical cyclones and hurricanes. We have the opportunity to sample hurricanes for many hours at a time and observe intensification (or de-intensification) periods. The electrical properties of hurricanes during such periods are not well known. American

  19. Growing Together: Boston Area Youth Follow Food from Field to Table.

    ERIC Educational Resources Information Center

    LeVaux, Ari

    2001-01-01

    The Food Project brings together Boston-area youth to grow and distribute food for the hungry and in the process, develop leadership and job skills. Summer crew workers (high school students) grow vegetables, distribute them to food pantries, and sell them at farmer's markets. Crew leaders learn more about sustainable agriculture and hone…

  20. Rapid susceptibility testing for slowly growing nontuberculous mycobacteria using a colorimetric microbial viability assay based on the reduction of water-soluble tetrazolium WST-1.

    PubMed

    Tsukatani, T; Suenaga, H; Shiga, M; Ikegami, T; Ishiyama, M; Ezoe, T; Matsumoto, K

    2015-10-01

    Rapid susceptibility testing for slowly growing nontuberculous mycobacteria (NTM) using a colorimetric microbial viability assay based on the reduction of the water-soluble tetrazolium salt {2-(4-iodophenyl)-3-(4-nitrophenyl)-5-(2,4-disulfophenyl)-2H-tetrazolium, monosodium salt (WST-1)} using 2,3,5,6-tetramethyl-1,4-benzoquinone as an electron mediator was developed. Using the Clinical and Laboratory Standards Institute (CLSI) method, a long-term incubation time (7-14 days) was required to determine the minimum inhibitory concentrations (MICs) of the slowly growing NTM. The MICs for a variety of different antibiotics against the slowly growing NTM were determined by the WST-1 colorimetric method and compared with those obtained using the broth microdilution methods approved by the CLSI. Good agreement was found between the MICs determined after 3-4 days using the WST-1 colorimetric method and those obtained after 10-14 days using the broth microdilution method. The results suggest that the WST-1 colorimetric assay is a useful method for the rapid determination of the MICs for the slowly growing NTM. PMID:26173690

  1. Slowly and Rapidly Propagating "Liquid Flames" in Gravitational Fields

    NASA Technical Reports Server (NTRS)

    Shkadinsky, K. G.; Shkadinskaya, G. V.; Matkowsky, B. J.; Gokoglu, S. (Technical Monitor)

    2000-01-01

    We consider the combustion, in a gravitational field, of a heterogeneous powder mixture compressed into a solid sample, in which the high temperature ahead of the reaction zone destroys the solid, due, e.g. to melting of some of components of the mixture. Thus, a suspension is formed, consisting of a liquid bath containing solid or liquid particles. Processes such as heat and mass transfer as well as chemical reactions in the suspension determine the structure of the combustion wave and its propagation velocity. Under the influence of gravitational forces there is the possibility of relative motion of the liquid and solid. Previous theoretical analyses considered the rate of beat transfer between the solid and liquid phases to be sufficiently large that their two distinct temperatures rapidly equilibrated to a single temperature. In addition to this case, we also consider the case when the rate of heat transfer is not so large and the model involves the separate temperatures of the solid and liquid phases. We find that multiplicity of traveling wave structures is possible. In particular, in addition to a low velocity structure, which is essentially the same as that obtained from the one temperature description, we find a high velocity structure, which does not exist in the one temperature description, but rather depends on the fact that the solid and fluid temperatures differ from each other. Both structures can exist for the same parameter values in a given range. We describe the dependence of the combustion characteristics of the two structures on gravitational forces and other factors. In particular, we compare the characteristics in gravity and microgravity environments.

  2. Growing Pains from Rapid Growth: A Historical Case Study of George Fox University from 1983 to 2003

    ERIC Educational Resources Information Center

    Railsback, Gary L.

    2007-01-01

    This article is a historical case study of George Fox University (GFU) in Newberg, Oregon. Using organizational lifecycle as a theoretical framework, George Fox University had a long and delayed childhood in that it remained a small and struggling institution for most of the 20th century, and then experienced rapid growth in the late 1980s. This…

  3. High temperature and deformation field measurements at the vicinity of dynamically growing shear bands

    SciTech Connect

    Rosakis, A.J.; Ravichandran, G.; Zhou, M.

    1995-12-31

    The phenomenon of dynamic initiation and propagation of adiabatic shear bands is experimentally and numerically investigated. Pre-notched metal plates are subjected to asymmetric impact load histories (dynamic mode-II loading). Dynamic shear bands emanate from the notch tip and propagate rapidly in a direction nearly parallel to the direction of the impact. Real time temperature histories along a line intersecting and perpendicular to the shear band paths are recorded by means of a high-speed infrared detector system. The materials studied are C-300 (a maraging steel) and Ti - 6 Al - 4 V alloy. Experiments show that the peak temperatures inside the propagating shear bands are approaching 90% of the melting point for C-300 and are significantly lower for the titanium alloy (up to 600{degrees}C). Additionally, measured distances of shear band propagation indicate stronger resistance to shear banding by the Ti - 6Al - 4V alloy. Deformation fields around the propagating shear bands are recorded using high-speed photography. Shear band speeds are found to strongly depend on impact velocities, and are as high as 1200 m/s for C-300 steels. Finite Element simulations of the experiments are carried out under the context of plane strain, considering finite deformations, inertia, heat conduction, thermal softening, strain hardening and strain-rate hardening. In the simulations, the shear band propagation is assumed to be governed by a critical plastic strain criterion. The results are compared with experimental measurements obtained using the high-speed infrared detectors and high-speed photography.

  4. Rapid rise time pulsed magnetic field circuit for pump-probe field effect studies.

    PubMed

    Salaoru, T A; Woodward, Jonathan R

    2007-03-01

    Here we describe an electronic circuit capable of producing rapidly switched dc magnetic fields of up to 20 mT with a rise time of 10 ns and a pulse length variable from 50 ns to more than 10 micros, suitable for use in the study of magnetic field effects on radical pair (RP) reactions. This corresponds to switching the field on a time scale short relative to the lifetime of typical RPs and maintaining it well beyond their lifetimes. Previous experiments have involved discharging a capacitor through a low inductance coil for a limited time using a switching circuit. These suffer from decaying field strength over the duration of the pulse given primarily by the ratio of the pulse width to the RC constant of the circuit. We describe here a simple yet elegant solution that completely eliminates this difficulty by employing a feedback loop. This allows a constant field to be maintained over the entire length of the pulse. PMID:17411229

  5. Effect of insulin with concurrent amino acid infusion on protein metabolism in rapidly growing pubertal children with type 1 diabetes.

    PubMed

    Godil, Mushtaq A; Wilson, Thomas A; Garlick, Peter J; McNurlan, Margaret A

    2005-08-01

    Insulin treatment of prepubertal children with insulin-dependent diabetes improves body protein balance by decreasing the rate of protein degradation without stimulating protein synthesis. However, insulin also causes hypoaminoacidemia, so the inability of insulin to stimulate protein synthesis may have been limited by substrate availability. We investigated the ability of insulin to stimulate protein synthesis in growing pubertal children who were given sufficient amino acids to counter insulin-induced hypoaminoacidemia. Protein metabolism in six pubertal children with type 1 diabetes was assessed from leucine kinetics during a primed, 6-h infusion of L-[1-(13)C]leucine. The children were studied in the postabsorptive state during a basal (insulin withdrawn) period and during the infusion of 0.83 mU * kg(-1) * min(-1) human regular insulin. Amino acids and glucose were given with insulin to prevent hypoaminoacidemia and hypoglycemia. Net leucine balance was significantly higher with insulin than in the basal state, the result of decreased protein degradation but also decreased protein synthesis. The data suggest that insulin alone does not increase protein synthesis in pubertal children with type 1 diabetes. PMID:16006430

  6. An aerosol climatology for a rapidly growing arid region (southern Arizona): Major aerosol species and remotely sensed aerosol properties

    PubMed Central

    Sorooshian, Armin; Wonaschütz, Anna; Jarjour, Elias G.; Hashimoto, Bryce I.; Schichtel, Bret A.; Betterton, Eric A.

    2014-01-01

    This study reports a comprehensive characterization of atmospheric aerosol particle properties in relation to meteorological and back trajectory data in the southern Arizona region, which includes two of the fastest growing metropolitan areas in the United States (Phoenix and Tucson). Multiple data sets (MODIS, AERONET, OMI/TOMS, MISR, GOCART, ground-based aerosol measurements) are used to examine monthly trends in aerosol composition, aerosol optical depth (AOD), and aerosol size. Fine soil, sulfate, and organics dominate PM2.5 mass in the region. Dust strongly influences the region between March and July owing to the dry and hot meteorological conditions and back trajectory patterns. Because monsoon precipitation begins typically in July, dust levels decrease, while AOD, sulfate, and organic aerosol reach their maximum levels because of summertime photochemistry and monsoon moisture. Evidence points to biogenic volatile organic compounds being a significant source of secondary organic aerosol in this region. Biomass burning also is shown to be a major contributor to the carbonaceous aerosol budget in the region, leading to enhanced organic and elemental carbon levels aloft at a sky-island site north of Tucson (Mt. Lemmon). Phoenix exhibits different monthly trends for aerosol components in comparison with the other sites owing to the strong influence of fossil carbon and anthropogenic dust. Trend analyses between 1988 and 2009 indicate that the strongest statistically significant trends are reductions in sulfate, elemental carbon, and organic carbon, and increases in fine soil during the spring (March–May) at select sites. These results can be explained by population growth, land-use changes, and improved source controls. PMID:24707452

  7. A Multi-Level Approach to Modeling Rapidly Growing Mega-Regions as a Coupled Human-Natural System

    NASA Astrophysics Data System (ADS)

    Koch, J. A.; Tang, W.; Meentemeyer, R. K.

    2013-12-01

    concept of our modeling approach and describe its strengths and weaknesses. We furthermore use empirical data for the states of North and South Carolina to demonstrate how the modeling framework can be applied to a large, heterogeneous study system with diverse decision-making agents. Grimm et al. (2005) Pattern-Oriented Modeling of Agent-Based Complex Systems: Lessons from Ecology. Science 310, 987-991. Liu et al. (2013) Framing Sustainability in a Telecoupled World. Ecology and Society 18(2), 26. Meentemeyer et al. (2013) FUTURES: Multilevel Simulations of Merging Urban-Rural Landscape Structure Using a Stochastic Patch-Growing Algorithm. Annals of the Association of American Geographers 103(4), 785-807.

  8. Calculating High Resolution CWSI Maps for Entire Growing Season of a Cultivated Barley Field with UAV-Collected Surface Temperatures.

    NASA Astrophysics Data System (ADS)

    Hoffmann, H.; Jensen, R.; Nieto Solana, H.; Friborg, T.; Thomsen, A.

    2015-12-01

    With agriculture as the largest consumer of freshwater and an overall increasing pressure on water resources, developing more efficient irrigation systems is important. Combining the crop water stress index (CWSI) with unmanned aerial vehicles (UAVs) enables detection of which specific areas within a cultivated field that requires irrigation to ensure healthy growing plants. In this study remotely sensed, high resolution surface temperatures are collected with a thermal camera onboard an UAV. Temperatures are used to calculate spatially distributed, high resolution CWSI maps over a barley field during growing seasons 2014 and 2015. In early stages of the barley growing season, surface temperatures are an ensemble of both soil and canopy temperatures. Canopy temperatures are extracted using leaf area index and the two source energy balance modelling scheme. This approach enables CWSI calculations for homogeneous and evenly distributed crops (such as barley) during early as well as late stages of a growing season. CWSI maps are calculated using both an empirical and an analytical approach and are compared and validated against modelled canopy conductance and transpiration rates.

  9. Improved Identification of Rapidly Growing Mycobacteria by a 16S–23S Internal Transcribed Spacer Region PCR and Capillary Gel Electrophoresis

    PubMed Central

    Gray, Timothy J.; Kong, Fanrong; Jelfs, Peter; Sintchenko, Vitali; Chen, Sharon C-A.

    2014-01-01

    The identification of rapidly growing mycobacteria (RGM) remains problematic because of evolving taxonomy, limitations of current phenotypic methods and absence of a universal gene target for reliable speciation. This study evaluated a novel method of identification of RGM by amplification of the mycobacterial 16S–23S rRNA internal transcribed spacer (ITS) followed by resolution of amplified fragments by capillary gel electrophoresis (CGE). Nineteen American Type Culture Collection (ATCC) Mycobacterium strains and 178 clinical isolates of RGM (12 species) were studied. All RGM ATCC strains generated unique electropherograms with no overlap with slowly growing mycobacteria species, including M. tuberculosis. A total of 47 electropherograms for the 178 clinical isolates were observed allowing the speciation of 175/178 (98.3%) isolates, including the differentiation of the closely related species, M. massiliense (M. abscessus subspecies bolletii) and M. abscessus (M. abscessus sensu stricto). ITS fragment size ranged from 332 to 534 bp and 33.7% of clinical isolates generated electropherograms with two distinct peaks, while the remainder where characterized with a single peak. Unique peaks (fragment lengths) were identified for 11/12 (92%) RGM species with only M. moriokaense having an indistinguishable electropherogram from a rarely encountered CGE subtype of M. fortuitum. We conclude that amplification of the 16S–23S ITS gene region followed by resolution of fragments by CGE is a simple, rapid, accurate and reproducible method for species identification and characterization of the RGM. PMID:25013955

  10. Concentrations of Cu, growth, and chlorophyll content of field-cultivated wheat growing in naturally enriched Cu soil

    SciTech Connect

    Cook, C.M.; Vardaka, E.; Lanaras, T.

    1997-02-01

    The Serbo-Macedonian massif of northern Greece is notable for the occurrence of numerous small areas of sulphide mineralisation. Varying degrees of porphyry copper mineralisation, associated with post-Miocene volcanic rocks of rhyolitic composition, can be encountered in agricultural fields which are used mainly for wheat production. Although Cu is a trace element essential to plant nutrition, in excess, it is phytotoxic causing stunted growth, chlorosis and root malformation. Previous studies on wheat growing in these naturally enriched Cu soils have shown that plants have reduced growth, chlorosis and chloroplast ultrastructural changes and a reduced efficiency of the photochemistry of photosystem II (PSII). The objective of this study was to examine the relationship between the Cu concentration of the soil and the plant tissue Cu concentration, growth and chlorophyll content of field-cultivated wheat growing in soils with varying degrees of porphyry copper mineralisation. 15 refs., 2 figs., 1 tab.

  11. A Framework Predicting Water Availability in a Rapidly Growing, Semi-Arid Region under Future Climate Change

    NASA Astrophysics Data System (ADS)

    Han, B.; Benner, S. G.; Glenn, N. F.; Lindquist, E.; Dahal, K. R.; Bolte, J.; Vache, K. B.; Flores, A. N.

    2014-12-01

    Climate change can lead to dramatic variations in hydrologic regime, affecting both surface water and groundwater supply. This effect is most significant in populated semi-arid regions where water availability are highly sensitive to climate-induced outcomes. However, predicting water availability at regional scales, while resolving some of the key internal variability and structure in semi-arid regions is difficult due to the highly non-linearity relationship between rainfall and runoff. In this study, we describe the development of a modeling framework to evaluate future water availability that captures elements of the coupled response of the biophysical system to climate change and human systems. The framework is built under the Envision multi-agent simulation tool, characterizing the spatial patterns of water demand in the semi-arid Treasure Valley area of Southwest Idaho - a rapidly developing socio-ecological system where urban growth is displacing agricultural production. The semi-conceptual HBV model, a population growth and allocation model (Target), a vegetation state and transition model (SSTM), and a statistically based fire disturbance model (SpatialAllocator) are integrated to simulate hydrology, population and land use. Six alternative scenarios are composed by combining two climate change scenarios (RCP4.5 and RCP8.5) with three population growth and allocation scenarios (Status Quo, Managed Growth, and Unconstrained Growth). Five-year calibration and validation performances are assessed with Nash-Sutcliffe efficiency. Irrigation activities are simulated using local water rights. Results show that in all scenarios, annual mean stream flow decreases as the projected rainfall increases because the projected warmer climate also enhances water losses to evapotranspiration. Seasonal maximum stream flow tends to occur earlier than in current conditions due to the earlier peak of snow melting. The aridity index and water deficit generally increase in the

  12. Rapid subsidence over oil fields measured by SAR

    NASA Technical Reports Server (NTRS)

    Fielding, E. J.; Blom, R. G.; Goldstein, R. M.

    1998-01-01

    The Lost Hills and Belridge oil felds are in the San Joaquin Valley, California. The major oil reservoir is high porosity and low permeability diatomite. Extraction of large volumes from shallow depths causes reduction in pore pressure and subsequent compaction, forming a surface subsidence bowl. We measure this subsidence from space using interferometric analysis of SAR (Synthetic Aperture Radar) data collected by the European Space Agency Remote Sensing Satellites (ERS-1 and ERS-2). Maximum subsidence rates are as high as 40 mm in 35 days or > 400 mm/yr, measured from interferograms with time separations ranging from one day to 26 months. The 8- and 26-month interferograms contain areas where the subsidence gradient exceeds the measurement possible with ERS SAR, but shows increased detail in areas of less rapid subsidence. Synoptic mapping of subsidence distribution from satellite data powerfully complements ground-based techniques, permits measurements where access is difficult, and aids identification of underlying causes.

  13. Are BVOC exchanges in agricultural ecosystems overestimated? Insights from fluxes measured in a maize field over a whole growing season

    NASA Astrophysics Data System (ADS)

    Bachy, Aurélie; Aubinet, Marc; Schoon, Niels; Amelynck, Crist; Bodson, Bernard; Moureaux, Christine; Heinesch, Bernard

    2016-04-01

    Although maize is the second most important crop worldwide, and the most important C4 crop, no study on biogenic volatile organic compounds (BVOCs) has yet been conducted on this crop at ecosystem scale and over a whole growing season. This has led to large uncertainties in cropland BVOC emission estimations. This paper seeks to fill this gap by presenting, for the first time, BVOC fluxes measured in a maize field at ecosystem scale (using the disjunct eddy covariance by mass scanning technique) over a whole growing season in Belgium. The maize field emitted mainly methanol, although exchanges were bi-directional. The second most exchanged compound was acetic acid, which was taken up mainly in the growing season. Bi-directional exchanges of acetaldehyde, acetone and other oxygenated VOCs also occurred, whereas the terpenes, benzene and toluene exchanges were small, albeit significant. Surprisingly, BVOC exchanges were of the same order of magnitude on bare soil and on well developed vegetation, suggesting that soil is a major BVOC reservoir in agricultural ecosystems. Quantitatively, the maize BVOC emissions observed were lower than those reported in other maize, crops and grasses studies. The standard emission factors (SEFs) estimated in this study (231 ± 19 µg m-2 h-1 for methanol, 8 ± 5 µg m-2 h-1 for isoprene and 4 ± 6 µg m-2 h-1 for monoterpenes) were also much lower than those currently used by models for C4 crops, particularly for terpenes. These results suggest that maize fields are small BVOC exchangers in north-western Europe, with a lower BVOC emission impact than that modelled for growing C4 crops in this part of the world. They also reveal the high variability in BVOC exchanges across world regions for maize and suggest that SEFs should be estimated for each region separately.

  14. Phase-field modelling of rapid solidification in alloy systems: Spontaneous grain refinement effects

    NASA Astrophysics Data System (ADS)

    Mullis, A. M.

    2012-07-01

    Phase-field modelling of rapid alloy solidification, in which the rejection of latent heat from the growing solid cannot be ignored, has lagged significantly behind the modelling of conventional casting practises which can be approximated as isothermal. This is in large part due to the fact that if realistic materials properties are adopted the ratio of the thermal to solute diffusivity (the Lewis number) is typically 103 - 104, leading to severe multi-scale problems. However, use of state-of-the-art numerical techniques such as local mesh adaptivity, implicit time-stepping and a non-linear multi-grid solver allow these difficulties to be overcome. Here we describe how the application of this model, formulated in the thin-interface limit, can help to explain the long-standing phenomenon of spontaneous grain refinement in deeply undercooled melts. We find that at intermediate undercoolings the operating point parameter, σ*, may collapse to zero, resulting in the growth of non-dendritic morphologies such as doublons and 'dendritic seaweed'. Further increases in undercooling then lead to the re-establishment of stable dendritic growth. We postulate that remelting of such seaweed structures gives rise to the low undercooling instance of grain refinement observed in alloys.

  15. Rapid, learning-induced inhibitory synaptogenesis in murine barrel field

    PubMed Central

    Jasinska, M.; Siucinska, E.; Cybulska-Klosowicz, A.; Pyza, E.; Furness, D.N.; Kossut, M.; Glazewski, S.

    2010-01-01

    The structure of neurones changes during development and in response to injury or alteration in sensory experience. Changes occur in the number, shape and dimensions of dendritic spines together with their synapses. However, precise data on these changes in response to learning are sparse. Here, we show using quantitative transmission electron microscopy that a simple form of learning involving mystacial vibrissae results in about 70% increase in the density of inhibitory synapses on spines of neurones located in layer IV barrels that represent the stimulated vibrissae. The spines contain one asymmetrical (excitatory) and one symmetrical (inhibitory) synapse (double-synapse spines) and their density increases 3-fold due to learning with no apparent change in the density of asymmetrical synapses. This effect seems to be specific for learning as pseudoconditioning (where the conditioned and unconditioned stimuli are delivered at random) does not lead to the enhancement of symmetrical synapses, but instead results in an up-regulation of asymmetrical synapses on spines. Symmetrical synapses of cells located in barrels receiving the conditioned stimulus show also a greater concentration of γ-amino-butyric acid (GABA) in their presynaptic terminals. These results indicate that the immediate effect of classical conditioning in the ‘conditioned’ barrels is rapid, pronounced and inhibitory. PMID:20089926

  16. Effect of high magnetic field on a quasi-3D silver dendrite growing system

    NASA Astrophysics Data System (ADS)

    Tang, Fengzhi; Katsuki, Akio; Tanimoto, Yoshifumi

    2006-05-01

    The Ag+/Cu liquid-solid redox reaction was investigated in a vertical and inhomogeneous high magnetic field (up to 15 T). According to a comparison between the morphologies of quasi-3D silver dendrites generated under different magnetic flux densities, the imposition of a high magnetic field strongly affected the aggregation process of the silver dendrites. The present experiment used four kinds of liquid-solid boundaries, which are affected by the reaction direction and solution condition, as bases for the diffusion limited aggregation (DLA)-like dendritic growth of silver deposition. Results are interpreted in terms of convections of the aqueous solution and a tentative quantitative analysis of forces acting on particles arising from the magnetic field. A new force is predicted theoretically and is discussed in detail.

  17. Rapid magnetic microfluidic mixer utilizing AC electromagnetic field.

    PubMed

    Wen, Chih-Yung; Yeh, Cheng-Peng; Tsai, Chien-Hsiung; Fu, Lung-Ming

    2009-12-01

    This paper presents a novel simple micromixer based on stable water suspensions of magnetic nanoparticles (i.e. ferrofluids). The micromixer chip is built using standard microfabrication and simple soft lithography, and the design can be incorporated as a subsystem into any chemical microreactor or a miniaturized biological sensor. An electromagnet driven by an AC power source is used to induce transient interactive flows between a ferrofluid and Rhodamine B. The alternative magnetic field causes the ferrofluid to expand significantly and uniformly toward Rhodamine B, associated with a great number of extremely fine fingering structures on the interface in the upstream and downstream regions of the microchannel. These pronounced fingering patterns, which have not been observed by other active mixing methods utilizing only magnetic force, increase the mixing interfacial length dramatically. Along with the dominant diffusion effects occurring around the circumferential regions of the fine finger structures, the mixing efficiency increases significantly. The miscible fingering instabilities are observed and applied in the microfluidics for the first time. This work is carried with a view to developing functionalized ferrofluids that can be used as sensitive pathogen detectors and the present experimental results demonstrate that the proposed micromixer has excellent mixing capabilities. The mixing efficiency can be as high as 95% within 2.0 s and a distance of 3.0 mm from the inlet of the mixing channel, when the applied peak magnetic field is higher than 29.2 Oe and frequency ranges from 45 to 300 Hz. PMID:19921677

  18. Planetary Nebulae: Reviews and Previews of a Rapidly Evolving Field

    NASA Astrophysics Data System (ADS)

    Balick, Bruce

    2015-01-01

    Observational results from the ground and space in the past decade and covering the entire spectrum have jolted and energized research into the nature, the formation, and the evolution of planetary nebulae (PNs). The 101-level bubble structure of PNs turned out to be a pleasant but misleading fantasy as observations by HST and ALMA revealed basic details of their infancy. Some combination of close geriatric binary stars (the precusrors of SN Ia's) and magnetic fields dredged into the dusty winds appear to play vital roles in the ejection and collimation of AGB atmospheres. As a result, PNe and their antecedents, AGB stars and prePNs, are providing an array of new opportunities to study asymmetric wind formation, complex gas dynamics, CNO production rates in various galactic environments, and galaxy structure and evolution. I shall review the highlights of recent results, summarize their interpretations, and show some of the observational opportunities to monitor in the next decade, many of which couple strongly to research to related fields.This talk is dedicated to the career of Olivier Chesneau (1972-2014) who pioneered new high-resolution imaging methods that peered into the deep inner cores of nascent planetary nebulae. We remember Olivier as everyone's enthusiastic friend and colleague whose career ended in full stride.

  19. Pitch-angle diffusion of electrons through growing and propagating along a magnetic field electromagnetic wave in Earth's radiation belts

    SciTech Connect

    Choi, C.-R. Dokgo, K.; Min, K.-W.; Woo, M.-H.; Choi, E.-J.; Hwang, J.; Park, Y.-D.; Lee, D.-Y.

    2015-06-15

    The diffusion of electrons via a linearly polarized, growing electromagnetic (EM) wave propagating along a uniform magnetic field is investigated. The diffusion of electrons that interact with the growing EM wave is investigated through the autocorrelation function of the parallel electron acceleration in several tens of electron gyration timescales, which is a relatively short time compared with the bounce time of electrons between two mirror points in Earth's radiation belts. Furthermore, the pitch-angle diffusion coefficient is derived for the resonant and non-resonant electrons, and the effect of the wave growth on the electron diffusion is discussed. The results can be applied to other problems related to local acceleration or the heating of electrons in space plasmas, such as in the radiation belts.

  20. Short term effects on bone quality associated with consumption of soy protein isolate and other dietary protein sources in rapidly growing female rats.

    PubMed

    Chen, Jin-Ran; Singhal, Rohit; Lazarenko, Oxana P; Liu, Xiaoli; Hogue, William R; Badger, Thomas M; Ronis, Martin J J

    2008-11-01

    Beneficial effects of soy protein consumption on bone quality have been reported. The effects of other dietary protein sources such as whey protein hydrolysate (WPH) and rice protein isolate (RPI) on bone growth have been less well examined. The current study compared effects of feeding soy protein isolate (SPI), WPH and RPI for 14 d on tibial bone mineral density (BMD) and bone mineral content (BMC) in intact and ovariectomized (OVX) rapidly growing female rats relative to animals fed casein (CAS). The effects of estrogenic status on responses to SPI were also explored. Tibial peripheral quantitative computerized tomography (pQCT) showed all three protein sources had positive effects on either BMD or BMC relative to CAS (P < 0.05), but SPI had greater effects in both intact and OVX female rats. SPI and E2 had positive effects on BMD and BMC in OVX rats (P < 0.05). However, trabecular BMD was lower in a SPI + E2 group compared to a CAS + E2 group. In OVX rats, SPI increased serum bone formation markers, and serum from SPI-fed rats stimulated osteoblastogenesis in ex vivo. SPI also suppressed the bone resorption marker RatLaps (P < 0.05). Both SPI and E2 increased alkaline phosphatase gene expression in bone, but only SPI decreased receptor activator of nuclear factor-kappaB ligand (RANKL) and estrogen receptor gene expression (P < 0.05). These data suggest beneficial bone effects of a soy diet in rapidly growing animals and the potential for early soy consumption to increase peak bone mass. PMID:18703746

  1. A rapid estimation of near field tsunami run-up

    USGS Publications Warehouse

    Riqueime, Sebastian; Fuentes, Mauricio; Hayes, Gavin; Campos, Jamie

    2015-01-01

    Many efforts have been made to quickly estimate the maximum run-up height of tsunamis associated with large earthquakes. This is a difficult task, because of the time it takes to construct a tsunami model using real time data from the source. It is possible to construct a database of potential seismic sources and their corresponding tsunami a priori.However, such models are generally based on uniform slip distributions and thus oversimplify the knowledge of the earthquake source. Here, we show how to predict tsunami run-up from any seismic source model using an analytic solution, that was specifically designed for subduction zones with a well defined geometry, i.e., Chile, Japan, Nicaragua, Alaska. The main idea of this work is to provide a tool for emergency response, trading off accuracy for speed. The solutions we present for large earthquakes appear promising. Here, run-up models are computed for: The 1992 Mw 7.7 Nicaragua Earthquake, the 2001 Mw 8.4 Perú Earthquake, the 2003Mw 8.3 Hokkaido Earthquake, the 2007 Mw 8.1 Perú Earthquake, the 2010 Mw 8.8 Maule Earthquake, the 2011 Mw 9.0 Tohoku Earthquake and the recent 2014 Mw 8.2 Iquique Earthquake. The maximum run-up estimations are consistent with measurements made inland after each event, with a peak of 9 m for Nicaragua, 8 m for Perú (2001), 32 m for Maule, 41 m for Tohoku, and 4.1 m for Iquique. Considering recent advances made in the analysis of real time GPS data and the ability to rapidly resolve the finiteness of a large earthquake close to existing GPS networks, it will be possible in the near future to perform these calculations within the first minutes after the occurrence of similar events. Thus, such calculations will provide faster run-up information than is available from existing uniform-slip seismic source databases or past events of pre-modeled seismic sources.

  2. A rapid estimation of near-field tsunami runup

    NASA Astrophysics Data System (ADS)

    Riquelme, Sebastián.; Fuentes, Mauricio; Hayes, Gavin P.; Campos, Jaime

    2015-09-01

    Many efforts have been made to quickly estimate the maximum runup height of tsunamis associated with large earthquakes. This is a difficult task because of the time it takes to construct an accurate tsunami model using real-time data from the source. It is possible to construct a database of potential seismic sources and their corresponding tsunami a priori. However, such models are generally based on uniform slip distributions and thus oversimplify the knowledge of the earthquake source. Here we show how to predict tsunami runup from any seismic source model using an analytic solution that is specifically designed for subduction zones with a well-defined geometry, i.e., Chile, Japan, Nicaragua, and Alaska. The main idea of this work is to provide a tool for emergency response, trading off accuracy for speed. The solutions we present for large earthquakes appear promising. Here runup models are computed for the following: the 1992 Mw 7.7 Nicaragua earthquake, the 2001 Mw 8.4 Perú earthquake, the 2003 Mw 8.3 Hokkaido earthquake, the 2007 Mw 8.1 Perú earthquake, the 2010 Mw 8.8 Maule earthquake, the 2011 Mw 9.0 Tohoku earthquake, and the recent 2014 Mw 8.2 Iquique earthquake. The maximum runup estimations are consistent with measurements made inland after each event, with a peak of 9 m for Nicaragua, 8 m for Perú (2001), 32 m for Maule, 41 m for Tohoku, and 4.1 m for Iquique. Considering recent advances made in the analysis of real-time GPS data and the ability to rapidly resolve the finiteness of a large earthquake close to existing GPS networks, it will be possible in the near future to perform these calculations within the first minutes after the occurrence of similar events. Thus, such calculations will provide faster runup information than is available from existing uniform-slip seismic source databases or past events of premodeled seismic sources.

  3. Expression of two PIP genes in rapidly growing internodes of rice is not primarily controlled by meristem activity or cell expansion.

    PubMed

    Malz, S; Sauter, M

    1999-08-01

    Membrane intrinsic proteins facilitate movement of small molecules often times functioning as water channels. We have identified two genes from rice which encode proteins with characteristic features of plasma membrane intrinsic proteins (PIP). They possess six membrane-spanning domains, an NPA repeat, overall high sequence homologies and characteristic C- and N-terminal hallmark motifs which allowed assignment of OsPIP1a to the PIP1 subfamily and of OsPIP2a to the PIP2 subfamily. OsPIP1a and OsPIP2a showed similar but not identical expression patterns. The two genes were expressed at higher levels in seedlings than in adult plants and expression in the primary root was regulated by light. In internodes of deepwater rice plants which were induced to grow rapidly by submergence, transcript levels were slightly induced in the intercalary meristem (IM) and slightly reduced in the elongation zone (EZ) after 18 h. In internodes of GA-induced excised stem sections transcript levels transiently declined in the IM and EZ after 1 h and subsequently recovered to elevated levels after 18 h. GA also induced OsPIP expression in non-growing tissue after 18 h. In the IM of submergence-induced stem sections transcript levels remained constitutive. The different growth-promoting treatments showed no direct correlation between growth rate and OsPIP gene expression in dividing or expanding cells. In fact, treatment of excised stem sections with ABA or drought stress induced similar changes in OsPIP expression in the growing zone during the first 6 h as GA did. We conclude that regulation of OsPIP1a and OsPIP2a expression is not primarily controlled by growth. GA-induced growth may however change the water status of cells which in turn results in altered PIP abundance. PMID:10527423

  4. RAPID ARSENITE OXIDATION BY THERMUS AQUATICUS AND THERMUS THERMOPHILUS: FIELD AND LABORATORY INVESTIGATIONS. (R826189)

    EPA Science Inventory

    Thermus aquaticus and Thermus thermophilus, common inhabitants of terrestrial hot springs and thermally polluted domestic and industrial waters, have been found to rapidly oxidize arsenite to arsenate. Field investigations at a hot spring in Yellowstone National Park revealed ...

  5. Metal contamination of soil and translocation in vegetables growing under industrial wastewater irrigated agricultural field of Vadodara, Gujarat, India.

    PubMed

    Tiwari, K K; Singh, N K; Patel, M P; Tiwari, M R; Rai, U N

    2011-09-01

    The present investigation was carried out to evaluate metals concentration in ten vegetable crops growing in mixed industrial effluent irrigated agricultural field near Vadodara, Gujarat, India. Differential accumulation and translocation of various metals in selected vegetables plant species was observed. A higher concentration of metals were found in order of Fe>Mn>Zn>Cd>Cu>Pb>Cr>As in soil irrigated with industrial effluent than soil irrigated with tube well water; however, the concentration of As, Cr and Pb found below detection limit in tube well water irrigated soil. Metal accumulation in root and top of vegetables varied significantly both in relations to metal concentration in the soil and the plant genotype. Among ten vegetable species studied five vegetable species, i.e. Spinach, Radish, Tomato, Chili and Cabbage growing in mixed industrial effluent irrigated agricultural field showed high accumulation and translocation of toxic metals (As, Cd, Cr, Pb and Ni) in their edible parts, thus, their cultivation are unsafe with respect to possible transfer in food chain and health hazards. However, it is suggested that vegetable crops restricting toxic metal in non-edible port may be recommended for cultivation in such metal contaminated agricultural field. PMID:21555153

  6. [Prolonged remission achieved by using bevacizumab plus paclitaxel therapy combined with sequential radiotherapy for a rapidly growing chest wall recurrence of triple negative breast cancer - a case report].

    PubMed

    Kawashima, Masahiro; Fujii, Kazuhiro; Kiso, Marina; Takeyama, Osamu; Kan, Shugen; Tanaka, Mitsuru

    2015-01-01

    A 73-year-old woman, who was diagnosed with right triple negative breast cancer (cT1cN1M0, stage I ) and underwent right modified radical mastectomy with axillary lymph node dissection, showed recurrent disease in the right parasternal lymph node 4 years after the operation. Computed tomography (CT) revealed rapid growth of the tumor along with pain, accompanied by the destruction of the sternal bone. Five cycles of bevacizumab plus paclitaxel (BEV+wPTX) treatment (10 mg/kg of bevacizumab on days 1 and 15 plus 90 mg/m² of paclitaxel on days 1, 8, and 15 every 4 weeks)achieved remarkable tumor regression. Parasternal irradiation (30 Gy/15 Fr) followed by oral capecitabine treatment (600 mg b. i. d; 3 week administration followed by a week of rest) as maintenance therapy showed complete tumor regression and helped to achieve good quality of life (QOL) without any unfavorable symptoms at the 2-year follow-up, although the estimated progression free survival of this treatment is about 6 months. As BEV+wPTX had a high response rate for recurrent breast cancer, its combination with sequential radiotherapy could provide a favorable local control rate and good QOL for patients with rapidly growing, solitary, recurrent breast cancers. PMID:25596684

  7. Quantifying the growing season dynamics and phenology of a boreal black spruce wildfire chronosequence: Coupling field measurements with MODIS

    NASA Astrophysics Data System (ADS)

    Serbin, S. P.; Ahl, D. E.; Gower, S. T.

    2007-12-01

    phenological transition periods of vegetation phenology across the chronosequence for both the in situ and MODIS time series data. In addition, we assessed the uncertainty in these estimates using Monte Carlo simulations to obtain 95% confidence intervals for each modeled transition date. This information is used to examine the effects of temporal aggregation, seasonal cloud and other residual atmospheric effects on determining phenological dates with MODIS. Collectively these data help discern the role warming and increased wildfire have in modifying boreal growing season dynamics while extending our ongoing long-term work to systematically link field measurements, remote sensing and ecosystem modeling to quantify the effects of global change on the carbon budget of boreal forests.

  8. Nested multiplex PCR--a feasible technique to study partial community of arbuscular mycorrhizal fungi in field-growing plant root.

    PubMed

    Dong, Xiuli; Zhao, Bin

    2006-08-01

    Plant can be infected by different arbuscular mycorrhizal fungi, but little is known about the interaction between them within root tissues mainly because different species cannot be distinguished on the basis of fungal structure. Accurate species identification of Arbuscular mycorrhizal fungi (AMF) colonized in plant roots is the cornerstone of mycorrhizal study, yet this fundamental step is impossible through its morphological character alone. For accurate, rapid and inexpensive detection of partial mycorrhizal fungal community in plant roots, a nested multiplex polymerase chain reaction (PCR) was developed in this study. Five discriminating primers designed based on the variable region of the 5' end of the large ribosomal subunit were used in the experiment for testing their specificity and the sensitivity in nested PCR by using spores from Glomus mosseae (BEG12), Glomus intraradices (BEG141), Scutellospora castaneae (BEG1) and two unidentified Glomus sp. HAUO3 and HAUO4. The feasibility assay of nested multiplex PCR was conducted by use of spore mixture, Astragalus sinicum roots co-inoculated with 4 species of arbuscular mycorrhizal fungi from pot cultures and 15 different field-growing plant roots respectively after analyses of the compatibility of primers. The result indicated that the sensitivity was in the same range as that of the corresponding single PCR reaction. Overall accuracy was 95%. The efficiency and sensitivity of this multiplex PCR procedure provided a rapid and easy way to simultaneously detect several of arbuscular mycorrhiza fungal species in a same plant root system. PMID:16989281

  9. Use of Meteosat Second Generation optimal cloud analysis fields for understanding physical attributes of growing cumulus clouds

    NASA Astrophysics Data System (ADS)

    Mecikalski, John R.; Watts, Philip D.; Koenig, Marianne

    2011-10-01

    This study develops an understanding on how retrieved cloud parameter fields from the Optimal Cloud Analysis (OCA) algorithm, operating on Meteosat Second Generation (MSG), Spinning Enhanced Visible and Infrared Imager (SEVIRI) data, behave at 5-min time resolutions for growing cumulus clouds. Fields retrieved by the OCA algorithm include cloud optical thickness (τ), cloud-top particle effective radius (r e), cloud-top pressure (p c), and cloud-top phase. OCA is based on a one-dimensional optimal estimation methodology, and a measure of radiance fit, the cost function (J m), is a quantity developed as part of the retrieval process and is shown to be useful in delineating mixed phase clouds; it too is evaluated (at 5-min intervals) for the information it provides. Data for 94 growing cumulus cloud events are processed. An "event" is defined as a cumulus cloud that is monitored at 5-min intervals with OCA, as it grows from the "fair weather" or "towering cumulus" stage to near the cumulonimbus stage when precipitation begins. The hypothesis is that OCA products are of high-enough quality to provide unique information about microphysical processes occurring at and near cloud top. The goal through analysis of the 94 events is to identify consistent, repeating patterns in OCA fields during cloud growth that can be in turn used to infer physical processes. Data from the Convective and Orographically-induced Precipitation Study (June and July 2007) and in four regions of Europe on 25 May 2009 are used. The validity of the OCA data is presented with a comparison to CloudSat Precipitation Radar and MODerate resolution Imaging Spectroradiometer retrieved cloud properties, showing good statistical agreements. Subsequently, results from the analysis of OCA fields for all events show that as cumuli deepen, r e values tend to increase, and then decrease in size as cloud tops glaciate and particle settling begins. The τ magnitudes generally increase as clouds deepen, while p c

  10. Guidelines for growing perennial grasses for biofuel and bioproducts

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Guidelines for growing perennial grasses for biofuel and bioproducts Rob Mitchell Abstract: Switchgrass, big bluestem, and warm-season grass mixtures provide numerous benefits. Existing field equipment, herbicides, and cultivar improvement promote rapid establishment in the planting year. These gra...

  11. Evaluation of the broth microdilution method using 2,3-diphenyl-5-thienyl-(2)-tetrazolium chloride for rapidly growing mycobacteria susceptibility testing.

    PubMed

    Lee, Sun Min; Kim, Jeong man; Jeong, Joseph; Park, Young Kil; Bai, Gill-Han; Lee, Eun Yup; Lee, Min Ki; Chang, Chulhun L

    2007-10-01

    As the incidence of nontuberculous mycobacterial infection has been increasing recently in Korea, the importance of drug susceptibility test for clinical isolates of mycobacteria has become larger. In this study we determined the antimicrobial susceptibility patterns of clinical isolates of M. fortuitum and M. abscessus in Korea, and evaluated the efficacy of a modified broth microdilution method using 2,3-diphenyl-5-thienyl-(2)-tetrazolium chloride (STC), in terms of its ability to provide accurate and easy-to-read minimal inhibitory concentration (MIC) endpoints for the susceptibility testing of rapidly growing mycobacteria. Most isolates of M. fortuitum and M. abscessus in Korea are susceptible or intermediately susceptible to amikacin, cefoxitin, ciprofloxacin, and clarithromycin. Many isolates of M. fortuitum are susceptible to doxycycline, sulfamethoxazole, and imipenem, while many M. abscessus isolates are resistant to these drugs. In the present study, the modified broth microdilution method using STC was found to be reliable, easy to read, and inexpensive for M. fortuitum and M. abscessus susceptibility testing. The modified colorimetric MIC testing method using STC was proven to be a useful surrogate for RGM antibiotic susceptibility testing. PMID:17982223

  12. Fluid transport by solitary waves along growing faults. A field example from the South Eugene Island Basin, Gulf of Mexico

    NASA Astrophysics Data System (ADS)

    Revil, A.; Cathles, L. M.

    2002-09-01

    The Red Fault system is one of the main growth faults found in the South Eugene Island Basin, a salt withdrawal minibasin located offshore Louisiana, in the Gulf of Mexico. This fault system corresponds to a lateral boundary between fluid overpressured compartments. In addition, there is a set of observations indicating that the Red Fault system exhibits rapid episodic migration of fluids. This fault represents an example of preferential pathway for the upward episodic migration of overpressured hydrocarbons from deep, heavily pressured, compartments on time scales of years. The migrations of fluids into active growing faults could take the form of propagating surges (solitary waves) that propagate upward along the fault planes in a wave-like manner at km/yr. Solitary waves represent a very efficient mechanism for the upward transport of fluids along growth faults in sedimentary basins generating its own permeability. In addition, this mechanism is compatible with the fact that the fault plane is observed to sustain a static pore fluid pressure difference between its two sides. The propagation of solitary waves in active growth faults appears as a fundamental mechanism to understand the nature of upward fast migration of fluids along active growth faults in compartimentalized sedimentary basins.

  13. Total dural irradiation: RapidArc versus static-field IMRT: A case study

    SciTech Connect

    Kelly, Paul J.

    2012-07-01

    The purpose of this study was to compare conventional fixed-gantry angle intensity-modulated radiation therapy (IMRT) with RapidArc for total dural irradiation. We also hypothesize that target volume-individualized collimator angles may produce substantial normal tissue sparing when planning with RapidArc. Five-, 7-, and 9-field fixed-gantry angle sliding-window IMRT plans were generated for comparison with RapidArc plans. Optimization and normal tissue constraints were constant for all plans. All plans were normalized so that 95% of the planning target volume (PTV) received at least 100% of the dose. RapidArc was delivered using 350 Degree-Sign clockwise and counterclockwise arcs. Conventional collimator angles of 45 Degree-Sign and 315 Degree-Sign were compared with 90 Degree-Sign on both arcs. Dose prescription was 59.4 Gy in 33 fractions. PTV metrics used for comparison were coverage, V{sub 107}%, D1%, conformality index (CI{sub 95}%), and heterogeneity index (D{sub 5}%-D{sub 95}%). Brain dose, the main challenge of this case, was compared using D{sub 1}%, Dmean, and V{sub 5} Gy. Dose to optic chiasm, optic nerves, globes, and lenses was also compared. The use of unconventional collimator angles (90 Degree-Sign on both arcs) substantially reduced dose to normal brain. All plans achieved acceptable target coverage. Homogeneity was similar for RapidArc and 9-field IMRT plans. However, heterogeneity increased with decreasing number of IMRT fields, resulting in unacceptable hotspots within the brain. Conformality was marginally better with RapidArc relative to IMRT. Low dose to brain, as indicated by V5Gy, was comparable in all plans. Doses to organs at risk (OARs) showed no clinically meaningful differences. The number of monitor units was lower and delivery time was reduced with RapidArc. The case-individualized RapidArc plan compared favorably with the 9-field conventional IMRT plan. In view of lower monitor unit requirements and shorter delivery time, Rapid

  14. A field-deployable device for the rapid detection of cyanide poisoning in whole blood

    NASA Astrophysics Data System (ADS)

    Boehringer, Hans; Tong, Winnie; Chung, Roy; Boss, Gerry; O'Farrell, Brendan

    2012-06-01

    Feasibility of a field-deployable device for the rapid and early diagnosis of cyanide poisoning in whole blood using the spectral shift of the vitamin B12 precursor cobinamide upon binding with cyanide as an indicator is being assessed. Cyanide is an extremely potent and rapid acting poison with as little as 50 mg fatal to humans. Cyanide poisoning has been recognized as a threat from smoke inhalation and potentially through weapons of mass destruction. Currently, no portable rapid tests for the detection of cyanide in whole blood are available. Cobinamide has an extremely high affinity for cyanide and captures hemoglobin associated cyanide from red blood cells. Upon binding of cyanide, cobinamide undergoes a spectral shift that can be measured with a spectrophotometer. We have combined the unique cyanide-binding properties of cobinamide with blood separation technology, sample transport and a detection system, and are developing a rapid, field deployable, disposable device which will deliver an intuitive result to a first responder, allowing for rapid response to exposure events. Feasibility of the cobinamide-Cyanide chemistry in a rapid test using a whole blood sample from a finger-stick has been demonstrated with an assay time from sample collection to a valid result of under 5 minutes. Data showing the efficacy of the diagnostic method and initial device design concepts will be shown.

  15. Diversity, Community Composition, and Dynamics of Nonpigmented and Late-Pigmenting Rapidly Growing Mycobacteria in an Urban Tap Water Production and Distribution System

    PubMed Central

    Dubrou, S.; Konjek, J.; Macheras, E.; Welté, B.; Guidicelli, L.; Chignon, E.; Joyeux, M.; Gaillard, J. L.; Heym, B.; Tully, T.

    2013-01-01

    Nonpigmented and late-pigmenting rapidly growing mycobacteria (RGM) have been reported to commonly colonize water production and distribution systems. However, there is little information about the nature and distribution of RGM species within the different parts of such complex networks or about their clustering into specific RGM species communities. We conducted a large-scale survey between 2007 and 2009 in the Parisian urban tap water production and distribution system. We analyzed 1,418 water samples from 36 sites, covering all production units, water storage tanks, and distribution units; RGM isolates were identified by using rpoB gene sequencing. We detected 18 RGM species and putative new species, with most isolates being Mycobacterium chelonae and Mycobacterium llatzerense. Using hierarchical clustering and principal-component analysis, we found that RGM were organized into various communities correlating with water origin (groundwater or surface water) and location within the distribution network. Water treatment plants were more specifically associated with species of the Mycobacterium septicum group. On average, M. chelonae dominated network sites fed by surface water, and M. llatzerense dominated those fed by groundwater. Overall, the M. chelonae prevalence index increased along the distribution network and was associated with a correlative decrease in the prevalence index of M. llatzerense, suggesting competitive or niche exclusion between these two dominant species. Our data describe the great diversity and complexity of RGM species living in the interconnected environments that constitute the water production and distribution system of a large city and highlight the prevalence index of the potentially pathogenic species M. chelonae in the distribution network. PMID:23835173

  16. Tetracycline Resistance and Presence of Tetracycline Resistance Determinants tet(V) and tap in Rapidly Growing Mycobacteria from Agricultural Soils and Clinical Isolates

    PubMed Central

    Kyselková, Martina; Chron̂áková, Alica; Volná, Lucie; Nêmec, Jan; Ulmann, Vít; Scharfen, Josef; Elhottová, Dana

    2012-01-01

    Rapidly growing mycobacteria (RGM) inhabit soil and water but certain strains represent a health risk for human and animals. Both clinical and soil RGM may be under selection pressure for resistance to tetracycline (TET) antibiotics, since tetracyclines are administrated to humans and farm animals, and TET residues enter soil through manuring; however, resistance to TET and the presence of TET-resistance genes have been assessed only in clinical isolates. We were therefore interested in comparing soil and clinical RGM in terms of TET resistance and the presence of TET-resistance genes. We used 44 RGM from grasslands with different exposure to animal manure, and 38 clinical RGM from Czech hospitals. There was no difference between the clinical and soil isolates in TET resistance, with >50% resistant isolates in both groups. otr(A), otr(B), tet(K), tet(L) or tet(M) were not detected in any soil or clinical isolate. In contrast, most isolates harbored tet(V) and tap, both encoding mycobacterial efflux pumps, including species where these genes have never been evidenced before. The phylogeny of tet(V) correlated with isolates’ BOX-PCR profiles, suggesting that this gene evolved along with mycobacterial genomes as a part of the intrinsic resistome. In certain cases, tet(V) and/or tap were found in TET-sensitive isolates, or inversely, were not found in resistant strains. Concluding, intrinsic efflux pumps may be more important for TET resistance than horizontally transferred genes in both soil and clinical RGM. Their simple presence, however, does not attest to resistance, and therefore their diversity, function and expression merit further research. PMID:22673307

  17. Rapid field assessment of RO desalination of brackish agricultural drainage water.

    PubMed

    Thompson, John; Rahardianto, Anditya; Gu, Han; Uchymiak, Michal; Bartman, Alex; Hedrick, Marcos; Lara, David; Cooper, Jim; Faria, Jose; Christofides, Panagiotis D; Cohen, Yoram

    2013-05-15

    Rapid field evaluation of RO feed filtration requirements, selection of effective antiscalant type and dose, and estimation of suitable scale-free RO recovery level were demonstrated using a novel approach based on direct observation of mineral scaling and flux decline measurements, utilizing an automated Membrane Monitor (MeMo). The MeMo, operated in a stand-alone single-pass desalting mode, enabled rapid assessment of the adequacy of feed filtration by enabling direct observation of particulate deposition on the membrane surface. The diagnostic field study with RO feed water of high mineral scaling propensity revealed (via direct MeMo observation) that suspended particulates (even for feed water of turbidity <1 NTU) could serve as seeds for promoting surface crystal nucleation. With feed filtration optimized, a suitable maximum RO water recovery, with complete mineral scale suppression facilitated by an effective antiscalant dose, can be systematically and directly identified (via MeMo) in the field for a given feed water quality. Scale-free operating conditions, determined via standalone MeMo rapid diagnostic tests, were shown to be applicable to spiral-would RO system as validated via both flux decline measurements and ex-situ RO plant membrane scale monitoring. It was shown that the present approach is suitable for rapid field assessment of RO operability and it is particularly advantageous when evaluating water sources of composition that may vary both temporally and across the regions of interest. PMID:23538039

  18. Rapid Field Measurement of Dissolved Inorganic Carbon Based on CO{sub 2} Analysis

    SciTech Connect

    VESPER, DJ, Edenborn, Harry

    2012-01-01

    Dissolved inorganic carbon (DIC) is commonly measured in water and is an important parameter for understanding carbonate equilibrium, carbon cycling, and water-rock interaction. While accurate measurements can be made in the analytical laboratory, we have developed a rapid, portable technique that can be used to obtain accurate and precise data in the field as well.

  19. Photometric light curves for ten rapidly rotating stars in Alpha Persei, the Pleiades, and the field

    NASA Technical Reports Server (NTRS)

    Prosser, Charles F.; Schild, Rudolph E.; Stauffer, John R.; Jones, Burton F.

    1993-01-01

    We present the results from a photometric monitoring program of ten rapidly rotating stars observed during 1991 using the FLWO 48-in. telescope. Brightness variations for an additional six cluster stars observed with the Lick 40-in. telescope are also given. The periods and light curves for seven Alpha Persei members, two Pleiades members, and one naked T Tauri field star are reported.

  20. Rapid, Non-Destructive Estimation of Leaf Area on Field-Grown Vitis labruscana Grapevines

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Three potential variables, shoot basal diameter, leaf count per shoot and shoot length, were examined as potential rapid, non-destructive methods for estimating leaf area per shoot, a frequent component of estimates of leaf area per vine. The metrics were recorded in large field-grown vines over fi...

  1. Quantitative Imaging of Rapidly Decaying Evanescent Fields Using Plasmonic Near-Field Scanning Optical Microscopy

    PubMed Central

    Zhang, Zhen; Ahn, Phillip; Dong, Biqin; Balogun, Oluwaseyi; Sun, Cheng

    2013-01-01

    Non-propagating evanescent fields play an important role in the development of nano-photonic devices. While detecting the evanescent fields in far-field can be accomplished by coupling it to the propagating waves, in practice they are measured in the presence of unwanted propagating background components. It leads to a poor signal-to-noise ratio and thus to errors in quantitative analysis of the local evanescent fields. Here we report on a plasmonic near-field scanning optical microscopy (p-NSOM) technique that incorporates a nanofocusing probe for adiabatic focusing of propagating surface plasmon polaritons at the probe apex, and for enhanced coupling of evanescent waves to the far-field. In addition, a harmonic demodulation technique is employed to suppress the contribution of the background. Our experimental results show strong evidence of background free near-field imaging using the new p-NSOM technique. Furthermore, we present measurements of surface plasmon cavity modes, and quantify their contributing sources using an analytical model. PMID:24076563

  2. Standing Helicon Wave Induced by a Rapidly Bent Magnetic Field in Plasmas.

    PubMed

    Takahashi, Kazunori; Takayama, Sho; Komuro, Atsushi; Ando, Akira

    2016-04-01

    An electron energy probability function and a rf magnetic field are measured in a rf hydrogen helicon source, where axial and transverse static magnetic fields are applied to the source by solenoids and to the diffusion chamber by filter magnets, respectively. It is demonstrated that the helicon wave is reflected by the rapidly bent magnetic field and the resultant standing wave heats the electrons between the source and the magnetic filter, while the electron cooling effect by the magnetic filter is maintained. It is interpreted that the standing wave is generated by the presence of a spatially localized change of a refractive index. PMID:27081982

  3. Draft Genome Sequences of Five Rapidly Growing Mycobacterium Species, M. thermoresistibile, M. fortuitum subsp. acetamidolyticum, M. canariasense, M. brisbanense, and M. novocastrense

    PubMed Central

    Katahira, Katsuyuki; Ogura, Yoshitoshi; Gotoh, Yasuhiro

    2016-01-01

    We report here the draft genome sequences of five rapidly growing Mycobacterium (RGM) species potentially pathogenic to humans, M. thermoresistibile, M. fortuitum subsp. acetamidolyticum, M. canariasense, M. brisbanense, and M. novocastrense. As the clinical importance of RGMs is increasingly being recognized worldwide, these sequences would contribute to further advances in RGM research. PMID:27231354

  4. Rapid high temperature field test method for evaluation of geothermal calcite scale inhibitors

    SciTech Connect

    Asperger, R.G.

    1982-08-01

    A test method is described which allows the rapid field testing of calcite scale inhibitors in high- temperature geothermal brines. Five commercial formulations, chosen on the basis of laboratory screening tests, were tested in brines with low total dissolved solids at ca 500 F. Four were found to be effective; of these, 2 were found to be capable of removing recently deposited scale. One chemical was tested in the full-flow brine line for 6 wks. It was shown to stop a severe surface scaling problem at the well's control valve, thus proving the viability of the rapid test method. (12 refs.)

  5. Flood hazard and a rapidly growing capital in the floodplain: Social response on major 18th-century Danube floods in Pest (East-Budapest)

    NASA Astrophysics Data System (ADS)

    Kiss, Andrea

    2014-05-01

    Due to its floodplain location, Pest was especially prone to damages caused by great flood events. Before water regulation works, the greatest flood events, and the highest rate of destruction occurred during ice jam floods. Whereas in the first half of the 18th century Pest is restricted to the medieval downtown located on a higher terrain (Danube terrace), from the mid 18th century onwards the rapidly growing population established suburbs around the downtown in the lower-lying flood plain. Thus, while in the first half of the century floods were more dangerous for the harvest in the agricultural lands, in the second half of the century at the same place suburbs, urban areas with thousands of inhabitants were prone to the same danger. In the first half of the century at least three particularly large flood events, in 1712, 1732 and 1744, caused increasing problems in the close vicinity of the town (and its lands), the second half of the century - as part of a climatic anomaly (Maldá) famous of its weather extremes - was characterised by two extreme (in 1775 and 1799), at least two larger (1789 and 1795) and some more, medium-sized ice jam floods. While in terms of damaged houses the loss was only some dozens in the early part of the century, several hundreds of houses - actually, complete suburbs were erased by floods in 1775 and 1799. In the poster presentation a series of known damaging 18th-century floods, occurred at Pest, is presented, the short-term impacts (e.g. damages), and medium-, long-term administrative responses as well as related long-term landscape changes influenced by floods and flood protection are discussed. Another important aim of the poster is to present the main reasons why in the 18th century these great ice jam floods caused much greater damages (e.g. percentage of collapsed houses in suburbs) in Pest protected by dams than, for example, in the Buda suburbs with no dams, partly also located in high flood-risk areas, in the immediate

  6. Solute trapping in rapid solidification of a binary dilute system: a phase-field study.

    PubMed

    Galenko, P K; Abramova, E V; Jou, D; Danilov, D A; Lebedev, V G; Herlach, D M

    2011-10-01

    The phase-field model of Echebarria, Folch, Karma, and Plapp [Phys. Rev. E 70, 061604 (2004)] is extended to the case of rapid solidification in which local nonequilibrium phenomena occur in the bulk phases and within the diffuse solid-liquid interface. Such an extension leads to the fully hyperbolic system of equations given by the atomic diffusion equation and the phase-field equation of motion. This model is applied to the problem of solute trapping, which is accompanied by the entrapment of solute atoms beyond chemical equilibrium by a rapidly moving interface. The model predicts the beginning of complete solute trapping and diffusionless solidification at a finite solidification velocity equal to the diffusion speed in bulk liquid. PMID:22181123

  7. Onset of rapid mass loss in cool giant stars - Magnetic field effects

    NASA Technical Reports Server (NTRS)

    Mullan, D. J.

    1982-01-01

    The possibility that closed magnetic field loops exist in steady state in stellar atmospheres in the HR diagram is examined. A model derived by Pneuman (1968) for helmet streamers in the solar corona is applied using a semi-empirical technique, to find that long-lived closed loops exist only below a certain boundary in the HR diagram. The region below this boundary is occupied by stars which are known to have hot coronae and slow mass loss. It is suggested that rapid mass loss sets in when closed field loops can no longer exist in steady state in the atmosphere.

  8. Phase-field investigation on the non-equilibrium interface dynamics of rapid alloy solidification

    NASA Astrophysics Data System (ADS)

    Choi, Jeong Yun

    The departure from the equilibrium solid concentration at the solid-liquid interface was often observed during rapid solidification. The energetic associated non-equilibrium solute partitioning has been treated in detail, providing possible ranges of interface concentrations for a given growth condition. For analytical description of specific single-phase dendritic and cellular operating point selection, analytical models for solute partitioning under a given set of growth conditions have been developed and widely utilized in most of the theoretical investigations of rapid solidification. However, these solute trapping models are not rigorously verified due to the difficulty in experimentally measuring under rapid growth conditions. Moreover, since these solute trapping models include kinetic parameters which are difficult to directly measure from experiments, application of the solute trapping models or the associated analytic rapid solidification model is limited. These theoretical models for steady state rapid solidification which incorporate the solute trapping models do not describe the interdependency of solute diffusion, interface kinetics, and alloy thermodynamics. This research program is focused on critical issues that represent conspicuous gaps in current understanding of rapid solidification, limiting our ability to predict and control microstructural evolution at high undercooling, where conditions depart significantly from local equilibrium. Through careful application of phase-field modeling, using appropriate thin-interface and anti-trapping corrections and addressing important details such as transient effects and a velocity-dependent numerics, the current analysis provides a reasonable simulation-based picture of non-equilibrium solute partitioning and the corresponding oscillatory dynamics associated with single-phase rapid solidification and show that this method is a suitable means for a self-consistent simulation of transient behavior and

  9. Rapid measurements of heterogeneity in sandstones using low-field nuclear magnetic resonance

    NASA Astrophysics Data System (ADS)

    Mitchell, Jonathan

    2014-03-01

    Sandstone rocks can contain microscopic variations in composition that complicate interpretation of nuclear magnetic resonance (NMR) relaxation time measurements. In this work, methods for assessing the degree of sample heterogeneity are demonstrated in three sandstones. A two-dimensional T1-Δχapp correlation (where Δχapp is the apparent solid/liquid magnetic susceptibility contrast) reveals the microscopic heterogeneity in composition, whilst a spatially resolved T1 profile reveals the macroscopic structural heterogeneity. To perform these measurements efficiently, a rapid measure of longitudinal T1 relaxation time has been implemented on a low-field NMR spectrometer with a magnetic field strength B0=0.3 T. The “double-shot” T1 pulse sequence is appropriate for analysis of porous materials in general. Example relaxation time distributions are presented for doped water phantoms to validate the method. The acquisition time of the double-shot T1 sequence is equivalent to the single-shot Carr-Purcell Meiboom-Gill (CPMG) sequence used routinely in petrophysics to measure transverse T2 relaxation. Rapid T1 measurements enable practical studies of core plugs at magnetic field strengths previously considered inappropriate, as T1 is independent of molecular diffusion through pore-scale (internal) magnetic field gradients.

  10. Are BVOC exchanges in agricultural ecosystems overestimated? Insights from fluxes measured in a maize field over a whole growing season

    NASA Astrophysics Data System (ADS)

    Bachy, Aurélie; Aubinet, Marc; Schoon, Niels; Amelynck, Crist; Bodson, Bernard; Moureaux, Christine; Heinesch, Bernard

    2016-04-01

    Maize is the most important C4 crop worldwide. It is also the second most important crop worldwide (C3 and C4 mixed), and is a dominant crop in some world regions. Therefore, it can potentially influence local climate and air quality through its exchanges of gases with the atmosphere. Among others, biogenic volatile organic compounds (BVOC) are known to influence the atmospheric composition and thereby modify greenhouse gases lifetime and pollutant formation in the atmosphere. However, so far, only two studies have dealt with BVOC exchanges from maize. Moreover, these studies were conducted on a limited range of meteorological and phenological conditions, so that the knowledge of BVOC exchanges by this crop remains poor. Here, we present the first BVOC measurement campaign performed at ecosystem-scale on a maize field during a whole growing season. It was carried out in the Lonzée Terrestrial Observatory (LTO), an ICOS site. BVOC fluxes were measured by the disjunct by mass-scanning eddy covariance technique with a proton transfer reaction mass spectrometer for BVOC mixing ratios measurements. Outstanding results are (i) BVOC exchanges from soil were as important as BVOC exchanges from maize itself; (ii) BVOC exchanges observed on our site were much lower than exchanges observed by other maize studies, even under normalized temperature and light conditions, (iii) they were also lower than those observed on other crops grown in Europe. Lastly (iv), BVOC exchanges observed on our site under standard environmental conditions, i.e., standard emission factors SEF, were much lower than those currently considered by BVOC exchange up-scaling models. From those observations, we deduced that (i) soil BVOC exchanges should be better understood and should be incorporated in terrestrial BVOC exchanges models, and that (ii) SEF for the C4 crop plant functional type cannot be evaluated at global scale but should be determined for each important agronomic and pedo-climatic region

  11. Obesity reduces bone density through activation of PPAR gamma and suppression of Wnt/Beta-Catenin in rapidly growing male rats

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The relationship between obesity and skeletal development remains largely ambiguous. In this report, total enteral nutrition (TEN) was used to feed growing male rats intragastrically, with a high 45% fat diet (HFD) to induce obesity. We found that fat mass was increased (P<0.05) compared to rats fed...

  12. Rapid arsenite oxidation by Thermus aquaticus and Thermus thermophilus: Field and laboratory investigations

    USGS Publications Warehouse

    Gihring, T.M.; Druschel, G.K.; McCleskey, R.B.; Hamers, R.J.; Banfield, J.F.

    2001-01-01

    Thermus aquaticus and Thermus thermophilus, common inhabitants of terrestrial hot springs and thermally polluted domestic and industrial waters, have been found to rapidly oxidize arsenite to arsenate. Field investigations at a hot spring in Yellowstone National Park revealed conserved total arsenic transport and rapid arsenite oxidation occurring within the drainage channel. This environment was heavily colonized by Thermus aquaticus. In laboratory experiments, arsenite oxidation by cultures of Thermus aquaticus YT1 (previously isolated from Yellowstone National Park) and Thermus thermophilus HB8 was accelerated by a factor of over 100 relative to abiotic controls. Thermus aquaticus and Thermus thermophilus may therefore play a large and previously unrecognized role in determining arsenic speciation and bioavailability in thermal environments.

  13. Test plan for preparing the Rapid Transuranic Monitoring Laboratory for field deployment

    SciTech Connect

    McIsaac, C.V.; Sill, C.W.; Gehrke, R.J.; Killian, E.W.; Watts, K.D.

    1994-04-01

    This plan describes experimental work that will be performed during fiscal year 1994 to prepare the Rapid Transuranic Monitoring Laboratory (RTML) for routine field use by US Department of Energy (DOE) Environmental Restoration and Waste Management programs. The RTML is a mobile, field-deployable laboratory developed at the Idaho National Engineering Laboratory (INEL) that provides a rapid, cost-effective means of characterizing and monitoring radioactive waste remediation sites for low-level radioactive contaminants. Analytical instruments currently installed in the RTML include an extended-range, germanium photon analysis spectrometer with an automatic sample changer; two, large-area, ionization chamber alpha spectrometers; and four alpha continuous air monitors. The RTML was field tested at the INEL during June 1993 in conjunction with the Buried Waste Integrated Demonstration`s remote retrieval demonstration. The major tasks described in this test plan are to (a) evaluate the beta detectors for use in screening soil samples for {sup 90}Sr, (b) upgrade the alpha spectral analysis software programs, and (c) upgrade the photon spectral analysis software programs.

  14. Eat, Grow, Lead 4-H: An Innovative Approach to Deliver Campus- Based Field Experiences to Pre-Entry Extension Educators

    ERIC Educational Resources Information Center

    Weeks, Penny Pennington; Weeks, William G.

    2012-01-01

    Eat, Grow, Lead 4-H Club was created as a pilot program for college students seeking to gain experience as non-formal youth educators, specifically serving pre-entry level Extension educators through a university-based 4-H club. Seventeen student volunteers contributed an estimated 630 hours of service to the club during spring 2011. The club…

  15. Comparison of two rapid test procedures with the standard EC test recovery of fecal coliform bacteria from shellfish-growing waters.

    PubMed

    Hunt, D A; Springer, J

    1978-11-01

    A study was conducted to compare recovery and enumeration capability of two 24-hr multitube fermentation tests with the standard EC test for fecal coliform levels in shellfish-growing waters. The 2 tests were the A-1 test developed by Andrews and Presnell, specifying 24-hr incubation in A-1 medium at 44.5 degree C; and a modification of the A-1 test requiring a 3-hr resuscitation of 35 degree C before incubation at 44.5 degree C for 21 hr. Fifteen State, Federal, and Provincial laboratories examined 10 routine shellfish-growing area samples per month in parallel by the 3 methods for 1 year. IMViC tests (indole, methyl red, Voges-Proskauer, and citrate) were conducted on all gas-positive tubes. The modified A-1 test recovered higher levels of fecal coliforms than the A-1 test. Although there were seasonal and geographic variations in recovery and enumeration by the modified A-1 test, overall there was good correlation of the modified A-1 test with the EC test. Both the A-1 and modified A-1 tests were more specific for Escherichia coli than the EC test. Results of the study indicate that the 24-hr modified A-1 test can be used as an alterantive test for the standard 72-hr EC test as an adjunct to the sanitary survey for the classification and control of shellfish-growing areas waters. PMID:365853

  16. Phase-field investigation on the non-equilibrium interface dynamics of rapid alloy solidification

    SciTech Connect

    Choi, Jeong

    2011-01-01

    The research program reported here is focused on critical issues that represent conspicuous gaps in current understanding of rapid solidification, limiting our ability to predict and control microstructural evolution (i.e. morphological dynamics and microsegregation) at high undercooling, where conditions depart significantly from local equilibrium. More specifically, through careful application of phase-field modeling, using appropriate thin-interface and anti-trapping corrections and addressing important details such as transient effects and a velocity-dependent (i.e. adaptive) numerics, the current analysis provides a reasonable simulation-based picture of non-equilibrium solute partitioning and the corresponding oscillatory dynamics associated with single-phase rapid solidification and show that this method is a suitable means for a self-consistent simulation of transient behavior and operating point selection under rapid growth conditions. Moving beyond the limitations of conventional theoretical/analytical treatments of non-equilibrium solute partitioning, these results serve to substantiate recent experimental findings and analytical treatments for single-phase rapid solidification. The departure from the equilibrium solid concentration at the solid-liquid interface was often observed during rapid solidification, and the energetic associated non-equilibrium solute partitioning has been treated in detail, providing possible ranges of interface concentrations for a given growth condition. Use of these treatments for analytical description of specific single-phase dendritic and cellular operating point selection, however, requires a model for solute partitioning under a given set of growth conditions. Therefore, analytical solute trapping models which describe the chemical partitioning as a function of steady state interface velocities have been developed and widely utilized in most of the theoretical investigations of rapid solidification. However, these

  17. Continuous Magnetic Field Monitoring Using Rapid Re-Excitation of NMR Probe Sets.

    PubMed

    Dietrich, Benjamin E; Brunner, David O; Wilm, Bertram J; Barmet, Christoph; Pruessmann, Klaas P

    2016-06-01

    MRI relies on static and spatially varying dynamic magnetic fields of high accuracy. NMR field probes permit the direct observation of spatiotemporal field dynamics for diverse purposes such as data correction, field control, sequence validation, and hardware characterization. However, due to probe signal decay and dephasing existing field cameras are limited in terms of readout duration and the extent of k -space that can be covered. The present work aims to overcome these limitations by the transition to short-lived NMR probes and rapid re-excitation. The proposed approach uses probes with T 2 so short that thermal relaxation dominates signal decay even in the presence of strongest gradients. They are integrated with transmit, receive and sequencing electronics that permit high-rate re-excitation with optional probe alternation as well as complementary RF pulse recording. The system is demonstrated by monitoring of sample MRI sequences with long readouts and large gradient moments. It is compared with the conventional long-lived probe concept and characterized in terms of net sensitivity and sources of systematic error. Continuous k -space trajectory mapping is demonstrated and validated by trajectory-based image reconstruction. PMID:26742126

  18. A Rapid, Fluorescence-Based Field Screening Technique for Organic Species in Soil and Water Matrices.

    PubMed

    Russell, Amber L; Martin, David P; Cuddy, Michael F; Bednar, Anthony J

    2016-06-01

    Real-time detection of hydrocarbon contaminants in the environment presents analytical challenges because traditional laboratory-based techniques are cumbersome and not readily field portable. In the current work, a method for rapid and semi-quantitative detection of organic contaminants, primarily crude oil, in natural water and soil matrices has been developed. Detection limits in the parts per million and parts per billion were accomplished when using visual and digital detection methods, respectively. The extraction technique was modified from standard methodologies used for hydrocarbon analysis and provides a straight-forward separation technique that can remove interference from complex natural constituents. For water samples this method is semi-quantitative, with recoveries ranging from 70 % to 130 %, while measurements of soil samples are more qualitative due to lower extraction efficiencies related to the limitations of field-deployable procedures. PMID:26988223

  19. Discovery of a strong magnetic field in the rapidly rotating B2Vn star HR 7355

    NASA Astrophysics Data System (ADS)

    Oksala, M. E.; Wade, G. A.; Marcolino, W. L. F.; Grunhut, J.; Bohlender, D.; Manset, N.; Townsend, R. H. D.; Mimes Collaboration

    2010-06-01

    We report the detection of a strong, organized magnetic field in the He-variable early B-type star HR 7355 using spectropolarimetric data obtained with ESPaDOnS on the 3.6-m Canada-France-Hawaii Telescope within the context of the Magnetism in Massive Stars (MiMeS) Large Program. HR 7355 is both the most rapidly rotating known main-sequence magnetic star and the most rapidly rotating He-strong star, with v sin i = 300 +/- 15 km s-1 and a rotational period of 0.5214404+/-0.0000006 d. We have modelled our eight longitudinal magnetic field measurements assuming an oblique dipole magnetic field. Constraining the inclination of the rotation axis to be between 38° and 86°, we find the magnetic obliquity angle to be between 30° and 85°, and the polar strength of the magnetic field at the stellar surface to be between 13-17 kG. The photometric light curve constructed from HIPPARCOS archival data and new CTIO measurements shows two minima separated by 0.5 in rotational phase and occurring 0.25 cycles before/after the magnetic extrema. This photometric behaviour, coupled with previously reported variable emission of the Hα line (which we confirm), strongly supports the proposal that HR 7355 harbours a structured magnetosphere similar to that in the prototypical He-strong star, σ Ori E. Based on observations obtained at the Canada-France-Hawaii Telescope (CFHT) which is operated by the National Research Council of Canada, the Institut National des Sciences de l'Univers of the Centre National de la Recherche Scientifique of France and the University of Hawaii.

  20. Rapid 3-D forward modeling of gravity and gravity gradient tensor fields

    NASA Astrophysics Data System (ADS)

    Longwei, C.; Dai, S.; Zhang, Q.

    2014-12-01

    Three-dimensional inversion are the key process in gravity exploration. In the commonly used scheme of inversion, the subsurface of the earth is usually divided into many small prism blocks (or grids) with variable density values. A key task in gravity inversion is to calculate the composite fields (gravity and gravity gradient tensor) generated by all these grids, this is known as forward modeling. In general forward modeling is memory-demanding and time-consuming. One scheme to rapidly calculate the fields is to implement it in Fourier domain and use fast Fourier transform algorithm. The advantage of the Fourier domain method is, obviously, much faster. However, the intrinsic edge effect of the Fourier domain method degrades the precision of the calculated fields. We have developed an innovative scheme to directly calculate the fields in spatial domain. There are two key points in this scheme. One key point is spatial discretization. Spatial convolution formula is discretized using an approach similar to normal difference method. A key idea during discretization is to use the analytical formula of a cubic prism, and this makes the resultant discrete formula have clear physical meaning: it embodies the superposition principle of the fields and is the exact formula to calculate the fields generated by all grids. The discretization only requires the grids have the same dimension in horizontal directions, and grids in different layers may have different dimension in vertical direction, and this offers more flexibility for inversion. Another key point is discrete convolution calculation. We invoke a high efficient two-dimensional discrete convolution algorithm, and it guarantees both time-saving and memory-saving. Its memory cost has the same order as the number of grids. Numerical test result shows that for a model with a dimension of 1000x1000x201 grids, it takes about 300s to calculate the fields on 1000x1000 field points in a personal computer with 3.4-GHz CPU

  1. Rapid Radiofrequency Field Mapping In Vivo Using Single-Shot STEAM MRI

    PubMed Central

    Helms, Gunther; Finsterbusch, Jürgen; Weiskopf, Nikolaus; Dechent, Peter

    2008-01-01

    Higher field strengths entail less homogeneous RF fields. This may influence quantitative MRI and MRS. A method for rapidly mapping the RF field in the human head with minimal distortion was developed on the basis of a single-shot stimulated echo acquisition mode (STEAM) sequence. The flip angle of the second RF pulse in the STEAM preparation was set to 60° and 100° instead of 90°, inducing a flip angle-dependent signal change. A quadratic approximation of this trigonometric signal dependence together with a calibration accounting for slice excitation-related bias allowed for directly determining the RF field from the two measurements only. RF maps down to the level of the medulla could be obtained in less than 1 min and registered to anatomical volumes by means of the T2-weighted STEAM images. Flip angles between 75% and 125% of the nominal value were measured in line with other methods. Magn Reson Med 60:739–743, 2008. © 2008 Wiley-Liss, Inc. PMID:18727090

  2. Rapid assessment: an international review of diffusion, practice and outcomes in the substance use field.

    PubMed

    Fitch, Chris; Stimson, Gerry V; Rhodes, Tim; Poznyak, Vladimir

    2004-11-01

    'Rapid assessment' (RA) methods have the potential to generate important public health information. This potential is now the subject of debate within the substance use field. Despite this, much remains unknown about the application and outcomes of RAs on substance use, a situation compounded by the absence of published studies. Consequently, we undertook a retrospective review of the use of RA in the substance use field drawing on three methods: literature review (n=300 published and unpublished documents); survey of RA practitioners/commissioners (n=1200 contacts); in-depth expert consultation (n=10 interviews). Study findings indicated: (i) earliest identified RAs were conducted in 1993, with 83 identified studies conducted by 2001; (ii) RAs have been conducted in 70 countries, with seven out of 10 assessments undertaken between 1998 and 2001; (iii) RAs were reported as taking 9-486 days (69 weeks) to complete; and (iv) important outcomes can follow RA on substance use--one in two studies were followed by medical or non-medical interventions, workshops, training, policy change, community participation, network building, or other outcomes (45/83; 54%), whilst more than one in four RAs were followed by medical and non-medical interventions, or policy impact and change (25/83; 30%). In conclusion, we argue that to fully realise the potential of RA in the substance use field, investment has to be made in RA's evidence and knowledge base: in short, a culture of learning, reflection and discussion has to be introduced into a methodology currently premised on rapidity and pragmatism. PMID:15312917

  3. Two-dimensional shear bands growing dynamically in plates: An investigation of transient deformation fields, temperature fields and shear band toughness

    SciTech Connect

    Rosakis, A.J.

    1995-12-31

    The phenomenon of dynamic initiation and propagation of two-dimensional adiabatic shear bands is experimentally and numerically investigated. Prenotched metal plates are subjected to asymmetric impact load histories (dynamic mode-II loading). Dynamic shear bands emanate from the notch-tip and propagate rapidly in a direction nearly parallel to the direction of impact. Real time temperature histories along a line intersecting and perpendicular to the shear band paths are recorded by means of a high speed infrared detector system. The materials studied are C-300 (a maraging steel), HY-100 steel and Ti-6Al-4V. Experiments show that the peak temperatures inside the propagating shear bands are approaching 90% of the melting point for C-300 and are significantly lower for the titanium alloy (up to 6000C). Additionally, measured distances of shear band propagation indicate stronger resistance to shear banding by HY-100 steel and Ti-6Al-4V. Deformation fields around the propagating shear band are recorded using high speed photography. Shear band speeds are found to strongly depend on impact velocity are as high as 1200 m/s for C-300 steel. Finite element simulations of the experiment are carried out under the context of plane strain, considering finite deformations, inertia, heat conduction, thermal softening, strain hardening and strain-rate hardening. In the simulations, the shear band propagation is assumed to be governed by a critical plastic strain criterion. The results are compared with experimental measurements obtained using the high speed infrared detectors and high speed photography. Finally, the numerical calculations are used to investigate motions of shear band toughness. The shear band driving force is calculated as a function of shear band velocity and compared to the crack driving force versus velocity relations for mode-I, opening cracks in the same material.

  4. Recommendations for Guidelines for Environment-Specific Magnetic-Field Measurements, Rapid Program Engineering Project #2

    SciTech Connect

    Electric Research and Management, Inc.; IIT Research Institute; Magnetic Measurements; Survey Research Center, University of California; T. Dan Bracken, Inc.

    1997-03-11

    The purpose of this project was to document widely applicable methods for characterizing the magnetic fields in a given environment, recognizing the many sources co-existing within that space. The guidelines are designed to allow the reader to follow an efficient process to (1) plan the goals and requirements of a magnetic-field study, (2) develop a study structure and protocol, and (3) document and carry out the plan. These guidelines take the reader first through the process of developing a basic study strategy, then through planning and performing the data collection. Last, the critical factors of data management, analysis reporting, and quality assurance are discussed. The guidelines are structured to allow the researcher to develop a protocol that responds to specific site and project needs. The Research and Public Information Dissemination Program (RAPID) is based on exposure to magnetic fields and the potential health effects. Therefore, the most important focus for these magnetic-field measurement guidelines is relevance to exposure. The assumed objective of an environment-specific measurement is to characterize the environment (given a set of occupants and magnetic-field sources) so that information about the exposure of the occupants may be inferred. Ideally, the researcher seeks to obtain complete or "perfect" information about these magnetic fields, so that personal exposure might also be modeled perfectly. However, complete data collection is not feasible. In fact, it has been made more difficult as the research field has moved to expand the list of field parameters measured, increasing the cost and complexity of performing a measurement and analyzing the data. The guidelines address this issue by guiding the user to design a measurement protocol that will gather the most exposure-relevant information based on the locations of people in relation to the sources. We suggest that the "microenvironment" become the base unit of area in a study, with

  5. Spatiotemporal variations in growing season exchanges of CO2, H2O,and sensible heat in agricultural fields of the Southern GreatPlains

    SciTech Connect

    Fischer, Marc L.; Billesbach, David P.; Berry, Joseph A.; Riley,William J.; Torn, Margaret S.

    2007-06-13

    Climate, vegetation cover, and management create fine-scaleheterogeneity in unirrigated agricultural regions, with important but notwell-quantified consequences for spatial and temporal variations insurface CO2, water, and heat fluxes. We measured eddy covariance fluxesin seven agricultural fields--comprising winter wheat, pasture, andsorghum--in the U.S. Southern Great Plains (SGP) during the 2001-2003growing seasons. Land-cover was the dominant source of variation insurface fluxes, with 50-100 percent differences between fields planted inwinter-spring versus fields planted in summer. Interannual variation wasdriven mainly by precipitation, which varied more than two-fold betweenyears. Peak aboveground biomass and growing-season net ecosystem exchange(NEE) of CO2 increased in rough proportion to precipitation. Based on apartitioning of gross fluxes with a regression model, ecosystemrespiration increased linearly with gross primary production, but with anoffset that increased near the time of seed production. Because theregression model was designed for well-watered periods, it successfullyretrieved NEE and ecosystem parameters during the peak growing season,and identified periods of moisture limitation during the summer. Insummary, the effects of crop type, land management, and water limitationon carbon, water, and energy fluxes were large. Capturing the controllingfactors in landscape scale models will be necessary to estimate theecological feedbacks to climate and other environmental impactsassociated with changing human needs for agricultural production of food,fiber, and energy.

  6. Rapid, high-temperature, field test method for evaluation of geothermal calcium carbonate scale inhibitors

    SciTech Connect

    Asperger, R.G.

    1986-09-01

    A new test method is described that allows the rapid field testing of calcium carbonate scale inhibitors at 500/sup 0/F (260/sup 0/C). The method evolved from use of a full-flow test loop on a well with a mass flow rate of about 1 x 10/sup 6/ lbm/hr (126 kg/s). It is a simple, effective way to evaluate the effectiveness of inhibitors under field conditions. Five commercial formulations were chosen for field evaluation on the basis of nonflowing, laboratory screening tests at 500/sup 0/F (260/sup 0/C). Four of these formulations from different suppliers controlled calcium carbonate scale deposition as measured by the test method. Two of these could dislodge recently deposited scale that had not age-hardened. Performance-profile diagrams, which were measured for these four effective inhibitors, show the concentration interrelationship between brine calcium and inhibitor concentrations at which the formulations will and will not stop scale formation in the test apparatus. With these diagrams, one formulation was chosen for testing on the full-flow brine line. The composition was tested for 6 weeks and showed a dramatic decrease in the scaling occurring at the flow-control valve. This scaling was about to force a shutdown of a major, long-term flow test being done for reservoir economic evaluations. The inhibitor stopped the scaling, and the test was performed without interruption.

  7. Strong-field dynamo action in rapidly rotating convection with no inertia

    NASA Astrophysics Data System (ADS)

    Hughes, David W.; Cattaneo, Fausto

    2016-06-01

    The earth's magnetic field is generated by dynamo action driven by convection in the outer core. For numerical reasons, inertial and viscous forces play an important role in geodynamo models; however, the primary dynamical balance in the earth's core is believed to be between buoyancy, Coriolis, and magnetic forces. The hope has been that by setting the Ekman number to be as small as computationally feasible, an asymptotic regime would be reached in which the correct force balance is achieved. However, recent analyses of geodynamo models suggest that the desired balance has still not yet been attained. Here we adopt a complementary approach consisting of a model of rapidly rotating convection in which inertial forces are neglected from the outset. Within this framework we are able to construct a branch of solutions in which the dynamo generates a strong magnetic field that satisfies the expected force balance. The resulting strongly magnetized convection is dramatically different from the corresponding solutions in which the field is weak.

  8. Strong-field dynamo action in rapidly rotating convection with no inertia.

    PubMed

    Hughes, David W; Cattaneo, Fausto

    2016-06-01

    The earth's magnetic field is generated by dynamo action driven by convection in the outer core. For numerical reasons, inertial and viscous forces play an important role in geodynamo models; however, the primary dynamical balance in the earth's core is believed to be between buoyancy, Coriolis, and magnetic forces. The hope has been that by setting the Ekman number to be as small as computationally feasible, an asymptotic regime would be reached in which the correct force balance is achieved. However, recent analyses of geodynamo models suggest that the desired balance has still not yet been attained. Here we adopt a complementary approach consisting of a model of rapidly rotating convection in which inertial forces are neglected from the outset. Within this framework we are able to construct a branch of solutions in which the dynamo generates a strong magnetic field that satisfies the expected force balance. The resulting strongly magnetized convection is dramatically different from the corresponding solutions in which the field is weak. PMID:27415196

  9. Growing inhomogeneities in cosmological Goldstone modes

    NASA Astrophysics Data System (ADS)

    Benson, Katherine M.

    1992-08-01

    We examine the evolution of initial inhomogeneities in a Goldstone field in an expanding Friedmann-Robertson-Walker universe. We find subhorizon inhomogeneities grow, relative to the homogeneous state. This stems not from growing fluctuations - which simply redshift - but from rapid (ϱ ~ a-6) decay of the homogeneous state. We show how Goldstone modes escape assumptions - some inapplicable, some ill-founded - underpinning conventional analyses of cosmological fluctuations. Finally, we reconcile our analysis to standard cosmology, noting that the Goldstone evolution is essentially decoupled and dynamical. This material is based upon work supported by NSF grants PHY-87-14654 (while the author was at Harvard University) and PHY91-06210.

  10. Directly heated high surface area solid phase microextraction sampler for rapid field forensic analyses.

    PubMed

    Ramsey, Scott A; Mustacich, Robert V; Smith, Philip A; Hook, Gary L; Eckenrode, Brian A

    2009-11-01

    A high-surface area solid phase microextraction (HSA-SPME) sampler is described for dynamic sampling at high air velocities (up to several hundred centimeters per second). The sampling device consists of a thin wire coated with carboxen/polydimethylsiloxane (carboxen/PDMS) material, wound in the annular space between two concentric glass tubes, providing a large trapping surface from which analytes may then be thermally desorbed with little power consumption upon resistive heating of the wire. Desorbed analytes are focused and reconcentrated on a microtrap that is subsequently resistively heated to introduce analytes for GC or GC/MS analysis. Benzene, toluene, ethylbenzene, and xylenes (BTEX) included in a 39-component toxic organics (TO-14) gas mixture were used to evaluate the efficiency of the HSA-SPME sampler. Quantitation of trace-level BTEX compounds present during weapons cleaning was completed using stepwise calibration. Detection limits of 0.2-6.9 pptr(v) were observed for these analytes using single ion monitoring GC/MS analysis, and an improvement in sensitivity of several orders of magnitude was achieved when compared to standard dynamic flow SPME with a commercially available 10 mm carboxen/PDMS fiber. The potential for rapid analyte uptake and improved sensitivity using the HSA-SPME design will make it possible to rapidly collect and analyze VOC samples in field settings using a portable hand-held pump and a small, low power GC/MS instrument. This system will be especially useful for situations involving forensics, public safety, and military defensive or intelligence needs where rapid, sensitive detection of airborne analytes is required. PMID:19795869

  11. Rapid and field-deployable biological and chemical Raman-based identification

    NASA Astrophysics Data System (ADS)

    Botonjic-Sehic, Edita; Paxon, Tracy L.; Boudries, Hacene

    2011-06-01

    Pathogen detection using Raman spectroscopy is achieved through the use of a sandwich immunoassay. Antibody-modified magnetic beads are used to capture and concentrate target analytes in solution and surface-enhanced Raman spectroscopy (SERS) tags are conjugated with antibodies and act as labels to enable specific detection of biological pathogens. The rapid detection of biological pathogens is critical to first responders, thus assays to detect E.Coli and Anthrax have been developed and will be reported. The problems associated with pathogen detection resulting from the spectral complexity and variability of microorganisms are overcome through the use of SERS tags, which provide an intense, easily recognizable, and spectrally consistent Raman signal. The developed E. coli assay has been tested with 5 strains of E. coli and shows a low limit of detection, on the order of 10 and 100 c.f.u. per assay. Additionally, the SERS assay utilizes magnetic beads to collect the labeled pathogens into the focal point of the detection laser beam, making the assay robust to commonly encountered white powder interferants such as flour, baking powder, and corn starch. The reagents were also found to be stable at room temperature over extended periods of time with testing conducted over a one year period. Finally, through a specialized software algorithm, the assays are interfaced to the Raman instrument, StreetLab Mobile, for rapid-field-deployable biological identification.

  12. Exterior field of slowly and rapidly rotating neutron stars: Rehabilitating spacetime metrics involving hyperextreme objects

    NASA Astrophysics Data System (ADS)

    Manko, V. S.; Ruiz, E.

    2016-05-01

    The 4-parameter exact solution presumably describing the exterior gravitational field of a generic neutron star is presented in a concise explicit form defined by only three potentials. In the equatorial plane, the metric functions of the solution are found to be given by particularly simple expressions that make them very suitable for the use in concrete applications. Following Pappas and Apostolatos, we perform a comparison of the multipole structure of the solution with the multipole moments of the known physically realistic Berti-Stergioulas numerical models of neutron stars to argue that the hyperextreme sectors of the solution are not less (but are possibly even more) important for the correct description of rapidly rotating neutron stars than the subextreme sector involving exclusively the black-hole constituents. We have also worked out in explicit form an exact analog of the well-known Hartle-Thorne approximate metric.

  13. Rapid evolution of analog circuits configured on a field programmable transistor array

    NASA Technical Reports Server (NTRS)

    Stoica, A.; Ferguson, M. I.; Zebulum, R. S.; Keymeulen, D.; Duong, V.; Daud, T.

    2002-01-01

    The purpose of this paper is to illustrate evolution of analog circuits on a stand-alone board-level evolvable system (SABLES). SABLES is part of an effort to achieve integrated evolvable systems. SABLES provides autonomous, fast (tens to hundreds of seconds), on-chip circuit evolution involving about 100,000 circuit evaluations. Its main components are a JPL Field Programmable Transistor Array (FPTA) chip used as transistor-level reconfigurable hardware, and a TI DSP that implements the evolutionary algorithm controlling the FPTA reconfiguration. The paper details an example of evolution on SABLES and points out to certain transient and memory effects that affect the stability of solutions obtained reusing the same piece of hardware for rapid testing of individuals during evolution.

  14. Field Testing of Rapid Electrokinetic Nanoparticle Treatment for Corrosion Control of Steel in Concrete

    NASA Technical Reports Server (NTRS)

    Cardenas, Henry E.; Alexander, Joshua B.; Kupwade-Patil,Kunal; Calle, Luz Marina

    2009-01-01

    This work field tested the use of electrokinetics for delivery of concrete sealing nanoparticles concurrent with the extraction of chlorides. Several cylinders of concrete were batched and placed in immersion at the Kennedy Space Center Beach Corrosion Test Site. The specimens were batched with steel reinforcement and a 4.5 wt.% (weight percent) content of sodium chloride. Upon arrival at Kennedy Space Center, the specimens were placed in the saltwater immersion pool at the Beach Corrosion Test Site. Following 30 days of saltwater exposure, the specimens were subjected to rapid chloride extraction concurrent with electrokinetic nanoparticle treatment. The treatments were operated at up to eight times the typical current density in order to complete the treatment in 7 days. The findings indicated that the short-term corrosion resistance of the concrete specimens was significantly enhanced as was the strength of the concrete.

  15. Comparative evaluation of two rapid field tests for malaria diagnosis: Partec Rapid Malaria Test® and Binax Now® Malaria Rapid Diagnostic Test

    PubMed Central

    2011-01-01

    Background About 90% of all malaria deaths in sub-Saharan Africa occur in children under five years. Fast and reliable diagnosis of malaria requires confirmation of the presence of malaria parasites in the blood of patients with fever or history suggestive of malaria; hence a prompt and accurate diagnosis of malaria is the key to effective disease management. Confirmation of malaria infection requires the availability of a rapid, sensitive, and specific testing at an affordable cost. We compared two recent methods (the novel Partec Rapid Malaria Test® (PT) and the Binax Now® Malaria Rapid Diagnostic Test (BN RDT) with the conventional Giemsa stain microscopy (GM) for the diagnosis of malaria among children in a clinical laboratory of a hospital in a rural endemic area of Ghana. Methods Blood samples were collected from 263 children admitted with fever or a history of fever to the pediatric clinic of the Agogo Presbyterian Hospital. The three different test methods PT, BN RDT and GM were performed independently by well trained and competent laboratory staff to assess the presence of malaria parasites. Results were analyzed and compared using GM as the reference standard. Results In 107 (40.7%) of 263 study participants, Plasmodium sp. was detected by GM. PT and BN RDT showed positive results in 111 (42.2%) and 114 (43.4%), respectively. Compared to GM reference standard, the sensitivities of the PT and BN RDT were 100% (95% CI: 96.6-100) and 97.2% (95% CI: 92.0-99.4), respectively, specificities were 97.4% (95% CI: 93.6-99.3) and 93.6% (95% CI: 88.5-96.9), respectively. There was a strong agreement (kappa) between the applied test methods (GM vs PT: 0.97; p < 0.001 and GM vs BN RDT: 0.90; p < 0.001). The average turnaround time per tests was 17 minutes. Conclusion In this study two rapid malaria tests, PT and BN RDT, demonstrated a good quality of their performance compared to conventional GM. Both methods require little training, have short turnaround times, are

  16. Rapid tsunami models and earthquake source parameters: Far-field and local applications

    USGS Publications Warehouse

    Geist, E.L.

    2005-01-01

    Rapid tsunami models have recently been developed to forecast far-field tsunami amplitudes from initial earthquake information (magnitude and hypocenter). Earthquake source parameters that directly affect tsunami generation as used in rapid tsunami models are examined, with particular attention to local versus far-field application of those models. First, validity of the assumption that the focal mechanism and type of faulting for tsunamigenic earthquakes is similar in a given region can be evaluated by measuring the seismic consistency of past events. Second, the assumption that slip occurs uniformly over an area of rupture will most often underestimate the amplitude and leading-wave steepness of the local tsunami. Third, sometimes large magnitude earthquakes will exhibit a high degree of spatial heterogeneity such that tsunami sources will be composed of distinct sub-events that can cause constructive and destructive interference in the wavefield away from the source. Using a stochastic source model, it is demonstrated that local tsunami amplitudes vary by as much as a factor of two or more, depending on the local bathymetry. If other earthquake source parameters such as focal depth or shear modulus are varied in addition to the slip distribution patterns, even greater uncertainty in local tsunami amplitude is expected for earthquakes of similar magnitude. Because of the short amount of time available to issue local warnings and because of the high degree of uncertainty associated with local, model-based forecasts as suggested by this study, direct wave height observations and a strong public education and preparedness program are critical for those regions near suspected tsunami sources.

  17. Nuclear DNA Methylation and Chromatin Condensation Phenotypes Are Distinct Between Normally Proliferating/Aging, Rapidly Growing/Immortal, and Senescent Cells

    PubMed Central

    Gertych, Arkadiusz; Tajbakhsh, Jian

    2013-01-01

    This study reports on probing the utility of in situ chromatin texture features such as nuclear DNA methylation and chromatin condensation patterns — visualized by fluorescent staining and evaluated by dedicated three-dimensional (3D) quantitative and high-throughput cell-by-cell image analysis — in assessing the proliferative capacity, i.e. growth behavior of cells: to provide a more dynamic picture of a cell population with potential implications in basic science, cancer diagnostics/prognostics and therapeutic drug development. Two types of primary cells and four different cancer cell lines were propagated and subjected to cell-counting, flow cytometry, confocal imaging, and 3D image analysis at various points in culture. Additionally a subset of primary and cancer cells was accelerated into senescence by oxidative stress. DNA methylation and chromatin condensation levels decreased with declining doubling times when primary cells aged in culture with the lowest levels reached at the stage of proliferative senescence. In comparison, immortal cancer cells with constant but higher doubling times mostly displayed lower and constant levels of the two in situ-derived features. However, stress-induced senescent primary and cancer cells showed similar levels of these features compared with primary cells that had reached natural growth arrest. With regards to global DNA methylation and chromatin condensation levels, aggressively growing cancer cells seem to take an intermediate level between normally proliferating and senescent cells. Thus, normal cells apparently reach cancer-cell equivalent stages of the two parameters at some point in aging, which might challenge phenotypic distinction between these two types of cells. Companion high-resolution molecular profiling could provide information on possible underlying differences that would explain benign versus malign cell growth behaviors. PMID:23562889

  18. From the laboratory to the field: assaying histone methylation at FLOWERING LOCUS C in naturally growing Arabidopsis halleri.

    PubMed

    Nishio, Haruki; Buzas, Diana Mihaela; Nagano, Atsushi J; Suzuki, Yutaka; Sugano, Sumio; Ito, Motomi; Morinaga, Shin-Ichi; Kudoh, Hiroshi

    2016-07-20

    Gene regulatory mechanisms are often defined in studies performed in the laboratory but are seldom validated for natural habitat conditions, i.e., in natura. Vernalization, the promotion of flowering by winter cold, is a prominent naturally occurring phenomenon, so far best characterized using artificial warm and cold treatments. The floral inhibitor FLOWERING LOCUS C (FLC) gene of Arabidopsis thaliana has been identified as the central regulator of vernalization. FLC shows an idiosyncratic pattern of histone modification at different stages of cold exposure, believed to regulate transcriptional responses of FLC. Chromatin modifications, including H3K4me3 and H3K27me3, are routinely quantified using chromatin immunoprecipitation (ChIP), standardized for laboratory samples. In this report, we modified a ChIP protocol to make it suitable for analysis of field samples. We first validated candidate normalization control genes at two stages of cold exposure in the laboratory and two seasons in the field, also taking into account nucleosome density. We further describe experimental conditions for performing sampling and sample preservation in the field and demonstrate that these conditions give robust results, comparable with those from laboratory samples. The ChIP protocol incorporating these modifications, "Field ChIP", was used to initiate in natura chromatin analysis of AhgFLC, an FLC orthologue in A. halleri, of which a natural population is already under investigation. Here, we report results on levels of H3K4me3 and H3K27me3 at three representative regions of AhgFLC in controlled cold and field samples, before and during cold exposure. We directly compared the results in the field with those from laboratory samples. These data revealed largely similar trends in histone modification dynamics between laboratory and field samples at AhgFLC, but also identified some possible differences. The Field ChIP method described here will facilitate comprehensive chromatin

  19. A quantitative health assessment index for rapid evaluation of fish condition in the field

    SciTech Connect

    Adams, S.M. ); Brown, A.M. ); Goede, R.W. )

    1993-01-01

    The health assessment index (HAI) is an extension and refinement of a previously published field necropsy system. The HAI is a quantitative index that allows statistical comparisons of fish health among data sets. Index variables are assigned numerical values based on the degree of severity or damage incurred by an organ or tissue from environmental stressors. This approach has been used to evaluate the general health status of fish populations in a wide range of reservoir types in the Tennessee River basin (North Carolina, Tennessee, Alabama, Kentucky), in Hartwell Reservoir (Georgia, South Carolina) that is contaminated by polychlorinated biphenyls, and in the Pigeon River (Tennessee, North Carolina) that receives effluents from a bleaches kraft mill. The ability of the HAI to accurately characterize the health of fish in these systems was evaluated by comparing this index to other types of fish health measures (contaminant, bioindicator, and reproductive analysis) made at the same time as the HAI. In all cases, the HAI demonstrated the same pattern of fish health status between sites as did each of the other more sophisticated health assessment methods. The HAI has proven to be a simple and inexpensive means of rapidly assessing general fish health in field situations. 29 refs., 5 tabs.

  20. Rapid Measurements of Snow Stratigraphy Using A Portable Penetration Field Instrument

    NASA Astrophysics Data System (ADS)

    Foster, Robert; Louge, Michel; Clifford, Kelly; Decker, Rand

    We describe a new field-portable tool for avalanche forecasting and hydrology that can rapidly generate stratigraphic profiles of density, permittivity and temperature through the snow pack. This penetration instrument consists of a wedged capacitance tip mounted at the end of a pole and a mechanical depth gauge. By appropriate place- ment of its reference, guard and sensor conductive surfaces, the instrument sheds hor- izontal electric field lines resolving horizontal snow layers of 2.5mm thickness. The probe was tested under realistically cold conditions at the mountain resort of Alta near Salt Lake City, Utah. There, it recorded the stratigraphy of the real and imaginary parts of the dielectric constant at 3.9kHz and the temperature through a typical winter snow pack. The portable electronics was carried in a small backpack and the depth was recorded using a rotary digital encoder in frictional contact with the pole. The profiles were automatically acquired on a hand-held Personal Digital Assistant. Using independent calibrations, measurements of the real part provided an accurate profile of density later confirmed by the conventional excavation of a detailed snow cover profile. The ratio of the imaginary and real permittivities also revealed the signature of individual snow layers that could be identified in the excavation.

  1. Compartmental analysis of roots in intact rapidly-growing Spergularia marina and Lactuca sativa: partial characterization of the symplasms functional in the radial transport of Na/sup +/ and K/sup +/

    SciTech Connect

    Lazof, D.B.

    1987-01-01

    Techniques of compartmental analysis were adapted to the study of intact roots of rapidly-growing Spergularia marine and Lactuca sativa. Using large numbers of plants short time-courses of uptake and chase, /sup 42/K/sup +/ and /sup 22/Na/sup +/ transport could be resolved, even during a chase following a brief 10 minute labeling period. The use of intact plant systems allowed distinction of that portion of the isotope flux into the root, associated with the ion-conducting symplasms. A small compartment, which rapidly (t/sub .5/ < 1 min) exchanges with the external medium was implicated in the radial transport of N/sup +/, accounting for the observed obtention of linear translocation rates within minutes of transferring to labeled solution. The ion contents of this compartment varied in proportion to the external ion concentration. When K/sup +/ was at a high external concentration, labeled K/sup +/ exchanged into this same symplasm, but chasing a short pulse indicated that K/sup +/ transport to the xylem was not through a rapidly-exchanging compartment. At physiological concentrations of K/sup +/ the evidence indicated that transport of K/sup +/ across the root proceeded through a compartment which was not exchanging rapidly with the external medium. The rise to a linear rate of isotope translocation was gradual and translocation during a chase, following a brief pulse,was prolonged, indicating that this compartment retained its specific activity for a considerable period.

  2. Growing Opuntia (cactus) and Brassica species for the long-term remediation of selenium-contaminated soil under field conditions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Identifying alternative crops for planting in Se-containing agricultural soils of western central California will depend upon the plants’ ability to tolerate high salt and boron (B) conditions. Multi-year field studies were conducted on Se-laden soils with different cactus clones (Opuntia-ficus indi...

  3. Field-Applicable Recombinase Polymerase Amplification Assay for Rapid Detection of Mycoplasma capricolum subsp. capripneumoniae

    PubMed Central

    Yu, Mingyan; O'Brien, Elizabeth; Heller, Martin; Nepper, Julia F.; Weibel, Douglas B.; Gluecks, Ilona; Younan, Mario; Frey, Joachim; Falquet, Laurent; Jores, Joerg

    2015-01-01

    Contagious caprine pleuropneumonia (CCPP) is a highly contagious disease caused by Mycoplasma capricolum subsp. capripneumoniae that affects goats in Africa and Asia. Current available methods for the diagnosis of Mycoplasma infection, including cultivation, serological assays, and PCR, are time-consuming and require fully equipped stationary laboratories, which make them incompatible with testing in the resource-poor settings that are most relevant to this disease. We report a rapid, specific, and sensitive assay employing isothermal DNA amplification using recombinase polymerase amplification (RPA) for the detection of M. capricolum subsp. capripneumoniae. We developed the assay using a specific target sequence in M. capricolum subsp. capripneumoniae, as found in the genome sequence of the field strain ILRI181 and the type strain F38 and that was further evidenced in 10 field strains from different geographical regions. Detection limits corresponding to 5 × 103 and 5 × 104 cells/ml were obtained using genomic DNA and bacterial culture from M. capricolum subsp. capripneumoniae strain ILRI181, while no amplification was obtained from 71 related Mycoplasma isolates or from the Acholeplasma or the Pasteurella isolates, demonstrating a high degree of specificity. The assay produces a fluorescent signal within 15 to 20 min and worked well using pleural fluid obtained directly from CCPP-positive animals without prior DNA extraction. We demonstrate that the diagnosis of CCPP can be achieved, with a short sample preparation time and a simple read-out device that can be powered by a car battery, in <45 min in a simulated field setting. PMID:26085615

  4. Field-Applicable Recombinase Polymerase Amplification Assay for Rapid Detection of Mycoplasma capricolum subsp. capripneumoniae.

    PubMed

    Liljander, Anne; Yu, Mingyan; O'Brien, Elizabeth; Heller, Martin; Nepper, Julia F; Weibel, Douglas B; Gluecks, Ilona; Younan, Mario; Frey, Joachim; Falquet, Laurent; Jores, Joerg

    2015-09-01

    Contagious caprine pleuropneumonia (CCPP) is a highly contagious disease caused by Mycoplasma capricolum subsp. capripneumoniae that affects goats in Africa and Asia. Current available methods for the diagnosis of Mycoplasma infection, including cultivation, serological assays, and PCR, are time-consuming and require fully equipped stationary laboratories, which make them incompatible with testing in the resource-poor settings that are most relevant to this disease. We report a rapid, specific, and sensitive assay employing isothermal DNA amplification using recombinase polymerase amplification (RPA) for the detection of M. capricolum subsp. capripneumoniae. We developed the assay using a specific target sequence in M. capricolum subsp. capripneumoniae, as found in the genome sequence of the field strain ILRI181 and the type strain F38 and that was further evidenced in 10 field strains from different geographical regions. Detection limits corresponding to 5 × 10(3) and 5 × 10(4) cells/ml were obtained using genomic DNA and bacterial culture from M. capricolum subsp. capripneumoniae strain ILRI181, while no amplification was obtained from 71 related Mycoplasma isolates or from the Acholeplasma or the Pasteurella isolates, demonstrating a high degree of specificity. The assay produces a fluorescent signal within 15 to 20 min and worked well using pleural fluid obtained directly from CCPP-positive animals without prior DNA extraction. We demonstrate that the diagnosis of CCPP can be achieved, with a short sample preparation time and a simple read-out device that can be powered by a car battery, in <45 min in a simulated field setting. PMID:26085615

  5. Too Fast to Measure: Network Adjustment of Rapidly Changing Gravity Fields

    NASA Astrophysics Data System (ADS)

    Kennedy, J.; Ferre, T. P. A.

    2014-12-01

    Measurements of spatially-variable gravity at the field scale are difficult; measurements of the time-varying field even more so. Every previous gravity survey using relative gravimeters—still the workhorse of gravity studies, despite their nearly 80 year history—has assumed a static gravity field during the course of a survey, which may last days to weeks. With recently-improved instrumentation, however, measurements of fields changing on the order of tens of nm/sec2 per day are now possible. In particular, the A-10 portable absolute gravimeter provides not only absolute control, but also the change in that control during the course of a survey. Using digitally-recording spring-based relative gravimeters (namely, the ZLS Burris meter and the Scintrex CG-5), with their more efficient data collection and lower drift than previous generations, many more data are collected in a day. We demonstrate a method for incorporating in the least-squares network adjustment of relative gravity data a relation between the rate of change of gravity, dg, and distance from an infiltration source, x. This relation accounts for the fact that gravity at stations adjacent to the infiltration source changes more rapidly than stations further away; if all measurements collected over several days are to be included in a single network-adjustment, consideration of this change is required. Two methods are used to simulate the dg(x) relation: a simple model where dg is a linear function of x, and a coupled-hydrogeophysical method where a groundwater flow model predicts the nonlinear spatial variation of dg. Then, the change in gravity between different, independently adjusted surveys is used to parameterize the groundwater model. Data from two recent field examples, an artificial recharge facility near Tucson, Arizona, USA, and from the 2014 Lower Colorado River pulse flow experiment, clearly show the need to account for gravity change during a survey; maximum rates of change for the two

  6. Rapid evaluation of fresh ex vivo kidney tissue with full-field optical coherence tomography

    PubMed Central

    Jain, Manu; Robinson, Brian D.; Salamoon, Bekheit; Thouvenin, Olivier; Boccara, Claude; Mukherjee, Sushmita

    2015-01-01

    Background: Full-field optical coherence tomography (FFOCT) is a real-time imaging technique that rapidly generates images reminiscent of histology without any tissue processing, warranting its exploration for evaluation of ex vivo kidney tissue. Methods: Fresh tissue sections from tumor and adjacent nonneoplastic kidney (n = 25 nephrectomy specimens; clear cell renal cell carcinoma (CCRCC) = 12, papillary RCC (PRCC) = 4, chromophobe RCC (ChRCC) = 4, papillary urothelial carcinoma (PUC) = 1, angiomyolipoma (AML) = 2 and cystic nephroma = 2) were imaged with a commercial FFOCT device. Sections were submitted for routine histopathological diagnosis. Results: Glomeruli, tubules, interstitium, and blood vessels were identified in nonneoplastic tissue. In tumor sections, the normal architecture was completely replaced by either sheets of cells/trabeculae or papillary structures. The former pattern was seen predominantly in CCRCC/ChRCC and the latter in PRCC/PUC (as confirmed on H&E). Although the cellular details were not very prominent at this resolution, we could identify unique cytoplasmic signatures in some kidney tumors. For example, the hyper-intense punctate signal in the cytoplasm of CRCC represents glycogen/lipid, large cells with abundant hyper-intense cytoplasm representing histiocytes in PRCC, and signal-void large polygonal cell representing adipocytes in AML. According to a blinded analysis was performed by an uropathologist, all nonneoplastic tissues were differentiated from neoplastic tissues. Further, all benign tumors were called benign and malignant were called malignant. A diagnostic accuracy of 80% was obtained in subtyping the tumors. Conclusion: The ability of FFOCT to reliably differentiate nonneoplastic from neoplastic tissue and identify some tumor types makes it a valuable tool for rapid evaluation of ex vivo kidney tissue e.g. for intraoperative margin assessment and kidney biopsy adequacy. Recently, higher resolution images were achieved

  7. Rapid Water Uptake and Limited Storage Capacity at Height of Growing Season in Four Temperate Tree Species in a Central Pennsylvania Catchment

    NASA Astrophysics Data System (ADS)

    Gaines, K.; Meinzer, F. C.; Duffy, C.; Thomas, E.; Eissenstat, D. M.

    2014-12-01

    rapid water uptake and tree water storage limited to about a month in duration. These findings are necessary for modeling of hydrologic parameters that are influenced by tree water age. They also indicate that trees on shallow soil in this catchment may be at risk if droughts lasting over a month occur more frequently in future years.

  8. Improving our knowledge of the rapid geomagnetic field intensity variation observed in Europe around 800 AD

    NASA Astrophysics Data System (ADS)

    Gómez-Paccard, M.; Chauvin, A.; Lanos, P.; Dufresne, P.; Kovacheva, M.; Hill, M. J.; Beamud, E.; Gutiérrez-Lloret, S.; Cañavate, V.; Blain, S.; Bouvier, A.; Oberlin, C.; Guibert, P.; Sapin, C.; Pringent, D.

    2011-12-01

    Available European data indicate that during the past 2500 years there have been periods of rapid intensity geomagnetic fluctuations interspersed with periods of little change. The challenge now is to precisely describe these rapid changes. The aim of this study is to obtain an improved description of the sharp geomagnetic intensity change that took place in Western Europe around 800 yrs AD as well as to investigate if this peak is observed at a continental scale. For this purpose 13 precisely dated early medieval Spanish pottery fragments, 4 archeological French kilns and a 3 collections of bricks used for the construction of different historical buildings from France and with ages ranging between 330 to 1290 AD have been studied. The material collected has been dated by archeological/historical constraints together with radiocarbon,thermoluminiscence (TL) and archeomagentic analysis. From classical Thellier experiments including TRM anisotropy and cooling rate corrections upon archeointensity estimates and conducted on 164 specimens (119 of them giving reliable results) ten new high-quality mean intensities have been obtained. The new intensity data together with a selection of the most reliable data from Western Europe have been relocated to the latitude of Paris and confirm the existence of an intensity maxima of ~85 μT centred at ~850 AD and related to intensity changes up to 20 μT per century. The results also indicate that a previous abrupt intensity change (reaching a maximum value of ~ 90 μT) took place in Western Europe around 650 AD. A selection of high-quality intensity data from Bulgaria, Italy and Greece indicate a very similar intensity trend for Eastern Europe. Although available data indicate that the duration of such periods of high intensities may be of less than one century more data are needed to infer the exact duration of these maximums. A comparison between the selected data and regional and global geomagnetic field models indicates that

  9. Field-deployable colorimetric biosensor system for the rapid detection of pathogenic organisms

    NASA Astrophysics Data System (ADS)

    Duy, Janice

    The rapid identification of pathogenic organisms is necessary for recognizing and managing human and environmental health risks. Numerous detection schemes are available, but most are difficult to employ in non-laboratory settings due to their need for bulky, specialized equipment, multiple reagents, or highly trained personnel. To address this problem, a rapid, field-compatible biosensor system based on the colorimetric detection of nucleic acid hybrids was developed. Peptide nucleic acid (PNA) probes were used to capture ribosomal RNA sequences from environmental samples. Non-target nucleic acids, including single-base mismatches flanked by adenines and uracils, were removed with a micrococcal nuclease digestion step. Matched PNA-RNA hybrids remained intact and were indicated by the cyanine dye DiSC2(5). PNA-containing duplexes function as templates for the aggregation of DiSC2(5), visualized as a change in solution color from blue to purple. This transition can be measured as an increase in the solution absorbance at 540 nm (dye aggregate) at the expense of the dye monomer peak at 650 nm. These concomitant spectral changes were used to calculate a "hybridization signal" using the ratio A aggregate/Amonomer ≈ A540/A650. Testing with pathogenic environmental samples was accomplished using two model organisms: the harmful algal bloom-causing dinoflagellate Alexandrium species, and the potato wart disease-causing fungus Synchytrium endobioticum. In both cases, the colorimetric approach was able to distinguish the targets with sensitivities rivaling those of established techniques, but with the advantages of decreased hands-on time and cost. Assay fieldability was tested with a portable colorimeter designed to quantify the dye-indicated hybridization signal and assembled from commercially available components. Side-by-side testing revealed no difference in the sensing performance of the colorimeter compared to a laboratory spectrophotometer (Pearson's r=0

  10. Carbonaceous Matter in Growing Nanoparticles

    NASA Astrophysics Data System (ADS)

    Johnston, M. V.; Stangl, C. M.; Horan, A. J.

    2015-12-01

    Atmospheric nanoparticles constitute the greatest portion of ambient aerosol loading by number. A major source of atmospheric nanoparticles is new particle formation (NPF), a gas to particle conversion process whereby clusters nucleate from gas phase precursors to form clusters on the order of one or a few nanometers and then grow rapidly to climatically relevant sizes. A substantial fraction of cloud condensation nuclei (CCN) are thought to arise from NPF. In order to better predict the frequency, growth rates, and climatic impacts of NPF, knowledge of the chemical mechanisms by which nucleated nanoparticles grow is needed. The two main contributors to particle growth are (neutralized) sulfate and carbonaceous matter. Particle growth by sulfuric acid condensation is generally well understood, though uncertainty remains about the extent of base neutralization and the relative roles of ammonia and amines. Much less is known about carbonaceous matter, and field measurements suggest that nitrogen-containing species are important. In this presentation, recent work by our group will be described that uses a combination of ambient measurements, laboratory experiments and computational work to study carbonaceous matter in growing nanoparticles. These studies span a range of particle sizes from the initial adsorption of molecules onto a nanometer-size ammonium bisulfate seed cluster to reactions in particles that are large enough to support condensed-phase chemistry.

  11. CHROMOSPHERIC RAPID BLUESHIFTED EXCURSIONS OBSERVED WITH IBIS AND THEIR ASSOCIATION WITH PHOTOSPHERIC MAGNETIC FIELD EVOLUTION

    SciTech Connect

    Deng, Na; Chen, Xin; Liu, Chang; Jing, Ju; Wang, Shuo; Wang, Haimin; Tritschler, Alexandra; Reardon, Kevin P.; Lamb, Derek A.; Deforest, Craig E.; Denker, Carsten; Liu, Rui

    2015-02-01

    Chromospheric rapid blueshifted excursions (RBEs) are suggested to be the disk counterparts of type II spicules at the limb and believed to contribute to the coronal heating process. Previous identification of RBEs was mainly based on feature detection using Dopplergrams. In this paper, we study RBEs on 2011 October 21 in a very quiet region at the disk center, which were observed with the high-cadence imaging spectroscopy of the Ca II 8542 Å line from the Interferometric Bidimensional Spectrometer (IBIS). By using an automatic spectral analysis algorithm, a total of 98 RBEs are identified during an 11 minute period. Most of these RBEs have either a round or elongated shape, with an average area of 1.2 arcsec{sup 2}. The detailed temporal evolution of spectra from IBIS makes possible a quantitative determination of the velocity (∼16 km s{sup –1}) and acceleration (∼400 m s{sup –2}) of Ca II 8542 RBEs, and reveals an additional deceleration (∼–160 m s{sup –2}) phase that usually follows the initial acceleration. In addition, we also investigate the association of RBEs with the concomitant photospheric magnetic field evolution, using coordinated high-resolution and high-sensitivity magnetograms made by Hinode. Clear examples are found where RBEs appear to be associated with the preceding magnetic flux emergence and/or the subsequent flux cancellation. However, further analysis with the aid of the Southwest Automatic Magnetic Identification Suite does not yield a significant statistical association between these RBEs and magnetic field evolution. We discuss the implications of our results in the context of understanding the driving mechanism of RBEs.

  12. Rapid acquisition of high resolution full wave-field borehole seismic data

    SciTech Connect

    Sleefe, G.E.; Harding, R.S. Jr.; Fairborn, J.W.; Paulsson, B.N.P.

    1993-04-01

    An essential requirement for both Vertical Seismic Profiling (VSP) and Cross-Hole Seismic Profiling (CHSP) is the rapid acquisition of high resolution borehole seismic data. Additionally, full wave-field recording using three-component receivers enables the use of both transmitted and reflected elastic wave events in the resulting seismic images of the subsurface. To this end, an advanced three- component multi-station borehole seismic receiver system has been designed and developed by Sandia National Laboratory (SNL) and OYO Geospace. The system requires data from multiple three-component wall-locking accelerometer packages and telemeters digital data to the surface in real-time. Due to the multiplicity of measurement stations and the real-time data link, acquisition time for the borehole seismic survey is significantly reduced. The system was tested at the Chevron La Habra Test Site using Chevron`s clamped axial borehole vibrator as the seismic source. Several source and receiver fans were acquired using a four-station version of the advanced system. For comparison purposes, an equivalent data set was acquired using a standard analog wall-locking geophone receiver. The test data indicate several enhancements provided by the multi-station receiver relative to the standard, drastically improved signal-to-noise ratio, increased signal bandwidth, the detection of multiple reflectors, and a true 4:1 reduction in survey time.

  13. Rapid analysis of non-uniformly sampled pulsed field gradient data for velocity estimation.

    PubMed

    Raghavan, K; Park, J C; Pavlovskaya, G E; Gibbs, S J

    2001-06-01

    Bretthorst's recent generalization of the Lomb-Scargle periodogram shows that a sufficient statistic for frequency estimation from non-uniformly, but simultaneously sampled quadrature data is equivalent to the FFT of those data with the missing samples replaced by zeros. We have applied this concept to the rapid analysis of pulsed field gradient MRI data which have been non-uniformly sampled in the velocity encoding wave vector q. For a small number of q samples, it is more computationally efficient to calculate the periodogram directly rather than using the FFT algorithm with a large number of zeros. The algorithm we have implemented for finding the peak of the generalized periodogram is simple and robust; it involves repeated apodization and grid searching of the periodogram until the desired velocity resolution is achieved. The final estimate is refined by quadratic interpolation. We have tested the method for fully developed Poiseuille flow of a Newtonian fluid and have demonstrated substantial improvement in the precision of velocity measurement achievable in a fixed acquisition time with non-uniform sampling. The method is readily extendible to multidimensional data. Analysis of a 256 by 256 pixel image with 8 q samples and an effective velocity resolution of better than 1/680 of the Nyquist range requires approximately 1 minute computation time on a 400 MHz SUN Ultrasparc II processor. PMID:11672628

  14. Modeling cavitation in a rapidly changing pressure field - application to a small ultrasonic horn.

    PubMed

    Žnidarčič, Anton; Mettin, Robert; Dular, Matevž

    2015-01-01

    Ultrasonic horn transducers are frequently used in applications of acoustic cavitation in liquids. It has been observed that if the horn tip is sufficiently small and driven at high amplitude, cavitation is very strong, and the tip can be covered entirely by the gas/vapor phase for longer time intervals. A peculiar dynamics of the attached cavity can emerge with expansion and collapse at a self-generated frequency in the subharmonic range, i.e. below the acoustic driving frequency. The term "acoustic supercavitation" was proposed for this type of cavitation Žnidarčič et al. (2014) [1]. We tested several established hydrodynamic cavitation models on this problem, but none of them was able to correctly predict the flow features. As a specific characteristic of such acoustic cavitation problems lies in the rapidly changing driving pressures, we present an improved approach to cavitation modeling, which does not neglect the second derivatives in the Rayleigh-Plesset equation. Comparison with measurements of acoustic supercavitation at an ultrasonic horn of 20kHz frequency revealed a good agreement in terms of cavity dynamics, cavity volume and emitted pressure pulsations. The newly developed cavitation model is particularly suited for simulation of cavitating flow in highly fluctuating driving pressure fields. PMID:24889548

  15. Development of an overnight rapid bovine identification test (ORBIT) for field use.

    PubMed

    Mageau, R P; Cutrufelli, M E; Schwab, B; Johnston, R W

    1984-01-01

    An Overnight Rapid Bovine Identification Test (ORBIT) has been developed as a serological screen test for species verification of raw, whole tissue, bovine meat products. The test, an agar-gel immunodiffusion technique, uses stabilized reagent paper discs and prepared agar plates that have a printed template for correct placement of test components. This test is reliable, practical, economical, and easily performed in the field, such as at a meat import inspection station. The only nonbovine species found to react in the test are the bovine-related species of American bison (buffalo) and water buffalo (from Australia); however, these rare-occurring species do not present a problem for the intended application of the test. Stability of all test components, when stored in a refrigerator, is excellent for at least 1 year. The nature and stability of the test make it suitable for commercial development into test kits which should be highly practical and economical for wide availability and application of this procedure to meat inspection programs concerned with species verification. PMID:6438051

  16. Weakened magnetic braking as the origin of anomalously rapid rotation in old field stars.

    PubMed

    van Saders, Jennifer L; Ceillier, Tugdual; Metcalfe, Travis S; Aguirre, Victor Silva; Pinsonneault, Marc H; García, Rafael A; Mathur, Savita; Davies, Guy R

    2016-01-14

    A knowledge of stellar ages is crucial for our understanding of many astrophysical phenomena, and yet ages can be difficult to determine. As they become older, stars lose mass and angular momentum, resulting in an observed slowdown in surface rotation. The technique of 'gyrochronology' uses the rotation period of a star to calculate its age. However, stars of known age must be used for calibration, and, until recently, the approach was untested for old stars (older than 1 gigayear, Gyr). Rotation periods are now known for stars in an open cluster of intermediate age (NGC 6819; 2.5 Gyr old), and for old field stars whose ages have been determined with asteroseismology. The data for the cluster agree with previous period-age relations, but these relations fail to describe the asteroseismic sample. Here we report stellar evolutionary modelling, and confirm the presence of unexpectedly rapid rotation in stars that are more evolved than the Sun. We demonstrate that models that incorporate dramatically weakened magnetic braking for old stars can--unlike existing models--reproduce both the asteroseismic and the cluster data. Our findings might suggest a fundamental change in the nature of ageing stellar dynamos, with the Sun being close to the critical transition to much weaker magnetized winds. This weakened braking limits the diagnostic power of gyrochronology for those stars that are more than halfway through their main-sequence lifetimes. PMID:26727162

  17. Weakened magnetic braking as the origin of anomalously rapid rotation in old field stars

    NASA Astrophysics Data System (ADS)

    van Saders, Jennifer L.; Ceillier, Tugdual; Metcalfe, Travis S.; Silva Aguirre, Victor; Pinsonneault, Marc H.; García, Rafael A.; Mathur, Savita; Davies, Guy R.

    2016-01-01

    A knowledge of stellar ages is crucial for our understanding of many astrophysical phenomena, and yet ages can be difficult to determine. As they become older, stars lose mass and angular momentum, resulting in an observed slowdown in surface rotation. The technique of ‘gyrochronology’ uses the rotation period of a star to calculate its age. However, stars of known age must be used for calibration, and, until recently, the approach was untested for old stars (older than 1 gigayear, Gyr). Rotation periods are now known for stars in an open cluster of intermediate age (NGC 6819; 2.5 Gyr old), and for old field stars whose ages have been determined with asteroseismology. The data for the cluster agree with previous period-age relations, but these relations fail to describe the asteroseismic sample. Here we report stellar evolutionary modelling, and confirm the presence of unexpectedly rapid rotation in stars that are more evolved than the Sun. We demonstrate that models that incorporate dramatically weakened magnetic braking for old stars can—unlike existing models—reproduce both the asteroseismic and the cluster data. Our findings might suggest a fundamental change in the nature of ageing stellar dynamos, with the Sun being close to the critical transition to much weaker magnetized winds. This weakened braking limits the diagnostic power of gyrochronology for those stars that are more than halfway through their main-sequence lifetimes.

  18. Rapid immunohistochemistry based on alternating current electric field for intraoperative diagnosis of brain tumors.

    PubMed

    Tanino, Mishie; Sasajima, Toshio; Nanjo, Hiroshi; Akesaka, Shiori; Kagaya, Masami; Kimura, Taichi; Ishida, Yusuke; Oda, Masaya; Takahashi, Masataka; Sugawara, Taku; Yoshioka, Toshiaki; Nishihara, Hiroshi; Akagami, Yoichi; Goto, Akiteru; Minamiya, Yoshihiro; Tanaka, Shinya

    2015-01-01

    Rapid immunohistochemistry (R-IHC) can contribute to the intraoperative diagnosis of central nervous system (CNS) tumors. We have recently developed a new IHC method based on an alternating current electric field to facilitate the antigen-antibody reaction. To ensure the requirement of R-IHC for intraoperative diagnosis, 183 cases of CNS tumors were reviewed regarding the accuracy rate of diagnosis without R-IHC. The diagnostic accuracy was 90.7 % (166/183 cases) [corrected] in which definitive diagnoses were not provided in 17 cases because of the failure of glioma grading and differential diagnosis of lymphoma and glioma. To establish the clinicopathological application, R-IHC for frozen specimens was compared with standard IHC for permanent specimens. 33 gliomas were analyzed, and the Ki-67/MIB-1 indices of frozen specimens by R-IHC were consistent with the grade and statistically correlated with those of permanent specimens. Thus, R-IHC provided supportive information to determine the grade of glioma. For discrimination between glioma and lymphoma, R-IHC was able to provide clear results of CD20 and Ki-67/MIB-1 in four frozen specimens of CNS lymphoma as well as standard IHC. We conclude that the R-IHC for frozen specimens can provide important information for intraoperative diagnosis of CNS tumors. PMID:24807101

  19. Rapid full-field OCT assessment of clinical tissue specimens (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Dalimier, Eugénie; Harms, Fabrice; Brossollet, Charles; Benoit, Emilie; Martins, Franck; Boccara, Claude A.

    2016-03-01

    FFOCT (Full Field Optical Coherence Tomography) is a novel optical technology that gives access to very high resolution tomography images of biological tissues within minutes, non-invasively. This makes it an attractive tool to bridge the gap between medical imaging modalities (MRI, ultrasound, CT) used for cancer lesion identification or targeting and histological diagnosis. Clinical tissue specimens, such as surgical cancer margins or biopsies, can potentially be assessed rapidly, by the clinician, in the aim to help him decide on the course of action. A fast FFOCT prototype was built, that provides 1cm2 images with 1 µm resolution in 1 minute, and can accommodate samples up to 50mm diameter. Specific work was carried out to implement a large sample holder, high-speed image acquisition system, optimized scanning, and accelerated GPU tiles stitching. Results obtained on breast, urology, and digestive tissues show the efficiency of the technique for the detection of cancer on clinical tissue specimens, and reinforce the clinical relevance of the technique. The technical and clinical results show that the fast FFOCT system can successfully be used for a fast assessment of cancer excision margins or biopsies providing a very valuable tool in the clinical environment.

  20. Net ecosystem exchange, gross primary production, and ecosystem respiration of carbon dioxide during barley growing season in rice-barley paddy field of Korea

    NASA Astrophysics Data System (ADS)

    Jung, M.; Shim, K.; Min, S.; Kim, Y.; Kim, S.; So, K.

    2013-12-01

    This study was conducted to measure carbon dioxide exchange between customarily cultivated rice-barley double cropping paddy field and the atmosphere during barley growing season (October 2012 and June 2013) and to estimate carbon dioxide fluxes using agro-meteorological factors (temperature, net radiation etc. ) and barley biomass. The carbon dioxide fluxes were quantified by eddy covariance technique in paddy fields with rice-barley double cropping system, located at the Gimje flux site in the southwestern coast of Korea. The total values of net ecosystem carbon dioxide exchange (NEE), gross primary production (GPP), and ecosystem respiration (Re) were -100.6, 782.7, and 682.5 g C m-2 during barley growing season, respectively. The NEE was tended to keep between 0 and 5 g C m-2 d-1 from sowing date (Oct. 21, 2012) to winter rest stage (Dec. 3, 2012 to Feb. 22, 2013), and gradually decreased in tillering stage (Feb. 23, 2013 to May 5, 2013) with its maximum around heading date, and then started to increase in ripening stage (May 6, 2013 to Jun. 8, 2013). The soil temperature was strongly correlated with the Re (r2=0.86), while the net radiation showed the weak relationship with the GPP during the emergence, seedling, and winter rest stage. The aboveground biomass of barley was significantly correlated with the values of NEE (r2=0.79), GPP (r2=0.83), and Re (r2=0.77), respectively.

  1. Dielectric Resonator-Based Flow and Stopped-Flow EPR with Rapid Field Scanning: A Methodology for Increasing Kinetic Information

    NASA Astrophysics Data System (ADS)

    Sienkiewicz, Andrzej; Ferreira, Ana Maria da Costa; Danner, Birgit; Scholes, Charles P.

    1999-02-01

    We report methodology which combines recently developed dielectric resonator-based, rapid-mix, stopped-flow EPR (appropriate for small, aqueous, lossy samples) with rapid scanning of the external (Zeeman) magnetic field where the scanning is preprogrammed to occur at selected times after the start of flow. This methodology gave spectroscopic information complementary to that obtained by stopped-flow EPR at single fields, and with low reactant usage, it yielded more graphic insight into the time evolution of radical and spin-labeled species. We first used the ascorbyl radical as a test system where rapid scans triggered after flow was stopped provided "snapshots" of simultaneously evolving and interacting radical species. We monitored ascorbyl radical populations either as brought on by biologically damaging peroxynitrite oxidant or as chemically and kinetically interacting with a spectroscopically overlapping nitroxide radical. In a different biophysical application, where a spin-label lineshape reflected rapidly changing molecular dynamics of folding spin-labeled protein, rapid scan spectra were taken during flow with different flow rates and correspondingly different times after the mixing-induced inception of protein folding. This flow/rapid scan method is a means for monitoring early immobilization of the spin probe in the course of the folding process.

  2. Evolution of Rhyolite at Laguna del Maule, a Rapidly Inflating Volcanic Field in the Southern Andes

    NASA Astrophysics Data System (ADS)

    Andersen, N. L.; Singer, B. S.; Jicha, B. R.; Hildreth, E. W.; Fierstein, J.; Rogers, N. W.

    2012-12-01

    The Laguna del Maule Volcanic Field (LdM) is host to both the foremost example of post-glacial rhyolitic volcanism in the southern Andes and rapid, ongoing crustal deformation. The flare-up of high-silica eruptions was coeval with deglaciation at 24 ka. Rhyolite and rhyodacite domes and coulees totaling 6.5 km3 form a 20 km ring around the central lake basin. This spatial and temporal concentration of rhyolite is unprecedented in the history of the volcanic field. Colinear major and trace element variation suggests these lavas share a common evolutionary history (Hildreth et al., 2010). Moreover, geodetic observations (InSAR & GPS) have identified rapid inflation centered in the western side of the rhyolite dome ring at a rate of 17 cm/year for five years, which has accelerated to 30 cm/yr since April 2012. The best fit to the geodetic data is an expanding magma body located at 5 km depth (Fournier et al., 2010; Le Mevel, 2012). The distribution of high-silica volcanism, most notably geochemically similar high-silica rhyolite lavas erupted 12 km apart of opposite sides of the lake within a few kyr of each other, raises the possibility that the shallow magma intrusion represents only a portion of a larger rhyolitic body, potentially of caldera forming dimensions. We aim to combine petrologic models with a precise geochronology to formulate a model of the evolution of the LdM magma system to its current state. New 40Ar/39Ar age determinations show rhyolitic volcanism beginning at 23 ka with the eruption of the Espejos rhyolite, followed by the Cari Launa Rhyolite at 14.5 ka, two flows of the Barrancas complex at 6.4 and 3.9 ka, and the Divisoria rhyolite at 2.2 ka. In contrast, significant andesitic and dacitic volcanism is largely absent from the central basin of LdM since the early post-glacial period suggesting a coincident basin-wide evolution from andesite to dacite to rhyolite and is consistent with a shallow body of low-density rhyolite blocking the eruption

  3. The ultra-rapid synthesis of 2D graphitic carbon nitride nanosheets via direct microwave heating for field emission.

    PubMed

    Yu, Yongzhi; Zhou, Qing; Wang, Jigang

    2016-02-16

    The 2D g-C3N4 nanosheets were ultra-rapidly prepared via a direct microwave heating approach. The as-synthesized g-C3N4 possessed a large surface area, few stacking layers, a large aspect ratio and an enlarged bandgap. As a consequence, the excellent field emission properties of 2D g-C3N4 nanosheets were exhibited with extremely low turn-on fields. PMID:26879135

  4. Diagnostic performance characteristics of a rapid field test for anthrax in cattle.

    PubMed

    Muller, Janine; Gwozdz, Jacek; Hodgeman, Rachel; Ainsworth, Catherine; Kluver, Patrick; Czarnecki, Jill; Warner, Simone; Fegan, Mark

    2015-07-01

    Although diagnosis of anthrax can be made in the field with a peripheral blood smear, and in the laboratory with bacterial culture or molecular based tests, these tests require either considerable experience or specialised equipment. Here we report on the evaluation of the diagnostic sensitivity and specificity of a simple and rapid in-field diagnostic test for anthrax, the anthrax immunochromatographic test (AICT). The AICT detects the protective antigen (PA) component of the anthrax toxin present within the blood of an animal that has died from anthrax. The test provides a result in 15min and offers the advantage of avoiding the necessity for on-site necropsy and subsequent occupational risks and environmental contamination. The specificity of the test was determined by testing samples taken from 622 animals, not infected with Bacillus anthracis. Diagnostic sensitivity was estimated on samples taken from 58 animals, naturally infected with B. anthracis collected over a 10-year period. All samples used to estimate the diagnostic sensitivity and specificity of the AICT were also tested using the gold standard of bacterial culture. The diagnostic specificity of the test was estimated to be 100% (99.4-100%; 95% CI) and the diagnostic sensitivity was estimated to be 93.1% (83.3-98.1%; 95% CI) (Clopper-Pearson method). Four samples produced false negative AICT results. These were among 9 samples, all of which tested positive for B. anthracis by culture, where there was a time delay between collection and testing of >48h and/or the samples were collected from animals that were >48h post-mortem. A statistically significant difference (P<0.001; Fishers exact test) was found between the ability of the AICT to detect PA in samples from culture positive animals <48h post-mortem, 49 of 49, Se=100% (92.8-100%; 95% CI) compared with samples tested >48h post-mortem 5 of 9 Se=56% (21-86.3%; 95% CI) (Clopper-Pearson method). Based upon these results a post hoc cut-off for use of

  5. Field evaluation of a rapid diagnostic test (Parascreen™) for malaria diagnosis in the Peruvian Amazon

    PubMed Central

    2010-01-01

    Background The rapid diagnostic tests for malaria (RDT) constitute a fast and opportune alternative for non-complicated malaria diagnosis in areas where microscopy is not available. The objective of this study was to validate a RDT named Parascreen™ under field conditions in Iquitos, department of Loreto, Peru. Parascreen™ is a RDT that detects the histidine-rich protein 2 (HRP2) antigen from Plasmodium falciparum and lactate deshydrogenase from all Plasmodium species. Methods Parascreen™ was compared with microscopy performed by experts (EM) and polymerase chain reaction (PCR) using the following indicators: sensitivity (Se), specificity (Sp), positive (PV+) and negative predictive values (PV-), positive (LR+) and negative likehood ratio (LR-). Results 332 patients with suspected non-complicated malaria who attended to the MOH health centres were enrolled between October and December 2006. For P. falciparum malaria, Parascreen™ in comparison with EM, had Se: 53.5%, Sp: 98.7%, PV+: 66.7%, PV-: 97.8%, LR+: 42.27 and LR-: 0.47; and for non-P. falciparum malaria, Se: 77.1%, Sp: 97.6%, PV+: 91.4%, PV-: 92.7%, LR+: 32.0 and LR-: 0.22. The comparison of Parascreen™ with PCR showed, for P. falciparum malaria, Se: 81.8%, Sp: 99.1%, PV+: 75%, PV-: 99.4, LR+: 87.27 and LR-: 0.18; and for non-P. falciparum malaria Se: 76.1%, Sp: 99.2%, PV+: 97.1%, PV-: 92.0%, LR+: 92.51 and LR-: 0.24. Conclusions The study results indicate that Parascreen™ is not a valid and acceptable test for malaria diagnosis under the field conditions found in the Peruvian Amazon. The relative proportion of Plasmodium species, in addition to the genetic characteristics of the parasites in the area, must be considered before applying any RDT, especially after the finding of P. falciparum malaria parasites lacking pfhrp2 gene in this region. PMID:20529273

  6. Analysis of the Precursor rRNA Fractions of Rapidly Growing Mycobacteria: Quantification by Methods That Include the Use of a Promoter (rrnA P1) as a Novel Standard†

    PubMed Central

    Menéndez, María del Carmen; Rebollo, María José; Núñez, María del Carmen; Cox, Robert A.; García, María Jesús

    2005-01-01

    Mycobacterial species are able to control rRNA production through variations in the number and strength of promoters controlling their rrn operons. Mycobacterium chelonae and M. fortuitum are members of the rapidly growing mycobacterial group. They carry a total of five promoters each, encoded, respectively, by one and two rrn operons per genome. Quantification of precursor rrn transcriptional products (pre-rrn) has allowed detection of different promoter usage during cell growth. Bacteria growing in several culture media with different nutrient contents were compared. Balanced to stationary phases were analyzed. Most promoters were found to be used at different levels depending on the stage of bacterial growth and the nutrient content of the culture medium. Some biological implications are discussed. Sequences of the several promoters showed motifs that could be correlated to their particular level of usage. A product corresponding to the first rrnA promoter in both species, namely, rrnA P1, was found to contribute at a low and near-constant level to pre-rRNA synthesis, regardless of the culture medium used and the stage of growth analyzed. This product was used as a standard to quantitate rRNA gene expression by real-time PCR when M. fortuitum infected macrophages. It was shown that this bacterium actively synthesizes rRNA during the course of infection and that one of its rrn operons is preferentially used under such conditions. PMID:15629925

  7. Three-Dimensional Evaluation of the Upper Airway Morphological Changes in Growing Patients with Skeletal Class III Malocclusion Treated by Protraction Headgear and Rapid Palatal Expansion: A Comparative Research

    PubMed Central

    Liu, Ju; Wu, Zizhong; Xie, Yongtao; Li, Liang; Liu, Hong; Guo, Tiantian; Chen, Chen; Zhang, Shijie

    2015-01-01

    Objective The aim of this study was to evaluate the morphological changes of upper airway after protraction headgear and rapid maxillary expansion (PE) treatment in growing patients with Class III malocclusion and maxillary skeletal deficiency compared with untreated Class III patients by cone-beam computed tomography (CBCT). Methods Thirty growing patients who have completed PE therapy were included in PE group. The control group (n = 30) was selected from the growing untreated patients with the same diagnosis. The CBCT scans of the pre-treatment (T1) and post-treatment (T2) of PE group and the control group were collected. Reconstruction and registration of the 3D models of T1 and T2 were completed. By comparing the data obtained from T1, T2 and control group, the morphological changes of the upper airway during the PE treatment were evaluated. Results Comparing with the data from T1 group, the subspinale (A) of maxilla and the upper incisor (UI) of the T2 group were moved in the anterior direction. The gnathion (Gn) of mandible was moved in the posterior-inferior direction. The displacement of the hyoid bone as well as the length and width of dental arch showed significant difference. The volume and mean cross-sectional area of nasopharynx, velopharynx and glossopharynx region showed significant difference. The largest anteroposterior/the largest lateral (AP/LR) ratios of the velopharynx and glossopharynx were increased, but the AP/LR ratio of the hypopharynx was decreased. In addition, the length and width of the maxillary dental arch, the displacement of the hyoid bone, the volume of nasopharynx and velopharynx, and the AP/LR ratio of the hypopharynx and velopharynx showed significant difference between the data from control and T2 group. Conclusion The PE treatment of Class Ⅲ malocclusion with maxillary skeletal hypoplasia leads to a significant increase in the volume of nasopharynx and velopharynx. PMID:26252015

  8. A Method to Teach Age-Specific Demography with Field Grown Rapid Cycling "Brassica rapa" (Wisconsin Fast Plants)

    ERIC Educational Resources Information Center

    Kelly, Martin G.; Terrana, Sebastian

    2004-01-01

    In this paper, we demonstrate that rapid cycling "Brassica rapa" (Wisconsin Fast Plants) can be used in inquiry-based, student ecological fieldwork. We are the first to describe age-specific survival for field-grown Fast Plants and identify life history traits associated with individual survival. This experiment can be adapted by educators as a…

  9. Growing Spaceships?

    NASA Technical Reports Server (NTRS)

    Robertson, Glen A.

    2013-01-01

    NASA currently has a program called the Space Synthetic Biology Project. Synthetic Biology or SynBio is the design and construction of new biological functions and systems not found in nature. Four NASA field centers, along with experts from industry and academia, have been partnering on the Space Synthetic Biology Project and are working on new breakthroughs in this increasingly useful pursuit, which is part a science discipline and part engineering. Led by researchers at NASA s Ames Research Center, the team is studying how this powerful new tool can help NASA now and in the future. The project was created to harness biology in reliable, robust, engineered systems to support the agency s exploration and science missions, to improve life on Earth and to help shape NASA's future. The program also is intended to contribute foundational tools to the synthetic biology research community.

  10. Rapid wide-field Mueller matrix polarimetry imaging based on four photoelastic modulators with no moving parts.

    PubMed

    Alali, Sanaz; Gribble, Adam; Vitkin, I Alex

    2016-03-01

    A new polarimetry method is demonstrated to image the entire Mueller matrix of a turbid sample using four photoelastic modulators (PEMs) and a charge coupled device (CCD) camera, with no moving parts. Accurate wide-field imaging is enabled with a field-programmable gate array (FPGA) optical gating technique and an evolutionary algorithm (EA) that optimizes imaging times. This technique accurately and rapidly measured the Mueller matrices of air, polarization elements, and turbid phantoms. The system should prove advantageous for Mueller matrix analysis of turbid samples (e.g., biological tissues) over large fields of view, in less than a second. PMID:26974110

  11. Field Evaluation of a Semiautomated Method for Rapid and Simple Analysis of Recreational Water Microbiological Quality

    PubMed Central

    Anglès d'Auriac, Marc B.; Roberts, Hildegarde; Shaw, Terri; Sirevåg, Reidun; Hermansen, Leonila Fajardo; Berg, James D.

    2000-01-01

    An early warning system using a rapid enzymatic semiautomated method suitable for fecal coliform detection in recreational waters within 8 h was developed further and evaluated in this study. This rapid method was compared to the standard method followed in the United Kingdom. We used 1,011 samples originating from 206 different locations in Wales. When we assessed the presence or absence of fecal coliforms, targeting very low levels of contamination, we obtained 83.9% agreement between the rapid method and the lauryl sulfate broth-membrane filtration technique, whereas direct confirmation of the samples processed by the rapid method showed 89.3% agreement. Environmental enzymatic background activity was found to be the main limiting factor for this method. Owing to a specific and integrated handling of the results by the software of the instrument, the percentage of false-positive results (a consequence of enzymatic background) was successfully limited to 2.9% by the direct confirmation evaluation. However, 7.8% false-negative results due to “late-growers” had to be accepted in order to produce results within a working day. At present, the method can be used in a more conservative way to assess the environmental threshold of 100 CFU of fecal coliforms per 100 ml in recreational waters. The implications of our findings with regard to the applicability of rapid enzymatic methods are discussed. PMID:11010890

  12. Large-timestep techniques for particle-in-cell simulation of systems with applied fields that vary rapidly in space

    SciTech Connect

    Friedman, A.; Grote, D.P.

    1996-10-01

    Under conditions which arise commonly in space-charge-dominated beam applications, the applied focusing, bending, and accelerating fields vary rapidly with axial position, while the self-fields (which are, on average, comparable in strength to the applied fields) vary smoothly. In such cases it is desirable to employ timesteps which advance the particles over distances greater than the characteristic scales over which the applied fields vary. Several related concepts are potentially applicable: sub-cycling of the particle advance relative to the field solution, a higher-order time-advance algorithm, force-averaging by integration along approximate orbits, and orbit-averaging. We report on our investigations into the utility of such techniques for systems typical of those encountered in accelerator studies for heavy-ion beam-driven inertial fusion.

  13. Bioaccumulation and translocation of metals in the natural vegetation growing on fly ash lagoons: a field study from Santaldih thermal power plant, West Bengal, India.

    PubMed

    Maiti, Subodh Kumar; Jaiswal, Shishir

    2008-01-01

    A field study was conducted in the fly ash lagoons of Santandih Thermal Power Plant located in West Bengal (India) to find out total, EDTA and DTPA extractable metals in fly ash and their bioaccumulation in root and shoot portion of the naturally growing vegetation. Fly ash sample has alkaline pH and low conductivity. The concentration of total Cu, Zn, Pb and Ni were found higher than weathered fly ash and natural soil, where as Co, Cd and Cr were found traces. Five dominant vegetation namely, Typha latifolia, Fimbristylis dichotoma, Amaranthus defluxes, Saccharum spontaenum and Cynodon dactylon were collected in the winter months (November-December). Bioaccumulation of metals in root and shoot portions were found varied significantly among the species, but all concentration were found within toxic limits. Correlation between total, DTPA and EDTA extractable metals viz. root and shoot metals concentration were studied. Translocation factor (TF) for Cu, Zn and Ni were found less than unity, indicates that these metals are immobilized in the root part of the plants. Metals like Mn have TF greater than unity. The study infers that natural vegetation removed Mn by phytoextraction mechanisms (TF > 1), while other metals like Zn, Cu, Pb and Ni were removed by rhizofiltration mechanisms (TF < 1). The field study revealed that T. latifolia and S. spontaenum plants could be used for bioremediation of fly ash lagoon. PMID:17429748

  14. Rapid quantification of soilborne pathogen communities in wheat-based long-term field experiments

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Traditional isolation and quantification of inoculum density is difficult for most soilborne pathogens. Quantitative PCR methods have been developed to rapidly identify and quantify many of these pathogens using a single DNA extract from soil. Rainfed experiments operated continuously for up to 84 y...

  15. Age-related effects of bilateral frontal eye fields lesions on rapid eye movements during REM sleep in rhesus monkeys.

    PubMed

    Yu, Shan; Liu, Ning; Zeng, Tao; Tian, Shaohua; Chen, Nanhui; Zhou, Yifeng; Ma, Yuanye

    2004-08-01

    Rapid eye movement (REM) is one of the most characteristic features of REM sleep, but the mechanisms underlying its regulation remain unclear. The present study aims to investigate whether the frontal eye field (FEF) is involved in the regulation of the rapid eye movements during REM sleep. To address this question, we ablated the FEF in four rhesus monkeys and observed the effects of the lesions on sleep architecture. After lesions, two adult monkeys did not show any lesion effect. However, in the other two adolescent monkeys, both the total duration and percentage of the rapid eye movements during REM sleep were decreased moderately. The result suggests that the relation between the FEF and the regulation of the rapid eye movements during REM sleep may be affected by age factor, also indicating that both the functions of the FEF and the mechanisms underlying the control of rapid eye movements during REM sleep might not be the same throughout the whole life span of an animal. PMID:15265590

  16. Effective quantum Brownian dynamics in presence of a rapidly oscillating space-dependent time-periodic field.

    PubMed

    Shit, Anindita; Chattopadhyay, Sudip; Chaudhuri, Jyotipratim Ray

    2011-06-01

    We explore the Brownian dynamics in the quantum regime (by investigating the quantum Langevin and Smoluchowski equations) in terms of an effective time-independent Hamiltonian in the presence of a rapidly oscillating field. We achieve this by systematically expanding the time-dependent system-reservoir Hamiltonian in the inverse of driving frequency with a systematic time-scale separation and invoking a quantum gauge transformation within the framework of Floquet theorem. PMID:21797289

  17. How to grow tomatoes.

    PubMed

    Kimura, Seisuke; Sinha, Neelima

    2008-01-01

    INTRODUCTIONTomatoes can be easily grown in a field, in a greenhouse, or in a growth cabinet. They need acidic soil (pH 6.0-6.8), a lot of light, and water. The optimum temperature for growing tomato plants and fruit is 18°C-24°C. This protocol describes how to germinate tomato seeds, cultivate adult plants, and harvest seeds from fruit. PMID:21356721

  18. EMF Rapid Program Engineering Projects, Project 1, Development of Recommendations for Guidelines for Field Source Measurement

    SciTech Connect

    Electric Research and Management, Inc.

    1997-03-11

    The goal of this project is to develop a protocol for measuring the electric and magnetic fields around sources. Data from these measurements may help direct future biological effects research by better defining the complexity of magnetic and electric fields to which humanity is exposed, as well asprovide the basis for rigorous field exposure analysis and risk assessment once the relationship between field exposure and biological response. is better understood. The data base also should have sufficient spatial and temporal characteristics to guide electric and magnetic field management. The goal of Task A is to construct a set of characteristics that would be ideal to have for guiding and interpreting biological studies and for focusing any future effort at field management. This ideal set will then be quantified and reduced according to the availability (or possible development of) instrumentation to measure the desired characteristics. Factors that also will be used to define pragmatic data sets will be the cost of collecting the data, the cost of developing an adequate data base, and the needed precision in measuring specific characteristics. A field, electric or magnetic, will always be ,some function of time and space. The first step in this section of the protocol development will be to determine what span of time and what portion of space are required to quantify the electric and magnetic fields around sources such as appliances and electrical apparatus. Constraints on time will be set by examining measurement limitations and biological data requirements.

  19. Rapid determination of fluid viscosity using low-field two-dimensional NMR.

    PubMed

    Deng, Feng; Xiao, Lizhi; Chen, Weiliang; Liu, Huabing; Liao, Guangzhi; Wang, Mengying; Xie, Qingming

    2014-10-01

    The rapid prediction of fluid viscosity, especially the fluid in heavy-oil petroleum reservoirs, is of great importance for oil exploration and transportation. We suggest a new method for rapid prediction of fluid viscosity using two-dimensional (2D) NMR relaxation time distributions. DEFIR, Driven-Equilibrium Fast-Inversion Recovery, a new pulse sequence for rapid measurement of 2D relaxation times, is proposed. The 2D relation between the ratio of transverse relaxation time to longitudinal relaxation time (T1/T2) and T1 distribution of fluid are obtained by means of DEFIR with only two one-dimensional measurements. The measurement speed of DEFIR pulse sequence over 2 times as fast as that of the traditional 2D method. Using Bloembergen theory, the relation between the distributions and fluid viscosity is found. Precise method for viscosity prediction is then established. Finally, we apply this method to a down-hole NMR fluid analysis system and realized on-site and on-line prediction of viscosity for formation fluids. The results demonstrated that the new method for viscosity prediction is efficient and accurate. PMID:25218115

  20. Methods for automatized detection of rapid changes in lateral boundary condition fields for NWP limited area models

    NASA Astrophysics Data System (ADS)

    Tudor, M.

    2015-08-01

    Three-hourly temporal resolution of lateral boundary data for limited area models (LAMs) can be too infrequent to resolve rapidly moving storms. This problem is expected to be worse with increasing horizontal resolution. In order to detect intensive disturbances in surface pressure moving rapidly through the model domain, a filtered surface pressure field (MCUF) is computed operationally in the ARPEGE global model of Météo France. The field is distributed in the coupling files along with conventional meteorological fields used for lateral boundary conditions (LBCs) for the operational forecast using limited area model ALADIN (Aire Limitée Adaptation dynamique Développement InterNational) in the Meteorological and Hydrological Service of Croatia (DHMZ). Here an analysis is performed of the MCUF field for the LACE coupling domain for the period from 23 January 2006, when it became available, until 15 November 2014. The MCUF field is a good indicator of rapidly moving pressure disturbances (RMPDs). Its spatial and temporal distribution can be associated with the usual cyclone tracks and areas known to be supporting cyclogenesis. An alternative set of coupling files from the IFS operational run in the European Centre for Medium-Range Weather Forecasts (ECMWF) is also available operationally in DHMZ with 3-hourly temporal resolution, but the MCUF field is not available. Here, several methods are tested that detect RMPDs in surface pressure a posteriori from the IFS model fields provided in the coupling files. MCUF is computed by running ALADIN on the coupling files from IFS. The error function is computed using one-time-step integration of ALADIN on the coupling files without initialization, initialized with digital filter initialization (DFI) or scale-selective DFI (SSDFI). Finally, the amplitude of changes in the mean sea level pressure is computed from the fields in the coupling files. The results are compared to the MCUF field of ARPEGE and the results of same

  1. Tsunami Rapid Assessment Using High Resolution Images and Field Surveys: the 2010 , Central Chile, and the 2011, Tohoku Tsunamis

    NASA Astrophysics Data System (ADS)

    Ramirez-Herrera, M.; Navarrete-Pacheco, J.; Lagos, M.; Arcas, D.

    2013-12-01

    Recent extreme tsunamis have shown their major socioeconomic impact and imprint in the coastal landscape. Extensive destruction, erosion, sediment transport and deposition resculpted coastal landscape within few minutes along hundreds of kilometers of the Central Chile, in 2010, and the Northeast coast of Japan, in 2011. In the central coast of Chile, we performed a post-tsunami survey a week after the tsunami due to access restrictions. Our observations focus on the inundation and geomorphic effects of the 2010 tsunami and included an air reconnaissance flight, analysis of pre- and post-event low fly air-photographs and Google Earth satellite images, together with ground reconnaissance and mapping in the field, including topographic transects, during a period of 13 days. Eyewitness accounts enabled us to confirm our observations on effects produced by the tsunami along ~ 500km along the coastline landscape in central Chile For the Tohoku case study, we assessed in a day tsunami inundation distances and runup heights using satellite data (very high resolution satellite images from the GeoEye1 satellite and from the DigitalGlobe worldview through the Google crisis response project, SRTM and ASTER GDEM) of the Tohoku region, Northeast Japan. Field survey data by Japanese, other international scientists and us validated our results. The rapid assessment of damage using high-resolution images has proven to be an excellent tool neccessary for effcient postsunami surveys as well as for rapid assessment of areas with access restrictions. All countries, in particular those with less access to technology and infrastructure, can benefit from the use of freely available satellite imagery and DEMs for an initial, pre-field survey, rapid estimate of inundated areas, distances and runup, tsunami effects in the coastal geomorphology and for assisting in hazard management and mitigation after a natural disaster. These data provide unprecedented opportunities for rapid assessment

  2. Rapid estimation of Aedes aegypti population size using simulation modeling, with a novel approach to calibration and field validation.

    PubMed

    Williams, Craig R; Johnson, Petrina H; Long, Sharron A; Rapley, Luke P; Ritchie, Scott A

    2008-11-01

    New approaches for control of the dengue vector Aedes aegypti (L.) are being developed, including the potential introduction of life-shortening symbiont bacteria into field populations and the release of transgenic strains with reduced vector competency. With these new approaches comes the need for rapid estimations of existing field population size. Here, we describe the use of simulation modeling with container-inhabiting mosquito simulation (CIMSiM) for estimation of Ae. aegypti pupal crop size in north Queensland, Australia. CIMSiM was calibrated for local conditions by deploying "sentinel key containers" (tire, 2-liter plastic bucket, 0.6-liter pot plant base, and tarpaulin indentation) in which water flux and pupal productivity were studied for 72 d. Iterative adjustment of CIMSiM parameters was used to fit model outputs to match that of sentinel key containers. This calibrated model was then used in a blind field validation, in which breeding container and local meteorological data were used to populate CIMSiM, and model outputs were compared with a field pupal survey. Actual pupae per ha during two 10-d periods in 2007 fell within 95% confidence intervals of simulated pupal crop estimates made by 10 replicate simulations in CIMSiM, thus providing a successful field validation. Although the stochasticity of the field environment can never be wholly simulated, CIMSiM can provide field-validated estimates of pupal crop in a timely manner by using simple container surveys. PMID:19058645

  3. Phenotypic and molecular fingerprinting of fast growing rhizobia of field-grown pigeonpea from the eastern edge of the Brazilian Pantanal.

    PubMed

    Costa, F M; Schiavo, J A; Brasil, M S; Leite, J; Xavier, G R; Fernandes, P I

    2014-01-01

    The aim of this study was to evaluate the diversity of rhizobial isolates obtained from root nodules of pigeonpea plants grown at the eastern edge of the Brazilian Pantanal. The bacterial isolates were isolated from root nodules from field-growing pigeonpea grown in two rural settlements of the Aquidauana municipality. The bacterial isolates were characterized phenotypically by means of cultural characterization, intrinsic antibiotic resistance (IAR), salt and high incubation temperature tolerance, and amylolytic and cellulolytic activities. The molecular characterization of the bacterial isolates was carried out using amplified ribosomal DNA restriction analysis (ARDRA) and Box-polymerase chain reaction (PCR) techniques. In addition, the symbiotic performance of selected rhizobial isolates was evaluated in a greenhouse experiment using sterile substrate. The phenotypic characterization revealed that the bacterial strains obtained from pigeonpea root nodules presented characteristics that are uncommon among rhizobial isolates, indicating the presence of new species nodulating the pigeonpea plants in the Brazilian Pantanal. The molecular fingerprinting of these bacterial isolates also showed a highly diverse collection, with both techniques revealing less than 25% similarity among bacterial isolates. The evaluation of symbiotic performance also indicated the presence of microorganisms with high potential to increase the growth and nitrogen content at the shoots of pigeonpea plants. The results obtained in this study indicate the presence of a highly diversified rhizobial community nodulating the pigeonpea at the eastern edge of the Brazilian Pantanal. PMID:24535875

  4. Rapid computation of the amplitude and phase of tightly focused optical fields distorted by scattering particles.

    PubMed

    Ranasinghesagara, Janaka C; Hayakawa, Carole K; Davis, Mitchell A; Dunn, Andrew K; Potma, Eric O; Venugopalan, Vasan

    2014-07-01

    We develop an efficient method for accurately calculating the electric field of tightly focused laser beams in the presence of specific configurations of microscopic scatterers. This Huygens-Fresnel wave-based electric field superposition (HF-WEFS) method computes the amplitude and phase of the scattered electric field in excellent agreement with finite difference time-domain (FDTD) solutions of Maxwell's equations. Our HF-WEFS implementation is 2-4 orders of magnitude faster than the FDTD method and enables systematic investigations of the effects of scatterer size and configuration on the focal field. We demonstrate the power of the new HF-WEFS approach by mapping several metrics of focal field distortion as a function of scatterer position. This analysis shows that the maximum focal field distortion occurs for single scatterers placed below the focal plane with an offset from the optical axis. The HF-WEFS method represents an important first step toward the development of a computational model of laser-scanning microscopy of thick cellular/tissue specimens. PMID:25121440

  5. Rapid computation of the amplitude and phase of tightly focused optical fields distorted by scattering particles

    PubMed Central

    Ranasinghesagara, Janaka C.; Hayakawa, Carole K.; Davis, Mitchell A.; Dunn, Andrew K.; Potma, Eric O.; Venugopalan, Vasan

    2014-01-01

    We develop an efficient method for accurately calculating the electric field of tightly focused laser beams in the presence of specific configurations of microscopic scatterers. This Huygens–Fresnel wave-based electric field superposition (HF-WEFS) method computes the amplitude and phase of the scattered electric field in excellent agreement with finite difference time-domain (FDTD) solutions of Maxwell’s equations. Our HF-WEFS implementation is 2–4 orders of magnitude faster than the FDTD method and enables systematic investigations of the effects of scatterer size and configuration on the focal field. We demonstrate the power of the new HF-WEFS approach by mapping several metrics of focal field distortion as a function of scatterer position. This analysis shows that the maximum focal field distortion occurs for single scatterers placed below the focal plane with an offset from the optical axis. The HF-WEFS method represents an important first step toward the development of a computational model of laser-scanning microscopy of thick cellular/tissue specimens. PMID:25121440

  6. Rapid evolution of parasite resistance in a warmer environment: insights from a large scale field experiment.

    PubMed

    Mateos-Gonzalez, Fernando; Sundström, L Fredrik; Schmid, Marian; Björklund, Mats

    2015-01-01

    Global climate change is expected to have major effects on host-parasite dynamics, with potentially enormous consequences for entire ecosystems. To develop an accurate prognostic framework, theoretical models must be supported by empirical research. We investigated potential changes in host-parasite dynamics between a fish parasite, the eyefluke Diplostomum baeri, and an intermediate host, the European perch Perca fluviatilis, in a large-scale semi-enclosed area in the Baltic Sea, the Biotest Lake, which since 1980 receives heated water from a nuclear power plant. Two sample screenings, in two consecutive years, showed that fish from the warmer Biotest Lake were now less parasitized than fish from the Baltic Sea. These results are contrasting previous screenings performed six years after the temperature change, which showed the inverse situation. An experimental infection, by which perch from both populations were exposed to D. baeri from the Baltic Sea, revealed that perch from the Baltic Sea were successfully infected, while Biotest fish were not. These findings suggest that the elevated temperature may have resulted, among other outcomes, in an extremely rapid evolutionary change through which fish from the experimental Biotest Lake have gained resistance to the parasite. Our results confirm the need to account for both rapid evolutionary adaptation and biotic interactions in predictive models, and highlight the importance of empirical research in order to validate future projections. PMID:26035300

  7. Rapid Changes in the Genetic Composition of Stagonosporopsis tanaceti Population in Australian Pyrethrum Fields.

    PubMed

    Vaghefi, Niloofar; Hay, Frank S; Ades, Peter K; Pethybridge, Sarah J; Ford, Rebecca; Taylor, Paul W J

    2015-03-01

    A novel set of microsatellite markers were developed and employed for geographical and temporal population analyses of Stagonosporopsis tanaceti, the cause of ray blight of pyrethrum in Australia. Genotyping of 407 isolates, using 13 markers, suggested an asexual mode of reproduction with significant linkage disequilibrium and high levels of clonality. Low geographical differentiation and widespread distribution of a few multilocus genotypes (MLGs), in the absence of airborne ascospores, suggested the role of human-mediated movement of seed as a major means of long-distance pathogen dispersal. The genetic composition of S. tanaceti was stable for a decade then changed rapidly in only 2 years. Bayesian clustering analyses and minimum spanning networks determined only two major clonal lineages in and prior to 2010. However, in 2012, a previously unobserved cluster of MLGs was detected, which significantly increased in frequency and displaced the historically dominant MLGs by 2013. This rapid change in the genetic composition of S. tanaceti could indicate a second introduction then a selective sweep, or strong selection pressures from recently introduced fungicides or pyrethrum varieties. These results may have serious implications for durability of management strategies for this disease. PMID:25226524

  8. Rapid Evolution of Parasite Resistance in a Warmer Environment: Insights from a Large Scale Field Experiment

    PubMed Central

    Mateos-Gonzalez, Fernando; Sundström, L. Fredrik; Schmid, Marian; Björklund, Mats

    2015-01-01

    Global climate change is expected to have major effects on host-parasite dynamics, with potentially enormous consequences for entire ecosystems. To develop an accurate prognostic framework, theoretical models must be supported by empirical research. We investigated potential changes in host-parasite dynamics between a fish parasite, the eyefluke Diplostomum baeri, and an intermediate host, the European perch Perca fluviatilis, in a large-scale semi-enclosed area in the Baltic Sea, the Biotest Lake, which since 1980 receives heated water from a nuclear power plant. Two sample screenings, in two consecutive years, showed that fish from the warmer Biotest Lake were now less parasitized than fish from the Baltic Sea. These results are contrasting previous screenings performed six years after the temperature change, which showed the inverse situation. An experimental infection, by which perch from both populations were exposed to D. baeri from the Baltic Sea, revealed that perch from the Baltic Sea were successfully infected, while Biotest fish were not. These findings suggest that the elevated temperature may have resulted, among other outcomes, in an extremely rapid evolutionary change through which fish from the experimental Biotest Lake have gained resistance to the parasite. Our results confirm the need to account for both rapid evolutionary adaptation and biotic interactions in predictive models, and highlight the importance of empirical research in order to validate future projections. PMID:26035300

  9. Temperature and the Field Stability of a Dengue Rapid Diagnostic Test in the Tropics

    PubMed Central

    Phommasone, Koukeo; Sengvilaipaseuth, Onanong; de Lamballerie, Xavier; Vongsouvath, Manivanh; Phonemixay, Ooyanong; Blacksell, Stuart D.; Newton, Paul N.; Dubot-Pérès, Audrey

    2015-01-01

    The global incidence of dengue has increased significantly in recent decades, resulting in a large public health burden in tropical and subtropical countries. Dengue rapid diagnostic tests (RDTs) can provide accurate, rapid accessible diagnosis for patient management and may be easily used by health workers in rural areas. However, in dengue-endemic areas, ambient temperatures are often higher than manufacturer's recommendation. We therefore evaluated the effect of high temperature over time on the performance of one commonly used dengue RDT, the Standard Diagnostics Bioline Dengue Duo. RDTs were kept in five different conditions (at 4°C, 35°C, 45°C, 60°C, and at fluctuant ambient temperatures in a free-standing hut) for between 2 days and 2 years in the Lao People's Democratic Republic (PDR). RDTs were tested with four control sera (negative, dengue nonstructural protein 1 [NS1], anti-dengue immunoglobulin [Ig] M, and anti-dengue IgG positive). The RDTs had 100% consistency over the 2-year study, despite high temperatures, including in the hut in which temperatures exceeded the manufacturer's recommendations for 29% of time points. These data suggest that the diagnostic accuracy of the SD Bioline Dengue Duo RDT remains stable even after long-term storage at high temperatures. Therefore, use at such ambient temperatures in tropical areas should not jeopardize the dengue diagnostic outcome. PMID:25962773

  10. Development and field testing of a rapid and ultra-stable atmospheric carbon dioxide spectrometer

    NASA Astrophysics Data System (ADS)

    Xiang, B.; Nelson, D. D.; McManus, J. B.; Zahniser, M. S.; Wehr, R. A.; Wofsy, S. C.

    2014-12-01

    We present field test results for a new spectroscopic instrument to measure atmospheric carbon dioxide (CO2) with high precision (0.02 μmol mol-1, or ppm at 1 Hz) and demonstrate high stability (within 0.1 ppm over more than 8 months), without the need for hourly, daily, or even monthly calibration against high-pressure gas cylinders. The technical novelty of this instrument (ABsolute Carbon dioxide, ABC) is the spectral null method using an internal quartz reference cell with known CO2 column density. Compared to a previously described prototype, the field instrument has better stability and benefits from more precise thermal control of the optics and more accurate pressure measurements in the sample cell (at the mTorr level). The instrument has been deployed at a long-term ecological research site (the Harvard Forest, USA), where it has measured for 8 months without on-site calibration and with minimal maintenance, showing drift bounds of less than 0.1 ppm. Field measurements agree well with those of a commercially available cavity ring-down CO2 instrument (Picarro G2301) run with a standard calibration protocol. This field test demonstrates that ABC is capable of performing high-accuracy, unattended, continuous field measurements with minimal use of reference gas cylinders.

  11. Development and field testing of a rapid and ultra-stable atmospheric carbon dioxide spectrometer

    DOE PAGESBeta

    Xiang, B.; Nelson, D. D.; McManus, J. B.; Zahniser, M. S.; Wehr, R. A.; Wofsy, S. C.

    2014-12-15

    We present field test results for a new spectroscopic instrument to measure atmospheric carbon dioxide (CO2) with high precision (0.02 μmol mol-1, or ppm at 1 Hz) and demonstrate high stability (within 0.1 ppm over more than 8 months), without the need for hourly, daily, or even monthly calibration against high-pressure gas cylinders. The technical novelty of this instrument (ABsolute Carbon dioxide, ABC) is the spectral null method using an internal quartz reference cell with known CO2 column density. Compared to a previously described prototype, the field instrument has better stability and benefits from more precise thermal control of themore » optics and more accurate pressure measurements in the sample cell (at the mTorr level). The instrument has been deployed at a long-term ecological research site (the Harvard Forest, USA), where it has measured for 8 months without on-site calibration and with minimal maintenance, showing drift bounds of less than 0.1 ppm. Field measurements agree well with those of a commercially available cavity ring-down CO2 instrument (Picarro G2301) run with a standard calibration protocol. This field test demonstrates that ABC is capable of performing high-accuracy, unattended, continuous field measurements with minimal use of reference gas cylinders.« less

  12. Development and field testing of a rapid and ultra-stable atmospheric carbon dioxide spectrometer

    DOE PAGESBeta

    Xiang, B.; Nelson, D. D.; McManus, J. B.; Zahniser, M. S.; Wehr, R.; Wofsy, S. C.

    2014-08-05

    We present field test results for a new spectroscopic instrument to measure atmospheric carbon dioxide (CO2) with high precision (0.02 ppm at 1 Hz) and demonstrate high stability (within 0.1 ppm over more than 8 months), without the need for hourly, daily, or even monthly calibration against high-pressure gas cylinders. The technical novelty of this instrument (ABsolute Carbon dioxide, ABC) is the spectral null method using an internal quartz reference cell with known CO2 column density. Compared to a previously described prototype, the field instrument has better stability and benefits from more precise thermal control of the optics and moremore » accurate pressure measurements in the sample cell (at the mTorr level). The instrument has been deployed at a long-term ecological research site (the Harvard Forest, USA), where it has measured for eight months without on-site calibration and with minimal maintenance, showing drift bounds of less than 0.1 ppm. Field measurements agree well with those of another commercially available cavity ring-down CO2 instrument (Picarro G2301) run with a standard calibration protocol. This field test demonstrates that ABC is capable of performing high-accuracy, unattended, continuous field measurements with minimal use of calibration cylinders.« less

  13. Development and field testing of a rapid and ultra-stable atmospheric carbon dioxide spectrometer

    NASA Astrophysics Data System (ADS)

    Xiang, B.; Nelson, D. D.; McManus, J. B.; Zahniser, M. S.; Wehr, R.; Wofsy, S. C.

    2014-08-01

    We present field test results for a new spectroscopic instrument to measure atmospheric carbon dioxide (CO2) with high precision (0.02 ppm at 1 Hz) and demonstrate high stability (within 0.1 ppm over more than 8 months), without the need for hourly, daily, or even monthly calibration against high-pressure gas cylinders. The technical novelty of this instrument (ABsolute Carbon dioxide, ABC) is the spectral null method using an internal quartz reference cell with known CO2 column density. Compared to a previously described prototype, the field instrument has better stability and benefits from more precise thermal control of the optics and more accurate pressure measurements in the sample cell (at the mTorr level). The instrument has been deployed at a long-term ecological research site (the Harvard Forest, USA), where it has measured for eight months without on-site calibration and with minimal maintenance, showing drift bounds of less than 0.1 ppm. Field measurements agree well with those of another commercially available cavity ring-down CO2 instrument (Picarro G2301) run with a standard calibration protocol. This field test demonstrates that ABC is capable of performing high-accuracy, unattended, continuous field measurements with minimal use of calibration cylinders.

  14. Improving our knowledge of rapid geomagnetic field intensity changes observed in Europe between 200 and 1400 AD

    NASA Astrophysics Data System (ADS)

    Gómez-Paccard, Miriam; Chauvin, Annick; Lanos, Philippe; Dufresne, Philippe; Kovacheva, Mary; Hill, Mimi J.; Beamud, Elisabet; Blain, Sophie; Bouvier, Armel; Guibert, Pierre; Archaeological Working Team

    2012-11-01

    Available archaeomagnetic data indicate that during the past 2500 yr there have been periods of rapid geomagnetic field intensity fluctuations interspersed with periods of almost constant field strength. Despite Europe being the most widely covered region in terms of archaeomagnetic data the occurrence and the behaviour of these rapid geomagnetic field intensity changes is under discussion and the challenge now is to precisely describe them. The aim of this study is to obtain an improved description of the sharp intensity change that took place in western Europe around 800 AD as well as to investigate if this peak is observed at the continental scale. For this purpose 13 precisely dated early medieval Spanish pottery fragments, four archaeological French kilns and three collections of bricks used for the construction of different French historical buildings with ages ranging between 335 and 1260 AD have been studied. Classical Thellier experiments performed on 164 specimens, and including anisotropy of thermoremanent magnetisation and cooling rate corrections, gave 119 reliable results. The 10 new high-quality mean archaeointensities obtained confirm the existence of an intensity maximum of ˜85 μT (at the latitude of Paris) centred at ˜800 AD and suggest that a previous abrupt intensity change occurred around 600 AD. Together with previously published data from western Europe that we deem to be the most reliable, the new data also suggest the existence of two other abrupt geomagnetic field intensity variations during the 12th century and around the second half of the 13th century AD. High-quality archaeointensities available from eastern Europe indicate that very similar geomagnetic field intensity changes occurred in this region. European data indicate that very rapid intensity changes (of at least 20 μT/century) took place in the recent history of the Earth's magnetic field. The results call for additional high-quality archaeointensities obtained from

  15. Utilisation of young and old soil carbon sources by microbial groups differ during the growing season and between experimental treatments in a long-term field experiment

    NASA Astrophysics Data System (ADS)

    Börjesson, Gunnar; Menichetti, Lorenzo; Thornton, Barry; Campbell, Colin; Kätterer, Thomas

    2014-05-01

    Soil organic matter (SOM)is the largest active carbon pool in the terrestrial environment. SOM is a key factor for soil fertility, but is also important for the sequestration of atmospheric CO2. In agricultural soils, management of plant residues and the use of organic fertilisers play important roles for maintaining SOM. Switching from C3 plants to C4 plants such as maize, enables a natural labelling in situ; when coupled with compound specific 13C isotope analysis of phospholipid fatty acids (PLFAs) it allows the proportion of new C (fixed after the switch added to soil from above- and belowground litter and root exudates) and the proportion of old C (fixed prior to the switch derived from turnover of organic matter) utilised by the soil microbial community to be determined. (new paragraph) A field experiment in Sweden, amended with different mineral and organic fertilisers since 1956, was grown with C3 plants, mainly cereals until 1999. From the year 2000 silage maize was grown every year. In 2012, soil from four replicate plots of five experimental treatments, N fertilised, N fertilised amended with straw and sewage sludge, and two controls (bare fallow and cropped unfertilised) were sampled three times, at the start, middle and end of the growing season. Phospholipid fatty acids (PLFAs) were extracted from all soil samples and analysed for concentrations and 13C content. (new paragraph) Total PLFA concentrations and also the PLFA/SOM ratios increased with SOM in the different treatments. Seasonal variation in total PLFA was small except for the most SOM-rich treatment (sewage sludge) where concentrations significantly decreased during the growing season indicating the depletion of a labile SOM pool. Weighted mean values of δ13C in PLFAs show that the plots fertilised with only calcium nitrate had the highest δ13C-values in PLFAs before (-20.24 o) and after the vegetation period (-20.37 o), due to a large input of 13C-enriched plant material. However, during

  16. Rapid immunocytochemistry based on alternating current electric field using squash smear preparation of central nervous system tumors.

    PubMed

    Moriya, Jun; Tanino, Mishie Ann; Takenami, Tomoko; Endoh, Tomoko; Urushido, Masana; Kato, Yasutaka; Wang, Lei; Kimura, Taichi; Tsuda, Masumi; Nishihara, Hiroshi; Tanaka, Shinya

    2016-01-01

    The role of intraoperative pathological diagnosis for central nervous system (CNS) tumors is crucial for neurosurgery when determining the surgical procedure. Especially, treatment of carmustine (BCNU) wafers requires a conclusive diagnosis of high-grade glioma proven by intraoperative diagnosis. Recently, we demonstrated the usefulness of rapid immunohistochemistry (R-IHC) that facilitates antigen-antibody reaction under alternative current (AC) electric field in the intraoperative diagnosis of CNS tumors; however, a higher proportion of water and lipid in the brain parenchyma sometimes leads to freezing artifacts, resulting in poor quality of frozen sections. On the other hand, squash smear preparation of CNS tumors for cytology does not affect the frozen artifacts, and the importance of smear preparation is now being re-recognized as being better than that of the tissue sections. In this study, we established the rapid immunocytochemistry (R-ICC) protocol for squash smears of CNS tumors using AC electric field that takes only 22 min, and demonstrated its usefulness for semi-quantitative Ki-67/MIB-1 labeling index and CD 20 by R-ICC for intraoperative diagnosis. R-ICC by AC electric field may become a substantial tool for compensating R-IHC and will be applied for broad antibodies in the future. PMID:26546480

  17. A cluster of central line-associated bloodstream infections due to rapidly growing nontuberculous mycobacteria in patients with hematologic disorders at a Japanese tertiary care center: an outbreak investigation and review of the literature.

    PubMed

    Tagashira, Yasuaki; Kozai, Yasuji; Yamasa, Hitomi; Sakurada, Masako; Kashiyama, Tetsuya; Honda, Hitoshi

    2015-01-01

    BACKGROUND Rapidly growing nontuberculous mycobacteria (RGM) are considered rare pathogens, causing central line-associated bloodstream infection. We identified an outbreak of central line-associated bloodstream infection due to RGM at a hematology-oncology ward during a 5-month period. DESIGN Outbreak investigation and literature review. SETTING A Japanese tertiary care center. PATIENTS Adults who were hospitalized at the hematology-oncology ward from October 15, 2011, through February 17, 2012. RESULTS A total of 5 patients with a bloodstream infection due to RGM (4 cases of Mycobacterium mucogenicum and 1 case of Mycobacterium canariasense infection) were identified; of these, 3 patients had acute myeloid leukemia, 1 had acute lymphocytic leukemia, and 1 had aplastic anemia. Four of the 5 patients received cord blood transplantation prior to developing the bloodstream infection. All central venous catheters in patients with a bloodstream infection were removed. These patients promptly defervesced after catheter removal and their care was successfully managed without antimicrobial therapy. Surveillance cultures from the environment and water detected M. mucogenicum and M. canariasense in the water supply of the hematology-oncology ward. The isolates from the bloodstream infection and water sources were identical on the basis of 16S-rRNA gene sequencing. CONCLUSIONS The source of RGM in the outbreak of bloodstream infections likely was the ward tap water supply. Awareness of catheter-related bloodstream infections due to nontuberculous mycobacteria should be emphasized, especially where immunocompromised patients are at risk. Also, using antimicrobials after catheter removal to treat central line-associated bloodstream infection due to RGM may not be necessary. Infect Control Hosp Epidemiol 2015;36(1): 76-80. PMID:25627764

  18. CLUSTERING OF OBSCURED AND UNOBSCURED QUASARS IN THE BOOeTES FIELD: PLACING RAPIDLY GROWING BLACK HOLES IN THE COSMIC WEB

    SciTech Connect

    Hickox, Ryan C.; Alexander, David M.; Goulding, Andrew D.; Myers, Adam D.; Brodwin, Mark; Forman, William R.; Jones, Christine; Murray, Stephen S.; Eisenstein, Daniel; Caldwell, Nelson; Brown, Michael J. I.; Cool, Richard J.; Kochanek, Christopher S.; Dey, Arjun; Jannuzi, Buell T.; Assef, Roberto J.; Eisenhardt, Peter R.; Gorjian, Varoujan; Stern, Daniel; Le Floc'h, Emeric

    2011-04-20

    We present the first measurement of the spatial clustering of mid-infrared-selected obscured and unobscured quasars, using a sample in the redshift range 0.7 < z < 1.8 selected from the 9 deg{sup 2} Booetes multiwavelength survey. Recently, the Spitzer Space Telescope and X-ray observations have revealed large populations of obscured quasars that have been inferred from models of the X-ray background and supermassive black hole evolution. To date, little is known about obscured quasar clustering, which allows us to measure the masses of their host dark matter halos and explore their role in the cosmic evolution of black holes and galaxies. In this study, we use a sample of 806 mid-infrared-selected quasars and {approx}250,000 galaxies to calculate the projected quasar-galaxy cross-correlation function w{sub p} (R). The observed clustering yields characteristic dark matter halo masses of log(M{sub halo} [h {sup -1} M{sub sun}]) = 12.7{sup +0.4}{sub -0.6} and 13.3{sup +0.3}{sub -0.4} for unobscured quasars (QSO-1s) and obscured quasars (Obs-QSOs), respectively. The results for QSO-1s are in excellent agreement with previous measurements for optically selected quasars, while we conclude that the Obs-QSOs are at least as strongly clustered as the QSO-1s. We test for the effects of photometric redshift errors on the optically faint Obs-QSOs, and find that our method yields a robust lower limit on the clustering; photo-z errors may cause us to underestimate the clustering amplitude of the Obs-QSOs by at most {approx}20%. We compare our results to previous studies, and speculate on physical implications of stronger clustering for obscured quasars.

  19. Growing Your Own: Minority Teachers

    ERIC Educational Resources Information Center

    Singh, Delar K.; Stoloff, David L.

    2007-01-01

    In the USA, the number of school age children who represent minority backgrounds is rapidly growing. However, despite several efforts, the teaching force remains primarily White. The purpose of this paper is to describe a residential future teachers program in Connecticut which recruits minority rising juniors and seniors from high schools across…

  20. How Does Your Garlic Grow?

    ERIC Educational Resources Information Center

    Shimabukuro, Mary A.; Fearing, Vickie

    1993-01-01

    Garlic is an ideal plant for the elementary classroom. It grows rapidly in water without aeration for several weeks and remains relatively free of microbial contamination. Simple experiments with garlic purchased at grocery stores can illustrate various aspects of plant growth. (PR)

  1. Missile and aircraft field test data acquired with the rapid optical beam steering (ROBS) sensor system

    NASA Astrophysics Data System (ADS)

    MacDonald, Bruce; Dunn, Murray; Herr, David W.; Hyman, Howard; Leslie, Daniel H.; Lovern, Michael G.

    1997-08-01

    The ROBS instrument has recently acquired unique imagery of a missile intercepting an airborne drone target. We present a summary of that mission. We also present imagery of three airborne targets collected while the ROBS instrument simultaneously tracked all three aircraft. The recent test data highlights the capability of the ROBS instrument for autonomous acquisition, tracking, and imaging of multiple targets under field test conditions. We also describe improvements to the optical system currently underway.

  2. RAPID COMMUNICATION: High performance superconducting wire in high applied magnetic fields via nanoscale defect engineering

    NASA Astrophysics Data System (ADS)

    Wee, Sung Hun; Goyal, Amit; Zuev, Yuri L.; Cantoni, Claudia

    2008-09-01

    High temperature superconducting (HTS) wires capable of carrying large critical currents with low dissipation levels in high applied magnetic fields are needed for a wide range of applications. In particular, for electric power applications involving rotating machinery, such as large-scale motors and generators, a high critical current, Ic, and a high engineering critical current density, JE, in applied magnetic fields in the range of 3-5 Tesla (T) at 65 K are required. In addition, exceeding the minimum performance requirements needed for these applications results in a lower fabrication cost, which is regarded as crucial to realize or enable many large-scale bulk applications of HTS materials. Here we report the fabrication of short segments of a potential superconducting wire comprised of a 4 µm thick YBa2Cu3O7-δ (YBCO) layer on a biaxially textured substrate with a 50% higher Ic and JE than the highest values reported previously. The YBCO film contained columns of self-assembled nanodots of BaZrO3 (BZO) roughly oriented along the c-axis of YBCO. Although the YBCO film was grown at a high deposition rate, three-dimensional self-assembly of the insulating BZO nanodots still occurred. For all magnetic field orientations, minimum Ic and JE at 65 K, 3 T for the wire were 353 A cm-1 and 65.4 kA cm-2, respectively.

  3. Rapid method for monitoring chitosan coagulation using low-field NMR relaxometry.

    PubMed

    Kock, Flávio Vinicius Crizóstomo; Colnago, Luiz Alberto

    2016-10-01

    Time-domain NMR relaxometry was proposed as a simple, rapid method to monitor chitosan (CS) coagulation as a function of pH. The longitudinal (T1) and transverse (T2) relaxation times of three CS concentrations (0.022, 0.22, and 2.2gL(-1)) were simultaneously measured by CP-CWFPx-x pulse sequences in a 0.47T spectrometer. T1 and T2 were shown to be independent of pH as well as to assume values similar to the relaxation time of water (2.7s) at the lowest tested CS concentration. At the highest concentration, T1 increased whereas T2 decreased as pH varied from 6.0 to 7.0. This indicates a remarkable effect of CS on water relaxation at pH values higher than the pKa of CS amino groups (6.5). Therefore, CS reduced the water mobility at the highest CS concentration and greatest pH values, suggesting a CS supramolecular structure (gel) that entraps the solvent in confined regions. The method proposed here can be further used to study the coagulation of other polysaccharides. PMID:27312606

  4. Field drains as a route of rapid nutrient export from agricultural land receiving biosolids.

    PubMed

    Heathwaite, A L; Burke, S P; Bolton, L

    2006-07-15

    We report research on the environmental risk of incidental nutrient transfers from land to water for biosolids amended soils. We show that subsurface (drainflow) pathways of P transport may result in significant concentrations, up to 10 mg total P l(-1), in the drainage network of an arable catchment when a P source (recent biosolids application) coincides with a significant and active transport pathway (rainfall event). However, the high P concentrations were short-lived, with drainage ditch total P concentrations returning to pre-storm concentrations within a few days of the storm event. In the case of the drainflow concentrations reported here, the results are unusual in that they describe an 'incidental event' for a groundwater catchment where such events might normally be expected to be rare owing to the capacity of the hydrological system to attenuate nutrient fluxes for highly adsorbed elements such as P. Consequently, there is a potential risk of P transfers to shallow groundwater systems. We suggest that the findings are not specific to biosolids-alone, which is a highly regulated industry, but that similar results may be anticipated had livestock waste or mineral fertilizer been applied, although the magnitude of losses may differ. The risk appears to be more one of timing and the availability of a rapid transport pathway than of P source. PMID:16603229

  5. Comparative field analyses of rapid analyte measurement platform and reverse transcriptase polymerase chain reaction assays for West Nile virus surveillance.

    PubMed

    Williges, Eric; Farajollahi, Ary; Nelder, Mark P; Gaugler, Randy

    2009-12-01

    Rapid detection of West Nile virus (WNV) in mosquito pools is essential for predicting epizootics and epidemics. We compare the efficiency and sensitivity of the Rapid Analyte Measurement Platform (RAMP) to reverse transcriptase polymerase chain reaction (RT-PCR) from 2005 to 2008 from field mosquito populations in Mercer County, NJ. Overall, 316 pools tested negative and 115 pools tested positive for WNV. Eighty-nine pools tested positive using RAMP and all were confirmed by RT-PCR; 26 pools were WNV-negative using RAMP but positive using RT-PCR. False-positives from RAMP were not detected in our four-year study, indicating that RAMP is a reliable tool when used to augment existing RT-PCR-based WNV surveillance programs. Local mosquito control programs using RAMP will benefit from its ease of use, quick results, and lack of false positives but should understand the sensitivity of this test when compared to RT-PCR. Used with standard methods, RAMP will enhance existing mosquito control and WNV surveillance by providing rapid results and improved mosquito management decisions. PMID:20836836

  6. Rapid bacteriophage MS2 transport in an oxic sandy aquifer in cold climate: Field experiments and modeling

    NASA Astrophysics Data System (ADS)

    Kvitsand, Hanne M. L.; Ilyas, Aamir; Østerhus, Stein W.

    2015-12-01

    Virus removal during rapid transport in an unconfined, low-temperature (6°C) sand and gravel aquifer was investigated at a riverbank field site, 25 km south of Trondheim in central Norway. The data from bacteriophage MS2 inactivation and transport experiments were applied in a two-site kinetic transport model using HYDRUS-1D, to evaluate the mechanisms of virus removal and whether these mechanisms were sufficient to protect the groundwater supplies. The results demonstrated that inactivation was negligible to the overall removal and that irreversible MS2 attachment to aquifer grains, coated with iron precipitates, played a dominant role in the removal of MS2; 4.1 log units of MS2 were removed by attachment during 38 m travel distance and less than 2 days residence time. Although the total removal was high, pathways capable of allowing virus migration at rapid velocities were present in the aquifer. The risk of rapid transport of viable viruses should be recognized, particularly for water supplies without permanent disinfection.

  7. Growing and Growing: Promoting Functional Thinking with Geometric Growing Patterns

    ERIC Educational Resources Information Center

    Markworth, Kimberly A.

    2010-01-01

    Design research methodology is used in this study to develop an empirically-substantiated instruction theory about students' development of functional thinking in the context of geometric growing patterns. The two research questions are: (1) How does students' functional thinking develop in the context of geometric growing patterns? (2) What are…

  8. Rapid Task-Related Plasticity of Spectrotemporal Receptive Fields in the Auditory Midbrain.

    PubMed

    Slee, Sean J; David, Stephen V

    2015-09-23

    Previous research has demonstrated that auditory cortical neurons can modify their receptive fields when animals engage in auditory detection tasks. We tested for this form of task-related plasticity in the inferior colliculus (IC) of ferrets trained to detect a pure tone target in a sequence of noise distractors that did not overlap in time. During behavior, responses were suppressed at the target tone frequency in approximately half of IC neurons relative to the passive state. This suppression often resulted from a combination of a local tuning change and a global change in overall excitability. Local and global suppression were stronger when the target frequency was aligned to neuronal best frequency. Local suppression in the IC was indistinguishable from that described previously in auditory cortex, while global suppression was unique to the IC. The results demonstrate that engaging in an auditory task can change selectivity for task-relevant features in the midbrain, an area where these effects have not been reported previously. Significance statement: Previous studies have demonstrated that the receptive fields of cortical neurons are modified when animals engage in auditory behaviors, a process that is hypothesized to provide the basis for segregating sound sources in an auditory scene. This study demonstrates for the first time that receptive fields of neurons in the midbrain inferior colliculus are also modified during behavior. The magnitude of the tuning changes is similar to previous reports in cortex. These results support a hierarchical model of behaviorally driven sound segregation that begins in the subcortical auditory network. PMID:26400939

  9. Rapid Task-Related Plasticity of Spectrotemporal Receptive Fields in the Auditory Midbrain

    PubMed Central

    David, Stephen V.

    2015-01-01

    Previous research has demonstrated that auditory cortical neurons can modify their receptive fields when animals engage in auditory detection tasks. We tested for this form of task-related plasticity in the inferior colliculus (IC) of ferrets trained to detect a pure tone target in a sequence of noise distractors that did not overlap in time. During behavior, responses were suppressed at the target tone frequency in approximately half of IC neurons relative to the passive state. This suppression often resulted from a combination of a local tuning change and a global change in overall excitability. Local and global suppression were stronger when the target frequency was aligned to neuronal best frequency. Local suppression in the IC was indistinguishable from that described previously in auditory cortex, while global suppression was unique to the IC. The results demonstrate that engaging in an auditory task can change selectivity for task-relevant features in the midbrain, an area where these effects have not been reported previously. SIGNIFICANCE STATEMENT Previous studies have demonstrated that the receptive fields of cortical neurons are modified when animals engage in auditory behaviors, a process that is hypothesized to provide the basis for segregating sound sources in an auditory scene. This study demonstrates for the first time that receptive fields of neurons in the midbrain inferior colliculus are also modified during behavior. The magnitude of the tuning changes is similar to previous reports in cortex. These results support a hierarchical model of behaviorally driven sound segregation that begins in the subcortical auditory network. PMID:26400939

  10. Development of a Rapid, Standardized Data Inventory for R2K Field Programs

    NASA Astrophysics Data System (ADS)

    Arko, R. A.; Chayes, D. N.; Carbotte, S. M.; Ryan, W. B.; Lehnert, K. A.; Shank, T. M.

    2003-12-01

    Effective data management for Ridge2000 requires the production of a complete data inventory for every field program in a timely and standardized way. We are developing a set of forms to document 1.) basic field program information (dates and locations, platform, science party, etc); 2.) an inventory of sensor systems, data types (marine geophysical, physical and chemical oceanographic, rock and sediment samples, and biological), and file formats; 3.) supplemental attachments (written reports, instrument diagrams, etc); and 4.) a basic navigation track. We regard this as the minimal set of metadata which should be produced immediately at the end of a field program, in order to publicize it in an online database and satisfy agency requirements. We have developed a prototype set of Portable Document Format (PDF) forms which can be completed during a cruise through a combination of manual and automated input. PDF is a stable and widely-used format, with software available as both a commercial product (Adobe Acrobat) and an open-source library (http://www.pdflib.org). Completing a PDF form requires only the Acrobat Reader software, which is freely available for every major computing platform. Acrobat offers extensive functionality to aid in data inventory, including the ability to verify content on-the-fly, import data from other files and forms, show controlled vocabularies as pop-up menus, export to XML format, and print a high-quality readable report. Prototype forms have been tested on a recent transit of the CGC Healy, and we plan to continue testing on other ships and soliciting community feedback over the next several months. We envision a long-term plan in which a master set of forms is deployed with every R2K field program, along with a copy of Acrobat Reader, on lightweight storage media such as USB keys. The completed forms will then be transmitted to the data management center, where they are ingested automatically and the information made available in the

  11. Rapid field-based landslide hazard assessment in response to post-earthquake emergency

    NASA Astrophysics Data System (ADS)

    Frattini, Paolo; Gambini, Stefano; Cancelliere, Giorgio

    2016-04-01

    On April 25, 2015 a Mw 7.8 earthquake occurred 80 km to the northwest of Kathmandu (Nepal). The largest aftershock, occurred on May 12, 2015, was the Mw 7.3 Nepal earthquake (SE of Zham, China), 80 km to the east of Kathmandu. . The earthquakes killed ~9000 people and severely damaged a 10,000 sqkm region in Nepal and neighboring countries. Several thousands of landslides have been triggered during the event, causing widespread damages to mountain villages and the evacuation of thousands of people. Rasuwa was one of the most damaged districts. This contribution describes landslide hazard analysis of the Saramthali, Yarsa and Bhorle VDCs (122 km2, Rasuwa district). Hazard is expressed in terms of qualitative classes (low, medium, high), through a simple matrix approach that combines frequency classes and magnitude classes. The hazard analysis is based primarily on the experience gained during a field survey conducted in September 2014. During the survey, local knowledge has been systematically exploited through interviews with local people that have experienced the earthquake and the coseismic landslides. People helped us to recognize fractures and active deformations, and allowed to reconstruct a correct chronicle of landslide events, in order to assign the landslide events to the first shock, the second shock, or the post-earthquake 2015 monsoon. The field experience was complemented with a standard analysis of the relationship between potential controlling factors and the distribution of landslides reported in Kargel et al (2016). This analysis allowed recognizing the most important controlling factor. This information was integrated with the field observations to verify the mapped units and to complete the mapping in area not accessible for field activity. Finally, the work was completed with the analysis and the use of a detailed landslide inventory produced by the University of Milano Bicocca that covers most of the area affected by coseismic landslides in

  12. Field evaluation of a rapid diagnostic test to detect antibodies in human toxocariasis.

    PubMed

    Lim, P K C; Yamasaki, H; Mak, J W; Wong, S F; Chong, C W; Yap, I K S; Ambu, S; Kumarasamy, V

    2015-08-01

    Human toxocariasis which is caused mainly by the larvae of Toxocara canis and Toxocara cati, is a worldwide zoonotic disease that can be a potentially serious human infection. The enzyme-linked immunosorbent assay (ELISA) using T. canis excretory-secretory (TES) antigens harvested from T. canis larvae is currently the serological test for confirming toxocariasis. An alternative to producing large amounts of Toxocara TES and improved diagnosis for toxocariasis is through the development of highly specific recombinant antigens such as the T. canis second stage larva excretory-secretory 30 kDa protein (recTES-30). The aim of this study was to evaluate the sensitivity and specificity of a rapid diagnostic kit (RDT, named as iToxocara kit) in comparison to recTES-30 ELISA in Serendah Orang Asli village in Selangor, Malaysia. A total of 133 subjects were included in the study. The overall prevalence rates by ELISA and RDT were 29.3% and 33.1%, respectively, with more positive cases detected in males than females. However, no association was found between toxocariasis and gender or age. The percentage sensitivity, specificity, positive predictive value and negative predictive value of RDT were 85.7%, 90.1%, 80% and 93.2%, respectively. The prevalence for toxocariasis in this population using both ELISA and RDT was 27.1% (36/133) and the K-concordance test suggested good agreement of the two tests with a Cohen's kappa of 0.722, P<0.01. In addition, the followed-up Spearman rank correlation showed a moderately high correlation at R=0.704 and P<0.01. In conclusion, the RDT kit was faster and easier to use than an ELISA and is useful for the laboratory diagnosis of hospitalized cases of toxocariasis. PMID:25910623

  13. AC electric field for rapid assembly of nanostructured polyaniline onto microsized gap for sensor devices.

    PubMed

    La Ferrara, Vera; Rametta, Gabriella; De Maria, Antonella

    2015-07-01

    Interconnected network of nanostructured polyaniline (PANI) is giving strong potential for enhancing device performances than bulk PANI counterparts. For nanostructured device processing, the main challenge is to get prototypes on large area by requiring precision, low cost and high rate assembly. Among processes meeting these requests, the alternate current electric fields are often used for nanostructure assembling. For the first time, we show the assembly of nanostructured PANI onto large electrode gaps (30-60 μm width) by applying alternate current electric fields, at low frequencies, to PANI particles dispersed in acetonitrile (ACN). An important advantage is the short assembly time, limited to 5-10 s, although electrode gaps are microsized. That encouraging result is due to a combination of forces, such as dielectrophoresis (DEP), induced-charge electrokinetic (ICEK) flow and alternate current electroosmotic (ACEO) flow, which speed up the assembly process when low frequencies and large electrode gaps are used. The main achievement of the present study is the development of ammonia sensors created by direct assembling of nanostructured PANI onto electrodes. Sensors exhibit high sensitivity to low gas concentrations as well as excellent reversibility at room temperature, even after storage in air. PMID:26009866

  14. Nonlinear growing neutrino cosmology

    NASA Astrophysics Data System (ADS)

    Ayaita, Youness; Baldi, Marco; Führer, Florian; Puchwein, Ewald; Wetterich, Christof

    2016-03-01

    The energy scale of dark energy, ˜2 ×10-3 eV , is a long way off compared to all known fundamental scales—except for the neutrino masses. If dark energy is dynamical and couples to neutrinos, this is no longer a coincidence. The time at which dark energy starts to behave as an effective cosmological constant can be linked to the time at which the cosmic neutrinos become nonrelativistic. This naturally places the onset of the Universe's accelerated expansion in recent cosmic history, addressing the why-now problem of dark energy. We show that these mechanisms indeed work in the growing neutrino quintessence model—even if the fully nonlinear structure formation and backreaction are taken into account, which were previously suspected of spoiling the cosmological evolution. The attractive force between neutrinos arising from their coupling to dark energy grows as large as 106 times the gravitational strength. This induces very rapid dynamics of neutrino fluctuations which are nonlinear at redshift z ≈2 . Nevertheless, a nonlinear stabilization phenomenon ensures only mildly nonlinear oscillating neutrino overdensities with a large-scale gravitational potential substantially smaller than that of cold dark matter perturbations. Depending on model parameters, the signals of large-scale neutrino lumps may render the cosmic neutrino background observable.

  15. A Survey of the Rapidly Emerging Field of Nanotechnology: Potential Applications for Scientific Instruments and Technologies for Atmospheric Entry Probes

    NASA Technical Reports Server (NTRS)

    Meyyappan, M.; Arnold, J. O.

    2005-01-01

    The field of Nanotechnology is well funded worldwide and innovations applicable to Solar System Exploration are emerging much more rapidly than thought possible just a few years ago. This presentation will survey recent innovations from nanotechnololgy with a focus on novel applications to atmospheric entry science and probe technology, in a fashion similar to that presented by Arnold and Venkatapathy at the previous workshop forum at Lisbon Portugal, October 6-9, 2003. Nanotechnology is a rapidly emerging field that builds systems, devices and materials from the bottom up, atom by atom, and in so doing provides them with novel and remarkable macro-scale performance. This technology has the potential to revolutionize space exploration by reducing mass and simultaneously increasing capability. Thermal, Radiation, Impact Protective Shields: Atmospheric probes and humans on long duration deep space missions involved in Solar System Exploration must safely endure 3 significant hazards: (i) atmospheric entry; (ii) radiation; and (iii) micrometeorite or debris impact. Nanostructured materials could be developed to address all three hazards with a single protective shield, which would involve much less mass than a traditional approach. The concept can be ready in time for incorporation into NASA s Crew Exploration Vehicle, and possible entry probes to fly on the Jupiter Icy Moons

  16. Development of a lateral flow immunoassay for rapid field detection of the red imported fire ant, Solenopsis invicta (Hymenoptera: Formicidae).

    PubMed

    Valles, Steven M; Strong, Charles A; Callcott, Anne-Marie A

    2016-07-01

    The red imported fire ant, Solenopsis invicta, is an aggressive, highly invasive pest ant species from South America that has been introduced into North America, Asia, and Australia. Quarantine efforts have been imposed in the USA to minimize further spread of the ant. To aid the quarantine efforts, there remains an acute need for a rapid, field portable method for the identification of these ants. In this report, we describe two novel monoclonal antibodies that specifically bind the S. invicta venom protein 2 produced by S. invicta. Using these monoclonal antibodies we developed a lateral flow immunoassay that provides a rapid and portable method for the identification of S. invicta ants. The lateral flow immunoassay was validated against purified S. invicta venom protein 2 and 33 unique ant species (representing 15 % of the total species and 42 % of the Myrmicinae genera found in Florida), and only S. invicta and the S. invicta/richteri hybrid produced a positive result. These monoclonal antibodies were selective to S. invicta venom protein 2 and did not bind to proteins from congeners (i.e., S. geminata or S. richteri) known to produce a S. invicta venom protein 2 ortholog. This S. invicta lateral flow immunoassay provides a new tool for regulatory agencies in the USA to enforce quarantine protocols and limit the spread of this invasive ant. Graphical Abstract Field method to detect and identify the red imported fire ant, Solenopsis invicta. PMID:27108280

  17. A replicated climate change field experiment reveals rapid evolutionary response in an ecologically important soil invertebrate.

    PubMed

    Bataillon, Thomas; Galtier, Nicolas; Bernard, Aurelien; Cryer, Nicolai; Faivre, Nicolas; Santoni, Sylvain; Severac, Dany; Mikkelsen, Teis N; Larsen, Klaus S; Beier, Claus; Sørensen, Jesper G; Holmstrup, Martin; Ehlers, Bodil K

    2016-07-01

    Whether species can respond evolutionarily to current climate change is crucial for the persistence of many species. Yet, very few studies have examined genetic responses to climate change in manipulated experiments carried out in natural field conditions. We examined the evolutionary response to climate change in a common annelid worm using a controlled replicated experiment where climatic conditions were manipulated in a natural setting. Analyzing the transcribed genome of 15 local populations, we found that about 12% of the genetic polymorphisms exhibit differences in allele frequencies associated to changes in soil temperature and soil moisture. This shows an evolutionary response to realistic climate change happening over short-time scale, and calls for incorporating evolution into models predicting future response of species to climate change. It also shows that designed climate change experiments coupled with genome sequencing offer great potential to test for the occurrence (or lack) of an evolutionary response. PMID:27109012

  18. Disaster behavioral health: legal and ethical considerations in a rapidly changing field.

    PubMed

    Flynn, Brian W; Speier, Anthony H

    2014-08-01

    Disaster behavioral health is increasingly regarded as a central part of disaster preparedness, response and recovery. Legal and ethical issues have received relatively little attention and have sparked divergent opinions. Optimally, understanding and applying legal and ethical considerations requires an understanding of the evolution of the disaster behavioral health field and the context of disaster response and recovery. In addition, there are many legal and ethical questions identified for consideration, and many ways to approach reaching understanding and consensus. Traditionally, discussions of disaster behavioral health, including legal and ethical issues, have not included understanding decision making processes that occur in extreme circumstances. Models which interpret disaster response operations as complex adaptive systems are presented for consideration as useful tools for preparing mental health workers for effectively delivering services in acute disaster response environments. PMID:24912607

  19. Continued Rapid Uplift at Laguna del Maule Volcanic Field (Chile) from 2007 through 2014

    NASA Astrophysics Data System (ADS)

    Le Mével, H.; Feigl, K. L.; Cordova, L.; DeMets, C.; Lundgren, P.

    2014-12-01

    The current rate of uplift at Laguna del Maule (LdM) volcanic field in Chile is among the highest ever observed geodetically for a volcano that is not actively erupting. Using data from interferometric synthetic aperture radar (InSAR) and the Global Positioning System (GPS) recorded at five continuously operating stations, we measure the deformation field with dense sampling in time (1/day) and space (1/hectare). These data track the temporal evolution of the current unrest episode from its inception (sometime between 2004 and 2007) to vertical velocities faster than 200 mm/yr that continue through (at least) July 2014. Building on our previous work, we evaluate the temporal evolution by analyzing data from InSAR (ALOS, TerraSAR-X, TanDEM-X) and GPS [http://dx.doi.org/ 10.1093/gji/ggt438]. In addition, we consider InSAR data from (ERS, ENVISAT, COSMO-Skymed, and UAVSAR), as well as constraints from magneto-telluric (MT), seismic, and gravity surveys. The goal is to test the hypothesis that a recent magma intrusion is feeding a large, existing magma reservoir. What will happen next? To address this question, we analyze the temporal evolution of deformation at other large silicic systems such as Yellowstone, Long Valley, and Three Sisters, during well-studied episodes of unrest. We consider several parameterizations, including piecewise linear, parabolic, and Gaussian functions of time. By choosing the best-fitting model, we expect to constrain the time scales of such episodes and elucidate the processes driving them.

  20. Rapid Transient Pressure Field Computations in the Nearfield of Circular Transducers using Frequency Domain Time-Space Decomposition

    PubMed Central

    Alles, E. J.; Zhu, Y.; van Dongen, K. W. A.; McGough, R. J.

    2013-01-01

    The fast nearfield method, when combined with time-space decomposition, is a rapid and accurate approach for calculating transient nearfield pressures generated by ultrasound transducers. However, the standard time-space decomposition approach is only applicable to certain analytical representations of the temporal transducer surface velocity that, when applied to the fast nearfield method, are expressed as a finite sum of products of separate temporal and spatial terms. To extend time-space decomposition such that accelerated transient field simulations are enabled in the nearfield for an arbitrary transducer surface velocity, a new transient simulation method, frequency domain time-space decomposition (FDTSD), is derived. With this method, the temporal transducer surface velocity is transformed into the frequency domain, and then each complex-valued term is processed separately. Further improvements are achieved by spectral clipping, which reduces the number of terms and the computation time. Trade-offs between speed and accuracy are established for FDTSD calculations, and pressure fields obtained with the FDTSD method for a circular transducer are compared to those obtained with Field II and the impulse response method. The FDTSD approach, when combined with the fast nearfield method and spectral clipping, consistently achieves smaller errors in less time and requires less memory than Field II or the impulse response method. PMID:23160476

  1. Development of a Rapid Soil Water Content Detection Technique Using Active Infrared Thermal Methods for In-Field Applications

    PubMed Central

    Antonucci, Francesca; Pallottino, Federico; Costa, Corrado; Rimatori, Valentina; Giorgi, Stefano; Papetti, Patrizia; Menesatti, Paolo

    2011-01-01

    The aim of this study was to investigate the suitability of active infrared thermography and thermometry in combination with multivariate statistical partial least squares analysis as rapid soil water content detection techniques both in the laboratory and the field. Such techniques allow fast soil water content measurements helpful in both agricultural and environmental fields. These techniques, based on the theory of heat dissipation, were tested by directly measuring temperature dynamic variation of samples after heating. For the assessment of temperature dynamic variations data were collected during three intervals (3, 6 and 10 s). To account for the presence of specific heats differences between water and soil, the analyses were regulated using slopes to linearly describe their trends. For all analyses, the best model was achieved for a 10 s slope. Three different approaches were considered, two in the laboratory and one in the field. The first laboratory-based one was centred on active infrared thermography, considered measurement of temperature variation as independent variable and reported r = 0.74. The second laboratory–based one was focused on active infrared thermometry, added irradiation as independent variable and reported r = 0.76. The in-field experiment was performed by active infrared thermometry, heating bare soil by solar irradiance after exposure due to primary tillage. Some meteorological parameters were inserted as independent variables in the prediction model, which presented r = 0.61. In order to obtain more general and wide estimations in-field a Partial Least Squares Discriminant Analysis on three classes of percentage of soil water content was performed obtaining a high correct classification in the test (88.89%). The prediction error values were lower in the field with respect to laboratory analyses. Both techniques could be used in conjunction with a Geographic Information System for obtaining detailed information on soil

  2. Development of a rapid soil water content detection technique using active infrared thermal methods for in-field applications.

    PubMed

    Antonucci, Francesca; Pallottino, Federico; Costa, Corrado; Rimatori, Valentina; Giorgi, Stefano; Papetti, Patrizia; Menesatti, Paolo

    2011-01-01

    The aim of this study was to investigate the suitability of active infrared thermography and thermometry in combination with multivariate statistical partial least squares analysis as rapid soil water content detection techniques both in the laboratory and the field. Such techniques allow fast soil water content measurements helpful in both agricultural and environmental fields. These techniques, based on the theory of heat dissipation, were tested by directly measuring temperature dynamic variation of samples after heating. For the assessment of temperature dynamic variations data were collected during three intervals (3, 6 and 10 s). To account for the presence of specific heats differences between water and soil, the analyses were regulated using slopes to linearly describe their trends. For all analyses, the best model was achieved for a 10 s slope. Three different approaches were considered, two in the laboratory and one in the field. The first laboratory-based one was centred on active infrared thermography, considered measurement of temperature variation as independent variable and reported r = 0.74. The second laboratory-based one was focused on active infrared thermometry, added irradiation as independent variable and reported r = 0.76. The in-field experiment was performed by active infrared thermometry, heating bare soil by solar irradiance after exposure due to primary tillage. Some meteorological parameters were inserted as independent variables in the prediction model, which presented r = 0.61. In order to obtain more general and wide estimations in-field a Partial Least Squares Discriminant Analysis on three classes of percentage of soil water content was performed obtaining a high correct classification in the test (88.89%). The prediction error values were lower in the field with respect to laboratory analyses. Both techniques could be used in conjunction with a Geographic Information System for obtaining detailed information on soil heterogeneity

  3. The Taylor Creek Rhyolite of New Mexico: a rapidly emplaced field of lava domes and flows

    USGS Publications Warehouse

    Duffield, W.A.; Dalrymple, G.B.

    1990-01-01

    The Tertiary Taylor Creek Rhyolite of southwest New Mexico comprises at least 20 lava domes and flows. Each of the lavas was erupted from its own vent, and the vents are distributed throughout a 20 km by 50 km area. The volume of the rhyolite and genetically associated pyroclastic deposits is at least 100 km3 (denserock equivalent). The rhyolite contains 15%-35% quartz, sanidine, plagioclase, ??biotite, ??hornblende phenocrysts. Quartz and sanidine account for about 98% of the phenocrysts and are present in roughly equal amounts. With rare exceptions, the groundmass consists of intergrowths of fine-grained silica and alkali feldspar. Whole-rock major-element composition varies little, and the rhyolite is metaluminous to weakly peraluminous; mean SiO2 content is about 77.5??0.3%. Similarly, major-element compositions of the two feldsparphenocryst species also are nearly constant. However, whole-rock concentrations of some trace-elements vary as much as several hundred percent. Initial radiometric age determinations, all K-Ar and fission track, suggest that the rhyolite lava field grew during a period of at least 2 m.y. Subsequent 40Ar/39Ar ages indicate that the period of growth was no more than 100 000 years. The time-space-composition relations thus suggest that the Taylor Creek Rhyolite was erupted from a single magma reservoir whose average width was at least 30 km, comparable in size to several penecontemporaneous nearby calderas. However, this rhyolite apparently is not related to a caldera structure. Possibly, the Taylor Creek Phyolite magma body never became sufficiently volatile rich to produce a large-volume pyroclastic eruption and associated caldera collapse, but instead leaked repeatedly to feed many relatively small domes and flows. The new 40Ar/39Ar ages do not resolve preexisting unknown relative-age relations among the domes and flows of the lava field. Nonetheless, the indicated geologically brief period during which Taylor Creek Rhyolite magma was

  4. The Taylor Creek Rhyolite of New Mexico: a rapidly emplaced field of lava domes and flows

    NASA Astrophysics Data System (ADS)

    Duffield, Wendell A.; Dalrymple, G. Brent

    1990-08-01

    The Tertiary Taylor Creek Rhyolite of southwest New Mexico comprises at least 20 lava domes and flows. Each of the lavas was erupted from its own vent, and the vents are distributed throughout a 20 km by 50 km area. The volume of the rhyolite and genetically associated pyroclastic deposits is at least 100 km3 (denserock equivalent). The rhyolite contains 15% 35% quartz, sanidine, plagioclase, ±biotite, ±hornblende phenocrysts. Quartz and sanidine account for about 98% of the phenocrysts and are present in roughly equal amounts. With rare exceptions, the groundmass consists of intergrowths of fine-grained silica and alkali feldspar. Whole-rock major-element composition varies little, and the rhyolite is metaluminous to weakly peraluminous; mean SiO2 content is about 77.5±0.3%. Similarly, major-element compositions of the two feldsparphenocryst species also are nearly constant. However, whole-rock concentrations of some trace-elements vary as much as several hundred percent. Initial radiometric age determinations, all K-Ar and fission track, suggest that the rhyolite lava field grew during a period of at least 2 m.y. Subsequent 40Ar/39Ar ages indicate that the period of growth was no more than 100 000 years. The time-space-composition relations thus suggest that the Taylor Creek Rhyolite was erupted from a single magma reservoir whose average width was at least 30 km, comparable in size to several penecontemporaneous nearby calderas. However, this rhyolite apparently is not related to a caldera structure. Possibly, the Taylor Creek Phyolite magma body never became sufficiently volatile rich to produce a large-volume pyroclastic eruption and associated caldera collapse, but instead leaked repeatedly to feed many relatively small domes and flows. The new 40Ar/39Ar ages do not resolve preexisting unknown relative-age relations among the domes and flows of the lava field. Nonetheless, the indicated geologically brief period during which Taylor Creek Rhyolite magma was

  5. Field Application of a Rapid Spectrophotometric Method for Determination of Persulfate in Soil

    PubMed Central

    Cunningham, Colin J.; Pitschi, Vanessa; Anderson, Peter; Barry, D. A.; Patterson, Colin; Peshkur, Tanya A.

    2013-01-01

    Remediation of hydrocarbon contaminated soils can be performed both in situ and ex situ using chemical oxidants such as sodium persulfate. Standard methods for quantifying persulfate require either centrifugation or prolonged settling times. An optimized soil extraction procedure was developed for persulfate involving simple water extraction using a modified disposable syringe. This allows considerable saving of time and removes the need for centrifugation. The extraction time was reduced to only 5 min compared to 15 min for the standard approach. A comparison of the two approaches demonstrated that each provides comparable results. Comparisons were made using high (93 g kg−1 soil) and low (9.3 g kg−1 soil) additions of sodium persulfate to a petroleum hydrocarbon-contaminated soil, as well as sand spiked with diesel. Recoveries of 95±1% and 96±10% were observed with the higher application rate in the contaminated soil and spiked sand, respectively. Corresponding recoveries of 86±5% and 117±19% were measured for the lower application rate. Results were obtained in only 25 min and the method is well suited to batch analyses. In addition, it is suitable for application in a small field laboratory or even a mobile, vehicle-based system, as it requires minimal equipment and reagents. PMID:23776446

  6. Rapid identification of Pseudomonas aeruginosa by pulsed-field gel electrophoresis

    PubMed Central

    Selim, Samy; El Kholy, Iman; Hagagy, Nashwa; El Alfay, Sahar; Aziz, Mohamed Abdel

    2015-01-01

    Twenty clinical Pseudomonas aeruginosa isolates recovered from patients admitted to The General Hospital in Ismailia Governorate (Egypt) were examined in this study. We analysed P. aeruginosa ATCC 9027 (as a control strain) and 19 of the isolates after digestion with SpeI restriction endonuclease. After this we conducted a pulsed-field gel electrophoresis (PFGE) and typed the obtained 10 unique patterns, designated as A, A1, B, B1, C, C1, D, D1, E and F. We evaluated the genetic relatedness between all strains, based on ≥87% band identity. As a result, the isolates were grouped in the 10 clusters as follows: patterns A, A1, B, B1, C contained two strains each and patterns C1, D, D1, E contained a single strain each; the five remaining strains were closely related (genomic pattern F). One isolate belonged to antibiotype ‘b’. The genotype patterns of the P. aeruginosa ATCC 9027 control strain and isolate no. 11 were closely related and had two different antibiotypes ‘d’ and ‘c’, respectively. PMID:26019629

  7. Rapid detection of peanut oil adulteration using low-field nuclear magnetic resonance and chemometrics.

    PubMed

    Zhu, Wenran; Wang, Xin; Chen, Lihua

    2017-02-01

    (1)H low-field nuclear magnetic resonance (LF-NMR) and chemometrics were employed to screen the quality changes of peanut oil (PEO) adulterated with soybean oil (SO), rapeseed oil (RO), or palm oil (PAO) in ratios ranging from 0% to 100%. Significant differences in the LF-NMR parameters, single component relaxation time (T2W), and peak area proportion (S21 and S22), were detected between pure and adulterated peanut oil samples. As the ratio of adulteration increased, the T2W, S21, and S22 changed linearly; however, the multicomponent relaxation times (T21 and T22) changed slightly. The established principal component analysis or discriminant analysis models can correctly differentiate authentic PEO from fake and adulterated samples with at least 10% of SO, RO, or PAO. The binary blends of oils can be clearly classified by discriminant analysis when the adulteration ratio is above 30%, illustrating possible applications in screening the oil species in peanut oil blends. PMID:27596419

  8. Modified full-field optical coherence tomography: A novel tool for rapid histology of tissues

    PubMed Central

    Jain, Manu; Shukla, Nidhi; Manzoor, Maryem; Nadolny, Sylvie; Mukherjee, Sushmita

    2011-01-01

    Background: Here, we report the first use of a commercial prototype of full-field optical coherence tomography called Light-CT™. Based on the principle of white light interferometry, Light-CT™ generates quick high-resolution three-dimensional tomographic images from unprocessed tissues. Its advantage over the current intra-surgical diagnostic standard, i.e. frozen section analysis, lies in the absence of freezing artifacts, which allows real-time diagnostic impressions, and/or for the tissues to be triaged for subsequent conventional histopathology. Materials and Methods: In this study, we recapitulate known normal histology in nine formalin fixed ex vivo rat organs (skin, heart, lung, liver, stomach, kidney, prostate, urinary bladder, and testis). Large surface and virtually sectioned stacks of images at varying depths were acquired by a pair of 10×/0.3 numerical aperture water immersion objectives, processed and visualized in real time. Results: Normal histology of the following organs was recapitulated by identifying various tissue microstructures. Skin: epidermis, dermal-epidermal junction and hair follicles with surrounding sebaceous glands in the dermis. Stomach: mucosa with surface pits, submucosa, muscularis propria and serosa. Liver: hepatocytes separated by sinusoidal spaces, central veins and portal triad. Kidney: convoluted tubules, medullary rays (straight tubules) and collecting ducts. Prostate: acini and fibro-muscular stroma. Lung: bronchi, bronchioles, alveolar ducts, alveoli and pleura. Urinary bladder: urothelium, lamina propria, muscularis propria, and serosa. Testis: seminiferous tubules with intra-tubular sperms. Conclusion: Light-CT™ is a powerful imaging tool to perform fast histology on fresh and fixed tissues, without introducing artifacts. Its compact size, ease of handling, fast image acquisition and safe incident light levels makes it well-suited for various intra-operative and intra-procedural triaging and decision making

  9. Rapid Microbiome Changes in Freshly Deposited Cow Feces under Field Conditions.

    PubMed

    Wong, Kelvin; Shaw, Timothy I; Oladeinde, Adelumola; Glenn, Travis C; Oakley, Brian; Molina, Marirosa

    2016-01-01

    Although development of next generation sequencing (NGS) has substantially improved our understanding of the microbial ecology of animal feces, previous studies have mostly focused on freshly excreted feces. There is still limited understanding of the aging process dynamics of fecal microbiomes in intact cowpats exposed to natural environments. Fresh cowpats were sampled at multiple time points for 57 days under field conditions; half the samples were exposed to sunlight (unshaded) while the other half was protected from sunlight (shaded). The 16SRNA hypervariable region 4 was amplified from each sample and sequenced on an Illumina MiSeq Platform. While Clostridia, Bacteroidia, and Sphingobacteria were dominant classes of bacteria in fresh cowpats, Alphaproteobacteria, Betaproteobacteria, Actinobacteria, and Bacilli were the dominant classes by the end of the study, indicating a general shift from anaerobic to aerobic bacterial populations. This change was most likely influenced by the shift from cattle gut (anaerobic) to pasture ground (aerobic). Reduced moisture in cowpats may also contribute to the community shift since air can penetrate the dryer cowpat more easily. Twelve genera consisting pathogenic bacteria were detected, with Mycobacterium, Bacillus, and Clostridium being the most abundant; their combined abundance accounts for 90% of the total pathogenic genera. Taxonomic richness and diversity increased throughout the study for most samples, which could be due to bacteria regrowth and colonization of bacteria from the environment. In contrast to the high taxonomic diversity, the changes of PICRUSt inferred function profile were minimal for all cowpats throughout the study, which suggest that core functions predicted by PICRUSt may be too conserved to distinguish differences between aerobe and anaerobe. To the best of our knowledge, this is the first study demonstrating that cowpat exposure to air and sunlight can cause drastic microbiome changes soon

  10. Rapid Microbiome Changes in Freshly Deposited Cow Feces under Field Conditions

    PubMed Central

    Wong, Kelvin; Shaw, Timothy I.; Oladeinde, Adelumola; Glenn, Travis C.; Oakley, Brian; Molina, Marirosa

    2016-01-01

    Although development of next generation sequencing (NGS) has substantially improved our understanding of the microbial ecology of animal feces, previous studies have mostly focused on freshly excreted feces. There is still limited understanding of the aging process dynamics of fecal microbiomes in intact cowpats exposed to natural environments. Fresh cowpats were sampled at multiple time points for 57 days under field conditions; half the samples were exposed to sunlight (unshaded) while the other half was protected from sunlight (shaded). The 16SRNA hypervariable region 4 was amplified from each sample and sequenced on an Illumina MiSeq Platform. While Clostridia, Bacteroidia, and Sphingobacteria were dominant classes of bacteria in fresh cowpats, Alphaproteobacteria, Betaproteobacteria, Actinobacteria, and Bacilli were the dominant classes by the end of the study, indicating a general shift from anaerobic to aerobic bacterial populations. This change was most likely influenced by the shift from cattle gut (anaerobic) to pasture ground (aerobic). Reduced moisture in cowpats may also contribute to the community shift since air can penetrate the dryer cowpat more easily. Twelve genera consisting pathogenic bacteria were detected, with Mycobacterium, Bacillus, and Clostridium being the most abundant; their combined abundance accounts for 90% of the total pathogenic genera. Taxonomic richness and diversity increased throughout the study for most samples, which could be due to bacteria regrowth and colonization of bacteria from the environment. In contrast to the high taxonomic diversity, the changes of PICRUSt inferred function profile were minimal for all cowpats throughout the study, which suggest that core functions predicted by PICRUSt may be too conserved to distinguish differences between aerobe and anaerobe. To the best of our knowledge, this is the first study demonstrating that cowpat exposure to air and sunlight can cause drastic microbiome changes soon