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Sample records for red oak revealed

  1. Desiccation sensitivity of white and black (red) oak embryonic axes

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The genus Quercus is the most important aggregation of hardwoods found on the North American and European continents. Quercus is generally divided into two categories black (red) and white oak groups though a third category of live oaks is sometimes recognized as well. Natural populations of oaks a...

  2. Sporulation capacity of Phytophthora ramorum on northern red oak and chestnut oak

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Branches from six 2 to 3-year old northern red and chestnut oak seedlings were dip-inoculated with ca. 5,000 sporangia per milliliter of Phytophthora ramorum isolate Pr-6 and incubated at 100 percent relative humidity in dew chambers for 6 days. Three plants were then used to assess sporangia produ...

  3. Infectivity and sporulation of Phytophthora ramorum on northern red oak and chestnut oak

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Branches from northern red and chestnut oak seedlings were dip-inoculated with 5,000 sporangia per milliliter of Phytophthora ramorum and incubated at 100 percent relative humidity in dew chambers for 6 days. Three plants were then used to assess sporangia production, while the other three plants w...

  4. Evaluation of spectral light management on growth of container-grown willow oak, nuttall oak and summer red maple

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Plant response to blue, red, gray or black shade cloth was evaluated with willow oak (Quercus phellos L.), Nuttall oak (Quercus nuttallii Palmer, Nuttall) and Summer Red maple (Acer rubrum L. ‘Summer Red’) liners. Light transmitted through the colored shade cloth had no influence on germination of ...

  5. Monitoring oak-hickory forest change during an unprecedented red oak borer outbreak in the Ozark Mountains: 1990 to 2006

    NASA Astrophysics Data System (ADS)

    Jones, Joshua S.; Tullis, Jason A.; Haavik, Laurel J.; Guldin, James M.; Stephen, Fred M.

    2014-01-01

    Upland oak-hickory forests in Arkansas, Missouri, and Oklahoma experienced oak decline in the late 1990s and early 2000s during an unprecedented outbreak of a native beetle, the red oak borer (ROB), Enaphalodes rufulus (Haldeman). Although remote sensing supports frequent monitoring of continuously changing forests, comparable in situ observations are critical for developing an understanding of past and potential ROB damage in the Ozark Mountains. We categorized forest change using a normalized difference water index (NDWI) applied to multitemporal Landsat TM and ETM+ imagery (1990, 2001, and 2006). Levels of decline or growth were categorized using simple statistical thresholds of change in the NDWI over time. Corresponding decline and growth areas were then observed in situ where tree diameter, age, crown condition, and species composition were measured within variable radius plots. Using a machine learning decision tree classifier, remote sensing-derived decline and growth was characterized in terms of in situ observation. Plots with tree quadratic mean diameter at breast height ≥21.5 cm were categorized remotely as in severe decline. Landsat TM/ETM+-based NDWI derivatives reveal forest decline and regrowth in post-ROB outbreak surveys. Historical and future Landsat-based canopy change detection should be incorporated with existing landscape-based prediction of ROB hazard.

  6. Pollen morphology and plant taxonomy of red oaks in eastern North America

    SciTech Connect

    Solomon, A.M.

    1983-04-01

    Identification of Quercus (oak) pollen taxa could enhance Quaternary palynological interpretations from eastern North America. A first step is to determine a morphological and taxonomic basis for such identifications. Scanning electron microscopy was utilized to examine exine-surface features of 266 specimens representing 21 red oak (subgen. Erythrobalanus) species from eastern North America, and two intermediate oak (subgen. Protobalanus) species from the desert southwest. Twenty pollen morphological characteristics defined previously were tabulated for each of 324 pollen grains. The data were subjected to cluster analyses. Cluster diagrams were compared with traditional oak systematics. Pollen morphology and plant taxonomy compared poorly with respect to series and species relationships among the red oaks, apparently due as much to high intraspecific and low interspecific variability in pollen-morphological characters as to the uncertain taxonomy of red oaks. Pollen morphology, however, does support the hypothesis of subgeneric oak evolution from intermediate oaks to the series Virentes of white oaks, and from more advanced white oaks to the red oak species. 19 references, 25 figures, 1 table.

  7. A preliminary study about the influence of high hydrostatic pressure processing in parallel with oak chip maceration on the physicochemical and sensory properties of a young red wine.

    PubMed

    Tao, Yang; Sun, Da-Wen; Górecki, Adrian; Błaszczak, Wioletta; Lamparski, Grzegorz; Amarowicz, Ryszard; Fornal, Józef; Jeliński, Tomasz

    2016-03-01

    The influence of high hydrostatic pressure (HHP) processing in parallel with oak chip maceration on the physicochemical and sensory properties of a young red wine was investigated preliminarily. Wines were treated by HHP at 250, 450 and 650MPa for up to 45min and French oak chips (5g/L) were added. HHP enhanced the extraction of phenolics from oak chips. The phenolic contents and antioxidant activity of the wine increased after HHP processing in the presence of oak chips. Meanwhile, the anthocyanin content and wine color intensity decreased in the first 5min of pressure treatment and then increased gradually. The multivariate analysis revealed that "pressure holding time" was the key factor affecting wine physicochemical characteristics during HHP processing in the presence of oak chips. Furthermore, oak chip maceration with and without HHP processing weakened the intensities of several sensory attributes and provided the wine with an artificial taste. PMID:26471591

  8. Seasonal variation in the structure of red reflectance of leaves from yellow poplar, red oak, and red maple

    NASA Technical Reports Server (NTRS)

    Brakke, Thomas W.; Wergin, William P.; Erbe, Eric F.; Harnden, Joann M.

    1993-01-01

    The light scattered from leaves was measured as a function of view angle in the principal plane for yellow poplar, red oak, and red maple. The source was a parallel-polarized helium-neon laser. Yellow poplar leaves had the highest reflectance of the three species, which may have been due to its shorter palisade cells and more extensive spongy mesophyll. Prior to senescence, there was a significant decrease, but not total extinction, in the reflectance of the beam incident at 60 deg from nadir on the adaxial side of the leaves of all three species. Low-temperature SEM observations showed differences in the surface wax patterns among the three species but did not indicate a cause of the reflectance changes other than possibly the accumulation and aging of the wax.

  9. Development of red oak seedlings using plastic shelters on hardwood sites in West Virginia. Forest Service research paper (Final)

    SciTech Connect

    Smith, H.C.

    1993-04-01

    Plastic shelters were used to grow red oak seedlings on good-to-excellent Appalachian hardwood growing sites in north central West Virginia. Preliminary results indicate that shelters have the potential to stimulate development of red oak seedlingheight growth, especially if height growth continues once the seedling tops are above the 5-foot-tall shelters.

  10. KINETICS OF LEAF TEMPERATURE FLUCTUATION AFFECT ISOPRENE EMISSION FROM RED OAK (QUERCUS RUBRA) LEAVES

    EPA Science Inventory

    Because the rate of isoprene (2-methyl-1,3-butadiene) emission from plants is highly temperature-dependent, we investigated the natural fluctuations on leaf temperature and the effects of rapid temperature change on isoprene emission of red oak (Quercus rubra L.) leaves at the to...

  11. SYNTHESIS OF ECTOMYCORRHIZAE ON NORTHERN RED OAK SEEDLINGS IN MICHIGAN NURSERY

    EPA Science Inventory

    Vegetative inoculum of the ectomycorrhizal fungus Suillus luteus was thoroughly mixed into fumigated nursery soil, and northern red oak seedlings of four families were evaluated one and two years after sowing for ectomycorrhizal development, growth, and nutrition. t the end of ye...

  12. Phenology, dichogamy, and floral synchronization in a northern red oak (Quercus Rubra L.) seed orchard

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We developed a novel scoring system to assess spring phenology in a northern red oak clonal seed orchard. The system was used to score between 304 and 364 ramets for three reproductive seasons and place clones into early, middle, and late phenology groups. While the absolute number of clones in ea...

  13. Underplanting northern red oak in Missouri without herbicides. Forest Service general technical report

    SciTech Connect

    Johnson, P.S.

    1992-01-01

    The report describes a provisional assessment of the effectiveness of applying herbicides to woody competitors between 0.5- and 1.5-inches d.b.h. before underplanting northern red oak. Results suggest that no weed control, i.e., not using herbicides, would require only modest increases in the numbers or initial size of nursery stock needed to obtain a given future stocking goal.

  14. Fuel values of stems and branches in post oak and red maple

    SciTech Connect

    Harris, R.A.

    1985-01-01

    In red maple (Acer rubrum), there was n.s.d. in higher heating value (HHV) between stem wood and branch wood or between stem bark and branch bark. In post oak (Quercus stellata) the HHV of stem bark was significantly higher than that of branch bark, but there was n.s.d. between stem wood and branch wood. For both species the wood had a significantly higher HHV than the bark. 1 reference.

  15. Survival of northern red oak acorns after fall burning. Forest Service research paper (Final)

    SciTech Connect

    Auchmoody, L.R.; Smith, H.C.

    1993-01-01

    The survival of recently fallen northern red oak acorns after exposure to a cool fall burn was evaluated in northwestern Pennsylvania. Although no acorns were consumed by the fire, some were charred. Between 40 and 49 percent of the acorns in the litter were destroyed. The fire was not hot enough to kill Curculio larvae within the acorns. Burned acorns infested with Curculio that survived the fire had 20 percent lower germination rates than unburned acorns.

  16. Gypsy moth (Lepidoptera: Lymantriidae) consumption and utilization of northern red oak and white oak foliage exposed to simulated acid rain and ozone

    SciTech Connect

    Cannon, W.N. Jr. )

    1993-06-01

    Two-year-old seedlings of white oak, Quercus alba L., and red oak, Q. rubra L., were exposed to ozone (O[sub 3]) fumigations in four continuously stirred tank reactor chambers in the greenhouse for 8 h/d, 3 d/wk for 6 wk. Fumigation treatments were charcoal-filtered air (CFA) and CFA + 0.15 ppm O[sub 3]. Two simulated rain treatments, pH 4.2 and pH 3.0, of-1.25 cm were applied once each week in rain-simulation chambers. Gypsy moth, Lymantria dispar (L.), third instars were allowed to feed on leaf disks from treated seedlings for 24 h. Leaf area consumed, food assimilated, weight gain, and relative growth rate (RGR) were examined. Overall, larvae fed white oak foliage consumed more foliage and gained more weight than those fed red oak foliage. Response to the fumigation and rain treatments was different for each oak species. On white oak foliage, larvae consumed significantly less foliage treated with CFA + pH 3.0 rain, but the lowest RGR occurred with the 0.15 ppm O[sub 3] + pH 4.2 rain treatment. The most food assimilated, greatest weight gain, and highest RGR occurred with the CFA + pH 4.2 rain control. Red oak foliage consumed was equivalent for all treatments, but foliage exposed to CFA + pH 3.0 rain resulted in more food assimilated, greater weight gain, and higher RGR for that species.

  17. Planting northern red oak acorns: Is size and planting depth important. Forest Service research paper (Final)

    SciTech Connect

    Auchmoody, L.R.; Smith, H.C.; Walters, R.S.

    1994-10-27

    A study was conducted in northern Pennsylvania to determine whether predation by small mammals and insects is related to the size of red oak acorns. Three sizes of acorns were used along with two planting techniques and three levels of overstory shading. Three-year results indicated that acorn size is not a factor in mammal and insect predation. Acorn size did not affect 3-year survival. Although 3-year total height growth was statistically different after 3 years, the differences were too small for practical use.

  18. A comparative study of physiological and morphological seedling traits associated with shade tolerance in introduced red oak (Quercus rubra) and native hardwood tree species in southwestern Germany.

    PubMed

    Kuehne, Christian; Nosko, Peter; Horwath, Tobias; Bauhus, Jürgen

    2014-02-01

    Northern red oak (Quercus rubra L.), a moderately shade-tolerant tree species, is failing to regenerate throughout its native North American range, while successful recruitment in Central Europe has been observed since its introduction. To examine whether comparative photosynthetic performance could explain the regeneration success of this non-native species in Central Europe, we compared the physiological and morphological seedling traits of red oak with three co-occurring tree species under three canopy types in southwestern Germany. Native species included a moderately shade-tolerant native oak (Quercus robur L.) and two shade-tolerant species (Acer pseudoplatanus L. and Carpinus betulus L.). The photosynthetic traits of non-native red oak seedlings were similar to those reported for this species in the native range, where shade-tolerant competitors readily outperform red oak under low light conditions. However, compared with native shade-tolerant species in Europe, red oak seedlings photosynthesized efficiently, especially under closed canopies and in small canopy gaps, exhibiting high photosynthetic capacity, low leaf dark respiration and leaf-level light compensation points that were similar to the more shade-tolerant species. The superior net carbon gain of red oak seedlings at low and moderate light levels was likely facilitated by high leaf areas and reflected by seedling dry masses that were greater than the observed native European species. A competitive advantage for red oak was not evident because relative height growth was inferior to seedlings of co-occurring species. In North America, the inability of seedlings to compete with shade-tolerant tree species in deeply shaded understories is central to the problem of poor oak recruitment. Our study suggests that the ability of non-native red oak to perform equally well to native shade-tolerant species under a variety of light conditions could contribute to the consistent success of red oak regeneration

  19. Volatile compounds of red wines macerated with Spanish, American, and French oak chips.

    PubMed

    Rodríguez-Bencomo, Juan José; Ortega-Heras, Miriam; Pérez-Magariño, Silvia; González-Huerta, Carlos

    2009-07-22

    The volatile composition of a red wine aged for 2 months with three different Spanish oak chips (Quercus pyrenaica and Quercus petraea) from different regions of Castilla y León was compared with that of wines aged with American and French chips. In general, the extraction kinetics showed that the maximum concentration of the volatile compounds extracted from wood can be reached in only 1 month. In the final wines, the levels of furanic aldehydes and eugenol were higher in the wines macerated with Spanish chips, whereas cis-whiskey-lactone, vanillin, and methyl vanillate showed higher levels in wines treated with American chips. Among the wines treated with the different Spanish chips, the differences observed in the volatile composition were more related to the geographical origin of the forest than to the botanical species. In general, the wines macerated with Spanish chips showed levels of oak-related volatile compounds that were more similar to those macerated with French chips than to those macerated with American chips. PMID:19601669

  20. Between-Site Differences in the Scale of Dispersal and Gene Flow in Red Oak

    PubMed Central

    Moran, Emily V.; Clark, James S.

    2012-01-01

    Background Nut-bearing trees, including oaks (Quercus spp.), are considered to be highly dispersal limited, leading to concerns about their ability to colonize new sites or migrate in response to climate change. However, estimating seed dispersal is challenging in species that are secondarily dispersed by animals, and differences in disperser abundance or behavior could lead to large spatio-temporal variation in dispersal ability. Parentage and dispersal analyses combining genetic and ecological data provide accurate estimates of current dispersal, while spatial genetic structure (SGS) can shed light on past patterns of dispersal and establishment. Methodology and Principal Findings In this study, we estimate seed and pollen dispersal and parentage for two mixed-species red oak populations using a hierarchical Bayesian approach. We compare these results to those of a genetic ML parentage model. We also test whether observed patterns of SGS in three size cohorts are consistent with known site history and current dispersal patterns. We find that, while pollen dispersal is extensive at both sites, the scale of seed dispersal differs substantially. Parentage results differ between models due to additional data included in Bayesian model and differing genotyping error assumptions, but both indicate between-site dispersal differences. Patterns of SGS in large adults, small adults, and seedlings are consistent with known site history (farmed vs. selectively harvested), and with long-term differences in seed dispersal. This difference is consistent with predator/disperser satiation due to higher acorn production at the low-dispersal site. While this site-to-site variation results in substantial differences in asymptotic spread rates, dispersal for both sites is substantially lower than required to track latitudinal temperature shifts. Conclusions Animal-dispersed trees can exhibit considerable spatial variation in seed dispersal, although patterns may be surprisingly

  1. Sensory-directed identification of taste-active ellagitannins in American (Quercus alba L.) and European oak wood (Quercus robur L.) and quantitative analysis in bourbon whiskey and oak-matured red wines.

    PubMed

    Glabasnia, Arne; Hofmann, Thomas

    2006-05-01

    Aimed at increasing our knowledge on the sensory-active nonvolatiles migrating from oak wood into alcoholic beverages upon cooperaging, an aqueous ethanolic extract prepared from oak wood chips (Quercus alba L.) was screened for its key taste compounds by application of the taste dilution analysis. Purification of the compounds perceived with the highest sensory impacts, followed by liquid chromatography/mass spectrometry as well as one-dimensional and two-dimensional NMR experiments, revealed the ellagitannins vescalagin, castalagin, and grandinin, the roburins A-E, and 33-deoxy-33-carboxyvescalagin as the key molecules imparting an astringent oral sensation. To the best of our knowledge, 33-deoxy-33-carboxyvescalagin has as yet not been reported as a phytochemical in Q. alba L. In addition, the sensory activity of these ellagitannins was determined for the first time on the basis of their human threshold concentrations and dose/response functions. Furthermore, the ellagitannins have been quantitatively determined in extracts prepared from Q. alba L. and Quercus robur L., respectively, as well as in bourbon whiskey and oak-matured red wines, and the sensory contribution of the individual compounds has been evaluated for the first time on the basis of dose/activity considerations. PMID:16637699

  2. Sensitivity of red oak (Quercus rubra L.) and American beech (Fagus grandifolia Ehrh.) seedlings to sodium salts in solution culture.

    PubMed

    Thorton, F C; Schaedle, M; Raynal, D J

    1988-06-01

    Sodium salt sensitivity of red oak (Quercus rubra L.) and American beech (Fagus grandifolia Ehrh.) was evaluated in solution culture. Both species showed symptoms of salt injury when grown in the presence of less than 10 mM Na. In red oak, leaf symptoms first appeared at a sodium concentration of 6.0 mM and leaf weight was significantly reduced at 7.5 mM Na. Leaf, stem and root dry weights of American beech were significantly reduced in the presence of 4.0 mM sodium. In both species, browning of leaf margins and necrosis were evident in the Na-treated plants. The observed symptoms were associated with high concentrations of sodium in the tissues. Neither species appears to have control over sodium uptake and translocation. PMID:14972826

  3. Evidence for selection on a CONSTANS-like gene between two red oak species

    PubMed Central

    Lind-Riehl, Jennifer F.; Sullivan, Alexis R.; Gailing, Oliver

    2014-01-01

    Background and Aims Hybridizing species such as oaks may provide a model to study the role of selection in speciation with gene flow. Discrete species' identities and different adaptations are maintained among closely related oak species despite recurrent gene flow. This is probably due to ecologically mediated selection at a few key genes or genomic regions. Neutrality tests can be applied to identify so-called outlier loci, which demonstrate locus-specific signatures of divergent selection and are candidate genes for further study. Methods Thirty-six genic microsatellite markers, some with putative functions in flowering time and drought tolerance, and eight non-genic microsatellite markers were screened in two population pairs (n = 160) of the interfertile species Quercus rubra and Q. ellipsoidalis, which are characterized by contrasting adaptations to drought. Putative outliers were then tested in additional population pairs from two different geographic regions (n = 159) to support further their potential role in adaptive divergence. Key Results A marker located in the coding sequence of a putative CONSTANS-like (COL) gene was repeatedly identified as under strong divergent selection across all three geographically disjunct population pairs. COL genes are involved in the photoperiodic control of growth and development and are implicated in the regulation of flowering time. Conclusions The location of the polymorphism in the Quercus COL gene and given the potential role of COL genes in adaptive divergence and reproductive isolation makes this a promising candidate speciation gene. Further investigation of the phenological characteristics of both species and flowering time pathway genes is suggested in order to elucidate the importance of phenology genes for the maintenance of species integrity. Next-generation sequencing in multiple population pairs in combination with high-density genetic linkage maps could reveal the genome-wide distribution of outlier genes

  4. Sedimentation and petrology of Fanshawe sand, Red Oak field, Arkoma basin, Oklahoma

    SciTech Connect

    Pittman, E.D.; Wray, L.L. )

    1989-08-01

    The Fanshawe sand, a very fine to fine-grained lithic sandstone, probably formed in moderate to deep water downslope from a delta system to the east. Sediment-laden discharge flowed from east to west as channelized, bottom-hugging density currents. Deposition of the Fanshawe sand seems to have been restricted to a west-southwest-trending zone approximately 2 mi wide on the north side of Red Oak field. The sand is a composite of a series of narrow, shifting, meandering submarine channels that often are stacked. Stratigraphic cross sections show extreme variability, even along depositional strike, and individual channels typically are narrower than the distance between development wells. Reservoir quality is enhanced where these narrow channels coalesce horizontally and vertically. Net sand thickness ranges from 36 to 180 ft with associated reserves of up to 14 bcf/well. Completion rates can reach 8 mmcf/day with decline rates averaging 6%. Preliminary results of an increased density drilling program further substantiate the narrow, sinuous nature of these fan channels. Air drilling causes severe hole washouts, making net pay determinations questionable. But by mapping overall net sand trends, it is possible to high-grade drilling prospects. Prediction of porosity development, however, remains difficult. Porosity in the Fanshawe is due to (1) precipitation of pore-lining chlorite, which retarded quartz cementation by blocking potential nucleation sites on detrital quartz grains and preserved primary porosity, and (2) dissolution of feldspars and lithic fragments. The better reservoir rock has both porosity types. Where pore-lining chlorite was absent, thin, or discontinuous, quartz overgrowths developed and intergranular porosity decreased. This created a pore geometry consisting of poorly interconnected, disseminated, intragranular/moldic, dissolution pores and low permeability.

  5. Base Cations In Northern Red Oak Trees, Soils and Surface Waters of Shenandoah National Park, VA

    NASA Astrophysics Data System (ADS)

    Cosby, B. J.; Blankinship, J. C.; Webb, J. R.; Welsch, D. L.; Deviney, F. A.

    2002-05-01

    Depletion of exchangeable base cations (especially calcium and magnesium) in soils is recognized as a problem for the health of forest ecosystems as well as for the acid-base balance of drainage streams. Factors that may reduce base-cation supplies in forest soils include uptake associated with forest regeneration and leaching associated with acidic deposition. We examine here the linkages between the base status of forest soils, base content of wood in trees, and streamwater acid neutralizing capacity (ANC) in the watersheds of western Virginia's Shenandoah National Park. Prior to establishment of the park in the late 1920s, the forest in the park area was intensively harvested and much of the land was cleared for agriculture. At present, most of the park is protected from direct human disturbance and occupied by a regenerating mixed hardwood forest of about 70-years age. The park does, however, receive an indirect anthropogenic impact in the form of acidic deposition. We analyzed quarterly streamwater samples taken from 14 catchments in SNP over the period 1988-1999, data from seventy-nine soil pits sampled throughout SNP in 2000, cores of bole wood from northern red oak trees at 28 sites (also sampled in 2000), and the species - water quality relationships derived from a previous study of fish populations in the SNP (1998). Contemporary ecosystem attributes in the park, including forest-cover type and fish species distributions, are closely associated with the distribution of the park's three major bedrock types: siliciclastic rocks (sandstones and shales), granitic rocks, and basaltic rocks. Areas underlain by basaltic bedrock have a greater capacity for export of base cations in streamwater (higher stream ANC and greater fish species richness), have higher soil base saturations, and have trees with higher bole wood content of the important nutrient cations Ca and Mg. Granitic areas are intermediate, and siliciclastic areas have the lowest base cation

  6. Spatial heterogeneity in the relative impacts of foliar quality and predation pressure on red oak, Quercus rubra, arthropod communities.

    PubMed

    Zehnder, Caralyn B; Stodola, Kirk W; Cooper, Robert J; Hunter, Mark D

    2010-12-01

    Predation pressure and resource availability often interact in structuring herbivore communities, with their relative influence varying in space and time. The operation of multiple ecological pressures and guild-specific herbivore responses may combine to override simple predictions of how the roles of plant quality and predation pressure vary in space. For 2 years at the Coweeta LTER in the Southern Appalachian Mountains, we conducted a bird exclosure experiment on red oak (Quercus rubra) saplings to investigate the effects of bird predation on red oak arthropod communities. We established bird exclosures at six sites along an elevational gradient and estimated variation in foliar nitrogen and bird predation pressure along this gradient. Foliar nitrogen concentrations increased with elevation while our index of bird predation pressure was variable across sites. Greater arthropod densities were detected inside exclosures; however, this result was mainly driven by the response of phloem feeders which were much more prevalent inside exclosures than on control trees. There was little evidence for an effect of bird predation on the other arthropod guilds. Consequently, there was no evidence of a trophic cascade either in terms of leaf damage or tree growth. Finally, we found more variation in arthropod density among trees within sites than variation in arthropod density among sites, indicating the importance of micro-site variation in structuring arthropod communities. PMID:20711610

  7. Water use and carbon exchange of red oak- and eastern hemlock-dominated forests in the northeastern USA: implications for ecosystem-level effects of hemlock woolly adelgid.

    PubMed

    Hadley, Julian L; Kuzeja, Paul S; Daley, Michael J; Phillips, Nathan G; Mulcahy, Thomas; Singh, Safina

    2008-04-01

    Water use and carbon exchange of a red oak-dominated (Quercus rubra L.) forest and an eastern hemlock-dominated (Tsuga canadensis L.) forest, each located within the Harvard Forest in north-central Massachusetts, were measured for 2 years by the eddy flux method. Water use by the red oak forest reached 4 mm day(-1), compared to a maximum of 2 mm day(-1) by the eastern hemlock forest. Maximal carbon (C) uptake rate was also higher in the red oak forest than in the eastern hemlock forest (about 25 versus 15 micromol m(-2) s(-1)). Sap flux measurements indicated that transpiration of red oak, and also of black birch (Betula lenta L.), which frequently replaces eastern hemlock killed by hemlock woolly adelgid (Adelges tsugae Annand.), were almost twice that of eastern hemlock. Despite the difference between species in maximum summertime C assimilation rate, annual C storage of the eastern hemlock forest almost equaled that of the red oak forest because of net C uptake by eastern hemlock during unusually warm fall and spring weather, and a near-zero C balance during the winter. Thus, the effect on C storage of replacing eastern hemlock forest with a forest dominated by deciduous species is unclear. Carbon storage by eastern hemlock forests during fall, winter and spring is likely to increase in the event of climate warming, although this may be offset by C loss during hotter summers. Our results indicate that, although forest water use will decrease immediately following eastern hemlock mortality due to the hemlock woolly adelgid, the replacement of eastern hemlock by deciduous species such as red oak will likely increase summertime water use over current rates in areas where hemlock is a major forest species. PMID:18244947

  8. Development of a fractionation method for the detection and identification of oak ellagitannins in red wines.

    PubMed

    García-Estévez, Ignacio; Escribano-Bailón, M Teresa; Rivas-Gonzalo, Julián C; Alcalde-Eon, Cristina

    2010-02-15

    During maturation and ageing in oak barrels wines improve their organoleptic properties. Ellagitannins can be released from wood to the wine and be involved in oxidation reactions and seem to influence the astringency and colour properties of the wine. Nevertheless, the ellagitannins levels are lower than those of other wine constituents and, consequently, they are not easily detected. This study has developed a two-step fractionation method consisting of a solid phase extraction in C-18 Sep-Pak cartridges followed by size exclusion chromatography in hand-packed Sephadex LH-20 minicolumn for the detection of oak ellagitannins in different types of wines. An HPLC method has also been developed which allows the separation of compounds with the same m/z ratios, facilitating the ellagitannin identification by means of the mass spectrometric analyses. The main oak ellagitannins (grandinin, vescalagin, roburin E and castalagin) were isolated, detected separately and identified in a spiked wine and in three real ones, proving the usefulness of the fractionation method. PMID:20103159

  9. Hydrocarbon Liquid Production via Catalytic Hydroprocessing of Phenolic Oils Fractionated from Fast Pyrolysis of Red Oak and Corn Stover

    SciTech Connect

    Elliott, Douglas C.; Wang, Huamin; Rover, Majorie; Whitmer, Lysle; Smith, Ryan; Brown, Robert C.

    2015-04-13

    Phenolic oils were produced from fast pyrolysis of two different biomass feedstocks, red oak and corn stover and evaluated in hydroprocessing tests for production of liquid hydrocarbon products. The phenolic oils were produced with a bio-oil fractionating process in combination with a simple water wash of the heavy ends from the fractionating process. Phenolic oils derived from the pyrolysis of red oak and corn stover were recovered with yields (wet biomass basis) of 28.7 wt% and 14.9 wt%, respectively, and 54.3% and 58.6% on a carbon basis. Both precious metal catalysts and sulfided base metal catalyst were evaluated for hydrotreating the phenolic oils, as an extrapolation from whole bio-oil hydrotreatment. They were effective in removing heteroatoms with carbon yields as high as 81% (unadjusted for the 90% carbon balance). There was nearly complete heteroatom removal with residual O of only 0.4% to 5%, while N and S were reduced to less than 0.05%. Use of the precious metal catalysts resulted in more saturated products less completely hydrotreated compared to the sulfided base metal catalyst, which was operated at higher temperature. The liquid product was 42-52% gasoline range molecules and about 43% diesel range molecules. Particulate matter in the phenolic oils complicated operation of the reactors, causing plugging in the fixed-beds especially for the corn stover phenolic oil. This difficulty contrasts with the catalyst bed fouling and plugging, which is typically seen with hydrotreatment of whole bio-oil. This problem was substantially alleviated by filtering the phenolic oils before hydrotreating. More thorough washing of the phenolic oils during their preparation from the heavy ends of bio-oil or on-line filtration of pyrolysis vapors to remove particulate matter before condensation of the bio-oil fractions is recommended.

  10. Hydrocarbon Liquid Production via Catalytic Hydroprocessing of Phenolic Oils Fractionated from Fast Pyrolysis of Red Oak and Corn Stover

    DOE PAGESBeta

    Elliott, Douglas C.; Wang, Huamin; Rover, Majorie; Whitmer, Lysle; Smith, Ryan; Brown, Robert C.

    2015-04-13

    Phenolic oils were produced from fast pyrolysis of two different biomass feedstocks, red oak and corn stover and evaluated in hydroprocessing tests for production of liquid hydrocarbon products. The phenolic oils were produced with a bio-oil fractionating process in combination with a simple water wash of the heavy ends from the fractionating process. Phenolic oils derived from the pyrolysis of red oak and corn stover were recovered with yields (wet biomass basis) of 28.7 wt% and 14.9 wt%, respectively, and 54.3% and 58.6% on a carbon basis. Both precious metal catalysts and sulfided base metal catalyst were evaluated for hydrotreatingmore » the phenolic oils, as an extrapolation from whole bio-oil hydrotreatment. They were effective in removing heteroatoms with carbon yields as high as 81% (unadjusted for the 90% carbon balance). There was nearly complete heteroatom removal with residual O of only 0.4% to 5%, while N and S were reduced to less than 0.05%. Use of the precious metal catalysts resulted in more saturated products less completely hydrotreated compared to the sulfided base metal catalyst, which was operated at higher temperature. The liquid product was 42-52% gasoline range molecules and about 43% diesel range molecules. Particulate matter in the phenolic oils complicated operation of the reactors, causing plugging in the fixed-beds especially for the corn stover phenolic oil. This difficulty contrasts with the catalyst bed fouling and plugging, which is typically seen with hydrotreatment of whole bio-oil. This problem was substantially alleviated by filtering the phenolic oils before hydrotreating. More thorough washing of the phenolic oils during their preparation from the heavy ends of bio-oil or on-line filtration of pyrolysis vapors to remove particulate matter before condensation of the bio-oil fractions is recommended.« less

  11. Red nucleus connectivity as revealed by constrained spherical deconvolution tractography.

    PubMed

    Milardi, Demetrio; Cacciola, Alberto; Cutroneo, Giuseppina; Marino, Silvia; Irrera, Mariangela; Cacciola, Giorgio; Santoro, Giuseppe; Ciolli, Pietro; Anastasi, Giuseppe; Calabrò, Rocco Salvatore; Quartarone, Angelo

    2016-07-28

    Previous Diffusion Tensor Imaging studies have demonstrated that the human red nucleus is widely interconnected with sensory-motor and prefrontal cortices. In this study, we assessed red nucleus connectivity by using a multi-tensor model called non- negative Constrained Spherical Deconvolution (CSD), which is able to resolve more than one fiber orientation per voxel. Connections of the red nuclei of fifteen volunteers were studied at 3T using CSD axonal tracking. We found significant connectivity between RN and the following cortical and subcortical areas: cerebellar cortex, thalamus, paracentral lobule, postcentral gyrus, precentral gyrus, superior frontal gyrus and dentate nucleus. We confirmed that red nucleus is tightly linked with the cerebral cortex and has dense subcortical connections with thalamus and cerebellar cortex. These findings may be useful in a clinical context considering that RN is involved in motor control and it is known to have potential to compensate for injury of the corticospinal tract. PMID:27181514

  12. Impact of alternative technique to ageing using oak chips in alcoholic or in malolactic fermentation on volatile and sensory composition of red wines.

    PubMed

    Gómez García-Carpintero, E; Gómez Gallego, M A; Sánchez-Palomo, E; González Viñas, M A

    2012-09-15

    This paper reports on a complete study of the effect of wood, in the form of oak chips, on the volatile composition and sensory characteristics of Moravia Agria wines added at different stages of the fermentation process. Aroma compounds were analyzed by gas chromatography-mass spectrometry (GC-MS). Sensory profile was evaluated by experienced wine-testers. Oak chips were added to wines in two dose rates at different stages of the winemaking process: during alcoholic fermentation (AF), during malolactic fermentation (MLF) and in young, red Moravia Agria wine. Wines fermented with oak chips during AF showed higher concentrations of the ethyl esters of straight-chain fatty acids, ethyl, hexyl, isoamyl acetates and superior alcohols than the control wines. The higher concentrations of benzene compound, oak lactones and furanic compounds were found in wines in contact with oak chips during MLF. The use of oak chips gives rise to a different sensorial profile of wines depending of the point of addition. Higher intensities of woody, coconut, vanilla and sweet spices descriptors were obtained when a large dose rate of chips was employed. PMID:23107700

  13. Kinetic modeling of hardwood prehydrolysis. Part III. Water and dilute acetic acid prehydorlysis of southern red oak

    SciTech Connect

    Conner, A.L.; Lorenz, L.F.

    1986-04-01

    Most processes for utilizing wood as a source of chemicals and liquid fuels include a prehydrolysis step to remove the hemicellulose prior to the main hydrolysis of the cellulose to glucose. Two promising prehydrolysis methods, the Iotech steam explosion process and the Stake process, are based on water prehydrolysis (autohydrolysis). The kinetics of water and of dilute (5%) acetic acid prehydrolysis of southern red oak wood over the temperature range of 170 to 240 C were investigated. Kinetic parameters were determined that permitted modeling not only of xylan removal from the wood but also of the occurrence of xylan oligosaccharides, free xylose, furfural, and further degradation products in the prehydrolyzate. At lower temperatures (approximately 170 to 200 C), xylan removal could be modeled as the sum of two parallel reactions (one for an easily hydrolyzed portion and one for a more resistant portion of xylan) using the equation derived in Part I. At the highest temperature studied (236.9 C), the removal of xylan from the wood was best modeled as a single reaction with a small fraction of the xylan being essentially nonreactive. The occurrence of xylan oligosaccharides, xylose, furfural, and further degradation products in the prehydrolyzate was modeled as consecutive, irreversible pseudo first-order reactions. A timelag associated with the depolymerization of the xylan oligosaccharides to xylose was accounted for in the model by allowing the apparent rate constant for the formation of xylose to increase exponentially with time to a maximum value.

  14. The phenolic chemistry and spectrochemistry of red sweet wine-making and oak-aging.

    PubMed

    Figueiredo-González, M; Cancho-Grande, B; Simal-Gándara, J; Teixeira, N; Mateus, N; De Freitas, V

    2014-01-01

    A natural sweet wine (NSW) was made with dried grapes from Vitis vinifera L. cv Garnacha Tintorera. A fortified sweet wine (FSW) was also obtained: the maceration-alcoholic fermentation of Garnacha Tintorera must was stopped by addition of ethanol 96% (v/v). UV/Vis spectrophotometry and HPLC/DAD-ESI/MS were applied to determine, respectively, the evolution of colour and phenolic compounds in Garnacha Tintorera based-sweet wines during aging. In sweet wines, aging decreased a(∗) (red/green), colour saturation and lightness and increased b(∗) (yellow/blue), and hue angle. Most of the phenolic compounds determined, such as anthocyanins, esters of hydroxycinnamic acids, flavan-3-ols monomers, oligomers and polymers decreased in both sweet wines during aging. On the contrary, hydroxybenzoic and hydroxycinnamic acids and vitisins increased after one year of aging. Despite that both terminal and extension subunit compositions show very small changes, mean degree of polymerisation of proanthocyanidins decline slightly as aging progressed in both sweet wines. PMID:24444970

  15. Pure red-cell aplasia "epidemic"--mystery completely revealed?

    PubMed

    Locatelli, Francesco; Del Vecchio, Lucia; Pozzoni, Pietro

    2007-06-01

    Starting in 1998, the number of pure red-cell aplasia (PRCA) cases in patients treated with recombinant human erythropoietin (rHuEPO) increased dramatically. Most cases were observed in patients treated with epoetin alfa produced outside the United States. The peak was observed in 2002; since then, the PRCA incidence has declined. Many factors are likely to have contributed to this up-surge. The molecular structure of the various epoetins and patient characteristics do not seem to play a major role. The route of administration holds some importance, because most PRCA patients received rHuEPO subcutaneously. The peak of PRCA cases overlapped with the removal of human serum albumin from the Eprex formulation (Janssen-Pharmaceutica NV, Beerse, Belgium), for which polysorbate 80 and glycine were substituted. Polysorbate 80 may have increased the immunogenicity of Eprex by eliciting the formation of epoetin-containing micelles or by interacting with leachates released by the uncoated rubber stoppers of prefilled syringes. Compared with the previous formulation, the polysorbate 80 formulation has lower stability, making it more susceptible to stress conditions such as insufficient attention to the cold chain. This situation could facilitate protein denaturation or aggregate formation. Uncoated rubber stoppers were replaced with coated stoppers, and the cold chain was reinforced; the Eprex formulation has remained unchanged. Even though the incidence of PRCA returned to very low levels, discriminating the cause-effect relationship of a single action is difficult, given that all occurred with a similar chronology, and that PRCA develops after a relatively long exposure period. Careful observation of future trends of new PRCA cases is thus mandatory. PMID:17556324

  16. Effectiveness of two-sided UV-C treatments in inhibiting natural microflora and extending the shelf-life of minimally processed 'Red Oak Leaf' lettuce.

    PubMed

    Allende, Ana; McEvoy, James L; Luo, Yaguang; Artes, Francisco; Wang, Chien Y

    2006-05-01

    The use of UV-C radiation treatments to inhibit the microbial growth and extend the shelf-life of minimally processed 'Red Oak Leaf' lettuce was investigated. Initially, UV-C resistance of 20 bacterial strains from different genera often associated with fresh produce (Enterobacter, Erwinia, Escherichia, Leuconostoc, Pantoea, Pseudomonas, Rahnela, Salmonella, Serratia and Yersinia) were tested in vitro. Most of the bacterial strains were inhibited with the minimum dose (30 J m(-2)). Erwinia carotovora, Leuconostoc carnosum, Salmonella typhimurium, and Yersinia aldovae were the most resistant strains requiring a UV-C dose of 85 J m(-2) to completely inhibit growth. An in vivo study consisted of treating minimally processed 'Red Oak Leaf' lettuce (Lactuca sativa) with UV-C at three radiation doses (1.18, 2.37 and 7.11 kJ m(-2)) on each side of the leaves and storing the product under passive MAP conditions at 5 degrees C for up to 10 days. The gas composition inside packages varied significantly among the treatments, with CO2 concentrations positively and O2 concentrations negatively correlating with the radiation dose. All the radiation doses were effective in reducing the natural microflora of the product, although the highest doses showed the greatest microbial inhibitions. Taking into account the microbial limit set by Spanish legislation [Boletín Oficial del Estado (BOE), 2001. Normas de higiene para la elaboración, distribución y comercio de comidas preparadas, Madrid, Spain, Real Decreto 3484/2000, pp. 1435-1441], all UV-C treatments extended the shelf-life of the product. However, the 7.11 kJ m(-2) dose induced tissue softening and browning after 7 days of storage at 5 degrees C. Therefore, the use of two sided UV-C radiation, at the proper dose, is effective in reducing the natural microflora and extending the shelf-life of minimally processed 'Red Oak Leaf' lettuce. PMID:16943010

  17. Application of the differential colorimetry and polyphenolic profile to the evaluation of the chromatic quality of Tempranillo red wines elaborated in warm climate. Influence of the presence of oak wood chips during fermentation.

    PubMed

    Gordillo, Belén; Cejudo-Bastante, María Jesús; Rodríguez-Pulido, Francisco J; González-Miret, M Lourdes; Heredia, Francisco J

    2013-12-01

    The effect of adding American oak wood chips during fermentation on Tempranillo red wines elaborates in a warm climate has been studied. Our attention was focused on the tristimulus colorimetry, differential colorimetry and phenolic compounds related to wine colour. This technique was applied as an oenological alternative to the conventional winemaking for avoiding the common fall of colour of red wines elaborated in warm climates. The addition of oak wood chips promoted the colour enhancement and stabilisation, producing wines with a notably darker colour and with more bluish tonality. This fact was also related to the significantly higher content of some phenolic compounds. On the basis of the results, it could be affirmed that the addition of oak wood chips during fermentation induced visually perceptible colour changes (by the analysis of ΔEab(*), %Δ(2)L, %Δ(2)C and %Δ(2)H), mainly in a quantitative way, and also a lower percentage of diminution of colour. PMID:23870946

  18. Quantitative X-ray Diffraction (QXRD) analysis for revealing thermal transformations of red mud.

    PubMed

    Liao, Chang-Zhong; Zeng, Lingmin; Shih, Kaimin

    2015-07-01

    Red mud is a worldwide environmental problem, and many authorities are trying to find an economic solution for its beneficial application or/and safe disposal. Ceramic production is one of the potential waste-to-resource strategies for using red mud as a raw material. Before implementing such a strategy, an unambiguous understanding of the reaction behavior of red mud under thermal conditions is essential. In this study, the phase compositions and transformation processes were revealed for the Pingguo red mud (PRM) heat-treated at different sintering temperatures. Hematite, perovskite, andradite, cancrinite, kaolinite, diaspore, gibbsite and calcite phases were observed in the samples. However, unlike those red mud samples from the other regions, no TiO2 (rutile or anatase) or quartz were observed. Titanium was found to exist mainly in perovskite and andradite while the iron mainly existed in hematite and andradite. A new silico-ferrite of calcium and aluminum (SFCA) phase was found in samples treated at temperatures above 1100°C, and two possible formation pathways for SFCA were suggested. This is the first SFCA phase to be reported in thermally treated red mud, and this finding may turn PRM waste into a material resource for the iron-making industry. Titanium was found to be enriched in the perovskite phase after 1200°C thermal treatment, and this observation indicated a potential strategy for the recovery of titanium from PRM. In addition to noting these various resource recovery opportunities, this is also the first study to quantitatively summarize the reaction details of PRM phase transformations at various temperatures. PMID:25841072

  19. Antioxidant, anti-inflammatory and anticarcinogenic activities of edible red oak (Quercus spp.) infusions in rat colon carcinogenesis induced by 1,2-dimethylhydrazine.

    PubMed

    Moreno-Jimenez, Martha Rocío; Trujillo-Esquivel, Fátima; Gallegos-Corona, Marco A; Reynoso-Camacho, Rosalia; González-Laredo, Rubén Francisco; Gallegos-Infante, José Alberto; Rocha-Guzmán, Nuria Elizabeth; Ramos-Gomez, Minerva

    2015-06-01

    Red oak (Quercus spp.) leaves are traditionally used as food in Mexico, and some of their infusions have potential anticarcinogenic and anti-inflammatory effects; however, these properties have not yet been scientifically tested. The aim of this work was to explore the anti-inflammatory activity in HT-29 cells and anticarcinogenic effect in 1,2-dimethylhydrazine (DMH)-induced colon carcinogenesis of red oak infusions. Quercus infusions were prepared and administered as the sole source of drink to male Sprague-Dawley rats (1% w/v) for the entire 26-week experimental period. On week 4, rats received 8 subcutaneous injections of DMH (21 mg/kg body weight) once a week. The results showed that mean tumor (0.9 ± 0.2 vs. 2.6 ± 0.3) and multiplicity (1.2 ± 0.1 vs. 2.0 ± 0.23), and β-catenin protein level (2.2-fold) in adenocarcinomas were significantly lower in Quercus  sideroxyla-treated group compared with DMH group. By contrast, Quercus  durifolia and Quercus  eduardii infusions had no protective effect. Additionally, the experiments in HT-29 cells confirmed that Q. sideroxyla infusion effectively decreased the levels of the inflammatory markers COX-2 and IL-8 by modulating the expression of NF-κB. These results highlight some of the molecular mechanisms related to the chemopreventive effect of Q. sideroxyla infusion and its potential value as a source of bioactive compounds. PMID:25795146

  20. Stemflow and soil water recharge during rainfall in a red pine chronosequence on the Oak Ridges Moraine, southern Ontario, Canada

    NASA Astrophysics Data System (ADS)

    Buttle, J. M.; Toye, H. J.; Greenwood, W. J.; Bialkowski, R.

    2014-09-01

    Stemflow focusses water delivery to the forest floor in a relatively small area surrounding the tree bole, with the potential to enhance soil water contents and water recharge relative to more distal sites beneath the canopy. These stemflow fluxes may decrease as a given tree species ages due to changes in branch orientation and bark roughness, suggesting that the relative contribution of stemflow to water recharge near the bole will decline with time. The hypothesis that stemflow fluxes decline with tree age was tested in a chronosequence of red pine (Pinus resinosa Ait.) stands in a managed forest in southern Ontario, Canada, and stemflow contributions to soil water recharge below 1 m depth were quantified. Throughfall, stemflow and sub-canopy soil water contents (0.1 m and 1.5 m from the tree bole to 1 m depth) in stands ranging from 28 to 80 years in age were studied from late-Spring to Fall in 2012, supplemented by artificial irrigations of stemflow to examine short-term soil wetting at the two distances from the bole. The hypothesized decline in stemflow with increasing tree age was not supported, and canopy cover variations and forest management exerted a greater control on inter-stand differences in stemflow fluxes. Stemflow contributions generally resulted in greater soil water recharge below 1 m depth at 0.1 m from the tree bole compared to the 1.5 m distance. This enhanced recharge was greatest for the youngest stand and differences in recharge between the 0.1 m and 1.5 m distances from the bole were likely not significant for stands between 40 and 80 years of age. Nevertheless, the relative contribution of stemflow to soil water recharge may increase in this managed forest as red pine stands give way to a mixed hardwood-conifer forest, due to greater stemflow fluxes from hardwood species in this landscape.

  1. Volatile compounds as markers of ageing in Tempranillo red wines from La Mancha D.O. stored in oak wood barrels.

    PubMed

    Castro-Vázquez, Lucía; Alañón, M Elena; Calvo, Elena; Cejudo, M Jesús; Díaz-Maroto, M Consuelo; Pérez-Coello, M Soledad

    2011-07-29

    Solid-phase extraction cartridges (SPE)-GC/MS method was used to analyse red wines aromas. The matrix effect was studied with chemicals standard prepared in synthetic wines with water/alcohol solutions (12% ethanol, v/v) following the procedure proposed. The method offers good reproducibility since the relative standard deviations (RSD%) for the volatile compounds levels were less than 9%. This method was used to differentiate the aroma of one hundred mono-varietal young, crianza, reserva and gran reserva La Mancha D.O. wines (cv. Tempranillo) on the basis of oak barrel contact period. Samples were checked at ten time points over 36 months. Sixty important wine odorants, such as volatile phenols, vanillin derivatives, lactones, norisoprenoids, benzene compounds, esters and terpenols, can be quantitatively determined in a single run. Results showed significant quantitative differences in the volatile profiles of wines depending on the length of time in contact with wood, even in wines belonging to the same commercial category. Stepwise multiple linear regression (SMLR) was used to obtain a model that predicted the time of barrel ageing to which wines were submitted in relation with the wine volatile composition. A successful function based on eight compounds with a mean deviation of 0.37 months in the predictions, was obtained. PMID:21227438

  2. Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean.

    PubMed

    Fortunato, Antonio Emidio; Jaubert, Marianne; Enomoto, Gen; Bouly, Jean-Pierre; Raniello, Raffaella; Thaler, Michael; Malviya, Shruti; Bernardes, Juliana Silva; Rappaport, Fabrice; Gentili, Bernard; Huysman, Marie J J; Carbone, Alessandra; Bowler, Chris; d'Alcalà, Maurizio Ribera; Ikeuchi, Masahiko; Falciatore, Angela

    2016-03-01

    The absorption of visible light in aquatic environments has led to the common assumption that aquatic organisms sense and adapt to penetrative blue/green light wavelengths but show little or no response to the more attenuated red/far-red wavelengths. Here, we show that two marine diatom species, Phaeodactylum tricornutum and Thalassiosira pseudonana, possess a bona fide red/far-red light sensing phytochrome (DPH) that uses biliverdin as a chromophore and displays accentuated red-shifted absorbance peaks compared with other characterized plant and algal phytochromes. Exposure to both red and far-red light causes changes in gene expression in P. tricornutum, and the responses to far-red light disappear in DPH knockout cells, demonstrating that P. tricornutum DPH mediates far-red light signaling. The identification of DPH genes in diverse diatom species widely distributed along the water column further emphasizes the ecological significance of far-red light sensing, raising questions about the sources of far-red light. Our analyses indicate that, although far-red wavelengths from sunlight are only detectable at the ocean surface, chlorophyll fluorescence and Raman scattering can generate red/far-red photons in deeper layers. This study opens up novel perspectives on phytochrome-mediated far-red light signaling in the ocean and on the light sensing and adaptive capabilities of marine phototrophs. PMID:26941092

  3. REVEALING PROBABLE UNIVERSAL FEATURES IN THE LOWER RED GIANT BRANCH LUMINOSITY FUNCTIONS OF GALACTIC GLOBULAR CLUSTERS

    SciTech Connect

    Kravtsov, V. V.

    2009-06-15

    This paper aims at demonstrating, for the first time, very probable universal peculiarities of the evolution of stars in the lower red giant branch (RGB) of Galactic globular clusters (GCs), reflected in two corresponding dips in the luminosity functions (LFs). By relying on the database of Hubble Space Telescope photometry of GCs, we analyze the lower RGB LFs of a sample of 18 GCs in a wide metallicity range, {delta}[Fe/H] {approx} 1.9 dex. We first show that in the F555W-(F439W-F555W) color-magnitude diagrams (CMDs), the lower RGB of GCs, except for the most metal-poor of them, frequently shows an apparent 'knee'. It reveals itself as a fairly abrupt change of the RGB slope. At the same luminosity level, the RGB LFs show a feature in the form of a more or less pronounced dip. We find that the magnitude difference between the RGB base and the given feature is, on average, around {delta} F555W{sup dip} {sub base}{approx} 1.4 mag. It shows a marginal variation with metallicity, if any, comparable to the error. At the same time, the magnitude difference between the dip and the RGB bump, {delta} F555W{sup bump} {sub dip}, decreases with increasing metallicity and falls within the range 0.8 {approx}< {delta} F555W{sup bump} {sub dip} {approx}< 1.7 mag. Generalized LFs (GLFs) have been obtained for three subsamples of GCs within limited metallicity ranges and with different horizontal branch (HB) morphology. They reproduce the 'knee-related' dip that is statistically significant in two of the GLFs. This feature turns out to be more pronounced in the GLFs of GCs with either the blue or red HB morphology than with the intermediate one. The same GLFs also reveal an additional probable universal dip. It shows up below the RGB bump at {delta} F555W slightly increasing from {approx}0.3 to {approx}0.5 mag with increasing metallicity. Also, the statistical significance of this 'prebump' dip increases, on average, toward higher metallicity. Except for the well known RGB bump, no

  4. Novel Features of Eukaryotic Photosystem II Revealed by Its Crystal Structure Analysis from a Red Alga.

    PubMed

    Ago, Hideo; Adachi, Hideyuki; Umena, Yasufumi; Tashiro, Takayoshi; Kawakami, Keisuke; Kamiya, Nobuo; Tian, Lirong; Han, Guangye; Kuang, Tingyun; Liu, Zheyi; Wang, Fangjun; Zou, Hanfa; Enami, Isao; Miyano, Masashi; Shen, Jian-Ren

    2016-03-11

    Photosystem II (PSII) catalyzes light-induced water splitting, leading to the evolution of molecular oxygen indispensible for life on the earth. The crystal structure of PSII from cyanobacteria has been solved at an atomic level, but the structure of eukaryotic PSII has not been analyzed. Because eukaryotic PSII possesses additional subunits not found in cyanobacterial PSII, it is important to solve the structure of eukaryotic PSII to elucidate their detailed functions, as well as evolutionary relationships. Here we report the structure of PSII from a red alga Cyanidium caldarium at 2.76 Å resolution, which revealed the structure and interaction sites of PsbQ', a unique, fourth extrinsic protein required for stabilizing the oxygen-evolving complex in the lumenal surface of PSII. The PsbQ' subunit was found to be located underneath CP43 in the vicinity of PsbV, and its structure is characterized by a bundle of four up-down helices arranged in a similar way to those of cyanobacterial and higher plant PsbQ, although helices I and II of PsbQ' were kinked relative to its higher plant counterpart because of its interactions with CP43. Furthermore, two novel transmembrane helices were found in the red algal PSII that are not present in cyanobacterial PSII; one of these helices may correspond to PsbW found only in eukaryotic PSII. The present results represent the first crystal structure of PSII from eukaryotic oxygenic organisms, which were discussed in comparison with the structure of cyanobacterial PSII. PMID:26757821

  5. Deposition of H15NO3 vapour to white oak, red maple and loblolly pine foliage: experimental observations and a generalized model

    SciTech Connect

    Hanson, Paul J; Garten Jr, Charles T

    1992-10-01

    Nitric acid vapour enriched with {sup 15}N (H{sup 15}NO{sub 3}) was volatilized into the cuvette of an open-flow gas exchange system containing red maple (Acer rubrum L.), white oak (Quercus alba L.), or loblolly pine (Pinus taeda L.) seedling shoots to facilitate direct measurements of total foliar deposition, and subsequent assessments of the rate of HNO{sub 3} movement across the cuticle (transcuticular uptake). Total H{sup 15}NO{sub 3} vapour deposition to foliar surfaces ranged from <5 to 27 nmol m{sup -2} s{sup -1} the variability being largely accounted for by differences in HNO{sub 3} concentrations and leaf conductance. Mean whole-leaf conductance to HNO{sub 3} ranged between 0.9 and 3.4 mm s{sup -1} for hardwoods and between 6 and 34 mm s{sup -1} for loblolly pine. Of the total H{sup 15}NO{sub 3} vapour deposited to leaves, an average of 39 to 48% was immediately 'bound' into hardwood foliage whereas only 3% was bound to loblolly pine needles. This implies that rain events might extract greater amounts of HNO{sub 3}-derived nitrate in throughfall from conifer canopies as compared to hardwood canopies. Post-exposure H{sup 15}NO{sub 3} uptake rates across the leaf cuticle increased with surface nitrate concentrations, but were 1 to 2 orders of magnitude lower (O06 to 0.24 nmol m{sup -2} s{sup -1}) than total HNO{sub 3}, deposition during exposures. A generalized leaf-level model of HNO{sub 3} deposition to foliage capable of simulating deposition pathways to sorption sites on the leaf surface, and to the metabolically active leaf interior via transcuticular or stomatal pathways is formulated and suggested for use in planning future work on HNO{sub 3} deposition.

  6. Elevated intracellular Ca2+ reveals a functional membrane nucleotide pool in intact human red blood cells

    PubMed Central

    Tiffert, Teresa

    2011-01-01

    Elevated intracellular calcium generates rapid, profound, and irreversible changes in the nucleotide metabolism of human red blood cells (RBCs), triggered by the adenosine triphosphatase (ATPase) activity of the powerful plasma membrane calcium pump (PMCA). In the absence of glycolytic substrates, Ca2+-induced nucleotide changes are thought to be determined by the interaction between PMCA ATPase, adenylate kinase, and AMP-deaminase enzymes, but the extent to which this three-enzyme system can account for the Ca2+-induced effects has not been investigated in detail before. Such a study requires the formulation of a model incorporating the known kinetics of the three-enzyme system and a direct comparison between its predictions and precise measurements of the Ca2+-induced nucleotide changes, a precision not available from earlier studies. Using state-of-the-art high-performance liquid chromatography, we measured the changes in the RBC contents of ATP, ADP, AMP, and IMP during the first 35 min after ionophore-induced pump-saturating Ca2+ loads in the absence of glycolytic substrates. Comparison between measured and model-predicted changes revealed that for good fits it was necessary to assume mean ATPase Vmax values much higher than those ever measured by PMCA-mediated Ca2+ extrusion. These results suggest that the local nucleotide concentrations generated by ATPase activity at the inner membrane surface differed substantially from those measured in bulk cell extracts, supporting previous evidence for the existence of a submembrane microdomain with a distinct nucleotide metabolism. PMID:21948947

  7. Higher growth temperatures decreased net carbon assimilation and biomass accumulation of northern red oak seedlings near the southern limit of the species range.

    PubMed

    Wertin, Timothy M; McGuire, Mary Anne; Teskey, Robert O

    2011-12-01

    If an increase in temperature will limit the growth of a species, it will be in the warmest portion of the species distribution. Therefore, in this study we examined the effects of elevated temperature on net carbon assimilation and biomass production of northern red oak (Quercus rubra L.) seedlings grown near the southern limit of the species distribution. Seedlings were grown in chambers in elevated CO(2) (700 µmol mol(-1)) at three temperature conditions, ambient (tracking diurnal and seasonal variation in outdoor temperature), ambient +3 °C and ambient +6 °C, which produced mean growing season temperatures of 23, 26 and 29 °C, respectively. A group of seedlings was also grown in ambient [CO(2)] and ambient temperature as a check of the growth response to elevated [CO(2)]. Net photosynthesis and leaf respiration, photosynthetic capacity (V(cmax), J(max) and triose phosphate utilization (TPU)) and chlorophyll fluorescence, as well as seedling height, diameter and biomass, were measured during one growing season. Higher growth temperatures reduced net photosynthesis, increased respiration and reduced height, diameter and biomass production. Maximum net photosynthesis at saturating [CO(2)] and maximum rate of electron transport (J(max)) were lowest throughout the growing season in seedlings grown in the highest temperature regime. These parameters were also lower in June, but not in July or September, in seedlings grown at +3 °C above ambient, compared with those grown in ambient temperature, indicating no impairment of photosynthetic capacity with a moderate increase in air temperature. An unusual and potentially important observation was that foliar respiration did not acclimate to growth temperature, resulting in substantially higher leaf respiration at the higher growth temperatures. Lower net carbon assimilation was correlated with lower growth at higher temperatures. Total biomass at the end of the growing season decreased in direct proportion to the

  8. Solvatochromic Nile Red probes with FRET quencher reveal lipid order heterogeneity in living and apoptotic cells.

    PubMed

    Kreder, Rémy; Pyrshev, Kyrylo A; Darwich, Zeinab; Kucherak, Oleksandr A; Mély, Yves; Klymchenko, Andrey S

    2015-06-19

    Detecting and imaging lipid microdomains (rafts) in cell membranes remain a challenge despite intensive research in the field. Two types of fluorescent probes are used for this purpose: one specifically labels a given phase (liquid ordered, Lo, or liquid disordered, Ld), while the other, being environment-sensitive (solvatochromic), stains the two phases in different emission colors. Here, we combined the two approaches by designing a phase-sensitive probe of the Ld phase and a quencher of the Ld phase. The former is an analogue of the recently developed Nile Red-based probe NR12S, bearing a bulky hydrophobic chain (bNR10S), while the latter is based on Black Hole Quencher-2 designed as bNR10S (bQ10S). Fluorescence spectroscopy of large unilamellar vesicles and microscopy of giant vesicles showed that the bNR10S probe can partition specifically into the Ld phase, while bQ10S can specifically quench the NR12S probe in the Ld phase so that only its fraction in the Lo phase remains fluorescent. Thus, the toolkit of two probes with quencher can specifically target Ld and Lo phases and identify their lipid order from the emission color. Application of this toolkit in living cells (HeLa, CHO, and 293T cell lines) revealed heterogeneity in the cell plasma membranes, observed as distinct probe environments close to the Lo and Ld phases of model membranes. In HeLa cells undergoing apoptosis, our toolkit showed the formation of separate domains of the Ld-like phase in the form of blebs. The developed tools open new possibilities in lipid raft research. PMID:25710589

  9. The Egyptian Red Sea coastal microbiome: A study revealing differential microbial responses to diverse anthropogenic pollutants.

    PubMed

    Mustafa, Ghada A; Abd-Elgawad, Amr; Ouf, Amged; Siam, Rania

    2016-07-01

    The Red Sea is considered one of the youngest oceanic systems, with unique physical, geochemical and biological characteristics. Tourism, industrialization, extensive fishing, oil processing and shipping are extensive sources of pollution in the Red Sea. We analyzed the geochemical characteristics and microbial community of sediments along the Egyptian coast of the Red Sea. Our sites mainly included 1) four ports used for shipping aluminum, ilmenite and phosphate; 2) a site previously reported to have suffered extensive oil spills; and 3) a site impacted by tourism. Two major datasets for the sediment of ten Red Sea coastal sites were generated; i) a chemical dataset included measurements of carbon, hydrogen, nitrogen and sulfur, metals and selected semi-volatile oil; and ii) a 16S rRNA Pyrotags bacterial metagenomic dataset. Based on the taxonomic assignments of the 16S rRNA Pyrotags to major bacterial groups, we report 30 taxa constituting an Egyptian Red Sea Coastal Microbiome. Bacteria that degrade hydrocarbons were predominant in the majority of the sites, particularly in two ports where they reached up to 76% of the total identified genera. In contrast, sulfate-reducing and sulfate-oxidizing bacteria dominated two lakes at the expense of other hydrocarbon metabolizers. Despite the reported "Egyptian Red Sea Coastal Microbiome," sites with similar anthropogenic pollutants showed unique microbial community abundances. This suggests that the abundance of a specific bacterial community is an evolutionary mechanism induced in response to selected anthropogenic pollutants. PMID:27179234

  10. High resolution mass spectrometry imaging reveals the occurrence of phenylphenalenone-type compounds in red paracytic stomata and red epidermis tissue of Musa acuminata ssp. zebrina cv. 'Rowe Red'.

    PubMed

    Hölscher, Dirk; Fuchser, Jens; Knop, Katrin; Menezes, Riya C; Buerkert, Andreas; Svatoš, Aleš; Schubert, Ulrich S; Schneider, Bernd

    2015-08-01

    The banana epidermis and in particular their stomata are conducive sites for the penetration of pathogenic fungi which can severely limit global banana production. The red pseudostem of the ornamental banana Musa acuminata ssp. zebrina cv. 'Rowe Red' was used to study the chemical constituents of the epidermal cell layer using matrix-free laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometric imaging (LDI-FT-ICR-MSI). The high resolution of this technique allowed phenylphenalenone-type compounds to be located in single plant cells. Some of these secondary metabolites were identified as constitutive compounds and found in specialized epidermal cells in banana pseudostem tissue. Especially the red paracytic stomata revealed higher signal intensities of certain phenylphenalenones than normal epidermis cells. The ease of detection of polycyclic aromatic compounds on the cellular level is discussed with regard to future investigations of plant-pathogen interactions. PMID:26004822

  11. Genetic footprints reveal geographic patterns of expansion in Fennoscandian red foxes.

    PubMed

    Norén, Karin; Statham, Mark J; Ågren, Erik O; Isomursu, Marja; Flagstad, Øystein; Eide, Nina E; Berg, Thomas Bjørneboe G; Bech-Sanderhoff, Lene; Sacks, Benjamin N

    2015-09-01

    Population expansions of boreal species are among the most substantial ecological consequences of climate change, potentially transforming both structure and processes of northern ecosystems. Despite their importance, little is known about expansion dynamics of boreal species. Red foxes (Vulpes vulpes) are forecasted to become a keystone species in northern Europe, a process stemming from population expansions that began in the 19th century. To identify the relative roles of geographic and demographic factors and the sources of northern European red fox population expansion, we genotyped 21 microsatellite loci in modern and historical (1835-1941) Fennoscandian red foxes. Using Bayesian clustering and Bayesian inference of migration rates, we identified high connectivity and asymmetric migration rates across the region, consistent with source-sink dynamics, whereby more recently colonized sampling regions received immigrants from multiple sources. There were no clear clines in allele frequency or genetic diversity as would be expected from a unidirectional range expansion from south to north. Instead, migration inferences, demographic models and comparison to historical red fox genotypes suggested that the population expansion of the red fox is a consequence of dispersal from multiple sources, as well as in situ demographic growth. Together, these findings provide a rare glimpse into the anatomy of a boreal range expansion and enable informed predictions about future changes in boreal communities. PMID:26058388

  12. Population differentiation in the red-legged kittiwake (Rissa brevirostris) as revealed by mitochondrial DNA

    USGS Publications Warehouse

    Patirana, A.; Hatch, Shyla A.; Friesen, V.L.

    2002-01-01

    Population decline in red-legged kittiwakes (Rissa brevirostris) over recent decades has necessitated the collection of information on the distribution of genetic variation within and among colonies for implementation of suitable management policies. Here we present a preliminary study of the extent of genetic structuring and gene flow among the three principal breeding locations of red-legged kittiwakes using the hypervariable Domain I of the mitochondrial control region. Genetic variation was high relative to other species of seabirds, and was similar among locations. Analysis of molecular variance indicated that population genetic structure was statistically significant, and nested clade analysis suggested that kittiwakes breeding on Bering Island maybe genetically isolated from those elsewhere. However, phylogeographic structure was weak. Although this analysis involved only a single locus and a small number of samples, it suggests that red-legged kittiwakes probably constitute a single evolutionary significant unit; the possibility that they constitute two management units requires further investigation.

  13. A novel phototropic response to red light is revealed in microgravity.

    PubMed

    Millar, Katherine D L; Kumar, Prem; Correll, Melanie J; Mullen, Jack L; Hangarter, Roger P; Edelmann, Richard E; Kiss, John Z

    2010-05-01

    The aim of this study was to investigate phototropism in plants grown in microgravity conditions without the complications of a 1-g environment. Experiments performed on the International Space Station (ISS) were used to explore the mechanisms of both blue-light- and red-light-induced phototropism in plants. This project utilized the European Modular Cultivation System (EMCS), which has environmental controls for plant growth as well as centrifuges for gravity treatments used as a 1-g control. Images captured from video tapes were used to analyze the growth, development, and curvature of Arabidopsis thaliana plants that developed from seed in space. A novel positive phototropic response to red light was observed in hypocotyls of seedlings that developed in microgravity. This response was not apparent in seedlings grown on Earth or in the 1-g control during the space flight. In addition, blue-light-based phototropism had a greater response in microgravity compared with the 1-g control. Although flowering plants are generally thought to lack red light phototropism, our data suggest that at least some flowering plants may have retained a red light sensory system for phototropism. Thus, this discovery may have important implications for understanding the evolution of light sensory systems in plants. PMID:20298479

  14. Spatial masking does not reveal mechanisms selective to combined luminance and red-green color.

    PubMed

    Stromeyer, C F; Thabet, R; Chaparro, A; Kronauer, R E

    1999-06-01

    Detection thresholds plotted in the L and M cone-contrast plane have shown that there are two primary detection mechanisms, a red-green hue mechanism and a light-dark luminance mechanism. However, previous masking results suggest there may be additional mechanisms, responsive to combined features like bright and red or dark and green. We measured detection thresholds for a 1.2 c deg-1 sine-wave grating in the presence of a spatially matched mask grating which was either stationary, dynamically jittered or flickered. The stimuli could be set to any direction in the L,M plane. The appearance of selectivity for combined hue and luminance arose only in conditions where adding the test to the mask modified the spatial phase offset between the luminance and red-green stimulus components. Sensitivity was very high for detecting this spatial phase offset. When this extra cue was eliminated, masking contours in the L,M plane could be largely described by the classical red-green and luminance mechanisms. PMID:10343793

  15. Segregations for Onion-Bulb Colors Reveal that Red is Controlled by at Least Three Loci

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Onion seed-coat color is controlled by one locus (B) and bulb color by at least five major loci. White bulbs are conditioned by a dominant allele at the I locus or recessive alleles at the C locus. Colored bulbs (pink, red, yellow, or chartreuse) are homozygous recessive at the I locus and carry a...

  16. Comparative study reveals better far-red fluorescent protein for whole body imaging

    PubMed Central

    Luker, K.E.; Pata, P.; Shemiakina, I.I.; Pereverzeva, A.; Stacer, A.C.; Shcherbo, D.S.; Pletnev, V.Z.; Skolnaja, M.; Lukyanov, K.A.; Luker, G.D.; Pata, I.; Chudakov, D.M.

    2015-01-01

    Genetically encoded far-red and near-infrared fluorescent proteins enable efficient imaging in studies of tumorigenesis, embryogenesis, and inflammation in model animals. Here we report comparative testing of available GFP-like far-red fluorescent proteins along with a modified protein, named Katushka2S, and near-infrared bacterial phytochrome-based markers. We compare fluorescence signal and signal-to-noise ratio at various excitation wavelength and emission filter combinations using transiently transfected cell implants in mice, providing a basis for rational choice of optimal marker(s) for in vivo imaging studies. We demonstrate that the signals of various far-red fluorescent proteins can be spectrally unmixed based on different signal-to-noise ratios in different channels, providing the straightforward possibility of multiplexed imaging with standard equipment. Katushka2S produced the brightest and fastest maturing fluorescence in all experimental setups. At the same time, signal-to-noise ratios for Katushka2S and near-infrared bacterial phytochrome, iRFP720 were comparable in their optimal channels. Distinct spectral and genetic characteristics suggest this pair of a far-red and a near-infrared fluorescent protein as an optimal combination for dual color, whole body imaging studies in model animals. PMID:26035795

  17. Transcriptome Analysis Reveals that Red and Blue Light Regulate Growth and Phytohormone Metabolism in Norway Spruce [Picea abies (L.) Karst.

    PubMed Central

    OuYang, Fangqun; Mao, Jian-Feng; Wang, Junhui; Zhang, Shougong; Li, Yue

    2015-01-01

    The mechanisms by which different light spectra regulate plant shoot elongation vary, and phytohormones respond differently to such spectrum-associated regulatory effects. Light supplementation can effectively control seedling growth in Norway spruce. However, knowledge of the effective spectrum for promoting growth and phytohormone metabolism in this species is lacking. In this study, 3-year-old Norway spruce clones were illuminated for 12 h after sunset under blue or red light-emitting diode (LED) light for 90 d, and stem increments and other growth traits were determined. Endogenous hormone levels and transcriptome differences in the current needles were assessed to identify genes related to the red and blue light regulatory responses. The results showed that the stem increment and gibberellin (GA) levels of the seedlings illuminated by red light were 8.6% and 29.0% higher, respectively, than those of the seedlings illuminated by blue light. The indoleacetic acid (IAA) level of the seedlings illuminated by red light was 54.6% lower than that of the seedlings illuminated by blue light, and there were no significant differences in abscisic acid (ABA) or zeatin riboside [ZR] between the two groups of seedlings. The transcriptome results revealed 58,736,166 and 60,555,192 clean reads for the blue-light- and red-light-illuminated samples, respectively. Illumina sequencing revealed 21,923 unigenes, and 2744 (approximately 93.8%) out of 2926 differentially expressed genes (DEGs) were found to be upregulated under blue light. The main KEGG classifications of the DEGs were metabolic pathway (29%), biosynthesis of secondary metabolites (20.49%) and hormone signal transduction (8.39%). With regard to hormone signal transduction, AUXIN-RESISTANT1 (AUX1), AUX/IAA genes, auxin-inducible genes, and early auxin-responsive genes [(auxin response factor (ARF) and small auxin-up RNA (SAUR)] were all upregulated under blue light compared with red light, which might have yielded the

  18. Transcriptome Analysis Reveals that Red and Blue Light Regulate Growth and Phytohormone Metabolism in Norway Spruce [Picea abies (L.) Karst].

    PubMed

    OuYang, Fangqun; Mao, Jian-Feng; Wang, Junhui; Zhang, Shougong; Li, Yue

    2015-01-01

    The mechanisms by which different light spectra regulate plant shoot elongation vary, and phytohormones respond differently to such spectrum-associated regulatory effects. Light supplementation can effectively control seedling growth in Norway spruce. However, knowledge of the effective spectrum for promoting growth and phytohormone metabolism in this species is lacking. In this study, 3-year-old Norway spruce clones were illuminated for 12 h after sunset under blue or red light-emitting diode (LED) light for 90 d, and stem increments and other growth traits were determined. Endogenous hormone levels and transcriptome differences in the current needles were assessed to identify genes related to the red and blue light regulatory responses. The results showed that the stem increment and gibberellin (GA) levels of the seedlings illuminated by red light were 8.6% and 29.0% higher, respectively, than those of the seedlings illuminated by blue light. The indoleacetic acid (IAA) level of the seedlings illuminated by red light was 54.6% lower than that of the seedlings illuminated by blue light, and there were no significant differences in abscisic acid (ABA) or zeatin riboside [ZR] between the two groups of seedlings. The transcriptome results revealed 58,736,166 and 60,555,192 clean reads for the blue-light- and red-light-illuminated samples, respectively. Illumina sequencing revealed 21,923 unigenes, and 2744 (approximately 93.8%) out of 2926 differentially expressed genes (DEGs) were found to be upregulated under blue light. The main KEGG classifications of the DEGs were metabolic pathway (29%), biosynthesis of secondary metabolites (20.49%) and hormone signal transduction (8.39%). With regard to hormone signal transduction, AUXIN-RESISTANT1 (AUX1), AUX/IAA genes, auxin-inducible genes, and early auxin-responsive genes [(auxin response factor (ARF) and small auxin-up RNA (SAUR)] were all upregulated under blue light compared with red light, which might have yielded the

  19. Asteroseismology can reveal strong internal magnetic fields in red giant stars.

    PubMed

    Fuller, Jim; Cantiello, Matteo; Stello, Dennis; Garcia, Rafael A; Bildsten, Lars

    2015-10-23

    Internal stellar magnetic fields are inaccessible to direct observations, and little is known about their amplitude, geometry, and evolution. We demonstrate that strong magnetic fields in the cores of red giant stars can be identified with asteroseismology. The fields can manifest themselves via depressed dipole stellar oscillation modes, arising from a magnetic greenhouse effect that scatters and traps oscillation-mode energy within the core of the star. The Kepler satellite has observed a few dozen red giants with depressed dipole modes, which we interpret as stars with strongly magnetized cores. We find that field strengths larger than ~10(5) gauss may produce the observed depression, and in one case we infer a minimum core field strength of ≈10(7) gauss. PMID:26494754

  20. Revealing the Complex Dynamics of the Atmospheres of Red Supergiants with the Very Large Telescope Interferometer

    NASA Astrophysics Data System (ADS)

    Ohnaka, K.; Weigelt, G.; Hofmann, K.-H.; Schertl, D.

    2015-12-01

    Massive stars lose a significant fraction of their initial mass when they evolve to red supergiants before they end their life in supernova explosions. The mass loss greatly affects their final fate. However, the mass loss from these dying supergiants is not yet understood well. Here we present our efforts to spatially resolve the dynamics of the atmospheres of red supergiants with the Very Large Telescope Interferometer (VLTI) and the AMBER instrument to clarify the physical mechanism behind the mass loss. The VLTI/AMBER's combination of milliarcsecond spatial resolution and high spectral resolution allows us to spatially resolve stellar atmospheres and extract the dynamical information at each position over the star and the atmosphere — just like observations of the Sun.

  1. Microsatellite analysis reveals genetically distinct populations of red pine (Pinus resinosa, Pinaceae).

    PubMed

    Boys, Jacquelyn; Cherry, Marilyn; Dayanandan, Selvadurai

    2005-05-01

    Red pine (Pinus resinosa Ait.) is an ecologically and economically important forest tree species of northeastern North America and is considered one of the most genetically depauperate conifer species in the region. We have isolated and characterized 13 nuclear microsatellite loci by screening a partial genomic library with di-, tri-, and tetranucleotide repeat oligonucleotide probes. In an analysis of over 500 individuals representing 17 red pine populations from Manitoba through Newfoundland, five polymorphic microsatellite loci with an average of nine alleles per locus were identified. The mean expected and observed heterozygosity values were 0.508 and 0.185, respectively. Significant departures from Hardy-Weinberg equilibrium with excess homozygosity indicating high levels of inbreeding were evident in all populations studied. The population differentiation was high with 28-35% of genetic variation partitioned among populations. The genetic distance analysis showed that three northeastern (two Newfoundland and one New Brunswick) populations are genetically distinct from the remaining populations. The coalescence-based analysis suggests that "northeastern" and "main" populations likely became isolated during the most recent Pleistocene glacial period, and severe population bottlenecks may have led to the evolution of a highly selfing mating system in red pine. PMID:21652464

  2. Better red than dead: carotenoid-based mouth coloration reveals infection in barn swallow nestlings.

    PubMed Central

    Saino, N; Ninni, P; Calza, S; Martinelli, R; De Bernardi, F; Møller, A P

    2000-01-01

    Nestling birds solicit food from their parents by displaying their open brightly coloured gapes. Carotenoids affect gape colour, but also play a central role in immunostimulation. Therefore, we hypothesize that, by differentially allocating resources to nestlings with more brightly coloured gapes, parents favour healthy offspring which are able to allocate carotenoids to gape coloration without compromising their immune defence. We demonstrated that, in the barn swallow Hirundo rustica, (i) parents differentially allocate food to nestlings with an experimentally brighter red gape, (ii) nestlings challenged with a novel antigen (sheep red blood cells, SRBCs) have less bright gape colour than their control siblings, (iii) nestlings challenged with SRBCs but also provided with the principal circulating carotenoid (lutein) have more brightly coloured red gapes than their challenged but unsupplemented siblings and (iv) the gape colour of nestlings challenged with SRBCs and provisioned with lutein exceeds that of siblings that were unchallenged. This suggests that parents may favour nestlings with superior health by preferentially feeding offspring with the brightest gapes. PMID:10670953

  3. Equilibrium physics breakdown reveals the active nature of red blood cell flickering

    NASA Astrophysics Data System (ADS)

    Turlier, Herve; Fedosov, Dmitry; Auth, Thorsten; Gov, Nir S.; Sykes, Cecile; Joanny, Jean-Francois; Gompper, Gerhard; Betz, Timo

    2015-03-01

    Red blood cell membrane flickering stimulated an abundant biological, biophysical and biochemical literature over the past 50 years. While the phenomenon has been interpreted as thermal fluctuations of the cell membrane, recent results suggest the involvement of metabolic processes. However, to date there is no direct and conclusive evidence that an active force drives membrane flickering. By comparing membrane undulations and active microrheology measurements on single human erythrocytes, we show that flickering is partly driven by an active metabolic process, as it does not satisfy the equilibrium fluctuation-dissipation relation on timescales slower than 100ms. Analytical and numerical models of the red blood cell reproduce experimental results. The analytical model assumes that membrane activity results from reversible binding of the elastic spectrin network to the lipid bilayer and predicts active fluctuations to increase with local curvature and extensional prestress in the cytoskeleton. Our mean-field calculation shows that the strength and kinetics of the binding activity regulates thereupon both passive and active mechanical properties of the red blood cell. Numerical simulations explore other possible origins of active forces on the membrane and predict coherent timescales for the molecular underlying metabolic processes.

  4. Fast core rotation in red-giant stars as revealed by gravity-dominated mixed modes.

    PubMed

    Beck, Paul G; Montalban, Josefina; Kallinger, Thomas; De Ridder, Joris; Aerts, Conny; García, Rafael A; Hekker, Saskia; Dupret, Marc-Antoine; Mosser, Benoit; Eggenberger, Patrick; Stello, Dennis; Elsworth, Yvonne; Frandsen, Søren; Carrier, Fabien; Hillen, Michel; Gruberbauer, Michael; Christensen-Dalsgaard, Jørgen; Miglio, Andrea; Valentini, Marica; Bedding, Timothy R; Kjeldsen, Hans; Girouard, Forrest R; Hall, Jennifer R; Ibrahim, Khadeejah A

    2012-01-01

    When the core hydrogen is exhausted during stellar evolution, the central region of a star contracts and the outer envelope expands and cools, giving rise to a red giant. Convection takes place over much of the star's radius. Conservation of angular momentum requires that the cores of these stars rotate faster than their envelopes; indirect evidence supports this. Information about the angular-momentum distribution is inaccessible to direct observations, but it can be extracted from the effect of rotation on oscillation modes that probe the stellar interior. Here we report an increasing rotation rate from the surface of the star to the stellar core in the interiors of red giants, obtained using the rotational frequency splitting of recently detected 'mixed modes'. By comparison with theoretical stellar models, we conclude that the core must rotate at least ten times faster than the surface. This observational result confirms the theoretical prediction of a steep gradient in the rotation profile towards the deep stellar interior. PMID:22158105

  5. Bispectral index reveals death-feigning behavior in a red kite (Milvus milvus).

    PubMed

    Martin-Jurado, Olga; Simova-Curd, Stefka; Bettschart-Wolfensberger, Regula; Hatt, Jean-Michel

    2011-06-01

    Red kites (Milvus milvus) are birds of prey known to feign death in the presence of humans. An adult wild red kite was anesthetized with isoflurane for coelioscopy. During surgery, heart rate and respiratory rate ranged from 240 to 260 beats per minute and from 16 to 28 breaths rates per minute, respectively. Pupil and corneal reflexes remained present, and body temperature was maintained at 40.4 degrees C (104.7 degrees F). Suppression ratio was 0 during the anesthetic episode. The bispectral index was 44 immediately after intubation, ranged from 44 to 57 during maintenance of anesthesia, and was 59 at the moment of extubation. The index increased to 85 while the kite remained immobile, which was suggestive of feigning death in sternal recumbency. Once the bird was perched upright, it immediately kept the upright position, which confirmed the correspondence of the bispectral index value (85) with a fully conscious patient. Although behavioral or cardiorespiratory variables remained unchanged, the degree of hypnosis was indicated by the bispectral index, which anticipated a possible sudden awakening episode of this bird. PMID:21877451

  6. Comprehensive Red List Assessment Reveals Exceptionally High Extinction Risk to Madagascar Palms

    PubMed Central

    Rakotoarinivo, Mijoro; Dransfield, John; Bachman, Steven P.; Moat, Justin; Baker, William J.

    2014-01-01

    The establishment of baseline IUCN Red List assessments for plants is a crucial step in conservation planning. Nowhere is this more important than in biodiversity hotspots that are subject to significant anthropogenic pressures, such as Madagascar. Here, all Madagascar palm species are assessed using the IUCN Red List categories and criteria, version 3.1. Our results indicate that 83% of the 192 endemic species are threatened, nearly four times the proportion estimated for plants globally and exceeding estimates for all other comprehensively evaluated plant groups in Madagascar. Compared with a previous assessment in 1995, the number of Endangered and Critically Endangered species has substantially increased, due to the discovery of 28 new species since 1995, most of which are highly threatened. The conservation status of most species included in both the 1995 and the current assessments has not changed. Where change occurred, more species have moved to lower threat categories than to higher categories, because of improved knowledge of species and their distributions, rather than a decrease in extinction risk. However, some cases of genuine deterioration in conservation status were also identified. Palms in Madagascar are primarily threatened by habitat loss due to agriculture and biological resource use through direct exploitation or collateral damage. The recent extension of Madagascar’s protected area network is highly beneficial for palms, substantially increasing the number of threatened species populations included within reserves. Notably, three of the eight most important protected areas for palms are newly designated. However, 28 threatened and data deficient species are not protected by the expanded network, including some Critically Endangered species. Moreover, many species occurring in protected areas are still threatened, indicating that threatening processes persist even in reserves. Definitive implementation of the new protected areas combined

  7. THE NATURE OF EXTREMELY RED H - [4.5] > 4 GALAXIES REVEALED WITH SEDS AND CANDELS

    SciTech Connect

    Caputi, K. I.; Dunlop, J. S.; McLure, R. J.; Cirasuolo, M.; Huang, J.-S.; Fazio, G. G.; Ashby, M. L. N.; Castellano, M.; Fontana, A.; Almaini, O.; Bell, E. F.; Dickinson, M.; Donley, J. L.; Ferguson, H. C.; Grogin, N. A.; Koekemoer, A. M.; Faber, S. M.; Kocevski, D. D.; Koo, D. C.; and others

    2012-05-01

    We have analyzed a sample of 25 extremely red H - [4.5] > 4 galaxies, selected using 4.5 {mu}m data from the Spitzer SEDS survey and deep H-band data from the Hubble Space Telescope CANDELS survey, over {approx}180 arcmin{sup 2} of the UKIDSS Ultra-Deep Survey field. Our aim is to investigate the nature of this rare population of mid-infrared (mid-IR) sources that display such extreme near-to-mid-IR colors. Using up to 17-band photometry (U through 8.0 {mu}m), we have studied in detail their spectral energy distributions, including possible degeneracies in the photometric redshift/internal extinction (z{sub phot}-A{sub V} ) plane. Our sample appears to include sources of very different nature. Between 45% and 75% of them are dust-obscured, massive galaxies at 3 < z{sub phot} < 5. All of the 24 {mu}m detected sources in our sample are in this category. Two of these have S(24 {mu}m)>300 {mu}Jy, which at 3 < z{sub phot} < 5 suggests that they probably host a dust-obscured active galactic nucleus. Our sample also contains four highly obscured (A{sub V} > 5) sources at z{sub phot} < 1. Finally, we analyze in detail two z{sub phot} {approx} 6 galaxy candidates, and discuss their plausibility and implications. Overall, our red galaxy sample contains the tip of the iceberg of a larger population of z > 3 galaxies to be discovered with the future James Webb Space Telescope.

  8. Comprehensive Red List assessment reveals exceptionally high extinction risk to Madagascar palms.

    PubMed

    Rakotoarinivo, Mijoro; Dransfield, John; Bachman, Steven P; Moat, Justin; Baker, William J

    2014-01-01

    The establishment of baseline IUCN Red List assessments for plants is a crucial step in conservation planning. Nowhere is this more important than in biodiversity hotspots that are subject to significant anthropogenic pressures, such as Madagascar. Here, all Madagascar palm species are assessed using the IUCN Red List categories and criteria, version 3.1. Our results indicate that 83% of the 192 endemic species are threatened, nearly four times the proportion estimated for plants globally and exceeding estimates for all other comprehensively evaluated plant groups in Madagascar. Compared with a previous assessment in 1995, the number of Endangered and Critically Endangered species has substantially increased, due to the discovery of 28 new species since 1995, most of which are highly threatened. The conservation status of most species included in both the 1995 and the current assessments has not changed. Where change occurred, more species have moved to lower threat categories than to higher categories, because of improved knowledge of species and their distributions, rather than a decrease in extinction risk. However, some cases of genuine deterioration in conservation status were also identified. Palms in Madagascar are primarily threatened by habitat loss due to agriculture and biological resource use through direct exploitation or collateral damage. The recent extension of Madagascar's protected area network is highly beneficial for palms, substantially increasing the number of threatened species populations included within reserves. Notably, three of the eight most important protected areas for palms are newly designated. However, 28 threatened and data deficient species are not protected by the expanded network, including some Critically Endangered species. Moreover, many species occurring in protected areas are still threatened, indicating that threatening processes persist even in reserves. Definitive implementation of the new protected areas combined with

  9. Systematic trend of water vapour absorption in red giant atmospheres revealed by high resolution TEXES 12 μm spectra

    NASA Astrophysics Data System (ADS)

    Ryde, N.; Lambert, J.; Farzone, M.; Richter, M. J.; Josselin, E.; Harper, G. M.; Eriksson, K.; Greathouse, T. K.

    2015-01-01

    line-forming regions, are several hundred Kelvin lower than expected from a classical photospheric model. Conclusions: All stars in our sample show several photospheric features in their 12 μm spectra, which can be modelled with a classical model photosphere. However, in all stars showing water-vapour lines (stars cooler than ~4300 K), the water lines are found to be much deeper than expected. The line ratios of these pure-rotational lines reveal low excitation temperatures. This could either be due to lower temperatures than expected in the outer regions of the photospheres caused by for example extra cooling, or due to non-LTE level populations, affecting the source function and line opacities, but this needs further investigation. We have demonstrated that these diagnostically interesting water lines are a general feature of red giants across spectral types, and we argue for a general explanation of their formation rather than explanations requiring specific properties, such as dust. Since the water lines are neither weak (filled in by emission) nor do they appear in emission, as predicted by LTE MOLsphere models in their simplest forms, the evidence of the existence of such large optically-thick, molecular spheres enshrouding the stars is weakened. It is still a challenge to find a unifying picture of the outer regions of the atmospheres of red giants, but we have presented new empirical evidence that needs to be taken into account and explained in any model of these regions. Table 4 is available in electronic form at http://www.aanda.org

  10. Transcriptome Analysis of Red Swamp Crawfish Procambarus clarkii Reveals Genes Involved in Gonadal Development

    PubMed Central

    Jiang, Hucheng; Xing, Zhijun; Lu, Wei; Qian, Zhaojun; Yu, Hongwei; Li, Jiale

    2014-01-01

    Background The red swamp crawfish, Procambarus clarkii, has become one of the most economically important cultured species in China. Currently, little is known about the gonadal development of this species. Isolation and characterization of genes are an initial step towards understanding gonadal development of P. clarkii. Results Using the 454 pyrosequencing technology, we obtained a total of 1,134,993 high quality sequence reads from the crawfish testis and ovary libraries. We aimed to identify different genes with a potential role in gonad development. The assembly formed into 22,652 isotigs, distributed by GO analysis across 55 categories in the three ontologies, ‘molecular function’, ‘cellular component’, and ‘biological processes’. Comparative transcript analysis showed that 1,720 isotigs in the ovary were up-regulated and 2138 isotigs were down-regulated. Several gonad development related genes, such as vitellogenin, cyclin B, cyclin-dependent kinases 2, Dmc1 and ubiquitin were identified. Quantitative real-time PCR verified the expression profiles of 14 differentially expressed genes, and confirmed the reliability of the 454 pyrosequencing. Conclusions Our findings provide an archive for future research on gonadal development at a molecular level in P. clarkii and other crustacean. This data will be helpful to develop new ideas for artificial regulation of the reproductive process in crawfish aquaculture. PMID:25118947

  11. Extracellular DNA amplicon sequencing reveals high levels of benthic eukaryotic diversity in the central Red Sea.

    PubMed

    Pearman, John K; Irigoien, Xabier; Carvalho, Susana

    2016-04-01

    The present study aims to characterize the benthic eukaryotic biodiversity patterns at a coarse taxonomic level in three areas of the central Red Sea (a lagoon, an offshore area in Thuwal and a shallow coastal area near Jeddah) based on extracellular DNA. High-throughput amplicon sequencing targeting the V9 region of the 18S rRNA gene was undertaken for 32 sediment samples. High levels of alpha-diversity were detected with 16,089 operational taxonomic units (OTUs) being identified. The majority of the OTUs were assigned to Metazoa (29.2%), Alveolata (22.4%) and Stramenopiles (17.8%). Stramenopiles (Diatomea) and Alveolata (Ciliophora) were frequent in a lagoon and in shallower coastal stations, whereas metazoans (Arthropoda: Maxillopoda) were dominant in deeper offshore stations. Only 24.6% of total OTUs were shared among all areas. Beta-diversity was generally lower between the lagoon and Jeddah (nearshore) than between either of those and the offshore area, suggesting a nearshore-offshore biodiversity gradient. The current approach allowed for a broad-range of benthic eukaryotic biodiversity to be analysed with significantly less labour than would be required by other traditional taxonomic approaches. Our findings suggest that next generation sequencing techniques have the potential to provide a fast and standardised screening of benthic biodiversity at large spatial and temporal scales. PMID:26525270

  12. Equilibrium physics breakdown reveals the active nature of red blood cell flickering

    NASA Astrophysics Data System (ADS)

    Turlier, H.; Fedosov, D. A.; Audoly, B.; Auth, T.; Gov, N. S.; Sykes, C.; Joanny, J.-F.; Gompper, G.; Betz, T.

    2016-05-01

    Red blood cells, or erythrocytes, are seen to flicker under optical microscopy, a phenomenon initially described as thermal fluctuations of the cell membrane. But recent studies have suggested the involvement of non-equilibrium processes, without definitively ruling out equilibrium interpretations. Using active and passive microrheology to directly compare the membrane response and fluctuations on single erythrocytes, we report here a violation of the fluctuation-dissipation relation, which is a direct demonstration of the non-equilibrium nature of flickering. With an analytical model of the composite erythrocyte membrane and realistic stochastic simulations, we show that several molecular mechanisms may explain the active fluctuations, and we predict their kinetics. We demonstrate that tangential metabolic activity in the network formed by spectrin, a cytoskeletal protein, can generate curvature-mediated active membrane motions. We also show that other active membrane processes represented by direct normal force dipoles may explain the observed membrane activity. Our findings provide solid experimental and theoretical frameworks for future investigations of the origin and function of active motion in cells.

  13. Spatial and Species Variations in Bacterial Communities Associated with Corals from the Red Sea as Revealed by Pyrosequencing

    PubMed Central

    Lee, On On; Yang, Jiangke; Bougouffa, Salim; Wang, Yong; Batang, Zenon; Tian, Renmao; Al-Suwailem, Abdulaziz

    2012-01-01

    Microbial associations with corals are common and are most likely symbiotic, although their diversity and relationships with environmental factors and host species remain unclear. In this study, we adopted a 16S rRNA gene tag-pyrosequencing technique to investigate the bacterial communities associated with three stony Scleractinea and two soft Octocorallia corals from three locations in the Red Sea. Our results revealed highly diverse bacterial communities in the Red Sea corals, with more than 600 ribotypes detected and up to 1,000 species estimated from a single coral species. Altogether, 21 bacterial phyla were recovered from the corals, of which Gammaproteobacteria was the most dominant group, and Chloroflexi, Chlamydiae, and the candidate phylum WS3 were reported in corals for the first time. The associated bacterial communities varied greatly with location, where environmental conditions differed significantly. Corals from disturbed areas appeared to share more similar bacterial communities, but larger variations in community structures were observed between different coral species from pristine waters. Ordination methods identified salinity and depth as the most influential parameters affecting the abundance of Vibrio, Pseudoalteromonas, Serratia, Stenotrophomonas, Pseudomonas, and Achromobacter in the corals. On the other hand, bacteria such as Chloracidobacterium and Endozoicomonas were more sensitive to the coral species, suggesting that the host species type may be influential in the associated bacterial community, as well. The combined influences of the coral host and environmental factors on the associated microbial communities are discussed. This study represents the first comparative study using tag-pyrosequencing technology to investigate the bacterial communities in Red Sea corals. PMID:22865078

  14. Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean[OPEN

    PubMed Central

    Enomoto, Gen; Bouly, Jean-Pierre; Thaler, Michael; Malviya, Shruti; Bernardes, Juliana Silva; Rappaport, Fabrice; Gentili, Bernard; Huysman, Marie J.J.; Carbone, Alessandra; Bowler, Chris; Ikeuchi, Masahiko; Falciatore, Angela

    2016-01-01

    The absorption of visible light in aquatic environments has led to the common assumption that aquatic organisms sense and adapt to penetrative blue/green light wavelengths but show little or no response to the more attenuated red/far-red wavelengths. Here, we show that two marine diatom species, Phaeodactylum tricornutum and Thalassiosira pseudonana, possess a bona fide red/far-red light sensing phytochrome (DPH) that uses biliverdin as a chromophore and displays accentuated red-shifted absorbance peaks compared with other characterized plant and algal phytochromes. Exposure to both red and far-red light causes changes in gene expression in P. tricornutum, and the responses to far-red light disappear in DPH knockout cells, demonstrating that P. tricornutum DPH mediates far-red light signaling. The identification of DPH genes in diverse diatom species widely distributed along the water column further emphasizes the ecological significance of far-red light sensing, raising questions about the sources of far-red light. Our analyses indicate that, although far-red wavelengths from sunlight are only detectable at the ocean surface, chlorophyll fluorescence and Raman scattering can generate red/far-red photons in deeper layers. This study opens up novel perspectives on phytochrome-mediated far-red light signaling in the ocean and on the light sensing and adaptive capabilities of marine phototrophs. PMID:26941092

  15. Experimental design approach to evaluate the impact of oak chips and micro-oxygenation on the volatile profile of red wines.

    PubMed

    Pizarro, C; Rodríguez-Tecedor, S; Esteban-Díez, I; Pérez-del-Notario, N; González-Sáiz, J M

    2014-04-01

    A chemometric strategy based on combining an experimental design approach and response surface methodology was applied to gain further knowledge on the influence of chip maceration and micro-oxygenation related factors (oxygen doses, chip doses, wood origin, toasting degree and maceration time) on the volatile profile of red wines during the accelerated ageing process. The results obtained indicated that the volatile profile of wines could be modulated by applying different combinations of factor conditions. Thus, these results would be used to obtain wines with specific volatile profiles that would lead to particular olfactory attributes according to consumers' preferences. Moreover, it was shown that combining wood from different origins helped enhance the quality of the elaborated wines. To the best of our knowledge, this is the first time that an experimental design methodology has been applied to simultaneously evaluate the influence of five different ageing parameters on the volatile profile of red wines. PMID:24262569

  16. Metagenomic study of red biofilms from Diamante Lake reveals ancient arsenic bioenergetics in haloarchaea.

    PubMed

    Rascovan, Nicolás; Maldonado, Javier; Vazquez, Martín P; Eugenia Farías, María

    2016-02-01

    Arsenic metabolism is proposed to be an ancient mechanism in microbial life. Different bacteria and archaea use detoxification processes to grow under high arsenic concentration. Some of them are also able to use arsenic as a bioenergetic substrate in either anaerobic arsenate respiration or chemolithotrophic growth on arsenite. However, among the archaea, bioenergetic arsenic metabolism has only been found in the Crenarchaeota phylum. Here we report the discovery of haloarchaea (Euryarchaeota phylum) biofilms forming under the extreme environmental conditions such as high salinity, pH and arsenic concentration at 4589 m above sea level inside a volcano crater in Diamante Lake, Argentina. Metagenomic analyses revealed a surprisingly high abundance of genes used for arsenite oxidation (aioBA) and respiratory arsenate reduction (arrCBA) suggesting that these haloarchaea use arsenic compounds as bioenergetics substrates. We showed that several haloarchaea species, not only from this study, have all genes required for these bioenergetic processes. The phylogenetic analysis of aioA showed that haloarchaea sequences cluster in a novel and monophyletic group, suggesting that the origin of arsenic metabolism in haloarchaea is ancient. Our results also suggest that arsenite chemolithotrophy likely emerged within the archaeal lineage. Our results give a broad new perspective on the haloarchaea metabolism and shed light on the evolutionary history of arsenic bioenergetics. PMID:26140530

  17. Regal phylogeography: Range-wide survey of the marine angelfish Pygoplites diacanthus reveals evolutionary partitions between the Red Sea, Indian Ocean, and Pacific Ocean.

    PubMed

    Coleman, Richard R; Eble, Jeffrey A; DiBattista, Joseph D; Rocha, Luiz A; Randall, John E; Berumen, Michael L; Bowen, Brian W

    2016-07-01

    The regal angelfish (Pygoplites diacanthus; family Pomacanthidae) occurs on reefs from the Red Sea to the central Pacific, with an Indian Ocean/Rea Sea color morph distinct from a Pacific Ocean morph. To assess population differentiation and evaluate the possibility of cryptic evolutionary partitions in this monotypic genus, we surveyed mtDNA cytochrome b and two nuclear introns (S7 and RAG2) in 547 individuals from 15 locations. Phylogeographic analyses revealed four mtDNA lineages (d=0.006-0.015) corresponding to the Pacific Ocean, the Red Sea, and two admixed lineages in the Indian Ocean, a pattern consistent with known biogeographic barriers. Christmas Island in the eastern Indian Ocean had both Indian and Pacific lineages. Both S7 and RAG2 showed strong population-level differentiation between the Red Sea, Indian Ocean, and Pacific Ocean (ΦST=0.066-0.512). The only consistent population sub-structure within these three regions was at the Society Islands (French Polynesia), where surrounding oceanographic conditions may reinforce isolation. Coalescence analyses indicate the Pacific (1.7Ma) as the oldest extant lineage followed by the Red Sea lineage (1.4Ma). Results from a median-joining network suggest radiations of two lineages from the Red Sea that currently occupy the Indian Ocean (0.7-0.9Ma). Persistence of a Red Sea lineage through Pleistocene glacial cycles suggests a long-term refuge in this region. The affiliation of Pacific and Red Sea populations, apparent in cytochrome b and S7 (but equivocal in RAG2) raises the hypothesis that the Indian Ocean was recolonized from the Red Sea, possibly more than once. Assessing the genetic architecture of this widespread monotypic genus reveals cryptic evolutionary diversity that merits subspecific recognition. We recommend P.d. diacanthus and P.d. flavescens for the Pacific and Indian Ocean/Red Sea forms. PMID:27068838

  18. Iowa's oldest oaks. [Quercus alba

    SciTech Connect

    Duvick, D.N.; Blasing, T.J.

    1983-01-01

    Tree-ring analysis revealed 33 living white oaks (Quercus alba) in Iowa that began growing before 1700. Core of wood 4 mm in diameter, each extracted from a radius of a tree trunk were analyzed. The oldest white oak, found in northeastern Warren County, began growing about 1570 and is thus over 410 years old. A chinkapin oak (Quercus muehlenbergii) was also found which was more than 300 years old. Ring widths from the white oaks are well correlated with total precipitation for the twelve months preceding completion of ring formation in July. Reconstructions of annual (August-July) precipitation for 1680-1979, based on the tree rings, indicate that the driest annual period in Iowa was August 1799-July 1800, and that the driest decade began about 1816. Climatic information of this kind, pre-dating written weather records, can be used to augment those records and provide a longer baseline of information for use by climatologists and hydrologic planners.

  19. Why Is Seed Production So Variable among Individuals? A Ten-Year Study with Oaks Reveals the Importance of Soil Environment

    PubMed Central

    Pérez-Ramos, Ignacio M.; Aponte, Cristina; García, Luis V.; Padilla-Díaz, Carmen M.; Marañón, Teodoro

    2014-01-01

    Mast-seeding species exhibit not only a large inter-annual variability in seed production but also considerable variability among individuals within the same year. However, very little is known about the causes and consequences for population dynamics of this potentially large between-individual variability. Here, we quantified seed production over ten consecutive years in two Mediterranean oak species – the deciduous Quercus canariensis and the evergreen Q. suber - that coexist in forests of southern Spain. First, we calibrated likelihood models to identify which abiotic and biotic variables best explain the magnitude (hereafter seed productivity) and temporal variation of seed production at the individual level (hereafter CVi), and infer whether reproductive effort results from the available soil resources for the plant or is primarily determined by selectively favoured strategies. Second, we explored the contribution of between-individual variability in seed production as a potential mechanism of satiation for predispersal seed predators. We found that Q. canariensis trees inhabiting moister and more fertile soils were more productive than those growing in more resource-limited sites. Regarding temporal variation, individuals of the two studied oak species inhabiting these resource-rich environments also exhibited larger values of CVi. Interestingly, we detected a satiating effect on granivorous insects at the tree level in Q. suber, which was evident in those years where between-individual variability in acorn production was higher. These findings suggest that individual seed production (both in terms of seed productivity and inter-annual variability) is strongly dependent on soil resource heterogeneity (at least for one of the two studied oak species) with potential repercussions for recruitment and population dynamics. However, other external factors (such as soil heterogeneity in pathogen abundance) or certain inherent characteristics of the tree might be

  20. Crystallographic study of red fluorescent protein eqFP578 and its far-red variant Katushka reveals opposite pH-induced isomerization of chromophore

    SciTech Connect

    Pletneva, Nadya V.; Pletnev, Vladimir Z.; Shemiakina, Irina I.; Chudakov, Dmitriy M.; Artemyev, Igor; Wlodawer, Alexander; Dauter, Zbigniew; Pletnev, Sergei

    2012-08-10

    The wild type red fluorescent protein eqFP578 (from sea anemone Entacmaea quadricolor, {lambda}{sub ex} = 552 nm, {lambda}{sub em} = 578 nm) and its bright far-red fluorescent variant Katushka ({lambda}{sub ex} = 588 nm, {lambda}{sub em} = 635 nm) are characterized by the pronounced pH dependence of their fluorescence. The crystal structures of eqFP578f (eqFP578 with two point mutations improving the protein folding) and Katushka have been determined at the resolution ranging from 1.15 to 1.85 {angstrom} at two pH values, corresponding to low and high level of fluorescence. The observed extinguishing of fluorescence upon reducing pH in eqFP578f and Katushka has been shown to be accompanied by the opposite trans-cis and cis-trans chromophore isomerization, respectively. Asn143, Ser158, His197 and Ser143, Leu174, and Arg197 have been shown to stabilize the respective trans and cis fluorescent states of the chromophores in eqFP578f and Katushka at higher pH. The cis state has been suggested as being primarily responsible for the observed far-red shift of the emission maximum of Katushka relative to that of eqFP578f.

  1. Comparative genomics reveals adaptations of a halotolerant thaumarchaeon in the interfaces of brine pools in the Red Sea

    PubMed Central

    Kamanda Ngugi, David; Blom, Jochen; Alam, Intikhab; Rashid, Mamoon; Ba-Alawi, Wail; Zhang, Guishan; Hikmawan, Tyas; Guan, Yue; Antunes, Andre; Siam, Rania; El Dorry, Hamza; Bajic, Vladimir; Stingl, Ulrich

    2015-01-01

    The bottom of the Red Sea harbors over 25 deep hypersaline anoxic basins that are geochemically distinct and characterized by vertical gradients of extreme physicochemical conditions. Because of strong changes in density, particulate and microbial debris get entrapped in the brine-seawater interface (BSI), resulting in increased dissolved organic carbon, reduced dissolved oxygen toward the brines and enhanced microbial activities in the BSI. These features coupled with the deep-sea prevalence of ammonia-oxidizing archaea (AOA) in the global ocean make the BSI a suitable environment for studying the osmotic adaptations and ecology of these important players in the marine nitrogen cycle. Using phylogenomic-based approaches, we show that the local archaeal community of five different BSI habitats (with up to 18.2% salinity) is composed mostly of a single, highly abundant Nitrosopumilus-like phylotype that is phylogenetically distinct from the bathypelagic thaumarchaea; ammonia-oxidizing bacteria were absent. The composite genome of this novel Nitrosopumilus-like subpopulation (RSA3) co-assembled from multiple single-cell amplified genomes (SAGs) from one such BSI habitat further revealed that it shares ∼54% of its predicted genomic inventory with sequenced Nitrosopumilus species. RSA3 also carries several, albeit variable gene sets that further illuminate the phylogenetic diversity and metabolic plasticity of this genus. Specifically, it encodes for a putative proline-glutamate ‘switch' with a potential role in osmotolerance and indirect impact on carbon and energy flows. Metagenomic fragment recruitment analyses against the composite RSA3 genome, Nitrosopumilus maritimus, and SAGs of mesopelagic thaumarchaea also reiterate the divergence of the BSI genotypes from other AOA. PMID:25105904

  2. Comparative genomics reveals adaptations of a halotolerant thaumarchaeon in the interfaces of brine pools in the Red Sea.

    PubMed

    Kamanda Ngugi, David; Blom, Jochen; Alam, Intikhab; Rashid, Mamoon; Ba-Alawi, Wail; Zhang, Guishan; Hikmawan, Tyas; Guan, Yue; Antunes, Andre; Siam, Rania; El Dorry, Hamza; Bajic, Vladimir; Stingl, Ulrich

    2015-02-01

    The bottom of the Red Sea harbors over 25 deep hypersaline anoxic basins that are geochemically distinct and characterized by vertical gradients of extreme physicochemical conditions. Because of strong changes in density, particulate and microbial debris get entrapped in the brine-seawater interface (BSI), resulting in increased dissolved organic carbon, reduced dissolved oxygen toward the brines and enhanced microbial activities in the BSI. These features coupled with the deep-sea prevalence of ammonia-oxidizing archaea (AOA) in the global ocean make the BSI a suitable environment for studying the osmotic adaptations and ecology of these important players in the marine nitrogen cycle. Using phylogenomic-based approaches, we show that the local archaeal community of five different BSI habitats (with up to 18.2% salinity) is composed mostly of a single, highly abundant Nitrosopumilus-like phylotype that is phylogenetically distinct from the bathypelagic thaumarchaea; ammonia-oxidizing bacteria were absent. The composite genome of this novel Nitrosopumilus-like subpopulation (RSA3) co-assembled from multiple single-cell amplified genomes (SAGs) from one such BSI habitat further revealed that it shares ∼54% of its predicted genomic inventory with sequenced Nitrosopumilus species. RSA3 also carries several, albeit variable gene sets that further illuminate the phylogenetic diversity and metabolic plasticity of this genus. Specifically, it encodes for a putative proline-glutamate 'switch' with a potential role in osmotolerance and indirect impact on carbon and energy flows. Metagenomic fragment recruitment analyses against the composite RSA3 genome, Nitrosopumilus maritimus, and SAGs of mesopelagic thaumarchaea also reiterate the divergence of the BSI genotypes from other AOA. PMID:25105904

  3. Glacial and pluvial periods: their relationship revealed by pleistocene sediments of the red sea and gulf of aden.

    PubMed

    Deuser, W G; Ross, E H; Waterman, L S

    1976-03-19

    Oxygen isotope analyses of planktonic foraminifera from the Red Sea and Gulf of Aden indicate that during periods of maximum continental and polar glaciation in the late Pleistocene, the Red Sea was subject to strong evaporation. Between glacial maximums the salinity of the Red Sea was equal to or below that of the open ocean. This suggests that high-latitude glacial periods corresponded in time to interpluvial stages in the present-day desert belt of northern Africa, whereas high-latitude interglacial periods coincided with pluvial stages. PMID:17781646

  4. AmeriFlux US-Oho Oak Openings

    SciTech Connect

    Chen, Jiquan

    2016-01-01

    This is the AmeriFlux version of the carbon flux data for the site US-Oho Oak Openings. Site Description - The Ohio Oak Openings site is located within the Oak Openings Preserve Metropark of northwest Ohio, one of the few remaining oak woodlands/savanna/prairie complexes in the Midwest. Declared one of the "One of America's Last Great Places" by the Nature Conservancy the area consists of four main vegetation types: Oak Woodlands, Oak Savanna, Floodplain Forests and Wet Prairies. The stand surrounding the tower is mainly Oak Woodlands dominated by red, white and black oaks with a relatively abundant population of red maples indicating high soil moisture retention and a history of limited fire disturbances. Most of the area was cleared for agriculture at the time of Euro-American settlements in the mid to late-19th century. A large fraction of the cleared land was later abandoned due to the poor sandy soils. These areas reverted to Oak Savannas and in cases where fire was limited progressively made the transition to Oak Woodlands. Today patches of the forest are burned every few years as part of prescribed burning cycle to control stand density.

  5. High genetic divergence in miniature breeds of Japanese native chickens compared to Red Junglefowl, as revealed by microsatellite analysis.

    PubMed

    Tadano, R; Nishibori, M; Imamura, Y; Matsuzaki, M; Kinoshita, K; Mizutani, M; Namikawa, T; Tsudzuki, M

    2008-02-01

    A wide diversity of domesticated chicken breeds exist due to artificial selection on the basis of human interests. Miniature variants (bantams) are eminently illustrative of the large changes from ancestral junglefowls. In this report, the genetic characterization of seven Japanese miniature chicken breeds and varieties, together with institute-kept Red Junglefowl, was conducted by means of typing 40 microsatellites located on 21 autosomes. We drew focus to genetic differentiation between the miniature chicken breeds and Red Junglefowl in particular. A total of 305 alleles were identified: 27 of these alleles (8.9%) were unique to the Red Junglefowl with high frequencies (>20%). Significantly high genetic differences (F(ST)) were obtained between Red Junglefowl and all other breeds with a range of 0.3901-0.5128. Individual clustering (constructed from combinations of the proportion of shared alleles and the neighbour-joining method) indicated high genetic divergence among breeds including Red Junglefowl. There were also individual assignments on the basis of the Bayesian and distance-based approaches. The microsatellite differences in the miniature chicken breeds compared to the presumed wild ancestor reflected the phenotypic diversity among them, indicating that each of these miniature chicken breeds is a unique gene pool. PMID:18254737

  6. New Records Reveal the Actual Distribution of Cratomelus meritus Gorochov (Orthoptera: Anostostomatidae), a Giant Red Cricket from Chile.

    PubMed

    Alfaro, F M; Zuñiga-Reinoso, A; Muñoz-Ramírez, C; Elgueta, M

    2015-04-01

    The geographic distribution of the red cricket Cratomelus meritus Gorochov had remained unknown until now due to mislabeling and lack of new records. The aim of this short communication is to uncover and establish the actual distribution of the species on the basis of new records and discuss potential biogeographic hypotheses about its distribution. PMID:26013139

  7. Range-wide multilocus phylogeography of the red fox reveals ancient continental divergence, minimal genomic exchange and distinct demographic histories.

    PubMed

    Statham, Mark J; Murdoch, James; Janecka, Jan; Aubry, Keith B; Edwards, Ceiridwen J; Soulsbury, Carl D; Berry, Oliver; Wang, Zhenghuan; Harrison, David; Pearch, Malcolm; Tomsett, Louise; Chupasko, Judith; Sacks, Benjamin N

    2014-10-01

    Widely distributed taxa provide an opportunity to compare biogeographic responses to climatic fluctuations on multiple continents and to investigate speciation. We conducted the most geographically and genomically comprehensive study to date of the red fox (Vulpes vulpes), the world's most widely distributed wild terrestrial carnivore. Analyses of 697 bp of mitochondrial sequence in ~1000 individuals suggested an ancient Middle Eastern origin for all extant red foxes and a 400 kya (SD = 139 kya) origin of the primary North American (Nearctic) clade. Demographic analyses indicated a major expansion in Eurasia during the last glaciation (~50 kya), coinciding with a previously described secondary transfer of a single matriline (Holarctic) to North America. In contrast, North American matrilines (including the transferred portion of Holarctic clade) exhibited no signatures of expansion until the end of the Pleistocene (~12 kya). Analyses of 11 autosomal loci from a subset of foxes supported the colonization time frame suggested by mtDNA (and the fossil record) but, in contrast, reflected no detectable secondary transfer, resulting in the most fundamental genomic division of red foxes at the Bering Strait. Endemic continental Y-chromosome clades further supported this pattern. Thus, intercontinental genomic exchange was overall very limited, consistent with long-term reproductive isolation since the initial colonization of North America. Based on continental divergence times in other carnivoran species pairs, our findings support a model of peripatric speciation and are consistent with the previous classification of the North American red fox as a distinct species, V. fulva. PMID:25212210

  8. THE RISE AND FALL OF PASSIVE DISK GALAXIES: MORPHOLOGICAL EVOLUTION ALONG THE RED SEQUENCE REVEALED BY COSMOS

    SciTech Connect

    Bundy, Kevin; Hopkins, Philip; Ma, Chung-Pei; Scarlata, Claudia; Capak, Peter; Carollo, C. M.; Oesch, Pascal; Ellis, Richard S.; Salvato, Mara; Scoville, Nick; Drory, Niv; Leauthaud, Alexie; Koekemoer, Anton M.; Murray, Norman; Ilbert, Olivier; Pozzetti, Lucia

    2010-08-20

    The increasing abundance of passive 'red-sequence' galaxies since z {approx} 1-2 is mirrored by a coincident rise in the number of galaxies with spheroidal morphologies. In this paper, however, we show in detail, that, the correspondence between galaxy morphology and color is not perfect, providing insight into the physical origin of this evolution. Using the COSMOS survey, we study a significant population of red-sequence galaxies with disk-like morphologies. These passive disks typically have Sa-Sb morphological types with large bulges, but they are not confined to dense environments. They represent nearly one-half of all red-sequence galaxies and dominate at lower masses ({approx}<10{sup 10} M{sub sun}) where they are increasingly disk-dominated. As a function of time, the abundance of passive disks with M {sub *} {approx}< 10{sup 11} M{sub sun} increases, but not as fast as red-sequence spheroidals in the same mass range. At higher mass, the passive disk population has declined since z {approx} 1, likely because they transform into spheroidals. Based on these trends, we estimate that as much as 60% of galaxies transitioning onto the red sequence evolve through a passive disk phase. The origin of passive disks therefore has broad implications for our understanding of how star formation shuts down. Because passive disks tend to be more bulge-dominated than their star-forming counterparts, a simple fading of blue disks does not fully explain their origin. We explore the strengths and weaknesses of several more sophisticated explanations, including environmental effects, internal stabilization, and disk regrowth during gas-rich mergers. While previous work has sought to explain color and morphological transformations with a single process, these observations open the way to new insight by highlighting the fact that galaxy evolution may actually proceed through several separate stages.

  9. Chloride accumulation in the soil and groundwater under a downslope oak hedge reveals the impressive evapotranspiration of wooded linear structures below a temperate climate

    NASA Astrophysics Data System (ADS)

    Grimaldi, C.; Thomas, Z.; Merot, Ph.

    2009-04-01

    Although it is an essential element in plants, Cl- is excluded to a large extent by roots during absorption of water and nutrients, and its concentration rises as a function of evapotranspiration. Compared to herbaceous vegetation, high transpiration rates are measured for hedgerow trees. This article deals with the influence of a tree hedge on the soil and groundwater Cl- concentrations and with the possibility to use Cl- as an indicator of transpiration and water movements in the hedge vicinity. Cl- concentrations were measured over one year at different depths in the unsaturated zone and in the groundwater along a transect intersecting a bottomland oak hedge in the North-West of France, under an oceanic wet temperate climate. We observed a strong spatial variation of Cl- concentrations, with very high values up to 2 g L-1 in the unsaturated zone and 1.2 g L-1 in the upper part of the groundwater. These concentrations contrasted with the low values measured in the unsaturated zone far from the hedge (10 mg L-1) and in the deepest part of the groundwater (60-70 mg L-1). Cl- accumulation in the unsaturated zone at the end of the growing season allowed us to identify the active root zone extension of trees. The root zone begins at the surface under the hedge and widens out at depth at an increasing distance from the hedge, extending laterally on at least 10 m on both sides of the hedge. While the root zone is deeper at the upslope side of the hedge, it is nearer the ground surface downslope, where the development of roots is limited by the water-table close to the surface. Cl- concentrations varied along the year. In winter, upslope of the hedge, downwards leaching partly renewed the soil solution, while under the hedge or farther downslope the lack of any significant water movement resulted in Cl- accumulation. For a bottomland hedge, the proximity of the water-table probably increases the water availability of water for tree transpiration. The measurement of Cl

  10. Standing-wave-excited multiplanar fluorescence in a laser scanning microscope reveals 3D information on red blood cells

    PubMed Central

    Amor, Rumelo; Mahajan, Sumeet; Amos, William Bradshaw; McConnell, Gail

    2014-01-01

    Standing-wave excitation of fluorescence is highly desirable in optical microscopy because it improves the axial resolution. We demonstrate here that multiplanar excitation of fluorescence by a standing wave can be produced in a single-spot laser scanning microscope by placing a plane reflector close to the specimen. We report here a variation in the intensity of fluorescence of successive planes related to the Stokes shift of the dye. We show by the use of dyes specific for the cell membrane how standing-wave excitation can be exploited to generate precise contour maps of the surface membrane of red blood cells, with an axial resolution of ≈90 nm. The method, which requires only the addition of a plane mirror to an existing confocal laser scanning microscope, may well prove useful in studying diseases which involve the red cell membrane, such as malaria. PMID:25483987

  11. Standing-wave-excited multiplanar fluorescence in a laser scanning microscope reveals 3D information on red blood cells

    NASA Astrophysics Data System (ADS)

    Amor, Rumelo; Mahajan, Sumeet; Amos, William Bradshaw; McConnell, Gail

    2014-12-01

    Standing-wave excitation of fluorescence is highly desirable in optical microscopy because it improves the axial resolution. We demonstrate here that multiplanar excitation of fluorescence by a standing wave can be produced in a single-spot laser scanning microscope by placing a plane reflector close to the specimen. We report here a variation in the intensity of fluorescence of successive planes related to the Stokes shift of the dye. We show by the use of dyes specific for the cell membrane how standing-wave excitation can be exploited to generate precise contour maps of the surface membrane of red blood cells, with an axial resolution of ~90 nm. The method, which requires only the addition of a plane mirror to an existing confocal laser scanning microscope, may well prove useful in studying diseases which involve the red cell membrane, such as malaria.

  12. Structural Glitches near the Cores of Red Giants Revealed by Oscillations in g-mode Period Spacings from Stellar Models

    NASA Astrophysics Data System (ADS)

    Cunha, M. S.; Stello, D.; Avelino, P. P.; Christensen-Dalsgaard, J.; Townsend, R. H. D.

    2015-06-01

    With recent advances in asteroseismology it is now possible to peer into the cores of red giants, potentially providing a way to study processes such as nuclear burning and mixing through their imprint as sharp structural variations—glitches—in the stellar cores. Here we show how such core glitches can affect the oscillations we observe in red giants. We derive an analytical expression describing the expected frequency pattern in the presence of a glitch. This formulation also accounts for the coupling between acoustic and gravity waves. From an extensive set of canonical stellar models we find glitch-induced variation in the period spacing and inertia of non-radial modes during several phases of red giant evolution. Significant changes are seen in the appearance of mode amplitude and frequency patterns in asteroseismic diagrams such as the power spectrum and the échelle diagram. Interestingly, along the red giant branch glitch-induced variation occurs only at the luminosity bump, potentially providing a direct seismic indicator of stars in that particular evolution stage. Similarly, we find the variation at only certain post-helium-ignition evolution stages, namely, in the early phases of helium core burning and at the beginning of helium shell burning, signifying the asymptotic giant branch bump. Based on our results, we note that assuming stars to be glitch-free, while they are not, can result in an incorrect estimate of the period spacing. We further note that including diffusion and mixing beyond classical Schwarzschild could affect the characteristics of the glitches, potentially providing a way to study these physical processes.

  13. Stable oxygen isotope analysis reveal vegetation influence on soil water movement and ecosystem water fluxes in a semi-arid oak woodland

    NASA Astrophysics Data System (ADS)

    Piayda, Arndt; Dubbert, Maren; Werner, Christiane; Cuntz, Matthias

    2015-04-01

    Mechanistically disentangling the role and function of vegetation within the hydrological cycle is one of the key questions in the interdisciplinary field of ecohydrology. The presence of vegetation can have various impacts on soil water relations: transpiration of active vegetation causes great water losses, rainfall is intercepted, soil evaporation can be reduced and infiltration, hydraulic redistribution and translatory flow might be altered. In drylands, covering around 40% of the global land surface, the carbon cycle is closely coupled to water availability due to (seasonal) droughts. Specifically savannah type ecosystems, which cover large areas worldwide, are, due to their bi-layered structure, very suitable to study the effects of distinct vegetation types on the ecosystem water cycle. Oxygen isotope signatures (δ18O) have been used to partition ecosystem evapotranspiration (ET ) because of the distinct isotopic compositions of water transpired by leaves relative to soil evaporated vapor. Recent developments in laser spectroscopy enable measurements of δ18O in the vapor phase with high temporal resolution in the field and bear a novel opportunity to trace water movement within the ecosystem. In the present study, the effects of distinct vegetation layers (i.e. trees and herbaceous vegetation) on soil water infiltration and redistribution as well as ecosystem water fluxes in a Mediterranean cork-oak woodland are disentangled. An irrigation experiment was carried out using δ18O labeled water to quantify the distinct effects of trees and herbaceous vegetation on 1) infiltration and redistribution of water in the soil profile and 2) to disentangle the effects of tree cover on the contribution of unproductive soil evaporation and understory transpiration to total ET . First results proof that stable δ18O isotopes measured onsite with laser spectroscopy is a valuable tool to trace water movement in the soil showing a much higher sensitivity than common TDR

  14. Giants reveal what dwarfs conceal: Li abundance in lower red giant branch stars as diagnostic of the primordial Li

    NASA Astrophysics Data System (ADS)

    Mucciarelli, A.; Salaris, M.; Bonifacio, P.

    2012-01-01

    The discrepancy between cosmological Li abundance inferred from Population II dwarf stars and that derived from big bang nucleosynthesis calculations is still far from being satisfactorily solved. We investigated, as an alternative route, the use of Li abundances in Population II lower red giant branch stars as empirical diagnostic of the cosmological Li. Both theory and observations suggest that the surface Li abundance in metal-poor red giants after the completion of the first dredge-up and before the red giant branch bump is significantly less sensitive to the efficiency of atomic diffusion, compared with dwarf stars. The surface Li abundances in these objects - after the dilution caused by the first dredge-up - are predicted to be sensitive to the total Li content left in the star, i.e. they are affected only by the total amount of Li eventually burned during the previous main-sequence phase. Standard stellar models computed under different physical assumptions show that the inclusion of the atomic diffusion has an impact of about 0.07 dex in the determination of the primordial Li abundance - much smaller than the case of metal-poor main-sequence turnoff stars - and it is basically unaffected by reasonable variations of other parameters (overshooting, age, initial He abundance and mixing length). We have determined from spectroscopy the surface Li content of 17 halo lower red giant branch stars, in the metallicity range between [Fe/H] ˜- 3.4 and ˜- 1.4 dex, evolving before the extramixing episode that sets in at the red giant branch bump. The initial Li (customarily taken as estimate of the cosmological Li abundance A(Li)0) has then been inferred by accounting for the difference between initial and post-dredge-up Li abundances in the appropriate stellar models. It depends mainly on the Teff scale adopted in the spectroscopic analysis, and is only weakly sensitive to the efficiency of atomic diffusion in the models, so long as one neglects Li destruction

  15. Pyrosequencing revealed shifts of prokaryotic communities between healthy and disease-like tissues of the Red Sea sponge Crella cyathophora

    PubMed Central

    Gao, Zhao-Ming; Wang, Yong; Tian, Ren-Mao; Lee, On On; Wong, Yue Him; Batang, Zenon B.; Al-Suwailem, Abdulaziz; Lafi, Feras F.; Bajic, Vladimir B.

    2015-01-01

    Sponge diseases have been widely reported, yet the causal factors and major pathogenic microbes remain elusive. In this study, two individuals of the sponge Crella cyathophora in total that showed similar disease-like characteristics were collected from two different locations along the Red Sea coast separated by more than 30 kilometers. The disease-like parts of the two individuals were both covered by green surfaces, and the body size was much smaller compared with adjacent healthy regions. Here, using high-throughput pyrosequencing technology, we investigated the prokaryotic communities in healthy and disease-like sponge tissues as well as adjacent seawater. Microbes in healthy tissues belonged mainly to the Proteobacteria, Cyanobacteria and Bacteroidetes, and were much more diverse at the phylum level than reported previously. Interestingly, the disease-like tissues from the two sponge individuals underwent shifts of prokaryotic communities and were both enriched with a novel clade affiliated with the phylum Verrucomicrobia, implying its intimate connection with the disease-like Red Sea sponge C. cyathophora. Enrichment of the phylum Verrucomicrobia was also considered to be correlated with the presence of algae assemblages forming the green surface of the disease-like sponge tissues. This finding represents an interesting case of sponge disease and is valuable for further study. PMID:26082867

  16. The crystal structure of red fluorescent protein TagRFP-T reveals the mechanism of its superior photostability.

    PubMed

    Liu, Rui; Liang, Qing-Nan; Du, Shu-Qi; Hu, Xiao-Jian; Ding, Yu

    2016-08-19

    The red fluorescent protein variant TagRFP-T has greatly improved photostability over its parent molecule, TagRFP, but the underlying mechanism leading to this improvement is to date unknown. The 1.95 Å resolution crystallographic structure of TagRFP-T showed that its chromophore exists as a mixture of cis and trans coplanar isomers in roughly equal proportions. Interestingly, both isomers are able to fluoresce, a property that has never been observed in any other fluorescent protein. We propose a "circular restoration model" for TagRFP-T to explain its superior photostability: There are four co-existing chromophore states (cis/trans protonated/ionized state) that can be driven by light to transform from one state into another. This model also explains how TagRPF-T essentially eliminates the temporary dark state (reversible photobleaching). PMID:27297107

  17. Transcript Quantification by RNA-Seq Reveals Differentially Expressed Genes in the Red and Yellow Fruits of Fragaria vesca

    PubMed Central

    Zhang, Junxiang; Jiang, Guihua; Miao, Lixiang; Han, Guofen; Liu, Yuexue; Li, He; Zhang, Zhihong

    2015-01-01

    Fragaria vesca (2n = 2x = 14), the woodland strawberry, is a perennial herbaceous plant with a small sequenced genome (240 Mb). It is commonly used as a genetic model plant for the Fragaria genus and the Rosaceae family. Fruit skin color is one of the most important traits for both the commercial and esthetic value of strawberry. Anthocyanins are the most prominent pigments in strawberry that bring red, pink, white, and yellow hues to the fruits in which they accumulate. In this study, we conducted a de novo assembly of the fruit transcriptome of woodland strawberry and compared the gene expression profiles with yellow (Yellow Wonder, YW) and red (Ruegen, RG) fruits. De novo assembly yielded 75,426 unigenes, 21.3% of which were longer than 1,000 bp. Among the high-quality unique sequences, 45,387 (60.2%) had at least one significant match to an existing gene model. A total of 595 genes, representing 0.79% of total unigenes, were differentially expressed in YW and RG. Among them, 224 genes were up-regulated and 371 genes were down-regulated in the fruit of YW. Particularly, some flavonoid biosynthetic pathway genes, including C4H, CHS, CHI, F3H, DFR and ANS, as well as some transcription factors (TFs), including MYB (putative MYB86 and MYB39), WDR and MADS, were down-regulated in YW fruit, concurrent with a reduction in anthocyanin accumulation in the yellow pigment phenotype, whereas a putative transcription repressor MYB1R was up-regulated in YW fruit. The altered expression levels of the genes encoding flavonoid biosynthetic enzymes and TFs were confirmed by quantitative RT-PCR. Our study provides important insights into the molecular mechanisms underlying the yellow pigment phenotype in F. vesca. PMID:26636322

  18. Transcript Quantification by RNA-Seq Reveals Differentially Expressed Genes in the Red and Yellow Fruits of Fragaria vesca.

    PubMed

    Zhang, Yuchao; Li, Weijia; Dou, Yujuan; Zhang, Junxiang; Jiang, Guihua; Miao, Lixiang; Han, Guofen; Liu, Yuexue; Li, He; Zhang, Zhihong

    2015-01-01

    Fragaria vesca (2n = 2x = 14), the woodland strawberry, is a perennial herbaceous plant with a small sequenced genome (240 Mb). It is commonly used as a genetic model plant for the Fragaria genus and the Rosaceae family. Fruit skin color is one of the most important traits for both the commercial and esthetic value of strawberry. Anthocyanins are the most prominent pigments in strawberry that bring red, pink, white, and yellow hues to the fruits in which they accumulate. In this study, we conducted a de novo assembly of the fruit transcriptome of woodland strawberry and compared the gene expression profiles with yellow (Yellow Wonder, YW) and red (Ruegen, RG) fruits. De novo assembly yielded 75,426 unigenes, 21.3% of which were longer than 1,000 bp. Among the high-quality unique sequences, 45,387 (60.2%) had at least one significant match to an existing gene model. A total of 595 genes, representing 0.79% of total unigenes, were differentially expressed in YW and RG. Among them, 224 genes were up-regulated and 371 genes were down-regulated in the fruit of YW. Particularly, some flavonoid biosynthetic pathway genes, including C4H, CHS, CHI, F3H, DFR and ANS, as well as some transcription factors (TFs), including MYB (putative MYB86 and MYB39), WDR and MADS, were down-regulated in YW fruit, concurrent with a reduction in anthocyanin accumulation in the yellow pigment phenotype, whereas a putative transcription repressor MYB1R was up-regulated in YW fruit. The altered expression levels of the genes encoding flavonoid biosynthetic enzymes and TFs were confirmed by quantitative RT-PCR. Our study provides important insights into the molecular mechanisms underlying the yellow pigment phenotype in F. vesca. PMID:26636322

  19. RED STAR-FORMING GALAXIES AND THEIR ENVIRONMENT AT z = 0.4 REVEALED BY PANORAMIC H{alpha} IMAGING

    SciTech Connect

    Koyama, Yusei; Shimasaku, Kazuhiro; Okamura, Sadanori; Kodama, Tadayuki; Nakata, Fumiaki

    2011-06-10

    We present a wide-field H{alpha} imaging survey of the rich cluster CL0939+4713 (A851) at z = 0.41 with Suprime-Cam on the Subaru Telescope, using the narrow-band filter NB921. The survey is sensitive to active galaxies with star formation rates (SFRs) down to {approx}0.3 M{sub sun} yr{sup -1} throughout the 27' x 27' field. We identified 445 H{alpha} emitters along the large-scale structures around the cluster. Using this sample, we find that (1) the fraction of H{alpha} emitters is a strong function of environment and shows a clear decline toward the cluster central region, and (2) the color of H{alpha} emitters is clearly dependent on environment. The majority of the H{alpha} emitters have blue colors with B - I < 2, but we find H{alpha} emitters with red colors as well. Such red emitters are very rare in the cluster center or its immediate surrounding regions, while they are most frequently found in groups located far away from the cluster center. These groups coincide with the environment where a sharp transition in galaxy color distribution is seen. This may suggest that dusty star formation activity tends to be involved in galaxy truncation processes that are effective in groups, and that it is probably related to the 'pre-processing' that generates present-day cluster S0 galaxies. Finally, we confirm that (3) the mass-normalized integrated SFR in clusters (i.e., the total SFR within 0.5 x R{sub 200} from the cluster center divided by the cluster dynamical mass) rapidly increases with look-back time following approximately {proportional_to}(1 + z){sup 6} and is also correlated with the cluster mass.

  20. Real-Time Mass Spectrometry Monitoring of Oak Wood Toasting: Elucidating Aroma Development Relevant to Oak-aged Wine Quality

    NASA Astrophysics Data System (ADS)

    Farrell, Ross R.; Wellinger, Marco; Gloess, Alexia N.; Nichols, David S.; Breadmore, Michael C.; Shellie, Robert A.; Yeretzian, Chahan

    2015-11-01

    We introduce a real-time method to monitor the evolution of oak aromas during the oak toasting process. French and American oak wood boards were toasted in an oven at three different temperatures, while the process-gas was continuously transferred to the inlet of a proton-transfer-reaction time-of-flight mass spectrometer for online monitoring. Oak wood aroma compounds important for their sensory contribution to oak-aged wine were tentatively identified based on soft ionization and molecular mass. The time-intensity profiles revealed toasting process dynamics illustrating in real-time how different compounds evolve from the oak wood during toasting. Sufficient sensitivity was achieved to observe spikes in volatile concentrations related to cracking phenomena on the oak wood surface. The polysaccharide-derived compounds exhibited similar profiles; whilst for lignin-derived compounds eugenol formation differed from that of vanillin and guaiacol at lower toasting temperatures. Significant generation of oak lactone from precursors was evident at 225 oC. Statistical processing of the real-time aroma data showed similarities and differences between individual oak boards and oak wood sourced from the different origins. This study enriches our understanding of the oak toasting process and demonstrates a new analytical approach for research on wood volatiles.

  1. Real-Time Mass Spectrometry Monitoring of Oak Wood Toasting: Elucidating Aroma Development Relevant to Oak-aged Wine Quality

    PubMed Central

    Farrell, Ross R.; Wellinger, Marco; Gloess, Alexia N.; Nichols, David S.; Breadmore, Michael C.; Shellie, Robert A.; Yeretzian, Chahan

    2015-01-01

    We introduce a real-time method to monitor the evolution of oak aromas during the oak toasting process. French and American oak wood boards were toasted in an oven at three different temperatures, while the process-gas was continuously transferred to the inlet of a proton-transfer-reaction time-of-flight mass spectrometer for online monitoring. Oak wood aroma compounds important for their sensory contribution to oak-aged wine were tentatively identified based on soft ionization and molecular mass. The time-intensity profiles revealed toasting process dynamics illustrating in real-time how different compounds evolve from the oak wood during toasting. Sufficient sensitivity was achieved to observe spikes in volatile concentrations related to cracking phenomena on the oak wood surface. The polysaccharide-derived compounds exhibited similar profiles; whilst for lignin-derived compounds eugenol formation differed from that of vanillin and guaiacol at lower toasting temperatures. Significant generation of oak lactone from precursors was evident at 225 oC. Statistical processing of the real-time aroma data showed similarities and differences between individual oak boards and oak wood sourced from the different origins. This study enriches our understanding of the oak toasting process and demonstrates a new analytical approach for research on wood volatiles. PMID:26610612

  2. Real-Time Mass Spectrometry Monitoring of Oak Wood Toasting: Elucidating Aroma Development Relevant to Oak-aged Wine Quality.

    PubMed

    Farrell, Ross R; Wellinger, Marco; Gloess, Alexia N; Nichols, David S; Breadmore, Michael C; Shellie, Robert A; Yeretzian, Chahan

    2015-01-01

    We introduce a real-time method to monitor the evolution of oak aromas during the oak toasting process. French and American oak wood boards were toasted in an oven at three different temperatures, while the process-gas was continuously transferred to the inlet of a proton-transfer-reaction time-of-flight mass spectrometer for online monitoring. Oak wood aroma compounds important for their sensory contribution to oak-aged wine were tentatively identified based on soft ionization and molecular mass. The time-intensity profiles revealed toasting process dynamics illustrating in real-time how different compounds evolve from the oak wood during toasting. Sufficient sensitivity was achieved to observe spikes in volatile concentrations related to cracking phenomena on the oak wood surface. The polysaccharide-derived compounds exhibited similar profiles; whilst for lignin-derived compounds eugenol formation differed from that of vanillin and guaiacol at lower toasting temperatures. Significant generation of oak lactone from precursors was evident at 225 (o)C. Statistical processing of the real-time aroma data showed similarities and differences between individual oak boards and oak wood sourced from the different origins. This study enriches our understanding of the oak toasting process and demonstrates a new analytical approach for research on wood volatiles. PMID:26610612

  3. Quantitative phospho-proteomics reveals the Plasmodium merozoite triggers pre-invasion host kinase modification of the red cell cytoskeleton.

    PubMed

    Zuccala, Elizabeth S; Satchwell, Timothy J; Angrisano, Fiona; Tan, Yan Hong; Wilson, Marieangela C; Heesom, Kate J; Baum, Jake

    2016-01-01

    The invasive blood-stage malaria parasite - the merozoite - induces rapid morphological changes to the target erythrocyte during entry. However, evidence for active molecular changes in the host cell that accompany merozoite invasion is lacking. Here, we use invasion inhibition assays, erythrocyte resealing and high-definition imaging to explore red cell responses during invasion. We show that although merozoite entry does not involve erythrocyte actin reorganisation, it does require ATP to complete the process. Towards dissecting the ATP requirement, we present an in depth quantitative phospho-proteomic analysis of the erythrocyte during each stage of invasion. Specifically, we demonstrate extensive increased phosphorylation of erythrocyte proteins on merozoite attachment, including modification of the cytoskeletal proteins beta-spectrin and PIEZO1. The association with merozoite contact but not active entry demonstrates that parasite-dependent phosphorylation is mediated by host-cell kinase activity. This provides the first evidence that the erythrocyte is stimulated to respond to early invasion events through molecular changes in its membrane architecture. PMID:26830761

  4. Reverse Engineering Applied to Red Human Hair Pheomelanin Reveals Redox-Buffering as a Pro-Oxidant Mechanism

    PubMed Central

    Kim, Eunkyoung; Panzella, Lucia; Micillo, Raffaella; Bentley, William E.; Napolitano, Alessandra; Payne, Gregory F.

    2015-01-01

    Pheomelanin has been implicated in the increased susceptibility to UV-induced melanoma for people with light skin and red hair. Recent studies identified a UV-independent pathway to melanoma carcinogenesis and implicated pheomelanin’s pro-oxidant properties that act through the generation of reactive oxygen species and/or the depletion of cellular antioxidants. Here, we applied an electrochemically-based reverse engineering methodology to compare the redox properties of human hair pheomelanin with model synthetic pigments and natural eumelanin. This methodology exposes the insoluble melanin samples to complex potential (voltage) inputs and measures output response characteristics to assess redox activities. The results demonstrate that both eumelanin and pheomelanin are redox-active, they can rapidly (sec-min) and repeatedly redox-cycle between oxidized and reduced states, and pheomelanin possesses a more oxidative redox potential. This study suggests that pheomelanin’s redox-based pro-oxidant activity may contribute to sustaining a chronic oxidative stress condition through a redox-buffering mechanism. PMID:26669666

  5. Reverse Engineering Applied to Red Human Hair Pheomelanin Reveals Redox-Buffering as a Pro-Oxidant Mechanism.

    PubMed

    Kim, Eunkyoung; Panzella, Lucia; Micillo, Raffaella; Bentley, William E; Napolitano, Alessandra; Payne, Gregory F

    2015-01-01

    Pheomelanin has been implicated in the increased susceptibility to UV-induced melanoma for people with light skin and red hair. Recent studies identified a UV-independent pathway to melanoma carcinogenesis and implicated pheomelanin's pro-oxidant properties that act through the generation of reactive oxygen species and/or the depletion of cellular antioxidants. Here, we applied an electrochemically-based reverse engineering methodology to compare the redox properties of human hair pheomelanin with model synthetic pigments and natural eumelanin. This methodology exposes the insoluble melanin samples to complex potential (voltage) inputs and measures output response characteristics to assess redox activities. The results demonstrate that both eumelanin and pheomelanin are redox-active, they can rapidly (sec-min) and repeatedly redox-cycle between oxidized and reduced states, and pheomelanin possesses a more oxidative redox potential. This study suggests that pheomelanin's redox-based pro-oxidant activity may contribute to sustaining a chronic oxidative stress condition through a redox-buffering mechanism. PMID:26669666

  6. Quantitative phospho-proteomics reveals the Plasmodium merozoite triggers pre-invasion host kinase modification of the red cell cytoskeleton

    PubMed Central

    Zuccala, Elizabeth S.; Satchwell, Timothy J.; Angrisano, Fiona; Tan, Yan Hong; Wilson, Marieangela C.; Heesom, Kate J.; Baum, Jake

    2016-01-01

    The invasive blood-stage malaria parasite – the merozoite – induces rapid morphological changes to the target erythrocyte during entry. However, evidence for active molecular changes in the host cell that accompany merozoite invasion is lacking. Here, we use invasion inhibition assays, erythrocyte resealing and high-definition imaging to explore red cell responses during invasion. We show that although merozoite entry does not involve erythrocyte actin reorganisation, it does require ATP to complete the process. Towards dissecting the ATP requirement, we present an in depth quantitative phospho-proteomic analysis of the erythrocyte during each stage of invasion. Specifically, we demonstrate extensive increased phosphorylation of erythrocyte proteins on merozoite attachment, including modification of the cytoskeletal proteins beta-spectrin and PIEZO1. The association with merozoite contact but not active entry demonstrates that parasite-dependent phosphorylation is mediated by host-cell kinase activity. This provides the first evidence that the erythrocyte is stimulated to respond to early invasion events through molecular changes in its membrane architecture. PMID:26830761

  7. Use of the mercury record in Red Tarn sediments to reveal air pollution history and the implications of catchment erosion.

    PubMed

    Yang, Handong; Smyntek, Peter

    2014-11-01

    Red Tarn is a cirque lake with a small ratio of terrestrial area to lake area, surrounded by glacial edges with little soil in the catchment. A sediment core taken from the deepest area of the lake was (210)Pb dated and validated by (137)Cs and (241)Am stratigraphic records. The core was analysed for mercury (Hg) and other elements. The results show Hg pollution before the mid-19th century, and thereafter, a rapid increase in Hg pollution into modern time, followed by a decline in pollution since 1968-1970. This agrees well with the decline in UK Hg emissions since the Clear Air Act of 1968. The results suggest that the core has recorded Hg air pollution history, and it can be used to benchmark Hg changes in the sediments from other lakes in the region up to the late 1980s. However, increased (210)Pb fluxes after the late 1980s indicate enhanced catchment erosion, which has brought more legacy Hg in the catchment into the lake. As a consequence, since 2000, the Hg in the sediment record no longer reflects the atmospheric Hg deposition. The core shows how dominant Hg sources for the lake changed from atmospheric deposition to the catchment inputs, and demonstrates that contaminated catchment inputs have not only increased Hg fluxes to the lake sediments but have also increased Hg concentrations in the sediments. PMID:25224269

  8. Long-term monitoring of captive red drum Sciaenops ocellatus reveals that calling incidence and structure correlate with egg deposition.

    PubMed

    Montie, E W; Kehrer, C; Yost, J; Brenkert, K; O'Donnell, T; Denson, M R

    2016-05-01

    In the present study, quantitative data were collected to clarify the relationship between calling, call structure and eggs produced in a captive population of red drum Sciaenops ocellatus. Sciaenops ocellatus were held in four tanks equipped with long-term acoustic loggers to record underwater sound throughout a simulated reproductive season. Maximal sound production of captive S. ocellatus occurred when the photoperiod shifted from 13·0 to 12·5 h of light, and the water temperature decreased to c. 25° C. These captive settings are similar to the amount of daylight and water temperatures observed during the autumn, which is the primary spawning period for S. ocellatus. Sciaenops ocellatus exhibited daily patterns of calling with peak sound production occurring in the evenings between 0·50 h before dark and 1·08 h after dark. Spawning occurred only on evenings in which S. ocellatus were calling, and spawning was more productive when S. ocellatus produced more calls with longer durations and more pulses. This study provides ample evidence that sound production equates to spawning in captive S. ocellatus when calls are longer than 0·8 s and contain more than seven pulses. The fact that more calling, longer calls and higher sound pressure levels are associated with spawns that are more productive indicates that acoustic metrics can provide quantitative information on spawning in the wild. PMID:27170109

  9. Continental-scale analysis reveals deep diversification within the polytypic Red-crowned Ant Tanager (Habia rubica, Cardinalidae).

    PubMed

    Lavinia, Pablo D; Escalante, Patricia; García, Natalia C; Barreira, Ana S; Trujillo-Arias, Natalia; Tubaro, Pablo L; Naoki, Kazuya; Miyaki, Cristina Y; Santos, Fabrício R; Lijtmaer, Darío A

    2015-08-01

    We explored the phylogeographic patterns of intraspecific diversity in the Red-crowned Ant Tanager (Habia rubica) throughout its continent-wide distribution, in order to understand its evolutionary history and the role of evolutionary drivers that are considered to promote avian diversification in the Neotropics. We sampled 100 individuals of H. rubica from Mexico to Argentina covering the main areas of its disjunct distribution. We inferred phylogenetic relationships through Bayesian and maximum parsimony methodologies based on mitochondrial and nuclear markers, and complemented genetic analyses with the assessment of coloration and behavioral differentiation. We found four deeply divergent phylogroups within H. rubica: two South American lineages and two Mexican and Middle American lineages. The divergence event between the northern and southern phylogroups was dated to c. 5.0 Ma, seemingly related to the final uplift of the Northern Andes. Subsequently, the two South American phylogroups split c. 3.5 Ma possibly due to the development of the open vegetation corridor that currently isolates the Amazonian and Atlantic forests. Diversification throughout Mexico and Middle America, following dispersion across the Isthmus of Panama, was presumably more recent and coincident with Pleistocene climatic fluctuations and habitat fragmentations. The analyses of vocalizations and plumage coloration showed significant differences among main lineages that were consistent with the phylogenetic evidence. Our findings suggest that the evolutionary history of H. rubica has been shaped by an assortment of diversification drivers at different temporal and spatial scales resulting in deeply divergent lineages that we recommend should be treated as different species. PMID:25929787

  10. Analysis of rbcL sequences reveals the global biodiversity, community structure, and biogeographical pattern of thermoacidophilic red algae (Cyanidiales).

    PubMed

    Hsieh, Chia-Jung; Zhan, Shing Hei; Lin, Yiching; Tang, Sen-Lin; Liu, Shao-Lun

    2015-08-01

    Thermoacidophilic cyanidia (Cyanidiales) are the primary photosynthetic eukaryotes in volcanic areas. These red algae also serve as important model organisms for studying life in extreme habitats. The global biodiversity and community structure of Cyanidiales remain unclear despite previous sampling efforts. Here, we surveyed the Cyanidiales biodiversity in the Tatun Volcano Group (TVG) area in Taiwan using environmental DNA sequencing. We generated 174 rbcL sequences from eight samples from four regions in the TVG area, and combined them with 239 publicly available rbcL sequences collected worldwide. Species delimita-tion using this large rbcL data set suggested at least 20 Cyanidiales OTUs (operational taxono-mic units) worldwide, almost three times the presently recognized seven species. Results from environmental DNA showed that OTUs in the TVG area were divided into three groups: (i) dominant in hot springs with 92%-99% sequence identity to Galdieria maxima; (ii) largely distributed in drier and more acidic microhabitats with 99% identity to G. partita; and (iii) primarily distributed in cooler microhabitats and lacking identity to known cyanidia species (a novel Cyanidiales lineage). In both global and individual area analyses, we observed greater species diversity in non-aquatic than aquatic habitats. Community structure analysis showed high similarity between the TVG community and West Pacific-Iceland communities, reflecting their geographic proximity to each other. Our study is the first examination of the global species diversity and biogeographic affinity of cyanidia. Additionally, our data illuminate the influence of microhabitat type on Cyanidiales diversity and highlight intriguing questions for future ecological research. PMID:26986790

  11. Effect of Habitat Size, Quality, and Isolation on Functional Groups of Beetles in Hollow Oaks.

    PubMed

    Pilskog, Hanne Eik; Birkemoe, Tone; Framstad, Erik; Sverdrup-Thygeson, Anne

    2016-01-01

    One of the largest threats to biodiversity is land use change and habitat loss. Hollow oaks (Quercus spp. L.) are well-defined patches that are hotspots for biodiversity and red-listed species, but they are often rare and fragmented in the landscape. We investigated the effect of patch size, habitat quality, and isolation on functional groups and red-listed saproxylic beetles in hollow oaks (n = 40) in Norway. The groups were defined by host tree association, trophic grouping, and red-listed status. Habitat quality, represented by tree form was most important in explaining species richness for most groups. Patch size, represented by circumference and amount of dead branches, was most important in explaining abundance. Isolation, that is single oaks compared with oaks in groups, had a negative effect on the abundance of beetles feeding both on wood and fungi (xylomycethopagous), as well as on species associated with broadleaved trees (oak semi-specialists), but did not affect species richness. This indicates that at this scale and in this landscape, isolated oaks are as species rich and valuable for conservation as other oaks, although some functional groups may be more vulnerable to isolation than others. The red-listed species only responded to patch size, indicating that oaks with large circumference and many dead branches are especially important for red-listed species and for conservation. PMID:26945089

  12. Effect of Habitat Size, Quality, and Isolation on Functional Groups of Beetles in Hollow Oaks

    PubMed Central

    Pilskog, Hanne Eik; Birkemoe, Tone; Framstad, Erik; Sverdrup-Thygeson, Anne

    2016-01-01

    One of the largest threats to biodiversity is land use change and habitat loss. Hollow oaks (Quercus spp. L.) are well-defined patches that are hotspots for biodiversity and red-listed species, but they are often rare and fragmented in the landscape. We investigated the effect of patch size, habitat quality, and isolation on functional groups and red-listed saproxylic beetles in hollow oaks (n = 40) in Norway. The groups were defined by host tree association, trophic grouping, and red-listed status. Habitat quality, represented by tree form was most important in explaining species richness for most groups. Patch size, represented by circumference and amount of dead branches, was most important in explaining abundance. Isolation, that is single oaks compared with oaks in groups, had a negative effect on the abundance of beetles feeding both on wood and fungi (xylomycethopagous), as well as on species associated with broadleaved trees (oak semi-specialists), but did not affect species richness. This indicates that at this scale and in this landscape, isolated oaks are as species rich and valuable for conservation as other oaks, although some functional groups may be more vulnerable to isolation than others. The red-listed species only responded to patch size, indicating that oaks with large circumference and many dead branches are especially important for red-listed species and for conservation. PMID:26945089

  13. iRED analysis of TAR RNA reveals motional coupling, long-range correlations, and a dynamical hinge.

    PubMed

    Musselman, Catherine; Al-Hashimi, Hashim M; Andricioaei, Ioan

    2007-07-15

    The HIV-1 transactivation response RNA element (TAR), which is essential to the lifecycle of the virus, has been suggested, based on NMR and hydrodynamic measurements, to undergo substantial, collective, structural dynamics that are important for its function. To deal with the significant coupling between overall diffusional rotation and internal motion expected to exist in TAR, here we utilize an isotropic reorientational eigenmode dynamics analysis of simulated molecular trajectories to obtain a detailed description of TAR dynamics and an accurately quantified pattern of dynamical correlations. The analysis demonstrates the inseparability of internal and overall motional modes, confirms the existence and reveals the nature of collective domain dynamics, and additionally reveals that the hinge for these motions is centered on residues U23, C24, and C41. Results also indicate the existence of long-range communication between the loop and the core of the RNA, and between the loop and the bulge. Additionally, the isotropic reorientational eigenmode dynamics analysis explains, from a dynamical perspective, several existing biochemical mutational studies and suggests new mutations for future structural dynamics studies. PMID:17449677

  14. Aroma potential of oak battens prepared from decommissioned oak barrels.

    PubMed

    Li, Sijing; Crump, Anna M; Grbin, Paul R; Cozzolino, Daniel; Warren, Peter; Hayasaka, Yoji; Wilkinson, Kerry L

    2015-04-01

    During barrel maturation, volatile compounds are extracted from oak wood and impart aroma and flavor to wine, enhancing its character and complexity. However, barrels contain a finite pool of extractable material, which diminishes with time. As a consequence, most barrels are decommissioned after 5 or 6 years. This study investigated whether or not decommissioned barrels can be "reclaimed" and utilized as a previously untapped source of quality oak for wine maturation. Oak battens were prepared from staves of decommissioned French and American oak barrels, and their composition analyzed before and after toasting. The oak lactone glycoconjugate content of untoasted reclaimed oak was determined by liquid chromatography-tandem mass spectrometry, while the concentrations of cis- and trans-oak lactone, guaiacol, 4-methlyguaiacol, vanillin, eugenol, furfural, and 5-methylfurfural present in toasted reclaimed oak were determined by gas chromatography-mass spectrometry. Aroma potential was then evaluated by comparing the composition of reclaimed oak with that of new oak. Comparable levels of oak lactone glycoconjugates and oak volatiles were observed, demonstrating the aroma potential of reclaimed oak and therefore its suitability as a raw material for alternative oak products, i.e., chips or battens, for the maturation of wine. The temperature profiles achieved during toasting were also measured to evaluate the viability of any yeast or bacteria present in reclaimed oak. PMID:25771908

  15. Analysis of oak tannins by liquid chromatography-electrospray ionisation mass spectrometry.

    PubMed

    Mämmelä, P; Savolainen, H; Lindroos, L; Kangas, J; Vartiainen, T

    2000-09-01

    Extractable tannins were analysed by liquid chromatography-electrospray ionisation mass spectrometry in two oak species, North American white oak (Quercus alba) and European red oak (Quercus robur). They mainly included various glucose gallic and ellagic acid esters. The structures were partially determined, and they included grandinin/roburin E, castalagin/vescalagin, gallic acid, valoneic acid bilactone, monogalloyl glucose, digalloyl glucose, trigalloyl glucose, ellagic acid rhamnose, quercitrin and ellagic acid. PMID:10999626

  16. Analysis of novel sph (spherocytosis) alleles in mice reveals allele-specific loss of band 3 and adducin in α-spectrin–deficient red cells

    PubMed Central

    Robledo, Raymond F.; Lambert, Amy J.; Birkenmeier, Connie S.; Cirlan, Marius V.; Cirlan, Andreea Flavia M.; Campagna, Dean R.; Lux, Samuel E.

    2010-01-01

    Five spontaneous, allelic mutations in the α-spectrin gene, Spna1, have been identified in mice (spherocytosis [sph], sph1J, sph2J, sph2BC, sphDem). All cause severe hemolytic anemia. Here, analysis of 3 new alleles reveals previously unknown consequences of red blood cell (RBC) spectrin deficiency. In sph3J, a missense mutation (H2012Y) in repeat 19 introduces a cryptic splice site resulting in premature termination of translation. In sphIhj, a premature stop codon occurs (Q1853Stop) in repeat 18. Both mutations result in markedly reduced RBC membrane spectrin content, decreased band 3, and absent β-adducin. Reevaluation of available, previously described sph alleles reveals band 3 and adducin deficiency as well. In sph4J, a missense mutation occurs in the C-terminal EF hand domain (C2384Y). Notably, an equally severe hemolytic anemia occurs despite minimally decreased membrane spectrin with normal band 3 levels and present, although reduced, β-adducin. The severity of anemia in sph4J indicates that the highly conserved cysteine residue at the C-terminus of α-spectrin participates in interactions critical to membrane stability. The data reinforce the notion that a membrane bridge in addition to the classic protein 4.1-p55-glycophorin C linkage exists at the RBC junctional complex that involves interactions between spectrin, adducin, and band 3. PMID:20056793

  17. Proteomics of red and white corolla limbs in petunia reveals a novel function of the anthocyanin regulator ANTHOCYANIN1 in determining flower longevity.

    PubMed

    Prinsi, Bhakti; Negri, Alfredo S; Quattrocchio, Francesca M; Koes, Ronald E; Espen, Luca

    2016-01-10

    The Petunia hybrida ANTHOCYANIN1 (AN1) gene encodes a transcription factor that regulates both the expression of genes involved in anthocyanin synthesis and the acidification of the vacuolar lumen in corolla epidermal cells. In this work, the comparison between the red flowers of the R27 line with the white flowers of the isogenic an1 mutant line W225 showed that the AN1 gene has further pleiotropic effects on flavonoid biosynthesis as well as on distant physiological traits. The proteomic profiling showed that the an1 mutation was associated to changes in accumulation of several proteins, affecting both anthocyanin synthesis and primary metabolism. The flavonoid composition study confirmed that the an1 mutation provoked a broad attenuation of the entire flavonoid pathway, probably by indirect biochemical events. Moreover, proteomic changes and variation of biochemical parameters revealed that the an1 mutation induced a delay in the onset of flower senescence in W225, as supported by the enhanced longevity of the W225 flowers in planta and the loss of sensitivity of cut flowers to sugar. This study suggests that AN1 is possibly involved in the perception and/or transduction of ethylene signal during flower senescence. PMID:26459403

  18. Candidate Gene Screen in the Red Flour Beetle Tribolium Reveals Six3 as Ancient Regulator of Anterior Median Head and Central Complex Development

    PubMed Central

    Hein, Hendrikje Jeannette; Bucher, Gregor

    2011-01-01

    Several highly conserved genes play a role in anterior neural plate patterning of vertebrates and in head and brain patterning of insects. However, head involution in Drosophila has impeded a systematic identification of genes required for insect head formation. Therefore, we use the red flour beetle Tribolium castaneum in order to comprehensively test the function of orthologs of vertebrate neural plate patterning genes for a function in insect head development. RNAi analysis reveals that most of these genes are indeed required for insect head capsule patterning, and we also identified several genes that had not been implicated in this process before. Furthermore, we show that Tc-six3/optix acts upstream of Tc-wingless, Tc-orthodenticle1, and Tc-eyeless to control anterior median development. Finally, we demonstrate that Tc-six3/optix is the first gene known to be required for the embryonic formation of the central complex, a midline-spanning brain part connected to the neuroendocrine pars intercerebralis. These functions are very likely conserved among bilaterians since vertebrate six3 is required for neuroendocrine and median brain development with certain mutations leading to holoprosencephaly. PMID:22216011

  19. Densities of Agrilus auroguttatus and Other Borers in California and Arizona Oaks

    PubMed Central

    Haavik, Laurel J.; Coleman, Tom W.; Flint, Mary Louise; Venette, Robert C.; Seybold, Steven J.

    2014-01-01

    We investigated within-tree population density of a new invasive species in southern California, the goldspotted oak borer, Agrilus auroguttatus Schaeffer (Coleoptera: Buprestidae), with respect to host species and the community of other borers present. We measured emergence hole densities of A. auroguttatus and other borers on the lower stem (bole) of naïve oaks at 18 sites in southern California and on co-evolved oaks at seven sites in southeastern Arizona. We sampled recently dead oaks in an effort to quantify the community of primary and secondary borers associated with mortality—species that were likely to interact with A. auroguttatus. Red oaks (Section Lobatae) produced greater densities of A. auroguttatus than white oaks (Section Quercus). On red oaks, A. auroguttatus significantly outnumbered native borers in California (mean ± SE of 9.6 ± 0.7 versus 4.5 ± 0.6 emergence holes per 0.09 m2 of bark surface), yet this was not the case in Arizona (0.9 ± 0.2 versus 1.1 ± 0.2 emergence holes per 0.09 m2). In California, a species that is taxonomically intermediate between red and white oaks, Quercus chrysolepis (Section Protobalanus), exhibited similar A. auroguttatus emergence densities compared with a co-occurring red oak, Q. kelloggii. As an invasive species in California, A. auroguttatus may affect the community of native borers (mainly Buprestidae and Cerambycidae) that feed on the lower boles of oaks, although it remains unclear whether its impact will be positive or negative. PMID:26462589

  20. Molecular phylogeny of the subfamily Amphistichinae (Teleostei: Embiotocidae) reveals parallel divergent evolution of red pigmentation in two rapidly evolving lineages of sand-dwelling surfperch.

    PubMed

    Westphal, M F; Morey, S R; Uyeda, J C; Morgan, T J

    2011-08-01

    Pigment evolution was reconstructed in the subfamily Amphistichinae, a six-species clade of the surfperches, family Embiotocidae. Assignment was confirmed for all species within the subfamily, but low levels of differentiation were found among species within the subfamily, suggesting a recent radiation. The new phylogeny differs from previous hypotheses by the placement of the spotfin surfperch Hyperprosopon anale at the base of the subfamily, while still preserving the calico surfperch Amphistichus koelzi and the redtailed surfperch Amphistichus rhodoterus as sister species. Phenotypically, A. rhodoterus, A. koelzi and the silver surfperch Hyperprosopon ellipticum express high levels of red pigmentation. The barred surfperch, Amphistichus argenteus and the walleye surfperch Hyperprosopon argenteum express little to no red pigment, while basal H. anale expresses an intermediate amount of red pigment. Red pigmentation is proposed to have experienced parallel divergent evolution in each genus within the subfamily. PMID:21781095

  1. Transcriptome profiling reveals differential gene expression in proanthocyanidin biosynthesis associated with red/green skin color mutant of pear (Pyrus communis L.)

    PubMed Central

    Yang, Yanan; Yao, Gaifang; Yue, Wenquan; Zhang, Shaoling; Wu, Jun

    2015-01-01

    Anthocyanin concentration is the key determinant for red skin color in pear fruit. However, the molecular basis for development of red skin is complicated and has not been well-understood thus far. “Starkrimson” (Pyrus communis L.), an introduced red pear cultivated in the north of China and its green mutant provides a desirable red/green pair for identification of candidate genes involved in color variation. Here, we sequenced and annotated the transcriptome for the red/green color mutant at three stages of development using Illumina RNA-seq technology. The total number of mapped reads ranged from 26 to 46 million in six libraries. About 70.11–71.95% of clean reads could be mapped to the reference genome. Compared with green colored fruit, a total of 2230 differentially expressed genes (DEGs) were identified in red fruit. Gene Ontology (GO) terms were defined for 4886 differential transcripts involved in 15 Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. Three DEGs were identified as candidate genes in the flavonoid pathway, LAR, ANR, and C3H. Tellingly, higher expression was found for genes encoding ANR and LAR in the green color mutant, promoting the proanthocyanidin (PA) pathway and leading to lower anthocyanin. MYB-binding cis-motifs were identified in the promoter region of LAR and ANR. Based on these findings, we speculate that the regulation of PA biosynthesis might be a key factor for this red/green color mutant. Besides the known MYB and MADS transcription families, two new families, AP2 and WRKY, were identified as having high correlation with anthocyanin biosynthesis in red skinned pear. In addition, qRT-PCR was used to confirm the transcriptome results for 17 DEGs, high correlation of gene expression, further proved that AP2 and WARK regulated the anthocyanin biosynthesis in red skinned “Starkrimson,” and ANR and LAR promote PA biosynthesis and contribute to the green skinned variant. This study can serve as a valuable new resource

  2. Phylogeographic, ancient DNA, fossil and morphometric analyses reveal ancient and modern introductions of a large mammal: the complex case of red deer (Cervus elaphus) in Ireland

    NASA Astrophysics Data System (ADS)

    Carden, Ruth F.; McDevitt, Allan D.; Zachos, Frank E.; Woodman, Peter C.; O'Toole, Peter; Rose, Hugh; Monaghan, Nigel T.; Campana, Michael G.; Bradley, Daniel G.; Edwards, Ceiridwen J.

    2012-05-01

    The problem of how and when the island of Ireland attained its contemporary fauna has remained a key question in understanding Quaternary faunal assemblages. We assessed the complex history and origins of the red deer (Cervus elaphus) in Ireland using a multi-disciplinary approach. Mitochondrial sequences of contemporary and ancient red deer (dating from c 30,000 to 1700 cal. yr BP) were compared to decipher possible source populations of red deer in Ireland, in addition to craniometric analyses of skulls from candidate regions to distinguish between different colonization scenarios. Radiocarbon dating was undertaken on all bone fragments that were previously undated. Finally, a comprehensive review of the scientific literature, unpublished reports and other sources of data were also searched for red deer remains within Irish palaeontological and archaeological contexts. Despite being present in Ireland prior to the Last Glacial Maximum (LGM), there is a notable scarcity of red deer from the Younger Dryas stadial period until the Neolithic. The presence of red deer in Irish archaeological sites then occurs more frequently relative to other species. One population in the southwest of Ireland (Co. Kerry) shared haplotypes with the ancient Irish specimens and molecular dating and craniometric analysis suggests its persistence in Ireland since the Neolithic period. The synthesis of the results from this multi-disciplinary study all indicate that red deer were introduced by humans during the Irish Neolithic period and that one of these populations persists today. In conjunction with recent results from other species, Neolithic people from Ireland's nearest landmass, Britain, played a vital role in establishing its contemporary fauna and flora.

  3. Freshwater on the route of hominids "out of Africa" during the last interglacial revealed by U-Th in northern Red Sea fossil reefs

    NASA Astrophysics Data System (ADS)

    Lazar, B.; Stein, M.; Agnon, A.; Shaked, Y.

    2012-04-01

    The migration of Anatomically Modern Hominids (AMH) "out of Africa" is a fundamental problem in the study of human culture concerning that the route passed through the presently hyperarid deserts surrounding the Red Sea. Here, we outline the evidence for significant presence of freshwater in a well developed phreatic coastal aquifer along the Red Sea shores during the last interglacial period. The fringing coral reefs were tectonically uplifted through the freshwater lens resulting in extensive recrystallization of reef framework from the primary aragonite into calcite. We developed a novel open-system U-Th dating methodology that enabled us estimating two ages for the calcitic reef terrace: 1. The original age of the reef terrace, deposited at ~190 ka BP; and 2. the time of freshwater recrystallization (from the primary aragonite into calcite) at ~140 ka BP. The age of freshwater recrystallization is consistent with other geological lines of evidence placing the time of AMH migration "out of Africa" at the onset of the last interglacial. It is likely therefore that during that time the hyperarid Red Sea area was wetter than today facilitating the migration of AMH to Europe and Asia.

  4. Cicadomorpha insects associated with bacterial leaf scorch infected oak in central New Jersey.

    PubMed

    Zhang, Jianxin; Lashomb, James; Gould, Ann; Hamilton, George

    2011-10-01

    Potential insect vectors for transmission of oak leaf scorch caused by Xylella fastidiosa Wells et al., in pin and red oaks in New Jersey were surveyed by placing yellow sticky card traps in tree canopies and fogging with pyrethrin insecticide during 2002-2006. Thirty-seven Cicadomorpha species were collected from 20 genera in Membracidae, Cicadellidae, Aphrophoridae, and Clastopteridae. Of the 12,880 potential vectors collected, 91.4% were Membracidae, 6.9% were Cicadellidae, and 1.7% were Aphrophoridae and Clastopteridae. Fogging collected more insect species and individuals than sticky card collections. Sticky card sampling, done more frequently and at a larger number of locations provided similar community structure information as fogging. Sticky card collections of the dominant treehopper species, Ophiderma definita Woodruff were male biased when females were gravid. O. definita populations peaked in early June, comprised 68.2% of the total collection, and were more abundant in pin oaks than red oaks. Graphocephala versuta (Say) peaked in mid-July, comprising 6.2% of the total collection. Higher Cicadomorpha populations were observed in asymptomatic oak canopies than in neighboring X. fastidiosa infected oaks. Individual insect specimens collected from oaks were subjected to a X. fastidiosa DNA assay by polymerase chain reaction amplification. The average X. fastidiosa positive rate was 13.89% for all specimens tested. Eleven treehopper species, six leafhopper species, and four spittlebug species tested DNA positive for X. fastidiosa. PMID:22251725

  5. The origin of the unusual Qy red shift in LH1-RC complexes from purple bacteria Thermochromatium tepidum as revealed by Stark absorption spectroscopy.

    PubMed

    Ma, Fei; Yu, Long-Jiang; Wang-Otomo, Zheng-Yu; van Grondelle, Rienk

    2015-12-01

    Native LH1-RC of photosynthetic purple bacteria Thermochromatium (Tch.) tepidum, B915, has an ultra-red BChl a Qy absorption. Two blue-shifted complexes obtained by chemical modification, B893 and B882, have increasing full widths at half maximum (FWHM) and decreasing transition dipole oscillator strength. 77K Stark absorption spectroscopy studies were employed for the three complexes, trying to understand the origin of the 915 nm absorption. We found that Tr(∆α) and |∆μ| of both Qy and carotenoid (Car) bands are larger than for other purple bacterial LH complexes reported previously. Moreover, the red shifts of the Qy bands are associated with (1) increasing Tr(∆α) and |∆μ| of the Qy band, (2) the red shift of the Car Stark signal and (3) the increasing |∆μ| of the Car band. Based on the results and the crystal structure, a combined effect of exciton-charge transfer (CT) states mixing, and inhomogeneous narrowing of the BChl a site energy is proposed to be the origin of the 915 nm absorption. CT-exciton state mixing has long been found to be the origin of strong Stark signal in LH1 and special pair, and the more extent of the mixing in Tch. tepidum LH1 is mainly the consequence of the shorter BChl-BChl distances. The less flexible protein structure results in a smaller site energy disorder (inhomogeneous narrowing), which was demonstrated to be able to influence |∆μ| and absorption. PMID:26341015

  6. A Crystallographic Study of Bright Far-Red Fluorescent Protein mKate Reveals pH-induced cis-trans Isomerization of the Chromophore

    SciTech Connect

    Pletnev, Sergei; Shcherbo, Dmitry; Chudakov, Dmitry M.; Pletneva, Nadezhda; Merzlyak, Ekaterina M.; Wlodawer, Alexander; Dauter, Zbigniew; Pletnev, Vladimir

    2008-11-03

    The far-red fluorescent protein mKate {lambda}{sup ex}, 588 nm; {lambda}{sub em}, 635 nm; chromophore-forming triad Met{sup 63}-Tyr{sup 64}-Gly{sup 65}, originating from wild-type red fluorescent progenitor eqFP578 (sea anemone Entacmaea quadricolor), is monomeric and characterized by the pronounced pH dependence of fluorescence, relatively high brightness, and high photostability. The protein has been crystallized at a pH ranging from 2 to 9 in three space groups, and four structures have been determined by x-ray crystallography at the resolution of 1.75--2.6 {angstrom}. The pH-dependent fluorescence of mKate has been shown to be due to reversible cis-trans isomerization of the chromophore phenolic ring. In the non-fluorescent state at pH 2.0, the chromophore of mKate is in the trans-isomeric form. The weakly fluorescent state of the protein at pH 4.2 is characterized by a mixture of trans and cis isomers. The chromophore in a highly fluorescent state at pH 7.0/9.0 adopts the cis form. Three key residues, Ser{sup 143}, Leu{sup 174}, and Arg{sup 197} residing in the vicinity of the chromophore, have been identified as being primarily responsible for the far-red shift in the spectra. A group of residues consisting of Val{sup 93}, Arg{sup 122}, Glu{sup 155}, Arg{sup 157}, Asp{sup 159}, His{sup 169}, Ile{sup 171}, Asn{sup 173}, Val{sup 192}, Tyr{sup 194}, and Val{sup 216}, are most likely responsible for the observed monomeric state of the protein in solution.

  7. Learning experiences at Oak Ridge

    SciTech Connect

    White, R.K.

    1990-01-01

    The Oak Ridge Operations (ORO) of DOE has organized an Environmental Restoration Program to handle environmental cleanup activitis for the Oak Ridge Reservation (ORR) following General Watkins' reorganization at DOE Headquarters. Based on the major facilities and locations of contamination sites, the Environmental Restoration Program is divided into five subprograms: Oak Ridge, National Laboatory (ORNL) sites, y-12 Plant sites, Oak Ridge Gaseous Diffusion Plant (ORGDP) sites, Oak Ridge Associated Universities (ORAU) sites and off-site areas. The Office of Risk Analysis at ORNL was established under the auspices of the Environmental Restoration Program to implement Superfun legislation in the five subprograms of DOE-ORO. Risk assessment must examine protetial human health and ecological impacts from contaminant sources that range from highly radioactive materials to toxic chemicals and mixed wastes. The remedial alternatives we are evaluating need to reach acceptable levels of risk effectively while also being cost-efficient. The purpose of this paper is to highlight areas of particular interest and concern at Oak Ridge and to discuss, where possible, solutions implemented by the Oak Ridge Environmental Restoation Program.

  8. Eye redness

    MedlinePlus

    Bloodshot eyes; Red eyes; Scleral infection; Conjunctival infection ... There are many causes of a red eye or eyes. Some are medical emergencies and some are a cause for concern, but not an emergency. Others are nothing to worry about. ...

  9. Red Clover

    MedlinePlus

    ... 17):2057–2071. Red clover. Natural Medicines Comprehensive Database Web site. Accessed at www.naturaldatabase.com on July 22, 2009. Red clover ( Trifolium pratense ). Natural Standard Database Web site. Accessed at www.naturalstandard.com on July ...

  10. Red clover

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Red clover (Trifolium pratense L.) is an important forage legume grown on approximately 4 million hectares worldwide. An estimated 2.8 million kg of red clover seed per year was produced worldwide in 2005-2007. This amount of seed would be enough to maintain approximately 4 million hectares of red...

  11. Red Sea

    Atmospheric Science Data Center

    2013-04-16

    article title:  The Red Sea     View Larger Image ... Imaging SpectroRadiometer (MISR) image of the Red Sea was acquired on August 13, 2000. Located between the East African coast and the Saudi Arabian peninsula, the Red Sea got its name because the blooms of a type of algae,  Trichodesmium ...

  12. Poison Ivy, Oak, and Sumac

    MedlinePlus

    ... U.S.) is a delayed allergic reaction. Brushing the plant on the skin results in blisters and slightly ... of poison ivy, poison oak, and poison sumac plants. People typically have itchy bumps (papules) and blisters ( ...

  13. Evidence for the stochastic independence of the blue-yellow, red-green and luminance detection mechanisms revealed by subthreshold summation.

    PubMed

    Mullen, K T; Sankeralli, M J

    1999-02-01

    We investigated the manner in which the outputs of the three postreceptoral mechanisms (red-green, blue-yellow and luminance) combine to determine contrast threshold. We used a subthreshold summation paradigm to test whether the combination of the postreceptoral mechanism outputs could be described by a probability summation model which assumes stochastic independence of the mechanisms, and determined the best fitting summation exponent. Stimuli were Gaussian enveloped 1 c/d sinusoidal gratings represented in a 3D cardinal space transformed from cone contrast axes, and normalized to detection threshold. The use of this space avoids the presence of elongated threshold contours, allowing a reliable model fit to include the less sensitive blue-yellow and luminance mechanisms. Our results were well fitted by the probability summation model and hence support the underlying stochastic independence of the three postreceptoral mechanisms. PMID:10341960

  14. Identification of the Bombyx red egg gene reveals involvement of a novel transporter family gene in late steps of the insect ommochrome biosynthesis pathway.

    PubMed

    Osanai-Futahashi, Mizuko; Tatematsu, Ken-ichiro; Yamamoto, Kimiko; Narukawa, Junko; Uchino, Keiro; Kayukawa, Takumi; Shinoda, Tetsuro; Banno, Yutaka; Tamura, Toshiki; Sezutsu, Hideki

    2012-05-18

    Ommochromes are one of the major pigments involved in coloration of eggs, eyes, and body surface of insects. However, the molecular mechanisms of the final steps of ommochrome pigment synthesis have been largely unknown. The eggs of the silkworm Bombyx mori contain a mixture of ommochrome pigments, and exhibit a brownish lilac color. The recessive homozygous of egg and eye color mutant, red egg (re), whose eggs display a pale orange color instead of normal dark coloration, has been long suggested to have a defect in the biosynthesis of the final ommochrome pigments. Here, we identify the gene responsible for the re locus by positional cloning, mutant analysis, and RNAi experiments. In the re mutants, we found that a 541-bp transposable element is inserted into the ORF of BGIBMGA003497-1 (Bm-re) encoding a novel member of a major facilitator superfamily transporter, causing disruption of the splicing of exon 9, resulting in two aberrant transcripts with frameshifts yielding nonfunctional proteins lacking the C-terminal transmembrane domains. Bm-re function in pigmentation was confirmed by embryonic RNAi experiments. Homologs of the Bm-re gene were found in all insect genomes sequenced at present, except for 12 sequenced Drosophila genomes, which seemed to correlate with the previous studies that have demonstrated that eye ommochrome composition is different from other insects in several Dipterans. Knockdown of the Bm-re homolog by RNAi in the red flour beetle Tribolium castaneum caused adult compound eye coloration defects, indicating a conserved role in ommochrome pigment biosynthesis at least among holometabolous insects. PMID:22474291

  15. The green valley is a red herring: Galaxy Zoo reveals two evolutionary pathways towards quenching of star formation in early- and late-type galaxies

    NASA Astrophysics Data System (ADS)

    Schawinski, Kevin; Urry, C. Megan; Simmons, Brooke D.; Fortson, Lucy; Kaviraj, Sugata; Keel, William C.; Lintott, Chris J.; Masters, Karen L.; Nichol, Robert C.; Sarzi, Marc; Skibba, Ramin; Treister, Ezequiel; Willett, Kyle W.; Wong, O. Ivy; Yi, Sukyoung K.

    2014-05-01

    We use SDSS+GALEX+Galaxy Zoo data to study the quenching of star formation in low-redshift galaxies. We show that the green valley between the blue cloud of star-forming galaxies and the red sequence of quiescent galaxies in the colour-mass diagram is not a single transitional state through which most blue galaxies evolve into red galaxies. Rather, an analysis that takes morphology into account makes clear that only a small population of blue early-type galaxies move rapidly across the green valley after the morphologies are transformed from disc to spheroid and star formation is quenched rapidly. In contrast, the majority of blue star-forming galaxies have significant discs, and they retain their late-type morphologies as their star formation rates decline very slowly. We summarize a range of observations that lead to these conclusions, including UV-optical colours and halo masses, which both show a striking dependence on morphological type. We interpret these results in terms of the evolution of cosmic gas supply and gas reservoirs. We conclude that late-type galaxies are consistent with a scenario where the cosmic supply of gas is shut off, perhaps at a critical halo mass, followed by a slow exhaustion of the remaining gas over several Gyr, driven by secular and/or environmental processes. In contrast, early-type galaxies require a scenario where the gas supply and gas reservoir are destroyed virtually instantaneously, with rapid quenching accompanied by a morphological transformation from disc to spheroid. This gas reservoir destruction could be the consequence of a major merger, which in most cases transforms galaxies from disc to elliptical morphology, and mergers could play a role in inducing black hole accretion and possibly active galactic nuclei feedback.

  16. Response of the Sensory animal-like cryptochrome aCRY to blue and red light as revealed by infrared difference spectroscopy.

    PubMed

    Spexard, Meike; Thöing, Christian; Beel, Benedikt; Mittag, Maria; Kottke, Tilman

    2014-02-18

    Cryptochromes act as blue light sensors in plants, insects, fungi, and bacteria. Recently, an animal-like cryptochrome (aCRY) was identified in the green alga Chlamydomonas reinhardtii by which gene expression is altered in response to not only blue light but also yellow and red light. This unique response of a flavoprotein in vivo has been attributed to the fact that the neutral radical of the flavin chromophore acts as dark form of the sensor, which absorbs in almost the entire visible spectral range (<680 nm). Here, we investigated light-induced processes in the protein moiety of full-length aCRY by UV-vis and Fourier transform infrared spectroscopy. Findings are compared to published results on the homologous (6-4) photolyases, DNA repair enzymes. The oxidized state of aCRY is converted to the neutral radical by blue light. The recovery is strongly dependent on pH and might be catalyzed by a conserved histidine of the (6-4)/clock cluster. The decay is independent of oxygen concentration in contrast to that of other cryptochromes and (6-4) photolyases. This blue light reaction of the oxidized flavin is not accompanied by any detectable changes in secondary structure, in agreement with a role in vivo of an unphysiological preactivation. In contrast, the conversion by red light of the neutral radical to the anionic fully reduced state proceeds with conformational changes in turn elements, which most probably constitute a part of the signaling process. These changes have not been detected in the corresponding transition of (6-4) photolyase, which points to a decisive difference between the sensor and the enzyme. PMID:24467183

  17. On the replacement of the red squirrel in Britain: a phytotoxic explanation.

    PubMed

    Kenward, R E; Holm, J L

    1993-03-22

    Diffusion modelling has shown that conservative demographic traits combined with feeding competition could explain red squirrel replacement by grey squirrels. We used field data from seven separate red and grey squirrel populations, in oak-hazel woods and Scots pines, to reject the hypothesis that red squirrel density and breeding is intrinsically poorer than that of grey squirrels. In oak-hazel woods, grey squirrel foraging, density and productivity were related to oak and acorn abundance. In contrast, red squirrels foraged where hazels were abundant; their relatively low density and breeding success were related to the abundance of hazel nuts. Red squirrels failed to exploit good acorn crops, although acorns were more abundant than hazels, but in Scots pines had densities and breeding success as high as grey squirrels in deciduous woods. Captive grey squirrels thrived on a diet of acorns, but red squirrels had a comparative digestive efficiency of only 59%, apparently because they were much less able than grey squirrels to neutralize acorn polyphenols. A model with simple competition for the autumn hazel crop, which was eaten by grey squirrels before the acorn crop, shows that red squirrels are unlikely to persist with grey squirrels in woods with more than 14% oak canopy. With oaks in most British deciduous woods giving grey squirrels a food refuge which red squirrels fail to exploit, replacement of red squirrels can be explained by feeding competition alone, exacerbated by the post-war decline in coppiced hazel. PMID:8097326

  18. Sulfate dry deposition to red oak and tulip poplar leaves

    SciTech Connect

    Vandenberg, J.J. ); Knoerr, K.R. )

    1988-01-01

    Measurement of rates of atmospheric sulfate dry deposition to vegetation is necessary to assess biophysical relationships. However, micrometeorological measurement techniques have stringent site and equipment requirements and direct estimation techniques have procedural and contamination difficulties. This paper describes the development and testing of a leaf washing technique to directly measure the rate of sulfate dry deposition to hardwood forest vegetation. The leaf washing technique was developed by comparing the rate of removal of sulfur dry deposited to leaf surfaces with the rate and extent of leaching from the internal sulfur pool.

  19. Removal of Divalent Cations Induces Structural Transitions in Red Clover Necrotic Mosaic Virus, Revealing a Potential Mechanism for RNA Release▿†

    PubMed Central

    Sherman, Michael B.; Guenther, Richard H.; Tama, Florence; Sit, Tim L.; Brooks, Charles L.; Mikhailov, Albert M.; Orlova, Elena V.; Baker, Timothy S.; Lommel, Steven A.

    2006-01-01

    The structure of Red clover necrotic mosaic virus (RCNMV), an icosahedral plant virus, was resolved to 8.5 Å by cryoelectron microscopy. The virion capsid has prominent surface protrusions and subunits with a clearly defined shell and protruding domains. The structures of both the individual capsid protein (CP) subunits and the entire virion capsid are consistent with other species in the Tombusviridae family. Within the RCNMV capsid, there is a clearly defined inner cage formed by complexes of genomic RNA and the amino termini of CP subunits. An RCNMV virion has approximately 390 ± 30 Ca2+ ions bound to the capsid and 420 ± 25 Mg2+ ions thought to be in the interior of the capsid. Depletion of both Ca2+ and Mg2+ ions from RCNMV leads to significant structural changes, including (i) formation of 11- to 13-Å-diameter channels that extend through the capsid and (ii) significant reorganization within the interior of the capsid. Genomic RNA within native capsids containing both Ca2+ and Mg2+ ions is extremely resistant to nucleases, but depletion of both of these cations results in nuclease sensitivity, as measured by a significant reduction in RCNMV infectivity. These results indicate that divalent cations play a central role in capsid dynamics and suggest a mechanism for the release of viral RNA in low-divalent-cation environments such as those found within the cytoplasm of a cell. PMID:16920821

  20. The morphology of the sub-giant branch and red clump reveal no sign of age spreads in intermediate-age clusters

    NASA Astrophysics Data System (ADS)

    Bastian, N.; Niederhofer, F.

    2015-04-01

    A recent surprise in stellar cluster research, made possible through the precision of Hubble Space Telescope photometry, was that some intermediate-age (1-2 Gyr) clusters in the Large and Small Magellanic Clouds have main-sequence turn-off (MSTO) widths that are significantly broader than would be expected for a simple stellar population (SSP). One interpretation of these extended MSTOs (eMSTOs) is that age spreads of the order of ˜500 Myr exist within the clusters, radically redefining our view of stellar clusters, which are traditionally thought of as single-age, single-metallicity stellar populations. Here we test this interpretation by studying other regions of the CMD that should also be affected by such large age spreads, namely the width of the sub-giant branch (SGB) and the red clump (RC). We study two massive clusters in the LMC that display the eMSTO phenomenon (NGC 1806 and NGC 1846) and show that both have SGB and RC morphologies that are in conflict with expectations if large age spreads exist within the clusters. We conclude that the SGB and RC widths are inconsistent with extended star formation histories within these clusters, hence age spreads are not likely to be the cause of the eMSTO phenomenon. Our results are in agreement with recent studies that also have cast doubt on whether large age spreads can exist in massive clusters; namely the failure to find age spreads in young massive clusters, a lack of gas/dust detected within massive clusters, and homogeneous abundances within clusters that exhibit the eMSTO phenomenon.

  1. QTL analysis of a red junglefowl x White Leghorn intercross reveals trade-off in resource allocation between behavior and production traits.

    PubMed

    Schütz, Karin; Kerje, Susanne; Carlborg, Orjan; Jacobsson, Lina; Andersson, Leif; Jensen, Per

    2002-11-01

    Behaviors with high energetic costs may decrease in frequency in domestic animals as a response to selection for increased production. The aim of this study was to quantify production traits, foraging behavior, and social motivation in F2 progeny from a White Leghorn x red junglefowl intercross (n = 751-1046) and to perform QTL analyses on the behavioral traits. A foraging-social maze was used for behavioral testing, which consisted of four identical arms and a central box. In two arms there was ad libitum access to the birds' usual food, and in the other two there was novel food (sunflower seeds) mixed with cat litter. In one arm with each of the two food sources, social stimuli were simulated by the presence of a mirror. Each bird could therefore feed on novel or well known food either alone or in the perceived company of a conspecific. Egg production, sexual maturity (females), food intake, and growth were measured individually, and residual food intake and metabolic body weight were estimated using standard methods. A genome scan using 104 microsatellite markers was carried out to identify QTLs affecting behavioral traits. Phenotypic growth rates at different ages showed weak associations in both sexes. Sexual maturity and egg weight were not strongly correlated to growth, indicating that these traits are not genetically linked. Time spent in each arm and in the central part of the maze was analyzed using principal component analyses. Four principal components (PC) were extracted, each reflecting a pattern of behavior in the maze. Females with early onset of sexual maturity scored higher on the PC1 reflecting preference for free food without social stimuli, and females with higher egg production scored higher on the PC2 reflecting exploration. Males with an overall higher growth rate and higher residual food intake scored higher on the PC3, which possibly reflected fear of the test situation, and tended to score higher on the PC4 reflecting low

  2. Variability in splanchnic tissue oxygenation during preterm red blood cell transfusion given for symptomatic anaemia may reveal a potential mechanism of transfusion-related acute gut injury

    PubMed Central

    Bailey, Sean M.; Hendricks-Muñoz, Karen D.; Mally, Pradeep V.

    2015-01-01

    Background There is increasing evidence indicating an association between red blood cell (RBC) transfusions and necrotising enterocolitis (NEC) in preterm infants, especially late-onset NEC. This phenomenon is referred to as transfusion-related acute gut injury (TRAGI). One theory as to a pathophysiological mechanism is that transfusion may result in an ischemia-reperfusion injury to intestinal tissue. We tested the hypothesis that there is significantly greater variability during transfusion in splanchnic tissue oxygen saturation (SrSO2) than in cerebral tissue oxygen saturation (CrSO2). Materials and methods This was a prospective, observational study using near-infrared spectroscopy to monitor SrSO2 and CrSO2 in preterm neonates undergoing RBC transfusion for symptomatic anaemia. Mean, standard deviation, highest and lowest SrSO2 and CrSO2 values during each transfusion were determined. The greatest difference in SrSO2 and CrSO2 during each transfusion was calculated, along with the coefficient of variation. Results We studied 37 subjects. Throughout all transfusions, the mean SrSO2 was 45.6% ±13.8 and the mean CrSO2 was 65.4% ±6.9 (p<0.001). The variability of SrSO2 was significantly greater than that of CrSO2. Averaging data from all subjects, the greatest difference in SrSO2 was 43.8% ±13.4 compared with 23.3% ±7.6 for CrSO2 (p<0.001). The mean coefficient of variation in all transfusions was 20.5% for SrSO2 and 6.0% for CrSO2 (p<0.001). Increasing post-conceptional age did not affect SrSO2 variability (R2 =0.022; p=0.379), whereas CrSO2 variability during transfusion decreased with increasing post-conceptional age (R2=0.209; p=0.004). Discussion In preterm infants, there is a large degree of tissue oxygenation variability in splanchnic tissue during RBC transfusion and this does not change with increasing maturity. We speculate that these findings, combined with lower average tissue oxygenation, may demonstrate susceptibility of the preterm gut to TRAGI

  3. 77 FR 23506 - Notice of Inventory Completion: The Region of Three Oaks Museum, Three Oaks, MI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-19

    ... National Park Service Notice of Inventory Completion: The Region of Three Oaks Museum, Three Oaks, MI AGENCY: National Park Service, Interior. ACTION: Notice. SUMMARY: The Region of Three Oaks Museum has... contact The Region of Three Oaks Museum. Repatriation of the human remains to the Indian tribe...

  4. Red Sky with Red Mesa

    SciTech Connect

    2011-04-14

    The Red Sky/Red Mesa supercomputing platform dramatically reduces the time required to simulate complex fuel models, from 4-6 months to just 4 weeks, allowing researchers to accelerate the pace at which they can address these complex problems. Its speed also reduces the need for laboratory and field testing, allowing for energy reduction far beyond data center walls.

  5. Red Sky with Red Mesa

    ScienceCinema

    None

    2014-06-23

    The Red Sky/Red Mesa supercomputing platform dramatically reduces the time required to simulate complex fuel models, from 4-6 months to just 4 weeks, allowing researchers to accelerate the pace at which they can address these complex problems. Its speed also reduces the need for laboratory and field testing, allowing for energy reduction far beyond data center walls.

  6. Red Capes, Red Herrings, and Red Flags.

    ERIC Educational Resources Information Center

    Fiske, Donald W.

    The argument that the personality structures obtained from retrospective ratings reflect semantic similarity structures has been as provocative as a red cape in the bull ring. High congruence between those two kinds of structures seems well established. What is less clear is how and why those structures differ from that for immediate judgments of…

  7. Oak Ridge callibration recall program

    SciTech Connect

    Falter, K.G.; Wright, W.E.; Pritchard, E.W.

    1996-12-31

    A development effort was initiated within the Oak Ridge metrology community to address the need for a more versatile and user friendly tracking database that could be used across the Oak Ridge complex. This database, which became known as the Oak Ridge Calibration Recall Program (ORCRP), needed to be diverse enough for use by all three Oak Ridge facilities, as well as the seven calibration organizations that support them. Various practical functions drove the initial design of the program: (1) accessible by any user at any site through a multi-user interface, (2) real-time database that was able to automatically generate e-mail notices of due and overdue measuring and test equipment, (3) large memory storage capacity, and (4) extremely fast data access times. In addition, the program needed to generate reports on items such as instrument turnaround time, workload projections, and laboratory efficiency. Finally, the program should allow the calibration intervals to be modified, based on historical data. The developed program meets all of the stated requirements and is accessible over a network of computers running Microsoft Windows software.

  8. Large drought-induced variations in oak leaf volatile organic compound emissions during PINOT NOIR 2012

    SciTech Connect

    Geron, Chris; Gu, Lianhong; Daly, Ryan; Harley, Peter; Rasmussen, Rei; Seco, Roger; Guenther, Alex; Karl, Thomas

    2015-12-17

    Here, leaf-level isoprene and monoterpene emissions were collected and analyzed from five of the most abundant oak (Quercus) species in Central Missouri's Ozarks Region in 2012 during PINOT NOIR (Particle Investigations at a Northern Ozarks Tower – NOx, Oxidants, Isoprene Research). June measurements, prior to the onset of severe drought, showed isoprene emission rates and leaf temperature responses similar to those previously reported in the literature and used in Biogenic Volatile Organic Compound (BVOC) emission models. During the peak of the drought in August, isoprene emission rates were substantially reduced, and response to temperature was dramatically altered, especially for the species in the red oak subgenus (Erythrobalanus).

  9. Oak Ridge National Laboratory Review

    SciTech Connect

    Krause, C.; Pearce, J.; Zucker, A.

    1992-01-01

    This report presents brief descriptions of the following programs at Oak Ridge National Laboratory: The effects of pollution and climate change on forests; automation to improve the safety and efficiency of rearming battle tanks; new technologies for DNA sequencing; ORNL probes the human genome; ORNL as a supercomputer research center; paving the way to superconcrete made with polystyrene; a new look at supercritical water used in waste treatment; and small mammals as environmental monitors.

  10. Environmental drivers of ectomycorrhizal communities in Europe's temperate oak forests.

    PubMed

    Suz, Laura M; Barsoum, Nadia; Benham, Sue; Dietrich, Hans-Peter; Fetzer, Karl Dieter; Fischer, Richard; García, Paloma; Gehrman, Joachim; Kristöfel, Ferdinand; Manninger, Miklós; Neagu, Stefan; Nicolas, Manuel; Oldenburger, Jan; Raspe, Stephan; Sánchez, Gerardo; Schröck, Hans Werner; Schubert, Alfred; Verheyen, Kris; Verstraeten, Arne; Bidartondo, Martin I

    2014-11-01

    Ectomycorrhizal fungi are major ecological players in temperate forests, but they are rarely used in measures of forest condition because large-scale, high-resolution, standardized and replicated belowground data are scarce. We carried out an analysis of ectomycorrhizas at 22 intensively monitored long-term oak plots, across nine European countries, covering complex natural and anthropogenic environmental gradients. We found that at large scales, mycorrhizal richness and evenness declined with decreasing soil pH and root density, and with increasing atmospheric nitrogen deposition. Shifts in mycorrhizas with different functional traits were detected; mycorrhizas with structures specialized for long-distance transport related differently to most environmental variables than those without. The dominant oak-specialist Lactarius quietus, with limited soil exploration abilities, responds positively to increasing nitrogen inputs and decreasing pH. In contrast, Tricholoma, Cortinarius and Piloderma species, with medium-distance soil exploration abilities, show a consistently negative response. We also determined nitrogen critical loads for moderate (9.5-13.5 kg N/ha/year) and drastic (17 kg N/ha/year) changes in belowground mycorrhizal root communities in temperate oak forests. Overall, we generated the first baseline data for ectomycorrhizal fungi in the oak forests sampled, identified nitrogen pollution as one of their major drivers at large scales and revealed fungi that individually and/or in combination with others can be used as belowground indicators of environmental characteristics. PMID:25277863

  11. Overseas Varietal Analysis 2010 Crop Soft Red Winter Wheat

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The 2010 U.S. Wheat Associates Overseas Varietal Analysis project evaluated ten soft red winter wheat varieties: Jamestown, Merl and Shirley from Virginia; Coker 9553 and Oakes from North Carolina; Baldwin from Georgia; Renegade and DK 9577 from Arkansas; USG 3555 from Tennessee; and, Malabar from O...

  12. Episodic migration of oaks to Iceland: Evidence for a North Atlantic "land bridge" in the latest Miocene.

    PubMed

    Denk, Thomas; Grímsson, Friðgeir; Zetter, Reinhard

    2010-02-01

    Dating the subsidence history of the North Atlantic Land Bridge (NALB) is crucial for understanding intercontinental disjunctions of northern temperate trees. Traditionally, the NALB has been assumed to have functioned as a corridor for plant migration only during the early Cenozoic, but recent findings of plant fossils and inferences from molecular studies are challenging this view. Here, we report dispersed pollen of Quercus from Late Miocene sediments in Iceland that shows affinities with extant northern hemispheric white oaks and North American red oaks. Older (15 to 10 Ma) sediments do not contain pollen of Quercus suggesting it arrived after that time. Pollen from the 9-8 Ma Hrútagil locality is indistinguishable from morphotypes common among white and red oaks. In contrast, pollen from the 5.5 Ma Selárgil locality has a tectum that is at present confined to North American white and red oaks, indicating a second episode of migration to Iceland. These findings suggest that transatlantic migration of temperate plant taxa may not have been limited by vast areas of sea or by cold climates during the Miocene. Furthermore, our results offer a plausible explanation for the remarkably low degree of genetic differentiation between modern disjunct European and North American oaks. PMID:21622388

  13. First Report of Northern Root-Knot Nematode, Meloidogyne hapla, Parasitic on Oaks, Quercus brantii and Q. infectoria in Iran.

    PubMed

    Sohrabi, Effat; Maafi, Zahra Tanha; Panahi, Parisa; Barooti, Shapour

    2015-03-01

    Root-knot nematodes (RKN) are the most serious plant parasitic nematodes having a broad host range exceeding 2,000 plant species. Quercus brantii Lindl. and Q. infectoria Oliv are the most important woody species of Zagros forests in west of Iran where favors sub-Mediterranean climate. National Botanical Garden of Iran (NBGI) is scheduled to be the basic center for research and education of botany in Iran. This garden, located in west of Tehran, was established in 1968 with an area of about 150 ha at altitude of 1,320 m. The Zagros collection has about 3-ha area and it has been designed for showing a small pattern of natural Zagros forests in west of Iran. Brant's oak (Q. brantii) and oak manna tree (Q. infectoria) are the main woody species in Zagros collection, which have been planted in 1989. A nematological survey on Zagros forest collection in NBGI revealed heavily infection of 24-yr-old Q. brantii and Q. infectoria to RKN, Meloidogyne hapla. The roots contained prominent galls along with egg sac on the surface of each gall. The galls were relatively small and in some parts of root several galls were conjugated, and all galls contained large transparent egg masses. The identification of M. hapla was confirmed by morphological and morphometric characters and amplification of D2-D3 expansion segments of 28S rRNA gene. The obtained sequences of large-subunit rRNA gene from M. hapla was submitted to the GenBank database under the accession number KP319025. The sequence was compared with those of M. hapla deposited in GenBank using the BLAST homology search program and showed 99% similarity with those KJ755183, GQ130139, DQ328685, and KJ645428. The second stage juveniles of M. hapla isolated from Brant's oak (Q. Brantii) showed the following morphometric characters: (n = 12), L = 394 ± 39.3 (348 to 450) µm; a = 30.9 ± 4 (24.4 to 37.6); b = 4.6 ± 0.44 (4 to 5.1); b΄ = 3.3 ± 0.3 (2.7 to 3.7), c = 8.0 ± 1 (6.2 to 10.3), ć = 5.3 ± 0.8 (3.5 to 6.3); Stylet = 12

  14. First Report of Northern Root-Knot Nematode, Meloidogyne hapla, Parasitic on Oaks, Quercus brantii and Q. infectoria in Iran

    PubMed Central

    Sohrabi, Effat; Maafi, Zahra Tanha; Panahi, Parisa; Barooti, Shapour

    2015-01-01

    Root-knot nematodes (RKN) are the most serious plant parasitic nematodes having a broad host range exceeding 2,000 plant species. Quercus brantii Lindl. and Q. infectoria Oliv are the most important woody species of Zagros forests in west of Iran where favors sub-Mediterranean climate. National Botanical Garden of Iran (NBGI) is scheduled to be the basic center for research and education of botany in Iran. This garden, located in west of Tehran, was established in 1968 with an area of about 150 ha at altitude of 1,320 m. The Zagros collection has about 3-ha area and it has been designed for showing a small pattern of natural Zagros forests in west of Iran. Brant’s oak (Q. brantii) and oak manna tree (Q. infectoria) are the main woody species in Zagros collection, which have been planted in 1989. A nematological survey on Zagros forest collection in NBGI revealed heavily infection of 24-yr-old Q. brantii and Q. infectoria to RKN, Meloidogyne hapla. The roots contained prominent galls along with egg sac on the surface of each gall. The galls were relatively small and in some parts of root several galls were conjugated, and all galls contained large transparent egg masses. The identification of M. hapla was confirmed by morphological and morphometric characters and amplification of D2-D3 expansion segments of 28S rRNA gene. The obtained sequences of large-subunit rRNA gene from M. hapla was submitted to the GenBank database under the accession number KP319025. The sequence was compared with those of M. hapla deposited in GenBank using the BLAST homology search program and showed 99% similarity with those KJ755183, GQ130139, DQ328685, and KJ645428. The second stage juveniles of M. hapla isolated from Brant’s oak (Q. Brantii) showed the following morphometric characters: (n = 12), L = 394 ± 39.3 (348 to 450) µm; a = 30.9 ± 4 (24.4 to 37.6); b = 4.6 ± 0.44 (4 to 5.1); b΄ = 3.3 ± 0.3 (2.7 to 3.7), c = 8.0 ± 1 (6.2 to 10.3), ć = 5.3 ± 0.8 (3.5 to 6.3); Stylet

  15. Occurrence of treehoppers (Hemiptera: Membracidae: Smiliinae) on oaks in delaware water gap national recreation area, 2004-2006.

    PubMed

    Wallace, Matthew S

    2008-01-01

    A total of 870 treehoppers and 24 species from the tribe Smiliini (Hemiptera: Membracidae: Smiliinae) were collected from various oaks in the Delaware Water Gap National Recreation Area in 2006 using yellow sticky cards. Combining all years and collecting methods, 27 species were found in the park. A majority of the specimens collected in 2006 were males of Cyrtolobus vau and Ophiderma pubescens, as in previous years. Most of the treehoppers were caught in mid to late June, comparable to 2004 and 2005. It appears that many species are segregated either temporally or by oak group; some treehopper species show preference for either the red or white oak group rather than for one species of oak. Color photographs for 27 treehopper species (many including both sexes) are included. PMID:20302540

  16. Occurrence of Treehoppers (Hemiptera: Membracidae: Smiliinae) on Oaks in Delaware Water Gap National Recreation Area, 2004–2006

    PubMed Central

    Wallace, Matthew S.

    2008-01-01

    A total of 870 treehoppers and 24 species from the tribe Smiliini (Hemiptera: Membracidae: Smiliinae) were collected from various oaks in the Delaware Water Gap National Recreation Area in 2006 using yellow sticky cards. Combining all years and collecting methods, 27 species were found in the park. A majority of the specimens collected in 2006 were males of Cyrtolobus vau and Ophiderma pubescens, as in previous years. Most of the treehoppers were caught in mid to late June, comparable to 2004 and 2005. It appears that many species are segregated either temporally or by oak group; some treehopper species show preference for either the red or white oak group rather than for one species of oak. Color photographs for 27 treehopper species (many including both sexes) are included. PMID:20302540

  17. Nitrogen deposition potentially contributes to oak regeneration failure in the Midwestern temperate forests of the USA.

    PubMed

    BassiriRad, Hormoz; Lussenhop, John F; Sehtiya, Harbans L; Borden, Kara K

    2015-01-01

    We conducted a 7-year field study at two oak-dominated forest sites which differ in their atmospheric N deposition to test the hypothesis that red oak regeneration failure in the upper Midwestern US forests, at least in part, results from increased N load. The sites are located in Swallow Cliffs (SC) in Cook County, Illinois, and Indiana Dunes National Lakeshore (IDNL) in Porter County, Indiana. Annual wet NO3(-) deposition for the 22 years immediately prior to the experiments was significantly higher in IDNL than in the SC site. Results from common garden experiments showed that oak seedling biomass was 60% lower at IDNL compared with SC, but there was little site effect on growth of maple seedlings. Experimental N addition also resulted in a 45% decrease in the total biomass of the oak seedlings at SC, but had no significant effect on the biomass at IDNL. Maple seedlings responded little to experimental fertilization. The growth rate of mature oak trees was also lower at IDNL but to a much smaller extent than that of seedlings. Maple trees did not significantly differ between sites. We conclude that: (1) chronic N load adversely affects seedling performance of red oak, but not sugar maple, in these temperate forests; and (2) the seedling establishment phase rather than the adult tree is the likely target stage for this adverse effect of N loading. The exact mechanisms for the differential effects of N on these co-occurring species are not clear, but different plasticity in fractional biomass and N allocation to the leaves might be involved. PMID:25407618

  18. Complex climate controls on 20th century oak growth in Central-West Germany.

    PubMed

    Friedrichs, Dagmar A; Büntgen, Ulf; Frank, David C; Esper, Jan; Neuwirth, Burkhard; Löffler, Jörg

    2009-01-01

    We analyze interannual to multi-decadal growth variations of 555 oak trees from Central-West Germany. A network of 13 pedunculate oak (Quercus robur L.) and 33 sessile oak (Quercus petraea (Matt.) Liebl.) site chronologies is compared with gridded temperature, precipitation, cloud-cover, vapor pressure and drought (i.e., Palmer Drought Severity Index, PDSI) fluctuations. A hierarchic cluster analysis identifies three groups for each oak species differentiated by ecologic settings. When high precipitation is primarily a characteristic for one Q. robur and one Q. petraea cluster, the other clusters are more differentiated by prevailing temperature conditions. Correlation analysis with precipitation and vapor pressure reveals statistically significant (P < or = 0.05) correlations for June (r = 0.51) and annual (r = 0.43) means. Growth of both species at dry sites correlates strongly with PDSI (r = 0.39, P < or = 0.05), and weakly with temperature and cloud-cover. In natural stands, Q. robur responds more strongly to water depletion than Q. petraea. Twenty-one-year moving correlations show positive significant growth response to both PDSI and precipitation throughout the 20th century, except for the 1940s - an anomalously warm decade during which all oak sites are characterized by an increased growth and an enhanced association with vapor pressure and temperature. We suggest that the wider oak rings that are exhibited during this period may be indicative of a nonlinear or threshold-induced growth response to drought and vapor pressure, and run counter to the general response of oak to drought and precipitation that normally would result in suppressed growth in a warmer and drier environment. As the wide rings are formed during the severe drought period of the 20th century, a complex model seems to be required to fully explain the widespread oak growth. Our results indicate uncertainty in estimates of future growth trends of Central European oak forests in a warming and

  19. Old Big Oak Flat Road at intersection with New Tioga ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Old Big Oak Flat Road at intersection with New Tioga Road. Note gate for road to Tamarack Campground - Big Oak Flat Road, Between Big Oak Flat Entrance & Merced River, Yosemite Village, Mariposa County, CA

  20. View of Old Big Oak Flat Road in Talus Slope. ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    View of Old Big Oak Flat Road in Talus Slope. Bridal Veil Falls at center distance. Looking east - Big Oak Flat Road, Between Big Oak Flat Entrance & Merced River, Yosemite Village, Mariposa County, CA

  1. 3. Threequarter view of Oak Creek Bridge behind visitor center ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    3. Three-quarter view of Oak Creek Bridge behind visitor center facing southwest - Oak Creek Administrative Center, One half mile east of Zion-Mount Carmel Highway at Oak Creek, Springdale, Washington County, UT

  2. Occupational poison ivy and oak dermatitis.

    PubMed

    Epstein, W L

    1994-07-01

    Among the growing and diverse groups of outdoor and environmental workers, poison ivy and poison oak continue to be the major cause of occupational contact dermatitis. This article reviews the practical and theoretic means to prevent poison ivy and poison oak dermatitis in workers occupationally exposed to these weeds. PMID:7923948

  3. Sudden Oak Death (Phytophthora ramorum) and lilacs

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In the 1990s, Californians began to notice that native oaks were dying in unusual numbers. By 2001, it was clear that a new pathogen, Phytophthora ramorum, was causing the stem cankers on oaks and foliar lesions and stem dieback on a number of other plants, in the U.S. and in nurseries in Europe. A...

  4. Emergency preparedness at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Skipper, M.N.

    1990-03-01

    Emergency preparedness for industry was commonly believed to be an essential responsibility on the part of management. Therefore, this study was conducted to research and accumulate information and data on emergency preparedness at Oak Ridge National Laboratory (ORNL). The objective of this study was to conduct a thorough evaluation of emergency preparedness knowledge among employees to determine if they were properly informed or if they needed more training. Also, this study was conducted to provide insight to management as to what their responsibility was concerning this training. To assess employee emergency preparedness knowledge, a questionnaire was developed and administered to 100 employees at ORNL. The data was analyzed using frequencies and percentages of response and was displayed through the use of graphs within the report. 22 refs., 22 figs.

  5. Microbial diversity and metabolite composition of Belgian red-brown acidic ales.

    PubMed

    Snauwaert, Isabel; Roels, Sanne P; Van Nieuwerburg, Filip; Van Landschoot, Anita; De Vuyst, Luc; Vandamme, Peter

    2016-03-16

    Belgian red-brown acidic ales are sour and alcoholic fermented beers, which are produced by mixed-culture fermentation and blending. The brews are aged in oak barrels for about two years, after which mature beer is blended with young, non-aged beer to obtain the end-products. The present study evaluated the microbial community diversity of Belgian red-brown acidic ales at the end of the maturation phase of three subsequent brews of three different breweries. The microbial diversity was compared with the metabolite composition of the brews at the end of the maturation phase. Therefore, mature brew samples were subjected to 454 pyrosequencing of the 16S rRNA gene (bacteria) and the internal transcribed spacer region (yeasts) and a broad range of metabolites was quantified. The most important microbial species present in the Belgian red-brown acidic ales investigated were Pediococcus damnosus, Dekkera bruxellensis, and Acetobacter pasteurianus. In addition, this culture-independent analysis revealed operational taxonomic units that were assigned to an unclassified fungal community member, Candida, and Lactobacillus. The main metabolites present in the brew samples were L-lactic acid, D-lactic acid, and ethanol, whereas acetic acid was produced in lower quantities. The most prevailing aroma compounds were ethyl acetate, isoamyl acetate, ethyl hexanoate, and ethyl octanoate, which might be of impact on the aroma of the end-products. PMID:26802571

  6. Integrated transcriptomics and metabolomics decipher differences in the resistance of pedunculate oak to the herbivore Tortrix viridana L.

    PubMed Central

    2013-01-01

    Background The interaction between insect pests and their host plants is a never-ending race of evolutionary adaption. Plants have developed an armament against insect herbivore attacks, and attackers continuously learn how to address it. Using a combined transcriptomic and metabolomic approach, we investigated the molecular and biochemical differences between Quercus robur L. trees that resisted (defined as resistant oak type) or were susceptible (defined as susceptible oak type) to infestation by the major oak pest, Tortrix viridana L. Results Next generation RNA sequencing revealed hundreds of genes that exhibited constitutive and/or inducible differential expression in the resistant oak compared to the susceptible oak. Distinct differences were found in the transcript levels and the metabolic content with regard to tannins, flavonoids, and terpenoids, which are compounds involved in the defence against insect pests. The results of our transcriptomic and metabolomic analyses are in agreement with those of a previous study in which we showed that female moths prefer susceptible oaks due to their specific profile of herbivore-induced volatiles. These data therefore define two oak genotypes that clearly differ on the transcriptomic and metabolomic levels, as reflected by their specific defensive compound profiles. Conclusions We conclude that the resistant oak type seem to prefer a strategy of constitutive defence responses in contrast to more induced defence responses of the susceptible oaks triggered by feeding. These results pave the way for the development of biomarkers for an early determination of potentially green oak leaf roller-resistant genotypes in natural pedunculate oak populations in Europe. PMID:24160444

  7. Hydroforming Applications at Oak Ridge

    SciTech Connect

    bird, e.l.; ludtka, g.m.

    1999-03-10

    Hydroforming technology is a robust forming process that produces components with high precision and complexity. The goal of this paper is to present a brief description of the sheet hydroforming process with respect to the authors' experience and capabilities. Following the authors' discussion of the sheet-metal forming application, the tubular hydroforming process is described in the context of one of our technology development programs with an automotive industrial partner. After that is a summary of the tubular hydroforming advisor (expert system) development activity, which was a significant part of this overall program based on previous experience in developing a design and manufacturing support hydroforming advisor for the Oak Ridge Y-12 Plant's weapons-component manufacturing needs. Therefore, this paper is divided into three sections: (1) Hydroforming of Stainless Steel Parts, (2) Tubular Hydroforming, and (3) Components of a Tubular Hydroforming Advisor.

  8. An Account of Oak Ridge National Laboratory's Thirteen Research Reactors

    SciTech Connect

    Rosenthal, Murray Wilford

    2009-08-01

    The Oak Ridge National Laboratory has built and operated 13 nuclear reactors in its 66-year history. The first was the graphite reactor, the world's first operational nuclear reactor, which served as a plutonium production pilot plant during World War II. It was followed by two aqueous-homogeneous reactors and two red-hot molten-salt reactors that were parts of power-reactor development programs and by eight others designed for research and radioisotope production. One of the eight was an all-metal fast burst reactor used for health physics studies. All of the others were light-water cooled and moderated, including the famous swimming-pool reactor that was copied dozens of times around the world. Two of the reactors were hoisted 200 feet into the air to study the shielding needs of proposed nuclear-powered aircraft. The final reactor, and the only one still operating today, is the High Flux Isotope Reactor (HFIR) that was built particularly for the production of californium and other heavy elements. With the world's highest flux and recent upgrades that include the addition of a cold neutron source, the 44-year-old HFIR continues to be a valuable tool for research and isotope production, attracting some 500 scientific visitors and guests to Oak Ridge each year. This report describes all of the reactors and their histories.

  9. Red ginseng and cancer treatment.

    PubMed

    Wang, Chong-Zhi; Anderson, Samantha; DU, Wei; He, Tong-Chuan; Yuan, Chun-Su

    2016-01-01

    The ginseng family, including Panax ginseng (Asian ginseng), Panax quinquefolius (American ginseng), and Panax notoginseng (notoginseng), is commonly used herbal medicine. White ginseng is prepared by air-drying after harvest, while red ginseng is prepared by a steaming or heating process. The anticancer activity of red ginseng is significantly increased, due to the production of active anticancer ginsenosides during the steaming treatment, compared with that of white ginseng. Thus far, anticancer studies have been mostly focused on Asian ginseng. In this article, we review the research progress made in the anticancer activities of red Asian ginseng, red American ginseng and red notoginseng. The major anticancer mechanisms of red ginseng compounds include cell cycle arrest, induction of apoptosis/paraptosis, and inhibition of angiogenesis. The structure-function relationship analysis has revealed that the protopanaxadiol group ginsenosides have more potent effects than the protopanaxatriol group. Sugar molecules in ginsenosides inversely impact the antiproliferative potential of these compounds. In addition, ginsenoside stereoselectivity and double bond position also influence the anticancer activity. Future studies should focus on characterizing active red ginseng derivatives as potential anticancer drugs. PMID:26850342

  10. Coumarins and phenolic fingerprints of oak and Brazilian woods extracted by sugarcane spirit.

    PubMed

    da Silva, Alexandre Ataide; do Nascimento, Eduardo Sanches Pereira; Cardoso, Daniel Rodrigues; Franco, Douglas Wagner

    2009-11-01

    A total of 25 sugarcane spirit extracts of six different Brazilian woods and oak, commonly used by cooperage industries for aging cachaça, were analyzed for the presence of 14 phenolic compounds (ellagic acid, gallic acid, vanillin, syringaldehyde, synapaldehyde, coniferaldehyde, vanillic acid, syringic acid, quercetin, trans-resveratrol, catechin, epicatechin, eugenol, and myricetin) and two coumarins (scopoletin and coumarin) by HPLC-DAD-fluorescence and HPLC-ESI-MS(n). Furthermore, an HPLC-DAD chromatographic fingerprint was build-up using chemometric analysis based on the chromatographic elution profiles of the extracts monitored at 280 nm. Major components identified and quantified in Brazilian wood extracts were coumarin, ellagic acid, and catechin, whereas oak extracts shown a major contribution of catechin, vanillic acid, and syringaldehyde. The main difference observed among oak and Brazilian woods remains in the concentration of coumarin, catechin, syringaldehyde, and coniferaldehyde. The chemometric analysis of the quantitative profile of the 14 phenolic compounds and two coumarins in the wood extracts provides a differentiation between the Brazilian wood and oak extracts. The chromatographic fingerprint treated by multivariate analysis revealed significant differences among Brazilian woods themselves and oak, clearly defining six groups of wood extracts: (i) oak extracts, (ii) jatobá extracts, (iii) cabreúva-parda extracts, (iv) amendoim extracts, (v) canela-sassafrás extracts and (vi) pequi extracts. PMID:20029907

  11. Seeing Red

    NASA Technical Reports Server (NTRS)

    2008-01-01

    This New Horizons image of Jupiter's volcanic moon Io was taken at 13:05 Universal Time during the spacecraft's Jupiter flyby on February 28, 2007. It shows the reddish color of the deposits from the giant volcanic eruption at the volcano Tvashtar, near the top of the sunlit crescent, as well as the bluish plume itself and the orange glow of the hot lava at its source. The relatively unprocessed image on the left provides the best view of the volcanic glow and the plume deposits, while the version on the right has been brightened to show the much fainter plume, and the Jupiter-lit night side of Io.

    New Horizons' color imaging of Io's sunlit side was generally overexposed because the spacecraft's color camera, the super-sensitive Multispectral Visible Imaging Camera (MVIC), was designed for the much dimmer illumination at Pluto. However, two of MVIC's four color filters, the blue and 'methane' filter (a special filter designed to map methane frost on the surface of Pluto at an infrared wavelength of 0.89 microns), are less sensitive than the others, and thus obtained some well-exposed views of the surface when illumination conditions were favorable. Because only two color filters are used, rather than the usual three, and because one filter uses infrared light, the color is only a rough approximation to what the human eye would see.

    The red color of the Tvashtar plume fallout is typical of Io's largest volcanic plumes, including the previous eruption of Tvashtar seen by the Galileo and Cassini spacecraft in 2000, and the long-lived Pele plume on the opposite side of Io. The color likely results from the creation of reddish three-atom and four-atom sulfur molecules (S3 and S4) from plume gases rich in two-atom sulfur molecules (S2 After a few months or years, the S3 and S4 molecules recombine into the more stable and familiar yellowish form of sulfur consisting of eight-atom molecules (S8), so these red deposits are only seen around recently-active Io

  12. Mössbauer studies of subfossil oak

    NASA Astrophysics Data System (ADS)

    van Bürck, Uwe; Wagner, Friedrich E.; Lerf, Anton

    2012-03-01

    Subfossil oak wood found in a dried-up bog in Bavaria, Germany, was studied by Mössbauer spectroscopy. The bog oaks contain substantial amounts of iron taken up from the bog waters and presumably forming complexes with the tanning agents in the oak wood. The iron is mainly Fe3 + and much of this exhibits an uncommonly large quadrupole splitting of up to 1.6 mm/s that can tentatively be explained by the formation of oxo-bridged iron dimers. Only rarely, mainly in the dense wood of the roots of bog oaks, was divalent iron found. When the wood was ground to a powder the divalent iron oxidized to Fe3 + within hours. This suggests that iron is taken up from the bog water as Fe2 + and oxidizes only when the wood emerges from the water and comes into contact with air.

  13. Oak Ridge Reservation environmental report for 1989

    SciTech Connect

    Jacobs, V.A.; Wilson, A.R.

    1990-10-01

    This two-volume report, the Oak Ridge Reservation Environmental Report for 1989, is the nineteenth in an annual series that began in 1971. It reports the results of a comprehensive, year-round program to monitor the impact of operations at the three major US Department of Energy (DOE) production and research installations in Oak Ridge on the immediate areas' and surrounding region's groundwater and surface waters, soil, air quality, vegetation and wildlife, and through these multiple and varied pathways, the resident human population. Information is presented for the environmental monitoring Quality Assurance (QA) Program, audits and reviews, waste management activities, land special environmental studies. Data are included for the Oak Ridge Y-12 Plant, Oak Ridge National Laboratory (ORNL), and Oak Ridge Gaseous Diffusion Plant (ORGDP). Volume 1 presents narratives, summaries, and conclusions based on environmental monitoring at the three DOE installations and in the surrounding environs during calendar year (CY) 1989. Volume 1 is intended to be a stand-alone'' report about the Oak Ridge Reservation (ORR) for the reader who does not want an in-depth review of 1989 data. Volume 2 presents the detailed data from which these conclusions have been drawn and should be used in conjunction with Volume 1.

  14. Seeing Red

    ERIC Educational Resources Information Center

    Galuszka, Peter

    2010-01-01

    This article reports on a study by the National Association of College and University Business Officers and Commonfund Institute that reveals increasing debt further threatens the financial security of U.S. colleges and universities in the aftermath of the recession. Debt increases rapidly as endowments drop and deficit-racked state governments…

  15. Hyperdiversity of ectomycorrhizal fungus assemblages on oak seedlings in mixed forests in the southern Appalachian Mountains.

    PubMed

    Walker, John F; Miller, Orson K; Horton, Jonathan L

    2005-03-01

    Diversity of ectotrophic mycobionts on outplanted seedlings of two oak species (Quercus rubra and Quercus prinus) was estimated at two sites in mature mixed forests in the southern Appalachian Mountains by sequencing nuclear 5.8S rRNA genes and the flanking internal transcribed spacer regions I and II (ITS). The seedlings captured a high diversity of mycorrhizal ITS-types and late-stage fungi were well represented. Total richness was 75 types, with 42 types having a frequency of only one. The first and second order jackknife estimates were 116 and 143 types, respectively. Among Basidiomycetes, tomentelloid/thelephoroid, russuloid, and cortinarioid groups were the richest. The ascomycete Cenococcum geophilum was ubiquitously present. Dominant fungi included a putative Tuber sp. (Ascomycetes), and Basidiomycetes including a putative Craterellus sp., and Laccaria cf. laccata. Diversity was lower at a drier high elevation oak forest site compared to a low elevation mesic cove--hardwood forest site. Fungal specificity for red oak vs. white oak seedlings was unresolved. The high degree of rarity in this system imposes limitations on the power of community analyses at finer scales. The high mycobiont diversity highlights the potential for seedlings to acquire carbon from mycelial networks and confirms the utility of using outplanted seedlings to estimate ectomycorrhizal diversity. PMID:15723674

  16. Spatial and temporal patterns of bioindicator mercury in pennsylvania oak forest.

    PubMed

    McClenahen, James R; Hutnik, Russell J; Davis, Donald D

    2013-01-01

    We monitored spatial and temporal patterns of total Hg in forest bioindicators to assess possible local, regional, and global changes in atmospheric Hg deposition. Total Hg concentrations were monitored in leaves and fresh litterfall of northern red oak ( L.), on an epiphytic moss ( Hedw.) on northern red oak stems, and in surface soil organic matter (O and O horizons) in Pennsylvania oak-dominated forests. Variously configured plots were used to monitor Hg deposition near local coal-fired generating stations and an industrial city and along an extended regional transect. Linearly decreasing temporal trends in Hg concentrations occurred in leaves, litterfall, moss, and soil O and O. Mean annual Hg concentrations were often greater near local emissions sources compared with remote areas, especially in the initial monitoring period. Decreasing time trends for different impact areas tended to converge due to greater rates of Hg decrease where initial bioindicator Hg levels were higher. Fresh litter and soil O showed the greatest overall potential as Hg bioindicators. We conclude that Hg deposition has been significantly decreasing over time throughout the study area as a result of locally and regionally declining Hg emissions. Reductions in Hg emissions are likely a co-benefit of the 1990 Clean Air Act regulations and changing industrial activities. Recent leveling of several bioindicator Hg time trends may foretell a shift in Hg depositional patterns. Mercury monitoring studies such as this fulfill a need for documenting local and regional effects of emissions reduction. PMID:23673822

  17. The development of an aquatic spill model for the White Oak Creek watershed, Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Johnson, R.O.

    1996-05-01

    This study develops an aquatic spill model applicable to the White Oak Creek watershed draining the Oak Ridge National Laboratory. Hazardous, toxic, and radioactive chemicals are handled and stored on the laboratory reservation. An accidental spill into the White Oak Creek watershed could contaminate downstream water supplies if insufficient dilution did not occur. White Oak Creek empties into the Clinch River, which flows into the Tennessee River. Both rivers serve as municipal water supplies. The aquatic spill model provides estimates of the dilution at sequential downstream locations along White Oak creek and the Clinch River after an accidental spill of a liquid containing a radioactively decaying constituent. The location of the spill on the laboratory is arbitrary, while hydrologic conditions range from drought to extreme flood are simulated. The aquatic spill model provides quantitative estimates with which to assess water quality downstream from the site of the accidental spill, allowing an informed decision to be made whether to perform mitigating measures so that the integrity of affected water supplies is not jeopardized.

  18. Where Is the Extended Phenotype in the Wild? The Community Composition of Arthropods on Mature Oak Trees Does Not Depend on the Oak Genotype

    PubMed Central

    Gossner, Martin M.; Brändle, Martin; Brandl, Roland; Bail, Johannes; Müller, Jörg; Opgenoorth, Lars

    2015-01-01

    Through a series of common garden experiments, it has been shown that heritable phenotypic differences between individual trees can affect arthropod communities. However, field studies under heterogeneous environmental conditions remain rare. In the present study, we investigated the genetic constitution of 121 mature oak host trees at different trophic levels from 10 sites across Bavaria, southern Germany and their associated insect communities. A total of 23,576 individuals representing 395 species of beetles and true bugs were evaluated. In particular, we determined whether the composition of arthropod communities is related to the oak genotype and whether the strength of the relationships decreases from lower to higher trophic levels, such as for phytophagous, xylophagous, zoophagous, and mycetophagous species. The genetic differentiation of oaks was assessed using eight microsatellite markers. We found no significant influence of the oak genotype on neither the full beetle and true bug community nor on any of the analyzed trophic guilds. In contrast, the community composition of the insects was highly related to the space and climate, such that the community similarity decreased with increases in spatial distance and climatic differences. The relationship with space and climate was much stronger in beetles than in true bugs, particularly in mycetophagous species. Our results suggest that spatial processes override the genetic effects of the host plant in structuring arthropod communities on oak trees. Because we used neutral markers, we cannot exclude the possibility that trait-specific markers may reveal a genetic imprint of the foundation tree species on the composition of the arthropod community. However, based on the strength of the spatial patterns in our data set, we assume that genetic differences among oaks are less important in the structuring of arthropod communities. Future whole-genome studies are required to draw a final conclusion. PMID:25635387

  19. The structure of the chromophore within DsRed, a red fluorescent protein from coral.

    PubMed

    Gross, L A; Baird, G S; Hoffman, R C; Baldridge, K K; Tsien, R Y

    2000-10-24

    DsRed, a brilliantly red fluorescent protein, was recently cloned from Discosoma coral by homology to the green fluorescent protein (GFP) from the jellyfish Aequorea. A core question in the biochemistry of DsRed is the mechanism by which the GFP-like 475-nm excitation and 500-nm emission maxima of immature DsRed are red-shifted to the 558-nm excitation and 583-nm emission maxima of mature DsRed. After digestion of mature DsRed with lysyl endopeptidase, high-resolution mass spectra of the purified chromophore-bearing peptide reveal that some of the molecules have lost 2 Da relative to the peptide analogously prepared from a mutant, K83R, that stays green. Tandem mass spectrometry indicates that the bond between the alpha-carbon and nitrogen of Gln-66 has been dehydrogenated in DsRed, extending the GFP chromophore by forming C==N==C==O at the 2-position of the imidazolidinone. This acylimine substituent quantitatively accounts for the red shift according to quantum mechanical calculations. Reversible hydration of the C==N bond in the acylimine would explain why denaturation shifts mature DsRed back to a GFP-like absorbance. The C==N bond hydrolyses upon boiling, explaining why DsRed shows two fragment bands on SDS/PAGE. This assay suggests that conversion from green to red chromophores remains incomplete even after prolonged aging. PMID:11050230

  20. The structure of the chromophore within DsRed, a red fluorescent protein from coral

    PubMed Central

    Gross, Larry A.; Baird, Geoffrey S.; Hoffman, Ross C.; Baldridge, Kim K.; Tsien, Roger Y.

    2000-01-01

    DsRed, a brilliantly red fluorescent protein, was recently cloned from Discosoma coral by homology to the green fluorescent protein (GFP) from the jellyfish Aequorea. A core question in the biochemistry of DsRed is the mechanism by which the GFP-like 475-nm excitation and 500-nm emission maxima of immature DsRed are red-shifted to the 558-nm excitation and 583-nm emission maxima of mature DsRed. After digestion of mature DsRed with lysyl endopeptidase, high-resolution mass spectra of the purified chromophore-bearing peptide reveal that some of the molecules have lost 2 Da relative to the peptide analogously prepared from a mutant, K83R, that stays green. Tandem mass spectrometry indicates that the bond between the alpha-carbon and nitrogen of Gln-66 has been dehydrogenated in DsRed, extending the GFP chromophore by forming —C⩵N—C⩵O at the 2-position of the imidazolidinone. This acylimine substituent quantitatively accounts for the red shift according to quantum mechanical calculations. Reversible hydration of the C⩵N bond in the acylimine would explain why denaturation shifts mature DsRed back to a GFP-like absorbance. The C⩵N bond hydrolyses upon boiling, explaining why DsRed shows two fragment bands on SDS/PAGE. This assay suggests that conversion from green to red chromophores remains incomplete even after prolonged aging. PMID:11050230

  1. Working and Learning Among California Oaks

    NASA Astrophysics Data System (ADS)

    Tietje, B.; Gingg, B.; Zingo, J.; Huntsinger, L.

    2009-04-01

    With tremendous support from collaborators and enthusiastic volunteers, "Learning Among the Oaks" at the historic Santa Margarita Ranch has become a favorite outdoor learning experience for hundreds of Santa Margarita School students, along with their teachers and families. Oaks are at the center of this unique and cost effective public education program. From getting to know local oaks to exploring conservation issues within the context of a historic working cattle ranch, students take pride in expanding their awareness and knowledge of the local oak woodland community. Santa Margarita School families representing the varied demographics of the community come together on the trail. For many, the program provides a first opportunity to get to know those who make a living on the land and to understand that this land around their school is more than a pretty view. "Learning Among the Oaks" also addresses the need for quality, hands-on science activities and opportunities to connect children with the outdoor world. Using a thematic approach and correlating lessons with State Science Standards, we've engaged students in a full-spectrum of exciting outdoor learning adventures. As students progress through the grades, they find new challenges within the oak trail environment. We've succeeded in establishing an internship program that brings highly qualified, enthusiastic university students out to practice their science teaching skills while working with elementary school students. In the future, these university student interns may assist with the development of interpretive displays, after-school nature activities and monitoring projects. We've benefited from proximity to Cal Poly State University and its "learn-by-doing" philosophy. We've also succeeded in building a dedicated network of volunteers and collaborators, each with a special interest satisfied through participation in the oak trail program. While "Learning Among the Oaks" has focused on educating school

  2. Large drought-induced variations in oak leaf volatile organic compound emissions during PINOT NOIR 2012

    DOE PAGESBeta

    Geron, Chris; Gu, Lianhong; Daly, Ryan; Harley, Peter; Rasmussen, Rei; Seco, Roger; Guenther, Alex; Karl, Thomas

    2015-12-17

    Here, leaf-level isoprene and monoterpene emissions were collected and analyzed from five of the most abundant oak (Quercus) species in Central Missouri's Ozarks Region in 2012 during PINOT NOIR (Particle Investigations at a Northern Ozarks Tower – NOx, Oxidants, Isoprene Research). June measurements, prior to the onset of severe drought, showed isoprene emission rates and leaf temperature responses similar to those previously reported in the literature and used in Biogenic Volatile Organic Compound (BVOC) emission models. During the peak of the drought in August, isoprene emission rates were substantially reduced, and response to temperature was dramatically altered, especially for themore » species in the red oak subgenus (Erythrobalanus).« less

  3. White-tailed deer (Odocoileus virginianus) on the Department of Energy's Oak Ridge Reservation: 1979 status report

    SciTech Connect

    Kitchings, J.T.; Story, J.D.

    1980-10-01

    Seventy-three white-tailed deer (Odocoileus virginianus) were killed by vehicles on the Department of Energy's Oak Ridge Reservation during 1979, an increase of twenty-eight over 1978. Patterns of mortality were similar to those reported in previous documents. During the year, the highest number of deer was killed in October, November, and December. Throughout the year almost twice as many males as females were killed. Reproductive data collected from 19 does revealed that breeding during 1979 probably occurred from early December through early January. Night-lighting showed the same general trends in population increase that were apparent in the road-kill sample. The number of deer night-lighted in 1976 was 11/110 km, while in 1979 the number rose to 40/100 km. the habitat evaluation which began in 1978 was continued in 1979, with a survey of the number of deer trails from a given habitat-type supplementing the radiotelemetry work. Results indicated a preference for cutover areas where immature pine, eastern red cedar, and grasses dominated and for pine plantations where shelter was provided. Upland hardwoods areas were the least preferred.

  4. Impact of Canopy Openness on Spider Communities: Implications for Conservation Management of Formerly Coppiced Oak Forests.

    PubMed

    Košulič, Ondřej; Michalko, Radek; Hula, Vladimír

    2016-01-01

    Traditional woodland management created a mosaic of differently aged patches providing favorable conditions for a variety of arthropods. After abandonment of historical ownership patterns and traditional management and the deliberate transformation to high forest after World War II, large forest areas became darker and more homogeneous. This had significant negative consequences for biodiversity. An important question is whether even small-scale habitat structures maintained by different levels of canopy openness in abandoned coppiced forest may constitute conditions suitable for forest as well as open habitat specialists. We investigated the effect of canopy openness in former traditionally coppiced woodlands on the species richness, functional diversity, activity density, conservation value, and degree of rareness of epigeic spiders. In each of the eight studied locations, 60-m-long transect was established consisting of five pitfall traps placed at regular 15 m intervals along the gradient. Spiders were collected from May to July 2012. We recorded 90 spider species, including high proportions of xeric specialists (40%) and red-listed threatened species (26%). The peaks of conservation indicators, as well as spider community abundance, were shifted toward more open canopies. On the other hand, functional diversity peaked at more closed canopies followed by a rapid decrease with increasing canopy openness. Species richness was highest in the middle of the canopy openness gradient, suggesting an ecotone effect. Ordinations revealed that species of conservation concern tended to be associated with sparse and partly opened canopy. The results show that the various components of biodiversity peaked at different levels of canopy openness. Therefore, the restoration and suitable forest management of such conditions will retain important diversification of habitats in formerly coppiced oak forest stands. We indicate that permanent presence of small-scale improvements

  5. Impact of Canopy Openness on Spider Communities: Implications for Conservation Management of Formerly Coppiced Oak Forests

    PubMed Central

    Košulič, Ondřej; Michalko, Radek; Hula, Vladimír

    2016-01-01

    Traditional woodland management created a mosaic of differently aged patches providing favorable conditions for a variety of arthropods. After abandonment of historical ownership patterns and traditional management and the deliberate transformation to high forest after World War II, large forest areas became darker and more homogeneous. This had significant negative consequences for biodiversity. An important question is whether even small-scale habitat structures maintained by different levels of canopy openness in abandoned coppiced forest may constitute conditions suitable for forest as well as open habitat specialists. We investigated the effect of canopy openness in former traditionally coppiced woodlands on the species richness, functional diversity, activity density, conservation value, and degree of rareness of epigeic spiders. In each of the eight studied locations, 60-m-long transect was established consisting of five pitfall traps placed at regular 15 m intervals along the gradient. Spiders were collected from May to July 2012. We recorded 90 spider species, including high proportions of xeric specialists (40%) and red-listed threatened species (26%). The peaks of conservation indicators, as well as spider community abundance, were shifted toward more open canopies. On the other hand, functional diversity peaked at more closed canopies followed by a rapid decrease with increasing canopy openness. Species richness was highest in the middle of the canopy openness gradient, suggesting an ecotone effect. Ordinations revealed that species of conservation concern tended to be associated with sparse and partly opened canopy. The results show that the various components of biodiversity peaked at different levels of canopy openness. Therefore, the restoration and suitable forest management of such conditions will retain important diversification of habitats in formerly coppiced oak forest stands. We indicate that permanent presence of small-scale improvements

  6. Optimisation of an oak chips-grape mix maceration process. Influence of chip dose and maceration time.

    PubMed

    Gordillo, Belén; Baca-Bocanegra, Berta; Rodriguez-Pulído, Francisco J; González-Miret, M Lourdes; García Estévez, Ignacio; Quijada-Morín, Natalia; Heredia, Francisco J; Escribano-Bailón, M Teresa

    2016-09-01

    Oak chips-related phenolics are able to modify the composition of red wine and modulate the colour stability. In this study, the effect of two maceration techniques, traditional and oak chips-grape mix process, on the phenolic composition and colour of Syrah red wines from warm climate was studied. Two doses of oak chips (3 and 6g/L) at two maceration times (5 and 10days) during fermentation was considered. Changes on phenolic composition (HPLC-DAD-MS), copigmentation/polymerisation (spectrophotometry), and colour (Tristimulus and Differential Colorimetry) were assessed by multivariate statistical techniques. The addition of oak chips at shorter maceration times enhanced phenolic extraction, colour and its stabilisation in comparison to the traditional maceration. On contrast, increasing chip dose in extended maceration time resulted in wines with lighter and less stable colour. Results open the possibility of optimise alternative technological applications to traditional grape maceration for avoiding the common loss of colour of wines from warm climate. PMID:27041323

  7. Screening of contaminants in Waste Area Grouping 2 at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Blaylock, B.G.; Frank, M.L.; Hoffman, F.O.; Hook, L.A.; Suter, G.W.; Watts, J.A.

    1992-07-01

    Waste Area Grouping 2 (WAG 2) of the Oak Ridge National Laboratory (ORNL) is located in the White Oak Creek Watershed and is composed of White Oak Creek Embayment, White Oak Lake and associated floodplain, and portions of White Oak Creek (WOC) and Melton Branch downstream of ORNL facilities. Contaminants leaving other ORNL WAGs in the WOC watershed pass through WAG 2 before entering the Clinch River. Health and ecological risk screening analyses were conducted on contaminants in WAG 2 to determine which contaminants were of concern and would require immediate consideration for remedial action and which contaminants could be assigned a low priority or further study. For screening purposes, WAG 2 was divided into four geographic reaches: Reach 1, a portion of WOC; Reach 2, Melton Branch; Reach 3, White Oak Lake and the floodplain area to the weirs on WOC and Melton Branch; and Reach 4, the White Oak Creek Embayment, for which an independent screening analysis has been completed. Screening analyses were conducted using data bases compiled from existing data on carcinogenic and noncarcinogenic contaminants, which included organics, inorganics, and radionuclides. Contaminants for which at least one ample had a concentration above the level of detection were placed in a detectable contaminants data base. Those contaminants for which all samples were below the level of detection were placed in a nondetectable contaminants data base.

  8. Development of oak plantations established for wildlife

    USGS Publications Warehouse

    Twedt, D.J.; Wilson, R.R.

    2002-01-01

    Extensive areas that are currently in agricultural production within the Mississippi Alluvial Valley are being restored to bottomland hardwood forests. Oaks (Quercus sp.), sown as seeds (acorns) or planted as seedlings, are the predominant trees established on most afforested sites. To compare stand development and natural invasion on sites afforested by planting seedlings or by sowing acorns, we sampled woody vegetation on ten 14- to 18-year-old oak plantations established to provide wildlife habitat. Stem densities of about 900 oaks/ha were comparable between stands established by sowing 4000 acorns/ha and stands established by planting 900 seedlings/ha. Densities of oaks in stands established from seedlings increased 38% from densities detected when these stands were 4- to 8-year-old. Densities of oaks established from field-sown acorns increased >100% during this same 10-year span. Oaks that were planted as seedlings were larger than those established from acorns, but trees resulting from either afforestation method were larger than trees naturally colonizing these sites. Natural invasion of woody species varied greatly among afforested sites, but was greater and more diverse on sites sown with acorns. Afforested stands were dominated by planted species, whereas naturally invading species were rare among dominant canopy trees. When afforestation objectives are primarily to provide wildlife habitat, we recommend, sowing acorns rather than planting seedlings. Additionally, planting fewer seeds or seedlings, diversifying the species planted, and leaving non-planted gaps will increase diversity of woody species and promote a more complex forest structure that enhances the suitability of afforested sites for wildlife.

  9. Effects of Cattle Management on Oak Regeneration in Northern Californian Mediterranean Oak Woodlands

    PubMed Central

    López-Sánchez, Aida; Schroeder, John; Roig, Sonia; Sobral, Mar; Dirzo, Rodolfo

    2014-01-01

    Oak woodlands of Mediterranean ecosystems, a major component of biodiversity hotspots in Europe and North America, have undergone significant land-use change in recent centuries, including an increase in grazing intensity due to the widespread presence of cattle. Simultaneously, a decrease in oak regeneration has been observed, suggesting a link between cattle grazing intensity and limited oak regeneration. In this study we examined the effect of cattle grazing on coast live oak (Quercus agrifolia Née) regeneration in San Francisco Bay Area, California. We studied seedling, sapling and adult density of coast live oak as well as vertebrate herbivory at 8 independent sites under two grazing conditions: with cattle and wildlife presence (n = 4) and only with wildlife (n = 4). The specific questions we addressed are: i) to what extent cattle management practices affect oak density, and ii) what is the effect of rangeland management on herbivory and size of young oak plants. In areas with cattle present, we found a 50% reduction in young oak density, and plant size was smaller, suggesting that survival and growth young plants in those areas are significantly limited. In addition, the presence of cattle raised the probability and intensity of herbivory (a 1.5 and 1.8-fold difference, respectively). These results strongly suggest that the presence of cattle significantly reduced the success of young Q. agrifolia through elevated herbivory. Given the potential impact of reduced recruitment on adult populations, modifying rangeland management practices to reduce cattle grazing pressure seems to be an important intervention to maintain Mediterranean oak woodlands. PMID:25126939

  10. Effects of cattle management on oak regeneration in northern Californian Mediterranean oak woodlands.

    PubMed

    López-Sánchez, Aida; Schroeder, John; Roig, Sonia; Sobral, Mar; Dirzo, Rodolfo

    2014-01-01

    Oak woodlands of Mediterranean ecosystems, a major component of biodiversity hotspots in Europe and North America, have undergone significant land-use change in recent centuries, including an increase in grazing intensity due to the widespread presence of cattle. Simultaneously, a decrease in oak regeneration has been observed, suggesting a link between cattle grazing intensity and limited oak regeneration. In this study we examined the effect of cattle grazing on coast live oak (Quercus agrifolia Née) regeneration in San Francisco Bay Area, California. We studied seedling, sapling and adult density of coast live oak as well as vertebrate herbivory at 8 independent sites under two grazing conditions: with cattle and wildlife presence (n = 4) and only with wildlife (n = 4). The specific questions we addressed are: i) to what extent cattle management practices affect oak density, and ii) what is the effect of rangeland management on herbivory and size of young oak plants. In areas with cattle present, we found a 50% reduction in young oak density, and plant size was smaller, suggesting that survival and growth young plants in those areas are significantly limited. In addition, the presence of cattle raised the probability and intensity of herbivory (a 1.5 and 1.8-fold difference, respectively). These results strongly suggest that the presence of cattle significantly reduced the success of young Q. agrifolia through elevated herbivory. Given the potential impact of reduced recruitment on adult populations, modifying rangeland management practices to reduce cattle grazing pressure seems to be an important intervention to maintain Mediterranean oak woodlands. PMID:25126939

  11. 9. View from middle adit Wawona Tunnel of Big Oak ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    9. View from middle adit Wawona Tunnel of Big Oak Flat Road with retaining walls at lower left and center left with east portal of tunnel #1. - Big Oak Flat Road, Between Big Oak Flat Entrance & Merced River, Yosemite Village, Mariposa County, CA

  12. View of New Big Oak Flat Road seen from Old ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    View of New Big Oak Flat Road seen from Old Wawona Road near location of photograph HAER CA-148-17. Note road cuts, alignment, and tunnels. Devils Dance Floor at left distance. Looking northwest - Big Oak Flat Road, Between Big Oak Flat Entrance & Merced River, Yosemite Village, Mariposa County, CA

  13. Fluorescent indices of oak and wheat leaves in dependence on chlorophyll content

    NASA Astrophysics Data System (ADS)

    Kalmatskaya, Olesya Ð. ń.; Karavaev, Vladimir A.; Gunar, Lyudmila E.

    2016-04-01

    Fluorescence spectra and fluorescence induction curves of the leaves of two plant species in dependence on chlorophyll content were studied. Red oak (Quercus rubra L.) leaves upon the autumn chlorophyll degradation, as well as wheat leaves (Triticum aestivum L.) at various stages of ontogenesis showed linear dependence between the ratio ω = F740 / F685 (the ratio of the maximum values of fluorescence at respective wavelengths) and chlorophyll content. In both cases, parameter Fv / Fm (the relative value of the variable fluorescence) remained almost unchanged up to significant reduction of chlorophyll content, indicating on maintaining the high photochemical activity of photosystem 2.

  14. Characterization of volatile constituents in commercial oak wood chips.

    PubMed

    Fernández de Simón, Brígida; Muiño, Iria; Cadahía, Estrella

    2010-09-01

    The volatile composition of the different oak wood pieces (chips of Quercus spp.) that can be found on the market to be used as alternatives to barrels for aging wines, as well as of chips of Quercus pyrenaica which are being introduced, was studied, evaluating the contents of volatile phenols, lactones, furanic compounds, pyranones, phenolic aldehydes, phenolic ketones, and others. In regard to the overall results, the volatile composition of these products varies widely and has not been clearly laid out according to either the oak species or the wood toasting intensity. Taking into account that the different characteristics of alternatives to barrel products are reflected in the wine treated with them and that an oenological profile based on these variables (origin and toasting level) cannot be defined, only an appropriate chemical analysis would reveal the quality of alternative-to-barrel products and allow us to attempt to foresee its effects on the chemical and organoleptic characteristics of the wines treated with them. On the other hand, the Q. pyrenaica alternative products are very similar to those of other species, with some aromatic particularities, such as their high levels of furanic compounds, eugenol, Furaneol, and cis-whiskylactone, and low levels of vanillin. PMID:20687559

  15. White Oak Creek Embayment site characterization and contaminant screening analysis

    SciTech Connect

    Blaylock, B.G.; Ford, C.J.; Frank, M.L.; Hoffman, F.O.; Hook, L.A.

    1993-01-01

    Analyses of sediment samples collected near the mouth of White Oak Creek during the summer of 1990 revealed [sup 137]Cs concentrations [> 10[sup 6] Bq/kg dry wt (> 10[sup 4] pCi/g dry wt)] near the sediment surface. Available evidence indicates that these relatively high concentrations of [sup 137]Cs now at the sediment surface were released from White Oak Dam in the mid-1950s and had accumulated at depositionalsites in the embayment. These accumulated sediments are being eroded and transported downstream primarily during winter low-water levels by flood events and by a combination of normal downstream flow and the water turbulence created by the release of water from Melton Hill Dam during hydropower generation cycles. This report provides a more thorough characterization of the extent of contamination in WOCE than was previously available. Environmental samples collected from WOCE were analyzed for organic, inorganic, and radiological contaminants in fish, water, and sediment. These results were used to conduct a human health effects screening analysis. Walkover radiation surveys conducted inside the fenced area surrounding the WOCE at summer-pool (741 ft MSL) and at winter-pool (733 ft MSL) level, indicated a maximum exposure rate of 3 mR h[sup 1] 1 m above the soil surface.

  16. Oak Mountain High School, Shelby County, Alabama.

    ERIC Educational Resources Information Center

    Design Cost Data, 2001

    2001-01-01

    Presents design features of the Oak Mountain High School (Alabama) consisting of an academic side of classrooms, administration, and media center; and an activity side consisting of cafeteria, gymnasium, practice gym, and a theater. The school's floor plan and photos are included. (GR)

  17. 25 MV tandem accelerator at Oak Ridge

    SciTech Connect

    Jones, C.M.

    1980-01-01

    A new heavy-ion accelerator facility is under construction at the Oak Ridge National Laboratory. A brief description of the scope and status of this project is presented with emphasis on the first operational experience with the 25 MV tandem accelerator.

  18. Oak Ridge reservation land-use plan

    SciTech Connect

    Bibb, W. R.; Hardin, T. H.; Hawkins, C. C.; Johnson, W. A.; Peitzsch, F. C.; Scott, T. H.; Theisen, M. R.; Tuck, S. C.

    1980-03-01

    This study establishes a basis for long-range land-use planning to accommodate both present and projected DOE program requirements in Oak Ridge. In addition to technological requirements, this land-use plan incorporates in-depth ecological concepts that recognize multiple uses of land as a viable option. Neither environmental research nor technological operations need to be mutually exclusive in all instances. Unique biological areas, as well as rare and endangered species, need to be protected, and human and environmental health and safety must be maintained. The plan is based on the concept that the primary use of DOE land resources must be to implement the overall DOE mission in Oak Ridge. This document, along with the base map and overlay maps, provides a reasonably detailed description of the DOE Oak Ridge land resources and of the current and potential uses of the land. A description of the land characteristics, including geomorphology, agricultural productivity and soils, water courses, vegetation, and terrestrial and aquatic animal habitats, is presented to serve as a resource document. Essentially all DOE land in the Oak Ridge area is being fully used for ongoing DOE programs or has been set aside as protected areas.

  19. Oak Ridge Reservation Waste Management Plan

    SciTech Connect

    Turner, J.W.

    1995-02-01

    This report presents the waste management plan for the Oak Ridge Reservation facilities. The primary purpose is to convey what facilities are being used to manage wastes, what forces are acting to change current waste management systems, and what plans are in store for the coming fiscal year.

  20. Oak ecosystem succession of the Northern Caucasus

    NASA Astrophysics Data System (ADS)

    Chalaya, Elena; Slepykh, Victor; Efimenko, Natalia; Povolotskaya, Nina

    2014-05-01

    English oak (Quercus robur L.) along with its well-known good properties has a high sanitary-hygienic and curative potential. Its volatile metabolites (VM) influence bacteriostatically Staphylococcus aureus 209r, oppressing it in vitro by 85% compared with the control, and Escherichia coli by 45%. There is the least amount of epiphytic microorganisms on the leaves of Q. robur L. compared with some tree species [1]. In addition, VM of Q. robur L. have direct milieu (hypotensive) effects on the organism under its canopy, lowering blood pressure by 20-25 mm Hg [2]. A.P. Kazankin (1993) [4] calculated the prehistoric formula of forest species composition of Caucasian Mineral Waters region (Northern Caucasus): 6Qr3Crp1Fr which was based on the theory of calcium-magnesium absorption complex. According to the theory, underground mineral water, soil, forest litter and the leaves of ground vegetation of the area have the same ratio of the cations Ca and Mg - calcium-magnesium index [3]. Hence oldgrowth in the region consisted of oak (Qr) by 60%, hornbeam (Carpinus-Crp) by 30% and ash (Fraxinus-Fr) only by 10%. Currently, the formula of the forests of the region has been changed by man: 5Fr3Crp2Qr. The proportion of oak forests has decreased to 20%, the proportion of ash has increased by 50%, but the proportion of hornbeam hasn't changed. So it is relevant to restore oak forests of the region in the former ratio to other forest-forming species - ash and hornbeam. Taking into consideration the change of economic formation of society in Russia, it is extremely important to restore natural seed oak forests. Therein the luminance of surface areal is a limiting factor. We have calculated that the natural recovery of oak forests is possible providing observation of optimal moisture standards and soil fertility in combination with solar light within 10-24% from the light of open space. Measures for promotion of oak natural regeneration in mountain resorts of the Northern Caucasus

  1. Design assessment for the Bethel Valley FFA Upgrades at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    1995-09-01

    This report describes the proposed upgrades to Building 3025 and the Evaporator Area at Oak Ridge National Laboratory. Design assessments, specifications and drawings are provided. Building 3025 is a general purpose research facility utilized by the Materials and Ceramics Division to conduct research on irradiated materials. The Evaporator Area, building 2531, serves as the collection point for all low-level liquid wastes generated at the Oak Ridge National Laboratory.

  2. Seismic hazard evaluation for Department of Energy Oak Ridge Reservations, Oak Ridge, Tennessee

    SciTech Connect

    McGuire, R.K.; Toro, G.F.; Hunt, R.J.

    1992-09-30

    This study presents the results of an investigation of seismic hazard at the Department of Energy Oak Ridge Reservations (K-25 Site, Oak Ridge National Laboratories, and Oak Ridge Y-12 Plant), located in Oak Ridge, Tennessee. Oak Ridge is located in eastern Tennessee, in an area of moderate to high historical seismicity. Results from two separate seismic hazard analyses are presented. The EPRI/SOG analysis uses the input data and methodology developed by the Electric Power Research Institute, under the sponsorship of several electric utilities, for the evaluation of seismic hazard in the central and eastern United States. The LLNL analysis uses the input data and methodology developed by the Lawrence Livermore National Laboratory for the Nuclear Regulatory Commission. Both the EPRI/SOG and LLNL studies characterize earth-science uncertainty on the causes and characteristics of earthquakes in the central and eastern United States. This is accomplished by considering multiple hypotheses on the locations and parameters of seismic source zones and by considering multiple attenuation functions for the prediction of ground shaking given earthquake size and location. These hypotheses were generated by multiple expert teams and experts. Furthermore, each team and expert was asked to generate multiple hypotheses in order to characterize his own internal uncertainty. The seismic-hazard calculations are performed for all hypotheses. Combining the results from each hypothesis with the weight associated to that hypothesis, one obtains an overall representation of the seismic hazard at the Oak Ridge site and its uncertainty.

  3. A unique ecological niche fosters hybridization of oak-tree and vineyard isolates of Saccharomyces cerevisiae.

    PubMed

    Clowers, Katie J; Will, Jessica L; Gasch, Audrey P

    2015-12-01

    Differential adaptation to distinct niches can restrict gene flow and promote population differentiation within a species. However, in some cases the distinction between niches can collapse, forming a hybrid niche with features of both environments. We previously reported that distinctions between vineyards and oak soil present an ecological barrier that restricts gene flow between lineages of Saccharomyces cerevisiae. Vineyard isolates are tolerant to stresses associated with grapes while North American oak strains are particularly tolerant to freeze-thaw cycles. Here, we report the isolation of S. cerevisiae strains from Wisconsin cherry trees, which display features common to vineyards (e.g. high sugar concentrations) and frequent freeze-thaw cycles. Genome sequencing revealed that the isolated strains are highly heterozygous and represent recent hybrids of the oak × vineyard lineages. We found that the hybrid strains are phenotypically similar to vineyard strains for some traits, but are more similar to oak strains for other traits. The cherry strains were exceptionally good at growing in cherry juice, raising the possibility that they have adapted to this niche. We performed transcriptome profiling in cherry, oak and vineyard strains and show that the cherry-tree hybrids display vineyard-like or oak-like expression, depending on the gene sets, and in some cases, the expression patterns linked back to shared stress tolerances. Allele-specific expression in these natural hybrids suggested concerted cis-regulatory evolution at sets of functionally regulated genes. Our results raise the possibility that hybridization of the two lineages provides a genetic solution to the thriving in this unique niche. PMID:26518477

  4. 76 FR 80433 - In the Matter of Royal Oak Capital Management, LLC, 6173 Bellevue Road, Royal Oak, MD 21662...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-12-23

    ... From the Federal Register Online via the Government Publishing Office SECURITIES AND EXCHANGE COMMISSION In the Matter of Royal Oak Capital Management, LLC, 6173 Bellevue Road, Royal Oak, MD 21662...''), cancelling the registration of Royal Oak Capital Management, LLC, hereinafter referred to as the...

  5. Red blood cell production

    MedlinePlus

    ... cells are an important element of blood. Their job is to transport oxygen to the body’s tissues in exchange for carbon dioxide, which is carried to and eliminated by the lungs. Red blood cells are formed in the red bone marrow of bones. Stem cells in the red bone marrow called hemocytoblasts ...

  6. RED-LETTER DAYS

    EPA Science Inventory

    The word "red-letter" is an adjective meaning "of special significance." It's origin is from the practice of marking Christian holy days in red letters on calendars. The "red-letter days" to which I refer occurred while I was a graduate student of ...

  7. International Federation of Red Cross and Red Crescent Societies

    MedlinePlus

    ... dignity and resilience Geneva, 14 September 2016 – The International Federation of Red Cross and Red Crescent Societies... ... News Contact us Sitemap Go to top The International Federation of Red Cross and Red Crescent Societies ( ...

  8. Osmotic potential of several hardwood species as affected by manipulation of throughfall precipitation in an upland oak forest during a dry year.

    PubMed

    Tschaplinski, Timothy J.; Gebre, G. Michael; Shirshac, Terri L.

    1998-05-01

    Components of dehydration tolerance, including osmotic potential at full turgor (Psi(pio)) and osmotic adjustment (lowering of Psi(pio)), of several deciduous species were investigated in a mature, upland oak forest in eastern Tennessee. Beginning July 1993, the trees were subjected to one of three throughfall precipitation treatments: ambient, ambient minus 33% (dry treatment), and ambient plus 33% (wet treatment). During the dry 1995 growing season, leaf water potentials of all species declined to between -2.5 and -3.1 MPa in the dry treatment. There was considerable variation in Psi(pio) among species (-1.0 to -2.0 MPa). Based on Psi(pio) values, American beech (Fagus grandifolia Ehrh.), dogwood (Cornus florida L.), and sugar maple (Acer saccharum Marsh.) were least dehydration tolerant, red maple (A. rubrum L.) was intermediate in tolerance, and white oak (Quercus alba L.) and chestnut oak (Quercus prinus L.) were most tolerant. During severe drought, overstory chestnut oak and understory dogwood, red maple and chestnut oak displayed osmotic adjustment (-0.12 to -0.20 MPa) in the dry treatment relative to the wet treatment. (No osmotic adjustment was evident in understory red maple and chestnut oak during the previous wet year.) Osmotic potential at full turgor was generally correlated with leaf water potential, with both declining over the growing season, especially in species that displayed osmotic adjustment. However, osmotic adjustment was not restricted to species considered dehydration tolerant; for example, dogwood typically maintained high Psi(pio) and displayed osmotic adjustment to drought, but had the highest mortality rates of the species studied. Understory saplings tended to have higher Psi(pio) than overstory trees when water availability was high, but Psi(pio) of understory trees declined to values observed for overstory trees during severe drought. We conclude that Psi(pio) varies among deciduous hardwood species and is dependent on canopy

  9. Revealing Mercury

    NASA Astrophysics Data System (ADS)

    Prockter, L. M.; Solomon, S. C.; Head, J. W.; Watters, T. R.; Murchie, S. L.; Robinson, M. S.; Chapman, C. R.; McNutt, R. L.

    2009-04-01

    The MErcury Surface, Space ENvironment, GEochemistry, and Ranging (MESSENGER) spacecraft, developed under NASA's Discovery Program, launched in August 2004. En route to insertion into orbit about Mercury in 2011, MESSENGER flies by Mercury three times. The first and second of these encounters were accomplished in January and October of 2008. These flybys viewed portions of Mercury's surface that were not observed by Mariner 10 during its reconnaissance of somewhat less than half of the planet in 1974-1975. All MESSENGER instruments operated during each flyby and returned a wealth of new data. Many of the new observations were focused on the planet's geology, including monochrome imaging at resolutions as high as 100 m/pixel, multispectral imaging in 11 filters at resolutions as high as 500 m/pixel, laser altimetry tracks extending over several thousands of kilometers, and high-resolution spectral measurements of several types of terrain. Here we present an overview of the first inferences on the global geology of Mercury from the MESSENGER observations. Whereas evidence for volcanism was equivocal from Mariner 10 data, the new MESSENGER images and altimetry provide compelling evidence that volcanism was widespread and protracted on Mercury. Color imaging reveals three common spectral units on the surface: a higher-reflectance, relatively red material occurring as a distinct class of smooth plains, typically with distinct embayment relationships interpreted to indicate volcanic emplacement; a lower-reflectance, relatively blue material typically excavated by impact craters and therefore inferred to be more common at depth; and a spectrally intermediate terrain that constitutes much of the uppermost crust. Three more minor spectral units are also seen: fresh crater ejecta, reddish material associated with rimless depressions interpreted to be volcanic centers, and high-reflectance deposits seen in some crater floors. Preliminary measurements of crater size

  10. Sampling and Analysis Plan for White Oak Creek Watershed Remedial Investigation supplemental sampling, Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    1996-05-01

    This Sampling and Analysis (SAP) presents the project requirements for proposed soil sampling to support the White Oak Creek Remedial Investigation/Feasibility Study at Oak Ridge National Laboratory. During the Data Quality Objectives process for the project, it was determined that limited surface soils sampling is need to supplement the historical environmental characterization database. The primary driver for the additional sampling is the need to identify potential human health and ecological risks at various sites that have not yet proceeded through a remedial investigation. These sites include Waste Area Grouping (WAG)3, WAG 4, WAG 7, and WAG 9. WAG 4 efforts are limited to nonradiological characterization since recent seep characterization activities at the WAG have defined the radiological problem there.

  11. White Oak Creek watershed: Melton Valley area Remedial Investigation report, at the Oak Ridge National Laboratory, Oak Ridge, Tennessee: Volume 2, Appendixes A and B

    SciTech Connect

    1996-11-01

    This document contains Appendixes A ``Source Inventory Information for the Subbasins Evaluated for the White Oak Creek Watershed`` and B ``Human Health Risk Assessment for White Oak Creek / Melton Valley Area`` for the remedial investigation report for the White Oak Creek Watershed and Melton Valley Area. Appendix A identifies the waste types and contaminants for each subbasin in addition to the disposal methods. Appendix B identifies potential human health risks and hazards that may result from contaminants present in the different media within Oak Ridge National Laboratory sites.

  12. Fade to Red

    NASA Technical Reports Server (NTRS)

    2006-01-01

    [figure removed for brevity, see original site] Infrared Andromeda Galaxy (M31) Poster [figure removed for brevity, see original site] [figure removed for brevity, see original site] Stars Dust

    This animation shows the Andromeda galaxy, first as seen in visible light by the National Optical Astronomy Observatory, then as seen in infrared by NASA's Spitzer Space Telescope.

    The visible-light image highlights the galaxy's population of about one trillion stars. The stars are so crammed into its core that this region blazes with bright starlight.

    In contrast, the false-colored Spitzer view reveals red waves of dust against a more tranquil sea of blue stars. The dust lanes can be seen twirling all the way into the galaxy's center. This dust is warmed by young stars and shines at infrared wavelengths , which are represented in red. The blue color signifies shorter-wavelength infrared light primarily from older stars.

    The Andromeda galaxy, also known affectionately by astronomers as Messier 31, is located 2.5 million light-years away in the constellation Andromeda. It is the closest major galaxy to the Milky Way, making it the ideal specimen for carefully examining the nature of galaxies. On a clear, dark night, the galaxy can be spotted with the naked eye as a fuzzy blob.

    Andromeda's entire disk spans about 260,000 light-years, which means that a light beam would take 260,000 years to travel from one end of the galaxy to the other. By comparison, the Milky Way is about 100,000 light-years across. When viewed from Earth, Andromeda occupies a portion of the sky equivalent to seven full moons.

    Because this galaxy is so large, the infrared images had to be stitched together out of about 3,000 separate Spitzer exposures. The light detected by Spitzer's infrared array camera at 3.6 and 4.5 microns is sensitive mostly to starlight and is shown in blue and green, respectively. The 8-micron light shows warm dust and is shown in red. The

  13. Hydrologic data summary for the White Oak Watershed at Oak Ridge National Laboratory, Oak Ridge, Tennessee, October 1990--December 1991

    SciTech Connect

    Borders, D.M.; Gregory, S.M.; Clapp, R.B.; Frederick, B.J.; Watts, J.A.

    1992-06-01

    This report summarizes for the 15-month period of October 1990-- December 1991 the available dynamic hydrologic data collected, primarily on the White Oak Creek (WOC) watershed, along with information collected on the surface flow systems that affect the quality or quantity of surface water. The collection of hydrologic data is one component of numerous, ongoing Oak Ridge National Laboratory (ORNL) environmental studies and monitoring programs and is intended to: (1) characterize the quantity and quality of water in the flow systems; (2) assist with the planning and assessment of remedial action activities; and, (3) provide long-term availability of data and quality assurance. Characterization of the hydrology of the WOC watershed is critical for understanding the processes that drive contaminant transport in the watershed. Identification of spatial and temporal trends in hydrologic parameters and mechanisms that affect the movement of contaminants supports the development of interim corrective measures and remedial restoration alternatives. In addition, hydrologic monitoring supports long-term assessment of the effectiveness of remedial actions in limiting the transport of contaminants across Waste Area Grouping (WAG) boundaries and ultimately to the off-site environment. For these reasons, it is of paramount importance to the Environmental Restoration Program (ERP) to collect and report hydrologic data activities that contribute to the Site Investigations component of the ERP. (White Oak Creek is also referred to as ``Whiteoak`` Creek).

  14. Hydrologic data summary for the White Oak Watershed at Oak Ridge National Laboratory, Oak Ridge, Tennessee, October 1990--December 1991

    SciTech Connect

    Borders, D.M.; Gregory, S.M.; Clapp, R.B.; Frederick, B.J.; Watts, J.A.

    1992-06-01

    This report summarizes for the 15-month period of October 1990-- December 1991 the available dynamic hydrologic data collected, primarily on the White Oak Creek (WOC) watershed, along with information collected on the surface flow systems that affect the quality or quantity of surface water. The collection of hydrologic data is one component of numerous, ongoing Oak Ridge National Laboratory (ORNL) environmental studies and monitoring programs and is intended to: (1) characterize the quantity and quality of water in the flow systems; (2) assist with the planning and assessment of remedial action activities; and, (3) provide long-term availability of data and quality assurance. Characterization of the hydrology of the WOC watershed is critical for understanding the processes that drive contaminant transport in the watershed. Identification of spatial and temporal trends in hydrologic parameters and mechanisms that affect the movement of contaminants supports the development of interim corrective measures and remedial restoration alternatives. In addition, hydrologic monitoring supports long-term assessment of the effectiveness of remedial actions in limiting the transport of contaminants across Waste Area Grouping (WAG) boundaries and ultimately to the off-site environment. For these reasons, it is of paramount importance to the Environmental Restoration Program (ERP) to collect and report hydrologic data activities that contribute to the Site Investigations component of the ERP. (White Oak Creek is also referred to as Whiteoak'' Creek).

  15. A Review of Polyphenolics in Oak Woods

    PubMed Central

    Zhang, Bo; Cai, Jian; Duan, Chang-Qing; Reeves, Malcolm J.; He, Fei

    2015-01-01

    Polyphenolics, which are ubiquitous in plants, currently are among the most studied phytochemicals because of their perceptible chemical properties and antioxidant activity. Oak barrels and their alternatives, which are widely used in winemaking nowadays, contribute polyphenolics to wines and are thought to play crucial roles in the development of wines during aging. This study summarizes the detailed information of polyphenolics in oak woods and their products by examining their structures and discussing their chemical reactions during wine aging. This paper evaluates the most recent developments in polyphenolic chemistry by summarizing their extraction, separation, and their identification by the use of chromatographic and spectral techniques. In addition, this paper also introduces polyphenol bioactive ingredients in other plant foods. PMID:25826529

  16. VOC emissions from beech, birch, and oak

    NASA Astrophysics Data System (ADS)

    Wildt, J.; Folkers, A.; Koch, N.; Kleist, E.

    2003-04-01

    VOC emissions from beech (Fagus sylvatica), birch (Betula pendula), and oak (Quercus robur) were studied in continuously stirred tank reactors. Oak emitted nearly exclusively isoprene. The dependence of these isoprene emissions on temperature and photosynthetic radiation (PAR) could quite well be described with existing algorithms and the emission factors were fairly constant. Beech and birch emitted mainly short chained oxygenated VOC and monoterpenes. Temperature and PAR dependence of monoterpene emissions were superimposed by a slow frequency modulation. Hence, descriptions of these emissions with existing algorithms were not successful. Moreover, in some cases the emission pattern switched drastically. For birch it was observed that the plant switched from a sesquiterpene emitter to a monoterpene emitter. emission pattern plants. Emissions of ethanol, acetaldehyde, and methanol were not affected by PAR. Here, the emission factors are determined by other factors not included in existing algorithms.

  17. ORNL (Oak Ridge National Laboratory) 89

    SciTech Connect

    Anderson, T.D.; Appleton, B.R.; Jefferson, J.W.; Merriman, J.R.; Mynatt, F.R.; Richmond, C.R.; Rosenthal, M.W.

    1989-01-01

    This is the inaugural issues of an annual publication about the Oak Ridge National Laboratory. Here you will find a brief overview of ORNL, a sampling of our recent research achievements, and a glimpse of the directions we want to take over the next 15 years. A major purpose of ornl 89 is to provide the staff with a sketch of the character and dynamics of the Laboratory.

  18. Oak Ridge National Laboratory Waste Management Plan

    SciTech Connect

    Not Available

    1992-12-01

    The objective of the Oak Ridge National Laboratory Waste Management Plan is to compile and to consolidate information annually on how the ORNL Waste Management Program is conducted, which waste management facilities are being used to manage wastes, what forces are acting to change current waste management systems, what activities are planned for the forthcoming fiscal year (FY), and how all of the activities are documented.

  19. Comparison of the carbon stock in forest soil of sessile oak and beech forests

    NASA Astrophysics Data System (ADS)

    Horváth, Adrienn; Bene, Zsolt; Bidló, András

    2016-04-01

    Forest ecosystems are the most important carbon sinks. The forest soils play an important role in the global carbon cycle, because the global climate change or the increase of atmospheric CO2 level. We do not have enough data about the carbon stock of soils and its change due to human activities, which have similar value to carbon content of biomass. In our investigation we measured the carbon stock of soil in 10 stands of Quercus petraea and Fagus sylvatica. We took a 1.1 m soil column with soil borer and divided to 11 samples each column. The course organic and root residues were moved. After evaluation, we compared our results with other studies and the carbon stock of forests to each other. Naturally, the amount of SOC was the highest in the topsoil layers. However, we found significant difference between forest stands which stayed on the same homogenous bedrock, but very close to each other (e.g. distance was 1 or 2 km). We detected that different forest utilizations and tree species have an effect on the forest carbon as the litter as well (amount, composition). In summary, we found larger amount (99.1 C t/ha on average) of SOC in soil of stands, where sessile oak were the main stand-forming tree species. The amount of carbon was the least in turkey oak-sessile oak stands (85.4 C t/ha on average). We found the highest SOC (118.3 C t/ha) in the most mixed stand (silver lime-beech-red oak). In the future, it will be very important: How does climate change affect the spread of tree species or on carbon storage? Beech is more sensitive, but even sessile oak. These species are expected to replace with turkey oak, which is less sensitive to drought. Thus, it is possible in the future that we can expect to decrease of forest soil carbon stock capacity, which was confirmed by our experiment. Keywords: carbon sequestration, mitigation, Fagus sylvatica, Quercus petraea, litter Acknowledgements: Research is supported by the "Agroclimate.2" (VKSZ_12-1-2013-0034) EU

  20. Large drought-induced variations in oak leaf volatile organic compound emissions during PINOT NOIR 2012.

    PubMed

    Geron, Chris; Daly, Ryan; Harley, Peter; Rasmussen, Rei; Seco, Roger; Guenther, Alex; Karl, Thomas; Gu, Lianhong

    2016-03-01

    Leaf-level isoprene and monoterpene emissions were collected and analyzed from five of the most abundant oak (Quercus) species in Central Missouri's Ozarks Region in 2012 during PINOT NOIR (Particle Investigations at a Northern Ozarks Tower - NOx, Oxidants, Isoprene Research). June measurements, prior to the onset of severe drought, showed isoprene emission rates and leaf temperature responses similar to those previously reported in the literature and used in Biogenic Volatile Organic Compound (BVOC) emission models. During the peak of the drought in August, isoprene emission rates were substantially reduced, and response to temperature was dramatically altered, especially for the species in the red oak subgenus (Erythrobalanus). Quercus stellata (in the white oak subgenus Leucobalanus), on the other hand, increased its isoprene emission rate during August, and showed no decline at high temperatures during June or August, consistent with its high tolerance to drought and adaptation to xeric sites at the prairie-deciduous forest interface. Mid-late October measurements were conducted after soil moisture recharge, but were affected by senescence and cooler temperatures. Isoprene emission rates were considerably lower from all species compared to June and August data. The large differences between the oaks in response to drought emphasizes the need to consider BVOC emissions at the species level instead of just the whole canopy. Monoterpene emissions from Quercus rubra in limited data were highest among the oaks studied, while monoterpene emissions from the other oak species were 80-95% lower and less than assumed in current BVOC emission models. Major monoterpenes from Q. rubra (and in ambient air) were p-cymene, α-pinene, β-pinene, d-limonene, γ-terpinene, β-ocimene (predominantly1,3,7-trans-β-ocimene, but also 1,3,6-trans-β-ocimene), tricyclene, α-terpinene, sabinene, terpinolene, and myrcene. Results are discussed in the context of canopy flux studies

  1. Volatile compounds and sensorial characterization of wines from four Spanish denominations of origin, aged in Spanish Rebollo (Quercus pyrenaica Willd.) oak wood barrels.

    PubMed

    Fernández de Simón, Brígida; Cadahía, Estrella; Sanz, Miriam; Poveda, Pilar; Perez-Magariño, Silvia; Ortega-Heras, Miriam; González-Huerta, Carlos

    2008-10-01

    The evolution of almost 40 oak-related volatile compounds and the sensorial characteristics of red wines from four Spanish denominations of origin (DOs) (Bierzo, Toro, Ribera de Duero, and Rioja) during aging in barrels made of Rebollo oak wood, Quercus pyrenaica, were studied and compared to the same wines aged in American and French oak barrels. Each oak wood added unique and special characteristics to the wine, and in addition, each wine showed a different ability to extract the compounds, which result in these characteristics from the oak wood. In general, wines aged in Q. pyrenaica wood were characterized by high levels of eugenol, guaiacol, and other volatile phenols. In regards to compounds like cis-whiskylactone or maltol, the behavior of this wood is very similar to that of American oaks. When considering phenolic aldehydes and ketones, the levels of these compounds are intermediate between those of French and American woods and depend greatly on the type of wine. The type of oak, on the other hand, does not affect the chromatic characteristics of the wines. In sensory analysis, the biggest differences are found in the olfactory phase. Among the four DOs studied, wine aged in Q. pyrenaica presented the highest notes of wood, with more aromas of roasting, toasting, milky coffee, spices, or wine-wood interactions. The wines aged in barrels made of Q. pyrenaica wood were highly regarded, and preference was shown for them over those same wines when they had been aged in barrels of American or French oak. PMID:18778067

  2. How Does a Carnivore Guild Utilise a Substantial but Unpredictable Anthropogenic Food Source? Scavenging on Hunter-Shot Ungulate Carcasses by Wild Dogs/Dingoes, Red Foxes and Feral Cats in South-Eastern Australia Revealed by Camera Traps

    PubMed Central

    Forsyth, David M.; Woodford, Luke; Moloney, Paul D.; Hampton, Jordan O.; Woolnough, Andrew P.; Tucker, Mark

    2014-01-01

    There is much interest in understanding how anthropogenic food resources subsidise carnivore populations. Carcasses of hunter-shot ungulates are a potentially substantial food source for mammalian carnivores. The sambar deer (Rusa unicolor) is a large (≥150 kg) exotic ungulate that can be hunted throughout the year in south-eastern Australia, and hunters are not required to remove or bury carcasses. We investigated how wild dogs/dingoes and their hybrids (Canis lupus familiaris/dingo), red foxes (Vulpes vulpes) and feral cats (Felis catus) utilised sambar deer carcasses during the peak hunting seasons (i.e. winter and spring). We placed carcasses at 1-km intervals along each of six transects that extended 4-km into forest from farm boundaries. Visits to carcasses were monitored using camera traps, and the rate of change in edible biomass estimated at ∼14-day intervals. Wild dogs and foxes fed on 70% and 60% of 30 carcasses, respectively, but feral cats seldom (10%) fed on carcasses. Spatial and temporal patterns of visits to carcasses were consistent with the hypothesis that foxes avoid wild dogs. Wild dog activity peaked at carcasses 2 and 3 km from farms, a likely legacy of wild dog control, whereas fox activity peaked at carcasses 0 and 4 km from farms. Wild dog activity peaked at dawn and dusk, whereas nearly all fox activity occurred after dusk and before dawn. Neither wild dogs nor foxes remained at carcasses for long periods and the amount of feeding activity by either species was a less important predictor of the loss of edible biomass than season. Reasons for the low impacts of wild dogs and foxes on sambar deer carcass biomass include the spatially and temporally unpredictable distribution of carcasses in the landscape, the rapid rate of edible biomass decomposition in warm periods, low wild dog densities and the availability of alternative food resources. PMID:24918425

  3. How does a carnivore guild utilise a substantial but unpredictable anthropogenic food source? Scavenging on hunter-shot ungulate carcasses by wild dogs/dingoes, red foxes and feral cats in south-eastern Australia revealed by camera traps.

    PubMed

    Forsyth, David M; Woodford, Luke; Moloney, Paul D; Hampton, Jordan O; Woolnough, Andrew P; Tucker, Mark

    2014-01-01

    There is much interest in understanding how anthropogenic food resources subsidise carnivore populations. Carcasses of hunter-shot ungulates are a potentially substantial food source for mammalian carnivores. The sambar deer (Rusa unicolor) is a large (≥ 150 kg) exotic ungulate that can be hunted throughout the year in south-eastern Australia, and hunters are not required to remove or bury carcasses. We investigated how wild dogs/dingoes and their hybrids (Canis lupus familiaris/dingo), red foxes (Vulpes vulpes) and feral cats (Felis catus) utilised sambar deer carcasses during the peak hunting seasons (i.e. winter and spring). We placed carcasses at 1-km intervals along each of six transects that extended 4-km into forest from farm boundaries. Visits to carcasses were monitored using camera traps, and the rate of change in edible biomass estimated at ∼ 14-day intervals. Wild dogs and foxes fed on 70% and 60% of 30 carcasses, respectively, but feral cats seldom (10%) fed on carcasses. Spatial and temporal patterns of visits to carcasses were consistent with the hypothesis that foxes avoid wild dogs. Wild dog activity peaked at carcasses 2 and 3 km from farms, a likely legacy of wild dog control, whereas fox activity peaked at carcasses 0 and 4 km from farms. Wild dog activity peaked at dawn and dusk, whereas nearly all fox activity occurred after dusk and before dawn. Neither wild dogs nor foxes remained at carcasses for long periods and the amount of feeding activity by either species was a less important predictor of the loss of edible biomass than season. Reasons for the low impacts of wild dogs and foxes on sambar deer carcass biomass include the spatially and temporally unpredictable distribution of carcasses in the landscape, the rapid rate of edible biomass decomposition in warm periods, low wild dog densities and the availability of alternative food resources. PMID:24918425

  4. O2-dependent K+ fluxes in trout red blood cells: the nature of O2 sensing revealed by the O2 affinity, cooperativity and pH dependence of transport

    PubMed Central

    Berenbrink, Michael; Völkel, Susanne; Heisler, Norbert; Nikinmaa, Mikko

    2000-01-01

    The effects of pH and O2 tension on the isotonic ouabain-resistant K+ (Rb+) flux pathway and on haemoglobin O2 binding were studied in trout red blood cells (RBCs) in order to test for a direct effect of haemoglobin O2 saturation on K+ transport across the RBC membrane. At pH values corresponding to in vivo control arterial plasma pH and higher, elevation of the O2 partial pressure (PO2) from 7.8 to 157 mmHg increased unidirectional K+ influx across the RBC membrane several-fold. At lower extracellular pH values, stimulation of K+ influx by O2 was depressed, exhibiting an apparent pKa (pK′a) for the process of 8.0. Under similar conditions the pK′a for acid-induced deoxygenation of haemoglobin (Hb) was 7.3. When trout RBCs were exposed to PO2 values between 0 and 747 mmHg, O2 equilibrium curves typical of Hb O2 saturation were also obtained for K+ influx and efflux. However, at pH 7.9, the PO2 for half-maximal K+ efflux and K+ influx (P50) was about 8- to 12-fold higher than the P50 for Hb-O2 binding. While K+ influx and efflux stimulation by O2 was essentially non-cooperative, Hb-O2 equilibrium curves were distinctly sigmoidal (Hill parameters close to 1 and 3, respectively). O2-stimulated K+ influx and efflux were strongly pH dependent. When the definition of the Bohr factor for respiratory pigments (Φ =ΔlogP50×ΔpH−1) was extended to the effect of pH on O2-dependent K+ influx and efflux, extracellular Bohr factors (Φo) of -2.00 and -2.06 were obtained, values much higher than that for Hb (Φo = -0.49). The results of this study are consistent with an O2 sensing mechanism differing markedly in affinity and cooperativity of O2 binding, as well as in pH sensitivity, from bulk Hb. PMID:10878100

  5. Floodplain and wetlands assessment of the White Oak Creek Embayment

    SciTech Connect

    Not Available

    1991-07-01

    This report describes the proposed methods for dealing with contaminants that have accumulated in White Oak Creek, White Oak Lake, and the White Oak Creek Embayment as a result of process releases and discharges from the Oak Ridge National Laboratory. Alternative methods of cleaning up the area which were considered in accordance with regulatory guidelines are listed, and information supporting the selected methods is provided. Also included are results of a site survey conducted at the White Oak Creek Embayment and the expected effects of the proposed control structures on the floodplain and wetlands. The appendix contains figures showing the nine cross-sections of the stream channel surveyed during studies of the White Oak Creek area.

  6. Influence of host species on ectomycorrhizal communities associated with two co-occurring oaks (Quercus spp.) in a tropical cloud forest.

    PubMed

    Morris, Melissa H; Pérez-Pérez, Miguel A; Smith, Matthew E; Bledsoe, Caroline S

    2009-08-01

    Interactions between host tree species and ectomycorrhizal fungi are important in structuring ectomycorrhizal communities, but there are only a few studies on host influence of congeneric trees. We investigated ectomycorrhizal community assemblages on roots of deciduous Quercus crassifolia and evergreen Quercus laurina in a tropical montane cloud forest, one of the most endangered tropical forest ecosystems. Ectomycorrhizal fungi were identified by sequencing internal transcribed spacer and partial 28S rRNA gene. We sampled 80 soil cores and documented high ectomycorrhizal diversity with a total of 154 taxa. Canonical correspondence analysis indicated that oak host was significant in explaining some of the variation in ectomycorrhizal communities, despite the fact that the two Quercus species belong to the same red oak lineage (section Lobatae). A Tuber species, found in 23% of the soil cores, was the most frequent taxon. Similar to oak-dominated ectomycorrhizal communities in temperate forests, Thelephoraceae, Russulaceae and Sebacinales were diverse and dominant. PMID:19508503

  7. Variable Red Giants--The MACHO View

    SciTech Connect

    Keller, S C; Cook, K H

    2003-01-03

    The authors present a study of the MACHO red variable population in the Large Magellanic Cloud. This study reveals six period-luminosity relations among the red variable population. Only two of these were known prior to MACHO. The results are consistent with Mira pulsation in the fundamental mode. A sequence comprising 26% of the red variable population can not be explained by pulsation. They propose a dust {kappa}-mechanism in the circumstellar environment is responsible for the long period variation of these objects. The luminosity function of the variables shows a sharp edge at the tip of the red giant branch (TRGB). This is the first clear indication of a population of variable stars within the immediate vicinity of the TRGB. The results indicate this population amounts to 8% of the RGB population near the TRGB.

  8. Effect of replacing oat fodder with fresh and chopped oak leaves on in vitro rumen fermentation, digestibility and metabolizable energy

    PubMed Central

    Rajkumar, K.; Bhar, R.; Kannan, A.; Jadhav, R.V.; Singh, Birbal; Mal, and G.

    2015-01-01

    Aim: A study was conducted to evaluate the effect of replacing oat fodder (OF) with fresh oak leaves (FOL) or chopped oak leaves (COL) on rumen fermentation and digestibility through in vitro gas production technique (IVGPT). Materials and Methods: Nine different diets were prepared by mixing OF with oak leaves (either FOL or COL) in different ratios (100:0, 75:25, 50:50, 25:75, and 0:100). The rations were evaluated through Hohenheim IVGPT with 200 mg substrate and 30 ml of buffered rumen liquor. All the syringes were incubated at 39°C for 24 h in buffered rumen liquor of cattle. After 24 h, the total gas production was recorded, and the contents were analyzed for in vitro methane production, protozoa no. and ammonia-N. Results: Chopping (p<0.01) reduced the tannin fractions as well as non-tannin phenol. Increase in levels of oak decreased total gas production, methane, organic matter (OM) digestibility, and metabolizable energy (ME) values. The polyphenol content of the substrate did not show any significant difference on the protozoal count. Conclusion: In vitro studies revealed that the addition of oak leaves reduced the methane production and ammonia nitrogen levels; however, it also decreased the OM digestibility and ME values linearly as the level of the oak leaves increased in the diet. Chopping was effective only at lower inclusion levels. Further studies, especially in vivo studies, are needed to explore the safe inclusion levels of oak leaves in the diet of ruminants. PMID:27047192

  9. Red Marks the Spot

    NASA Technical Reports Server (NTRS)

    2004-01-01

    This hematite abundance index map helps geologists choose hematite-rich locations to visit around Opportunity's landing site. Blue dots equal areas low in hematite and red dots equal areas high in hematite.

    Why Hematite Geologists are eager to reach the hematite-rich area in the upper left to closely examine the soil, which may reveal secrets about how the hematite got to this location. Knowing how the hematite on Mars was formed may help scientists characterize the past environment and determine whether that environment provided favorable conditions for life.

    The Plan Over the next few sols, engineers and scientists plan to drive Opportunity to the hematite-rich area then attempt a 'pre-trench' sequence, taking measurements with the Moessbauer spectrometer, alpha particle X-ray spectrometer and microscopic imager. Next, the plan is to trench the hematite rich area by spinning one wheel in place to 'dig' a shallow hole. Finally, scientists will aim the instrument arm back at the same area where it pre-trenched to get post-trench data with the same instruments to compare and contrast the levels of hematite and revel how deep the hematite lays in the dirt.

    Index Map Details The hematite abundance index map was created using data from the miniature thermal emission instrument. The first layer is a mosaic of panoramic camera images taken prior to egress, when Opportunity was still on the lander. The colored dots represent data collected by the miniature thermal emission spectrometer on sol 11, after Opportunity had rolled off of the lander and the rover was located at the center of the blue semi-circle.

    The spectrometer is located on the panoramic camera mast. On sol 11, it took a low-angle 180-degree panorama of the area in front of the rover, indicated by the blue shaded dots. The instrument then raised the angle of its field of view a few degrees higher to sweep around behind the rover, indicated by the red and yellow dots offset at the far sides of the

  10. US Department of Energy Oak Ridge Operations Environmental Management Public Involvement Plan for the Oak Ridge Reservation

    SciTech Connect

    1996-03-01

    This document was prepared in accordance with CERCLA requirements for writing community relations plans. It includes information on how the DOE Oak Ridge Operations Office prepares and executes Environmental Management Community relations activities. It is divided into three sections: the public involvement plan, public involvement in Oak Ridge, and public involvement in 1995. Four appendices are also included: environmental management in Oak Ridge; community and regional overview; key laws, agreements, and policy; and principal contacts.

  11. Red Clover Breeding Progress

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Red clover (Trifolium pratense L.) is an important forage legume grown on approximately 4 million hectares worldwide. It has a long and varied history in agriculture. Active breeding efforts began at the end of the 19th century. Since this time significant improvement in red clover cultivar for a...

  12. Cobb's Red Cabbage Indicator.

    ERIC Educational Resources Information Center

    Cobb, Vicki

    1998-01-01

    Describes the use of an indicator made from the pigment in red cabbage. Cabbage is grated then soaked in water. When the water is a strong red, the cabbage is strained out. The cabbage-juice indicator is then used to test for acids and bases. Includes a list of good foods to test for acidity and alkalinity. (PVD)

  13. Comprehensive integrated planning: A process for the Oak Ridge Reservation, Oak Ridge, Tennessee

    SciTech Connect

    1998-05-01

    The Oak Ridge Comprehensive Integrated Plan is intended to assist the US Department of Energy (DOE) and contractor personnel in implementing a comprehensive integrated planning process consistent with DOE Order 430.1, Life Cycle Asset Management and Oak Ridge Operations Order 430. DOE contractors are charged with developing and producing the Comprehensive Integrated Plan, which serves as a summary document, providing information from other planning efforts regarding vision statements, missions, contextual conditions, resources and facilities, decision processes, and stakeholder involvement. The Comprehensive Integrated Plan is a planning reference that identifies primary issues regarding major changes in land and facility use and serves all programs and functions on-site as well as the Oak Ridge Operations Office and DOE Headquarters. The Oak Ridge Reservation is a valuable national resource and is managed on the basis of the principles of ecosystem management and sustainable development and how mission, economic, ecological, social, and cultural factors are used to guide land- and facility-use decisions. The long-term goals of the comprehensive integrated planning process, in priority order, are to support DOE critical missions and to stimulate the economy while maintaining a quality environment.

  14. Toxicodendron dermatitis: poison ivy, oak, and sumac.

    PubMed

    Gladman, Aaron C

    2006-01-01

    Allergic contact dermatitis caused by the Toxicodendron (formerly Rhus) species-poison ivy, poison oak, and poison sumac-affects millions of North Americans every year. In certain outdoor occupations, for example, agriculture and forestry, as well as among many outdoor enthusiasts, Toxicodendron dermatitis presents a significant hazard. This review considers the epidemiology, identification, immunochemistry, pathophysiology, clinical features, treatment, and prevention of this common dermatologic problem. Recent research in prevention is emphasized, and resources to help in the identification of plants are provided in the bibliography. The literature was searched using a MEDLINE query for "Toxicodendron dermatitis", and the identified article bibliographies were searched as well. PMID:16805148

  15. Oak Ridge Leadership Computing Facility Position Paper

    SciTech Connect

    Oral, H Sarp; Hill, Jason J; Thach, Kevin G; Podhorszki, Norbert; Klasky, Scott A; Rogers, James H; Shipman, Galen M

    2011-01-01

    This paper discusses the business, administration, reliability, and usability aspects of storage systems at the Oak Ridge Leadership Computing Facility (OLCF). The OLCF has developed key competencies in architecting and administration of large-scale Lustre deployments as well as HPSS archival systems. Additionally as these systems are architected, deployed, and expanded over time reliability and availability factors are a primary driver. This paper focuses on the implementation of the Spider parallel Lustre file system as well as the implementation of the HPSS archive at the OLCF.

  16. Oak Ridge Mobile Agent Community (ORMAC)

    Energy Science and Technology Software Center (ESTSC)

    2003-06-30

    The Oak Ridge Mobile Agent Community (ORMAC) framework software facilitates the execution of a collection of mobile software agents across a heterogeneous collection of computer systems. ORMAC provides the software agents with the ability to communicate with each other in a synchronous and asynchronous manner. Also, ORMAC allows the software agents to move to any computer system in the community and continue execution there. ORMAC is intended to aid programmers in solving a very generalmore » set of distributed software problems.« less

  17. Jupiter's Great Red spot

    NASA Technical Reports Server (NTRS)

    1979-01-01

    This color composite made from Voyager 2 narrow-angle camera frames shows the Great Red Spot during the late Jovian afternoon. North of the Red Spot lies a curious darker section of the South Equatorial Belt (SEB), the belt in which the Red Spot is located. A bright eruption of material passing from the SEB northward into the diffuse equatorial clouds has been observed on all occasions when this feature passes north of the Red Spot. The remnants of one such eruption are apparent in this photograph. To the lower left of the Red Spot lies one of the three long-lived White Ovals. This photograph was taken on June 29, 1979, when Voyager 2 was over 9 million kilometers (nearly 6 million miles) from Jupiter. The smallest features visible are over 170 kilometers (106 miles) across.

  18. Metagenomic studies of the Red Sea.

    PubMed

    Behzad, Hayedeh; Ibarra, Martin Augusto; Mineta, Katsuhiko; Gojobori, Takashi

    2016-02-01

    Metagenomics has significantly advanced the field of marine microbial ecology, revealing the vast diversity of previously unknown microbial life forms in different marine niches. The tremendous amount of data generated has enabled identification of a large number of microbial genes (metagenomes), their community interactions, adaptation mechanisms, and their potential applications in pharmaceutical and biotechnology-based industries. Comparative metagenomics reveals that microbial diversity is a function of the local environment, meaning that unique or unusual environments typically harbor novel microbial species with unique genes and metabolic pathways. The Red Sea has an abundance of unique characteristics; however, its microbiota is one of the least studied among marine environments. The Red Sea harbors approximately 25 hot anoxic brine pools, plus a vibrant coral reef ecosystem. Physiochemical studies describe the Red Sea as an oligotrophic environment that contains one of the warmest and saltiest waters in the world with year-round high UV radiations. These characteristics are believed to have shaped the evolution of microbial communities in the Red Sea. Over-representation of genes involved in DNA repair, high-intensity light responses, and osmoregulation were found in the Red Sea metagenomic databases suggesting acquisition of specific environmental adaptation by the Red Sea microbiota. The Red Sea brine pools harbor a diverse range of halophilic and thermophilic bacterial and archaeal communities, which are potential sources of enzymes for pharmaceutical and biotechnology-based application. Understanding the mechanisms of these adaptations and their function within the larger ecosystem could also prove useful in light of predicted global warming scenarios where global ocean temperatures are expected to rise by 1-3°C in the next few decades. In this review, we provide an overview of the published metagenomic studies that were conducted in the Red Sea, and

  19. The Tale of Red Emmy: An Irish Witch in Appalachia.

    ERIC Educational Resources Information Center

    Wagaman, Gena D.

    The Appalachian "Tale of Red Emmy" presented in the novel "Oral History" by Lee Smith (1983), reveals both an Irish origin and an American transformation. Granny Younger, one of Smith's narrators, tells of a curse visited on four generations of the Cantrell family after Almarine Cantrell chanced upon the witch Red Emmy in the wilds of the…

  20. Fossil oak galls preserve ancient multitrophic interactions

    PubMed Central

    Stone, Graham N; van der Ham, Raymond W.J.M; Brewer, Jan G

    2008-01-01

    Trace fossils of insect feeding have contributed substantially to our understanding of the evolution of insect–plant interactions. The most complex phenotypes of herbivory are galls, whose diagnostic morphologies often allow the identification of the gall inducer. Although fossil insect-induced galls over 300 Myr old are known, most are two-dimensional impressions lacking adequate morphological detail either for the precise identification of the causer or for detection of the communities of specialist parasitoids and inquilines inhabiting modern plant galls. Here, we describe the first evidence for such multitrophic associations in Pleistocene fossil galls from the Eemian interglacial (130 000–115 000 years ago) of The Netherlands. The exceptionally well-preserved fossils can be attributed to extant species of Andricus gallwasps (Hymenoptera: Cynipidae) galling oaks (Quercus), and provide the first fossil evidence of gall attack by herbivorous inquiline gallwasps. Furthermore, phylogenetic placement of one fossil in a lineage showing obligate host plant alternation implies the presence of a second oak species, Quercus cerris, currently unknown from Eemian fossils in northwestern Europe. This contrasts with the southern European native range of Q. cerris in the current interglacial and suggests that gallwasp invasions following human planting of Q. cerris in northern Europe may represent a return to preglacial distribution limits. PMID:18559323

  1. The Oak Ridge Isochronous Cyclotron Refurbishment Project

    SciTech Connect

    Mendez, II, Anthony J; Ball, James B; Dowling, Darryl T; Mosko, Sigmund W; Tatum, B Alan

    2011-01-01

    The Oak Ridge Isochronous Cyclotron (ORIC) has been in operation for nearly fifty years at the Oak Ridge National Laboratory (ORNL). Presently, it serves as the driver accelerator for the ORNL Holifield Radioactive Ion Beam Facility (HRIBF), where radioactive ion beams are produced using the Isotope Separation Online (ISOL) technique for post-acceleration by the 25URC tandem electrostatic accelerator. Operability and reliability of ORIC are critical issues for the success of HRIBF and have presented increasingly difficult operational challenges for the facility in recent years. In February 2010, a trim coil failure rendered ORIC inoperable for several months. This presented HRIBF with the opportunity to undertake various repairs and maintenance upgrades aimed at restoring the full functionality of ORIC and improving the reliability to a level better than what had been typical over the previous decade. In this paper, we present details of these efforts, including the replacement of the entire trim coil set and measurements of their radial field profile. Comparison of measurements and operating tune parameters with setup code predictions will also be presented.

  2. White Oak Dam stability analysis. Volume I

    SciTech Connect

    Ahmed, S.B.

    1994-01-01

    A parametric study was conducted to evaluate the stability of the White Oak Dam (WOD) embankment and foundation. Slope stability analyses were performed for the upper and lower bound soil properties at three sections of the dam using the PCSTABL4 computer program. Minimum safety factors were calculated for the applicable seismic and static loading conditions. Liquefaction potential of the dam embankment and foundation solid during the seismic event was assessed by using simplified procedures. The WOD is classified as a low hazard facility and the Evaluation Basis Earthquake (EBE) is defined as an earthquake with a magnitude of m{sub b} = 5.6 and a Peak Ground Accelerator (PGA) of 0.13 g. This event is approximately equivalent to a Modified Mercalli Intensity of VI-VIII. The EBE is used to perform the seismic evaluation for slope stability and liquefaction potential. Results of the stability analyses and the liquefaction assessment lead to the conclusion that the White Oak Dam is safe and stable for the static and the seismic events defined in this study. Ogden Environmental, at the request of MMES, has checked and verified the calculations for the critical loading conditions and performed a peer review of this report. Ogden has determined that the WOD is stable under the defined static and seismic loading conditions and the embankment materials are in general not susceptible to liquefaction.

  3. Development of a quantitation method to assay both lyoniresinol enantiomers in wines, spirits, and oak wood by liquid chromatography-high resolution mass spectrometry.

    PubMed

    Cretin, Blandine N; Dubourdieu, Denis; Marchal, Axel

    2016-05-01

    Wine taste balance evolves during oak aging by the release of volatile and non-volatile compounds from wood. Among them, an enantiomer of lyoniresinol, (+)-lyoniresinol, has been shown to exhibit bitterness. To evaluate the impact of (+)-lyoniresinol on wine taste, a two-step quantitation method was developed and validated. First, (±)-lyoniresinol was assayed in wines, spirits, and oak wood macerates by C-18 liquid chromatography-high resolution mass spectrometry (LC-HRMS). Then, the lyoniresinol enantiomeric ratio was determined by chiral LC-HRMS in order to calculate the (+)-lyoniresinol content. In red and white wines, the average concentrations of (+)-lyoniresinol were 1.9 and 0.8 mg/L, respectively. The enantiomer proportions were not affected by bottle aging, and lyoniresinol appeared to remain stable over time. The sensory study of (+)-lyoniresinol established its perception threshold at 0.46 mg/L in wine. All the commercial wines quantitated were above this perception threshold, demonstrating its impact on wine taste by an increase in bitterness. In spirits, (+)-lyoniresinol ranged from 2.0 to 10.0 mg/L and was found to be released continuously during oak aging. Finally, neither botanical origin nor toasting was found to significantly affect the (+)-lyoniresinol content of oak wood. Graphical abstract From oak wood to wine: evaluation of the influence of (+)-lyoniresinol on the bitterness of wines and spirits. PMID:27000563

  4. Exploring the Taxonomy of Oaks and Related Tree Species

    ERIC Educational Resources Information Center

    McMaster, Robert T.

    2004-01-01

    A lab in Eastern North America conducted a study to determine the taxonomic relationship between deciduous trees and several species of oaks by calculating the similarity index of all species to be studied. The study enabled students to classify the different species of oaks according to their distinct characteristics.

  5. 1. ARROYO SECO FREEWAY SOUTHBOUND AT FAIR OAKS ON RAMP. ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    1. ARROYO SECO FREEWAY SOUTHBOUND AT FAIR OAKS ON RAMP. ABANDONED RAILROAD TRESTLE AND FREMONT AVENUE BRIDGE AT REAR. LOOKING 268°W. - Arroyo Seco Parkway, Fair Oaks Avenue Bridge, Milepost 31.17, Los Angeles, Los Angeles County, CA

  6. Oak Ridge Reservation Annual Site environmental report summary for 1994

    SciTech Connect

    1995-09-01

    This document presents a summary of the information collected for the Oak Ridge Reservation 1994 site environmental report. Topics discussed include: Oak Ridge Reservation mission; ecology; environmental laws; community participation; environmental restoration; waste management; radiation effects; chemical effects; risk to public; environmental monitoring; and radionuclide migration.

  7. 60 Years of Great Science (Oak Ridge National Laboratory)

    DOE R&D Accomplishments Database

    2003-01-01

    This issue of Oak Ridge National Laboratory Review (vol. 36, issue 1) highlights Oak Ridge National Laboratory's contributions in more than 30 areas of research and related activities during the past 60 years and provides glimpses of current activities that are carrying on this heritage.

  8. Emergence of the sudden oak death pathogen Phytophthora ramorum

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Phytophthora ramorum, the pathogen responsible for massive sudden oak death of tanoak, coast live oak and Japanese larch in the United States and the United Kingdom, is the latest example of an emerging pathogen. This review documents the emergence of P. ramorum based on detailed, recent evolutionar...

  9. Spectral Tuning of Deep Red Cone Pigments†

    PubMed Central

    Amora, Tabitha L.; Ramos, Lavoisier S.; Galan, Jhenny F.; Birge, Robert R.

    2008-01-01

    Visual pigments are G-protein-coupled receptors that provide a critical interface between organisms and their external environment. Natural selection has generated vertebrate pigments that absorb light from the far-UV (360 nm) to the deep red (630 nm) while using a single chromophore, in either the A1 (11-cis-retinal) or A2 (11-cis-3,4-dehydroretinal) form. The fact that a single chromophore can be manipulated to have an absorption maximum across such an extended spectral region is remarkable. The mechanisms of wavelength regulation remain to be fully revealed, and one of the least well-understood mechanisms is that associated with the deep red pigments. We investigate theoretically the hypothesis that deep red cone pigments select a 6-s-trans conformation of the retinal chromophore ring geometry. This conformation is in contrast to the 6-s-cis ring geometry observed in rhodopsin and, through model chromophore studies, the vast majority of visual pigments. Nomographic spectral analysis of 294 A1 and A2 cone pigment literature absorption maxima indicates that the selection of a 6-s-trans geometry red shifts M/LWS A1 pigments by ~1500 cm−1 (~50 nm) and A2 pigments by ~2700 cm−1 (~100 nm). The homology models of seven cone pigments indicate that the deep red cone pigments select 6-s-trans chromophore conformations primarily via electrostatic steering. Our results reveal that the generation of a 6-s-trans conformation not only achieves a significant red shift but also provides enhanced stability of the chromophore within the deep red cone pigment binding sites. PMID:18370404

  10. Not all oak gall wasps gall oaks: the description of Dryocosmus rileypokei, a new, apostate species of Cynipini from California

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Cynipini gall wasps are commonly known as oak gall wasps for their almost exclusive use of oak (Quercus spp.) as their host plant. Previously, only three of the nearly1000 species of Cynipini have been recorded from a host plant other than Quercus. These three species are known from western chinqu...