NASA Astrophysics Data System (ADS)
Song, Huimin
In the aerospace and automotive industries, many finite element analyses use lower-dimensional finite elements such as beams, plates and shells, to simplify the modeling. These simplified models can greatly reduce the computation time and cost; however, reduced-dimensional models may introduce inaccuracies, particularly near boundaries and near portions of the structure where reduced-dimensional models may not apply. Another factor in creation of such models is that beam-like structures frequently have complex geometry, boundaries and loading conditions, which may make them unsuitable for modeling with single type of element. The goal of this dissertation is to develop a method that can accurately and efficiently capture the response of a structure by rigorous combination of a reduced-dimensional beam finite element model with a model based on full two-dimensional (2D) or three-dimensional (3D) finite elements. The first chapter of the thesis gives the background of the present work and some related previous work. The second chapter is focused on formulating a system of equations that govern the joining of a 2D model with a beam model for planar deformation. The essential aspect of this formulation is to find the transformation matrices to achieve deflection and load continuity on the interface. Three approaches are provided to obtain the transformation matrices. An example based on joining a beam to a 2D finite element model is examined, and the accuracy of the analysis is studied by comparing joint results with the full 2D analysis. The third chapter is focused on formulating the system of equations for joining a beam to a 3D finite element model for static and free-vibration problems. The transition between the 3D elements and beam elements is achieved by use of the stress recovery technique of the variational-asymptotic method as implemented in VABS (the Variational Asymptotic Beam Section analysis). The formulations for an interface transformation matrix and
A Reduced Order, One Dimensional Model of Joint Response
DOHNER,JEFFREY L.
2000-11-06
As a joint is loaded, the tangent stiffness of the joint reduces due to slip at interfaces. This stiffness reduction continues until the direction of the applied load is reversed or the total interface slips. Total interface slippage in joints is called macro-slip. For joints not undergoing macro-slip, when load reversal occurs the tangent stiffness immediately rebounds to its maximum value. This occurs due to stiction effects at the interface. Thus, for periodic loads, a softening and rebound hardening cycle is produced which defines a hysteretic, energy absorbing trajectory. For many jointed sub-structures, this hysteretic trajectory can be approximated using simple polynomial representations. This allows for complex joint substructures to be represented using simple non-linear models. In this paper a simple one dimensional model is discussed.
SCALING ANALYSIS OF REPOSITORY HEAT LOAD FOR REDUCED DIMENSIONALITY MODELS
MICHAEL T. ITAMUA AND CLIFFORD K. HO
1998-06-04
The thermal energy released from the waste packages emplaced in the potential Yucca Mountain repository is expected to result in changes in the repository temperature, relative humidity, air mass fraction, gas flow rates, and other parameters that are important input into the models used to calculate the performance of the engineered system components. In particular, the waste package degradation models require input from thermal-hydrologic models that have higher resolution than those currently used to simulate the T/H responses at the mountain-scale. Therefore, a combination of mountain- and drift-scale T/H models is being used to generate the drift thermal-hydrologic environment.
A Reduced Three Dimensional Model for SAW Sensors Using Finite Element Analysis
El Gowini, Mohamed M.; Moussa, Walied A.
2009-01-01
A major problem that often arises in modeling Micro Electro Mechanical Systems (MEMS) such as Surface Acoustic Wave (SAW) sensors using Finite Element Analysis (FEA) is the extensive computational capacity required. In this study a new approach is adopted to significantly reduce the computational capacity needed for analyzing the response of a SAW sensor using the finite element (FE) method. The approach is based on the plane wave solution where the properties of the wave vary in two dimensions and are uniform along the thickness of the device. The plane wave solution therefore allows the thickness of the SAW device model to be minimized; the model is referred to as a Reduced 3D Model (R3D). Various configurations of this novel R3D model are developed and compared with theoretical and experimental frequency data and the results show very good agreement. In addition, two-dimensional (2D) models with similar configurations to the R3D are developed for comparison since the 2D approach is widely adopted in the literature as a computationally inexpensive approach to model SAW sensors using the FE method. Results illustrate that the R3D model is capable of capturing the SAW response more accurately than the 2D model; this is demonstrated by comparison of centre frequency and insertion loss values. These results are very encouraging and indicate that the R3D model is capable of capturing the MEMS-based SAW sensor response without being computationally expensive. PMID:22303156
A reduced-order vortex model of three-dimensional unsteady non-linear aerodynamics
NASA Astrophysics Data System (ADS)
Eldredge, Jeff D.
2014-11-01
Rapid, large-amplitude maneuvers of low aspect ratio wings are inherent to biologically-inspired flight. These give rise to unsteady phenomena associated with the interactions among the coherent structures shed from wing edges. The objective of this work is to distill these phenomena into a low-order physics-based dynamical model. The model is based on interconnected vortex loops, composed of linear segments between a small number of vertices. Thus, the dynamics of the fluid are reduced to tracking the evolution of the vertices, whose motions are determined from the velocity field induced by the loops and wing motion. The feature that distinguishes this method from previous treatments is that the vortex loops, analogous to point vortices in our two-dimensional model, have time-varying strength. That is, the flux of vorticity from the wing is concentrated in the constituent segments. Chains of interconnected loops can be shed from any edge of the wing. The evolution equation for the loop vertices is based on the impulse matching principle developed in previous work. We demonstrate the model in various maneuvers, including impulse starts of low aspect ratio wings, oscillatory pitching, etc., and compare with experimental results and high-fidelity simulations where applicable. This work was supported by AFOSR under Award FA9550-11-1-0098.
Forward Modeling of Reduced Power Spectra from Three-dimensional k-space
NASA Astrophysics Data System (ADS)
von Papen, Michael; Saur, Joachim
2015-06-01
We present results from a numerical forward model to evaluate one-dimensional reduced power spectral densities (PSDs) from arbitrary energy distributions in {\\boldsymbol{k}} -space. In this model, we can separately calculate the diagonal elements of the spectral tensor for incompressible axisymmetric turbulence with vanishing helicity. Given a critically balanced turbulent cascade with {{k}\\parallel }∼ k\\bot α and α \\lt 1, we explore the implications on the reduced PSD as a function of frequency. The spectra are obtained under the assumption of Taylor’s hypothesis. We further investigate the functional dependence of the spectral index κ on the field-to-flow angle θ between plasma flow and background magnetic field from MHD to electron kinetic scales. We show that critically balanced turbulence asymptotically develops toward θ-independent spectra with a slope corresponding to the perpendicular cascade. This occurs at a transition frequency {{f}2D}(L,α ,θ ), which is analytically estimated and depends on outer scale L, critical balance exponent α, and field-to-flow angle θ. We discuss anisotropic damping terms acting on the {\\boldsymbol{k}} -space distribution of energy and their effects on the PSD. Further, we show that the spectral anisotropies κ (θ ) as found by Horbury et al. and Chen et al. in the solar wind are in accordance with a damped critically balanced cascade of kinetic Alfvén waves. We also model power spectra obtained by Papen et al. in Saturn’s plasma sheet and find that the change of spectral indices inside 9 {{R}s} can be explained by damping on electron scales.
Experimental validation of a three-dimensional reduced-order continuum model of phonation.
Farahani, Mehrdad H; Zhang, Zhaoyan
2016-08-01
Due to the complex nature of the phonation process, a one-dimensional (1D) glottal flow description is often used in current phonation models. Although widely used in voice research, these 1D flow-based phonation models have not been rigorously validated against experiments. In this study, a 1D glottal flow model is coupled with a three-dimensional nonlinear continuum model of the vocal fold and its predictions are compared to physical model experiments. The results show that the 1D flow-based model is able to predict the phonation threshold pressure and onset frequency within reasonable accuracy and to reproduce major vibratory features observed in the experiments. PMID:27586776
NASA Astrophysics Data System (ADS)
Wang, Shuai; Wang, Yu; Zi, Yanyang; Li, Bing; He, Zhengjia
2015-10-01
A novel reduced-order modeling method is presented in this paper for dynamics analysis of rotating impeller-shaft-bearing assembly with cracked impellers. Based on three-dimensional finite element model, the complex component mode synthesis (CMS) method is employed to generate an efficient reduced-order model (ROM) for studying the effects of crack on the global vibration of the rotating assembly. First, a modeling framework for impeller-shaft-bearing systems in rotating frame is presented. Rotational effects, including Coriolis matrix and centrifugal softening, have been taken into account. Then, the governing equation of motion of the damped gyroscopic system is reduced by the complex CMS method. Finally, the obtained ROM is employed to study the effects of crack on assembly's vibration. During the steady-state response analysis, external excitations on the impeller due to rotor-stator interactions have been taken into account, which was however neglected in previous investigations on rotordynamics. Numerical results show that the lower-order eigenvalues and the unbalance response of the assembly are not sensitive to the local crack on impeller. Nevertheless, the flexible coupling between impeller and shaft becomes more complex when the air flow-induced excitations are considered. Under EO1 traveling wave excitations, a crack leads to slight changes in the assembly's response. In contrast, the effect of crack becomes significant when the assembly is excited by EO2 and higher EO excitations. Moreover, the nonlinear crack breathing effects affect the assembly's response obviously. Finally, a potential technique for detecting the crack on impeller during operation is discussed.
Assimilating in-situ Measurements into a Reduced-Dimensionality Model of an Estuary- Plume System.
NASA Astrophysics Data System (ADS)
Frolov, S.; Baptista, A.; Leen, T.; Lu, Z.; van der Merwe, R.
2006-12-01
A very fast, model independent, fully non-linear extension to the reduced space Kalman filter has been recently proposed and demonstrated for the assimilation of the non-linear circulation in both a synthetic estuary and in the river-dominated Columbia River estuary. Here, we extend the application to another complex problem the simulation of a coupled estuary-plume system. Our data assimilation method is based on the same three stages as in our previous work: (1) generate a database of hindcast runs with a forward numerical circulation model like SELFE; (2) use examples from the hindcast database to train a fast, non-linear neural network model surrogate that approximates the dynamics of the forward model; and (3) use a Sigma Point Kalman filter, incorporating the model surrogate dynamics, to estimate the true state of the system. Both model surrogates (2) and state estimation (3) operate in the reduced space spanned by the Empirical Orthogonal Functions (EOFs, aka principal components). The key modifications that we are introducing are the improved EOF analysis for more accurate dimension reduction in the plume region, a more compact noise model for faster DA, and the improved treatment of wetting and drying. The resulting data assimilation system is ~100 faster than the forward model and ~10000 faster than the existing variational and sequential methods for data assimilation. As a test of the system, we assimilate in-situ data from four offshore moorings and 14 estuarine stations during May-September of 2004. For validation of the experiments we use cross-validation against in-situ data, data from research cruises, and satellite imagery. We show that data assimilation is effective for improving the simulation of at least three highly non-linear processes: the dynamics of the estuarine salt-wedge, the response of the plume to wind shifts, the propagation of the shallow water tides, and wetting and drying of tidal flats.
A reduced-dimensional model for near-wall transport in cardiovascular flows.
Hansen, Kirk B; Shadden, Shawn C
2016-06-01
Near-wall mass transport plays an important role in many cardiovascular processes, including the initiation of atherosclerosis, endothelial cell vasoregulation, and thrombogenesis. These problems are characterized by large Péclet and Schmidt numbers as well as a wide range of spatial and temporal scales, all of which impose computational difficulties. In this work, we develop an analytical relationship between the flow field and near-wall mass transport for high-Schmidt-number flows. This allows for the development of a wall-shear-stress-driven transport equation that lies on a codimension-one vessel-wall surface, significantly reducing computational cost in solving the transport problem. Separate versions of this equation are developed for the reaction-rate-limited and transport-limited cases, and numerical results in an idealized abdominal aortic aneurysm are compared to those obtained by solving the full transport equations over the entire domain. The reaction-rate-limited model matches the expected results well. The transport-limited model is accurate in the developed flow regions, but overpredicts wall flux at entry regions and reattachment points in the flow. PMID:26298313
Supersymmetric soliton solution in a dimensionally reduced Schroedinger-Chern-Simons model
Sourrouille, Lucas
2011-02-15
We obtain, by dimensional reduction, a (1+1) supersymmetric system introduced in the description of ultracold quantum gases. The correct supercharges are identified and their algebra is constructed. Finally, novel solitonic equations emerge and their solution is constructed for the bosonic case.
NASA Astrophysics Data System (ADS)
Easy, L.; Militello, F.; Omotani, J.; Dudson, B.; Havlíčková, E.; Tamain, P.; Naulin, V.; Nielsen, A. H.
2014-12-01
This paper presents simulations of isolated 3D filaments in a slab geometry obtained using a newly developed 3D reduced fluid code, written using the BOUT++ framework. First, systematic scans were performed to investigate how the dynamics of a filament are affected by its amplitude, perpendicular size, and parallel extent. The perpendicular size of the filament was found to have a strong influence on its motions, as it determined the relative importance of parallel currents to polarization and viscous currents, whilst drift-wave instabilities were observed if the initial amplitude of the blob was increased sufficiently. Next, the 3D simulations were compared to 2D simulations using different parallel closures; namely, the sheath dissipation closure, which neglects parallel gradients, and the vorticity advection closure, which neglects the influence of parallel currents. The vorticity advection closure was found to not replicate the 3D perpendicular dynamics and overestimated the initial radial acceleration of all the filaments studied. In contrast, a more satisfactory comparison with the sheath dissipation closure was obtained, even in the presence of significant parallel gradients, where the closure is no longer valid. Specifically, it captured the contrasting dynamics of filaments with different perpendicular sizes that were observed in the 3D simulations which the vorticity advection closure failed to replicate. However, neither closure successfully replicated the Boltzmann spinning effects nor the associated poloidal drift of the blob that was observed in the 3D simulations. Although the sheath dissipation closure was concluded to be more successful in replicating the 3D dynamics, it is emphasized that the vorticity advection closure may still be relevant for situations where the parallel current is inhibited from closing through the sheath due to effects such as strong magnetic shear around X points or increased resistivity near the targets.
Dimensionally reduced emulation of an AOGCM for application to integrated assessment modelling
NASA Astrophysics Data System (ADS)
Holden, P. B.; Edwards, N. R.
2010-11-01
Integrated Assessment Models are widely used tools for the evaluation of environmental policy. In order to include uncertainty estimates or derive optimal policies, highly efficient calculations of global change are generally required, often using pattern scaling to derive spatial distributions of change. Here we develop an alternative to pattern scaling that allows for nonlinear spatio-temporal behaviour. We use an intermediate complexity AOGCM to perform an ensemble of simulations for a range of greenhouse gas concentration profiles and model parameters. We decompose climate change fields into a series of spatial patterns and then derive the functional dependence of the dominant patterns on model input. This allows us to rapidly reconstruct a good approximation to the simulated change from an arbitrary concentration profile (without the need for further simulation). The efficiency of the approach paves the way for incorporating improved calculations of climate change into integrated assessment, including location-dependent estimates of uncertainty.
Vikár, Anna; Nagy, Tibor; Lendvay, György
2016-07-14
Application of exact quantum scattering methods in theoretical reaction dynamics of bimolecular reactions is limited by the complexity of the equations of nuclear motion to be solved. Simplification is often achieved by reducing the number of degrees of freedom to be explicitly handled by freezing the less important spectator modes. The reaction cross sections obtained in reduced-dimensionality (RD) quantum scattering methods can be used in the calculation of rate coefficients, but their physical meaning is limited. The accurate test of the performance of a reduced-dimensionality method would be a comparison of the RD cross sections with those obtained in accurate full-dimensional (FD) calculations, which is not feasible because of the lack of complete full-dimensional results. However, classical mechanics allows one to perform reaction dynamics calculations using both the RD and the FD model. In this paper, an RD versus FD comparison is made for the 8-dimensional Palma-Clary model on the example of four isotopologs of the CH4 + H → CH3 + H2 reaction, which has 12 internal dimensions. In the Palma-Clary model, the only restriction is that the methyl group is confined to maintain C3v symmetry. Both RD and FD opacity and excitation functions as well as differential cross sections were calculated using the quasiclassical trajectory method. The initial reactant separation has been handled according to our one-period averaging method [ Nagy et al. J. Chem. Phys. 2016, 144, 014104 ]. The RD and FD excitation functions were found to be close to each other for some isotopologs, but in general, the RD reactivity parameters are lower than the FD reactivity parameters beyond statistical error, and for one of the isotopologs, the deviation is significant. This indicates that the goodness of RD cross sections cannot be taken for granted. PMID:26918703
Emergent reduced dimensionality by vertex frustration in artificial spin ice
NASA Astrophysics Data System (ADS)
Gilbert, Ian; Lao, Yuyang; Carrasquillo, Isaac; O'Brien, Liam; Watts, Justin D.; Manno, Michael; Leighton, Chris; Scholl, Andreas; Nisoli, Cristiano; Schiffer, Peter
2016-02-01
Reducing the dimensionality of a physical system can have a profound effect on its properties, as in the ordering of low-dimensional magnetic materials, phonon dispersion in mercury chain salts, sliding phases, and the electronic states of graphene. Here we explore the emergence of quasi-one-dimensional behaviour in two-dimensional artificial spin ice, a class of lithographically fabricated nanomagnet arrays used to study geometrical frustration. We extend the implementation of artificial spin ice by fabricating a new array geometry, the so-called tetris lattice. We demonstrate that the ground state of the tetris lattice consists of alternating ordered and disordered bands of nanomagnetic moments. The disordered bands can be mapped onto an emergent thermal one-dimensional Ising model. Furthermore, we show that the level of degeneracy associated with these bands dictates the susceptibility of island moments to thermally induced reversals, thus establishing that vertex frustration can reduce the relevant dimensionality of physical behaviour in a magnetic system.
Booth-Gauthier, Elizabeth A; Du, Vicard; Ghibaudo, Marion; Rape, Andrew D; Dahl, Kris Noel; Ladoux, Benoit
2013-03-01
Cell migration through tight interstitial spaces in three dimensional (3D) environments impacts development, wound healing and cancer metastasis and is altered by the aging process. The stiffness of the extracellular matrix (ECM) increases with aging and affects the cells and cytoskeletal processes involved in cell migration. However, the nucleus, which is the largest and densest organelle, has not been widely studied during cell migration through the ECM. Additionally, the nucleus is stiffened during the aging process through the accumulation of a mutant nucleoskeleton protein lamin A, progerin. By using microfabricated substrates to mimic the confined environment of surrounding tissues, we characterized nuclear movements and deformation during cell migration into micropillars where interspacing can be tuned to vary nuclear confinement. Cell motility decreased with decreased micropillar (μP) spacing and correlated with increased dysmorphic shapes of nuclei. We examined the effects of increased nuclear stiffness which correlates with cellular aging by studying Hutchinson-Gilford progeria syndrome cells which are known to accumulate progerin. With the expression of progerin, cells showed a threshold response to decreased μP spacing. Cells became trapped in the close spacing, possibly from visible micro-defects in the nucleoskeleton induced by cell crawling through the μP and from reduced force generation, measured independently. We suggest that ECM changes during aging could be compounded by the increasing stiffness of the nucleus and thus changes in cell migration through 3D tissues. PMID:23370891
Ligand-Stabilized Reduced-Dimensionality Perovskites.
Quan, Li Na; Yuan, Mingjian; Comin, Riccardo; Voznyy, Oleksandr; Beauregard, Eric M; Hoogland, Sjoerd; Buin, Andrei; Kirmani, Ahmad R; Zhao, Kui; Amassian, Aram; Kim, Dong Ha; Sargent, Edward H
2016-03-01
Metal halide perovskites have rapidly advanced thin-film photovoltaic performance; as a result, the materials' observed instabilities urgently require a solution. Using density functional theory (DFT), we show that a low energy of formation, exacerbated in the presence of humidity, explains the propensity of perovskites to decompose back into their precursors. We find, also using DFT, that intercalation of phenylethylammonium between perovskite layers introduces quantitatively appreciable van der Waals interactions. These drive an increased formation energy and should therefore improve material stability. Here we report reduced-dimensionality (quasi-2D) perovskite films that exhibit improved stability while retaining the high performance of conventional three-dimensional perovskites. Continuous tuning of the dimensionality, as assessed using photophysical studies, is achieved by the choice of stoichiometry in materials synthesis. We achieve the first certified hysteresis-free solar power conversion in a planar perovskite solar cell, obtaining a 15.3% certified PCE, and observe greatly improved performance longevity. PMID:26841130
Ternès, Nils; Rotolo, Federico; Michiels, Stefan
2016-07-10
Correct selection of prognostic biomarkers among multiple candidates is becoming increasingly challenging as the dimensionality of biological data becomes higher. Therefore, minimizing the false discovery rate (FDR) is of primary importance, while a low false negative rate (FNR) is a complementary measure. The lasso is a popular selection method in Cox regression, but its results depend heavily on the penalty parameter λ. Usually, λ is chosen using maximum cross-validated log-likelihood (max-cvl). However, this method has often a very high FDR. We review methods for a more conservative choice of λ. We propose an empirical extension of the cvl by adding a penalization term, which trades off between the goodness-of-fit and the parsimony of the model, leading to the selection of fewer biomarkers and, as we show, to the reduction of the FDR without large increase in FNR. We conducted a simulation study considering null and moderately sparse alternative scenarios and compared our approach with the standard lasso and 10 other competitors: Akaike information criterion (AIC), corrected AIC, Bayesian information criterion (BIC), extended BIC, Hannan and Quinn information criterion (HQIC), risk information criterion (RIC), one-standard-error rule, adaptive lasso, stability selection, and percentile lasso. Our extension achieved the best compromise across all the scenarios between a reduction of the FDR and a limited raise of the FNR, followed by the AIC, the RIC, and the adaptive lasso, which performed well in some settings. We illustrate the methods using gene expression data of 523 breast cancer patients. In conclusion, we propose to apply our extension to the lasso whenever a stringent FDR with a limited FNR is targeted. Copyright © 2016 John Wiley & Sons, Ltd. PMID:26970107
Stimuli Reduce the Dimensionality of Cortical Activity.
Mazzucato, Luca; Fontanini, Alfredo; La Camera, Giancarlo
2016-01-01
The activity of ensembles of simultaneously recorded neurons can be represented as a set of points in the space of firing rates. Even though the dimension of this space is equal to the ensemble size, neural activity can be effectively localized on smaller subspaces. The dimensionality of the neural space is an important determinant of the computational tasks supported by the neural activity. Here, we investigate the dimensionality of neural ensembles from the sensory cortex of alert rats during periods of ongoing (inter-trial) and stimulus-evoked activity. We find that dimensionality grows linearly with ensemble size, and grows significantly faster during ongoing activity compared to evoked activity. We explain these results using a spiking network model based on a clustered architecture. The model captures the difference in growth rate between ongoing and evoked activity and predicts a characteristic scaling with ensemble size that could be tested in high-density multi-electrode recordings. Moreover, we present a simple theory that predicts the existence of an upper bound on dimensionality. This upper bound is inversely proportional to the amount of pair-wise correlations and, compared to a homogeneous network without clusters, it is larger by a factor equal to the number of clusters. The empirical estimation of such bounds depends on the number and duration of trials and is well predicted by the theory. Together, these results provide a framework to analyze neural dimensionality in alert animals, its behavior under stimulus presentation, and its theoretical dependence on ensemble size, number of clusters, and correlations in spiking network models. PMID:26924968
Stimuli Reduce the Dimensionality of Cortical Activity
Mazzucato, Luca; Fontanini, Alfredo; La Camera, Giancarlo
2016-01-01
The activity of ensembles of simultaneously recorded neurons can be represented as a set of points in the space of firing rates. Even though the dimension of this space is equal to the ensemble size, neural activity can be effectively localized on smaller subspaces. The dimensionality of the neural space is an important determinant of the computational tasks supported by the neural activity. Here, we investigate the dimensionality of neural ensembles from the sensory cortex of alert rats during periods of ongoing (inter-trial) and stimulus-evoked activity. We find that dimensionality grows linearly with ensemble size, and grows significantly faster during ongoing activity compared to evoked activity. We explain these results using a spiking network model based on a clustered architecture. The model captures the difference in growth rate between ongoing and evoked activity and predicts a characteristic scaling with ensemble size that could be tested in high-density multi-electrode recordings. Moreover, we present a simple theory that predicts the existence of an upper bound on dimensionality. This upper bound is inversely proportional to the amount of pair-wise correlations and, compared to a homogeneous network without clusters, it is larger by a factor equal to the number of clusters. The empirical estimation of such bounds depends on the number and duration of trials and is well predicted by the theory. Together, these results provide a framework to analyze neural dimensionality in alert animals, its behavior under stimulus presentation, and its theoretical dependence on ensemble size, number of clusters, and correlations in spiking network models. PMID:26924968
NASA Technical Reports Server (NTRS)
Patel, Umesh D.; Torre, Edward Della; Day, John H. (Technical Monitor)
2002-01-01
A new vector Preisach model, called the Reduced Vector Preisach model (RVPM), was developed for fast computations. This model, derived from the Simplified Vector Preisach model (SVPM), has individual components that like the SVPM are calculated independently using coupled selection rules for the state vector computation. However, the RVPM does not require the rotational correction. Therefore, it provides a practical alternative for computing the magnetic susceptibility using a differential approach. A vector version, using the framework of the DOK model, is implemented. Simulation results for the reduced vector Preisach model are also presented.
Do muscle synergies reduce the dimensionality of behavior?
Kuppuswamy, Naveen; Harris, Christopher M.
2014-01-01
The muscle synergy hypothesis is an archetype of the notion of Dimensionality Reduction (DR) occurring in the central nervous system due to modular organization. Toward validating this hypothesis, it is important to understand if muscle synergies can reduce the state-space dimensionality while maintaining task control. In this paper we present a scheme for investigating this reduction utilizing the temporal muscle synergy formulation. Our approach is based on the observation that constraining the control input to a weighted combination of temporal muscle synergies also constrains the dynamic behavior of a system in a trajectory-specific manner. We compute this constrained reformulation of system dynamics and then use the method of system balancing for quantifying the DR; we term this approach as Trajectory Specific Dimensionality Analysis (TSDA). We then investigate the consequence of minimization of the dimensionality for a given task. These methods are tested in simulations on a linear (tethered mass) and a non-linear (compliant kinematic chain) system. Dimensionality of various reaching trajectories is compared when using idealized temporal synergies. We show that as a consequence of this Minimum Dimensional Control (MDC) model, smooth straight-line Cartesian trajectories with bell-shaped velocity profiles emerged as the optima for the reaching task. We also investigated the effect on dimensionality due to adding via-points to a trajectory. The results indicate that a trajectory and synergy basis specific DR of behavior results from muscle synergy control. The implications of these results for the synergy hypothesis, optimal motor control, motor development, and robotics are discussed. PMID:25002844
Musser, Jonathan W.
2008-01-01
Potential flow characteristics of future flooding along a 4.8-mile reach of the Flint River in Albany, Georgia, were simulated using recent digital-elevation-model data and the U.S. Geological Survey finite-element surface-water modeling system for two-dimensional flow in the horizontal plane (FESWMS-2DH). The model was run at four water-surface altitudes at the Flint River at Albany streamgage (02352500): 181.5-foot (ft) altitude with a flow of 61,100 cubic feet per second (ft3/s), 184.5-ft altitude with a flow of 75,400 ft3/s, 187.5-ft altitude with a flow of 91,700 ft3/s, and 192.5-ft altitude with a flow of 123,000 ft3/s. The model was run to measure changes in inundated areas and water-surface altitudes for eight scenarios of possible modifications to the 4.8-mile reach on the Flint River. The eight scenarios include removing a human-made peninsula located downstream from Oglethorpe Boulevard, increasing the opening under the Oakridge Drive bridge, adding culverts to the east Oakridge Drive bridge approach, adding culverts to the east and west Oakridge Drive bridge approaches, adding an overflow across the oxbow north of Oakridge Drive, making the overflow into a channel, removing the Oakridge Drive bridge, and adding a combination of an oxbow overflow and culverts on both Oakridge Drive bridge approaches. The modeled inundation and water-surface altitude changes were mapped for use in evaluating the river modifications. The most effective scenario at reducing inundated area was the combination scenario. At the 187.5-ft altitude, the inundated area decreased from 4.24 square miles to 4.00 square miles. The remove-peninsula scenario was the least effective with a reduction in inundated area of less than 0.01 square miles. In all scenarios, the inundated area reduction increased with water-surface altitude, peaking at the 187.5-ft altitude. The inundated area reduction then decreased at the gage altitude of 192.5 ft.
Reducing the dimensionality of data with neural networks.
Hinton, G E; Salakhutdinov, R R
2006-07-28
High-dimensional data can be converted to low-dimensional codes by training a multilayer neural network with a small central layer to reconstruct high-dimensional input vectors. Gradient descent can be used for fine-tuning the weights in such "autoencoder" networks, but this works well only if the initial weights are close to a good solution. We describe an effective way of initializing the weights that allows deep autoencoder networks to learn low-dimensional codes that work much better than principal components analysis as a tool to reduce the dimensionality of data. PMID:16873662
Reduced basis ANOVA methods for partial differential equations with high-dimensional random inputs
NASA Astrophysics Data System (ADS)
Liao, Qifeng; Lin, Guang
2016-07-01
In this paper we present a reduced basis ANOVA approach for partial deferential equations (PDEs) with random inputs. The ANOVA method combined with stochastic collocation methods provides model reduction in high-dimensional parameter space through decomposing high-dimensional inputs into unions of low-dimensional inputs. In this work, to further reduce the computational cost, we investigate spatial low-rank structures in the ANOVA-collocation method, and develop efficient spatial model reduction techniques using hierarchically generated reduced bases. We present a general mathematical framework of the methodology, validate its accuracy and demonstrate its efficiency with numerical experiments.
Leahy, P.P.
1982-01-01
The Trescott computer program for modeling groundwater flow in three dimensions has been modified to (1) treat aquifer and confining bed pinchouts more realistically and (2) reduce the computer memory requirements needed for the input data. Using the original program, simulation of aquifer systems with nonrectangular external boundaries may result in a large number of nodes that are not involved in the numerical solution of the problem, but require computer storage. (USGS)
Qin, G.; Shalchi, A.
2015-01-15
A fundamental statement in diffusion theory is provided by the so-called theorem on reduced dimensionality. The latter theorem is saying that if the dimensionality of the turbulence is reduced, charged particles are tied to a single magnetic field line. If there is pitch-angle scattering and therewith parallel diffusion, this usually means that perpendicular transport is subdiffusive. Subdiffusive transport was found in numerous simulations for slab turbulence. However, it was unclear whether the theorem is valid for other models with reduced dimensionality such as the two-dimensional model. In the current paper, we simultaneously trace magnetic field lines and energetic particles and we compute the distance between the particle and the initial field line. We confirm the aforementioned theorem for slab turbulence but we cannot confirm it for two-dimensional turbulence. We also show that particles are not tied to field lines for two-component turbulence.
Dimensional models of personality disorder
WIDIGER, THOMAS A
2007-01-01
There is little doubt that someday the classification of personality disorder will be dimensional. The failures of the categorical model are so many and are so well established that it is difficult to imagine that this model will ultimately survive. This paper provides a brief discussion of the major alternative proposals for a dimensional classification of personality disorder. It is possible that the authors of a future edition of a psychiatric diagnostic manual will simply choose one of these alternative proposals. However, the ideal solution might be to develop a common, integrative representation including the important contributions of each of the models. PMID:18235857
Dimensionality reduction in epidemic spreading models
NASA Astrophysics Data System (ADS)
Frasca, M.; Rizzo, A.; Gallo, L.; Fortuna, L.; Porfiri, M.
2015-09-01
Complex dynamical systems often exhibit collective dynamics that are well described by a reduced set of key variables in a low-dimensional space. Such a low-dimensional description offers a privileged perspective to understand the system behavior across temporal and spatial scales. In this work, we propose a data-driven approach to establish low-dimensional representations of large epidemic datasets by using a dimensionality reduction algorithm based on isometric features mapping (ISOMAP). We demonstrate our approach on synthetic data for epidemic spreading in a population of mobile individuals. We find that ISOMAP is successful in embedding high-dimensional data into a low-dimensional manifold, whose topological features are associated with the epidemic outbreak. Across a range of simulation parameters and model instances, we observe that epidemic outbreaks are embedded into a family of closed curves in a three-dimensional space, in which neighboring points pertain to instants that are close in time. The orientation of each curve is unique to a specific outbreak, and the coordinates correlate with the number of infected individuals. A low-dimensional description of epidemic spreading is expected to improve our understanding of the role of individual response on the outbreak dynamics, inform the selection of meaningful global observables, and, possibly, aid in the design of control and quarantine procedures.
Electronic, Optical, and Thermal Properties of Reduced-Dimensional Semiconductors
NASA Astrophysics Data System (ADS)
Huang, Shouting
Reduced-dimensional materials have attracted tremendous attention because of their new physics and exotic properties, which are of great interests for fundamental science. More importantly, the manipulation and engineering of matter on an atomic scale yield promising applications for many fields including nanoelectronics, nanobiotechnology, environments, and renewable energy. Because of the unusual quantum confinement and enhanced surface effect of reduced-dimensional materials, traditional empirical models suffer from necessary but unreliable parameters extracted from previously-studied bulk materials. In this sense, quantitative, parameter-free approaches are highly useful for understanding properties of reduced-dimensional materials and, furthermore, predicting their novel applications. The first-principles density functional theory (DFT) is proven to be a reliable and convenient tool. In particular, recent progress in many-body perturbation theory (MBPT) makes it possible to calculate excited-state properties, e.g., quasiparticle (QP) band gap and optical excitations, by the first-principles approach based on DFT. Therefore, during my PhD study, I employed first-principles calculations based on DFT and MBPT to systematically study fundamental properties of typical reduced-dimensional semiconductors, i.e., the electronic structure, phonons, and optical excitations of core-shell nanowires (NWs) and graphene-like two-dimensional (2D) structures of current interests. First, I present first-principles studies on how to engineer band alignments of nano-sized radial heterojunctions, Si/Ge core-shell NWs. Our calculation reveals that band offsets in these one-dimensional (1D) nanostructures can be tailored by applying axial strain or varying core-shell sizes. In particular, the valence band offset can be efficiently tuned across a wide range and even be diminished via applied strain. Two mechanisms contribute to this tuning of band offsets. Furthermore, varying the
Schiek, Richard
2006-06-20
A method of generating two-dimensional masks from a three-dimensional model comprises providing a three-dimensional model representing a micro-electro-mechanical structure for manufacture and a description of process mask requirements, reducing the three-dimensional model to a topological description of unique cross sections, and selecting candidate masks from the unique cross sections and the cross section topology. The method further can comprise reconciling the candidate masks based on the process mask requirements description to produce two-dimensional process masks.
Reduced order modeling of wall turbulence
NASA Astrophysics Data System (ADS)
Moin, Parviz
2015-11-01
Modeling turbulent flow near a wall is a pacing item in computational fluid dynamics for aerospace applications and geophysical flows. Gradual progress has been made in statistical modeling of near wall turbulence using the Reynolds averaged equations of motion, an area of research where John Lumley has made numerous seminal contributions. More recently, Lumley and co-workers pioneered dynamical systems modeling of near wall turbulence, and demonstrated that the experimentally observed turbulence dynamics can be predicted using low dimensional dynamical systems. The discovery of minimal flow unit provides further evidence that the near wall turbulence is amenable to reduced order modeling. The underlying rationale for potential success in using low dimensional dynamical systems theory is based on the fact that the Reynolds number is low in close proximity to the wall. Presumably for the same reason, low dimensional models are expected to be successful in modeling of the laminar/turbulence transition region. This has been shown recently using dynamic mode decomposition. Furthermore, it is shown that the near wall flow structure and statistics in the late and non-linear transition region is strikingly similar to that in higher Reynolds number fully developed turbulence. In this presentation, I will argue that the accumulated evidence suggests that wall modeling for LES using low dimensional dynamical systems is a profitable avenue to pursue. The main challenge would be the numerical integration of such wall models in LES methodology.
Determining Reduced Order Models for Optimal Stochastic Reduced Order Models
Bonney, Matthew S.; Brake, Matthew R.W.
2015-08-01
The use of parameterized reduced order models(PROMs) within the stochastic reduced order model (SROM) framework is a logical progression for both methods. In this report, five different parameterized reduced order models are selected and critiqued against the other models along with truth model for the example of the Brake-Reuss beam. The models are: a Taylor series using finite difference, a proper orthogonal decomposition of the the output, a Craig-Bampton representation of the model, a method that uses Hyper-Dual numbers to determine the sensitivities, and a Meta-Model method that uses the Hyper-Dual results and constructs a polynomial curve to better represent the output data. The methods are compared against a parameter sweep and a distribution propagation where the first four statistical moments are used as a comparison. Each method produces very accurate results with the Craig-Bampton reduction having the least accurate results. The models are also compared based on time requirements for the evaluation of each model where the Meta- Model requires the least amount of time for computation by a significant amount. Each of the five models provided accurate results in a reasonable time frame. The determination of which model to use is dependent on the availability of the high-fidelity model and how many evaluations can be performed. Analysis of the output distribution is examined by using a large Monte-Carlo simulation along with a reduced simulation using Latin Hypercube and the stochastic reduced order model sampling technique. Both techniques produced accurate results. The stochastic reduced order modeling technique produced less error when compared to an exhaustive sampling for the majority of methods.
Sensory stimuli reduce the dimensionality of cortical activity
NASA Astrophysics Data System (ADS)
Mazzucato, Luca; Fontanini, Alfredo; La Camera, Giancarlo
Neural ensembles in alert animals generate complex patterns of activity. Although cortical activity unfolds in a space whose dimension is equal to the number of neurons, it is often restricted to a lower dimensional subspace. Dimensionality is the minimal number of dimensions that accurately capture neural dynamics, and may be related to the computational tasks supported by the neural circuit. Here, we investigate the dimensionality of neural ensembles from the insular cortex of alert rats during periods of `ongoing' (spontaneous) and stimulus-evoked activity. We find that the dimensionality grows with ensemble size, and does so significantly faster during ongoing compared to evoked activity. We explain both results using a recurrent spiking network with clustered architecture, and obtain analytical results on the dependence of dimensionality on ensemble size, number of clusters, and pair-wise noise correlations. The theory predicts a characteristic scaling with ensemble size and the existence of an upper bound on dimensionality, which grows with the number of clusters and decreases with the amount of noise correlations. To our knowledge, this is the first mechanistic model of neural dimensionality in cortex during both spontaneous and evoked activity.
Reduced Order Modeling Incompressible Flows
NASA Technical Reports Server (NTRS)
Helenbrook, B. T.
2010-01-01
The details: a) Need stable numerical methods; b) Round off error can be considerable; c) Not convinced modes are correct for incompressible flow. Nonetheless, can derive compact and accurate reduced-order models. Can be used to generate actuator models or full flow-field models
REDMAPS: reduced-dimensionality matching for prostate brachytherapy seed reconstruction.
Lee, Junghoon; Labat, Christian; Jain, Ameet K; Song, Danny Y; Burdette, Everette Clif; Fichtinger, Gabor; Prince, Jerry L
2011-01-01
The success of prostate brachytherapy critically depends on delivering adequate dose to the prostate gland. Intraoperative localization of the implanted seeds provides potential for dose evaluation and optimization during therapy. A reduced-dimensionality matching algorithm for prostate brachytherapy seed reconstruction (REDMAPS) that uses multiple X-ray fluoroscopy images obtained from different poses is proposed. The seed reconstruction problem is formulated as a combinatorial optimization problem, and REDMAPS finds a solution in a clinically acceptable amount of time using dimensionality reduction to create a smaller space of possible solutions. Dimensionality reduction is possible since the optimal solution has approximately zero cost when the poses of the acquired images are known to be within a small error. REDMAPS is also formulated to address the "hidden seed problem" in which seeds overlap on one or more observed images. REDMAPS uses a pruning algorithm to avoid unnecessary computation of cost metrics and the reduced problem is solved using linear programming. REDMAPS was first evaluated and its parameters tuned using simulations. It was then validated using five phantom and 21 patient datasets. REDMAPS was successful in reconstructing the seeds with an overall seed matching rate above 99% and a reconstruction error below 1 mm in less than 5 s. PMID:20643600
Reducing the dimensionality of the protein-folding search problem.
Chellapa, George D; Rose, George D
2012-08-01
How does a folding protein negotiate a vast, featureless conformational landscape and adopt its native structure in biological real time? Motivated by this search problem, we developed a novel algorithm to compare protein structures. Procedures to identify structural analogs are typically conducted in three-dimensional space: the tertiary structure of a target protein is matched against each candidate in a database of structures, and goodness of fit is evaluated by a distance-based measure, such as the root-mean-square distance between target and candidate. This is an expensive approach because three-dimensional space is complex. Here, we transform the problem into a simpler one-dimensional procedure. Specifically, we identify and label the 11 most populated residue basins in a database of high-resolution protein structures. Using this 11-letter alphabet, any protein's three-dimensional structure can be transformed into a one-dimensional string by mapping each residue onto its corresponding basin. Similarity between the resultant basin strings can then be evaluated by conventional sequence-based comparison. The disorder → order folding transition is abridged on both sides. At the onset, folding conditions necessitate formation of hydrogen-bonded scaffold elements on which proteins are assembled, severely restricting the magnitude of accessible conformational space. Near the end, chain topology is established prior to emergence of the close-packed native state. At this latter stage of folding, the chain remains molten, and residues populate natural basins that are approximated by the 11 basins derived here. In essence, our algorithm reduces the protein-folding search problem to mapping the amino acid sequence onto a restricted basin string. PMID:22692765
Reducing the dimensionality of the protein-folding search problem
Chellapa, George D; Rose, George D
2012-01-01
How does a folding protein negotiate a vast, featureless conformational landscape and adopt its native structure in biological real time? Motivated by this search problem, we developed a novel algorithm to compare protein structures. Procedures to identify structural analogs are typically conducted in three-dimensional space: the tertiary structure of a target protein is matched against each candidate in a database of structures, and goodness of fit is evaluated by a distance-based measure, such as the root-mean-square distance between target and candidate. This is an expensive approach because three-dimensional space is complex. Here, we transform the problem into a simpler one-dimensional procedure. Specifically, we identify and label the 11 most populated residue basins in a database of high-resolution protein structures. Using this 11-letter alphabet, any protein's three-dimensional structure can be transformed into a one-dimensional string by mapping each residue onto its corresponding basin. Similarity between the resultant basin strings can then be evaluated by conventional sequence-based comparison. The disorder → order folding transition is abridged on both sides. At the onset, folding conditions necessitate formation of hydrogen-bonded scaffold elements on which proteins are assembled, severely restricting the magnitude of accessible conformational space. Near the end, chain topology is established prior to emergence of the close-packed native state. At this latter stage of folding, the chain remains molten, and residues populate natural basins that are approximated by the 11 basins derived here. In essence, our algorithm reduces the protein-folding search problem to mapping the amino acid sequence onto a restricted basin string. PMID:22692765
Taming EHR data: using semantic similarity to reduce dimensionality.
Kalankesh, Leila; Weatherall, James; Ba-Dhfari, Thamer; Buchan, Iain; Brass, Andy
2013-01-01
Medical care data is a valuable resource that can be used for many purposes including managing and planning for future health needs as well as clinical research. However, the heterogeneity and complexity of medical data can be an obstacle in applying data mining techniques. Much of the potential value of this data therefore goes untapped. In this paper we have developed a methodology that reduces the dimensionality of primary care data, in order to make it more amenable to visualisation, mining and clustering. The methodology involves employing a combination of ontology-based semantic similarity and principal component analysis (PCA) to map the data into an appropriate and informative low dimensional space. Throughout the study, we had access to anonymised patient data from primary care in Salford, UK. The results of our application of this methodology show that diagnosis codes in primary care data can be used to map patients into an informative low dimensional space, which in turn provides the opportunity to support further data exploration and medical hypothesis formulation. PMID:23920514
Reduced-dimensionality-induced helimagnetism in iron nanoislands.
Phark, S-H; Fischer, J A; Corbetta, M; Sander, D; Nakamura, K; Kirschner, J
2014-01-01
Low-dimensionality in magnetic materials often leads to noncollinear magnetic order, such as a helical spin order and skyrmions, which have received much attention because of envisioned applications in spin transport and in future data storage. Up to now, however, the real-space observation of the noncollinear magnetic order has been limited mostly to systems involving a strong spin-orbit interaction. Here we report a noncollinear magnetic order in individual nanostructures of a prototypical magnetic material, bilayer iron islands on Cu (111). Spin-polarized scanning tunnelling microscopy reveals a magnetic stripe phase with a period of 1.28 nm, which is identified as a one-dimensional helical spin order. Ab initio calculations identify reduced-dimensionality-enhanced long-range antiferromagnetic interactions as the driving force of this spin order. Our findings point at the potential of nanostructured magnets as a new experimental arena of noncollinear magnetic order stabilized in a nanostructure, magnetically decoupled from the substrate. PMID:25336303
Sun, Q.; Bowman, J.M. )
1990-01-15
We apply a recently formulated quantum theory of diatom--diatom reactions (Q. Sun and J. M. Bowman, Int. J. Quant. Chem., Quant. Chem. Symp. {bold 23}, 9 (1989)) to a model collinear H{sub 2}+A{sub 2}{r arrow}H+HA{sub 2} reaction, where A has the mass of a hydrogen atom. The theory assumes one diatom bond is nonreactive, and the reactive scattering Hamiltonian is written in terms of hyperspherical and cylindrical coordinates. The potential-energy surface used is the PK2 H+H{sub 2} surface augmented by a harmonic degree of freedom describing the nonreactive A{sub 2}. Details of the formulation and solution of the coupled-channel equations are given, along with convergence tests, and a discussion of the new state-to-state transition probabilities. In particular, the partial quenching of the well-known collinear H+H{sub 2} resonances is noted.
POD/DEIM reduced-order strategies for efficient four dimensional variational data assimilation
Ştefănescu, R.; Sandu, A.; Navon, I.M.
2015-08-15
This work studies reduced order modeling (ROM) approaches to speed up the solution of variational data assimilation problems with large scale nonlinear dynamical models. It is shown that a key requirement for a successful reduced order solution is that reduced order Karush–Kuhn–Tucker conditions accurately represent their full order counterparts. In particular, accurate reduced order approximations are needed for the forward and adjoint dynamical models, as well as for the reduced gradient. New strategies to construct reduced order based are developed for proper orthogonal decomposition (POD) ROM data assimilation using both Galerkin and Petrov–Galerkin projections. For the first time POD, tensorial POD, and discrete empirical interpolation method (DEIM) are employed to develop reduced data assimilation systems for a geophysical flow model, namely, the two dimensional shallow water equations. Numerical experiments confirm the theoretical framework for Galerkin projection. In the case of Petrov–Galerkin projection, stabilization strategies must be considered for the reduced order models. The new reduced order shallow water data assimilation system provides analyses similar to those produced by the full resolution data assimilation system in one tenth of the computational time.
POD/DEIM reduced-order strategies for efficient four dimensional variational data assimilation
NASA Astrophysics Data System (ADS)
Ştefănescu, R.; Sandu, A.; Navon, I. M.
2015-08-01
This work studies reduced order modeling (ROM) approaches to speed up the solution of variational data assimilation problems with large scale nonlinear dynamical models. It is shown that a key requirement for a successful reduced order solution is that reduced order Karush-Kuhn-Tucker conditions accurately represent their full order counterparts. In particular, accurate reduced order approximations are needed for the forward and adjoint dynamical models, as well as for the reduced gradient. New strategies to construct reduced order based are developed for proper orthogonal decomposition (POD) ROM data assimilation using both Galerkin and Petrov-Galerkin projections. For the first time POD, tensorial POD, and discrete empirical interpolation method (DEIM) are employed to develop reduced data assimilation systems for a geophysical flow model, namely, the two dimensional shallow water equations. Numerical experiments confirm the theoretical framework for Galerkin projection. In the case of Petrov-Galerkin projection, stabilization strategies must be considered for the reduced order models. The new reduced order shallow water data assimilation system provides analyses similar to those produced by the full resolution data assimilation system in one tenth of the computational time.
Hybrid reduced order modeling for assembly calculations
Bang, Youngsuk; Abdel-Khalik, Hany S.; Jessee, Matthew A.; Mertyurek, Ugur
2015-08-14
While the accuracy of assembly calculations has greatly improved due to the increase in computer power enabling more refined description of the phase space and use of more sophisticated numerical algorithms, the computational cost continues to increase which limits the full utilization of their effectiveness for routine engineering analysis. Reduced order modeling is a mathematical vehicle that scales down the dimensionality of large-scale numerical problems to enable their repeated executions on small computing environment, often available to end users. This is done by capturing the most dominant underlying relationships between the model's inputs and outputs. Previous works demonstrated the use of the reduced order modeling for a single physics code, such as a radiation transport calculation. This paper extends those works to coupled code systems as currently employed in assembly calculations. Finally, numerical tests are conducted using realistic SCALE assembly models with resonance self-shielding, neutron transport, and nuclides transmutation/depletion models representing the components of the coupled code system.
Hybrid reduced order modeling for assembly calculations
Bang, Y.; Abdel-Khalik, H. S.; Jessee, M. A.; Mertyurek, U.
2013-07-01
While the accuracy of assembly calculations has considerably improved due to the increase in computer power enabling more refined description of the phase space and use of more sophisticated numerical algorithms, the computational cost continues to increase which limits the full utilization of their effectiveness for routine engineering analysis. Reduced order modeling is a mathematical vehicle that scales down the dimensionality of large-scale numerical problems to enable their repeated executions on small computing environment, often available to end users. This is done by capturing the most dominant underlying relationships between the model's inputs and outputs. Previous works demonstrated the use of the reduced order modeling for a single physics code, such as a radiation transport calculation. This manuscript extends those works to coupled code systems as currently employed in assembly calculations. Numerical tests are conducted using realistic SCALE assembly models with resonance self-shielding, neutron transport, and nuclides transmutation/depletion models representing the components of the coupled code system. (authors)
Hybrid reduced order modeling for assembly calculations
Bang, Youngsuk; Abdel-Khalik, Hany S.; Jessee, Matthew A.; Mertyurek, Ugur
2015-08-14
While the accuracy of assembly calculations has greatly improved due to the increase in computer power enabling more refined description of the phase space and use of more sophisticated numerical algorithms, the computational cost continues to increase which limits the full utilization of their effectiveness for routine engineering analysis. Reduced order modeling is a mathematical vehicle that scales down the dimensionality of large-scale numerical problems to enable their repeated executions on small computing environment, often available to end users. This is done by capturing the most dominant underlying relationships between the model's inputs and outputs. Previous works demonstrated the usemore » of the reduced order modeling for a single physics code, such as a radiation transport calculation. This paper extends those works to coupled code systems as currently employed in assembly calculations. Finally, numerical tests are conducted using realistic SCALE assembly models with resonance self-shielding, neutron transport, and nuclides transmutation/depletion models representing the components of the coupled code system.« less
Sparse High Dimensional Models in Economics
Fan, Jianqing; Lv, Jinchi; Qi, Lei
2010-01-01
This paper reviews the literature on sparse high dimensional models and discusses some applications in economics and finance. Recent developments of theory, methods, and implementations in penalized least squares and penalized likelihood methods are highlighted. These variable selection methods are proved to be effective in high dimensional sparse modeling. The limits of dimensionality that regularization methods can handle, the role of penalty functions, and their statistical properties are detailed. Some recent advances in ultra-high dimensional sparse modeling are also briefly discussed. PMID:22022635
Extra-dimensional models on the lattice
Knechtli, Francesco; Rinaldi, Enrico
2016-08-05
In this paper we summarize the ongoing effort to study extra-dimensional gauge theories with lattice simulations. In these models the Higgs field is identified with extra-dimensional components of the gauge field. The Higgs potential is generated by quantum corrections and is protected from divergences by the higher dimensional gauge symmetry. Dimensional reduction to four dimensions can occur through compactification or localization. Gauge-Higgs unification models are often studied using perturbation theory. Numerical lattice simulations are used to go beyond these perturbative expectations and to include nonperturbative effects. We describe the known perturbative predictions and their fate in the strongly-coupled regime formore » various extra-dimensional models.« less
THREE-DIMENSIONAL MODEL FOR HYPERTHERMIA CALCULATIONS
Realistic three-dimensional models that predict temperature distributions with a high degree of spatial resolution in bodies exposed to electromagnetic (EM) fields are required in the application of hyperthermia for cancer treatment. To ascertain the thermophysiologic response of...
Reduced Order Modeling in General Relativity
NASA Astrophysics Data System (ADS)
Tiglio, Manuel
2014-03-01
Reduced Order Modeling is an emerging yet fast developing filed in gravitational wave physics. The main goals are to enable fast modeling and parameter estimation of any detected signal, along with rapid matched filtering detecting. I will focus on the first two. Some accomplishments include being able to replace, with essentially no lost of physical accuracy, the original models with surrogate ones (which are not effective ones, that is, they do not simplify the physics but go on a very different track, exploiting the particulars of the waveform family under consideration and state of the art dimensional reduction techniques) which are very fast to evaluate. For example, for EOB models they are at least around 3 orders of magnitude faster than solving the original equations, with physically equivalent results. For numerical simulations the speedup is at least 11 orders of magnitude. For parameter estimation our current numbers are about bringing ~100 days for a single SPA inspiral binary neutron star Bayesian parameter estimation analysis to under a day. More recently, it has been shown that the full precessing problem for, say, 200 cycles, can be represented, through some new ideas, by a remarkably compact set of carefully chosen reduced basis waveforms (~10-100, depending on the accuracy requirements). I will highlight what I personally believe are the challenges to face next in this subarea of GW physics and where efforts should be directed. This talk will summarize work in collaboration with: Harbir Antil (GMU), Jonathan Blackman (Caltech), Priscila Canizares (IoA, Cambridge, UK), Sarah Caudill (UWM), Jonathan Gair (IoA. Cambridge. UK), Scott Field (UMD), Chad R. Galley (Caltech), Frank Herrmann (Germany), Han Hestahven (EPFL, Switzerland), Jason Kaye (Brown, Stanford & Courant). Evan Ochsner (UWM), Ricardo Nochetto (UMD), Vivien Raymond (LIGO, Caltech), Rory Smith (LIGO, Caltech) Bela Ssilagyi (Caltech) and MT (UMD & Caltech).
Reduced-Order Modeling: New Approaches for Computational Physics
NASA Technical Reports Server (NTRS)
Beran, Philip S.; Silva, Walter A.
2001-01-01
In this paper, we review the development of new reduced-order modeling techniques and discuss their applicability to various problems in computational physics. Emphasis is given to methods ba'sed on Volterra series representations and the proper orthogonal decomposition. Results are reported for different nonlinear systems to provide clear examples of the construction and use of reduced-order models, particularly in the multi-disciplinary field of computational aeroelasticity. Unsteady aerodynamic and aeroelastic behaviors of two- dimensional and three-dimensional geometries are described. Large increases in computational efficiency are obtained through the use of reduced-order models, thereby justifying the initial computational expense of constructing these models and inotivatim,- their use for multi-disciplinary design analysis.
[Dimensional modeling analysis for outpatient payments].
Guo, Yi-zhong; Guo, Yi-min
2008-09-01
This paper introduces a data warehouse model for outpatient payments, which is designed according to the requirements of the hospital financial management while dimensional modeling technique is combined with the analysis on the requirements. This data warehouse model can not only improve the accuracy of financial management requirements, but also greatly increase the efficiency and quality of the hospital management. PMID:19119657
Finding four dimensional symplectic maps with reduced chaos: Preliminary results
Weishi Wan; Cary, J.R.; Shasharina, S.G.
1998-06-01
A method for finding integrable four-dimensional symplectic maps is outlined. The method relies on solving for parameter values at which the linear stability factors of the fixed points of the map have the values corresponding to integrability. This method is applied to accelerator lattices in order to increase dynamic aperture. Results show a increase of the dynamic aperture after correction, which implies the validity of the method.
3-Dimensional Topographic Models for the Classroom
NASA Technical Reports Server (NTRS)
Keller, J. W.; Roark, J. H.; Sakimoto, S. E. H.; Stockman, S.; Frey, H. V.
2003-01-01
We have recently undertaken a program to develop educational tools using 3-dimensional solid models of digital elevation data acquired by the Mars Orbital Laser Altimeter (MOLA) for Mars as well as a variety of sources for elevation data of the Earth. This work is made possible by the use of rapid prototyping technology to construct solid 3-Dimensional models of science data. We recently acquired rapid prototyping machine that builds 3-dimensional models in extruded plastic. While the machine was acquired to assist in the design and development of scientific instruments and hardware, it is also fully capable of producing models of spacecraft remote sensing data. We have demonstrated this by using Mars Orbiter Laser Altimeter (MOLA) topographic data and Earth based topographic data to produce extruded plastic topographic models which are visually appealing and instantly engage those who handle them.
Reduced Model for Detonation Wave
NASA Astrophysics Data System (ADS)
Maillet, Jean-Bernard; Soulard, Laurent; Stoltz, Gabriel
2007-06-01
We present a mesoscopic model for reactive waves which extends the model proposed by G. Stoltz (G. Stoltz, Europhys. Lett. 76 (2006) 849). A complex molecule (or a group of molecules) is replaced by a single mesoparticle, evolving according to some Dissipative Particle Dynamics. Chemical reactions can be handled in a mean way by considering an additional variable per particle describing a rate of reaction. The evolution of this rate is governed by the kinetics of a reversible exothermic reaction. Numerical results show that the reactive wave behaves like a detonation wave.
Reduced fidelity in the Kitaev honeycomb model
Wang, Zhi; Ma, Tianxing; Gu, Shi-Jian; Lin, Hai-Qing
2010-06-15
We study reduced fidelity and reduced fidelity susceptibility in the Kitaev honeycomb model. It is shown that the nearest-two-site reduced fidelity susceptibility manifests itself as a peak at the quantum phase transition point, although the one-site reduced fidelity susceptibility vanishes. Our results directly reveal that the reduced fidelity susceptibility can be used to characterize the quantum phase transition in the Kitaev honeycomb model, which suggests that, despite its local nature, the reduced fidelity susceptibility is an accurate marker of the topological phase transition when it is properly chosen.
One-dimensional XY model: Ergodic properties and hydrodynamic limit
NASA Astrophysics Data System (ADS)
Shuhov, A. G.; Suhov, Yu. M.
1986-11-01
We prove theorems on convergence to a stationary state in the course of time for the one-dimensional XY model and its generalizations. The key point is the well-known Jordan-Wigner transformation, which maps the XY dynamics onto a group of Bogoliubov transformations on the CAR C *-algebra over Z 1. The role of stationary states for Bogoliubov transformations is played by quasifree states and for the XY model by their inverse images with respect to the Jordan-Wigner transformation. The hydrodynamic limit for the one-dimensional XY model is also considered. By using the Jordan-Wigner transformation one reduces the problem to that of constructing the hydrodynamic limit for the group of Bogoliubov transformations. As a result, we obtain an independent motion of "normal modes," which is described by a hyperbolic linear differential equation of second order. For the XX model this equation reduces to a first-order transfer equation.
Response characteristics of a low-dimensional model neuron.
Cartling, B
1996-11-15
It is shown that a low-dimensional model neuron with a response time constant smaller than the membrane time constant closely reproduces the activity and excitability behavior of a detailed conductance-based model of Hodgkin-Huxley type. The fast response of the activity variable also makes it possible to reduce the model to a one-dimensional model, in particular for typical conditions. As an example, the reduction to a single-variable model from a multivariable conductance-based model of a neocortical pyramidal cell with somatic input is demonstrated. The conditions for avoiding a spurious damped oscillatory response to a constant input are derived, and it is shown that a limit-cycle response cannot occur. The capability of the low-dimensional model to approximate higher-dimensional models accurately makes it useful for describing complex dynamics of nets of interconnected neurons. The simplicity of the model facilitates analytic studies, elucidations of neurocomputational mechanisms, and applications to large-scale systems. PMID:8888611
Two-dimensional charge-control model for MODFET's
NASA Astrophysics Data System (ADS)
Kim, Young Min; Roblin, Patrick
1986-11-01
A dc model for MODFET's accounting for two-dimensional effects is proposed. In this model, charge control is realized by solving the two-dimensional Poisson equation in the depleted AlGaAs region. The transport picture used for the two-dimensional electron gas (2-DEG) in the AlGaAs/GaAs heterojunction relies on the quasi-Fermi level together with a field-dependent mobility and therefore includes 2-DEG diffusion effects. The approach reduces the analysis to a single integral equation. I-V curves, which provide a good fitting to the reported experimental data, are obtained using a smooth velocity-field curve. The channel voltage, 2-DEG concentration, parallel electric-field, and drift velocity along the channel are given in this study and provide a clear picture of current saturation. The model is consistent with the approximate two-region saturation picture but provides a smoother transition.
Rank-Based Similarity Search: Reducing the Dimensional Dependence.
Houle, Michael E; Nett, Michael
2015-01-01
This paper introduces a data structure for k-NN search, the Rank Cover Tree (RCT), whose pruning tests rely solely on the comparison of similarity values; other properties of the underlying space, such as the triangle inequality, are not employed. Objects are selected according to their ranks with respect to the query object, allowing much tighter control on the overall execution costs. A formal theoretical analysis shows that with very high probability, the RCT returns a correct query result in time that depends very competitively on a measure of the intrinsic dimensionality of the data set. The experimental results for the RCT show that non-metric pruning strategies for similarity search can be practical even when the representational dimension of the data is extremely high. They also show that the RCT is capable of meeting or exceeding the level of performance of state-of-the-art methods that make use of metric pruning or other selection tests involving numerical constraints on distance values. PMID:26353214
Escherichia coli growth under modeled reduced gravity
NASA Technical Reports Server (NTRS)
Baker, Paul W.; Meyer, Michelle L.; Leff, Laura G.
2004-01-01
Bacteria exhibit varying responses to modeled reduced gravity that can be simulated by clino-rotation. When Escherichia coli was subjected to different rotation speeds during clino-rotation, significant differences between modeled reduced gravity and normal gravity controls were observed only at higher speeds (30-50 rpm). There was no apparent affect of removing samples on the results obtained. When E. coli was grown in minimal medium (at 40 rpm), cell size was not affected by modeled reduced gravity and there were few differences in cell numbers. However, in higher nutrient conditions (i.e., dilute nutrient broth), total cell numbers were higher and cells were smaller under reduced gravity compared to normal gravity controls. Overall, the responses to modeled reduced gravity varied with nutrient conditions; larger surface to volume ratios may help compensate for the zone of nutrient depletion around the cells under modeled reduced gravity.
Pattern recognition in volcano seismology - Reducing spectral dimensionality
NASA Astrophysics Data System (ADS)
Unglert, K.; Radic, V.; Jellinek, M.
2015-12-01
Variations in the spectral content of volcano seismicity can relate to changes in volcanic activity. Low-frequency seismic signals often precede or accompany volcanic eruptions. However, they are commonly manually identified in spectra or spectrograms, and their definition in spectral space differs from one volcanic setting to the next. Increasingly long time series of monitoring data at volcano observatories require automated tools to facilitate rapid processing and aid with pattern identification related to impending eruptions. Furthermore, knowledge transfer between volcanic settings is difficult if the methods to identify and analyze the characteristics of seismic signals differ. To address these challenges we evaluate whether a machine learning technique called Self-Organizing Maps (SOMs) can be used to characterize the dominant spectral components of volcano seismicity without the need for any a priori knowledge of different signal classes. This could reduce the dimensions of the spectral space typically analyzed by orders of magnitude, and enable rapid processing and visualization. Preliminary results suggest that the temporal evolution of volcano seismicity at Kilauea Volcano, Hawai`i, can be reduced to as few as 2 spectral components by using a combination of SOMs and cluster analysis. We will further refine our methodology with several datasets from Hawai`i and Alaska, among others, and compare it to other techniques.
Local properties of the two-dimensional Hubbard model
NASA Astrophysics Data System (ADS)
Drewes, Jan; Miller, Luke; Cocchi, Eugenio; Chan, Chun Fai; Pertot, Daniel; Brennecke, Ferdinand; Köhl, Michael
2016-05-01
Quantum gases of interacting fermionic atoms in optical lattices promise to shed new light on the low-temperature phases of the Hubbard model such as spin-ordered phases, or in particular, on possible d-wave superconductivity. In this context it remains challenging to further reduce the temperature of the trapped gas. We experimentally realize the two-dimensional Hubbard model by loading a quantum degenerate Fermi gas of 40K atoms into a three-dimensional optical lattice geometry. By tuning the interaction between the two lowest hyperfine states to strong repulsion the two-dimensional Mott-insulator is created. High resolution absorption imaging in combination with radio-frequency spectroscopy is applied to spatially resolve the atomic distribution in a single layer in the vertical direction. This measurement scheme gives direct access to the local properties of the trapped gas and we present most recent data on the distribution of entropy and density-density fluctuations.
Science and technology of reduced-dimensional magnetic materials
Heffner, R.H.; Bishop, A.R.; Hundley, M.F.; Jia, Q.; Neumeier, J.J.; Trugman, S.A.; Thompson, J.D.; Wu, X.D.; Zhang, J.
1998-12-31
This is the final report of a three-year, Laboratory Directed Research and Development (LDRD) project at Los Alamos National Laboratory (LANL). This work involved the synthesis of single crystal and thin film samples of magnetoresistive manganites (LaMnO{sub 3} doped with Ca and Sr) and the characterization of their electronic transport properties to understand the underlying physical mechanisms responsible for the colossal magnetoresistance (CMR) of these materials. The experimental program was supplemented by a modeling effort that sought to develop microscopic mathematical models of the observed phenomena. The authors succeeded in finding an important relation between the magnetization and resistivity in these materials, which helps to explain the importance of lattice distortions accompanied by clusters of ferromagnetic spins (called spin-lattice polarons) in the CMR phenomena. In addition, they developed rudimentary tunnel junctions of CMR-insulator-CMR multilayers that will lead to possible applications of these materials as magnetic sensors.
Anisotropic 2-dimensional Robin Hood model
NASA Astrophysics Data System (ADS)
Buldyrev, Sergey; Cwilich, Gabriel; Zypman, Fredy
2009-03-01
We have considered the Robin Hood model introduced by Zaitsev[1] to discuss flux creep and depinning of interfaces in a two dimensional system. Although the model has been studied extensively analytically in 1-d [2], its scaling laws have been verified numerically only in that case. Recent work suggest that its properties might be important to understand surface friction[3], where its 2-dimensional properties are important. We show that in the 2-dimensional case scaling laws can be found provided one considers carefully the anisotropy of the model, and different ways of introducing that anisotropy lead to different exponents and scaling laws, in analogy with directed percolation, with which this model is closely related[4]. We show that breaking the rotational symmetry between the x and y axes does not change the scaling properties of the model, but the introduction of a preferential direction of accretion (``robbing'' in the language of the model) leads to new scaling exponents. [1] S.I.Zaitsev, Physica A189, 411 (1992) [2] M. Pacuzki, S. Maslov and P.Bak, Phys Rev. E53, 414 (1996) [3] S. Buldyrev, J. Ferrante and F. Zypman Phys. Rev E64, 066110 (2006) [4] G. Odor, Rev. Mod. Phys. 76, 663 (2004) .
Two dimensional thick center vortex model
NASA Astrophysics Data System (ADS)
Rafibakhsh, Shahnoosh; Ahmadi, Alireza
2016-01-01
The potential between static color source is calculated in the SU (3) gauge group by introducing a two dimensional vortex flux. To generalize the model, the length of the Wilson loop is equal to R oriented along the x axis, and the vortex flux is considered as a function of x and y. The comparison between the generalized model and the original one shows that the intermediate linear regime is increased significantly and better agreement with Casimir scaling is achieved. Furthermore, the model is applied to calculate the potential between baryons.
Three-dimensional modeling of ovarian cancer
Erin, White; Hilary, Kenny; Ernst, Lengyel
2015-01-01
New models for epithelial ovarian cancer initiation and metastasis are required to obtain a mechanistic understanding of the disease and to develop new therapeutics. Modeling ovarian cancer however is challenging as a result of the genetic heterogeneity of the malignancy, the diverse pathology, the limited availability of human tissue for research, the atypical mechanisms of metastasis, and because the origin is unclear. Insights into the origin of high-grade serous ovarian carcinomas and mechanisms of metastasis have resulted in the generation of novel three-dimensional (3D) culture models that better approximate the behavior of the tumor cells in vivo than prior two-dimensional models. The 3D models aim to recapitulate the tumor microenvironment, which has a critical role in the pathogenesis of ovarian cancer. Ultimately, findings using models that accurately reflect human ovarian cancer biology are likely to translate into improved clinical outcomes. In this review we discuss the design of new 3D culture models of ovarian cancer primarily using human cells, key studies in which these models have been applied, current limitations, and future applications. PMID:25034878
Semi-Empirical Modeling of Two-Dimensional and Three-Dimensional Dynamic Stall
NASA Astrophysics Data System (ADS)
Modarres, Ramin
Helicopters are generally limited in their performance by the phenomenon of dynamic stall. The purpose of this work is to develop a method for modeling dynamic stall that is appropriate to preliminary design and flight simulator applications. Unlike other semi-empirical dynamic stall models, the model developed in this thesis, not only counts for the well-known, three-dimensional flow effects on the stalled loads but also captures the secondary vortex-shedding phenomenon that has been seen in experiments. The fundamental physics that modify dynamic-stall behavior and that have been extended from two-dimensional to three-dimensional flow are, namely: 1.) yawed flow, 2.) time-varying velocity, 3.) the rotational environment and 4.) the radial blade coupling. For the reduced-order modeling, extra nonlinear states have been added to the dynamic stall model in order to simulate the double-dynamic-stall phenomenon. The results of this study will have practical applications to aerospace systems, such as compliant or morphing surfaces in rotary-wing systems that encounter transient or periodic separation and reattachment during phenomena such as dynamic stall.
Finite-dimensional models of diffusion chaos
NASA Astrophysics Data System (ADS)
Glyzin, S. D.; Kolesov, A. Yu.; Rozov, N. Kh.
2010-05-01
Some parabolic systems of the reaction-diffusion type exhibit the phenomenon of diffusion chaos. Specifically, when the diffusivities decrease proportionally, while the other parameters of a system remain fixed, the system exhibits a chaotic attractor whose dimension increases indefinitely. Various finite-dimensional models of diffusion chaos are considered that represent chains of coupled ordinary differential equations and similar chains of discrete mappings. A numerical analysis suggests that these chains with suitably chosen parameters exhibit chaotic attractors of arbitrarily high dimensions.
Verified reduction of dimensionality for an all-vanadium redox flow battery model
NASA Astrophysics Data System (ADS)
Sharma, A. K.; Ling, C. Y.; Birgersson, E.; Vynnycky, M.; Han, M.
2015-04-01
The computational cost for all-vanadium redox flow batteries (VRFB) models that seek to capture the transport phenomena usually increases with the number of spatial dimensions considered. In this context, we carry out scale analysis to derive a reduced zero-dimensional model. Two nondimensional numbers and their limits to support the model reduction are identified. We verify the reduced model by comparing its charge-discharge curve predictions with that of a full two-dimensional model. The proposed analysis leading to reduction in dimensionality is generic and can be employed for other types of redox flow batteries.
Wave turbulence in one-dimensional models
NASA Astrophysics Data System (ADS)
Zakharov, V. E.; Guyenne, P.; Pushkarev, A. N.; Dias, F.
2001-05-01
A two-parameter nonlinear dispersive wave equation proposed by Majda, McLaughlin and Tabak is studied analytically and numerically as a model for the study of wave turbulence in one-dimensional systems. Our ultimate goal is to test the validity of weak turbulence theory. Although weak turbulence theory is independent on the sign of the nonlinearity of the model, the numerical results show a strong dependence on the sign of the nonlinearity. A possible explanation for this discrepancy is the strong influence of coherent structures - wave collapses and quasisolitons - in wave turbulence.
Structural Modelling of Two Dimensional Amorphous Materials
NASA Astrophysics Data System (ADS)
Kumar, Avishek
The continuous random network (CRN) model of network glasses is widely accepted as a model for materials such as vitreous silica and amorphous silicon. Although it has been more than eighty years since the proposal of the CRN, there has not been conclusive experimental evidence of the structure of glasses and amorphous materials. This has now changed with the advent of two-dimensional amorphous materials. Now, not only the distribution of rings but the actual atomic ring structure can be imaged in real space, allowing for greater charicterization of these types of networks. This dissertation reports the first work done on the modelling of amorphous graphene and vitreous silica bilayers. Models of amorphous graphene have been created using a Monte Carlo bond-switching method and MD method. Vitreous silica bilayers have been constructed using models of amorphous graphene and the ring statistics of silica bilayers has been studied.
Modelling of Three-Dimensional Nanographene.
Mathioudakis, Christos; Kelires, Pantelis C
2016-12-01
Monte Carlo simulations and tight-binding calculations shed light on the properties of three-dimensional nanographene, a material composed of interlinked, covalently-bonded nanoplatelet graphene units. By constructing realistic model networks of nanographene, we study its structure, mechanical stability, and optoelectronic properties. We find that the material is nanoporous with high specific surface area, in agreement with experimental reports. Its structure is characterized by randomly oriented and curved nanoplatelet units which retain a high degree of graphene order. The material exhibits good mechanical stability with a formation energy of only ∼0.3 eV/atom compared to two-dimensional graphene. It has high electrical conductivity and optical absorption, with values approaching those of graphene. PMID:26983431
Three-dimensional pancreas organogenesis models.
Grapin-Botton, A
2016-09-01
A rediscovery of three-dimensional culture has led to the development of organ biogenesis, homeostasis and disease models applicable to human tissues. The so-called organoids that have recently flourished serve as valuable models bridging between cell lines or primary cells grown on the bottom of culture plates and experiments performed in vivo. Though not recapitulating all aspects of organ physiology, the miniature organs generated in a dish are useful models emerging for the pancreas, starting from embryonic progenitors, adult cells, tumour cells and stem cells. This review focusses on the currently available systems and their relevance to the study of the pancreas, of β-cells and of several pancreatic diseases including diabetes. We discuss the expected future developments for studying human pancreas development and function, for developing diabetes models and for producing therapeutic cells. PMID:27615129
Reducing the invasiveness of modelling frameworks
NASA Astrophysics Data System (ADS)
Donchyts, G.; Baart, F.
2010-12-01
There are several modelling frameworks available that allow for environmental models to exchange data with other models. Many efforts have been made in the past years promoting solutions aimed at integrating different numerical models with each other as well as at simplifying the way to set them up, entering the data, and running them. Meanwhile the development of many modeling frameworks concentrated on the interoperability of different model engines, several standards were introduced such as ESMF, OMS and OpenMI. One of the issues with applying modelling frameworks is the invasessness, the more the model has to know about the framework, the more intrussive it is. Another issue when applying modelling frameworks are that a lot of environmental models are written in procedural and in FORTRAN, which is one of the few languages that doesn't have a proper interface with other programming languages. Most modelling frameworks are written in object oriented languages like java/c# and the modelling framework in FORTRAN ESMF is also objected oriented. In this research we show how the application of domain driven, object oriented development techniques to environmental models can reduce the invasiveness of modelling frameworks. Our approach is based on four different steps: 1) application of OO techniques and reflection to the existing model to allow introspection. 2) programming language interoperability, between model written in a procedural programming language and modeling framework written in an object oriented programming language. 3) Domain mapping between data types used by model and other components being integrated 4) Connecting models using framework (wrapper) We compare coupling of an existing model as it was to the same model adapted using the four step approach. We connect both versions of the models using two different integrated modelling frameworks. As an example of a model we use the coastal morphological model XBeach. By adapting this model it allows for
A three-dimensional asymmetric magnetopause model
NASA Astrophysics Data System (ADS)
Lin, R. L.; Zhang, X. X.; Liu, S. Q.; Wang, Y. L.; Gong, J. C.
2010-04-01
A new three-dimensional asymmetric magnetopause model has been developed for corrected GSM coordinates and parameterized by the solar wind dynamic and magnetic pressures (Pd + Pm), the interplanetary magnetic field (IMF) Bz, and the dipole tilt angle. On the basis of the magnetopause crossings from Geotail, IMP 8, Interball, TC1, Time History of Events and Macroscale Interactions during Substorms (THEMIS), Wind, Cluster, Polar, Los Alamos National Laboratory (LANL), GOES, and Hawkeye, and the corresponding upstream solar wind parameters from ACE, Wind, or OMNI, this model is constructed by the Levenberg-Marquardt method for nonlinear multiparameter fitting step-by-step over the divided regions. The asymmetries of the magnetopause and the indentations near the cusps are appropriately described in this new model. In addition, the saturation effect of IMF Bz on the subsolar distance and the extrapolation for the distant tail magnetopause are also considered. On the basis of this model, the power law index for the subsolar distance versus Pd + Pm is a bit less than -1/6, the northward IMF Bz almost does not influence the magnetopause, and the dipole tilt angle is very important to the north-south asymmetry and the location of indentations. In comparison with the previous empirical magnetopause models based on our database, the new model improves prediction capability to describe the three-dimensional structure of the magnetopause. It is shown that this new model can be used to quantitatively study how Pd + Pm compresses the magnetopause, how the southward IMF Bz erodes the magnetopause, and how the dipole tilt angle influences the north-south asymmetry and the indentations.
Low dimensional modeling of wall turbulence
NASA Astrophysics Data System (ADS)
Aubry, Nadine
2015-11-01
In this talk we will review the original low dimensional dynamical model of the wall region of a turbulent boundary layer [Aubry, Holmes, Lumley and Stone, Journal of Fluid Dynamics 192, 1988] and discuss its impact on the field of fluid dynamics. We will also invite a few researchers who would like to make brief comments on the influence Lumley had on their research paths. In collaboration with Philip Holmes, Program in Applied and Computational Mathematics and Department of Mechanical and Aerospace Engineering, Princeton University, Princeton, NJ.
Three-dimensional ring current decay model
NASA Astrophysics Data System (ADS)
Fok, Mei Ching; Moore, Thomas E.; Kozyra, Janet U.; Ho, George C.; Hamilton, Douglas C.
1995-06-01
This work is an extension of a previous ring current decay model. In the previous work, a two-dimensional kinetic model was constructed to study the temporal variations of the equatorially mirroring ring current ions, considering charge exchange and Coulomb drag losses along drift paths in a magnetic dipole field. In this work, particles with arbitrary pitch angle are considered. By bounce averaging the kinetic equation of the phase space density, information along magnetic field lines can be inferred from the equator. The three-dimensional model is used to simulate the recovery phase of a model great magnetic storm, similar to that which occurred in early February 1986. The initial distribution of ring current ions (at the minimum Dst) is extrapolated to all local times from AMPTE/CCE spacecraft observations on the dawnside and duskside of the inner magnetosphere spanning the L value range L=2.25 to 6.75. Observations by AMPTE/CCE of ring current distributions over subsequent orbits during the storm recovery phase are compared to model outputs. In general, the calculated ion fluxes are consistent with observations, except for H+ fluxes at tens of keV, which are always overestimated. A newly invented visualization idea, designated as a chromogram, is used to display the spatial and energy dependence of the ring current ion diifferential flux. Important features of storm time ring current, such as day-night asymmetry during injection and drift hole on the dayside at low energies (<10 keV), are manifested in the chromogram representation. The pitch angle distribution is well fit by the function, j0(1+Ayn), where y is sine of the equatorial pitch angle. The evolution of the index n is a combined effect of charge exchange loss and particle drift. At low energies (<30 keV), both drift dispersion and charge exchange are important in determining n. ©American Geophysical 1995
Three-dimensional ring current decay model
NASA Technical Reports Server (NTRS)
Fok, Mei-Ching; Moore, Thomas E.; Kozyra, Janet U.; Ho, George C.; Hamilton, Douglas C.
1995-01-01
This work is an extension of a previous ring current decay model. In the previous work, a two-dimensional kinetic model was constructed to study the temporal variations of the equatorially mirroring ring current ions, considering charge exchange and Coulomb drag losses along drift paths in a magnetic dipole field. In this work, particles with arbitrary pitch angle are considered. By bounce averaging the kinetic equation of the phase space density, information along magnetic field lines can be inferred from the equator. The three-dimensional model is used to simulate the recovery phase of a model great magnetic storm, similar to that which occurred in early February 1986. The initial distribution of ring current ions (at the minimum Dst) is extrapolated to all local times from AMPTE/CCE spacecraft observations on the dawnside and duskside of the inner magnetosphere spanning the L value range L = 2.25 to 6.75. Observations by AMPTE/CCE of ring current distributions over subsequent orbits during the storm recovery phase are compared to model outputs. In general, the calculated ion fluxes are consistent with observations, except for H(+) fluxes at tens of keV, which are always overestimated. A newly invented visualization idea, designated as a chromogram, is used to display the spatial and energy dependence of the ring current ion differential flux. Important features of storm time ring current, such as day-night asymmetry during injection and drift hole on the dayside at low energies (less than 10 keV), are manifested in the chromogram representation. The pitch angle distribution is well fit by the function, J(sub o)(1 + Ay(sup n)), where y is sine of the equatorial pitch angle. The evolution of the index n is a combined effect of charge exchange loss and particle drift. At low energies (less than 30 keV), both drift dispersion and charge exchange are important in determining n.
Vlasov multi-dimensional model dispersion relation
Lushnikov, Pavel M.; Rose, Harvey A.; Silantyev, Denis A.; Vladimirova, Natalia
2014-07-15
A hybrid model of the Vlasov equation in multiple spatial dimension D > 1 [H. A. Rose and W. Daughton, Phys. Plasmas 18, 122109 (2011)], the Vlasov multi dimensional model (VMD), consists of standard Vlasov dynamics along a preferred direction, the z direction, and N flows. At each z, these flows are in the plane perpendicular to the z axis. They satisfy Eulerian-type hydrodynamics with coupling by self-consistent electric and magnetic fields. Every solution of the VMD is an exact solution of the original Vlasov equation. We show approximate convergence of the VMD Langmuir wave dispersion relation in thermal plasma to that of Vlasov-Landau as N increases. Departure from strict rotational invariance about the z axis for small perpendicular wavenumber Langmuir fluctuations in 3D goes to zero like θ{sup N}, where θ is the polar angle and flows are arranged uniformly over the azimuthal angle.
High dimensional decision dilemmas in climate models
NASA Astrophysics Data System (ADS)
Bracco, A.; Neelin, J. D.; Luo, H.; McWilliams, J. C.; Meyerson, J. E.
2013-05-01
An important source of uncertainty in climate models is linked to the calibration of model parameters. Interest in systematic and automated parameter optimization procedures stems from the desire to improve the model climatology and to quantify the average sensitivity associated with potential changes in the climate system. Neelin et al. (2010) used a quadratic metamodel to objectively calibrate an atmospheric circulation model (AGCM) around four adjustable parameters. The metamodel accurately estimates global spatial averages of common fields of climatic interest, from precipitation, to low and high level winds, from temperature at various levels to sea level pressure and geopotential height, while providing a computationally cheap strategy to explore the influence of parameter settings. Here, guided by the metamodel, the ambiguities or dilemmas related to the decision making process in relation to model sensitivity and optimization are examined. Simulations of current climate are subject to considerable regional-scale biases. Those biases may vary substantially depending on the climate variable considered, and/or on the performance metric adopted. Common dilemmas are associated with model revisions yielding improvement in one field or regional pattern or season, but degradation in another, or improvement in the model climatology but degradation in the interannual variability representation. Challenges are posed to the modeler by the high dimensionality of the model output fields and by the large number of adjustable parameters. The use of the metamodel in the optimization strategy helps visualize trade-offs at a regional level, e.g. how mismatches between sensitivity and error spatial fields yield regional errors under minimization of global objective functions.
High dimensional decision dilemmas in climate models
NASA Astrophysics Data System (ADS)
Bracco, A.; Neelin, J. D.; Luo, H.; McWilliams, J. C.; Meyerson, J. E.
2013-10-01
An important source of uncertainty in climate models is linked to the calibration of model parameters. Interest in systematic and automated parameter optimization procedures stems from the desire to improve the model climatology and to quantify the average sensitivity associated with potential changes in the climate system. Building upon on the smoothness of the response of an atmospheric circulation model (AGCM) to changes of four adjustable parameters, Neelin et al. (2010) used a quadratic metamodel to objectively calibrate the AGCM. The metamodel accurately estimates global spatial averages of common fields of climatic interest, from precipitation, to low and high level winds, from temperature at various levels to sea level pressure and geopotential height, while providing a computationally cheap strategy to explore the influence of parameter settings. Here, guided by the metamodel, the ambiguities or dilemmas related to the decision making process in relation to model sensitivity and optimization are examined. Simulations of current climate are subject to considerable regional-scale biases. Those biases may vary substantially depending on the climate variable considered, and/or on the performance metric adopted. Common dilemmas are associated with model revisions yielding improvement in one field or regional pattern or season, but degradation in another, or improvement in the model climatology but degradation in the interannual variability representation. Challenges are posed to the modeler by the high dimensionality of the model output fields and by the large number of adjustable parameters. The use of the metamodel in the optimization strategy helps visualize trade-offs at a regional level, e.g., how mismatches between sensitivity and error spatial fields yield regional errors under minimization of global objective functions.
Incorporating 3-dimensional models in online articles
Cevidanes, Lucia H. S.; Ruellasa, Antonio C. O.; Jomier, Julien; Nguyen, Tung; Pieper, Steve; Budin, Francois; Styner, Martin; Paniagua, Beatriz
2015-01-01
Introduction The aims of this article were to introduce the capability to view and interact with 3-dimensional (3D) surface models in online publications, and to describe how to prepare surface models for such online 3D visualizations. Methods Three-dimensional image analysis methods include image acquisition, construction of surface models, registration in a common coordinate system, visualization of overlays, and quantification of changes. Cone-beam computed tomography scans were acquired as volumetric images that can be visualized as 3D projected images or used to construct polygonal meshes or surfaces of specific anatomic structures of interest. The anatomic structures of interest in the scans can be labeled with color (3D volumetric label maps), and then the scans are registered in a common coordinate system using a target region as the reference. The registered 3D volumetric label maps can be saved in .obj, .ply, .stl, or .vtk file formats and used for overlays, quantification of differences in each of the 3 planes of space, or color-coded graphic displays of 3D surface distances. Results All registered 3D surface models in this study were saved in .vtk file format and loaded in the Elsevier 3D viewer. In this study, we describe possible ways to visualize the surface models constructed from cone-beam computed tomography images using 2D and 3D figures. The 3D surface models are available in the article’s online version for viewing and downloading using the reader’s software of choice. These 3D graphic displays are represented in the print version as 2D snapshots. Overlays and color-coded distance maps can be displayed using the reader’s software of choice, allowing graphic assessment of the location and direction of changes or morphologic differences relative to the structure of reference. The interpretation of 3D overlays and quantitative color-coded maps requires basic knowledge of 3D image analysis. Conclusions When submitting manuscripts, authors can
A three-dimensional human walking model
NASA Astrophysics Data System (ADS)
Yang, Q. S.; Qin, J. W.; Law, S. S.
2015-11-01
A three-dimensional human bipedal walking model with compliant legs is presented in this paper. The legs are modeled with time-variant dampers, and the model is able to characterize the gait pattern of an individual using a minimal set of parameters. Feedback control, for both the forward and lateral movements, is implemented to regulate the walking performance of the pedestrian. The model provides an improvement over classic invert pendulum models. Numerical studies were undertaken to investigate the effects of leg stiffness and attack angle. Simulation results show that when walking at a given speed, increasing the leg stiffness with a constant attack angle results in a longer step length, a higher step frequency, a faster walking speed and an increase in both the peak vertical and lateral ground reaction forces. Increasing the attack angle with a constant leg stiffness results in a higher step frequency, a decrease in the step length, an increase in the total energy of the system and a decrease in both the peak vertical and lateral ground reaction forces.
A Regression Algorithm for Model Reduction of Large-Scale Multi-Dimensional Problems
NASA Astrophysics Data System (ADS)
Rasekh, Ehsan
2011-11-01
Model reduction is an approach for fast and cost-efficient modelling of large-scale systems governed by Ordinary Differential Equations (ODEs). Multi-dimensional model reduction has been suggested for reduction of the linear systems simultaneously with respect to frequency and any other parameter of interest. Multi-dimensional model reduction is also used to reduce the weakly nonlinear systems based on Volterra theory. Multiple dimensions degrade the efficiency of reduction by increasing the size of the projection matrix. In this paper a new methodology is proposed to efficiently build the reduced model based on regression analysis. A numerical example confirms the validity of the proposed regression algorithm for model reduction.
Two-Dimensional Computational Model for Wave Rotor Flow Dynamics
NASA Technical Reports Server (NTRS)
Welch, Gerard E.
1996-01-01
A two-dimensional (theta,z) Navier-Stokes solver for multi-port wave rotor flow simulation is described. The finite-volume form of the unsteady thin-layer Navier-Stokes equations are integrated in time on multi-block grids that represent the stationary inlet and outlet ports and the moving rotor passages of the wave rotor. Computed results are compared with three-port wave rotor experimental data. The model is applied to predict the performance of a planned four-port wave rotor experiment. Two-dimensional flow features that reduce machine performance and influence rotor blade and duct wall thermal loads are identified. The performance impact of rounding the inlet port wall, to inhibit separation during passage gradual opening, is assessed.
Three-dimensional model of lignin structure
Jurasek, L.
1995-12-01
An attempt to build a three-dimensional model of lignin structure using a computer program is described. The program simulates the biosynthesis of spruce lignin by allowing coniferyl alcohol subunits to be added randomly by six different types of linkages, assumed to be most common. The simulated biosynthesis starts from a number of seed points within restricted space, corresponding to 50 mM initial concentration of coniferyl alcohol. Rules of three-dimensional packing of the subunits within the lignin macro-molecule are observed during the simulated biosynthetic process. Branched oligomeric structures thus generated form crosslinks at those positions where the chains grow close enough to form a link. Inter-chain crosslinking usually joins the oligomers into one macromolecule. Intra-chain crosslinks are also formed and result in closed loops. Typically, a macromolecule with molecular weight of approx. 2 x 105 is formed, with internal density of 1.35g/cm3. Various characteristics of the internal structure, such as branching, crosslinking, bond frequencies, and chain length distribution are described. Breakdown of the polymer was also simulated and the effect of closed loops on the weight average molecular weight is shown. The effect of the shape of the biosynthetic space on the degree of crosslinking is discussed and predictions of the overall molecular shape of lignin particles are made.
ERIC Educational Resources Information Center
Levy, Roy; Xu, Yuning; Yel, Nedim; Svetina, Dubravka
2015-01-01
The standardized generalized dimensionality discrepancy measure and the standardized model-based covariance are introduced as tools to critique dimensionality assumptions in multidimensional item response models. These tools are grounded in a covariance theory perspective and associated connections between dimensionality and local independence.…
Modelling Three Dimensional, Tape Spring Based, Space Deployable Structures
NASA Astrophysics Data System (ADS)
Walker, S. J. I.; Kiley, A.; Aglietti, G. S.; Cook, A.; McDonald, A. D.
2012-07-01
Deployable structures are required for many satellite operations, to deploy booms for communications or area deployment for power generation, and many sophisticated mechanisms have been developed for these types of structures. However, tape springs, defined as thin metallic strips with an initially curved cross- section, are an attractive structural solution and hinge mechanism for satellite deployable structures because of their low mass, low cost and general simplicity. They have previously been used to deploy booms and array panels in various configurations that incorporate small two-dimensional tape hinges, but they also have the potential to be used in greater numbers to create larger, more geometrically complicated deployable structures. This publication investigates the applicability of using a simplified modelling approach to predict the deployment dynamics of a three dimensional deployable structure that uses a significant quantity of tape springs. This work builds on previous studies which have focused on the analysis of two dimensional tape spring based structures. The configuration being investigated consists of four walls mounted as a square. Each wall has three fold lines allowing the structure to fold down in a concertina style and each fold line is populated by a series of tape spring hinges mounted in pairs. A total number of around 600 individual tape springs elements are used across the 12 fold lines. A computationally efficient method of simulating the three dimensional deployable structure was studied based on a finite element explicit analysis. Equivalent static and dynamic experimental testing on a breadboard structure is presented allowing a direct comparison of the theoretical and experimental data. It was concluded that this simplified analysis approach is capable of modelling the structural dynamics in the deployment direction for three dimensional structural deployments. As a result, the use of this approach could significantly reduce
Herbert, B R; Molloy, M P; Gooley, A A; Walsh, B J; Bryson, W G; Williams, K L
1998-05-01
In this study, dithiothreitol was replaced by tributyl phosphine as the reducing agent in both the sample solution for the first-dimensional isoelectric focusing and during the immobilised pH gradient (IPG) equilibration procedure. Tributyl phosphine improves protein solubility during isoelectric focusing, which results in shorter run times and increased resolution. Tributyl phosphine is nonionic and thus does not migrate in the IPG, therefore maintaining reducing conditions during the course of the first-dimensional separation. The increased solubility provided by the maintenance of reducing conditions gives improved focusing and decreased horizontal streaking on the subsequent second-dimension gel. The use of tributyl phosphine in the equilibration step allows the procedure to be simplified, incorporating reduction and alkylation in a single step. This is possible because, in direct contrast to dithiothreitol (DTT), tributyl phosphine does not contain a free thiol and therefore does not react with thiol-specific alkylating reagents. PMID:9629925
Volumetric techniques: three-dimensional midface modeling
Pierzchała, Ewa; Placek, Waldemar
2014-01-01
Aging is a complex process caused by many factors. The most important factors include exposure to UV radiation, smoking, facial muscle movement, gravity, loss and displacement of fat and bone resorption. As a symptom of aging, face loses elasticity, volume and cheerful look. While changing face proportions, the dominant part of a face is its bottom instead of the mid part. The use of three-dimensional face modelling techniques, particularly the mid-face – tear through and cheeks, restores the skin firmness, volume and healthy look. For this purpose the hyaluronic acid is used, calcium hydroxyapatite, and L-polylactic acid fillers. Volumetric techniques require precision and proper selection of the filling agent to give a sense of satisfaction to both the patient and the doctor. PMID:25610354
Multiscale modeling of three-dimensional genome
NASA Astrophysics Data System (ADS)
Zhang, Bin; Wolynes, Peter
The genome, the blueprint of life, contains nearly all the information needed to build and maintain an entire organism. A comprehensive understanding of the genome is of paramount interest to human health and will advance progress in many areas, including life sciences, medicine, and biotechnology. The overarching goal of my research is to understand the structure-dynamics-function relationships of the human genome. In this talk, I will be presenting our efforts in moving towards that goal, with a particular emphasis on studying the three-dimensional organization, the structure of the genome with multi-scale approaches. Specifically, I will discuss the reconstruction of genome structures at both interphase and metaphase by making use of data from chromosome conformation capture experiments. Computationally modeling of chromatin fiber at atomistic level from first principles will also be presented as our effort for studying the genome structure from bottom up.
Reduced order modeling of fluid/structure interaction.
Barone, Matthew Franklin; Kalashnikova, Irina; Segalman, Daniel Joseph; Brake, Matthew Robert
2009-11-01
This report describes work performed from October 2007 through September 2009 under the Sandia Laboratory Directed Research and Development project titled 'Reduced Order Modeling of Fluid/Structure Interaction.' This project addresses fundamental aspects of techniques for construction of predictive Reduced Order Models (ROMs). A ROM is defined as a model, derived from a sequence of high-fidelity simulations, that preserves the essential physics and predictive capability of the original simulations but at a much lower computational cost. Techniques are developed for construction of provably stable linear Galerkin projection ROMs for compressible fluid flow, including a method for enforcing boundary conditions that preserves numerical stability. A convergence proof and error estimates are given for this class of ROM, and the method is demonstrated on a series of model problems. A reduced order method, based on the method of quadratic components, for solving the von Karman nonlinear plate equations is developed and tested. This method is applied to the problem of nonlinear limit cycle oscillations encountered when the plate interacts with an adjacent supersonic flow. A stability-preserving method for coupling the linear fluid ROM with the structural dynamics model for the elastic plate is constructed and tested. Methods for constructing efficient ROMs for nonlinear fluid equations are developed and tested on a one-dimensional convection-diffusion-reaction equation. These methods are combined with a symmetrization approach to construct a ROM technique for application to the compressible Navier-Stokes equations.
Reducing Spatial Data Complexity for Classification Models
Ruta, Dymitr; Gabrys, Bogdan
2007-11-29
Intelligent data analytics gradually becomes a day-to-day reality of today's businesses. However, despite rapidly increasing storage and computational power current state-of-the-art predictive models still can not handle massive and noisy corporate data warehouses. What is more adaptive and real-time operational environment requires multiple models to be frequently retrained which further hinders their use. Various data reduction techniques ranging from data sampling up to density retention models attempt to address this challenge by capturing a summarised data structure, yet they either do not account for labelled data or degrade the classification performance of the model trained on the condensed dataset. Our response is a proposition of a new general framework for reducing the complexity of labelled data by means of controlled spatial redistribution of class densities in the input space. On the example of Parzen Labelled Data Compressor (PLDC) we demonstrate a simulatory data condensation process directly inspired by the electrostatic field interaction where the data are moved and merged following the attracting and repelling interactions with the other labelled data. The process is controlled by the class density function built on the original data that acts as a class-sensitive potential field ensuring preservation of the original class density distributions, yet allowing data to rearrange and merge joining together their soft class partitions. As a result we achieved a model that reduces the labelled datasets much further than any competitive approaches yet with the maximum retention of the original class densities and hence the classification performance. PLDC leaves the reduced dataset with the soft accumulative class weights allowing for efficient online updates and as shown in a series of experiments if coupled with Parzen Density Classifier (PDC) significantly outperforms competitive data condensation methods in terms of classification performance at the
Reducing Spatial Data Complexity for Classification Models
NASA Astrophysics Data System (ADS)
Ruta, Dymitr; Gabrys, Bogdan
2007-11-01
Intelligent data analytics gradually becomes a day-to-day reality of today's businesses. However, despite rapidly increasing storage and computational power current state-of-the-art predictive models still can not handle massive and noisy corporate data warehouses. What is more adaptive and real-time operational environment requires multiple models to be frequently retrained which further hinders their use. Various data reduction techniques ranging from data sampling up to density retention models attempt to address this challenge by capturing a summarised data structure, yet they either do not account for labelled data or degrade the classification performance of the model trained on the condensed dataset. Our response is a proposition of a new general framework for reducing the complexity of labelled data by means of controlled spatial redistribution of class densities in the input space. On the example of Parzen Labelled Data Compressor (PLDC) we demonstrate a simulatory data condensation process directly inspired by the electrostatic field interaction where the data are moved and merged following the attracting and repelling interactions with the other labelled data. The process is controlled by the class density function built on the original data that acts as a class-sensitive potential field ensuring preservation of the original class density distributions, yet allowing data to rearrange and merge joining together their soft class partitions. As a result we achieved a model that reduces the labelled datasets much further than any competitive approaches yet with the maximum retention of the original class densities and hence the classification performance. PLDC leaves the reduced dataset with the soft accumulative class weights allowing for efficient online updates and as shown in a series of experiments if coupled with Parzen Density Classifier (PDC) significantly outperforms competitive data condensation methods in terms of classification performance at the
A Dimensionally Reduced Clustering Methodology for Heterogeneous Occupational Medicine Data Mining.
Saâdaoui, Foued; Bertrand, Pierre R; Boudet, Gil; Rouffiac, Karine; Dutheil, Frédéric; Chamoux, Alain
2015-10-01
Clustering is a set of techniques of the statistical learning aimed at finding structures of heterogeneous partitions grouping homogenous data called clusters. There are several fields in which clustering was successfully applied, such as medicine, biology, finance, economics, etc. In this paper, we introduce the notion of clustering in multifactorial data analysis problems. A case study is conducted for an occupational medicine problem with the purpose of analyzing patterns in a population of 813 individuals. To reduce the data set dimensionality, we base our approach on the Principal Component Analysis (PCA), which is the statistical tool most commonly used in factorial analysis. However, the problems in nature, especially in medicine, are often based on heterogeneous-type qualitative-quantitative measurements, whereas PCA only processes quantitative ones. Besides, qualitative data are originally unobservable quantitative responses that are usually binary-coded. Hence, we propose a new set of strategies allowing to simultaneously handle quantitative and qualitative data. The principle of this approach is to perform a projection of the qualitative variables on the subspaces spanned by quantitative ones. Subsequently, an optimal model is allocated to the resulting PCA-regressed subspaces. PMID:26357403
Three-dimensional modeling equatorial spread F
NASA Astrophysics Data System (ADS)
Huba, J. D.; Krall, J.; Joyce, G.
2008-12-01
Equatorial spread F (ESF) is a low-latitude ionospheric phenomenon that leads to the development of large scale electron density depletions that adversely affect communications and navigation systems. The development of models to understand and predict the onset and evolution of ESF is therefore critically important to a number of space-based systems. To this end, NRL has developed a three-dimensional model of ESF. The global NRL ionosphere model SAMI3 has been modified to simulate a narrow wedge of the post-sunset ionosphere to capture the onset and evolution of ESF. Preliminary results indicate that (1) bubbles can rise to ~ 1600 km, (2) extremely steep ion density gradients can develop in both longitude and latitude, (3) upward plasma velocities approach 1 km/s, and (4) the growth time of the instability is ~eq 15 min. We will also report the effects of meridional and zonal winds on bubble development, as well as ion composition (both atomic and molecular). The simulations will focus on current, low solar activity conditions, and results will be compared to C/NOFS data where available. Research supported by ONR
High dimensional model representation method for fuzzy structural dynamics
NASA Astrophysics Data System (ADS)
Adhikari, S.; Chowdhury, R.; Friswell, M. I.
2011-03-01
Uncertainty propagation in multi-parameter complex structures possess significant computational challenges. This paper investigates the possibility of using the High Dimensional Model Representation (HDMR) approach when uncertain system parameters are modeled using fuzzy variables. In particular, the application of HDMR is proposed for fuzzy finite element analysis of linear dynamical systems. The HDMR expansion is an efficient formulation for high-dimensional mapping in complex systems if the higher order variable correlations are weak, thereby permitting the input-output relationship behavior to be captured by the terms of low-order. The computational effort to determine the expansion functions using the α-cut method scales polynomically with the number of variables rather than exponentially. This logic is based on the fundamental assumption underlying the HDMR representation that only low-order correlations among the input variables are likely to have significant impacts upon the outputs for most high-dimensional complex systems. The proposed method is first illustrated for multi-parameter nonlinear mathematical test functions with fuzzy variables. The method is then integrated with a commercial finite element software (ADINA). Modal analysis of a simplified aircraft wing with fuzzy parameters has been used to illustrate the generality of the proposed approach. In the numerical examples, triangular membership functions have been used and the results have been validated against direct Monte Carlo simulations. It is shown that using the proposed HDMR approach, the number of finite element function calls can be reduced without significantly compromising the accuracy.
New two-dimensional quantum models with shape invariance
Cannata, F.; Ioffe, M. V.; Nishnianidze, D. N.
2011-02-15
Two-dimensional quantum models which obey the property of shape invariance are built in the framework of polynomial two-dimensional supersymmetric quantum mechanics. They are obtained using the expressions for known one-dimensional shape invariant potentials. The constructed Hamiltonians are integrable with symmetry operators of fourth order in momenta, and they are not amenable to the conventional separation of variables.
Park, Hyunjin; Yang, Jin-ju; Seo, Jongbum; Lee, Jong-min
2013-08-29
Neuroimaging features derived from the cortical surface provide important information in detecting changes related to the progression of Alzheimer's disease (AD). Recent widespread adoption of neuroimaging has allowed researchers to study longitudinal data in AD. We adopted cortical thickness and sulcal depth, parameterized by three-dimensional meshes, from magnetic resonance imaging as the surface features. The cortical feature is high-dimensional, and it is difficult to use directly with a classifier because of the "small sample size" problem. We applied manifold learning to reduce the dimensionality of the feature and then tested the usage of the dimensionality reduced feature with a support vector machine classifier. Principal component analysis (PCA) was chosen as the method of manifold learning. PCA was applied to a region of interest within the cortical surface. We used 30 normal, 30 mild cognitive impairment (MCI) and 12 conversion cases taken from the ADNI database. The classifier was trained using the cortical features extracted from normal and MCI patients. The classifier was tested for the 12 conversion patients only using the imaging data before the actual conversion. The conversion was predicted early with an accuracy of 83%. PMID:23827219
Triple Resonance Solid State NMR Experiments with Reduced Dimensionality Evolution Periods
NASA Astrophysics Data System (ADS)
Astrof, Nathan S.; Lyon, Charles E.; Griffin, Robert G.
2001-10-01
Two solid state NMR triple resonance experiments which utilize the simultaneous incrementation of two chemical shift evolution periods to obtain a spectrum with reduced dimensionality are described. The CON CA experiment establishes the correlation of 13Ci-1 to 13Cαi and 15Ni by simultaneously encoding the 13COi-1 and 15Ni chemical shifts. The CAN COCA experiment establishes the correlation 13Cai and 15COi to 13Cαi-1 and 15Ni-1 within a single experiment by simultaneous encoding of the 13Cαi and 15Ni chemical shifts. This experiment establishes sequential amino acid correlations in close analogy to the solution state HNCA experiment. Reduced dimensionality 2D experiments are a practical alternative to recording multiple 3D data sets for the purpose of obtaining sequence-specific resonance assignments of peptides and proteins in the solid state.
Reduced cost mission design using surrogate models
NASA Astrophysics Data System (ADS)
Feldhacker, Juliana D.; Jones, Brandon A.; Doostan, Alireza; Hampton, Jerrad
2016-01-01
This paper uses surrogate models to reduce the computational cost associated with spacecraft mission design in three-body dynamical systems. Sampling-based least squares regression is used to project the system response onto a set of orthogonal bases, providing a representation of the ΔV required for rendezvous as a reduced-order surrogate model. Models are presented for mid-field rendezvous of spacecraft in orbits in the Earth-Moon circular restricted three-body problem, including a halo orbit about the Earth-Moon L2 libration point (EML-2) and a distant retrograde orbit (DRO) about the Moon. In each case, the initial position of the spacecraft, the time of flight, and the separation between the chaser and the target vehicles are all considered as design inputs. The results show that sample sizes on the order of 102 are sufficient to produce accurate surrogates, with RMS errors reaching 0.2 m/s for the halo orbit and falling below 0.01 m/s for the DRO. A single function call to the resulting surrogate is up to two orders of magnitude faster than computing the same solution using full fidelity propagators. The expansion coefficients solved for in the surrogates are then used to conduct a global sensitivity analysis of the ΔV on each of the input parameters, which identifies the separation between the spacecraft as the primary contributor to the ΔV cost. Finally, the models are demonstrated to be useful for cheap evaluation of the cost function in constrained optimization problems seeking to minimize the ΔV required for rendezvous. These surrogate models show significant advantages for mission design in three-body systems, in terms of both computational cost and capabilities, over traditional Monte Carlo methods.
Gao, J. M. Liu, Y.; Li, W.; Cui, Z. Y.; Dong, Y. B.; Lu, J.; Xia, Z. W.; Yi, P.; Yang, Q. W.
2014-04-15
Linear regularization has been applied to the HL-2A infrared imaging bolometer to reconstruct local plasma emission with one-dimensional (1D) and three-dimensional (3D) modeling under the assumption of toroidal symmetry. In the 3D modeling, a new method to calculate the detector point response function is introduced. This method can be adapted to an arbitrarily shaped pinhole. With the full 3D treatment of the detector geometry, up to 50% of the mean-squared error is reduced compared with the 1D modeling. This is attributed to the effects of finite detector size being taken into account in the 3D modeling. Meanwhile, the number of the bolometer pixels has been optimized to 20 × 20 by making a trade-off between the number of bolometer pixels and the sensitivity of the system. The plasma radiated power density distributions have been calculated as a demonstration using 1D modeling and 3D modeling, respectively.
Reduced order models for nonlinear aerodynamics
NASA Technical Reports Server (NTRS)
Mahajan, Aparajit J.; Dowell, Earl H.; Bliss, Donald B.
1988-01-01
Reduced order models are needed for reliable, efficient and accurate prediction of aerodynamic forces to analyze fluid structure interaction problems in turbomachinery, including propfans. Here, a finite difference, time marching Navier-Stokes code is validated for unsteady airfoil motion by comparing results with those from classical potential flow. The Navier-Stokes code is then analyzed for calculation of primitive and exact estimates of eigenvalues and eigenvectors associated with fluid-airfoil interaction. A variational formulation for the Euler equations and Navier-Stokes equations will be the basis for reduction of order through an eigenvector transformation.
NASA Astrophysics Data System (ADS)
Bhattacharjee, Satyaki; Matouš, Karel
2016-05-01
A new manifold-based reduced order model for nonlinear problems in multiscale modeling of heterogeneous hyperelastic materials is presented. The model relies on a global geometric framework for nonlinear dimensionality reduction (Isomap), and the macroscopic loading parameters are linked to the reduced space using a Neural Network. The proposed model provides both homogenization and localization of the multiscale solution in the context of computational homogenization. To construct the manifold, we perform a number of large three-dimensional simulations of a statistically representative unit cell using a parallel finite strain finite element solver. The manifold-based reduced order model is verified using common principles from the machine-learning community. Both homogenization and localization of the multiscale solution are demonstrated on a large three-dimensional example and the local microscopic fields as well as the homogenized macroscopic potential are obtained with acceptable engineering accuracy.
Adaptive h -refinement for reduced-order models: ADAPTIVE h -refinement for reduced-order models
Carlberg, Kevin T.
2014-11-05
Our work presents a method to adaptively refine reduced-order models a posteriori without requiring additional full-order-model solves. The technique is analogous to mesh-adaptive h-refinement: it enriches the reduced-basis space online by ‘splitting’ a given basis vector into several vectors with disjoint support. The splitting scheme is defined by a tree structure constructed offline via recursive k-means clustering of the state variables using snapshot data. This method identifies the vectors to split online using a dual-weighted-residual approach that aims to reduce error in an output quantity of interest. The resulting method generates a hierarchy of subspaces online without requiring large-scale operationsmore » or full-order-model solves. Furthermore, it enables the reduced-order model to satisfy any prescribed error tolerance regardless of its original fidelity, as a completely refined reduced-order model is mathematically equivalent to the original full-order model. Experiments on a parameterized inviscid Burgers equation highlight the ability of the method to capture phenomena (e.g., moving shocks) not contained in the span of the original reduced basis.« less
Predicting RNA folding thermodynamics with a reduced chain representation model.
Cao, Song; Chen, Shi-Jie
2005-12-01
Based on the virtual bond representation for the nucleotide backbone, we develop a reduced conformational model for RNA. We use the experimentally measured atomic coordinates to model the helices and use the self-avoiding walks in a diamond lattice to model the loop conformations. The atomic coordinates of the helices and the lattice representation for the loops are matched at the loop-helix junction, where steric viability is accounted for. Unlike the previous simplified lattice-based models, the present virtual bond model can account for the atomic details of realistic three-dimensional RNA structures. Based on the model, we develop a statistical mechanical theory for RNA folding energy landscapes and folding thermodynamics. Tests against experiments show that the theory can give much more improved predictions for the native structures, the thermal denaturation curves, and the equilibrium folding/unfolding pathways than the previous models. The application of the model to the P5abc region of Tetrahymena group I ribozyme reveals the misfolded intermediates as well as the native-like intermediates in the equilibrium folding process. Moreover, based on the free energy landscape analysis for each and every loop mutation, the model predicts five lethal mutations that can completely alter the free energy landscape and the folding stability of the molecule. PMID:16251382
Towards automatic calibration of 2-dimensional flood propagation models
NASA Astrophysics Data System (ADS)
Fabio, P.; Aronica, G. T.; Apel, H.
2009-11-01
Hydraulic models for flood propagation description are an essential tool in many fields, e.g. civil engineering, flood hazard and risk assessments, evaluation of flood control measures, etc. Nowadays there are many models of different complexity regarding the mathematical foundation and spatial dimensions available, and most of them are comparatively easy to operate due to sophisticated tools for model setup and control. However, the calibration of these models is still underdeveloped in contrast to other models like e.g. hydrological models or models used in ecosystem analysis. This has basically two reasons: first, the lack of relevant data against the models can be calibrated, because flood events are very rarely monitored due to the disturbances inflicted by them and the lack of appropriate measuring equipment in place. Secondly, especially the two-dimensional models are computationally very demanding and therefore the use of available sophisticated automatic calibration procedures is restricted in many cases. This study takes a well documented flood event in August 2002 at the Mulde River in Germany as an example and investigates the most appropriate calibration strategy for a full 2-D hyperbolic finite element model. The model independent optimiser PEST, that gives the possibility of automatic calibrations, is used. The application of the parallel version of the optimiser to the model and calibration data showed that a) it is possible to use automatic calibration in combination of 2-D hydraulic model, and b) equifinality of model parameterisation can also be caused by a too large number of degrees of freedom in the calibration data in contrast to a too simple model setup. In order to improve model calibration and reduce equifinality a method was developed to identify calibration data with likely errors that obstruct model calibration.
Three-Dimensional Tectonic Model of Taiwan
NASA Astrophysics Data System (ADS)
Wu, Francis; Kuo-Chen, Hao; McIntosh, kirk
2014-05-01
We built a three-dimensional model of the interactions of the Eurasian plate (EUP) the Philippine Sea plate (PSP) and the collisional orogen, in and around Taiwan. The model is based on the results of comprehensive, milt-prong TAIGER experiments on land and at sea as well as other existing data. The clockwise rotating PSP moves NWW at ~8 cm/year relative to the Taiwan Strait. Under northern Taiwan the northward subducting PSP terminates near the edge of eastern Taiwan and collides with EUP at in increasing depth toward the north. Mountain building due to collision of EUP and PSP tapers off where the PSP goes below about 60 km. The PSP in the asthenosphere continues to advance NWW-ward. In central Taiwan PSP and EUP collide fully, lithosphere against lithosphere in the upper 60 km or so, leading to significant thickening of the crust to about 55 km on the Central Range side and about 35 km on the Coastal Range/Arc side. In between these "roots" a high velocity rise is found. Although a clear, steep dipping high velocity zone under Central Taiwan is detected, it is found not to be associated with seismicity. In southern Taiwan, mountains form over well-defined, seismically active subduction zone. The upper mantle high velocity anomaly appears to be continues with that under central Taiwan, but here an inclined seismic zone is found. In this area the Luzon Arc has not yet encountered the continental shelf - thus arc-continental collision has not yet occurred. The orogeny here may involve inversion of the subducted South China Sea lithosphere, rifted Eurasian continent, and/or escape of continental material from central Taiwan. GPS and Leveling data reflect well the 3-D plate collision model.
Excitonic linewidth of organic quantum wires generated in reduced dimensionality matrices.
Barisien, Thierry; Legrand, Laurent; Mu, Zhao; Hameau, Sophie
2016-05-14
Luminescent organic quantum wires are generated in diacetylene crystalline ultra-thin films grown on orientation-inducing surfaces obtained by poly-tetrafluoroethylene (teflon) deposition. The films are characterized by atomic force microscopy showing that quasi-two-dimensional surroundings are achieved. In this particular environment, pure dephasing processes still determine the wires' homogeneous emission widths, measured using micro-photoluminescence. Coherence times that are slightly shorter in the films also exhibit a distinctive temperature dependence. A model inspired by semiconductor physics for exciton-phonon coupling accounts for the observed behaviour and evidences the role of matrix dimensionality on the coherence properties. PMID:27108759
Simple Two-Dimensional Corrections for One-Dimensional Pulse Tube Models
NASA Technical Reports Server (NTRS)
Lee, J. M.; Kittel, P.; Timmerhaus, K. D.; Radebaugh, R.
2004-01-01
One-dimensional oscillating flow models are very useful for designing pulse tubes. They are simple to use, not computationally intensive, and the physical relationship between temperature, pressure and mass flow are easy to understand when used in conjunction with phasor diagrams. They do not possess, however, the ability to directly calculate thermal and momentum diffusion in the direction transverse to the oscillating flow. To account for transverse effects, lumped parameter corrections, which are obtained though experiment, must be used. Or two-dimensional solutions of the differential fluid equations must be obtained. A linear two-dimensional solution to the fluid equations has been obtained. The solution provides lumped parameter corrections for one-dimensional models. The model accounts for heat transfer and shear flow between the gas and the tube. The complex Nusselt number and complex shear wall are useful in describing these corrections, with phase relations and amplitudes scaled with the Prandtl and Valensi numbers. The calculated ratio, a, between a two-dimensional solution of the oscillating temperature and velocity and a one-dimensional solution for the same shows a scales linearly with Va for Va less than 30. In this region alpha less than 0.5, that is, the enthalpy flow calculated with a two-dimensional model is 50% of a calculation using a one-dimensional model. For Va greater than 250, alpha = 0.8, showing that diffusion is still important even when it is confined to a thing layer near the tube wall.
A Reduced Model for the Magnetorotational Instability
NASA Astrophysics Data System (ADS)
Jamroz, Ben; Julien, Keith; Knobloch, Edgar
2008-11-01
The magnetorotational instability is investigated within the shearing box approximation in the large Elsasser number regime. In this regime, which is of fundamental importance to astrophysical accretion disk theory, shear is the dominant source of energy, but the instability itself requires the presence of a weaker vertical magnetic field. Dissipative effects are weaker still. However, they are sufficiently large to permit a nonlinear feedback mechanism whereby the turbulent stresses generated by the MRI act on and modify the local background shear in the angular velocity profile. To date this response has been omitted in shearing box simulations and is captured by a reduced pde model derived here from the global MHD fluid equations using multiscale asymptotic perturbation theory. Results from numerical simulations of the reduced pde model indicate a linear phase of exponential growth followed by a nonlinear adjustment to algebraic growth and decay in the fluctuating quantities. Remarkably, the velocity and magnetic field correlations associated with these algebraic growth and decay laws conspire to achieve saturation of the angular momentum transport. The inclusion of subdominant ohmic dissipation arrests the algebraic growth of the fluctuations on a longer, dissipative time scale.
Three-dimensional micromechanical modeling of voided polymeric materials
NASA Astrophysics Data System (ADS)
Danielsson, M.; Parks, D. M.; Boyce, M. C.
2002-02-01
A three-dimensional micromechanical unit cell model for particle-filled materials is presented. The cell model is based on a Voronoi tessellation of particles arranged on a body-centered cubic (BCC) array. The three-dimensionality of the present cell model enables the study of several deformation modes, including uniaxial, plane strain and simple shear deformations, as well as arbitrary principal stress states. The unit cell model is applied to studies on the micromechanical and macromechanical behavior of rubber-toughened polycarbonate. Different load cases are examined, including plane strain deformation, simple shear deformation and principal stress states. For a constant macroscopic strain rate, the different load cases show that the macroscopic flow strength of the blend decreases with an increase in void volume fraction, as expected. The main mechanism for plastic deformation is broad shear banding across inter-particle ligaments. The distributed nature of plastic straining acts to reduce the amount of macroscopic strain softening in the blend as the initial void volume fraction is increased. In the case of plane strain deformation, the plastic flow is observed to initiate across inter-particle ligaments in the direction of constraint. This particular mode of deformation could not have been captured using a two-dimensional, plane strain idealization of cylindrical voids in a matrix. The potential for localized crazing and/or cavitation in the matrix is addressed. It is observed that the introduction of voids acts to relieve hydrostatic stress in the matrix material, compared to the homopolymer. It is also seen that the predicted peak hydrostatic stress in the matrix is higher under plane strain deformation than under triaxial tension (with equal lateral stresses), for the same macroscopic stress triaxiality. The effect of void volume fraction on the macroscopic uniaxial tension behavior of the different blends is examined using a Considère construction for
Development and Validation of a 3-Dimensional CFB Furnace Model
NASA Astrophysics Data System (ADS)
Vepsäläinen, Arl; Myöhänen, Karl; Hyppäneni, Timo; Leino, Timo; Tourunen, Antti
At Foster Wheeler, a three-dimensional CFB furnace model is essential part of knowledge development of CFB furnace process regarding solid mixing, combustion, emission formation and heat transfer. Results of laboratory and pilot scale phenomenon research are utilized in development of sub-models. Analyses of field-test results in industrial-scale CFB boilers including furnace profile measurements are simultaneously carried out with development of 3-dimensional process modeling, which provides a chain of knowledge that is utilized as feedback for phenomenon research. Knowledge gathered by model validation studies and up-to-date parameter databases are utilized in performance prediction and design development of CFB boiler furnaces. This paper reports recent development steps related to modeling of combustion and formation of char and volatiles of various fuel types in CFB conditions. Also a new model for predicting the formation of nitrogen oxides is presented. Validation of mixing and combustion parameters for solids and gases are based on test balances at several large-scale CFB boilers combusting coal, peat and bio-fuels. Field-tests including lateral and vertical furnace profile measurements and characterization of solid materials provides a window for characterization of fuel specific mixing and combustion behavior in CFB furnace at different loads and operation conditions. Measured horizontal gas profiles are projection of balance between fuel mixing and reactions at lower part of furnace and are used together with both lateral temperature profiles at bed and upper parts of furnace for determination of solid mixing and combustion model parameters. Modeling of char and volatile based formation of NO profiles is followed by analysis of oxidizing and reducing regions formed due lower furnace design and mixing characteristics of fuel and combustion airs effecting to formation ofNO furnace profile by reduction and volatile-nitrogen reactions. This paper presents
A New Method for Reducing Dimensional Variability of Extruded Hollow Sections
NASA Astrophysics Data System (ADS)
Baringbing, Henry Ako; Welo, Torgeir; Søvik, Odd Perry
2007-05-01
Crash boxes are one recent application example of aluminum extrusions in the automotive industry. A crash box is typically made by welding an extruded tube (tower) to a foot plate at one end, providing the mounting features towards the rail tip of the vehicle. When using fully automated welding processes, the exterior dimensions of the tower have to be within a tolerance of typically +/- 0.25 mm in order to provide consistent weld properties. However, the extrusion process commonly introduces dimensional variations exceeding those required for good weld quality. In order to avoid costly hydro-forming processes, a new mechanical calibration process has been developed. This method represents a means to achieve sufficient dimensional accuracy of the crash box tower prior to welding. A prototype die was made to validate the calibration process using alloy AA6063 T4 extrusions. Tensile tests were performed in order to determine material parameters. The geometry of each tower was carefully measured before and after forming to determine the dimensional capability of the calibration process. Statistical methods were combined with FEA simulations and analytical methods to establish surrogate models and response surfaces. The results show that the calibration process is an effective method for improving the dimensional accuracy of crash box profiles, providing significant improvements in dimensional capability. It is concluded that the methodology has a high industrial potential.
An Extensible Reduced Order Model Builder for Simulation and Modeling
2012-09-28
REVEAL is a software framework for building reduced order models (surrogate models) for high fidelity complex scientific simulations. REVEAL is designed to do reduced order modeling and sensitivity analysis for scientific simulations. REVEAL incorporates a range of sampling and regression methods. It provides complete user environment and is adaptable to new simulators, runs jobs on any computing platform of choice, automatically post processes simulation results and provides a range of data analysis tools. The software is generic and can easily be extended to incorporate new methods, simulators.
An Extensible Reduced Order Model Builder for Simulation and Modeling
Energy Science and Technology Software Center (ESTSC)
2012-09-28
REVEAL is a software framework for building reduced order models (surrogate models) for high fidelity complex scientific simulations. REVEAL is designed to do reduced order modeling and sensitivity analysis for scientific simulations. REVEAL incorporates a range of sampling and regression methods. It provides complete user environment and is adaptable to new simulators, runs jobs on any computing platform of choice, automatically post processes simulation results and provides a range of data analysis tools. The softwaremore » is generic and can easily be extended to incorporate new methods, simulators.« less
One-dimensional transport equation models for sound energy propagation in long spaces: theory.
Jing, Yun; Larsen, Edward W; Xiang, Ning
2010-04-01
In this paper, a three-dimensional transport equation model is developed to describe the sound energy propagation in a long space. Then this model is reduced to a one-dimensional model by approximating the solution using the method of weighted residuals. The one-dimensional transport equation model directly describes the sound energy propagation in the "long" dimension and deals with the sound energy in the "short" dimensions by prescribed functions. Also, the one-dimensional model consists of a coupled set of N transport equations. Only N=1 and N=2 are discussed in this paper. For larger N, although the accuracy could be improved, the calculation time is expected to significantly increase, which diminishes the advantage of the model in terms of its computational efficiency. PMID:20370013
Dimensional crossover in a Fermi gas and a cross-dimensional Tomonaga-Luttinger model
NASA Astrophysics Data System (ADS)
Lang, Guillaume; Hekking, Frank; Minguzzi, Anna
2016-01-01
We describe the dimensional crossover in a noninteracting Fermi gas in an anisotropic trap, obtained by populating various transverse modes of the trap. We study the dynamical structure factor and drag force. Starting from a dimension d , the (d +1 ) -dimensional case is obtained to a good approximation with relatively few modes. We show that the dynamical structure factor of a gas in a d -dimensional harmonic trap simulates an effective 2 d -dimensional box trap. We focus then on the experimentally relevant situation when only a portion of the gas in harmonic confinement is probed and give a condition to obtain the behavior of a d -dimensional gas in a box. Finally, we propose a generalized Tomonaga-Luttinger model for the multimode configuration and compare the dynamical structure factor in the two-dimensional limit with the exact result, finding that it is accurate in the backscattering region and at low energy.
Reduced-order model based feedback control of the modified Hasegawa-Wakatani model
NASA Astrophysics Data System (ADS)
Goumiri, I. R.; Rowley, C. W.; Ma, Z.; Gates, D. A.; Krommes, J. A.; Parker, J. B.
2013-04-01
In this work, the development of model-based feedback control that stabilizes an unstable equilibrium is obtained for the Modified Hasegawa-Wakatani (MHW) equations, a classic model in plasma turbulence. First, a balanced truncation (a model reduction technique that has proven successful in flow control design problems) is applied to obtain a low dimensional model of the linearized MHW equation. Then, a model-based feedback controller is designed for the reduced order model using linear quadratic regulators. Finally, a linear quadratic Gaussian controller which is more resistant to disturbances is deduced. The controller is applied on the non-reduced, nonlinear MHW equations to stabilize the equilibrium and suppress the transition to drift-wave induced turbulence.
Reduced-order model based feedback control of the modified Hasegawa-Wakatani model
Goumiri, I. R.; Rowley, C. W.; Ma, Z.; Gates, D. A.; Krommes, J. A.; Parker, J. B.
2013-04-15
In this work, the development of model-based feedback control that stabilizes an unstable equilibrium is obtained for the Modified Hasegawa-Wakatani (MHW) equations, a classic model in plasma turbulence. First, a balanced truncation (a model reduction technique that has proven successful in flow control design problems) is applied to obtain a low dimensional model of the linearized MHW equation. Then, a model-based feedback controller is designed for the reduced order model using linear quadratic regulators. Finally, a linear quadratic Gaussian controller which is more resistant to disturbances is deduced. The controller is applied on the non-reduced, nonlinear MHW equations to stabilize the equilibrium and suppress the transition to drift-wave induced turbulence.
A three-dimensional transport model for the middle atmosphere
NASA Technical Reports Server (NTRS)
Rasch, Philip J.; Tie, Xuexi; Boville, Byron A.; Williamson, David L.
1994-01-01
In this paper we describe fundamental properties of an 'off-line' three-dimensional transport model, that is, a model which uses prescribed rather than predicted winds. The model is currently used primarily for studying problems of the middle atmosphere because we have not (yet) incorporated a formulation for the convective transport of trace species, a prerequisite for many tropospheric problems. The off-line model is simpler and less expensive than a model which predicts the wind and mass evolution (an 'on-line' model), but it is more complex than the two-dimensional (2-D) zonally averaged transport models often used in the study of chemistry and transport in the middle atmosphere. It thus serves as a model of intermediate complexity and can fill a useful niche for the study of transport and chemistry. We compare simulations of four tracers, released in the lower stratosphere, in both the on- and off-line models to document the difference resulting from differences in modeling the same problem with this intermediate model. These differences identify the price to be paid in going to a cheaper and simpler calculation. The off-line model transports a tracer in three dimensions. For this reason, it requires fewer approximations than 2-D transport model, which must parameterize the effects of mixing by transient and zonally asymmetric wind features. We compare simulations of the off-line model with simulations of a 2-D model for two problems. First, we compare 2-D and three-dimensional (3-D) models by simulating the emission of an NO(x)-like tracer by a fleet of high-speed aircraft. The off-line model is then used to simulate the transport of C-14 and to contrast its simulation properties to that of the host of 2-D models which participated in an identical simulation in a recent NASA model intercomparison. The off-line model is shown to be somewhat sensitive to the sampling strategy for off-line winds. Simulations with daily averaged winds are in very good qualitative
Dimensionality reduction for uncertainty quantification of nuclear engineering models.
Roderick, O.; Wang, Z.; Anitescu, M.
2011-01-01
The task of uncertainty quantification consists of relating the available information on uncertainties in the model setup to the resulting variation in the outputs of the model. Uncertainty quantification plays an important role in complex simulation models of nuclear engineering, where better understanding of uncertainty results in greater confidence in the model and in the improved safety and efficiency of engineering projects. In our previous work, we have shown that the effect of uncertainty can be approximated by polynomial regression with derivatives (PRD): a hybrid regression method that uses first-order derivatives of the model output as additional fitting conditions for a polynomial expansion. Numerical experiments have demonstrated the advantage of this approach over classical methods of uncertainty analysis: in precision, computational efficiency, or both. To obtain derivatives, we used automatic differentiation (AD) on the simulation code; hand-coded derivatives are acceptable for simpler models. We now present improvements on the method. We use a tuned version of the method of snapshots, a technique based on proper orthogonal decomposition (POD), to set up the reduced order representation of essential information on uncertainty in the model inputs. The automatically obtained sensitivity information is required to set up the method. Dimensionality reduction in combination with PRD allows analysis on a larger dimension of the uncertainty space (>100), at modest computational cost.
Three-Dimensional Lithium-Ion Battery Model (Presentation)
Kim, G. H.; Smith, K.
2008-05-01
Nonuniform battery physics can cause unexpected performance and life degradations in lithium-ion batteries; a three-dimensional cell performance model was developed by integrating an electrode-scale submodel using a multiscale modeling scheme.
NASA Astrophysics Data System (ADS)
Li, Weixuan; Lin, Guang; Li, Bing
2016-09-01
Many uncertainty quantification (UQ) approaches suffer from the curse of dimensionality, that is, their computational costs become intractable for problems involving a large number of uncertainty parameters. In these situations, the classic Monte Carlo often remains the preferred method of choice because its convergence rate O (n - 1 / 2), where n is the required number of model simulations, does not depend on the dimension of the problem. However, many high-dimensional UQ problems are intrinsically low-dimensional, because the variation of the quantity of interest (QoI) is often caused by only a few latent parameters varying within a low-dimensional subspace, known as the sufficient dimension reduction (SDR) subspace in the statistics literature. Motivated by this observation, we propose two inverse regression-based UQ algorithms (IRUQ) for high-dimensional problems. Both algorithms use inverse regression to convert the original high-dimensional problem to a low-dimensional one, which is then efficiently solved by building a response surface for the reduced model, for example via the polynomial chaos expansion. The first algorithm, which is for the situations where an exact SDR subspace exists, is proved to converge at rate O (n-1), hence much faster than MC. The second algorithm, which doesn't require an exact SDR, employs the reduced model as a control variate to reduce the error of the MC estimate. The accuracy gain could still be significant, depending on how well the reduced model approximates the original high-dimensional one. IRUQ also provides several additional practical advantages: it is non-intrusive; it does not require computing the high-dimensional gradient of the QoI; and it reports an error bar so the user knows how reliable the result is.
Xu, Chunxiu; Cai, Longfei
2014-02-01
A novel three-dimensional hydrodynamic focusing microfluidic device integrated with high-throughput cell sampling and detection of intracellular contents is presented. It has a pivotal role in maintaining the reducing environment in cells. Intracellular reducing species such as vitamin C and glutathione in normal and tumor cells were labeled by a newly synthesized 2,2,6,6-tetramethyl-piperidine-1-oxyl-based fluorescent probe. Hepatocytes are adherent cells, which are prone to attaching to the channel surface. To avoid the attachment of cells on the channel surface, a single channel microchip with three sheath-flow channels located on both sides of and below the sampling channel was developed. Hydrostatic pressure generated by emptying the sample waste reservoir was used as driving force of fluid on the microchip. Owing to the difference between the liquid levels of the reservoirs, the labeled cells were three-dimensional hydrodynamically focused and transported from the sample reservoir to the sample waste reservoir. Hydrostatic pressure takes advantage of its ease of generation on a microfluidic chip without any external pressure pump, which drives three sheath-flow streams to constrain a sample flow stream into a narrow stream to avoid blockage of the sampling channel by adhered cells. The intracellular reducing levels of HepG2 cells and L02 cells were detected by home-built laser-induced fluorescence detector. The analysis throughput achieved in this microfluidic system was about 59-68 cells/min. PMID:23297173
Generalized Reduced Order Modeling of Aeroservoelastic Systems
NASA Astrophysics Data System (ADS)
Gariffo, James Michael
Transonic aeroelastic and aeroservoelastic (ASE) modeling presents a significant technical and computational challenge. Flow fields with a mixture of subsonic and supersonic flow, as well as moving shock waves, can only be captured through high-fidelity CFD analysis. With modern computing power, it is realtively straightforward to determine the flutter boundary for a single structural configuration at a single flight condition, but problems of larger scope remain quite costly. Some such problems include characterizing a vehicle's flutter boundary over its full flight envelope, optimizing its structural weight subject to aeroelastic constraints, and designing control laws for flutter suppression. For all of these applications, reduced-order models (ROMs) offer substantial computational savings. ROM techniques in general have existed for decades, and the methodology presented in this dissertation builds on successful previous techniques to create a powerful new scheme for modeling aeroelastic systems, and predicting and interpolating their transonic flutter boundaries. In this method, linear ASE state-space models are constructed from modal structural and actuator models coupled to state-space models of the linearized aerodynamic forces through feedback loops. Flutter predictions can be made from these models through simple eigenvalue analysis of their state-transition matrices for an appropriate set of dynamic pressures. Moreover, this analysis returns the frequency and damping trend of every aeroelastic branch. In contrast, determining the critical dynamic pressure by direct time-marching CFD requires a separate run for every dynamic pressure being analyzed simply to obtain the trend for the critical branch. The present ROM methodology also includes a new model interpolation technique that greatly enhances the benefits of these ROMs. This enables predictions of the dynamic behavior of the system for flight conditions where CFD analysis has not been explicitly
Reduced-Order Model Based Feedback Control For Modified Hasegawa-Wakatani Model
Goumiri, I. R.; Rowley, C. W.; Ma, Z.; Gates, D. A.; Krommes, J. A.; Parker, J. B.
2013-01-28
In this work, the development of model-based feedback control that stabilizes an unstable equilibrium is obtained for the Modi ed Hasegawa-Wakatani (MHW) equations, a classic model in plasma turbulence. First, a balanced truncation (a model reduction technique that has proven successful in ow control design problems) is applied to obtain a low dimensional model of the linearized MHW equation. Then a modelbased feedback controller is designed for the reduced order model using linear quadratic regulators (LQR). Finally, a linear quadratic gaussian (LQG) controller, which is more resistant to disturbances is deduced. The controller is applied on the non-reduced, nonlinear MHW equations to stabilize the equilibrium and suppress the transition to drift-wave induced turbulence.
Low-Dimensional Dynamical Models of Thermal Convection
NASA Technical Reports Server (NTRS)
Liakopoulos, Anthony
1996-01-01
A low-dimensional dynamic model for transitional buoyancy-driven flow in a differentially heated tall enclosure is presented. The full governing partial differential equations with the associated boundary conditions are solved by a spectral element method for a cavity of aspect ratio A=20. Proper orthogonal decomposition is applied to the oscillatory solution at Prandtl number Pr=P tau (omega) = 0.71 and Grashof number G tau (omega) = 3.2 x 10 (exp 4) to construct empirical eigenfunctions. Using the four most energetic empirical eigenfunctions for the velocity and temperature as basis functions and applying Galerkin's method, a reduced model consisting of eight nonlinear ordinary differential equations is obtained. Close to the 'design' conditions (P tau(omega) G tau(omega)), the low-order model (LOM) predictions are in excellent agreement with the predictions of the full model. In particular, the critical Grashof number at the onset of the first temporal flow instability (Hopf bifurcation) was well as the frequency and amplitude of oscillations at supercritical conditions are in excellent agreement with the predictions of the full model. Far from the 'design' conditions, the LOM predicts the existence of multiple stable steady solutions at large values of G tau, and a unique stable steady solution at small values of G tau, and exhibits hysteretic behavior that is qualitatively similar to that observed in direct numerical simulations based on the full model.
Reduced-Order Aerodynamic Model and Its Application to a Nonlinear Aeroelastic System
NASA Technical Reports Server (NTRS)
Tang, Deman; Conner, Mark D.; Dowell, Earl H.
1998-01-01
Starting from a finite state model for a two-dimensional aerodynamic flow over an airfoil, the eigenmodes of the aerodynamic flow are determined. Using a small number of these aerodynamic eigenmodes, ie., a reduced-order model, the aeroelastic model is formed by coupling them to a typical section structural model with a trailing-edge flap. A free-play nonlinearity is modeled. Results are shown from the finite state model, the reduced-order model, and previous theoretical and experimental work. All results are in good agreement.
Reduced order model of draft tube flow
NASA Astrophysics Data System (ADS)
Rudolf, P.; Štefan, D.
2014-03-01
Swirling flow with compact coherent structures is very good candidate for proper orthogonal decomposition (POD), i.e. for decomposition into eigenmodes, which are the cornerstones of the flow field. Present paper focuses on POD of steady flows, which correspond to different operating points of Francis turbine draft tube flow. Set of eigenmodes is built using a limited number of snapshots from computational simulations. Resulting reduced order model (ROM) describes whole operating range of the draft tube. ROM enables to interpolate in between the operating points exploiting the knowledge about significance of particular eigenmodes and thus reconstruct the velocity field in any operating point within the given range. Practical example, which employs axisymmetric simulations of the draft tube flow, illustrates accuracy of ROM in regions without vortex breakdown together with need for higher resolution of the snapshot database close to location of sudden flow changes (e.g. vortex breakdown). ROM based on POD interpolation is very suitable tool for insight into flow physics of the draft tube flows (especially energy transfers in between different operating points), for supply of data for subsequent stability analysis or as an initialization database for advanced flow simulations.
Three dimensional water quality modeling of a shallow subtropical estuary.
Wan, Yongshan; Ji, Zhen-Gang; Shen, Jian; Hu, Guangdou; Sun, Detong
2012-12-01
Knowledge of estuarine hydrodynamics and water quality comes mostly from studies of large estuarine systems. The processes affecting algae, nutrients, and dissolved oxygen (DO) in small and shallow subtropical estuaries are relatively less studied. This paper documents the development, calibration, and verification of a three dimensional (3D) water quality model for the St. Lucie Estuary (SLE), a small and shallow estuary located on the east coast of south Florida. The water quality model is calibrated and verified using two years of measured data. Statistical analyses indicate that the model is capable of reproducing key water quality characteristics of the estuary within an acceptable range of accuracy. The calibrated model is further applied to study hydrodynamic and eutrophication processes in the estuary. Modeling results reveal that high algae concentrations in the estuary are likely caused by excessive nutrient and algae supplies in freshwater inflows. While algal blooms may lead to reduced DO concentrations near the bottom of the waterbody, this study indicates that stratification and circulation induced by freshwater inflows may also contribute significantly to bottom water hypoxia in the estuary. It is also found that high freshwater inflows from one of the tributaries can change the circulation pattern and nutrient loading, thereby impacting water quality conditions of the entire estuary. Restoration plans for the SLE ecosystem need to consider both a reduction of nutrient loading and regulation of the freshwater discharge pattern. PMID:23122270
Miniaturized three-dimensional cancer model for drug evaluation.
Lovitt, Carrie J; Shelper, Todd B; Avery, Vicky M
2013-09-01
A more relevant in vitro cell culture model that closely mimics tumor biology and provides better predictive information on anticancer therapies has been the focus of much attention in recent years. We have developed a three-dimensional (3D) human tumor cell culture model that attempts to recreate the in vivo microenvironment and tumor biology in a miniaturized 384-well plate format. This model aims to exploit the potential of 3D cell culture as a screening tool for novel therapeutics for discovery programs. Here we have evaluated a Matrigel™ based induction of 3D tumor formation using standard labware and plate reading equipment. We have demonstrated that with an optimized protocol, reproducible proliferation, and cell viability data can be obtained across a range of cell lines and reagent batches. A panel of reference drugs was used to validate the suitability of the assays for a high throughput drug discovery program. Indicators of assay reproducibility, such as Z'-factor and coefficient of variation, as well as dose response curves confirmed the robustness of the assays. Several methods of drug activity determination were examined, including metabolic and imaging based assays. These data demonstrate this model as a robust tool for drug discovery bridging the gap between monolayer cell culture and animal models, providing insights into drug efficacy at an earlier time point, ultimately reducing costs and high attrition rates. PMID:25310845
Improving a regional model using reduced complexity and parameter estimation
Kelson, Victor A.; Hunt, Randall J.; Haitjema, Henk M.
2002-01-01
The availability of powerful desktop computers and graphical user interfaces for ground water flow models makes possible the construction of ever more complex models. A proposed copper-zinc sulfide mine in northern Wisconsin offers a unique case in which the same hydrologic system has been modeled using a variety of techniques covering a wide range of sophistication and complexity. Early in the permitting process, simple numerical models were used to evaluate the necessary amount of water to be pumped from the mine, reductions in streamflow, and the drawdowns in the regional aquifer. More complex models have subsequently been used in an attempt to refine the predictions. Even after so much modeling effort, questions regarding the accuracy and reliability of the predictions remain. We have performed a new analysis of the proposed mine using the two-dimensional analytic element code GFLOW coupled with the nonlinear parameter estimation code UCODE. The new model is parsimonious, containing fewer than 10 parameters, and covers a region several times larger in areal extent than any of the previous models. The model demonstrates the suitability of analytic element codes for use with parameter estimation codes. The simplified model results are similar to the more complex models; predicted mine inflows and UCODE-derived 95% confidence intervals are consistent with the previous predictions. More important, the large areal extent of the model allowed us to examine hydrological features not included in the previous models, resulting in new insights about the effects that far-field boundary conditions can have on near-field model calibration and parameterization. In this case, the addition of surface water runoff into a lake in the headwaters of a stream while holding recharge constant moved a regional ground watershed divide and resulted in some of the added water being captured by the adjoining basin. Finally, a simple analytical solution was used to clarify the GFLOW model
Reduced modeling of the magnetorotational instability
NASA Astrophysics Data System (ADS)
Jamroz, Ben F.
2009-06-01
well understood. Many recent numerical investigations of this problem are performed in a local domain, where the global cylindrical background state is projected onto a local Cartesian domain. The resulting system is then numerically modeled within a "shearing box" framework to obtain estimates of angular momentum transport and therefore accretion. However, the simplified geometry of the local domain, and the projection of global quantities leads to a model where the instability is able to grow unboundedly. Utilizing disparate characteristic scales, this thesis presents a reduced asymptotic model for the magnetorotational instability that allows a large scale feedback of local stresses (Reynolds, Maxwell and mixed) onto the projected background state. This system is investigated numerically to determine the impact of allowing this feedback on the saturated level of angular momentum transport.
Accelerated gravitational wave parameter estimation with reduced order modeling.
Canizares, Priscilla; Field, Scott E; Gair, Jonathan; Raymond, Vivien; Smith, Rory; Tiglio, Manuel
2015-02-20
Inferring the astrophysical parameters of coalescing compact binaries is a key science goal of the upcoming advanced LIGO-Virgo gravitational-wave detector network and, more generally, gravitational-wave astronomy. However, current approaches to parameter estimation for these detectors require computationally expensive algorithms. Therefore, there is a pressing need for new, fast, and accurate Bayesian inference techniques. In this Letter, we demonstrate that a reduced order modeling approach enables rapid parameter estimation to be performed. By implementing a reduced order quadrature scheme within the LIGO Algorithm Library, we show that Bayesian inference on the 9-dimensional parameter space of nonspinning binary neutron star inspirals can be sped up by a factor of ∼30 for the early advanced detectors' configurations (with sensitivities down to around 40 Hz) and ∼70 for sensitivities down to around 20 Hz. This speedup will increase to about 150 as the detectors improve their low-frequency limit to 10 Hz, reducing to hours analyses which could otherwise take months to complete. Although these results focus on interferometric gravitational wave detectors, the techniques are broadly applicable to any experiment where fast Bayesian analysis is desirable. PMID:25763948
Accelerated Gravitational Wave Parameter Estimation with Reduced Order Modeling
NASA Astrophysics Data System (ADS)
Canizares, Priscilla; Field, Scott E.; Gair, Jonathan; Raymond, Vivien; Smith, Rory; Tiglio, Manuel
2015-02-01
Inferring the astrophysical parameters of coalescing compact binaries is a key science goal of the upcoming advanced LIGO-Virgo gravitational-wave detector network and, more generally, gravitational-wave astronomy. However, current approaches to parameter estimation for these detectors require computationally expensive algorithms. Therefore, there is a pressing need for new, fast, and accurate Bayesian inference techniques. In this Letter, we demonstrate that a reduced order modeling approach enables rapid parameter estimation to be performed. By implementing a reduced order quadrature scheme within the LIGO Algorithm Library, we show that Bayesian inference on the 9-dimensional parameter space of nonspinning binary neutron star inspirals can be sped up by a factor of ˜30 for the early advanced detectors' configurations (with sensitivities down to around 40 Hz) and ˜70 for sensitivities down to around 20 Hz. This speedup will increase to about 150 as the detectors improve their low-frequency limit to 10 Hz, reducing to hours analyses which could otherwise take months to complete. Although these results focus on interferometric gravitational wave detectors, the techniques are broadly applicable to any experiment where fast Bayesian analysis is desirable.
Towards beating the curse of dimensionality for gravitational waves using reduced basis
NASA Astrophysics Data System (ADS)
Field, Scott E.; Galley, Chad R.; Ochsner, Evan
2012-10-01
Using the reduced basis approach, we efficiently compress and accurately represent the space of waveforms for nonprecessing binary black hole inspirals, which constitutes a four-dimensional parameter space (two masses, two spin magnitudes). Compared to the nonspinning case, we find that only a marginal increase in the (already relatively small) number of reduced basis elements is required to represent any nonprecessing waveform to nearly numerical round-off precision. Most parameters selected by the algorithm are near the boundary of the parameter space, leaving the bulk of its volume sparse. Our results suggest that the full eight-dimensional space (two masses, two spin magnitudes, four spin orientation angles on the unit sphere) may be highly compressible and represented with very high accuracy by a remarkably small number of waveforms, thus providing some hope that the number of numerical relativity simulations of binary black hole coalescences needed to represent the entire space of configurations is not intractable. Finally, we find that the distribution of selected parameters is robust to different choices of seed values starting the algorithm, a property which should be useful for indicating parameters for numerical relativity simulations of binary black holes. In particular, we find that the mass ratios m1/m2 of nonspinning binaries selected by the algorithm are mostly in the interval [1,3] and that the median of the distribution follows a power-law behavior ˜(m1/m2)-5.25.
Revealing Optical Properties of Reduced-Dimensionality Materials at Relevant Length Scales.
Ogletree, D Frank; Schuck, P James; Weber-Bargioni, Alexander F; Borys, Nicholas J; Aloni, Shaul; Bao, Wei; Barja, Sara; Lee, Jiye; Melli, Mauro; Munechika, Keiko; Whitelam, Stephan; Wickenburg, Sebastian
2015-10-14
Reduced-dimensionality materials for photonic and optoelectronic applications including energy conversion, solid-state lighting, sensing, and information technology are undergoing rapid development. The search for novel materials based on reduced-dimensionality is driven by new physics. Understanding and optimizing material properties requires characterization at the relevant length scale, which is often below the diffraction limit. Three important material systems are chosen for review here, all of which are under investigation at the Molecular Foundry, to illustrate the current state of the art in nanoscale optical characterization: 2D semiconducting transition metal dichalcogenides; 1D semiconducting nanowires; and energy-transfer in assemblies of 0D semiconducting nanocrystals. For each system, the key optical properties, the principal experimental techniques, and important recent results are discussed. Applications and new developments in near-field optical microscopy and spectroscopy, scanning probe microscopy, and cathodoluminescence in the electron microscope are given detailed attention. Work done at the Molecular Foundry is placed in context within the fields under review. A discussion of emerging opportunities and directions for the future closes the review. PMID:26332202
A Five Dimensional Model for Educating the Net Generation
ERIC Educational Resources Information Center
Beyers, Ronald Noel
2009-01-01
This paper proposes a multi-dimensional concept model of an ICT enabled classroom to highlight potential similarities and differences between where teachers perceive themselves relative to their learners. Some teachers and learners may be at the two dimensional text-book level, while others are operating in at a globalization level. Being armed…
Bacteriophage Infection of Model Metal Reducing Bacteria
NASA Astrophysics Data System (ADS)
Weber, K. A.; Bender, K. S.; Gandhi, K.; Coates, J. D.
2008-12-01
filtered through a 0.22 μ m sterile nylon filter, stained with phosphotungstic acid (PTA), and examined using transmission electron microscopy (TEM). TEM revealed the presence of viral like particles in the culture exposed to mytomycin C. Together these results suggest an active infection with a lysogenic bacteriophage in the model metal reducing bacteria, Geobacter spp., which could affect metabolic physiology and subsequently metal reduction in environmental systems.
NASA Astrophysics Data System (ADS)
Vu, H. X.; Bezzerides, B.; Dubois, D. F.
1998-11-01
A fully kinetic, reduced-description particle-in-cell (RPIC) model is presented in which deviations from quasineutrality, electron and ion kinetic effects, and nonlinear interactions between low-frequency and high-frequency parametric instabilities are modeled correctly. The model is based on a reduced description where the electromagnetic field is represented by three separate temporal WKB envelopes in order to model low-frequency and high-frequency parametric instabilities. Because temporal WKB approximations are invoked, the simulation can be performed on the electron time scale instead of the time scale of the light waves. The electrons and ions are represented by discrete finite-size particles, permitting electron and ion kinetic effects to be modeled properly. The Poisson equation is utilized to ensure that space-charge effects are included. Although RPIC is fully three dimensional, it has been implemented in only two dimensions on a CRAY-T3D with 512 processors and on the Accelerated Strategic Computing Initiative (ASCI) parallel computer at Los Alamos National Laboratory, and the resulting simulation code has been named ASPEN. Given the current computers available to the authors, one and two dimensional simulations are feasible to, and have been, performed. Three dimensional simulations are much more expensive, and are not feasible at this time. However, with rapidly advancing computer technologies, three dimensional simulations may be feasible in the near future. We believe this code is the first PIC code capable of simulating the interaction between low-frequency and high-frequency parametric instabilites in multiple dimensions. Test simulations of stimulated Raman scattering (SRS), stimulated Brillouin scattering (SBS), and Langmuir decay instability (LDI), are presented.
NASA Astrophysics Data System (ADS)
Chen, Peng; Quarteroni, Alfio
2015-10-01
In this work we develop an adaptive and reduced computational algorithm based on dimension-adaptive sparse grid approximation and reduced basis methods for solving high-dimensional uncertainty quantification (UQ) problems. In order to tackle the computational challenge of "curse of dimensionality" commonly faced by these problems, we employ a dimension-adaptive tensor-product algorithm [16] and propose a verified version to enable effective removal of the stagnation phenomenon besides automatically detecting the importance and interaction of different dimensions. To reduce the heavy computational cost of UQ problems modelled by partial differential equations (PDE), we adopt a weighted reduced basis method [7] and develop an adaptive greedy algorithm in combination with the previous verified algorithm for efficient construction of an accurate reduced basis approximation. The efficiency and accuracy of the proposed algorithm are demonstrated by several numerical experiments.
Dynamic colloidal assembly pathways via low dimensional models.
Yang, Yuguang; Thyagarajan, Raghuram; Ford, David M; Bevan, Michael A
2016-05-28
Here we construct a low-dimensional Smoluchowski model for electric field mediated colloidal crystallization using Brownian dynamic simulations, which were previously matched to experiments. Diffusion mapping is used to infer dimensionality and confirm the use of two order parameters, one for degree of condensation and one for global crystallinity. Free energy and diffusivity landscapes are obtained as the coefficients of a low-dimensional Smoluchowski equation to capture the thermodynamics and kinetics of microstructure evolution. The resulting low-dimensional model quantitatively captures the dynamics of different assembly pathways between fluid, polycrystal, and single crystals states, in agreement with the full N-dimensional data as characterized by first passage time distributions. Numerical solution of the low-dimensional Smoluchowski equation reveals statistical properties of the dynamic evolution of states vs. applied field amplitude and system size. The low-dimensional Smoluchowski equation and associated landscapes calculated here can serve as models for predictive control of electric field mediated assembly of colloidal ensembles into two-dimensional crystalline objects. PMID:27250328
Dynamic colloidal assembly pathways via low dimensional models
NASA Astrophysics Data System (ADS)
Yang, Yuguang; Thyagarajan, Raghuram; Ford, David M.; Bevan, Michael A.
2016-05-01
Here we construct a low-dimensional Smoluchowski model for electric field mediated colloidal crystallization using Brownian dynamic simulations, which were previously matched to experiments. Diffusion mapping is used to infer dimensionality and confirm the use of two order parameters, one for degree of condensation and one for global crystallinity. Free energy and diffusivity landscapes are obtained as the coefficients of a low-dimensional Smoluchowski equation to capture the thermodynamics and kinetics of microstructure evolution. The resulting low-dimensional model quantitatively captures the dynamics of different assembly pathways between fluid, polycrystal, and single crystals states, in agreement with the full N-dimensional data as characterized by first passage time distributions. Numerical solution of the low-dimensional Smoluchowski equation reveals statistical properties of the dynamic evolution of states vs. applied field amplitude and system size. The low-dimensional Smoluchowski equation and associated landscapes calculated here can serve as models for predictive control of electric field mediated assembly of colloidal ensembles into two-dimensional crystalline objects.
Gargano, Andrea F G; Duffin, Mike; Navarro, Pablo; Schoenmakers, Peter J
2016-02-01
Online comprehensive two-dimensional liquid chromatography (LC × LC) offers ways to achieve high-performance separations in terms of peak capacity (exceeding 1000) and additional selectivity to realize applications that cannot be addressed with one-dimensional chromatography (1D-LC). However, the greater resolving power of LC × LC comes at the price of higher dilutions (thus, reduced sensitivity) and, often, long analysis times (>100 min). The need to preserve the separation attained in the first dimension ((1)D) causes greater dilution for LC × LC, in comparison with 1D-LC, and long analysis times to sample the (1)D with an adequate number of second dimension separations. A way to significantly reduce these downsides is to introduce a concentration step between the two chromatographic dimensions. In this work we present a possible active-modulation approach to concentrate the fractions of (1)D effluent. A typical LC × LC system is used with the addition of a dilution flow to decrease the strength of the (1)D effluent and a modulation unit that uses trap columns. The potential of this approach is demonstrated for the separation of tristyrylphenol ethoxylate phosphate surfactants, using a combination of hydrophilic interaction and reversed-phase liquid chromatography. The modified LC × LC system enabled us to halve the analysis time necessary to obtain a similar degree of separation efficiency with respect to UHPLC based LC × LC and of 5 times with respect to HPLC instrumentation (40 compared with 80 and 200 min, respectively), while at the same time reducing dilution (DF of 142, 299, and 1529, respectively) and solvent consumption per analysis (78, 120, and 800 mL, respectively). PMID:26709410
Model of a Negatively Curved Two-Dimensional Space.
ERIC Educational Resources Information Center
Eckroth, Charles A.
1995-01-01
Describes the construction of models of two-dimensional surfaces with negative curvature that are used to illustrate differences in the triangle sum rule for the various Big Bang Theories of the universe. (JRH)
Two-Dimensional Intercomparison of Stratospheric Models
NASA Technical Reports Server (NTRS)
Jackman, Charles H. (Editor); Seals, Robert K., Jr. (Editor); Prather, Michael J. (Editor)
1989-01-01
A detailed record is provided for the examination of fundamental differences in photochemistry and transport among atmospheric models. The results of 16 different modeling groups are presented for several model experiments.
Spectral analysis of two-dimensional Bose-Hubbard models
NASA Astrophysics Data System (ADS)
Fischer, David; Hoffmann, Darius; Wimberger, Sandro
2016-04-01
One-dimensional Bose-Hubbard models are well known to obey a transition from regular to quantum-chaotic spectral statistics. We are extending this concept to relatively simple two-dimensional many-body models. Also in two dimensions a transition from regular to chaotic spectral statistics is found and discussed. In particular, we analyze the dependence of the spectral properties on the bond number of the two-dimensional lattices and the applied boundary conditions. For maximal connectivity, the systems behave most regularly in agreement with the applicability of mean-field approaches in the limit of many nearest-neighbor couplings at each site.
Stochastic reduced order models for inverse problems under uncertainty
Warner, James E.; Aquino, Wilkins; Grigoriu, Mircea D.
2014-01-01
This work presents a novel methodology for solving inverse problems under uncertainty using stochastic reduced order models (SROMs). Given statistical information about an observed state variable in a system, unknown parameters are estimated probabilistically through the solution of a model-constrained, stochastic optimization problem. The point of departure and crux of the proposed framework is the representation of a random quantity using a SROM - a low dimensional, discrete approximation to a continuous random element that permits e cient and non-intrusive stochastic computations. Characterizing the uncertainties with SROMs transforms the stochastic optimization problem into a deterministic one. The non-intrusive nature of SROMs facilitates e cient gradient computations for random vector unknowns and relies entirely on calls to existing deterministic solvers. Furthermore, the method is naturally extended to handle multiple sources of uncertainty in cases where state variable data, system parameters, and boundary conditions are all considered random. The new and widely-applicable SROM framework is formulated for a general stochastic optimization problem in terms of an abstract objective function and constraining model. For demonstration purposes, however, we study its performance in the specific case of inverse identification of random material parameters in elastodynamics. We demonstrate the ability to efficiently recover random shear moduli given material displacement statistics as input data. We also show that the approach remains effective for the case where the loading in the problem is random as well. PMID:25558115
Application of N-Doped Three-Dimensional Reduced Graphene Oxide Aerogel to Thin Film Loudspeaker.
Kim, Choong Sun; Lee, Kyung Eun; Lee, Jung-Min; Kim, Sang Ouk; Cho, Byung Jin; Choi, Jung-Woo
2016-08-31
We built a thermoacoustic loudspeaker employing N-doped three-dimensional reduced graphene oxide aerogel (N-rGOA) based on a simple template-free fabrication method. A two-step fabrication process, which includes freeze-drying and reduction/doping, was used to realize a three-dimensional, freestanding, and porous graphene-based loudspeaker, whose macroscopic structure can be easily modulated. The simplified fabrication process also allows the control of structural properties of the N-rGOAs, including density and area. Taking advantage of the facile fabrication process, we fabricated and analyzed thermoacoustic loudspeakers with different structural properties. The anlayses showed that a N-rGOA with lower density and larger area can produce a higher sound pressure level (SPL). Furthermore, the resistance of the proposed loudspeaker can be easily controlled through heteroatom doping, thereby helping to generate higher SPL per unit driving voltage. Our success in constructing an array of optimized N-rGOAs able to withstand input power as high as 40 W demonstrates that a practical thermoacoustic loudspeaker can be fabricated using the proposed mass-producible solution-based process. PMID:27532328
NASA Astrophysics Data System (ADS)
Mandrà, Salvatore; Guerreschi, Gian Giacomo; Aspuru-Guzik, Alán
2015-12-01
Adiabatic quantum optimization is a procedure to solve a vast class of optimization problems by slowly changing the Hamiltonian of a quantum system. The evolution time necessary for the algorithm to be successful scales inversely with the minimum energy gap encountered during the dynamics. Unfortunately, the direct calculation of the gap is strongly limited by the exponential growth in the dimensionality of the Hilbert space associated to the quantum system. Although many special-purpose methods have been devised to reduce the effective dimensionality, they are strongly limited to particular classes of problems with evident symmetries. Moreover, little is known about the computational power of adiabatic quantum optimizers in real-world conditions. Here we propose and implement a general purposes reduction method that does not rely on any explicit symmetry and which requires, under certain general conditions, only a polynomial amount of classical resources. Thanks to this method, we are able to analyze the performance of "nonideal" quantum adiabatic optimizers to solve the well-known Grover problem, namely the search of target entries in an unsorted database, in the presence of discrete local defects. In this case, we show that adiabatic quantum optimization, even if affected by random noise, is still potentially faster than any classical algorithm.
Three Dimensional Vapor Intrusion Modeling: Model Validation and Uncertainty Analysis
NASA Astrophysics Data System (ADS)
Akbariyeh, S.; Patterson, B.; Rakoczy, A.; Li, Y.
2013-12-01
Volatile organic chemicals (VOCs), such as chlorinated solvents and petroleum hydrocarbons, are prevalent groundwater contaminants due to their improper disposal and accidental spillage. In addition to contaminating groundwater, VOCs may partition into the overlying vadose zone and enter buildings through gaps and cracks in foundation slabs or basement walls, a process termed vapor intrusion. Vapor intrusion of VOCs has been recognized as a detrimental source for human exposures to potential carcinogenic or toxic compounds. The simulation of vapor intrusion from a subsurface source has been the focus of many studies to better understand the process and guide field investigation. While multiple analytical and numerical models were developed to simulate the vapor intrusion process, detailed validation of these models against well controlled experiments is still lacking, due to the complexity and uncertainties associated with site characterization and soil gas flux and indoor air concentration measurement. In this work, we present an effort to validate a three-dimensional vapor intrusion model based on a well-controlled experimental quantification of the vapor intrusion pathways into a slab-on-ground building under varying environmental conditions. Finally, a probabilistic approach based on Monte Carlo simulations is implemented to determine the probability distribution of indoor air concentration based on the most uncertain input parameters.
NASA Astrophysics Data System (ADS)
Arevalillo-Herráez, Miguel; Gdeisat, Munther; Lilley, Francis; Burton, David R.
2016-07-01
In this paper, we present a novel algorithm to reduce the number of phase wraps in two dimensional signals in fringe projection profilometry. The technique operates in the spatial domain, and achieves a significant computational saving with regard to existing methods based on frequency shifting. The method works by estimating the modes of the first differences distribution in each axial direction. These are used to generate a tilted plane, which is subtracted from the entire phase map. Finally, the result is re-wrapped to obtain a phase map with fewer wraps. The method may be able to completely eliminate the phase wraps in many cases, or can achieve a significant phase wrap reduction that helps the subsequent unwrapping of the signal. The algorithm has been exhaustively tested across a large number of real and simulated signals, showing similar results compared to approaches operating in the frequency domain, but at significantly lower running times.
Reduced dimensionality 3D HNCAN for unambiguous HN, CA and N assignment in proteins
NASA Astrophysics Data System (ADS)
Rout, Manoj Kumar; Mishra, Pushpa; Atreya, Hanudatta S.; Hosur, Ramakrishna V.
2012-03-01
We present here an improvisation of HNN (Panchal, Bhavesh et al., 2001) called RD 3D HNCAN for backbone (HN, CA and 15N) assignment in both folded and unfolded proteins. This is a reduced dimensionality experiment which employs CA chemical shifts to improve dispersion. Distinct positive and negative peak patterns of various triplet segments along the polypeptide chain observed in HNN are retained and these provide start and check points for the sequential walk. Because of co-incrementing of CA and 15N, peaks along one of the dimensions appear at sums and differences of the CA and 15N chemical shifts. This changes the backbone assignment protocol slightly and we present this in explicit detail. The performance of the experiment has been demonstrated using Ubiquitin and Plasmodium falciparum P2 proteins. The experiment is particularly valuable when two neighboring amino acid residues have nearly identical backbone 15N chemical shifts.
A numerical method for reducing the random noise in a two-dimensional waveform
Levy, A.J.
1991-01-23
This invention is comprised of a method for reducing random noise in a two-dimensional waveform having an irregular curvature includes the steps of selecting a plurality of points initially positioned at preselected locations on the waveform. For each point selected, the straight line is found which connects it to the midpoint between its neighboring points. A new location for the point is calculated to lie on the straight line a fraction of the distance between the initial location of the point and the midpoint. This process is repeated for each point positioned on the waveform. After a single iteration of the method is completed, the entire process is repeated a predetermined number of times to identify final calculated locations for the plurality of points selected. The final calculated locations of the points are then connected to form a relatively random noise-free waveform having a substantially smooth curvature.
Three-dimensional computer modeling of hydrogen injection and combustion
Johnson, N.L.; Amsden, A.A.; Naber, J.D.; Siebers, D.L.
1995-02-01
The hydrodynamics of hydrogen gas injection into a fixed-volume combustion chamber is analyzed and simulated using KIVA-3, a three-dimensional, reactive flow computer code. Comparisons of the simulation results are made to data obtained at the Combustion Research Facility at Sandia National Laboratory-California (SNL-CA). Simulation of the gas injection problem is found to be of comparable difficulty as the liquid fuel injection in diesel engines. The primary challenge is the large change of length scale from the flow of gas in the orifice to the penetration in the combustion chamber. In the current experiments, the change of length scale is about 4,000. A reduction of the full problem is developed that reduces the change in length scale in the simulation to about 400, with a comparable improvement in computational times. Comparisons of the simulation to the experimental data shows good agreement in the penetration history and pressure rise in the combustion chamber. At late times the comparison is sensitive to the method of determination of the penetration in the simulations. In a comparison of the combustion modeling of methane and hydrogen, hydrogen combustion is more difficult to model, and currently available kinetic models fail to predict the observed autoignition delay at these conditions.
NASA Astrophysics Data System (ADS)
Amandeep; Kedawat, Garima; Kumar, Pawan; Anshul, Avaneesh; Deshmukh, Abhay D.; Singh, Om Pal; Gupta, R. K.; Amritphale, S. S.; Gupta, Govind; Singh, V. N.; Gupta, Bipin Kumar
2015-07-01
Herein, we report the luminomagnetic bifunctional properties of two-dimensional (2D) Mn2+ bonded graphene oxide (GO)/reduced graphene oxide (RGO) nanosheets synthesized using a facile route of oxidation followed by a solvothermal reduction method. Photoluminescence (PL) studies (excited by different wavelengths) revealed that the resonant energy transfer between Mn2+ and sp3/sp2 clusters of GO/RGO is responsible for the enhancement of emissions. Moreover, pH-sensitive PL behaviors have also been investigated in detail. The ferromagnetic behavior is believed to arise due to defects in Mn2+ bonded GO composites. Thus, present reduction method provides a direct route to tune and enhance the optical properties of GO and RGO nanosheets bonded with Mn2+ ions, which creates an opportunity for various technological applications.Herein, we report the luminomagnetic bifunctional properties of two-dimensional (2D) Mn2+ bonded graphene oxide (GO)/reduced graphene oxide (RGO) nanosheets synthesized using a facile route of oxidation followed by a solvothermal reduction method. Photoluminescence (PL) studies (excited by different wavelengths) revealed that the resonant energy transfer between Mn2+ and sp3/sp2 clusters of GO/RGO is responsible for the enhancement of emissions. Moreover, pH-sensitive PL behaviors have also been investigated in detail. The ferromagnetic behavior is believed to arise due to defects in Mn2+ bonded GO composites. Thus, present reduction method provides a direct route to tune and enhance the optical properties of GO and RGO nanosheets bonded with Mn2+ ions, which creates an opportunity for various technological applications. Electronic supplementary information (ESI) available. See DOI: 10.1039/c5nr01095k
Recent Progress in GW-based Methods for Excited-State Calculations of Reduced Dimensional Systems
NASA Astrophysics Data System (ADS)
da Jornada, Felipe H.
2015-03-01
Ab initio calculations of excited-state phenomena within the GW and GW-Bethe-Salpeter equation (GW-BSE) approaches allow one to accurately study the electronic and optical properties of various materials, including systems with reduced dimensionality. However, several challenges arise when dealing with complicated nanostructures where the electronic screening is strongly spatially and directionally dependent. In this talk, we discuss some recent developments to address these issues. First, we turn to the slow convergence of quasiparticle energies and exciton binding energies with respect to k-point sampling. This is very effectively dealt with using a new hybrid sampling scheme, which results in savings of several orders of magnitude in computation time. A new ab initio method is also developed to incorporate substrate screening into GW and GW-BSE calculations. These two methods have been applied to mono- and few-layer MoSe2, and yielded strong environmental dependent behaviors in good agreement with experiment. Other issues that arise in confined systems and materials with reduced dimensionality, such as the effect of the Tamm-Dancoff approximation to GW-BSE, and the calculation of non-radiative exciton lifetime, are also addressed. These developments have been efficiently implemented and successfully applied to real systems in an ab initio framework using the BerkeleyGW package. I would like to acknowledge collaborations with Diana Y. Qiu, Steven G. Louie, Meiyue Shao, Chao Yang, and the experimental groups of M. Crommie and F. Wang. This work was supported by Department of Energy under Contract No. DE-AC02-05CH11231 and by National Science Foundation under Grant No. DMR10-1006184.
The Long Decay Model of One-Dimensional Projectile Motion
ERIC Educational Resources Information Center
Lattery, Mark Joseph
2008-01-01
This article introduces a research study on student model formation and development in introductory mechanics. As a point of entry, I present a detailed analysis of the Long Decay Model of one-dimensional projectile motion. This model has been articulated by Galileo ("in De Motu") and by contemporary students. Implications for instruction are…
One-Dimensional Ising Model with "k"-Spin Interactions
ERIC Educational Resources Information Center
Fan, Yale
2011-01-01
We examine a generalization of the one-dimensional Ising model involving interactions among neighbourhoods of "k" adjacent spins. The model is solved by exploiting a connection to an interesting computational problem that we call ""k"-SAT on a ring", and is shown to be equivalent to the nearest-neighbour Ising model in the absence of an external…
Acceleration techniques for reduced-order models based on proper orthogonal decomposition
Cizmas, P.; Richardson, B.; Brenner, T.; O'Brien, T.; Breault, R.
2008-01-01
This paper presents several acceleration techniques for reduced-order models based on the proper orthogonal decomposition (POD) method. The techniques proposed herein are: (i) an algorithm for splitting the database of snapshots generated by the full-order model; (ii) a method for solving quasi-symmetrical matrices; (iii) a strategy for reducing the frequency of the projection. The acceleration techniques were applied to a POD-based reduced-order model of the twophase flows in fluidized beds. This reduced-order model was developed using numerical results from a full-order computational fluid dynamics model of a two-dimensional fluidized bed. Using these acceleration techniques the computational time of the POD model was two orders of magnitude shorter than the full-order model.
Existence of global weak solution for a reduced gravity two and a half layer model
Guo, Zhenhua Li, Zilai Yao, Lei
2013-12-15
We investigate the existence of global weak solution to a reduced gravity two and a half layer model in one-dimensional bounded spatial domain or periodic domain. Also, we show that any possible vacuum state has to vanish within finite time, then the weak solution becomes a unique strong one.
Wilms, D; Deutschländer, S; Siems, U; Franzrahe, K; Henseler, P; Keim, P; Schwierz, N; Virnau, P; Binder, K; Maret, G; Nielaba, P
2012-11-21
In this work, we focus on low-dimensional colloidal model systems, via simulation studies and also some complementary experiments, in order to elucidate the interplay between phase behavior, geometric structures and transport properties. In particular, we try to investigate the (nonlinear!) response of these very soft colloidal systems to various perturbations: uniform and uniaxial pressure, laser fields, shear due to moving boundaries and randomly quenched disorder. We study ordering phenomena on surfaces or in monolayers by Monte Carlo computer simulations of binary hard-disk mixtures, the influence of a substrate being modeled by an external potential. Weak external fields allow a controlled tuning of the miscibility of the mixture. We discuss the laser induced de-mixing for the three different possible couplings to the external potential. The structural behavior of hard spheres interacting with repulsive screened Coulomb or dipolar interaction in 2D and 3D narrow constrictions is investigated using Brownian dynamics simulations. Due to misfits between multiples of the lattice parameter and the channel widths, a variety of ordered and disordered lattice structures have been observed. The resulting local lattice structures and defect probabilities are studied for various cross sections. The influence of a self-organized order within the system is reflected in the velocity of the particles and their diffusive behavior. Additionally, in an experimental system of dipolar colloidal particles confined by gravity on a solid substrate we investigate the effect of pinning on the dynamics of a two-dimensional colloidal liquid. This work contains sections reviewing previous work by the authors as well as new, unpublished results. Among the latter are detailed studies of the phase boundaries of the de-mixing regime in binary systems in external light fields, configurations for shear induced effects at structured walls, studies on the effect of confinement on the structures
Global Well-Posedness of an Inviscid Three-Dimensional Pseudo-Hasegawa-Mima Model
NASA Astrophysics Data System (ADS)
Cao, Chongsheng; Farhat, Aseel; Titi, Edriss S.
2013-04-01
The three-dimensional inviscid Hasegawa-Mima model is one of the fundamental models that describe plasma turbulence. The model also appears as a simplified reduced Rayleigh-Bénard convection model. The mathematical analysis of the Hasegawa-Mima equation is challenging due to the absence of any smoothing viscous terms, as well as to the presence of an analogue of the vortex stretching terms. In this paper, we introduce and study a model which is inspired by the inviscid Hasegawa-Mima model, which we call a pseudo-Hasegawa-Mima model. The introduced model is easier to investigate analytically than the original inviscid Hasegawa-Mima model, as it has a nicer mathematical structure. The resemblance between this model and the Euler equations of inviscid incompressible fluids inspired us to adapt the techniques and ideas introduced for the two-dimensional and the three-dimensional Euler equations to prove the global existence and uniqueness of solutions for our model. This is in addition to proving and implementing a new technical logarithmic inequality, generalizing the Brezis-Gallouet and the Brezis-Wainger inequalities. Moreover, we prove the continuous dependence on initial data of solutions for the pseudo-Hasegawa-Mima model. These are the first results on existence and uniqueness of solutions for a model that is related to the three-dimensional inviscid Hasegawa-Mima equations.
Nonminimal universal extra dimensional model confronts Bs→μ+μ-
NASA Astrophysics Data System (ADS)
Datta, Anindya; Shaw, Avirup
2016-03-01
The addition of boundary localized kinetic and Yukawa terms to the action of a five-dimensional Standard Model would nontrivially modify the Kaluza-Klein spectra and some of the interactions among the Kaluza-Klein excitations compared to the minimal version of this model, in which these boundary terms are not present. In the minimal version of this framework, known as the universal extra dimensional model, special assumptions are made about these unknown, beyond the cutoff contributions to restrict the number of unknown parameters of the theory to be minimum. We estimate the contribution of Kaluza-Klein modes to the branching ratios of Bs (d )→μ+μ- in the framework of the nonminimal universal extra dimensional model, at one-loop level. The results have been compared to the experimental data to constrain the parameters of this model. From the measured decay branching ratio of Bs→μ+μ- (depending on the values of boundary localized parameters), the lower limit on R-1 can be as high as 800 GeV. We have briefly reviewed the bounds on nonminimal universal extra dimensional parameter space coming from electroweak precision observables. The present analysis (Bs→μ+μ-) has ruled out new regions of parameter space in comparison to the analysis of electroweak data. We have revisited the bound on R-1 in the universal extra dimensional model, which came out to be 454 GeV. This limit on R-1 in the universal extra dimensional framework is not as competitive as the limits derived from the consideration of relic density or Standard Model Higgs boson production and decay to W+W-. Unfortunately, the Bd→μ+μ- decay branching ratio would not set any significant limit on R-1 in a minimal or nonminimal universal extra dimensional model.
Assessing and reducing hydrogeologic model uncertainty
Technology Transfer Automated Retrieval System (TEKTRAN)
NRC is sponsoring research that couples model abstraction techniques with model uncertainty assessment methods. Insights and information from this program will be useful in decision making by NRC staff, licensees and stakeholders in their assessment of subsurface radionuclide transport. All analytic...
Three-dimensional hydrodynamic modeling of a bubbling fluidized bed
Gamwo, I.K.; Soong, Y.; Gidaspow, D.; Lyczkowski, R.W.
1995-12-31
A well-posed three-dimensional model for bed dynamics was developed starting from an ill-posed model. The new model has predicted a roughly-spheroidal bubble shape and computed porosity distributions consistent with experimental observations with no disturbing ``fountain`` as predicted by the earlier model. The model can be applied to a variety of gas-solids flows of practical interest such as fluidization, pneumatic conveying, and two-phase jets, as well as liquid-solids flows.
The problem of dimensional instability in airfoil models for cryogenic wind tunnels
NASA Technical Reports Server (NTRS)
Wigley, D. A.
1982-01-01
The problem of dimensional instability in airfoil models for cryogenic wind tunnels is discussed in terms of the various mechanisms that can be responsible. The interrelationship between metallurgical structure and possible dimensional instability in cryogenic usage is discussed for those steel alloys of most interest for wind tunnel model construction at this time. Other basic mechanisms responsible for setting up residual stress systems are discussed, together with ways in which their magnitude may be reduced by various elevated or low temperature thermal cycles. A standard specimen configuration is proposed for use in experimental investigations into the effects of machining, heat treatment, and other variables that influence the dimensional stability of the materials of interest. A brief classification of various materials in terms of their metallurgical structure and susceptability to dimensional instability is presented.
Numerical modeling of two-dimensional confined flows
NASA Technical Reports Server (NTRS)
Greywall, M. S.
1979-01-01
A numerical model of two-dimensional confined flows is presented. The flow in the duct is partitioned into finite streams. The difference equations are then obtained by applying conservation principles directly to the individual streams. A listing of a computer code based on this approach in FORTRAN 4 language is presented. The code computes two dimensional compressible turbulent flows in ducts when the duct area along the flow is specified and the pressure gradient is unknown.
A two-dimensional dam-break flood plain model
Hromadka, T.V., II; Berenbrock, C.E.; Freckleton, J.R.; Guymon, G.L.
1985-01-01
A simple two-dimensional dam-break model is developed for flood plain study purposes. Both a finite difference grid and an irregular triangle element integrated finite difference formulation are presented. The governing flow equations are approximately solved as a diffusion model coupled to the equation of continuity. Application of the model to a hypothetical dam-break study indicates that the approach can be used to predict a two-dimensional dam-break flood plain over a broad, flat plain more accurately than a one-dimensional model, especially when the flow can break-out of the main channel and then return to the channel at other downstream reaches. ?? 1985.
Lim, Hojun; Owen, Steven J.; Abdeljawad, Fadi F.; Hanks, Byron; Battaile, Corbett Chandler
2015-09-01
In order to better incorporate microstructures in continuum scale models, we use a novel finite element (FE) meshing technique to generate three-dimensional polycrystalline aggregates from a phase field grain growth model of grain microstructures. The proposed meshing technique creates hexahedral FE meshes that capture smooth interfaces between adjacent grains. Three dimensional realizations of grain microstructures from the phase field model are used in crystal plasticity-finite element (CP-FE) simulations of polycrystalline a -iron. We show that the interface conformal meshes significantly reduce artificial stress localizations in voxelated meshes that exhibit the so-called "wedding cake" interfaces. This framework provides a direct link between two mesoscale models - phase field and crystal plasticity - and for the first time allows mechanics simulations of polycrystalline materials using three-dimensional hexahedral finite element meshes with realistic topological features.
One-dimensional hydrodynamic model generating a turbulent cascade
NASA Astrophysics Data System (ADS)
Matsumoto, Takeshi; Sakajo, Takashi
2016-05-01
As a minimal mathematical model generating cascade analogous to that of the Navier-Stokes turbulence in the inertial range, we propose a one-dimensional partial-differential-equation model that conserves the integral of the squared vorticity analog (enstrophy) in the inviscid case. With a large-scale random forcing and small viscosity, we find numerically that the model exhibits the enstrophy cascade, the broad energy spectrum with a sizable correction to the dimensional-analysis prediction, peculiar intermittency, and self-similarity in the dynamical system structure.
Multi-Scale Multi-Dimensional Ion Battery Performance Model
Energy Science and Technology Software Center (ESTSC)
2007-05-07
The Multi-Scale Multi-Dimensional (MSMD) Lithium Ion Battery Model allows for computer prediction and engineering optimization of thermal, electrical, and electrochemical performance of lithium ion cells with realistic geometries. The model introduces separate simulation domains for different scale physics, achieving much higher computational efficiency compared to the single domain approach. It solves a one dimensional electrochemistry model in a micro sub-grid system, and captures the impacts of macro-scale battery design factors on cell performance and materialmore » usage by solving cell-level electron and heat transports in a macro grid system.« less
Bootstrapping Critical Ising Model on Three Dimensional Real Projective Space.
Nakayama, Yu
2016-04-01
Given conformal data on a flat Euclidean space, we use crosscap conformal bootstrap equations to numerically solve the Lee-Yang model as well as the critical Ising model on a three dimensional real projective space. We check the rapid convergence of our bootstrap program in two dimensions from the exact solutions available. Based on the comparison, we estimate that our systematic error on the numerically solved one-point functions of the critical Ising model on a three dimensional real projective space is less than 1%. Our method opens up a novel way to solve conformal field theories on nontrivial geometries. PMID:27104697
Bootstrapping Critical Ising Model on Three Dimensional Real Projective Space
NASA Astrophysics Data System (ADS)
Nakayama, Yu
2016-04-01
Given conformal data on a flat Euclidean space, we use crosscap conformal bootstrap equations to numerically solve the Lee-Yang model as well as the critical Ising model on a three dimensional real projective space. We check the rapid convergence of our bootstrap program in two dimensions from the exact solutions available. Based on the comparison, we estimate that our systematic error on the numerically solved one-point functions of the critical Ising model on a three dimensional real projective space is less than 1%. Our method opens up a novel way to solve conformal field theories on nontrivial geometries.
Low-dimensional supersymmetric lattice models
Bergner, G. Kaestner, T. Uhlmann, S. Wipf, A.
2008-04-15
We study and simulate N=2 supersymmetric Wess-Zumino models in one and two dimensions. For any choice of the lattice derivative, the theories can be made manifestly supersymmetric by adding appropriate improvement terms corresponding to discretizations of surface integrals. In one dimension, our simulations show that a model with the Wilson derivative and the Stratonovich prescription for this discretization leads to far better results at finite lattice spacing than other models with Wilson fermions considered in the literature. In particular, we check that fermionic and bosonic masses coincide and the unbroken Ward identities are fulfilled to high accuracy. Equally good results for the effective masses can be obtained in a model with the SLAC derivative (even without improvement terms). In two dimensions we introduce a non-standard Wilson term in such a way that the discretization errors of the kinetic terms are only of order O(a{sup 2}). Masses extracted from the corresponding manifestly supersymmetric model prove to approach their continuum values much quicker than those from a model containing the standard Wilson term. Again, a comparable enhancement can be achieved in a theory using the SLAC derivative.
Reduced Order ODE Model for Linear Contrails
NASA Astrophysics Data System (ADS)
Inamdar, A. R.; Lele, S. K.; Jacobson, M. Z.
2015-12-01
It is widely acknowledged that the large uncertainties in predictions of climate impact of linear contrails stem from inadequate parametrization of contrails in GCMs. But, the parameter space on which contrail dynamics and optical properties depend is very large and spanning it using high fidelity LES is prohibitively expensive. This study leverages the large dataset of LES done so far to understand the most important physical process that governs the evolution of contrails in different stages of its life and proposes a simple, low-cost and robust ODE model to capture the evolution of quantities of interest such as ice mass, vortex downwash and contrail cross-sectional dimensions. A direct consequence of modeling the contrail using parameters impacting the most important physical process is the reduction of the original parameter space to only those groupings of parameters that impact linear contrails independently. We are able to capture the most prominent features of the contrail at every stage of the life of the contrail - the induction of the jet exhaust by the trailing vortex pair, the vortex downwash and eventual destruction and the subsequent spreading of the contrail by ambient turbulence. A simplified version of GATOR-GCMOM - a GCM - is initialized using inputs from the new ODE model to test if the inclusion of the impact of the aforementioned parameter groups has significant persistent effects. Results from the GATOR-GCMOM box model calculations show which parameter groupings show persistent effects.
Large field inflation models from higher-dimensional gauge theories
NASA Astrophysics Data System (ADS)
Furuuchi, Kazuyuki; Koyama, Yoji
2015-02-01
Motivated by the recent detection of B-mode polarization of CMB by BICEP2 which is possibly of primordial origin, we study large field inflation models which can be obtained from higher-dimensional gauge theories. The constraints from CMB observations on the gauge theory parameters are given, and their naturalness are discussed. Among the models analyzed, Dante's Inferno model turns out to be the most preferred model in this framework.
Spatial and Temporal Low-Dimensional Models for Fluid Flow
NASA Technical Reports Server (NTRS)
Kalb, Virginia
2008-01-01
A document discusses work that obtains a low-dimensional model that captures both temporal and spatial flow by constructing spatial and temporal four-mode models for two classic flow problems. The models are based on the proper orthogonal decomposition at two reference Reynolds numbers. Model predictions are made at an intermediate Reynolds number and compared with direct numerical simulation results at the new Reynolds number.
Large field inflation models from higher-dimensional gauge theories
Furuuchi, Kazuyuki; Koyama, Yoji
2015-02-23
Motivated by the recent detection of B-mode polarization of CMB by BICEP2 which is possibly of primordial origin, we study large field inflation models which can be obtained from higher-dimensional gauge theories. The constraints from CMB observations on the gauge theory parameters are given, and their naturalness are discussed. Among the models analyzed, Dante’s Inferno model turns out to be the most preferred model in this framework.
Hybrid Reduced Order Modeling Algorithms for Reactor Physics Calculations
NASA Astrophysics Data System (ADS)
Bang, Youngsuk
Reduced order modeling (ROM) has been recognized as an indispensable approach when the engineering analysis requires many executions of high fidelity simulation codes. Examples of such engineering analyses in nuclear reactor core calculations, representing the focus of this dissertation, include the functionalization of the homogenized few-group cross-sections in terms of the various core conditions, e.g. burn-up, fuel enrichment, temperature, etc. This is done via assembly calculations which are executed many times to generate the required functionalization for use in the downstream core calculations. Other examples are sensitivity analysis used to determine important core attribute variations due to input parameter variations, and uncertainty quantification employed to estimate core attribute uncertainties originating from input parameter uncertainties. ROM constructs a surrogate model with quantifiable accuracy which can replace the original code for subsequent engineering analysis calculations. This is achieved by reducing the effective dimensionality of the input parameter, the state variable, or the output response spaces, by projection onto the so-called active subspaces. Confining the variations to the active subspace allows one to construct an ROM model of reduced complexity which can be solved more efficiently. This dissertation introduces a new algorithm to render reduction with the reduction errors bounded based on a user-defined error tolerance which represents the main challenge of existing ROM techniques. Bounding the error is the key to ensuring that the constructed ROM models are robust for all possible applications. Providing such error bounds represents one of the algorithmic contributions of this dissertation to the ROM state-of-the-art. Recognizing that ROM techniques have been developed to render reduction at different levels, e.g. the input parameter space, the state space, and the response space, this dissertation offers a set of novel
An Effective Parameter Screening Strategy for High Dimensional Watershed Models
NASA Astrophysics Data System (ADS)
Khare, Y. P.; Martinez, C. J.; Munoz-Carpena, R.
2014-12-01
Watershed simulation models can assess the impacts of natural and anthropogenic disturbances on natural systems. These models have become important tools for tackling a range of water resources problems through their implementation in the formulation and evaluation of Best Management Practices, Total Maximum Daily Loads, and Basin Management Action Plans. For accurate applications of watershed models they need to be thoroughly evaluated through global uncertainty and sensitivity analyses (UA/SA). However, due to the high dimensionality of these models such evaluation becomes extremely time- and resource-consuming. Parameter screening, the qualitative separation of important parameters, has been suggested as an essential step before applying rigorous evaluation techniques such as the Sobol' and Fourier Amplitude Sensitivity Test (FAST) methods in the UA/SA framework. The method of elementary effects (EE) (Morris, 1991) is one of the most widely used screening methodologies. Some of the common parameter sampling strategies for EE, e.g. Optimized Trajectories [OT] (Campolongo et al., 2007) and Modified Optimized Trajectories [MOT] (Ruano et al., 2012), suffer from inconsistencies in the generated parameter distributions, infeasible sample generation time, etc. In this work, we have formulated a new parameter sampling strategy - Sampling for Uniformity (SU) - for parameter screening which is based on the principles of the uniformity of the generated parameter distributions and the spread of the parameter sample. A rigorous multi-criteria evaluation (time, distribution, spread and screening efficiency) of OT, MOT, and SU indicated that SU is superior to other sampling strategies. Comparison of the EE-based parameter importance rankings with those of Sobol' helped to quantify the qualitativeness of the EE parameter screening approach, reinforcing the fact that one should use EE only to reduce the resource burden required by FAST/Sobol' analyses but not to replace it.
Gao, J M; Liu, Y; Li, W; Cui, Z Y; Dong, Y B; Lu, J; Xia, Z W; Yi, P; Yang, Q W
2014-04-01
Linear regularization has been applied to the HL-2A infrared imaging bolometer to reconstruct local plasma emission with one-dimensional (1D) and three-dimensional (3D) modeling under the assumption of toroidal symmetry. In the 3D modeling, a new method to calculate the detector point response function is introduced. This method can be adapted to an arbitrarily shaped pinhole. With the full 3D treatment of the detector geometry, up to 50% of the mean-squared error is reduced compared with the 1D modeling. This is attributed to the effects of finite detector size being taken into account in the 3D modeling. Meanwhile, the number of the bolometer pixels has been optimized to 20 × 20 by making a trade-off between the number of bolometer pixels and the sensitivity of the system. The plasma radiated power density distributions have been calculated as a demonstration using 1D modeling and 3D modeling, respectively. PMID:24784605
Multi-dimensional Indoor Location Information Model
NASA Astrophysics Data System (ADS)
Xiong, Q.; Zhu, Q.; Zlatanova, S.; Huang, L.; Zhou, Y.; Du, Z.
2013-11-01
Aiming at the increasing requirements of seamless indoor and outdoor navigation and location service, a Chinese standard of Multidimensional Indoor Location Information Model is being developed, which defines ontology of indoor location. The model is complementary to 3D concepts like CityGML and IndoorGML. The goal of the model is to provide an exchange GML-based format for location needed for indoor routing and navigation. An elaborated user requirements analysis and investigation of state-of-the-art technology in expressing indoor location at home and abroad was completed to identify the manner humans specify location. The ultimate goal is to provide an ontology that will allow absolute and relative specification of location such as "in room 321", "on the second floor", as well as, "two meters from the second window", "12 steps from the door".
Underwater striling engine design with modified one-dimensional model
NASA Astrophysics Data System (ADS)
Li, Daijin; Qin, Kan; Luo, Kai
2015-09-01
Stirling engines are regarded as an efficient and promising power system for underwater devices. Currently, many researches on one-dimensional model is used to evaluate thermodynamic performance of Stirling engine, but in which there are still some aspects which cannot be modeled with proper mathematical models such as mechanical loss or auxiliary power. In this paper, a four-cylinder double-acting Stirling engine for Unmanned Underwater Vehicles (UUVs) is discussed. And a one-dimensional model incorporated with empirical equations of mechanical loss and auxiliary power obtained from experiments is derived while referring to the Stirling engine computer model of National Aeronautics and Space Administration (NASA). The P-40 Stirling engine with sufficient testing results from NASA is utilized to validate the accuracy of this one-dimensional model. It shows that the maximum error of output power of theoretical analysis results is less than 18% over testing results, and the maximum error of input power is no more than 9%. Finally, a Stirling engine for UUVs is designed with Schmidt analysis method and the modified one-dimensional model, and the results indicate this designed engine is capable of showing desired output power.
Underwater striling engine design with modified one-dimensional model
NASA Astrophysics Data System (ADS)
Li, Daijin; Qin, Kan; Luo, Kai
2015-05-01
Stirling engines are regarded as an efficient and promising power system for underwater devices. Currently, many researches on one-dimensional model is used to evaluate thermodynamic performance of Stirling engine, but in which there are still some aspects which cannot be modeled with proper mathematical models such as mechanical loss or auxiliary power. In this paper, a four-cylinder double-acting Stirling engine for Unmanned Underwater Vehicles (UUVs) is discussed. And a one-dimensional model incorporated with empirical equations of mechanical loss and auxiliary power obtained from experiments is derived while referring to the Stirling engine computer model of National Aeronautics and Space Administration (NASA). The P-40 Stirling engine with sufficient testing results from NASA is utilized to validate the accuracy of this one-dimensional model. It shows that the maximum error of output power of theoretical analysis results is less than 18% over testing results, and the maximum error of input power is no more than 9%. Finally, a Stirling engine for UUVs is designed with Schmidt analysis method and the modified one-dimensional model, and the results indicate this designed engine is capable of showing desired output power.
Three-dimensional model for fusion processes
Olson, A.P.
1984-01-01
Active galactic nuclei (AGN) emit unusual spectra of radiation which is interpreted to signify extreme distance, extreme power, or both. The status of AGNs was recently reviewed by Balick and Heckman. It seems that the greatest conceptual difficulty with understanding AGNs is how to form a coherent phenomenological model of their properties. What drives the galactic engine. What and where are the mass-flows of fuel to this engine. Are there more than one engine. Do the engines have any symmetry properties. Is observed radiation isotropically emitted from the source. If it is polarized, what causes the polarization. Why is there a roughly spherical cloud of ionized gas about the center of our own galaxy, the Milky Way. The purpose of this paper is to discuss a new model, based on fusion processes which are not axisymmetric, uniform, isotropic, or even time-invariant. Then, the relationship to these questions will be developed. A unified model of fusion processes applicable to many astronomical phenomena will be proposed and discussed.
NASA Astrophysics Data System (ADS)
Tu, Chao-Chi; Lin, Lu-Yin; Xiao, Bing-Chang; Chen, Yu-Shiang
2016-07-01
Two-dimensional (2D) nanostructures with their high surface area and large in-plane conductivity have been regarded as promising materials for supercapacitors (SCs). Tungsten disulfide (WS2) is highly suitable for charge accumulation with its abundant active sites in the interspacing between the 2D structures and the intraspacing of each atomic layer, as well as on the tungsten centers with the charges generated by the Faradaic reactions. This study proposes the preparation of well-constructed WS2/reduced graphene oxide (RGO) nanosheets using a simple molten salt process as the electroactive material for SCs, which presents a high specific capacitance (CF) of 2508.07 F g-1 at the scan rate of 1 mV s-1, because of the synergic effect of WS2 with its large charge-accumulating sites on the 2D planes and RGO with its highly enhanced conductivity and improved connections in the WS2 networks. The excellent cycling stability of 98.6% retention after 5000 cycles charge/discharge process and the Coulombic efficiency close to 100% for the entire measurement are also achieved for the WS2/RGO-based SC electrode. The results suggest the potential for the combination of the 2D metal sulfide and carbon materials as the charge storage material to solve the energy problems and attain a sustainable society.
Dimensional reduction of symmetric gauge fields, Higgs models, and spontaneous compactification
Volobuev, I.P.; Kubyshin, Y.A. ); Mourao, J.M. ); Rudolph, G. )
1989-05-01
Questions relating to the dimensional reduction of symmetric gauge fields in multidimensional spaces of the form {ital E}={ital M}{times}{ital G}/{ital H} are discussed. For such fields a general geometrical method of dimensional reduction and a method for calculating the potentials of the scalar fields of the reduced theory in the case of symmetric spaces {ital G}/{ital H} are presented systematically. The connection between dimensional reduction of gauge fields and the theory of spontaneous compactification and the physical interpretation of the solutions of this theory is traced in detail. Much attention is devoted to the application of the method of dimensional reduction to fermion matter fields and to the construction by this method of realistic models of the interactions of elementary particles in Minkowski space.
Fermions in five-dimensional brane world models
NASA Astrophysics Data System (ADS)
Smolyakov, Mikhail N.
2016-06-01
In the present paper the fermion fields, living in the background of five-dimensional warped brane world models with compact extra dimension, are thoroughly examined. The Kaluza-Klein decomposition and isolation of the physical degrees of freedom is performed for those five-dimensional fermion field Lagrangians, which admit such a decomposition to be performed in a mathematically consistent way and provide a physically reasonable four-dimensional effective theory. It is also shown that for the majority of five-dimensional fermion field Lagrangians there are no (at least rather obvious) ways to perform the Kaluza-Klein decomposition consistently. Moreover, in these cases one may expect the appearance of various pathologies in the four-dimensional effective theory. Among the cases, for which the Kaluza-Klein decomposition can be performed in a mathematically consistent way, the case, which reproduces the Standard Model by the zero Kaluza-Klein modes most closely regardless of the size of the extra dimension, is examined in detail in the background of the Randall-Sundrum model.
Three-dimensional models. [For orbital celestial mechanics
Hunter, C. )
1990-06-01
The Schwarzschild (1979) approach to the analysis of three-dimensional galactic models is reviewed. An analysis of triaxial Staeckel models is discussed which shows that such models have a wide variety of possible distribution functions. The uniqueness that Schwarzschild first encountered in his discrete formulation of the problem of finding a three-integral distribution function for a triaxial density is real and not an artifact of the finite cell approximation. 27 refs.
On numerical modeling of one-dimensional geothermal histories
Haugerud, R.A.
1989-01-01
Numerical models of one-dimensional geothermal histories are one way of understanding the relations between tectonics and transient thermal structure in the crust. Such models can be powerful tools for interpreting geochronologic and thermobarometric data. A flexible program to calculate these models on a microcomputer is available and examples of its use are presented. Potential problems with this approach include the simplifying assumptions that are made, limitations of the numerical techniques, and the neglect of convective heat transfer. ?? 1989.
Programmers manual for a one-dimensional Lagrangian transport model
Schoellhamer, D.H.; Jobson, H.E.
1986-01-01
A one-dimensional Lagrangian transport model for simulating water-quality constituents such as temperature, dissolved oxygen , and suspended sediment in rivers is presented in this Programmers Manual. Lagrangian transport modeling techniques, the model 's subroutines, and the user-written decay-coefficient subroutine are discussed in detail. Appendices list the program codes. The Programmers Manual is intended for the model user who needs to modify code either to adapt the model to a particular need or to use reaction kinetics not provided with the model. (Author 's abstract)
Evaluation of one dimensional analytical models for vegetation canopies
NASA Technical Reports Server (NTRS)
Goel, Narendra S.; Kuusk, Andres
1992-01-01
The SAIL model for one-dimensional homogeneous vegetation canopies has been modified to include the specular reflectance and hot spot effects. This modified model and the Nilson-Kuusk model are evaluated by comparing the reflectances given by them against those given by a radiosity-based computer model, Diana, for a set of canopies, characterized by different leaf area index (LAI) and leaf angle distribution (LAD). It is shown that for homogeneous canopies, the analytical models are generally quite accurate in the visible region, but not in the infrared region. For architecturally realistic heterogeneous canopies of the type found in nature, these models fall short. These shortcomings are quantified.
Reduced quasilinear models for energetic particles interaction with Alfvenic eigenmodes
NASA Astrophysics Data System (ADS)
Ghantous, Katy
The Line Broadened Quasilinear (LBQ) and the 1.5D reduced models are able to predict the effect of Alfvenic eigenmodes' interaction with energetic particles in burning plasmas. This interaction can result in energetic-particle losses that can damage the first wall, deteriorate the plasma performance, and even prevent ignition. The 1.5D model assumes a broad spectrum of overlapping modes and, based on analytic expressions for the growth and damping rates, calculates the pressure profiles that the energetic particles relax to upon interacting with the modes. 1.5D is validated with DIII-D experiments and predicted neutron losses consistent with observation. The model is employed to predict alpha-particle fusion-product losses in a large-scale operational parameter-space for burning plasmas. The LBQ model captures the interaction both in the regime of isolated modes as well as in the conventional regime of overlapping modes. Rules were established that allow quasilinear equations to replicate the expected steady-state saturation levels of isolated modes. The fitting formula is improved and the model is benchmarked with a Vlasov code, BOT. The saturation levels are accurately predicted and the mode evolution is well-replicated in the case of steady-state evolution where the collisions are high enough that coherent structures do not form. When the collisionality is low, oscillatory behavior can occur. LBQ can also exhibit non-steady behavior, but the onset of oscillations occurs for much higher collisional rates in BOT than in LBQ. For certain parameters of low collisionality, hole-clump creation and frequency chirping can occur which are not captured by the LBQ model. Also, there are cases of non-steady evolution without chirping which is possible for LBQ to study. However the results are inconclusive since the periods and amplitudes of the oscillations in the mode evolution are not well-replicated. If multiple modes exist, they can grow to the point of overlap which
Predicting bite force in mammals: two-dimensional versus three-dimensional lever models.
Davis, J L; Santana, S E; Dumont, E R; Grosse, I R
2010-06-01
Bite force is a measure of whole-organism performance that is often used to investigate the relationships between performance, morphology and fitness. When in vivo measurements of bite force are unavailable, researchers often turn to lever models to predict bite forces. This study demonstrates that bite force predictions based on two-dimensional (2-D) lever models can be improved by including three-dimensional (3-D) geometry and realistic physiological cross-sectional areas derived from dissections. Widely used, the 2-D method does a reasonable job of predicting bite force. However, it does so by over predicting physiological cross-sectional areas for the masseter and pterygoid muscles and under predicting physiological cross-sectional areas for the temporalis muscle. We found that lever models that include the three dimensional structure of the skull and mandible and physiological cross-sectional areas calculated from dissected muscles provide the best predictions of bite force. Models that accurately represent the biting mechanics strengthen our understanding of which variables are functionally relevant and how they are relevant to feeding performance. PMID:20472771
Likelihood-Free Inference in High-Dimensional Models.
Kousathanas, Athanasios; Leuenberger, Christoph; Helfer, Jonas; Quinodoz, Mathieu; Foll, Matthieu; Wegmann, Daniel
2016-06-01
Methods that bypass analytical evaluations of the likelihood function have become an indispensable tool for statistical inference in many fields of science. These so-called likelihood-free methods rely on accepting and rejecting simulations based on summary statistics, which limits them to low-dimensional models for which the value of the likelihood is large enough to result in manageable acceptance rates. To get around these issues, we introduce a novel, likelihood-free Markov chain Monte Carlo (MCMC) method combining two key innovations: updating only one parameter per iteration and accepting or rejecting this update based on subsets of statistics approximately sufficient for this parameter. This increases acceptance rates dramatically, rendering this approach suitable even for models of very high dimensionality. We further derive that for linear models, a one-dimensional combination of statistics per parameter is sufficient and can be found empirically with simulations. Finally, we demonstrate that our method readily scales to models of very high dimensionality, using toy models as well as by jointly inferring the effective population size, the distribution of fitness effects (DFE) of segregating mutations, and selection coefficients for each locus from data of a recent experiment on the evolution of drug resistance in influenza. PMID:27052569
Emergent friction in two-dimensional Frenkel-Kontorova models
NASA Astrophysics Data System (ADS)
Norell, Jesper; Fasolino, Annalisa; de Wijn, Astrid S.
2016-08-01
Simple models for friction are typically one-dimensional, but real interfaces are two-dimensional. We investigate the effects of the second dimension on static and dynamic friction by using the Frenkel-Kontorova (FK) model. We study the two most straightforward extensions of the FK model to two dimensions and simulate both the static and dynamic properties. We show that the behavior of the static friction is robust and remains similar in two dimensions for physically reasonable parameter values. The dynamic friction, however, is strongly influenced by the second dimension and the accompanying additional dynamics and parameters introduced into the models. We discuss our results in terms of the thermal equilibration and phonon dispersion relations of the lattices, establishing a physically realistic and suitable two-dimensional extension of the FK model. We find that the presence of additional dissipation channels can increase the friction and produces significantly different temperature dependence when compared to the one-dimensional case. We also briefly study the anisotropy of the dynamic friction and show highly nontrivial effects, including that the friction anisotropy can lead to motion in different directions depending on the value of the initial velocity.
Brane compactifications and 4-dimensional geometry in the IKKT model
NASA Astrophysics Data System (ADS)
Polychronakos, Alexios P.; Steinacker, Harold; Zahn, Jochen
2013-10-01
We study in detail certain brane solutions with compact extra dimensions M4×K in the IKKT matrix model, with K being a two-dimensional rotating torus embedded in R6. We focus on the compactification moduli and the fluctuations of K⊂R6 and their physical significance. Mediated by the Poisson tensor, they contribute to the effective 4-dimensional metric on the brane, and thereby become gravitational degrees of freedom. We show that the zero modes corresponding to the global symmetries of the model lead to Ricci-flat 4-dimensional metric perturbations, wherever the energy-momentum tensor vanishes. Their coupling to the energy-momentum tensor depends on the extrinsic curvature of the brane.
Micropolar continuum modelling of bi-dimensional tetrachiral lattices
Chen, Y.; Liu, X. N.; Hu, G. K.; Sun, Q. P.; Zheng, Q. S.
2014-01-01
The in-plane behaviour of tetrachiral lattices should be characterized by bi-dimensional orthotropic material owing to the existence of two orthogonal axes of rotational symmetry. Moreover, the constitutive model must also represent the chirality inherent in the lattices. To this end, a bi-dimensional orthotropic chiral micropolar model is developed based on the theory of irreducible orthogonal tensor decomposition. The obtained constitutive tensors display a hierarchy structure depending on the symmetry of the underlying microstructure. Eight additional material constants, in addition to five for the hemitropic case, are introduced to characterize the anisotropy under Z2 invariance. The developed continuum model is then applied to a tetrachiral lattice, and the material constants of the continuum model are analytically derived by a homogenization process. By comparing with numerical simulations for the discrete lattice, it is found that the proposed continuum model can correctly characterize the static and wave properties of the tetrachiral lattice. PMID:24808754
Novak, Gregory S.; Ostriker, Jeremiah P.; Ciotti, Luca
2011-08-10
We extend the black hole (BH) feedback models of Ciotti, Ostriker, and Proga to two dimensions. In this paper, we focus on identifying the differences between the one-dimensional and two-dimensional hydrodynamical simulations. We examine a normal, isolated L{sub *} galaxy subject to the cooling flow instability of gas in the inner regions. Allowance is made for subsequent star formation, Type Ia and Type II supernovae, radiation pressure, and inflow to the central BH from mildly rotating galactic gas which is being replenished as a normal consequence of stellar evolution. The central BH accretes some of the infalling gas and expels a conical wind with mass, momentum, and energy flux derived from both observational and theoretical studies. The galaxy is assumed to have low specific angular momentum in analogy with the existing one-dimensional case in order to isolate the effect of dimensionality. The code then tracks the interaction of the outflowing radiation and winds with the galactic gas and their effects on regulating the accretion. After matching physical modeling to the extent possible between the one-dimensional and two-dimensional treatments, we find essentially similar results in terms of BH growth and duty cycle (fraction of the time above a given fraction of the Eddington luminosity). In the two-dimensional calculations, the cool shells forming at 0.1-1 kpc from the center are Rayleigh-Taylor unstable to fragmentation, leading to a somewhat higher accretion rate, less effective feedback, and a more irregular pattern of bursting compared with the one-dimensional case.
Three dimensional global modeling of atmospheric CO2
NASA Technical Reports Server (NTRS)
Fung, I.; Hansen, J.; Rind, D.
1983-01-01
A model was developed to study the prospects of extracting information on carbon dioxide sources and sinks from observed CO2 variations. The approach uses a three dimensional global transport model, based on winds from a 3-D general circulation model (GCM), to advect CO2 noninteractively, i.e., as a tracer, with specified sources and sinks of CO2 at the surface. The 3-D model employed is identified and biosphere, ocean and fossil fuel sources and sinks are discussed. Some preliminary model results are presented.
A Framework for Dimensionality Assessment for Multidimensional Item Response Models
ERIC Educational Resources Information Center
Svetina, Dubravka; Levy, Roy
2014-01-01
A framework is introduced for considering dimensionality assessment procedures for multidimensional item response models. The framework characterizes procedures in terms of their confirmatory or exploratory approach, parametric or nonparametric assumptions, and applicability to dichotomous, polytomous, and missing data. Popular and emerging…
Three dimensional geometric modeling of processing-tomatoes
Technology Transfer Automated Retrieval System (TEKTRAN)
Characterizing tomato geometries with different shapes and sizes would facilitate the design of tomato processing equipments and promote computer-based engineering simulations. This research sought to develop a three-dimensional geometric model that can describe the morphological attributes of proce...
Judgment Research and the Dimensional Model of Personality
ERIC Educational Resources Information Center
Garb, Howard N.
2008-01-01
Comments on the original article "Plate tectonics in the classification of personality disorder: Shifting to a dimensional model," by T. A. Widiger and T. J. Trull. The purpose of this comment is to address (a) whether psychologists know how personality traits are currently assessed by clinicians and (b) the reliability and validity of those…
A two-dimensional analytical model of petroleum vapor intrusion
NASA Astrophysics Data System (ADS)
Yao, Yijun; Verginelli, Iason; Suuberg, Eric M.
2016-02-01
In this study we present an analytical solution of a two-dimensional petroleum vapor intrusion model, which incorporates a steady-state diffusion-dominated vapor transport in a homogeneous soil and piecewise first-order aerobic biodegradation limited by oxygen availability. This new model can help practitioners to easily generate two-dimensional soil gas concentration profiles for both hydrocarbons and oxygen and estimate hydrocarbon indoor air concentrations as a function of site-specific conditions such as source strength and depth, reaction rate constant, soil characteristics and building features. The soil gas concentration profiles generated by this new model are shown in good agreement with three-dimensional numerical simulations and two-dimensional measured soil gas data from a field study. This implies that for cases involving diffusion dominated soil gas transport, steady state conditions and homogenous source and soil, this analytical model can be used as a fast and easy-to-use risk screening tool by replicating the results of 3-D numerical simulations but with much less computational effort.
THREE-DIMENSIONAL NAPL FATE AND TRANSPORT MODEL
We have added several new and significant capabilities to UTCHEM to make it into a general-purpose NAPL simulator. The simulator is now capable of modeling transient and steady-state three-dimensional flow and mass transport in the groundwater (saturated) and vadose (unsaturated...
A Five Dimensional Model for Teaching an Ethnic Content Course.
ERIC Educational Resources Information Center
Curiel, Herman; Euwing, Ella
A model suitable for use in a required social work course or a high-interest elective social work course on ethnic groups, racism, or cross cultural studies uses a five dimensional approach. An elective course entitled "Cultural Diversity and the Helping Process" provides a case study. This course has been taught since 1981 and has occasionally…
Interactive Multimedia and Concrete Three-Dimensional Modelling.
ERIC Educational Resources Information Center
Baxter, J. H.; Preece, Peter F. W.
1999-01-01
Compares a multimedia package for teaching about the phases of the moon to grade 8 (12-year-old) students with a conventional three-dimensional modeling approach. Results show both methods were equally effective in terms of student learning, for male and female students, and prior computer experience was not a factor in multimedia use. (Author/LRW)
A multiphase model for three-dimensional tumor growth
NASA Astrophysics Data System (ADS)
Sciumè, G.; Shelton, S.; Gray, W. G.; Miller, C. T.; Hussain, F.; Ferrari, M.; Decuzzi, P.; Schrefler, B. A.
2013-01-01
Several mathematical formulations have analyzed the time-dependent behavior of a tumor mass. However, most of these propose simplifications that compromise the physical soundness of the model. Here, multiphase porous media mechanics is extended to model tumor evolution, using governing equations obtained via the thermodynamically constrained averaging theory. A tumor mass is treated as a multiphase medium composed of an extracellular matrix (ECM); tumor cells (TCs), which may become necrotic depending on the nutrient concentration and tumor phase pressure; healthy cells (HCs); and an interstitial fluid for the transport of nutrients. The equations are solved by a finite element method to predict the growth rate of the tumor mass as a function of the initial tumor-to-healthy cell density ratio, nutrient concentration, mechanical strain, cell adhesion and geometry. Results are shown for three cases of practical biological interest such as multicellular tumor spheroids (MTSs) and tumor cords. First, the model is validated by experimental data for time-dependent growth of an MTS in a culture medium. The tumor growth pattern follows a biphasic behavior: initially, the rapidly growing TCs tend to saturate the volume available without any significant increase in overall tumor size; then, a classical Gompertzian pattern is observed for the MTS radius variation with time. A core with necrotic cells appears for tumor sizes larger than 150 μm, surrounded by a shell of viable TCs whose thickness stays almost constant with time. A formula to estimate the size of the necrotic core is proposed. In the second case, the MTS is confined within a healthy tissue. The growth rate is reduced, as compared to the first case—mostly due to the relative adhesion of the TCs and HCs to the ECM, and the less favorable transport of nutrients. In particular, for HCs adhering less avidly to the ECM, the healthy tissue is progressively displaced as the malignant mass grows, whereas TC
Star-triangle relation for a three-dimensional model
Bazhanov, V.V. Institute for High Eenrgy Physics, Protvino, Moscow Region ); Baxter, R.J. Australian National Univ., Canberra )
1993-06-01
The solvable sl(n)-chiral Potts model can be interpreted as a three-dimensional lattice model with local interactions. To within a minor modification of the boundary conditions it is an Ising-type model on the body-centered cubic lattice with two- and three-spin interactions. The corresponding local Boltzmann weights obey a number of simple relations, including a restricted star-triangle relation, which is a modified version of the well-known star-triangle relation appearing in two-dimensional models. It is shown that these relations lead to remarkable symmetry properties of the Boltzmann weight function of an elementary cube of the lattice, related to the spatial symmetry group of the cubic lattice. These symmetry properties allow one to prove the commutativity of the row-to-row transfer matrices, bypassing the tetrahedron relation. The partition function per site for the infinite lattice is calculated exactly. 20 refs., 4 figs.
Integrable cosmological models from higher dimensional Einstein equations
Sano, Masakazu; Suzuki, Hisao
2007-09-15
We consider the cosmological models for the higher dimensional space-time which includes the curvatures of our space as well as the curvatures of the internal space. We find that the condition for the integrability of the cosmological equations is that the total space-time dimensions are D=10 or D=11 which is exactly the conditions for superstrings or M theory. We obtain analytic solutions with generic initial conditions in the four-dimensional Einstein frame and study the accelerating universe when both our space and the internal space have negative curvatures.
Numerical simulations of a reduced model for blood coagulation
NASA Astrophysics Data System (ADS)
Pavlova, Jevgenija; Fasano, Antonio; Sequeira, Adélia
2016-04-01
In this work, the three-dimensional numerical resolution of a complex mathematical model for the blood coagulation process is presented. The model was illustrated in Fasano et al. (Clin Hemorheol Microcirc 51:1-14, 2012), Pavlova et al. (Theor Biol 380:367-379, 2015). It incorporates the action of the biochemical and cellular components of blood as well as the effects of the flow. The model is characterized by a reduction in the biochemical network and considers the impact of the blood slip at the vessel wall. Numerical results showing the capacity of the model to predict different perturbations in the hemostatic system are discussed.
Investigation on the Practicality of Developing Reduced Thermal Models
NASA Technical Reports Server (NTRS)
Lombardi, Giancarlo; Yang, Kan
2015-01-01
Throughout the spacecraft design and development process, detailed instrument thermal models are created to simulate their on-orbit behavior and to ensure that they do not exceed any thermal limits. These detailed models, while generating highly accurate predictions, can sometimes lead to long simulation run times, especially when integrated with a spacecraft observatory model. Therefore, reduced models containing less detail are typically produced in tandem with the detailed models so that results may be more readily available, albeit less accurate. In the current study, both reduced and detailed instrument models are integrated with their associated spacecraft bus models to examine the impact of instrument model reduction on run time and accuracy. Preexisting instrument bus thermal model pairs from several projects were used to determine trends between detailed and reduced thermal models; namely, the Mirror Optical Bench (MOB) on the Gravity and Extreme Magnetism Small Explorer (GEMS) spacecraft, Advanced Topography Laser Altimeter System (ATLAS) on the Ice, Cloud, and Elevation Satellite 2 (ICESat-2), and the Neutral Mass Spectrometer (NMS) on the Lunar Atmosphere and Dust Environment Explorer (LADEE). Hot and cold cases were run for each model to capture the behavior of the models at both thermal extremes. It was found that, though decreasing the number of nodes from a detailed to reduced model brought about a reduction in the run-time, a large time savings was not observed, nor was it a linear relationship between the percentage of nodes reduced and time saved. However, significant losses in accuracy were observed with greater model reduction. It was found that while reduced models are useful in decreasing run time, there exists a threshold of reduction where, once exceeded, the loss in accuracy outweighs the benefit from reduced model runtime.
NASA Astrophysics Data System (ADS)
Ahmed, Raheel; Edwards, Michael G.; Lamine, Sadok; Huisman, Bastiaan A. H.; Pal, Mayur
2015-12-01
A novel cell-centred control-volume distributed multi-point flux approximation (CVD-MPFA) finite-volume formulation is presented for discrete fracture-matrix simulations on unstructured grids in three-dimensions (3D). The grid is aligned with fractures and barriers which are then modelled as lower-dimensional surface interfaces located between the matrix cells in the physical domain. The three-dimensional pressure equation is solved in the matrix domain coupled with a two-dimensional (2D) surface pressure equation solved over fracture networks via a novel surface CVD-MPFA formulation. The CVD-MPFA formulation naturally handles fractures with anisotropic permeabilities on unstructured grids. Matrix-fracture fluxes are expressed in terms of matrix and fracture pressures and define the transfer function, which is added to the lower-dimensional flow equation and couples the three-dimensional and surface systems. An additional transmission condition is used between matrix cells adjacent to low permeable fractures to couple the velocity and pressure jump across the fractures. Convergence and accuracy of the lower-dimensional fracture model is assessed for highly anisotropic fractures having a range of apertures and permeability tensors. A transport equation for tracer flow is coupled via the Darcy flux for single and intersecting fractures. The lower-dimensional approximation for intersecting fractures avoids the more restrictive CFL condition corresponding to the equi-dimensional approximation with explicit time discretisation. Lower-dimensional fracture model results are compared with equi-dimensional model results. Fractures and barriers are efficiently modelled by lower-dimensional interfaces which yield comparable results to those of the equi-dimensional model. Pressure continuity is built into the model across highly conductive fractures, leading to reduced local degrees of freedom in the CVD-MPFA approximation. The formulation is applied to geologically complex
Approaches to verification of two-dimensional water quality models
Butkus, S.R. . Water Quality Dept.)
1990-11-01
The verification of a water quality model is the one procedure most needed by decision making evaluating a model predictions, but is often not adequate or done at all. The results of a properly conducted verification provide the decision makers with an estimate of the uncertainty associated with model predictions. Several statistical tests are available for quantifying of the performance of a model. Six methods of verification were evaluated using an application of the BETTER two-dimensional water quality model for Chickamauga reservoir. Model predictions for ten state variables were compared to observed conditions from 1989. Spatial distributions of the verification measures showed the model predictions were generally adequate, except at a few specific locations in the reservoir. The most useful statistics were the mean standard error of the residuals. Quantifiable measures of model performance should be calculated during calibration and verification of future applications of the BETTER model. 25 refs., 5 figs., 7 tabs.
A refined one-dimensional rotordynamics model with three-dimensional capabilities
NASA Astrophysics Data System (ADS)
Carrera, E.; Filippi, M.
2016-03-01
This paper evaluates the vibration characteristics of various rotating structures. The present methodology exploits the one-dimensional Carrera Unified Formulation (1D CUF), which enables one to go beyond the kinematic assumptions of classical beam theories. According to the component-wise (CW) approach, Lagrange-like polynomial expansions (LE) are here adopted to develop the refined displacement theories. The LE elements make it possible to model each structural component of the rotor with an arbitrary degree of accuracy using either different displacement theories or localized mesh refinements. Hamilton's Principle is used to derive the governing equations, which are solved by the Finite Element Method. The CUF one-dimensional theory includes all the effects due to rotation, namely the Coriolis term, spin softening and geometrical stiffening. The numerical simulations have been performed considering a thin ring, discs and bladed-deformable shafts. The effects of the number and the position of the blades on the dynamic stability of the rotor have been evaluated. The results have been compared, when possible, with the 2D and 3D solutions that are available in the literature. CUF models appear very practical to investigate the dynamics of complex rotating structures since they provide 2D and quasi-3D results, while preserving the computational effectiveness of one-dimensional solutions.
Three-dimensional "Mercedes-Benz" model for water.
Dias, Cristiano L; Ala-Nissila, Tapio; Grant, Martin; Karttunen, Mikko
2009-08-01
In this paper we introduce a three-dimensional version of the Mercedes-Benz model to describe water molecules. In this model van der Waals interactions and hydrogen bonds are given explicitly through a Lennard-Jones potential and a Gaussian orientation-dependent terms, respectively. At low temperature the model freezes forming Ice-I and it reproduces the main peaks of the experimental radial distribution function of water. In addition to these structural properties, the model also captures the thermodynamical anomalies of water: The anomalous density profile, the negative thermal expansivity, the large heat capacity, and the minimum in the isothermal compressibility. PMID:19673572
Three-dimensional ``Mercedes-Benz'' model for water
NASA Astrophysics Data System (ADS)
Dias, Cristiano L.; Ala-Nissila, Tapio; Grant, Martin; Karttunen, Mikko
2009-08-01
In this paper we introduce a three-dimensional version of the Mercedes-Benz model to describe water molecules. In this model van der Waals interactions and hydrogen bonds are given explicitly through a Lennard-Jones potential and a Gaussian orientation-dependent terms, respectively. At low temperature the model freezes forming Ice-I and it reproduces the main peaks of the experimental radial distribution function of water. In addition to these structural properties, the model also captures the thermodynamical anomalies of water: The anomalous density profile, the negative thermal expansivity, the large heat capacity, and the minimum in the isothermal compressibility.
A one-dimensional basic oscillator model of the vircator
NASA Astrophysics Data System (ADS)
Biswas, Debabrata
2009-06-01
A one-dimensional model of the virtual cathode oscillator (vircator) is proposed keeping only the essential physical processes. The basic model consists of a radiating charge in an oscillating electric field. Using parameters from (realistic) particle-in-cell simulations such as the charge Q and amplitude E1 of the oscillating electric field, the model correctly predicts the amplitude of virtual cathode oscillation and the power radiated. The basic model is then extended to incorporate beam-cavity interaction and the resonance effect.
SOLVING THE TWO-DIMENSIONAL DIFFUSION FLOW MODEL.
Hromadka, T.V., II; Lai, Chintu
1985-01-01
A simplification of the two-dimensional (2-D) continuity and momentum equations is the diffusion equation. To investigate its capability, the numerical model using the diffusion approach is applied to a hypothetical failure problem of a regional water reservoir. The model is based on an explicit, integrated finite-difference scheme, and the floodplain is simulated by a popular home computer which supports 64K FORTRAN. Though simple, the 2-D model can simulate some interesting flooding effects that a 1-D full dynamic model cannot.
Four-Dimensional Global Reference-Atmosphere Model
NASA Technical Reports Server (NTRS)
Johnson, Dale; Blocker, Rhonda S.
1988-01-01
Four-Dimensional Global Reference Atmosphere Model (GRAM) computer program developed from empirical atmospheric model generating values for pressure, density, temperature, and winds, from ground to orbital altitudes. Is amalgamation of two empirical atmospheric models for low and high atmosphere with newly-developed latitude-and longitude-dependent model for middle atmosphere. UNIVAC version written in UNIVAC FORTRAN. DEC VAX version of GRAM written in FORTRAN 77. Applications include simulation of reentry trajectories of external tanks, studies of global circulation and diffusion and generation of plots or data for comparison.
Two-dimensional Core-collapse Supernova Models with Multi-dimensional Transport
NASA Astrophysics Data System (ADS)
Dolence, Joshua C.; Burrows, Adam; Zhang, Weiqun
2015-02-01
We present new two-dimensional (2D) axisymmetric neutrino radiation/hydrodynamic models of core-collapse supernova (CCSN) cores. We use the CASTRO code, which incorporates truly multi-dimensional, multi-group, flux-limited diffusion (MGFLD) neutrino transport, including all relevant {O}(v/c) terms. Our main motivation for carrying out this study is to compare with recent 2D models produced by other groups who have obtained explosions for some progenitor stars and with recent 2D VULCAN results that did not incorporate {O}(v/c) terms. We follow the evolution of 12, 15, 20, and 25 solar-mass progenitors to approximately 600 ms after bounce and do not obtain an explosion in any of these models. Though the reason for the qualitative disagreement among the groups engaged in CCSN modeling remains unclear, we speculate that the simplifying "ray-by-ray" approach employed by all other groups may be compromising their results. We show that "ray-by-ray" calculations greatly exaggerate the angular and temporal variations of the neutrino fluxes, which we argue are better captured by our multi-dimensional MGFLD approach. On the other hand, our 2D models also make approximations, making it difficult to draw definitive conclusions concerning the root of the differences between groups. We discuss some of the diagnostics often employed in the analyses of CCSN simulations and highlight the intimate relationship between the various explosion conditions that have been proposed. Finally, we explore the ingredients that may be missing in current calculations that may be important in reproducing the properties of the average CCSNe, should the delayed neutrino-heating mechanism be the correct mechanism of explosion.
TWO-DIMENSIONAL CORE-COLLAPSE SUPERNOVA MODELS WITH MULTI-DIMENSIONAL TRANSPORT
Dolence, Joshua C.; Burrows, Adam; Zhang, Weiqun E-mail: burrows@astro.princeton.edu
2015-02-10
We present new two-dimensional (2D) axisymmetric neutrino radiation/hydrodynamic models of core-collapse supernova (CCSN) cores. We use the CASTRO code, which incorporates truly multi-dimensional, multi-group, flux-limited diffusion (MGFLD) neutrino transport, including all relevant O(v/c) terms. Our main motivation for carrying out this study is to compare with recent 2D models produced by other groups who have obtained explosions for some progenitor stars and with recent 2D VULCAN results that did not incorporate O(v/c) terms. We follow the evolution of 12, 15, 20, and 25 solar-mass progenitors to approximately 600 ms after bounce and do not obtain an explosion in any of these models. Though the reason for the qualitative disagreement among the groups engaged in CCSN modeling remains unclear, we speculate that the simplifying ''ray-by-ray'' approach employed by all other groups may be compromising their results. We show that ''ray-by-ray'' calculations greatly exaggerate the angular and temporal variations of the neutrino fluxes, which we argue are better captured by our multi-dimensional MGFLD approach. On the other hand, our 2D models also make approximations, making it difficult to draw definitive conclusions concerning the root of the differences between groups. We discuss some of the diagnostics often employed in the analyses of CCSN simulations and highlight the intimate relationship between the various explosion conditions that have been proposed. Finally, we explore the ingredients that may be missing in current calculations that may be important in reproducing the properties of the average CCSNe, should the delayed neutrino-heating mechanism be the correct mechanism of explosion.
Equation of State of the Two-Dimensional Hubbard Model.
Cocchi, Eugenio; Miller, Luke A; Drewes, Jan H; Koschorreck, Marco; Pertot, Daniel; Brennecke, Ferdinand; Köhl, Michael
2016-04-29
The subtle interplay between kinetic energy, interactions, and dimensionality challenges our comprehension of strongly correlated physics observed, for example, in the solid state. In this quest, the Hubbard model has emerged as a conceptually simple, yet rich model describing such physics. Here we present an experimental determination of the equation of state of the repulsive two-dimensional Hubbard model over a broad range of interactions 0≲U/t≲20 and temperatures, down to k_{B}T/t=0.63(2) using high-resolution imaging of ultracold fermionic atoms in optical lattices. We show density profiles, compressibilities, and double occupancies over the whole doping range, and, hence, our results constitute benchmarks for state-of-the-art theoretical approaches. PMID:27176527
Equation of State of the Two-Dimensional Hubbard Model
NASA Astrophysics Data System (ADS)
Cocchi, Eugenio; Miller, Luke A.; Drewes, Jan H.; Koschorreck, Marco; Pertot, Daniel; Brennecke, Ferdinand; Köhl, Michael
2016-04-01
The subtle interplay between kinetic energy, interactions, and dimensionality challenges our comprehension of strongly correlated physics observed, for example, in the solid state. In this quest, the Hubbard model has emerged as a conceptually simple, yet rich model describing such physics. Here we present an experimental determination of the equation of state of the repulsive two-dimensional Hubbard model over a broad range of interactions 0 ≲U /t ≲20 and temperatures, down to kBT /t =0.63 (2 ) using high-resolution imaging of ultracold fermionic atoms in optical lattices. We show density profiles, compressibilities, and double occupancies over the whole doping range, and, hence, our results constitute benchmarks for state-of-the-art theoretical approaches.
Three Dimensional Thermal Abuse Reaction Model for Lithium Ion Batteries
Energy Science and Technology Software Center (ESTSC)
2006-06-29
Three dimensional computer models for simulating thermal runaway of lithium ion battery was developed. The three-dimensional model captures the shapes and dimensions of cell components and the spatial distributions of materials and temperatures, so we could consider the geometrical features, which are critical especially in large cells. An array of possible exothermic reactions, such as solid-electrolyte-interface (SEI) layer decomposition, negative active/electrolyte reaction, and positive active/electrolyte reaction, were considered and formulated to fit experimental data frommore » accelerating rate calorimetry and differential scanning calorimetry. User subroutine code was written to implement NREL developed approach and to utilize a commercially available solver. The model is proposed to use for simulation a variety of lithium-ion battery safety events including thermal heating and short circuit.« less
An interactive three-dimensional nose model for rhinosurgery.
Heppt, Werner Johannes; Godbersen, Heinrich; Hildebrandt, Thomas
2013-04-01
The motivation behind the development of a new interactive three-dimensional (3D) model of the cartilaginous and bony framework of the nose originated from the significant demand for sophisticated patient communication and for accurate documentation of the surgical steps in rhinoplasty. Basically, the model consists of three features--the viewer function, the freehand function, and default applications--enabling the surgeon to replicate fundamental compilations of findings and to graphically document operative measures easily. The user is able to save all graphics in two-dimensional format and allocate them to patient files. Because the application was designed to be sufficiently universal without being too complex, the 3D model provides a well-balanced mix between freehand and default functions, representing the consistent development of currently available tools. PMID:23564244
Three Dimensional Thermal Abuse Reaction Model for Lithium Ion Batteries
and Ahmad Pesaran, Gi-Heon Kim
2006-06-29
Three dimensional computer models for simulating thermal runaway of lithium ion battery was developed. The three-dimensional model captures the shapes and dimensions of cell components and the spatial distributions of materials and temperatures, so we could consider the geometrical features, which are critical especially in large cells. An array of possible exothermic reactions, such as solid-electrolyte-interface (SEI) layer decomposition, negative active/electrolyte reaction, and positive active/electrolyte reaction, were considered and formulated to fit experimental data from accelerating rate calorimetry and differential scanning calorimetry. User subroutine code was written to implement NREL developed approach and to utilize a commercially available solver. The model is proposed to use for simulation a variety of lithium-ion battery safety events including thermal heating and short circuit.
A three-dimensional model of Tangential YORP
Golubov, O.; Scheeres, D. J.; Krugly, Yu. N.
2014-10-10
Tangential YORP, or TYORP, has recently been demonstrated to be an important factor in the evolution of an asteroid's rotation state. It is complementary to normal YORP, or NYORP, which used to be considered previously. While NYORP is produced by non-symmetry in the large-scale geometry of an asteroid, TYORP is due to heat conductivity in stones on the surface of the asteroid. To date, TYORP has been studied only in a simplified one-dimensional model, substituting stones with high long walls. This article for the first time considers TYORP in a realistic three-dimensional model, also including shadowing and self-illumination effects via ray tracing. TYORP is simulated for spherical stones lying on regolith. The model includes only five free parameters and the dependence of the TYORP on each of them is studied. The TYORP torque appears to be smaller than previous estimates from the one-dimensional model, but is still comparable to the NYORP torques. These results can be used to estimate TYORP of different asteroids and also as a basis for more sophisticated models of TYORP.
Statistical mechanics of shell models for two-dimensional turbulence
NASA Astrophysics Data System (ADS)
Aurell, E.; Boffetta, G.; Crisanti, A.; Frick, P.; Paladin, G.; Vulpiani, A.
1994-12-01
We study shell models that conserve the analogs of energy and enstrophy and hence are designed to mimic fluid turbulence in two-dimensions (2D). The main result is that the observed state is well described as a formal statistical equilibrium, closely analogous to the approach to two-dimensional ideal hydrodynamics of Onsager [Nuovo Cimento Suppl. 6, 279 (1949)], Hopf [J. Rat. Mech. Anal. 1, 87 (1952)], and Lee [Q. Appl. Math. 10, 69 (1952)]. In the presence of forcing and dissipation we observe a forward flux of enstrophy and a backward flux of energy. These fluxes can be understood as mean diffusive drifts from a source to two sinks in a system which is close to local equilibrium with Lagrange multipliers (``shell temperatures'') changing slowly with scale. This is clear evidence that the simplest shell models are not adequate to reproduce the main features of two-dimensional turbulence. The dimensional predictions on the power spectra from a supposed forward cascade of enstrophy and from one branch of the formal statistical equilibrium coincide in these shell models in contrast to the corresponding predictions for the Navier-Stokes and Euler equations in 2D. This coincidence has previously led to the mistaken conclusion that shell models exhibit a forward cascade of enstrophy. We also study the dynamical properties of the models and the growth of perturbations.
A three-dimensional spin-diffusion model for micromagnetics
Abert, Claas; Ruggeri, Michele; Bruckner, Florian; Vogler, Christoph; Hrkac, Gino; Praetorius, Dirk; Suess, Dieter
2015-01-01
We solve a time-dependent three-dimensional spin-diffusion model coupled to the Landau-Lifshitz-Gilbert equation numerically. The presented model is validated by comparison to two established spin-torque models: The model of Slonzewski that describes spin-torque in multi-layer structures in the presence of a fixed layer and the model of Zhang and Li that describes current driven domain-wall motion. It is shown that both models are incorporated by the spin-diffusion description, i.e., the nonlocal effects of the Slonzewski model are captured as well as the spin-accumulation due to magnetization gradients as described by the model of Zhang and Li. Moreover, the presented method is able to resolve the time dependency of the spin-accumulation. PMID:26442796
A three-dimensional spin-diffusion model for micromagnetics.
Abert, Claas; Ruggeri, Michele; Bruckner, Florian; Vogler, Christoph; Hrkac, Gino; Praetorius, Dirk; Suess, Dieter
2015-01-01
We solve a time-dependent three-dimensional spin-diffusion model coupled to the Landau-Lifshitz-Gilbert equation numerically. The presented model is validated by comparison to two established spin-torque models: The model of Slonzewski that describes spin-torque in multi-layer structures in the presence of a fixed layer and the model of Zhang and Li that describes current driven domain-wall motion. It is shown that both models are incorporated by the spin-diffusion description, i.e., the nonlocal effects of the Slonzewski model are captured as well as the spin-accumulation due to magnetization gradients as described by the model of Zhang and Li. Moreover, the presented method is able to resolve the time dependency of the spin-accumulation. PMID:26442796
A three-dimensional spin-diffusion model for micromagnetics
NASA Astrophysics Data System (ADS)
Abert, Claas; Ruggeri, Michele; Bruckner, Florian; Vogler, Christoph; Hrkac, Gino; Praetorius, Dirk; Suess, Dieter
2015-10-01
We solve a time-dependent three-dimensional spin-diffusion model coupled to the Landau-Lifshitz-Gilbert equation numerically. The presented model is validated by comparison to two established spin-torque models: The model of Slonzewski that describes spin-torque in multi-layer structures in the presence of a fixed layer and the model of Zhang and Li that describes current driven domain-wall motion. It is shown that both models are incorporated by the spin-diffusion description, i.e., the nonlocal effects of the Slonzewski model are captured as well as the spin-accumulation due to magnetization gradients as described by the model of Zhang and Li. Moreover, the presented method is able to resolve the time dependency of the spin-accumulation.
Two dimensional hydrodynamic modeling of a high latitude braided river
NASA Astrophysics Data System (ADS)
Humphries, E.; Pavelsky, T.; Bates, P. D.
2014-12-01
Rivers are a fundamental resource to physical, ecologic and human systems, yet quantification of river flow in high-latitude environments remains limited due to the prevalence of complex morphologies, remote locations and sparse in situ monitoring equipment. Advances in hydrodynamic modeling and remote sensing technology allow us to address questions such as: How well can two-dimensional models simulate a flood wave in a highly 3-dimensional braided river environment, and how does the structure of such a flood wave differ from flow down a similar-sized single-channel river? Here, we use the raster-based hydrodynamic model LISFLOOD-FP to simulate flood waves, discharge, water surface height, and velocity measurements over a ~70 km reach of the Tanana River in Alaska. In order to use LISFLOOD-FP a digital elevation model (DEM) fused with detailed bathymetric data is required. During summer 2013, we surveyed 220,000 bathymetric points along the study reach using an echo sounder system connected to a high-precision GPS unit. The measurements are interpolated to a smooth bathymetric surface, using Topo to Raster interpolation, and combined with an existing five meter DEM (Alaska IfSAR) to create a seamless river terrain model. Flood waves are simulated using varying complexities in model solvers, then compared to gauge records and water logger data to assess major sources of model uncertainty. Velocity and flow direction maps are also assessed and quantified for detailed analysis of braided channel flow. The most accurate model output occurs with using the full two-dimensional model structure, and major inaccuracies appear to be related to DEM quality and roughness values. Future work will intercompare model outputs with extensive ground measurements and new data from AirSWOT, an airborne analog for the Surface Water and Ocean Topography (SWOT) mission, which aims to provide high-resolution measurements of terrestrial and ocean water surface elevations globally.
Error Estimation for Reduced Order Models of Dynamical Systems
Homescu, C; Petzold, L; Serban, R
2004-01-22
The use of reduced order models to describe a dynamical system is pervasive in science and engineering. Often these models are used without an estimate of their error or range of validity. In this paper we consider dynamical systems and reduced models built using proper orthogonal decomposition. We show how to compute estimates and bounds for these errors, by a combination of small sample statistical condition estimation and error estimation using the adjoint method. Most importantly, the proposed approach allows the assessment of regions of validity for reduced models, i.e., ranges of perturbations in the original system over which the reduced model is still appropriate. Numerical examples validate our approach: the error norm estimates approximate well the forward error while the derived bounds are within an order of magnitude.
NASA Astrophysics Data System (ADS)
Coudert, L. H.
2015-01-01
Torsional control is studied theoretically using a four-dimensional (4D) model introduced recently [Phys. Rev. Lett. 107, 113004 (2011), 10.1103/PhysRevLett.107.113004 and Phys. Rev. A 87, 043403 (2013), 10.1103/PhysRevA.87.043403] for calculating energy levels and eigenfunctions of nonrigid biphenyl-like molecules undergoing internal rotation and subject to a strong electric field. The time-dependent Schrödinger equation is solved to determine the behavior of the molecule when submitted to a short laser pulse. Torsional alignment is investigated for four limiting hindering potentials and for several peak laser intensities. The results obtained with the 4D model are compared to those from already available 2D and 1D models. Similar results are found with the 4D and 2D model and are consistent with the molecule interacting the most with the electric field for the hindering potential displaying four minima with D2 d symmetry staggered equilibrium configurations. Molecular axis alignment is also investigated and it is found that the one arising with the 4D model starts deviating substantially from the one arising with a rigid rotator for a value of the peak laser intensity of 3 ×1013 W/cm 2.
Reduced order modeling of the Newton formulation of MODFLOW to solve unconfined groundwater flow
NASA Astrophysics Data System (ADS)
Boyce, Scott E.; Nishikawa, Tracy; Yeh, William W.-G.
2015-09-01
Projection-based model reduction techniques have been shown to be very effective for reducing the computational burden of high-dimensional groundwater simulations, but only applied to confined groundwater flow. A new methodology is proposed that reduces the dimension of a discretized, transient, unconfined groundwater-flow model. This unconfined model reduction technique is based on Galerkin projection and the Newton formulation of MODFLOW. The method is implemented following the standard package design and code structure that MODFLOW employs for all its features. When the package is invoked within MODFLOW it can collect snapshots, produce a basis, construct the reduced model and propagate the reduced model forward in time. The new formulation accurately represents the water-table surface under a variety of nonlinear settings, such as intraborehole flow from a Multi-Node Well. The unconfined model reduction is applied to four test cases to illustrate its flexibility in handling nonlinear features. Several test cases are discussed to demonstrate the unconfined model reduction applicability. The final test case applies the new model reduction methodology to a scoping MODFLOW model of Santa Barbara, CA composed of 113,578 cells, which requires solving 113,578 equations per time step, and reduces it to 127 equations.
Quasi-One-Dimensional Modeling of Pulse Detonation Rocket Engines
NASA Technical Reports Server (NTRS)
Morris, Christopher I.
2002-01-01
Pulsed detonation rocket engines (PDREs) have generated considerable research interest in recent years as a chemical propulsion system potentially offering improved performance and reduced complexity compared to conventional rocket engines. The detonative mode of combustion employed by these devices offers a thermodynamic advantage over the constant-pressure deflagrative combustion mode used in conventional rocket engines and gas turbines. However, while this theoretical advantage has spurred a great deal of interest in building PDRE devices, the unsteady blowdown process intrinsic to the PDRE has made realistic estimates of the actual propulsive performance problematic. The recent review article by Kailasanath highlights some of the difficulties in comparing the available experimental measurements with numerical models. In a previous paper by the author, parametric studies of the performance of a single, straight-tube PDRE were reported. A 1-D, unsteady method of characteristics code, employing a constant-gamma assumption behind the detonation front, was developed for that study. Models of this type are computationally inexpensive, and are particularly useful for parametric performance comparisons. For example, a plot showing the specific impulse of various PDRE and steady-state rocket engine (SSRE) configurations as a function of blowdown pressure ratio. The performance curves clearly indicate that a straight-tube PDRE is superior in specific impulse to a SSRE with a sonic nozzle over the entire range of pressure ratios. Note, however, that a straight-tube PDRE in general does not compare favorably to a SSRE fitted with an optimized de Laval supersonic nozzle, particularly at the high pressure ratios typical for boost or in-space rocket applications. However, the calculations also show that if a dynamically optimized, supersonic de Laval nozzle could be could be fitted to a PDRE, then the specific impulse of the device would exceed that of a comparable SSRE
Fermion masses and mixing in general warped extra dimensional models
NASA Astrophysics Data System (ADS)
Frank, Mariana; Hamzaoui, Cherif; Pourtolami, Nima; Toharia, Manuel
2015-06-01
We analyze fermion masses and mixing in a general warped extra dimensional model, where all the Standard Model (SM) fields, including the Higgs, are allowed to propagate in the bulk. In this context, a slightly broken flavor symmetry imposed universally on all fermion fields, without distinction, can generate the full flavor structure of the SM, including quarks, charged leptons and neutrinos. For quarks and charged leptons, the exponential sensitivity of their wave functions to small flavor breaking effects yield hierarchical masses and mixing as it is usual in warped models with fermions in the bulk. In the neutrino sector, the exponential wave-function factors can be flavor blind and thus insensitive to the small flavor symmetry breaking effects, directly linking their masses and mixing angles to the flavor symmetric structure of the five-dimensional neutrino Yukawa couplings. The Higgs must be localized in the bulk and the model is more successful in generalized warped scenarios where the metric background solution is different than five-dimensional anti-de Sitter (AdS5 ). We study these features in two simple frameworks, flavor complimentarity and flavor democracy, which provide specific predictions and correlations between quarks and leptons, testable as more precise data in the neutrino sector becomes available.
A THREE-DIMENSIONAL BABCOCK-LEIGHTON SOLAR DYNAMO MODEL
Miesch, Mark S.; Dikpati, Mausumi
2014-04-10
We present a three-dimensional (3D) kinematic solar dynamo model in which poloidal field is generated by the emergence and dispersal of tilted sunspot pairs (more generally bipolar magnetic regions, or BMRs). The axisymmetric component of this model functions similarly to previous 2.5 dimensional (2.5D, axisymmetric) Babcock-Leighton (BL) dynamo models that employ a double-ring prescription for poloidal field generation but we generalize this prescription into a 3D flux emergence algorithm that places BMRs on the surface in response to the dynamo-generated toroidal field. In this way, the model can be regarded as a unification of BL dynamo models (2.5D in radius/latitude) and surface flux transport models (2.5D in latitude/longitude) into a more self-consistent framework that builds on the successes of each while capturing the full 3D structure of the evolving magnetic field. The model reproduces some basic features of the solar cycle including an 11 yr periodicity, equatorward migration of toroidal flux in the deep convection zone, and poleward propagation of poloidal flux at the surface. The poleward-propagating surface flux originates as trailing flux in BMRs, migrates poleward in multiple non-axisymmetric streams (made axisymmetric by differential rotation and turbulent diffusion), and eventually reverses the polar field, thus sustaining the dynamo. In this Letter we briefly describe the model, initial results, and future plans.
New data assimilation system DNDAS for high-dimensional models
NASA Astrophysics Data System (ADS)
Qun-bo, Huang; Xiao-qun, Cao; Meng-bin, Zhu; Wei-min, Zhang; Bai-nian, Liu
2016-05-01
The tangent linear (TL) models and adjoint (AD) models have brought great difficulties for the development of variational data assimilation system. It might be impossible to develop them perfectly without great efforts, either by hand, or by automatic differentiation tools. In order to break these limitations, a new data assimilation system, dual-number data assimilation system (DNDAS), is designed based on the dual-number automatic differentiation principles. We investigate the performance of DNDAS with two different optimization schemes and subsequently give a discussion on whether DNDAS is appropriate for high-dimensional forecast models. The new data assimilation system can avoid the complicated reverse integration of the adjoint model, and it only needs the forward integration in the dual-number space to obtain the cost function and its gradient vector concurrently. To verify the correctness and effectiveness of DNDAS, we implemented DNDAS on a simple ordinary differential model and the Lorenz-63 model with different optimization methods. We then concentrate on the adaptability of DNDAS to the Lorenz-96 model with high-dimensional state variables. The results indicate that whether the system is simple or nonlinear, DNDAS can accurately reconstruct the initial condition for the forecast model and has a strong anti-noise characteristic. Given adequate computing resource, the quasi-Newton optimization method performs better than the conjugate gradient method in DNDAS. Project supported by the National Natural Science Foundation of China (Grant Nos. 41475094 and 41375113).
NASA Astrophysics Data System (ADS)
Fang, F.; Zhang, T.; Pavlidis, D.; Pain, C. C.; Buchan, A. G.; Navon, I. M.
2014-10-01
A novel reduced order model (ROM) based on proper orthogonal decomposition (POD) has been developed for a finite-element (FE) adaptive mesh air pollution model. A quadratic expansion of the non-linear terms is employed to ensure the method remained efficient. This is the first time such an approach has been applied to air pollution LES turbulent simulation through three dimensional landscapes. The novelty of this work also includes POD's application within a FE-LES turbulence model that uses adaptive resolution. The accuracy of the reduced order model is assessed and validated for a range of 2D and 3D urban street canyon flow problems. By comparing the POD solutions against the fine detail solutions obtained from the full FE model it is shown that the accuracy is maintained, where fine details of the air flows are captured, whilst the computational requirements are reduced. In the examples presented below the size of the reduced order models is reduced by factors up to 2400 in comparison to the full FE model while the CPU time is reduced by up to 98% of that required by the full model.
Reduced modeling of signal transduction – a modular approach
Koschorreck, Markus; Conzelmann, Holger; Ebert, Sybille; Ederer, Michael; Gilles, Ernst Dieter
2007-01-01
Background Combinatorial complexity is a challenging problem in detailed and mechanistic mathematical modeling of signal transduction. This subject has been discussed intensively and a lot of progress has been made within the last few years. A software tool (BioNetGen) was developed which allows an automatic rule-based set-up of mechanistic model equations. In many cases these models can be reduced by an exact domain-oriented lumping technique. However, the resulting models can still consist of a very large number of differential equations. Results We introduce a new reduction technique, which allows building modularized and highly reduced models. Compared to existing approaches further reduction of signal transduction networks is possible. The method also provides a new modularization criterion, which allows to dissect the model into smaller modules that are called layers and can be modeled independently. Hallmarks of the approach are conservation relations within each layer and connection of layers by signal flows instead of mass flows. The reduced model can be formulated directly without previous generation of detailed model equations. It can be understood and interpreted intuitively, as model variables are macroscopic quantities that are converted by rates following simple kinetics. The proposed technique is applicable without using complex mathematical tools and even without detailed knowledge of the mathematical background. However, we provide a detailed mathematical analysis to show performance and limitations of the method. For physiologically relevant parameter domains the transient as well as the stationary errors caused by the reduction are negligible. Conclusion The new layer based reduced modeling method allows building modularized and strongly reduced models of signal transduction networks. Reduced model equations can be directly formulated and are intuitively interpretable. Additionally, the method provides very good approximations especially for
Error Estimation for Reduced Order Models of Dynamical systems
Homescu, C; Petzold, L R; Serban, R
2003-12-16
The use of reduced order models to describe a dynamical system is pervasive in science and engineering. Often these models are used without an estimate of their error or range of validity. In this paper we consider dynamical systems and reduced models built using proper orthogonal decomposition. We show how to compute estimates and bounds for these errors, by a combination of the small sample statistical condition estimation method and of error estimation using the adjoint method. More importantly, the proposed approach allows the assessment of so-called regions of validity for reduced models, i.e., ranges of perturbations in the original system over which the reduced model is still appropriate. This question is particularly important for applications in which reduced models are used not just to approximate the solution to the system that provided the data used in constructing the reduced model, but rather to approximate the solution of systems perturbed from the original one. Numerical examples validate our approach: the error norm estimates approximate well the forward error while the derived bounds are within an order of magnitude.
The Reduced RUM as a Logit Model: Parameterization and Constraints.
Chiu, Chia-Yi; Köhn, Hans-Friedrich
2016-06-01
Cognitive diagnosis models (CDMs) for educational assessment are constrained latent class models. Examinees are assigned to classes of intellectual proficiency defined in terms of cognitive skills called attributes, which an examinee may or may not have mastered. The Reduced Reparameterized Unified Model (Reduced RUM) has received considerable attention among psychometricians. Markov Chain Monte Carlo (MCMC) or Expectation Maximization (EM) are typically used for estimating the Reduced RUM. Commercial implementations of the EM algorithm are available in the latent class analysis (LCA) routines of Latent GOLD and Mplus, for example. Fitting the Reduced RUM with an LCA routine requires that it be reparameterized as a logit model, with constraints imposed on the parameters. For models involving two attributes, these have been worked out. However, for models involving more than two attributes, the parameterization and the constraints are nontrivial and currently unknown. In this article, the general parameterization of the Reduced RUM as a logit model involving any number of attributes and the associated parameter constraints are derived. As a practical illustration, the LCA routine in Mplus is used for fitting the Reduced RUM to two synthetic data sets and to a real-world data set; for comparison, the results obtained by using the MCMC implementation in OpenBUGS are also provided. PMID:25838247
Floquet Weyl phases in a three-dimensional network model
NASA Astrophysics Data System (ADS)
Wang, Hailong; Zhou, Longwen; Chong, Y. D.
2016-04-01
We study the topological properties of three-dimensional (3D) Floquet band structures, which are defined using unitary evolution matrices rather than Hamiltonians. Previously, two-dimensional band structures of this sort have been shown to exhibit anomalous topological behaviors, such as topologically nontrivial zero-Chern-number phases. We show that the band structure of a 3D network model can exhibit Weyl phases, which feature "Fermi arc" surface states like those found in Weyl semimetals. Tuning the network's coupling parameters can induce transitions between Weyl phases and various topologically distinct gapped phases. We identify a connection between the topology of the gapped phases and the topology of Weyl point trajectories in k space. The model is feasible to realize in custom electromagnetic networks, where the Weyl point trajectories can be probed by scattering parameter measurements.
Integrating a developmental perspective in dimensional models of personality disorders.
De Clercq, Barbara; De Fruyt, Filip; Widiger, Thomas A
2009-03-01
There is growing evidence that manifestations of personality pathology are traceable in early years of life. Nevertheless, the existing diagnostic nomenclature contains little recognition of childhood antecedents of adult personality disorders (PD). The current paper suggests that these childhood antecedents are more readily recognized to the extent that the personality disorders are themselves understood as configurations of extreme Five-Factor Model personality traits. From this dimensional perspective, we propose the Dimensional Personality Symptom Itempool (DIPSI), an age-specific model for describing child and adolescent trait pathology. We suggest that the DIPSI represents a comprehensive conceptualization of childhood PD antecedents and may contribute to the understanding of the developmental course of personality disorders. Issues and concerns to further elaborate this life-span perspective on personality disorders are discussed. PMID:19167138
Modeling and Experimentation on a Two-dimensional Synthetic jet
NASA Astrophysics Data System (ADS)
Wang, Yunfei; Mohseni, Kamran
2007-11-01
Hotwire anemometry is employed in order to investigate the spatial development of a two-dimensional synthetic jet. Flow velocity at various locations downstream from a slit is measured. A self similar behavior in the measured velocity is observed. An analytical model for a steady synthetic jet is developed that accurately matches the experimental data. As observed by other groups, the two-dimensional synthetic jet spreads at a rate higher than a continuous jet. This rate is accurately predicted by our model. It is identified that the main difference between a continuous jet and a synthetic jet is the higher value of the virtual viscosity (eddy viscosity) in a synthetic jet. This is attributed to the pulsate nature of a synthetic jet that makes it more susceptible to turbulence.
HIGH DIMENSIONAL COVARIANCE MATRIX ESTIMATION IN APPROXIMATE FACTOR MODELS
Fan, Jianqing; Liao, Yuan; Mincheva, Martina
2012-01-01
The variance covariance matrix plays a central role in the inferential theories of high dimensional factor models in finance and economics. Popular regularization methods of directly exploiting sparsity are not directly applicable to many financial problems. Classical methods of estimating the covariance matrices are based on the strict factor models, assuming independent idiosyncratic components. This assumption, however, is restrictive in practical applications. By assuming sparse error covariance matrix, we allow the presence of the cross-sectional correlation even after taking out common factors, and it enables us to combine the merits of both methods. We estimate the sparse covariance using the adaptive thresholding technique as in Cai and Liu (2011), taking into account the fact that direct observations of the idiosyncratic components are unavailable. The impact of high dimensionality on the covariance matrix estimation based on the factor structure is then studied. PMID:22661790
Cloud pumping in a one-dimensional photochemical model
NASA Technical Reports Server (NTRS)
Costen, Robert C.; Tennille, Geoffrey M.; Levine, Joel S.
1988-01-01
Cloud pumping data based on tropical maritime updraft statistics are incorporated in a one-dimensional steady-state eddy diffusive photochemical model of the troposphere. It is suggested that regions with weaker convection, such as the midlatitudes, may also experience substantial effects from cloud pumping. The direct effects of cloud pumping on CO were found to be more significant than implied by sensitivity studies. The (CH3)2S profile computed with cloud pumping agrees well with previous data.
Three-dimensional thermal modeling of electric vehicle batteries
NASA Astrophysics Data System (ADS)
Lee, J.; Choi, K. W.; Yao, N. P.; Christianson, C. C.
1985-10-01
A generic three-dimensional thermal model was developed for analyzing the thermal behavior of electric-vehicle batteries. The model calculates temperature distribution and excursion of a battery during discharge, change, and open circuit. The model takes into account the effects of heat generation, internal conduction and convection, and external heat dissipation on the temperature distribution in a battery. The three-dimensional feature of the model permits incorporation of various asymmetric boundary conditions; thus the effects of cell orientation and packaging on thermal behavior can be analyzed for a multiple-cell battery pack. Various modes of boundary heat transfer such as radiation, insulation, and natural and forced convections were also included in the model. Model predictions agreed well with the temperature distributions measured in nickel/iron batteries. Application of the thermal model to a closely packed 330-Ah module of five cells indicated that excessive temperature rise will occur upon discharge. Forced air convection is not effective for cooling the module.
An algebraic turbulence model for three-dimensional viscous flows
NASA Technical Reports Server (NTRS)
Chima, R. V.; Giel, P. W.; Boyle, R. J.
1993-01-01
An algebraic turbulence model is proposed for use with three-dimensional Navier-Stokes analyses. It incorporates features of both the Baldwin-Lomax and Cebeci-Smith models. The Baldwin-Lomax model uses the maximum of a function f(y) to determine length and velocity scales. An analysis of the Baldwin-Lomax model shows that f(y) can have a spurious maximum close to the wall, causing numerical problems and non-physical results. The proposed model uses integral relations to determine delta(*) u(sub e) and delta used in the Cebeci-Smith mode. It eliminates a constant in the Baldwin-Lomax model and determines the two remaining constants by comparison to the Cebeci-Smith formulation. Pressure gradient effects, a new wake model, and the implementation of these features in a three-dimensional Navier-Stokes code are also described. Results are shown for a flat plate boundary layer, an annular turbine cascade, and endwall heat transfer in a linear turbine cascade. The heat transfer results agree well with experimental data which shows large variations in endwall Stanton number contours with Reynolds number.
On multiscale approaches to three-dimensional modelling of morphogenesis
Chaturvedi, R; Huang, C; Kazmierczak, B; Schneider, T; Izaguirre, J.A; Glimm, T; Hentschel, H.G.E; Glazier, J.A; Newman, S.A; Alber, M.S
2005-01-01
In this paper we present the foundation of a unified, object-oriented, three-dimensional biomodelling environment, which allows us to integrate multiple submodels at scales from subcellular to those of tissues and organs. Our current implementation combines a modified discrete model from statistical mechanics, the Cellular Potts Model, with a continuum reaction–diffusion model and a state automaton with well-defined conditions for cell differentiation transitions to model genetic regulation. This environment allows us to rapidly and compactly create computational models of a class of complex-developmental phenomena. To illustrate model development, we simulate a simplified version of the formation of the skeletal pattern in a growing embryonic vertebrate limb. PMID:16849182
Song, Hongwei; Lu, Yunpeng; Li, Jun; Yang, Minghui; Guo, Hua
2016-04-28
An initial state selected time-dependent wave packet method is applied to study the dynamics of the OH + CHD3 reaction with a six-dimensional model on a newly developed full-dimensional ab initio potential energy surface (PES). This quantum dynamical (QD) study is complemented by full-dimensional quasi-classical trajectory (QCT) calculations on the same PES. The QD results indicate that both translational energy and the excitation of the CH stretching mode significantly promote the reaction while the excitation of the umbrella mode has a negligible effect on the reactivity. For this early barrier reaction, interestingly, the CH stretching mode is more effective than translational energy in promoting the reaction except at very low collision energies. These QD observations are supported by QCT results. The higher efficacy of the CH stretching model in promoting this early barrier reaction is inconsistent with the prediction of the naively extended Polanyi's rules, but can be rationalized by the recently proposed sudden vector projection model. PMID:27131546
NASA Astrophysics Data System (ADS)
Song, Hongwei; Lu, Yunpeng; Li, Jun; Yang, Minghui; Guo, Hua
2016-04-01
An initial state selected time-dependent wave packet method is applied to study the dynamics of the OH + CHD3 reaction with a six-dimensional model on a newly developed full-dimensional ab initio potential energy surface (PES). This quantum dynamical (QD) study is complemented by full-dimensional quasi-classical trajectory (QCT) calculations on the same PES. The QD results indicate that both translational energy and the excitation of the CH stretching mode significantly promote the reaction while the excitation of the umbrella mode has a negligible effect on the reactivity. For this early barrier reaction, interestingly, the CH stretching mode is more effective than translational energy in promoting the reaction except at very low collision energies. These QD observations are supported by QCT results. The higher efficacy of the CH stretching model in promoting this early barrier reaction is inconsistent with the prediction of the naively extended Polanyi's rules, but can be rationalized by the recently proposed sudden vector projection model.
Cheviakov, A F; Ganghoffer, J-F
2016-05-01
The framework of incompressible nonlinear hyperelasticity and viscoelasticity is applied to the derivation of one-dimensional models of nonlinear wave propagation in fiber-reinforced elastic solids. Equivalence transformations are used to simplify the resulting wave equations and to reduce the number of parameters. Local conservation laws and global conserved quantities of the models are systematically computed and discussed, along with other related mathematical properties. Sample numerical solutions are presented. The models considered in the paper are appropriate for the mathematical description of certain aspects of the behavior of biological membranes and similar structures. PMID:26410196
Ion Binding Sites and their Representations by Reduced Models
Roux, Benoît
2013-01-01
The binding of small metal ions to complex macromolecular structures is typically dominated by strong local interactions of the ion with its nearest ligands. Progress in understanding the molecular determinants of ion selectivity can often be achieved by considering simplified reduced models comprised of only the most important ion-coordinating ligands. Although the main ingredients underlying simplified reduced models are intuitively clear, a formal statistical mechanical treatment is nonetheless necessary in order to draw meaningful conclusions about complex macromolecular systems. By construction, reduced models only treat the ion and the nearest coordinating ligands explicitly. The influence of the missing atoms from the protein or the solvent is incorporated indirectly. Quasi-chemical theory offers one example of how to carry out such a separation in the case of ion solvation in bulk liquids, and in several ways, a statistical mechanical formulation of reduced binding site models for macromolecules is expected to follow a similar route. However, there are also important differences when the ion-coordinating moieties are not solvent molecules from a bulk phase, but are molecular ligands covalently bonded to a macromolecular structure. Here, a statistical mechanical formulation of reduced binding site models is elaborated to address these issues. The formulation provides a useful framework to construct reduced binding site models, and define the average effect from the surroundings on the ion and the nearest coordinating ligands. PMID:22494321
One-dimensional GIS-based model compared with a two-dimensional model in urban floods simulation.
Lhomme, J; Bouvier, C; Mignot, E; Paquier, A
2006-01-01
A GIS-based one-dimensional flood simulation model is presented and applied to the centre of the city of Nîmes (Gard, France), for mapping flow depths or velocities in the streets network. The geometry of the one-dimensional elements is derived from the Digital Elevation Model (DEM). The flow is routed from one element to the next using the kinematic wave approximation. At the crossroads, the flows in the downstream branches are computed using a conceptual scheme. This scheme was previously designed to fit Y-shaped pipes junctions, and has been modified here to fit X-shaped crossroads. The results were compared with the results of a two-dimensional hydrodynamic model based on the full shallow water equations. The comparison shows that good agreements can be found in the steepest streets of the study zone, but differences may be important in the other streets. Some reasons that can explain the differences between the two models are given and some research possibilities are proposed. PMID:17120637
Concentration data and dimensionality in groundwater models: evaluation using inverse modelling
Barlebo, H.C.; Hill, M.C.; Rosbjerg, D.; Jensen, K.H.
1998-01-01
A three-dimensional inverse groundwater flow and transport model that fits hydraulic-head and concentration data simultaneously using nonlinear regression is presented and applied to a layered sand and silt groundwater system beneath the Grindsted Landfill in Denmark. The aquifer is composed of rather homogeneous hydrogeologic layers. Two issues common to groundwater flow and transport modelling are investigated: 1) The accuracy of simulated concentrations in the case of calibration with head data alone; and 2) The advantages and disadvantages of using a two-dimensional cross-sectional model instead of a three-dimensional model to simulate contaminant transport when the source is at the land surface. Results show that using only hydraulic heads in the nonlinear regression produces a simulated plume that is profoundly different from what is obtained in a calibration using both hydraulic-head and concentration data. The present study provides a well-documented example of the differences that can occur. Representing the system as a two-dimensional cross-section obviously omits some of the system dynamics. It was, however, possible to obtain a simulated plume cross-section that matched the actual plume cross-section well. The two-dimensional model execution times were about a seventh of those for the three-dimensional model, but some difficulties were encountered in representing the spatially variable source concentrations and less precise simulated concentrations were calculated by the two-dimensional model compared to the three-dimensional model. Summed up, the present study indicates that three dimensional modelling using both hydraulic heads and concentrations in the calibration should be preferred in the considered type of transport studies.
Rotational excitation of H2O by para-H2 from an adiabatically reduced dimensional potential
NASA Astrophysics Data System (ADS)
Scribano, Yohann; Faure, Alexandre; Lauvergnat, David
2012-03-01
Cross sections and rate coefficients for low lying rotational transitions in H2O colliding with para-hydrogen pH2 are computed using an adiabatic approximation which reduces the dimensional dynamics from a 5D to a 3D problem. Calculations have been performed at the close-coupling level using the recent potential of Valiron et al. [J. Chem. Phys. 129, 134306 (2008), 10.1063/1.2988314]. A good agreement is found between the reduced adiabatic calculations and the 5D exact calculations, with an impressive time saving and memory gain. This adiabatic reduction of dimensionality seems very promising for scattering studies involving the excitation of a heavy target molecule by a light molecular projectile.
Signatures from an extra-dimensional seesaw model
Blennow, Mattias; Melbeus, Henrik; Ohlsson, Tommy; Zhang He
2010-08-15
We study the generation of small neutrino masses in an extra-dimensional model, where singlet fermions are allowed to propagate in the extra dimension, while the standard model particles are confined to a brane. Motivated by the fact that extra-dimensional models are nonrenormalizable, we truncate the Kaluza-Klein towers at a maximal Kaluza-Klein number. This truncation, together with the structure of the bulk Majorana mass term, motivated by the Sherk-Schwarz mechanism, implies that the Kaluza-Klein modes of the singlet fermions pair to form Dirac fermions, except for a number of unpaired Majorana fermions at the top of each tower. These heavy Majorana fermions are the only sources of lepton number breaking in the model, and similarly to the type-I seesaw mechanism, they naturally generate small masses for the left-handed neutrinos. The lower Kaluza-Klein modes mix with the light neutrinos, and the mixing effects are not suppressed with respect to the light-neutrino masses. Compared to conventional fermionic seesaw models, such mixing can be more significant. We study the signals of this model at the Large Hadron Collider, and find that the current low-energy bounds on the nonunitarity of the leptonic mixing matrix are strong enough to exclude an observation.
Three-dimensional Model of Tissue and Heavy Ions Effects
NASA Technical Reports Server (NTRS)
Ponomarev, Artem L.; Sundaresan, Alamelu; Huff, Janice L.; Cucinotta, Francis A.
2007-01-01
A three-dimensional tissue model was incorporated into a new Monte Carlo algorithm that simulates passage of heavy ions in a tissue box . The tissue box was given as a realistic model of tissue based on confocal microscopy images. The action of heavy ions on the cellular matrix for 2- or 3-dimensional cases was simulated. Cells were modeled as a cell culture monolayer in one example, where the data were taken directly from microscopy (2-d cell matrix), and as a multi-layer obtained from confocal microscopy (3-d case). Image segmentation was used to identify cells with precise areas/volumes in an irradiated cell culture monolayer, and slices of tissue with many cell layers. The cells were then inserted into the model box of the simulated physical space pixel by pixel. In the case of modeled tissues (3-d), the tissue box had periodic boundary conditions imposed, which extrapolates the technique to macroscopic volumes of tissue. For the real tissue (3-d), specific spatial patterns for cell apoptosis and necrosis are expected. The cell patterns were modeled based on action cross sections for apoptosis and necrosis estimated from current experimental data. A spatial correlation function indicating a higher spatial concentration of damaged cells from heavy ions relative to the low-LET radiation cell damage pattern is presented. The spatial correlation effects among necrotic cells can help studying microlesions in organs, and probable effects of directionality of heavy ion radiation on epithelium and endothelium.
Projection-Based Reduced Order Modeling for Spacecraft Thermal Analysis
NASA Technical Reports Server (NTRS)
Qian, Jing; Wang, Yi; Song, Hongjun; Pant, Kapil; Peabody, Hume; Ku, Jentung; Butler, Charles D.
2015-01-01
This paper presents a mathematically rigorous, subspace projection-based reduced order modeling (ROM) methodology and an integrated framework to automatically generate reduced order models for spacecraft thermal analysis. Two key steps in the reduced order modeling procedure are described: (1) the acquisition of a full-scale spacecraft model in the ordinary differential equation (ODE) and differential algebraic equation (DAE) form to resolve its dynamic thermal behavior; and (2) the ROM to markedly reduce the dimension of the full-scale model. Specifically, proper orthogonal decomposition (POD) in conjunction with discrete empirical interpolation method (DEIM) and trajectory piece-wise linear (TPWL) methods are developed to address the strong nonlinear thermal effects due to coupled conductive and radiative heat transfer in the spacecraft environment. Case studies using NASA-relevant satellite models are undertaken to verify the capability and to assess the computational performance of the ROM technique in terms of speed-up and error relative to the full-scale model. ROM exhibits excellent agreement in spatiotemporal thermal profiles (<0.5% relative error in pertinent time scales) along with salient computational acceleration (up to two orders of magnitude speed-up) over the full-scale analysis. These findings establish the feasibility of ROM to perform rational and computationally affordable thermal analysis, develop reliable thermal control strategies for spacecraft, and greatly reduce the development cycle times and costs.
Nonparametric Independence Screening in Sparse Ultra-High Dimensional Additive Models.
Fan, Jianqing; Feng, Yang; Song, Rui
2011-06-01
A variable screening procedure via correlation learning was proposed in Fan and Lv (2008) to reduce dimensionality in sparse ultra-high dimensional models. Even when the true model is linear, the marginal regression can be highly nonlinear. To address this issue, we further extend the correlation learning to marginal nonparametric learning. Our nonparametric independence screening is called NIS, a specific member of the sure independence screening. Several closely related variable screening procedures are proposed. Under general nonparametric models, it is shown that under some mild technical conditions, the proposed independence screening methods enjoy a sure screening property. The extent to which the dimensionality can be reduced by independence screening is also explicitly quantified. As a methodological extension, a data-driven thresholding and an iterative nonparametric independence screening (INIS) are also proposed to enhance the finite sample performance for fitting sparse additive models. The simulation results and a real data analysis demonstrate that the proposed procedure works well with moderate sample size and large dimension and performs better than competing methods. PMID:22279246
Three-dimensional nanojunction device models for photovoltaics
NASA Astrophysics Data System (ADS)
Wangperawong, Artit; Bent, Stacey F.
2011-06-01
A model is developed to describe the behavior of three-dimensionally nanostructured photovoltaic devices, distinguishing between isolated radial pn junctions and interdigitated pn junctions. We examine two specific interdigitated architectures, the point-contact nanojunction and the extended nanojunction, which are most relevant to experimental devices reported to date but have yet to be distinguished in the field. The model is also applied to polycrystalline CdTe devices with inverted grain boundaries. We demonstrate that for CdTe/CdS solar cells using low-quality materials, the efficiency of the extended nanojunction geometry is superior to other designs considered.
Three Dimensional Modeling of an MRI Actuated Steerable Catheter System
Liu, Taoming; Çavuşoğlu, M. Cenk
2014-01-01
This paper presents the three dimensional kinematic modeling of a novel steerable robotic ablation catheter system. The catheter, embedded with a set of current-carrying micro-coils, is actuated by the magnetic forces generated by the magnetic field of the MRI scanner. This paper develops a 3D model of the MRI actuated steerable catheter system by using finite differences approach. For each finite segment, a quasi-static torque-deflection equilibrium equation is calculated using beam theory. By using the deflection displacements and torsion angles, the kinematic modeling of the catheter system is derived. The proposed models are evaluated by comparing the simulation results of the proposed model with the experimental results of a proof-of-concept prototype. PMID:25328804
Two-Dimensional Quantum Model of a Nanotransistor
NASA Technical Reports Server (NTRS)
Govindan, T. R.; Biegel, B.; Svizhenko, A.; Anantram, M. P.
2009-01-01
A mathematical model, and software to implement the model, have been devised to enable numerical simulation of the transport of electric charge in, and the resulting electrical performance characteristics of, a nanotransistor [in particular, a metal oxide/semiconductor field-effect transistor (MOSFET) having a channel length of the order of tens of nanometers] in which the overall device geometry, including the doping profiles and the injection of charge from the source, gate, and drain contacts, are approximated as being two-dimensional. The model and software constitute a computational framework for quantitatively exploring such device-physics issues as those of source-drain and gate leakage currents, drain-induced barrier lowering, and threshold voltage shift due to quantization. The model and software can also be used as means of studying the accuracy of quantum corrections to other semiclassical models.
Three Dimensional Modeling of an MRI Actuated Steerable Catheter System.
Liu, Taoming; Cavuşoğlu, M Cenk
2014-01-01
This paper presents the three dimensional kinematic modeling of a novel steerable robotic ablation catheter system. The catheter, embedded with a set of current-carrying micro-coils, is actuated by the magnetic forces generated by the magnetic field of the MRI scanner. This paper develops a 3D model of the MRI actuated steerable catheter system by using finite differences approach. For each finite segment, a quasi-static torque-deflection equilibrium equation is calculated using beam theory. By using the deflection displacements and torsion angles, the kinematic modeling of the catheter system is derived. The proposed models are evaluated by comparing the simulation results of the proposed model with the experimental results of a proof-of-concept prototype. PMID:25328804
Statistical validation of high-dimensional models of growing networks
NASA Astrophysics Data System (ADS)
Medo, Matúš
2014-03-01
The abundance of models of complex networks and the current insufficient validation standards make it difficult to judge which models are strongly supported by data and which are not. We focus here on likelihood maximization methods for models of growing networks with many parameters and compare their performance on artificial and real datasets. While high dimensionality of the parameter space harms the performance of direct likelihood maximization on artificial data, this can be improved by introducing a suitable penalization term. Likelihood maximization on real data shows that the presented approach is able to discriminate among available network models. To make large-scale datasets accessible to this kind of analysis, we propose a subset sampling technique and show that it yields substantial model evidence in a fraction of time necessary for the analysis of the complete data.
A Multi-Dimensional Classification Model for Scientific Workflow Characteristics
Ramakrishnan, Lavanya; Plale, Beth
2010-04-05
Workflows have been used to model repeatable tasks or operations in manufacturing, business process, and software. In recent years, workflows are increasingly used for orchestration of science discovery tasks that use distributed resources and web services environments through resource models such as grid and cloud computing. Workflows have disparate re uirements and constraints that affects how they might be managed in distributed environments. In this paper, we present a multi-dimensional classification model illustrated by workflow examples obtained through a survey of scientists from different domains including bioinformatics and biomedical, weather and ocean modeling, astronomy detailing their data and computational requirements. The survey results and classification model contribute to the high level understandingof scientific workflows.
Controller design via structural reduced modeling by FETM
NASA Technical Reports Server (NTRS)
Yousuff, Ajmal
1987-01-01
The Finite Element-Transfer Matrix (FETM) method has been developed to reduce the computations involved in analysis of structures. This widely accepted method, however, has certain limitations, and does not address the issues of control design. To overcome these, a modification of the FETM method has been developed. The new method easily produces reduced models tailored toward subsequent control design. Other features of this method are its ability to: (1) extract open loop frequencies and mode shapes with less computations, (2) overcome limitations of the original FETM method, and (3) simplify the design procedures for output feedback, constrained compensation, and decentralized control. This report presents the development of the new method, generation of reduced models by this method, their properties, and the role of these reduced models in control design. Examples are included to illustrate the methodology.
NASA Technical Reports Server (NTRS)
Whitten, R. C.; Borucki, W. J.; Watson, V. R.; Shimazaki, T.; Woodward, H. T.; Riegel, C. A.; Capone, L. A.; Becker, T.
1977-01-01
The two-dimensional model of stratospheric constituents is presented in detail. The derivation of pertinent transport parameters and the numerical solution of the species continuity equations, including a technique for treating the stiff differential equations that represent the chemical kinetic terms, and appropriate methods for simulating the diurnal variations of the solar zenith angle and species concentrations are discussed. Predicted distributions of tracer constituents (ozone, carbon 14, nitric acid) are compared with observed distributions.
Three-dimensional face model reproduction method using multiview images
NASA Astrophysics Data System (ADS)
Nagashima, Yoshio; Agawa, Hiroshi; Kishino, Fumio
1991-11-01
This paper describes a method of reproducing three-dimensional face models using multi-view images for a virtual space teleconferencing system that achieves a realistic visual presence for teleconferencing. The goal of this research, as an integral component of a virtual space teleconferencing system, is to generate a three-dimensional face model from facial images, synthesize images of the model virtually viewed from different angles, and with natural shadow to suit the lighting conditions of the virtual space. The proposed method is as follows: first, front and side view images of the human face are taken by TV cameras. The 3D data of facial feature points are obtained from front- and side-views by an image processing technique based on the color, shape, and correlation of face components. Using these 3D data, the prepared base face models, representing typical Japanese male and female faces, are modified to approximate the input facial image. The personal face model, representing the individual character, is then reproduced. Next, an oblique view image is taken by TV camera. The feature points of the oblique view image are extracted using the same image processing technique. A more precise personal model is reproduced by fitting the boundary of the personal face model to the boundary of the oblique view image. The modified boundary of the personal face model is determined by using face direction, namely rotation angle, which is detected based on the extracted feature points. After the 3D model is established, the new images are synthesized by mapping facial texture onto the model.
Reduced Auger recombination in single CdSe/CdS nanorods by one-dimensional electron delocalization.
Rabouw, Freddy T; Lunnemann, Per; van Dijk-Moes, Relinde J A; Frimmer, Martin; Pietra, Francesca; Koenderink, A Femius; Vanmaekelbergh, Daniël
2013-10-01
Progress to reduce nonradiative Auger decay in colloidal nanocrystals has recently been made by growing thick shells. However, the physics of Auger suppression is not yet fully understood. Here, we examine the dynamics and spectral characteristics of single CdSe-dot-in-CdS-rod nanocrystals. These exhibit blinking due to charging/discharging, as well as trap-related blinking. We show that one-dimensional electron delocalization into the rod-shaped shell can be as effective as a thick spherical shell at reducing Auger recombination of the negative trion state. PMID:24010869
ERIC Educational Resources Information Center
Walton, Kate E.; Ormel, Johan; Krueger, Robert F.
2011-01-01
Researchers have recognized the importance of developing an accurate classification system for externalizing disorders, though much of this work has been framed by a priori preferences for categorical vs. dimensional constructs. Newer statistical technologies now allow categorical and dimensional models of psychopathology to be compared…
Modeling of three-dimensional mixing and reacting ducted flows
NASA Technical Reports Server (NTRS)
Zelazny, S. W.; Baker, A. J.; Rushmore, W. L.
1976-01-01
A computer code, based upon a finite element solution algorithm, was developed to solve the governing equations for three-dimensional, reacting boundary region, and constant area ducted flow fields. Effective diffusion coefficients are employed to allow analyses of turbulent, transitional or laminar flows. The code was used to investigate mixing and reacting hydrogen jets injected from multiple orifices, transverse and parallel to a supersonic air stream. Computational results provide a three-dimensional description of velocity, temperature, and species-concentration fields downstream of injection. Experimental data for eight cases covering different injection conditions and geometries were modeled using mixing length theory (MLT). These results were used as a baseline for examining the relative merits of other mixing models. Calculations were made using a two-equation turbulence model (k+d) and comparisons were made between experiment and mixing length theory predictions. The k+d model shows only a slight improvement in predictive capability over MLT. Results of an examination of the effect of tensorial transport coefficients on mass and momentum field distribution are also presented. Solutions demonstrating the ability of the code to model ducted flows and parallel strut injection are presented and discussed.
Reducing Redundancies in Reconfigurable Antenna Structures Using Graph Models
Costantine, Joseph; al-Saffar, Sinan; Christodoulou, Christos G.; Abdallah, Chaouki T.
2010-04-23
Many reconfigurable antennas have redundant components in their structures. In this paper we present an approach for reducing redundancies in reconfigurable antenna structures using graph models. We study reconfigurable antennas, which are grouped, categorized and modeled according to a set of proposed graph rules. Several examples are presented and discussed to demonstrate the validity of this new technique.
REDUCING THE DIMENSIONALITY OF DATA: LOCALLY LINEAR EMBEDDING OF SLOAN GALAXY SPECTRA
Vanderplas, Jake; Connolly, Andrew
2009-11-15
We introduce locally linear embedding (LLE) to the astronomical community as a new classification technique, using Sloan Digital Sky Survey spectra as an example data set. LLE is a nonlinear dimensionality reduction technique that has been studied in the context of computer perception. We compare the performance of LLE to well-known spectral classification techniques, e.g., principal component analysis and line-ratio diagnostics. We find that LLE combines the strengths of both methods in a single, coherent technique, and leads to improved classification of emission-line spectra at a relatively small computational cost. We also present a data subsampling technique that preserves local information content, and proves effective for creating small, efficient training samples from large, high-dimensional data sets. Software used in this LLE-based classification is made available.
Goldilocks models of higher-dimensional inflation (including modulus stabilization)
NASA Astrophysics Data System (ADS)
Burgess, C. P.; Enns, Jared J. H.; Hayman, Peter; Patil, Subodh P.
2016-08-01
We explore the mechanics of inflation within simplified extra-dimensional models involving an inflaton interacting with the Einstein-Maxwell system in two extra dimensions. The models are Goldilocks-like inasmuch as they are just complicated enough to include a mechanism to stabilize the extra-dimensional size (or modulus), yet simple enough to solve explicitly the full extra-dimensional field equations using only simple tools. The solutions are not restricted to the effective 4D regime with H ll mKK (the latter referring to the characteristic mass splitting of the Kaluza-Klein excitations) because the full extra-dimensional Einstein equations are solved. This allows an exploration of inflationary physics in a controlled calculational regime away from the usual four-dimensional lamp-post. The inclusion of modulus stabilization is important because experience with string models teaches that this is usually what makes models fail: stabilization energies easily dominate the shallow potentials required by slow roll and so open up directions to evolve that are steeper than those of the putative inflationary direction. We explore (numerically and analytically) three representative kinds of inflationary scenarios within this simple setup. In one the radion is trapped in an inflaton-dependent local minimum whose non-zero energy drives inflation. Inflation ends as this energy relaxes to zero when the inflaton finds its own minimum. The other two involve power-law scaling solutions during inflation. One of these is a dynamical attractor whose features are relatively insensitive to initial conditions but whose slow-roll parameters cannot be arbitrarily small; the other is not an attractor but can roll much more slowly, until eventually transitioning to the attractor. The scaling solutions can satisfy H > mKK, but when they do standard 4D fluctuation calculations need not apply. When in a 4D regime the solutions predict η simeq 0 and so r simeq 0.11 when ns simeq 0.96 and so
A reduced dimensionality QM study of the BO+H 2→HBO+H reaction: tunneling in polyatomic reactions
NASA Astrophysics Data System (ADS)
Szichman, H.; Gilibert, M.; Albertí, M.; Giménez, X.; Aguilar, A.
2002-02-01
We report in the present Letter a three-dimensional, quantum mechanical, infinite order sudden approximation (IOSA) study of the H 2+BO combustion reaction using a recently reported, six-dimensional potential energy surface (PES) for the adiabatic ground electronic state H 2BO. Total reactive probabilities, cross-sections and rate constants are thus computed. These last ones compare relatively well with the experimental data, the agreement being much more improved with regard to previous quasi-classical trajectories (QCT) predictions. Furthermore, it is found that computed reactive cross-sections by both models compare well only beyond a translational energy of 0.8 eV.
One-dimensional Hubbard-Luttinger model for carbon nanotubes
NASA Astrophysics Data System (ADS)
Ishkhanyan, H. A.; Krainov, V. P.
2015-06-01
A Hubbard-Luttinger model is developed for qualitative description of one-dimensional motion of interacting Pi-conductivity-electrons in carbon single-wall nanotubes at low temperatures. The low-lying excitations in one-dimensional electron gas are described in terms of interacting bosons. The Bogolyubov transformation allows one to describe the system as an ensemble of non-interacting quasi-bosons. Operators of Fermi excitations and Green functions of fermions are introduced. The electric current is derived as a function of potential difference on the contact between a nanotube and a normal metal. Deviations from Ohm law produced by electron-electron short-range repulsion as well as by the transverse quantization in single-wall nanotubes are discussed. The results are compared with experimental data.
Physical lumping methods for developing linear reduced models for high speed propulsion systems
NASA Technical Reports Server (NTRS)
Immel, S. M.; Hartley, Tom T.; Deabreu-Garcia, J. Alex
1991-01-01
In gasdynamic systems, information travels in one direction for supersonic flow and in both directions for subsonic flow. A shock occurs at the transition from supersonic to subsonic flow. Thus, to simulate these systems, any simulation method implemented for the quasi-one-dimensional Euler equations must have the ability to capture the shock. In this paper, a technique combining both backward and central differencing is presented. The equations are subsequently linearized about an operating point and formulated into a linear state space model. After proper implementation of the boundary conditions, the model order is reduced from 123 to less than 10 using the Schur method of balancing. Simulations comparing frequency and step response of the reduced order model and the original system models are presented.
A Reduced Grid Method for a Parallel Global Ocean General Circulation Model
Wickett, M.E.
1999-12-01
A limitation of many explicit finite-difference global climate models is the timestep restriction caused by the decrease in cell size associated with the convergence of meridians near the poles. A computational grid in which the number of cells in the longitudinal direction is reduced toward high-latitudes, keeping the longitudinal width of the resulting cells as uniform as possible and increasing the allowable timestep, is applied to a three-dimensional primitive equation ocean-climate model. This ''reduced'' grid consists of subgrids which interact at interfaces along their northern and southern boundaries, where the resolution changes by a factor of three. Algorithms are developed to extend the finite difference techniques to this interface, focusing on the conservation required to perform long time integrations, while preserving the staggered spatial arrangement of variables and the numerics used on subgrids. The reduced grid eliminates the common alternative of filtering high-frequency modes from the solution at high-latitudes to allow a larger timestep and reduces execution time per model step by roughly 20 percent. The reduced grid model is implemented for parallel computer architectures with two-dimensional domain decomposition and message passing, with speedup results comparable to those of the original model. Both idealized and realistic model runs are presented to show the effect of the interface numerics on the model solution. First, a rectangular, mid-latitude, at-bottomed basin with vertical walls at the boundaries is driven only by surface wind stress to compare three resolutions of the standard grid to reduced grid cases which use various interface conditions. Next, a similar basin with wind stress, heat, and fresh water forcing is used to compare the results of a reduced grid with those of a standard grid result while exercising the full set of model equations. Finally, global model runs, with topography, forcing, and physical parameters similar to
A three dimensional heart model based on anatomically aligned trusses.
Witman, S; Gefen, A; Barnea, O
2007-01-01
A new approach for modeling and simulating the contraction of the heart is presented. The model is based on anatomical images and accounts for cardiac muscle fibers and their orientation. The heart is modeled as a structure built of trusses, each representing a group of myofibers with calculated deformations using matrix structural analysis. Three elements are represented; these are the contractile cardiac muscle, the elastic passive collagen, and intracardiac blood interacting with the heart's preload and afterload. Incompressibility of each element is preserved. The conduction system is simulated in the model by transferring the activating signal from one element to another or by Purkinje fibers activation. The method was demonstrated using a three-dimensional one-layer geometrical ventricle with orthogonal fibers and with anatomically oriented fibers. PMID:18002551
Two-dimensional numerical modeling of the Rheasilvia impact formation
NASA Astrophysics Data System (ADS)
Ivanov, B. A.; Melosh, H. J.
2013-07-01
We numerically modeled the formation of Rheasilvia crater, an enormous impact basin centered on asteroid 4 Vesta's south pole. Using a trial and error method, our models were adjusted to produce the best possible fit to Rheasilvia's size and shape, as observed during the Vesta orbital stage of the Dawn mission. The final model yields estimates of the shock wave decay, escaped material volume, depth of excavation, and other relevant characteristics, to the extent allowed by the two-dimensional (axially symmetric) approximation of the Simplified Arbitrary Lagrangian Eulerian hydrocode. Our model results permit interpretation of the Dawn data on Vesta's shape, topographic crater profiles, and the origin of the Vestoid asteroid family as escaped ejecta from the Rheasilvia crater.
Toward a General Nonlinear Model of Reduced Scale UAVs
NASA Astrophysics Data System (ADS)
Chriette, A.; Cheviron, T.; Plestan, F.
2009-03-01
This paper proposes, through a survey of models of several UAV-Structures, a generic nonlinear model for reduced scale aerial robotic vehicles (6 DOF)*. Dynamics of an aircraft and some VTOL UAV (quadricopter, ducted fan and classical helicopter) are illustrated. This generic model focuses only on the key physical efforts acting on the dynamics in order to be sufficiently simple to design a controller. The Small Body Forces expression which can introduce a zero dynamics is then discussed.
Spatial modes in one-dimensional models for capillary jets
NASA Astrophysics Data System (ADS)
Guerrero, J.; González, H.; García, F. J.
2016-03-01
One-dimensional (1D) models are widely employed to simplify the analysis of axisymmetric capillary jets. These models postulate that, for slender deformations of the free surface, the radial profile of the axial velocity can be approximated as uniform (viscous slice, averaged, and Cosserat models) or parabolic (parabolic model). In classical works on spatial stability analysis with 1D models, considerable misinterpretation was generated about the modes yielded by each model. The already existing physical analysis of three-dimensional (3D) axisymmetric spatial modes enables us to relate these 1D spatial modes to the exact 3D counterparts. To do so, we address the surface stimulation problem, which can be treated as linear, by considering the effect of normal and tangential stresses to perturb the jet. A Green's function for a spatially local stimulation having a harmonic time dependence provides the general formalism to describe any time-periodic stimulation. The Green's function of this signaling problem is known to be a superposition of the spatial modes, but in fact these modes are of fundamental nature, i.e., not restricted to the surface stimulation problem. The smallness of the wave number associated with each mode is the criterion to validate or invalidate the 1D approaches. The proposed axial-velocity profiles (planar or parabolic) also have a remarkable influence on the outcomes of each 1D model. We also compare with the classical 3D results for (i) conditions for absolute instability, and (ii) the amplitude of the unstable mode resulting from both normal and tangential surface stress stimulation. Incidentally, as a previous task, we need to re-deduce 1D models in order to include eventual stresses of various possible origins (electrohydrodynamic, thermocapillary, etc.) applied on the free surface, which were not considered in the previous general formulations.
A Reduced-Order Model of Transport Phenomena for Power Plant Simulation
Paul Cizmas; Brian Richardson; Thomas Brenner; Raymond Fontenot
2009-09-30
A reduced-order model based on proper orthogonal decomposition (POD) has been developed to simulate transient two- and three-dimensional isothermal and non-isothermal flows in a fluidized bed. Reduced-order models of void fraction, gas and solids temperatures, granular energy, and z-direction gas and solids velocity have been added to the previous version of the code. These algorithms are presented and their implementation is discussed. Verification studies are presented for each algorithm. A number of methods to accelerate the computations performed by the reduced-order model are presented. The errors associated with each acceleration method are computed and discussed. Using a combination of acceleration methods, a two-dimensional isothermal simulation using the reduced-order model is shown to be 114 times faster than using the full-order model. In the pursue of achieving the objectives of the project and completing the tasks planned for this program, several unplanned and unforeseen results, methods and studies have been generated. These additional accomplishments are also presented and they include: (1) a study of the effect of snapshot sampling time on the computation of the POD basis functions, (2) an investigation of different strategies for generating the autocorrelation matrix used to find the POD basis functions, (3) the development and implementation of a bubble detection and tracking algorithm based on mathematical morphology, (4) a method for augmenting the proper orthogonal decomposition to better capture flows with discontinuities, such as bubbles, and (5) a mixed reduced-order/full-order model, called point-mode proper orthogonal decomposition, designed to avoid unphysical due to approximation errors. The limitations of the proper orthogonal decomposition method in simulating transient flows with moving discontinuities, such as bubbling flows, are discussed and several methods are proposed to adapt the method for future use.
Development of Unsteady Aerodynamic and Aeroelastic Reduced-Order Models Using the FUN3D Code
NASA Technical Reports Server (NTRS)
Silva, Walter A.; Vatsa, Veer N.; Biedron, Robert T.
2009-01-01
Recent significant improvements to the development of CFD-based unsteady aerodynamic reduced-order models (ROMs) are implemented into the FUN3D unstructured flow solver. These improvements include the simultaneous excitation of the structural modes of the CFD-based unsteady aerodynamic system via a single CFD solution, minimization of the error between the full CFD and the ROM unsteady aero- dynamic solution, and computation of a root locus plot of the aeroelastic ROM. Results are presented for a viscous version of the two-dimensional Benchmark Active Controls Technology (BACT) model and an inviscid version of the AGARD 445.6 aeroelastic wing using the FUN3D code.
Using Three-Dimensional Models to Teach Molecular Structures in High School Chemistry.
ERIC Educational Resources Information Center
Copolo, Cynthia F.; Hounshell, Paul B.
1995-01-01
Compares the effects of using two- and three-dimensional model representations of molecular structures on student learning of organic chemical structures. Reports that students using both three-dimensional computer models and ball-and-stick models scored higher on the three-dimensional retention test of isomeric identification but lower on a…
A comparison of two- and three-dimensional stochastic models of regional solute movement
Shapiro, A.M.; Cvetkovic, V.D.
1990-01-01
Recent models of solute movement in porous media that are based on a stochastic description of the porous medium properties have been dedicated primarily to a three-dimensional interpretation of solute movement. In many practical problems, however, it is more convenient and consistent with measuring techniques to consider flow and solute transport as an areal, two-dimensional phenomenon. The physics of solute movement, however, is dependent on the three-dimensional heterogeneity in the formation. A comparison of two- and three-dimensional stochastic interpretations of solute movement in a porous medium having a statistically isotropic hydraulic conductivity field is investigated. To provide an equitable comparison between the two- and three-dimensional analyses, the stochastic properties of the transmissivity are defined in terms of the stochastic properties of the hydraulic conductivity. The variance of the transmissivity is shown to be significantly reduced in comparison to that of the hydraulic conductivity, and the transmissivity is spatially correlated over larger distances. These factors influence the two-dimensional interpretations of solute movement by underestimating the longitudinal and transverse growth of the solute plume in comparison to its description as a three-dimensional phenomenon. Although this analysis is based on small perturbation approximations and the special case of a statistically isotropic hydraulic conductivity field, it casts doubt on the use of a stochastic interpretation of the transmissivity in describing regional scale movement. However, by assuming the transmissivity to be the vertical integration of the hydraulic conductivity field at a given position, the stochastic properties of the hydraulic conductivity can be estimated from the stochastic properties of the transmissivity and applied to obtain a more accurate interpretation of solute movement. ?? 1990 Kluwer Academic Publishers.
Greene, Samuel M; Shan, Xiao; Clary, David C
2015-12-17
Quantum mechanical methods for calculating rate constants are often intractable for reactions involving many atoms. Semiclassical transition state theory (SCTST) offers computational advantages over these methods but nonetheless scales exponentially with the number of degrees of freedom (DOFs) of the system. Here we present a method with more favorable scaling, reduced-dimensionality SCTST (RD SCTST), that treats only a subset of DOFs of the system explicitly. We apply it to three H abstraction and exchange reactions for which two-dimensional potential energy surfaces (PESs) have previously been constructed and evaluated using RD quantum scattering calculations. We differentiated these PESs to calculate harmonic frequencies and anharmonic constants, which were then used to calculate cumulative reaction probabilities and rate constants by RD SCTST. This method yielded rate constants in good agreement with quantum scattering results. Notably, it performed well for a heavy-light-heavy reaction, even though it does not explicitly account for corner-cutting effects. Recent extensions to SCTST that improve its treatment of deep tunneling were also evaluated within the reduced-dimensionality framework. The success of RD SCTST in this study suggests its potential applicability to larger systems. PMID:26090556
Digital Moon: A three-dimensional framework for lunar modeling
NASA Astrophysics Data System (ADS)
Paige, D. A.; Elphic, R. C.; Foote, E. J.; Meeker, S. R.; Siegler, M. A.; Vasavada, A. R.
2009-12-01
The Moon has a complex three-dimensional shape with significant large-scale and small-scale topographic relief. The Moon’s topography largely controls the distribution of incident solar radiation, as well as the scattered solar and infrared radiation fields. Topography also affects the Moon’s interaction with the space environment, its magnetic field, and the propagation of seismic waves. As more extensive and detailed lunar datasets become available, there is an increasing need to interpret and compare them with the results of physical models in a fully three-dimensional context. We have developed a three-dimensional framework for lunar modeling we call the Digital Moon. The goal of this work is to enable high fidelity physical modeling and visualization of the Moon in a parallel computing environment. The surface of the Moon is described by a continuous triangular mesh of arbitrary shape and spatial scale. For regions of limited geographic extent, it is convenient to employ meshes on a rectilinear grid. However for global-scale modeling, we employ a continuous geodesic gridding scheme (Teanby, 2008). Each element in the mesh surface is allowed to have a unique set of physical properties. Photon and particle interactions between mesh elements are modeled using efficient ray tracing algorithms. Heat, mass, photon and particle transfer within each mesh element are modeled in one dimension. Each compute node is assigned a portion of the mesh and collective interactions between elements are handled through network interfaces. We have used the model to calculate lunar surface and subsurface temperatures that can be compared directly with radiometric temperatures measured by the Diviner Lunar Radiometer Experiment on the Lunar Reconnaissance Orbiter. The model includes realistic surface photometric functions based on goniometric measurements of lunar soil samples (Foote and Paige, 2009), and one-dimensional thermal models based on lunar remote sensing and Apollo
NASA Astrophysics Data System (ADS)
Affour, Bachar; Nachtergaele, Philippe; Spirkovitch, Stevan; Ostergaard, Dale; Gyimesi, Miklos P.
2000-04-01
System designers need access to high-fidelity behavioral models in order to simulate system of MEMS, electronics and packaging. Therefore, the need exists to create behavioral models that provide accurate harmonic and time-domain solutions in a fast and efficient manner. In the MEMSCAP MEMS design suite, the EDD family of tools enables the generation of non-linear dynamic behavioral models from models with a hierarchically lower level of abstraction or measured data. In this paper, we report on a new module of EDD, the ANSYS ModelBuilder, which is embedded in the ANSYS Multi-physics tool set. The module reduces the dimensionality of FEM models built in ANSYS and writes them in popular modeling languages such as HDL-A, SPICE, VHDL-AMS and Verilog-A. We illustrate the capabilities of our new tool by utilizing it to develop two system level examples and compare the results to the full 3D descriptions.
Projecting low-dimensional chaos from spatiotemporal dynamics in a model for plastic instability
NASA Astrophysics Data System (ADS)
Sarmah, Ritupan; Ananthakrishna, G.
2012-11-01
We investigate the possibility of projecting low-dimensional chaos from spatiotemporal dynamics of a model for a kind of plastic instability observed under constant strain rate deformation conditions. We first discuss the relationship between the spatiotemporal patterns of the model reflected in the nature of dislocation bands and the nature of stress serrations. We show that at low applied strain rates, there is a one-to-one correspondence with the randomly nucleated isolated bursts of mobile dislocation density and the stress drops. We then show that the model equations are spatiotemporally chaotic by demonstrating the number of positive Lyapunov exponents and Lyapunov dimension scale with the system size at low and high strain rates. Using a modified algorithm for calculating correlation dimension density, we show that the stress-strain signals at low applied strain rates corresponding to spatially uncorrelated dislocation bands exhibit features of low-dimensional chaos. This is made quantitative by demonstrating that the model equations can be approximately reduced to space-independent model equations for the average dislocation densities, which is known to be low-dimensionally chaotic. However, the scaling regime for the correlation dimension shrinks with increasing applied strain rate due to increasing propensity for propagation of the dislocation bands.
Projecting low-dimensional chaos from spatiotemporal dynamics in a model for plastic instability.
Sarmah, Ritupan; Ananthakrishna, G
2012-11-01
We investigate the possibility of projecting low-dimensional chaos from spatiotemporal dynamics of a model for a kind of plastic instability observed under constant strain rate deformation conditions. We first discuss the relationship between the spatiotemporal patterns of the model reflected in the nature of dislocation bands and the nature of stress serrations. We show that at low applied strain rates, there is a one-to-one correspondence with the randomly nucleated isolated bursts of mobile dislocation density and the stress drops. We then show that the model equations are spatiotemporally chaotic by demonstrating the number of positive Lyapunov exponents and Lyapunov dimension scale with the system size at low and high strain rates. Using a modified algorithm for calculating correlation dimension density, we show that the stress-strain signals at low applied strain rates corresponding to spatially uncorrelated dislocation bands exhibit features of low-dimensional chaos. This is made quantitative by demonstrating that the model equations can be approximately reduced to space-independent model equations for the average dislocation densities, which is known to be low-dimensionally chaotic. However, the scaling regime for the correlation dimension shrinks with increasing applied strain rate due to increasing propensity for propagation of the dislocation bands. PMID:23214858
Reduced-order-model based feedback control of the Modified Hasegawa-Wakatani equations
NASA Astrophysics Data System (ADS)
Goumiri, Imene; Rowley, Clarence; Ma, Zhanhua; Gates, David; Parker, Jeffrey; Krommes, John
2012-10-01
In this study, we demonstrate the development of model-based feedback control for stabilization of an unstable equilibrium obtained in the Modified Hasegawa-Wakatani (MHW) equations, a classic model in plasma turbulence. First, a balanced truncation is applied; a model reduction technique that has been proved successful in flow control design problems, to obtain a low dimensional model of the linearized MHW equation. A model-based feedback controller is then designed for the reduced order model using linear quadratic regulators (LQR) then a linear quadratic gaussian (LQG) control. The controllers are then applied on the original linearized and nonlinear MHW equations to stabilize the equilibrium and suppress the transition to drift-wave induced turbulences.
Use of a clay modeling task to reduce chocolate craving.
Andrade, Jackie; Pears, Sally; May, Jon; Kavanagh, David J
2012-06-01
Elaborated Intrusion theory (EI theory; Kavanagh, Andrade, & May, 2005) posits two main cognitive components in craving: associative processes that lead to intrusive thoughts about the craved substance or activity, and elaborative processes supporting mental imagery of the substance or activity. We used a novel visuospatial task to test the hypothesis that visual imagery plays a key role in craving. Experiment 1 showed that spending 10 min constructing shapes from modeling clay (plasticine) reduced participants' craving for chocolate compared with spending 10 min 'letting your mind wander'. Increasing the load on verbal working memory using a mental arithmetic task (counting backwards by threes) did not reduce craving further. Experiment 2 compared effects on craving of a simpler verbal task (counting by ones) and clay modeling. Clay modeling reduced overall craving strength and strength of craving imagery, and reduced the frequency of thoughts about chocolate. The results are consistent with EI theory, showing that craving is reduced by loading the visuospatial sketchpad of working memory but not by loading the phonological loop. Clay modeling might be a useful self-help tool to help manage craving for chocolate, snacks and other foods. PMID:22369958
Clark, Neil R.; Szymkiewicz, Maciej; Wang, Zichen; Monteiro, Caroline D.; Jones, Matthew R.; Ma’ayan, Avi
2016-01-01
Gene set analysis of differential expression, which identifies collectively differentially expressed gene sets, has become an important tool for biology. The power of this approach lies in its reduction of the dimensionality of the statistical problem and its incorporation of biological interpretation by construction. Many approaches to gene set analysis have been proposed, but benchmarking their performance in the setting of real biological data is difficult due to the lack of a gold standard. In a previously published work we proposed a geometrical approach to differential expression which performed highly in benchmarking tests and compared well to the most popular methods of differential gene expression. As reported, this approach has a natural extension to gene set analysis which we call Principal Angle Enrichment Analysis (PAEA). PAEA employs dimensionality reduction and a multivariate approach for gene set enrichment analysis. However, the performance of this method has not been assessed nor its implementation as a web-based tool. Here we describe new benchmarking protocols for gene set analysis methods and find that PAEA performs highly. The PAEA method is implemented as a user-friendly web-based tool, which contains 70 gene set libraries and is freely available to the community. PMID:26848405
Infinite dimensional variational inequalities and dynamic network disequilibrium modeling
Friesz, T.; Bernstein, D.
1994-12-31
In this paper we explain the importance of modeling disequilibrium flow patterns occurring on networks, with special emphasis on automobile networks and the role of information technology. We show how elementary notions of disequilibrium, whether abstract, physical or economic in nature, give rise to an adjustment process expressible as a dynamical system. We comment that when such a system is autonomous its steady states can be given the traditional finite dimensional variational inequality/fixed point representations common to static network equilibria. Beyond this, and unique to our work, we show that if the disequilibrium dynamical system is nonautonomous it may tend toward moving or dynamic (instead of static) network equilibria expressible as infinite dimensional variational inequalities. Using concepts of fast and slow dynamic systems, we show how day-to-day and within-day aspects of automobile travel decision making can be combined to yield a nonautonomous dynamical system with the mathematical properties reviewed previously. We introduce axioms for a proper predictive model of urban network flows which integrates both day-to-day and within-day considerations and postulate one such model for further study.
Modeling of Unsteady Three-dimensional Flows in Multistage Machines
NASA Technical Reports Server (NTRS)
Hall, Kenneth C.; Pratt, Edmund T., Jr.; Kurkov, Anatole (Technical Monitor)
2003-01-01
Despite many years of development, the accurate and reliable prediction of unsteady aerodynamic forces acting on turbomachinery blades remains less than satisfactory, especially when viewed next to the great success investigators have had in predicting steady flows. Hall and Silkowski (1997) have proposed that one of the main reasons for the discrepancy between theory and experiment and/or industrial experience is that many of the current unsteady aerodynamic theories model a single blade row in an infinitely long duct, ignoring potentially important multistage effects. However, unsteady flows are made up of acoustic, vortical, and entropic waves. These waves provide a mechanism for the rotors and stators of multistage machines to communicate with one another. In other words, wave behavior makes unsteady flows fundamentally a multistage (and three-dimensional) phenomenon. In this research program, we have has as goals (1) the development of computationally efficient computer models of the unsteady aerodynamic response of blade rows embedded in a multistage machine (these models will ultimately be capable of analyzing three-dimensional viscous transonic flows), and (2) the use of these computer codes to study a number of important multistage phenomena.
Two-dimensional modeling of magnetically imploded liners
Atchison, W.L.; Bowers, R.L.; Brownell, J.H.; Lee, H.
1996-11-01
Magnetically imploded massive cylindrical liner drivers have been studied in two-dimensions for low, intermediate and high energy pulsed power systems. The simulations have been carried out using a resistive Eulerian magnetohydrodynamics computational model which includes material strength, and models the interactions between the imploding liner and the electrode walls. The computations simulate the generation of perturbations and their subsequent growth during the implosion. At low energies a solid liner remains in the plastic regime, reaching an inner cylindrical target with velocities of a few mm per {mu}s. At higher energies (where one-dimensional models predict implosion velocities of order 1 cm/{mu}s or more) resistive heating of the liner results in melting, and the effects of magnetically driven instabilities become important. We discuss the two-dimensional issues which arise in these systems. These include: the onset of perturbations associated with the motion of the liner along the electrodes; the growth of instabilities in liquid layers; and the suppression of instability growth during the implosion by maintaining a solid inner layer. Studies have been made of liners designed for the Pegasus capacitor bank facility (currents in the 5 - 12 MA regime), and for the Procyon high explosive system (currents in the 20 MA regime). This work focus on the design and performance of the first Pegasus composite megabar liner experiment.
Modeling direct interband tunneling. II. Lower-dimensional structures
Pan, Andrew; Chui, Chi On
2014-08-07
We investigate the applicability of the two-band Hamiltonian and the widely used Kane analytical formula to interband tunneling along unconfined directions in nanostructures. Through comparisons with k·p and tight-binding calculations and quantum transport simulations, we find that the primary correction is the change in effective band gap. For both constant fields and realistic tunnel field-effect transistors, dimensionally consistent band gap scaling of the Kane formula allows analytical and numerical device simulations to approximate non-equilibrium Green's function current characteristics without arbitrary fitting. This allows efficient first-order calibration of semiclassical models for interband tunneling in nanodevices.
Superconductivity in the two-dimensional generalized Hubbard model
NASA Astrophysics Data System (ADS)
Lima, L. S.
2016-08-01
We have used the Green's functions method at finite temperature and the Kubo's formalism, to calculate the electron conductivity σ(ω) in the generalized two-dimensional Hubbard model. We have obtained a behavior superconductor for the system to T > T0. The AC conductivity falls to zero in ω =ω0 , where ω0 depends on Δ, which is the gap of the system. The behavior gotten is according of with the behavior of the superconductors of high Tc where there is a changes abruptly from a Mott's insulator state to superconductor.
Two-dimensional magnetohydrodynamic turbulence - Cylindrical, non-dissipative model
NASA Technical Reports Server (NTRS)
Montgomery, D.; Vahala, G.
1979-01-01
Incompressible magnetohydrodynamic turbulence is treated in the presence of cylindrical boundaries which are perfectly conducting and rigidly smooth. The model treated is non-dissipative and two-dimensional, the variation of all quantities in the axial direction being ignored. Equilibrium Gibbs ensemble predictions are explored assuming the constraint of constant axial current (appropriate to tokamak operation). No small-amplitude approximations are made. The expectation value of the turbulent kinetic energy is found to approach zero for the state of maximum mean-square vector potential to energy ratio. These are the only states for which large velocity fluctuations are not expected.
Moduli inflation in five-dimensional supergravity models
Abe, Hiroyuki; Otsuka, Hajime E-mail: hajime.13.gologo@akane.waseda.jp
2014-11-01
We propose a simple but effective mechanism to realize an inflationary early universe consistent with the observed WMAP, Planck and/or BICEP2 data, which would be incorporated in various supersymmetric models of elementary particles constructed in the (effective) five-dimensional spacetime. In our scenario, the inflaton field is identified with one of the moduli appearing when the fifth direction is compactified, and a successful cosmological inflation without the so-called η problem can be achieved by a very simple moduli stabilization potential. We also discuss the related particle cosmology during and (just) after the inflation, such as the (no) cosmological moduli problem.
Features of electroweak symmetry breaking in five dimensional SUSY models
NASA Astrophysics Data System (ADS)
Lalak, Zygmunt; Lewicki, Marek; McGarrie, Moritz; Olszewski, Pawel
2015-11-01
We explore the phenomenological predictions of a supersymmetric standard model, with a large extra dimension and unifying gauge couplings. The modified five dimensional renormalisation group equations make it possible to obtain light, maximally mixed stops, with a low scale of supersymmetry breaking and a low unification scale. This allows the fine-tuning to be lowered right down to the barrier coming directly from experimental lower limits on the stop masses. We also show that modifying the SUSY breaking pattern to obtain lighter stops at the high scale does not result in fine-tuning relaxation, and only RGE effects turn out to be effective in generating a lower fine-tuning.
Finite volume model for two-dimensional shallow environmental flow
Simoes, F.J.M.
2011-01-01
This paper presents the development of a two-dimensional, depth integrated, unsteady, free-surface model based on the shallow water equations. The development was motivated by the desire of balancing computational efficiency and accuracy by selective and conjunctive use of different numerical techniques. The base framework of the discrete model uses Godunov methods on unstructured triangular grids, but the solution technique emphasizes the use of a high-resolution Riemann solver where needed, switching to a simpler and computationally more efficient upwind finite volume technique in the smooth regions of the flow. Explicit time marching is accomplished with strong stability preserving Runge-Kutta methods, with additional acceleration techniques for steady-state computations. A simplified mass-preserving algorithm is used to deal with wet/dry fronts. Application of the model is made to several benchmark cases that show the interplay of the diverse solution techniques.
Users manual for a one-dimensional Lagrangian transport model
Schoellhamer, D.H.; Jobson, H.E.
1986-01-01
A Users Manual for the Lagrangian Transport Model (LTM) is presented. The LTM uses Lagrangian calculations that are based on a reference frame moving with the river flow. The Lagrangian reference frame eliminates the need to numerically solve the convective term of the convection-diffusion equation and provides significant numerical advantages over the more commonly used Eulerian reference frame. When properly applied, the LTM can simulate riverine transport and decay processes within the accuracy required by most water quality studies. The LTM is applicable to steady or unsteady one-dimensional unidirectional flows in fixed channels with tributary and lateral inflows. Application of the LTM is relatively simple and optional capabilities improve the model 's convenience. Appendices give file formats and three example LTM applications that include the incorporation of the QUAL II water quality model 's reaction kinetics into the LTM. (Author 's abstract)
Three-dimensional modelling of film flows over spinning disks
NASA Astrophysics Data System (ADS)
Zhao, Kun; Wray, Alex; Yang, Junfeng; Matar, Omar
2014-11-01
Film flows over spinning disks are of central importance to a wide array of industrial processes, such as the augmentation of heat and mass transfer in chemical reactors, or power production in metallurgy. As a result they have been extensively investigated experimentally. Theoretically they constitute an interesting problem due to the interplay of inertial, capillary, centrifugal and Coriolis forces. However, modelling efforts have typically been restricted to the consideration of the one-dimensional axisymmetric situation. We extend the existing models to incorporate azimuthal variations. The resultant system is solved via the use of an operator-splitting method. In addition, we have performed Direct Numerical Simulations of the system. We compare the low order model, the direct simulations and the results of experiments, to reveal a wide variety of different flow regimes in accordance with existing literature. EPSRC Programme Grant, MEMPHIS, EP/K0039761/1.
Modeling for Process Control: High-Dimensional Systems
Lev S. Tsimring
2008-09-15
Most of other technologically important systems (among them, powders and other granular systems) are intrinsically nonlinear. This project is focused on building the dynamical models for granular systems as a prototype for nonlinear high-dimensional systems exhibiting complex non-equilibrium phenomena. Granular materials present a unique opportunity to study these issues in a technologically important and yet fundamentally interesting setting. Granular systems exhibit a rich variety of regimes from gas-like to solid-like depending on the external excitation. Based the combination of the rigorous asymptotic analysis, available experimental data and nonlinear signal processing tools, we developed a multi-scale approach to the modeling of granular systems from detailed description of grain-grain interaction on a micro-scale to continuous modeling of large-scale granular flows with important geophysical applications.
Three-dimensional cardiac computational modelling: methods, features and applications.
Lopez-Perez, Alejandro; Sebastian, Rafael; Ferrero, Jose M
2015-01-01
The combination of computational models and biophysical simulations can help to interpret an array of experimental data and contribute to the understanding, diagnosis and treatment of complex diseases such as cardiac arrhythmias. For this reason, three-dimensional (3D) cardiac computational modelling is currently a rising field of research. The advance of medical imaging technology over the last decades has allowed the evolution from generic to patient-specific 3D cardiac models that faithfully represent the anatomy and different cardiac features of a given alive subject. Here we analyse sixty representative 3D cardiac computational models developed and published during the last fifty years, describing their information sources, features, development methods and online availability. This paper also reviews the necessary components to build a 3D computational model of the heart aimed at biophysical simulation, paying especial attention to cardiac electrophysiology (EP), and the existing approaches to incorporate those components. We assess the challenges associated to the different steps of the building process, from the processing of raw clinical or biological data to the final application, including image segmentation, inclusion of substructures and meshing among others. We briefly outline the personalisation approaches that are currently available in 3D cardiac computational modelling. Finally, we present examples of several specific applications, mainly related to cardiac EP simulation and model-based image analysis, showing the potential usefulness of 3D cardiac computational modelling into clinical environments as a tool to aid in the prevention, diagnosis and treatment of cardiac diseases. PMID:25928297
Modified two-dimensional computational model for electrostrictive graft elastomer
NASA Astrophysics Data System (ADS)
Sun, Changjie; Wang, Youqi; Su, Ji
2004-07-01
A modified two-dimensional computational model is developed to calculate the electromechanical properties of the electrostrictive graft elastomer. The electrostrictive graft elastomer, recently developed by NASA, is a type of electro-active polymer. In a previous paper, the authors calculated electrostrictive graft elastomer electromechanical properties using a 2-D atomic force field. For this 2-D polymer structure, a much higher electric field was required to produce strain compared with that required in experiments. Two reasons could explain the higher electric field strength: (1) Polymer chain movement is restricted to a 2-D plane rather than to a 3-D plane. Out-plane dihedral torsional angle change would thus not be modeled. For this reason, 2-D polymer chains are less flexible than actual 3-D polymer chains. (2) Boundary effect of the computational model. In the original model, a unit cell consisting of a single graft unit was developed to simulate the deformation of the electrostrictive graft elastomer. The boundary of the unit cell would restrict the rotation of the graft unit. In this paper, a modified 2-D computational model is established to overcome the above problems. Firstly, three-dimensional deformations, induced by both bending angle and dihedral torsional angle changes, are projected onto a two-dimensional plane. Using both theoretical and numerical analyses, the projected 2-D equilibrium bending angle is shown to have the same value as the 3-D equilibrium bending angle. The 2-D equivalent bending stiffness is derived using a series model based upon the fact that both bending and dihedral torsion produce configuration change. The equivalent stiffness is justified by the characteristics of the polymer chain and end-to-end distance. Secondly, a self-consistent scheme is developed to eliminate the boundary effect. Eight images of the unit cell are created peripherally, with the original unit cell in the center. Thus the boundary can only affect the
Reduced complexity structural modeling for automated airframe synthesis
NASA Technical Reports Server (NTRS)
Hajela, Prabhat
1987-01-01
A procedure is developed for the optimum sizing of wing structures based on representing the built-up finite element assembly of the structure by equivalent beam models. The reduced-order beam models are computationally less demanding in an optimum design environment which dictates repetitive analysis of several trial designs. The design procedure is implemented in a computer program requiring geometry and loading information to create the wing finite element model and its equivalent beam model, and providing a rapid estimate of the optimum weight obtained from a fully stressed design approach applied to the beam. The synthesis procedure is demonstrated for representative conventional-cantilever and joined wing configurations.
Parameterized reduced-order models using hyper-dual numbers.
Fike, Jeffrey A.; Brake, Matthew Robert
2013-10-01
The goal of most computational simulations is to accurately predict the behavior of a real, physical system. Accurate predictions often require very computationally expensive analyses and so reduced order models (ROMs) are commonly used. ROMs aim to reduce the computational cost of the simulations while still providing accurate results by including all of the salient physics of the real system in the ROM. However, real, physical systems often deviate from the idealized models used in simulations due to variations in manufacturing or other factors. One approach to this issue is to create a parameterized model in order to characterize the effect of perturbations from the nominal model on the behavior of the system. This report presents a methodology for developing parameterized ROMs, which is based on Craig-Bampton component mode synthesis and the use of hyper-dual numbers to calculate the derivatives necessary for the parameterization.
Multi-Dimensional Calibration of Impact Dynamic Models
NASA Technical Reports Server (NTRS)
Horta, Lucas G.; Reaves, Mercedes C.; Annett, Martin S.; Jackson, Karen E.
2011-01-01
NASA Langley, under the Subsonic Rotary Wing Program, recently completed two helicopter tests in support of an in-house effort to study crashworthiness. As part of this effort, work is on-going to investigate model calibration approaches and calibration metrics for impact dynamics models. Model calibration of impact dynamics problems has traditionally assessed model adequacy by comparing time histories from analytical predictions to test at only a few critical locations. Although this approach provides for a direct measure of the model predictive capability, overall system behavior is only qualitatively assessed using full vehicle animations. In order to understand the spatial and temporal relationships of impact loads as they migrate throughout the structure, a more quantitative approach is needed. In this work impact shapes derived from simulated time history data are used to recommend sensor placement and to assess model adequacy using time based metrics and orthogonality multi-dimensional metrics. An approach for model calibration is presented that includes metric definitions, uncertainty bounds, parameter sensitivity, and numerical optimization to estimate parameters to reconcile test with analysis. The process is illustrated using simulated experiment data.
Interactive Exploration of Microarray Gene Expression Patterns in a Reduced Dimensional Space
Misra, Jatin; Schmitt, William; Hwang, Daehee; Hsiao, Li-Li; Gullans, Steve; Stephanopoulos, George; Stephanopoulos, Gregory
2002-01-01
The very high dimensional space of gene expression measurements obtained by DNA microarrays impedes the detection of underlying patterns in gene expression data and the identification of discriminatory genes. In this paper we show the use of projection methods such as principal components analysis (PCA) to obtain a direct link between patterns in the genes and patterns in samples. This feature is useful in the initial interactive pattern exploration of gene expression data and data-driven learning of the nature and types of samples. Using oligonucleotide microarray measurements of 40 samples from different normal human tissues, we show that distinct patterns are obtained when the genes are projected on a two-dimensional plane spanned by the loadings of the two major principal components. These patterns define the particular genes associated with a sample class (i.e., tissue). When used separately from the other genes, these class-specific (i.e., tissue-specific) genes in turn define distinct tissue patterns in the projection space spanned by the scores of the two major principal components. In this study, PCA projection facilitated discriminatory gene selection for different tissues and identified tissue-specific gene expression signatures for liver, skeletal muscle, and brain samples. Furthermore, it allowed the classification of nine new samples belonging to these three types using the linear combination of the expression levels of the tissue-specific genes determined from the first set of samples. The application of the technique to other published data sets is also discussed. [Online supplementary material available at www.genome.org.] PMID:12097349
Dimensional models of personality: the five-factor model and the DSM-5
Trull, Timothy J.; Widiger, Thomas A.
2013-01-01
It is evident that the classification of personality disorder is shifting toward a dimensional trait model and, more specifically, the five-factor model (FFM). The purpose of this paper is to provide an overview of the FFM of personality disorder. It will begin with a description of this dimensional model of normal and abnormal personality functioning, followed by a comparison with a proposal for future revisions to DSM-5 and a discussion of its potential advantages as an integrative hierarchical model of normal and abnormal personality structure. PMID:24174888
Two-Dimensional Numerical Modeling of Anthropogenic Beach Berm Erosion
NASA Astrophysics Data System (ADS)
Shakeri Majd, M.; Schubert, J.; Gallien, T.; Sanders, B. F.
2014-12-01
Anthropogenic beach berms (sometimes called artificial berms or artificial dunes) temporarily enhance the ability of beaches to withstand overtopping and thus guard against coastal flooding. However, the combination of a rising tide, storm surge, and/or waves may erode anthropogenic berms in a matter of hours or less and cause flooding [1]. Accurate forecasts of coastal flooding therefore demand the ability to predict where and when berms fail and the volume of water that overtops into defended coastal lowlands. Here, a two-dimensional numerical model of swash zone waves and erosion is examined as a tool for predicting the erosion of anthropogenic beach berms. The 2D model is known as a Debris Flow Model (DFM) because it tightly couples flow and sediment transport within an approximate Riemann solver and is able to resolve shocks in fluid/sediment interface [2]. The DFM also includes a two dimensional avalanching scheme to account for gravity-driven slumping of steep slopes. The performance of the DFM is examined with field-scale anthropogenic berm erosion data collected at Newport Beach, California. Results show that the DFM can be applied in the swash zone to resolve wave-by-wave flow and sediment transport. Results also show that it is possible to calibrate the model for a particular event, and then predict erosion for another event, but predictions are sensitive to model parameters, such as erosion and avalanching. References: [1] Jochen E. Schubert, Timu W. Gallien, Morteza Shakeri Majd, and Brett F. Sanders. Terrestrial laser scanning of anthropogenic beach berm erosion and overtopping. Journal of Coastal Research In-Press, 2014. [2] Morteza Shakeri Majd and Brett F. Sanders. The LHLLC scheme for Two-Layer and Two-Phase transcritical flows over a mobile bed with avalanching, wetting and drying. Advances in Water Resources, 64, 16-31, 2014.
Novel three-dimensional in vitro models of ovarian endometriosis
2014-01-01
Background Endometriosis is characterized by the presence of functional endometrial tissue outside of the uterine cavity. It affects 1 in 10 women of reproductive age. This chronic condition commonly leads to consequences such as pelvic pain, dysmenorrhea, infertility and an elevated risk of epithelial ovarian cancer. Despite the prevalence of endometriosis and its impact on women’s lives, there are relatively few in vitro and in vivo models available for studying the complex disease biology, pathophysiology, and for use in the preclinical development of novel therapies. The goal of this study was to develop a novel three-dimensional (3D) cell culture model of ovarian endometriosis and to test whether it is more reflective of endometriosis biology than traditional two dimensional (2D) monolayer cultures. Methods A novel ovarian endometriosis epithelial cell line (EEC16) was isolated from a 34-year old female with severe endometriosis. After characterization of cells using in vitro assays, western blotting and RNA-sequencing, this cell line and a second, already well characterized endometriosis cell line, EEC12Z, were established as in vitro 3D spheroid models. We compared biological features of 3D spheroids to 2D cultures and human endometriosis lesions using immunohistochemistry and real-time semi-quantitative PCR. Results In comparison to normal ovarian epithelial cells, EEC16 displayed features of neoplastic transformation in in vitro assays. When cultured in 3D, EEC16 and EEC12Z showed differential expression of endometriosis-associated genes compared to 2D monolayer cultures, and more closely mimicked the molecular and histological features of human endometriosis lesions. Conclusions To our knowledge, this represents the first report of an in vitro spheroid model of endometriosis. 3D endometriosis models represent valuable experimental tools for studying EEC biology and the development of novel therapeutic approaches. PMID:24502583
A three-dimensional ring current decay model
NASA Technical Reports Server (NTRS)
Fok, Mei-Ching; Moore, Thomas E.; Kozyra, Janet U.; Ho, George C.; Hamilton, Douglas C.
1994-01-01
This work is an extension of a previous ring current decay model. In the previous work, a two-dimensional kinetic model was constructed to study the temporal variations of the equatorially mirroring ring current ions, considering charge exchange and Coulomb drag losses along drift paths in a magnetic dipole field. In this work, particles with arbitrary pitch angle are considered. By bounce averaging the kinetic equation of the phase space density, information along magnetic field lines can be inferred from the equator. The three-dimensional model is used to simulate the recovery phase of a model great magnetic storm, similar to that which occurred in early February 1986. The initial distribution of ring current ions (at the minimum Dst) is extrapolated to all local times from AMPTE/CCE spacecraft observations on the dawn and dusk sides of the inner magnetosphere spanning the L value range L = 2.25 to 6.75. Observations by AMPTE/CCE of ring current distributions over subsequent orbits during the storm recovery phase are compared to model outputs. In general, the calculated ion fluxes are consistent with observations, except for H+ fluxes at tens of keV, which are always over-estimated. A newly-invented visualization idea, designated as a chromogram, is used to display the spatial and energy dependence of the ring current ion differential flux. Important features of storm-time ring current, such as day-night asymmetry during injection and drift hole on the dayside at low energies (less than 10 keV), are manifested in the chromogram representation. The pitch angle distribution is well fit by the function, j(sub o)(1+Ay(exp n)), where y is sine of the equatorial pitch angle. The evolution of the index n is a combined effect of charge exchange loss and particle drift. At low energies (less than 30 keV), both drift dispersion and charge exchange are important in determining n.
One-dimensional cloud fluid model for propagating star formation
NASA Technical Reports Server (NTRS)
Titus, Timothy N.; Struck-Marcell, Curtis
1990-01-01
The aim of this project was to study the propagation of star formation (SF) with a self-consistent deterministic model for the interstellar gas. The questions of under what conditions does star formation propagate in this model and what are the mechanisms of the propagation are explored. Here, researchers used the deterministic Oort-type cloud fluid model of Scalo and Struck-Marcell (1984, also see the review of Struck-Marcell, Scalo and Appleton 1987). This cloud fluid approach includes simple models for the effects of cloud collisional coalescence or disruption, collisional energy dissipation, and cloud disruption and acceleration as the result of young star winds, HII regions and supernovae. An extensive one-zone parameter study is presented in Struck-Marcell and Scalo (1987). To answer the questions above, researchers carried out one-dimensional calculations for an annulus within a galactic disk, like the so-called solar neighborhood of the galactic chemical evolution. In the calculations the left-hand boundary is set equal to the right hand boundary. The calculation is obviously idealized; however, it is computationally convenient to study the first order effects of propagating star formation. The annulus was treated as if it were at rest, i.e., in the local rotating frame. This assumption may remove some interesting effects of a supersonic gas flow, but was necessary to maintain a numerical stability in the annulus. The results on the one-dimensional propagation of SF in the Oort cloud fluid model follow: (1) SF is propagated by means of hydrodynamic waves, which can be generated by external forces or by the pressure generated by local bursts. SF is not effectively propagated via diffusion or variation in cloud interaction rates without corresponding density and velocity changes. (2) The propagation and long-range effects of SF depend on how close the gas density is to the critical threshold value, i.e., on the susceptibility of the medium.
Reduced-order models of the coagulation cascade
NASA Astrophysics Data System (ADS)
Hansen, Kirk B.; Shadden, Shawn C.
2015-11-01
Previous models of flow-mediated thrombogenesis have generally included the transport and reaction of dozens of biochemical species involved in the coagulation cascade. Researchers have shown, however, that thrombin generation curves can be accurately reproduced by a significantly smaller system of reactions. These reduced-order models are based on the system of ordinary differential equations representative of a well-mixed system, however, not the system of advection-diffusion-reaction equations required to model the flow-mediated case. Additionally, they focus solely on reproducing the thrombin generation curve, although accurate representation of certain intermediate species may be required to model additional aspects of clot formation, e.g. interactions with activated and non-activated platelets. In this work, we develop a method to reduce the order of a coagulation model through optimization techniques. The results of this reduced-order model are then compared to those of the full system in several representative cardiovascular flows. This work was supported by NSF grant 1354541, the NSF GRFP, and NIH grant HL108272.
ODTLES : a model for 3D turbulent flow based on one-dimensional turbulence modeling concepts.
McDermott, Randy; Kerstein, Alan R.; Schmidt, Rodney Cannon
2005-01-01
This report describes an approach for extending the one-dimensional turbulence (ODT) model of Kerstein [6] to treat turbulent flow in three-dimensional (3D) domains. This model, here called ODTLES, can also be viewed as a new LES model. In ODTLES, 3D aspects of the flow are captured by embedding three, mutually orthogonal, one-dimensional ODT domain arrays within a coarser 3D mesh. The ODTLES model is obtained by developing a consistent approach for dynamically coupling the different ODT line sets to each other and to the large scale processes that are resolved on the 3D mesh. The model is implemented computationally and its performance is tested and evaluated by performing simulations of decaying isotropic turbulence, a standard turbulent flow benchmarking problem.
Controller design via structural reduced modeling by FETM
NASA Technical Reports Server (NTRS)
Yousuff, A.
1986-01-01
The Finite Element - Transfer Matrix (FETM) method has been developed to reduce the computations involved in analysis of structures. This widely accepted method, however, has certain limitations, and does not directly produce reduced models for control design. To overcome these shortcomings, a modification of FETM method has been developed. The modified FETM method easily produces reduced models that are tailored toward subsequent control design. Other features of this method are its ability to: (1) extract open loop frequencies and mode shapes with less computations, (2) overcome limitations of the original FETM method, and (3) simplify the procedures for output feedback, constrained compensation, and decentralized control. This semi annual report presents the development of the modified FETM, and through an example, illustrates its applicability to an output feedback and a decentralized control design.
Mobile phone model with metamaterials to reduce the exposure
NASA Astrophysics Data System (ADS)
Pinto, Yenny; Begaud, Xavier
2016-04-01
This work presents a terminal mobile model where an Inverted-F Antenna (IFA) is associated with three different kinds of metamaterials: artificial magnetic conductor (AMC), electromagnetic band gap (EBG) and resistive high-impedance surface (RHIS). The objective was to evaluate whether some metamaterials may be used to reduce exposure while preserving the antenna performances. The exposure has been evaluated using a simplified phantom model. Two configurations, antenna in front of the phantom and antenna hidden by the ground plane, have been evaluated. Results show that using an optimized RHIS, the SAR 10 g is reduced and the antenna performances are preserved. With RHIS solution, the SAR 10 g peak is reduced by 8 % when the antenna is located in front of the phantom and by 6 % when the antenna is hidden by ground plane.
Ferromagnetism in the two-dimensional periodic Anderson model
Batista, C. D.; Bonca, J.; Gubernatis, J. E.
2001-05-01
Using the constrained-path Monte Carlo method, we studied the magnetic properties of the two-dimensional periodic Anderson model for electron fillings between 1/4 and 1/2. We also derived two effective low-energy theories to assist in interpreting the numerical results. For 1/4 filling, we found that the system can be a Mott or a charge-transfer insulator, depending on the relative values of the Coulomb interaction and the charge-transfer gap between the two noninteracting bands. The insulator may be a paramagnet or antiferromagnet. We concentrated on the effect of electron doping on these insulating phases. Upon doping we obtained a partially saturated ferromagnetic phase for low concentrations of conduction electrons. If the system were a charge-transfer insulator, we would find that the ferromagnetism is induced by the well-known Ruderman-Kittel-Kasuya-Yosida interaction. However, we found a novel correlated hopping mechanism inducing the ferromagnetism in the region where the nondoped system is a Mott insulator. Our regions of ferromagnetism spanned a much smaller doping range than suggested by recent slave boson and dynamical mean-field theory calculations, but they were consistent with that obtained by density-matrix renormalization group calculations of the one-dimensional periodic Anderson model.
Intraspecific differences in bacterial responses to modelled reduced gravity
NASA Technical Reports Server (NTRS)
Baker, P. W.; Leff, L. G.
2005-01-01
AIMS: Bacteria are important residents of water systems, including those of space stations which feature specific environmental conditions, such as lowered effects of gravity. The purpose of this study was to compare responses with modelled reduced gravity of space station, water system bacterial isolates with other isolates of the same species. METHODS AND RESULTS: Bacterial isolates, Stenotrophomonas paucimobilis and Acinetobacter radioresistens, originally recovered from the water supply aboard the International Space Station (ISS) were grown in nutrient broth under modelled reduced gravity. Their growth was compared with type strains S. paucimobilis ATCC 10829 and A. radioresistens ATCC 49000. Acinetobacter radioresistens ATCC 49000 and the two ISS isolates showed similar growth profiles under modelled reduced gravity compared with normal gravity, whereas S. paucimobilis ATCC 10829 was negatively affected by modelled reduced gravity. CONCLUSIONS: These results suggest that microgravity might have selected for bacteria that were able to thrive under this unusual condition. These responses, coupled with impacts of other features (such as radiation resistance and ability to persist under very oligotrophic conditions), may contribute to the success of these water system bacteria. SIGNIFICANCE AND IMPACT OF THE STUDY: Water quality is a significant factor in many environments including the ISS. Efforts to remove microbial contaminants are likely to be complicated by the features of these bacteria which allow them to persist under the extreme conditions of the systems.
NASA Technical Reports Server (NTRS)
Turco, R. P.; Whitten, R. C.
1977-01-01
A one-dimensional model of stratospheric trace constituents is described in detail. Specifically, the numerical solution of the species continuity equations, including a technique for treating the stiff differential equations representing the chemical kinetic terms, and an appropriate method for simulating the diurnal variations of the species concentrations, are discussed. A specialized treatment of atmospheric photodissociation rates is outlined in the text. The choice of a vertical eddy diffusivity profile and its success in predicting the vertical tracer distributions (carbon 14, methane, and nitrous oxide) are also discussed.
One-dimensional particle models for heat transfer analysis
NASA Astrophysics Data System (ADS)
Bufferand, H.; Ciraolo, G.; Ghendrih, Ph; Tamain, P.; Bagnoli, F.; Lepri, S.; Livi, R.
2010-11-01
For a better understanding of Spitzer-Härm closure restrictions and for estimating the relevancy of this expression when collisionnality decreases, an effort is done in developing simple models that aim at catching the physics of the transition from conductive to free-streaming heat flux. In that perspective, one-dimensional particle models are developed to study heat transfer properties in the direction parallel to the magnetic field in tokamaks. These models are based on particles that carry energy at a specific velocity and that can interact with each other or with heat sources. By adjusting the particle dynamics and particle interaction properties, it is possible to generate a broad range of models of growing complexity. The simplest models can be solved analytically and are used to link particle behavior to general macroscopic heat transfer properties. In particular, some configurations recover Fourier's law and make possible to investigate the dependance of thermal conductivity on temperature. Besides, some configurations where local balance is lost require defining non local expression for heat flux. These different classes of models could then be linked to different plasma configurations and used to study transition from collisional to non-collisional plasma.
Two-dimensional lattice-fluid model with waterlike anomalies.
Buzano, C; De Stefanis, E; Pelizzola, A; Pretti, M
2004-06-01
We investigate a lattice-fluid model defined on a two-dimensional triangular lattice, with the aim of reproducing qualitatively some anomalous properties of water. Model molecules are of the "Mercedes Benz" type, i.e., they possess a D3 (equilateral triangle) symmetry, with three bonding arms. Bond formation depends both on orientation and local density. We work out phase diagrams, response functions, and stability limits for the liquid phase, making use of a generalized first order approximation on a triangle cluster, whose accuracy is verified, in some cases, by Monte Carlo simulations. The phase diagram displays one ordered (solid) phase which is less dense than the liquid one. At fixed pressure the liquid phase response functions show the typical anomalous behavior observed in liquid water, while, in the supercooled region, a reentrant spinodal is observed. PMID:15244571
Two-dimensional lattice-fluid model with waterlike anomalies
NASA Astrophysics Data System (ADS)
Buzano, C.; de Stefanis, E.; Pelizzola, A.; Pretti, M.
2004-06-01
We investigate a lattice-fluid model defined on a two-dimensional triangular lattice, with the aim of reproducing qualitatively some anomalous properties of water. Model molecules are of the “Mercedes Benz” type, i.e., they possess a D3 (equilateral triangle) symmetry, with three bonding arms. Bond formation depends both on orientation and local density. We work out phase diagrams, response functions, and stability limits for the liquid phase, making use of a generalized first order approximation on a triangle cluster, whose accuracy is verified, in some cases, by Monte Carlo simulations. The phase diagram displays one ordered (solid) phase which is less dense than the liquid one. At fixed pressure the liquid phase response functions show the typical anomalous behavior observed in liquid water, while, in the supercooled region, a reentrant spinodal is observed.
Heat string model of bi-dimensional dc Glidarc
NASA Astrophysics Data System (ADS)
Pellerin, S.; Richard, F.; Chapelle, J.; Cormier, J.-M.; Musiol, K.
2000-10-01
The gliding arc discharge (`Glidarc') is the subject of renewed interest in application to a variety of chemical reactions. The gliding arc creates a weakly ionized gas `string' between two horn-shaped electrodes. In this paper, we present a simple model for a bi-dimensional dc Glidarc working in air, in which the conducting zone of the discharge that is heated by the Joule effect is considered as a hot wire cooled by an air flow. Inside this wire, the heat transfer results from thermal conduction. The exchange of heat between the hot wire and the air flow is assured by convection and depends on the wire radius and the relative velocity of the arc with respect to the gas flow. The model correctly describes experimental results and allows us to predict the working parameters of the Glidarc in different experimental situations.
Three-Dimensional Numerical Modeling of Magnetohydrodynamic Augmented Propulsion Experiment
NASA Technical Reports Server (NTRS)
Turner, M. W.; Hawk, C. W.; Litchford, R. J.
2009-01-01
Over the past several years, NASA Marshall Space Flight Center has engaged in the design and development of an experimental research facility to investigate the use of diagonalized crossed-field magnetohydrodynamic (MHD) accelerators as a possible thrust augmentation device for thermal propulsion systems. In support of this effort, a three-dimensional numerical MHD model has been developed for the purpose of analyzing and optimizing accelerator performance and to aid in understanding critical underlying physical processes and nonideal effects. This Technical Memorandum fully summarizes model development efforts and presents the results of pretest performance optimization analyses. These results indicate that the MHD accelerator should utilize a 45deg diagonalization angle with the applied current evenly distributed over the first five inlet electrode pairs. When powered at 100 A, this configuration is expected to yield a 50% global efficiency with an 80% increase in axial velocity and a 50% increase in centerline total pressure.
Three-family unification in higher dimensional models
Mimura, Yukihiro; Nandi, S.
2009-05-01
In orbifold models, gauge, Higgs, and the matter fields can be unified in one multiplet from the compactification of higher dimensional supersymmetric gauge theory. We study how three families of chiral fermions can be unified in the gauge multiplet. The bulk gauge interaction includes the Yukawa interactions to generate masses for quarks and leptons after the electroweak symmetry is broken. The bulk Yukawa interaction has global or gauged flavor symmetry originating from the R symmetry or bulk gauge symmetry, and the Yukawa structure is restricted. When the global and gauged flavor symmetries are broken by orbifold compactification, the remaining gauge symmetry which contains the standard model gauge symmetry is restricted. The restrictions from the bulk flavor symmetries can provide explanations of fermion mass hierarchy.
Two-Dimensional Massless Light Front Fields and Solvable Models
NASA Astrophysics Data System (ADS)
Martinovic̆, L'ubomír; Grangé, Pierre
2016-07-01
Quantum field theory formulated in terms of light front (LF) variables has a few attractive as well as some puzzling features. The latter hindered a wider acceptance of LF methods. In two space-time dimensions, it has been a long-standing puzzle how to correctly quantize massless fields, in particular fermions. Here we show that two-dimensional massless LF fields (scalar and fermion) can be recovered in a simple way as limits of the corresponding massive fields and thereby quantized without any loss of physical information. Bosonization of the fermion field then follows in a straightforward manner and the solvable models can be studied directly in the LF theory. We sketch the LF operator solution of the Thirring-Wess model and also point out the closeness of the massless LF fields to those of conformal field theory.
Two-dimensional MHD generator model. [GEN code
Geyer, H. K.; Ahluwalia, R. K.; Doss, E. D.
1980-09-01
A steady state, two-dimensional MHD generator code, GEN, is presented. The code solves the equations of conservation of mass, momentum, and energy, using a Von Mises transformation and a local linearization of the equations. By splitting the source terms into a part proportional to the axial pressure gradient and a part independent of the gradient, the pressure distribution along the channel is easily obtained to satisfy various criteria. Thus, the code can run effectively in both design modes, where the channel geometry is determined, and analysis modes, where the geometry is previously known. The code also employs a mixing length concept for turbulent flows, Cebeci and Chang's wall roughness model, and an extension of that model to the effective thermal diffusities. Results on code validation, as well as comparisons of skin friction and Stanton number calculations with experimental results, are presented.
One-dimensional Ising model with multispin interactions
NASA Astrophysics Data System (ADS)
Turban, Loïc
2016-09-01
We study the spin-1/2 Ising chain with multispin interactions K involving the product of m successive spins, for general values of m. Using a change of spin variables the zero-field partition function of a finite chain is obtained for free and periodic boundary conditions and we calculate the two-spin correlation function. When placed in an external field H the system is shown to be self-dual. Using another change of spin variables the one-dimensional Ising model with multispin interactions in a field is mapped onto a zero-field rectangular Ising model with first-neighbour interactions K and H. The 2D system, with size m × N/m, has the topology of a cylinder with helical BC. In the thermodynamic limit N/m\\to ∞ , m\\to ∞ , a 2D critical singularity develops on the self-duality line, \\sinh 2K\\sinh 2H=1.
One-dimensional Kondo lattice model at quarter filling
NASA Astrophysics Data System (ADS)
Xavier, J. C.; Miranda, E.
2008-10-01
We revisit the problem of the quarter-filled one-dimensional Kondo lattice model, for which the existence of a dimerized phase and a nonzero charge gap had been reported by Xavier [Phys. Rev. Lett. 90, 247204 (2003)]. Recently, some objections were raised claiming that the system is neither dimerized nor has a charge gap. In the interest of clarifying this important issue, we show that these objections are based on results obtained under conditions in which the dimer order is artificially suppressed. We use the incontrovertible dimerized phase of the Majumdar-Ghosh point of the J1-J2 Heisenberg model as a paradigm with which to illustrate this artificial suppression. Finally, by means of extremely accurate density-matrix renormalization-group calculations, we show that the charge gap is indeed nonzero in the dimerized phase.
Li, P.W.; Daisaka, H.; Kawaguchi, Y.; Yabe, A.; Hishida, K.; Maeda, M.
1999-07-01
The turbulent characteristics of a surfactant water solution in changing from drag-reducing flow to turbulent flow inside a two-dimensional smooth channel and in changing from turbulent flow to drag-reducing flow in the same channel with a mesh plug were investigated through LDV measurement in this study. The mesh plug was used to exert high shear stress to destroy micelle structures in the surfactant solution so that turbulence could be produced for better heat transfer. The two-component LDV system was installed on a movable platform, which could be moved streamwise of the flow to measure the two-dimensional velocity at different stations downstream from the mesh plug. The surfactant tested was Cetyltrimethyl ammonium chloride (C{sub 16}H{sub 33}N(CH{sub 3}){sub 3}Cl, abbreviated as CTAC). Local tap water was used as solvent and same weight concentration of sodium salicylate was used as the counter-ion material. The investigation of turbulent parameters for the drag-reducing flow with increasing Reynolds number showed that when the Reynolds number exceeded the drag-reducing region, the turbulent character was the same as that of water. The turbulent parameters of surfactant flow downstream the mesh plug showed that the high heat transfer region had the same turbulent intensity as that of water flow. As the critical Reynolds number was approached, it became easier to obtain such a turbulent region by mesh plug. In such cases, the mesh helped to create high wall shear stress and therefore to destroy the super-ordered structures of rod-like micelles for introducing turbulence. However, it was found that the turbulent intensities of the velocity gradually decreased to the same as those of drag-reducing flow downstream from the mesh because the mesh plug only produced a local high shear stress.
Three-dimensional lattice Boltzmann model for compressible flows.
Sun, Chenghai; Hsu, Andrew T
2003-07-01
A three-dimensional compressible lattice Boltzmann model is formulated on a cubic lattice. A very large particle-velocity set is incorporated in order to enable a greater variation in the mean velocity. Meanwhile, the support set of the equilibrium distribution has only six directions. Therefore, this model can efficiently handle flows over a wide range of Mach numbers and capture shock waves. Due to the simple form of the equilibrium distribution, the fourth-order velocity tensors are not involved in the formulation. Unlike the standard lattice Boltzmann model, no special treatment is required for the homogeneity of fourth-order velocity tensors on square lattices. The Navier-Stokes equations were recovered, using the Chapman-Enskog method from the Bhatnagar-Gross-Krook (BGK) lattice Boltzmann equation. The second-order discretization error of the fluctuation velocity in the macroscopic conservation equation was eliminated by means of a modified collision invariant. The model is suitable for both viscous and inviscid compressible flows with or without shocks. Since the present scheme deals only with the equilibrium distribution that depends only on fluid density, velocity, and internal energy, boundary conditions on curved wall are easily implemented by an extrapolation of macroscopic variables. To verify the scheme for inviscid flows, we have successfully simulated a three-dimensional shock-wave propagation in a box and a normal shock of Mach number 10 over a wedge. As an application to viscous flows, we have simulated a flat plate boundary layer flow, flow over a cylinder, and a transonic flow over a NACA0012 airfoil cascade. PMID:12935242
Accelerating transient simulation of linear reduced order models.
Thornquist, Heidi K.; Mei, Ting; Keiter, Eric Richard; Bond, Brad
2011-10-01
Model order reduction (MOR) techniques have been used to facilitate the analysis of dynamical systems for many years. Although existing model reduction techniques are capable of providing huge speedups in the frequency domain analysis (i.e. AC response) of linear systems, such speedups are often not obtained when performing transient analysis on the systems, particularly when coupled with other circuit components. Reduced system size, which is the ostensible goal of MOR methods, is often insufficient to improve transient simulation speed on realistic circuit problems. It can be shown that making the correct reduced order model (ROM) implementation choices is crucial to the practical application of MOR methods. In this report we investigate methods for accelerating the simulation of circuits containing ROM blocks using the circuit simulator Xyce.
A reduced temperature solid oxide fuel cell with three-dimensionally ordered macroporous cathode
Liang, B.; Suzuki, T.; Hamamoto, K.; Yamaguchi, T.; Sumi, H.; Fujishiro, Y.; Ingram, B. J.; Carter, J. D.
2012-01-01
Three-dimensionally ordered macroporous cathode was fabricated for a zirconia based micro-tubular solid oxide fuel cells (SOFCs). Three different cathodes (cathode A, no pore former; cathode B, with pore former (1.5 {micro}m in diameter); cathode C, with pore former (0.8 {micro}m in diameter)) were compared to investigate how the microstructure of it affected the cell performance at various operating temperatures. Micro-sized pores were well distributed within cathode B and C. The total porosity of cathode A is 35%, while it respectively reached 42 and 50% for cathodes B and C. At the same time, the specific surface area of them was 28.8 and 52.0% larger than that of the cathode A. As a result, the peak power density of the zirconia based cell, with cathode C, was 0.25 and 0.56 W cm{sup -2} at 550 and 600 C, while the respective value was just 0.11 and 0.30 W cm{sup -2} for the cell with cathode A. Thus, optimizing microstructure of cathode should be one of the best approaches for lowering the operating temperature for SOFCs.
Reddy, Jithender G; Hosur, Ramakrishna V
2014-07-01
Resonance assignment in intrinsically disordered proteins poses a great challenge because of poor chemical shift dispersion in most of the nuclei that are commonly monitored. Reduced dimensionality (RD) experiments where more than one nuclei are co-evolved simultaneously along one of the time axes of a multi-dimensional NMR experiment help to resolve this problem partially, and one can conceive of different combinations of nuclei for co-evolution depending upon the magnetization transfer pathways and the desired information content in the spectrum. Here, we present a RD experiment, (4,3)D-hNCOCAnH, which uses a combination of CO and CA chemical shifts along one of the axes of the 3-dimensional spectrum, to improve spectral dispersion on one hand, and provide information on four backbone atoms of every residue-HN, N, CA and CO chemical shifts-from a single experiment, on the other. The experiment provides multiple unidirectional sequential (i → i - 1) amide (1)H correlations along different planes of the spectrum enabling easy assignment of most nuclei along the protein backbone. Occasional ambiguities that may arise due to degeneracy of amide proton chemical shifts are proposed to be resolved using the HNN experiment described previously (Panchal et al. in J Biomol NMR 20:135-147, 2001). Applications of the experiment and the assignment protocol have been demonstrated using intrinsically disordered α-synuclein (140 aa) protein. PMID:24854885
Turbulence modeling in three-dimensional stenosed arterial bifurcations.
Banks, J; Bressloff, N W
2007-02-01
Under normal healthy conditions, blood flow in the carotid artery bifurcation is laminar. However, in the presence of a stenosis, the flow can become turbulent at the higher Reynolds numbers during systole. There is growing consensus that the transitional k-omega model is the best suited Reynolds averaged turbulence model for such flows. Further confirmation of this opinion is presented here by a comparison with the RNG k-epsilon model for the flow through a straight, nonbifurcating tube. Unlike similar validation studies elsewhere, no assumptions are made about the inlet profile since the full length of the experimental tube is simulated. Additionally, variations in the inflow turbulence quantities are shown to have no noticeable affect on downstream turbulence intensity, turbulent viscosity, or velocity in the k-epsilon model, whereas the velocity profiles in the transitional k-omega model show some differences due to large variations in the downstream turbulence quantities. Following this validation study, the transitional k-omega model is applied in a three-dimensional parametrically defined computer model of the carotid artery bifurcation in which the sinus bulb is manipulated to produce mild, moderate, and severe stenosis. The parametric geometry definition facilitates a powerful means for investigating the effect of local shape variation while keeping the global shape fixed. While turbulence levels are generally low in all cases considered, the mild stenosis model produces higher levels of turbulent viscosity and this is linked to relatively high values of turbulent kinetic energy and low values of the specific dissipation rate. The severe stenosis model displays stronger recirculation in the flow field with higher values of vorticity, helicity, and negative wall shear stress. The mild and moderate stenosis configurations produce similar lower levels of vorticity and helicity. PMID:17227097
THREE-DIMENSIONAL MODELING OF HOT JUPITER ATMOSPHERIC FLOWS
Rauscher, Emily; Menou, Kristen
2010-05-10
We present a three-dimensional hot Jupiter model, extending from 200 bar to 1 mbar, using the Intermediate General Circulation Model from the University of Reading. Our horizontal spectral resolution is T31 (equivalent to a grid of 48 x 96), with 33 logarithmically spaced vertical levels. A simplified (Newtonian) scheme is employed for the radiative forcing. We adopt a physical setup nearly identical to the model of HD 209458b by Cooper and Showman to facilitate a direct model inter-comparison. Our results are broadly consistent with theirs but significant differences also emerge. The atmospheric flow is characterized by a super-rotating equatorial jet, transonic wind speeds, and eastward advection of heat away from the dayside. We identify a dynamically induced temperature inversion ('stratosphere') on the planetary dayside and find that temperatures at the planetary limb differ systematically from local radiative equilibrium values, a potential source of bias for transit spectroscopic interpretations. While our model atmosphere is quasi-identical to that of Cooper and Showman and we solve the same meteorological equations, we use different algorithmic methods, spectral-implicit versus grid-explicit, which are known to yield fully consistent results in the Earth modeling context. The model discrepancies identified here indicate that one or both numerical methods do not faithfully capture all of the atmospheric dynamics at work in the hot Jupiter context. We highlight the emergence of a shock-like feature in our model, much like that reported recently by Showman et al., and suggest that improved representations of energy conservation may be needed in hot Jupiter atmospheric models, as emphasized by Goodman.
Modeling Meandering Channel by Two-Dimensional Shallow Water Equations
NASA Astrophysics Data System (ADS)
Yu, C.; Duan, J. G.
2014-12-01
This research is to simulate the process of channel meandering using a two-dimensional depth-averaged hydrodynamic model. The multiple interactions between unsteady flow, turbulence, secondary flow, nonequilibrium sediment transport and bank erosion are considered by the model. The governing equations are the 2D depth-averaged Reynolds-averaged Navier-Stokes (2D-RANS) equations and the Exner equation for bed elevation evolution. The Reynolds stresses are calculated by the k-ɛ turbulence model. The secondary flow, is modeled by the dispersion terms in momentum equations. The spatial lag between the instantaneous flow properties and the rate of sediment transport is simulated by the nonequilibrium sediment transport model. During the process of adaptation, the sediment transport rate gradually develops into the transport capacity of a given flow condition. The evolution of channel bed and bank is modeled by the general Exner equation that accounts for both vertical deformation of bed elevation as well as lateral migration of bank. The system of governing equations is solved by a semi-implicit finite volume method over the Cartesian mesh. The advective fluxes across each cell interface are simultaneously calculated by the extended HLL Riemann solver. At each time step, the diffusion terms in the governing equations are solved by the implicit Euler scheme. The source terms are discretized in a well-balanced way to retain the C-property of the proposed model. Application of the model to different test cases indicates that the model can correctly simulate different phases of meandering channel evolution which include streamwise migration, transverse migration and rotation of channel bends.
Low dimensional state-space representations for classical unsteady aerodynamic models
NASA Astrophysics Data System (ADS)
Brunton, Steven L.; Rowley, Clarence W.
2010-11-01
This work develops reduced order models for the unsteady aerodynamic forces on a small wing in response to agile maneuvers and gusts. In particular, the classical unsteady models of Wagner and Theodorsen are cast into a low-dimensional state-space framework. Low order state-space models are more computationally efficient than the classical formulations, and are well suited for modification with nonlinear dynamics and the application of control techniques. Reduced order models are obtained using the eigensystem realization algorithm on force data from the direct numerical simulation (DNS) of a pitching or plunging 2D flat plate at Reynolds numbers between 100 and 1000. Models are tested on rapid pitch and plunge maneuvers with a range of effective angle-of-attack. We evaluate the performance of the models based on agreement with results from DNS, in particular, the ability to reproduce lift forces over a range of pitching and plunging frequencies. Bode plots of the reduced order models, Wagner's and Theodorsen's methods, and DNS provide a concise assessment.
Two-dimensional dynamical drainage-flow model with Monte Carlo transport and diffusion calculations
Garrett, A.J.; Smith, F.G. III
1982-09-01
A simplified drainage flow model was developed from the equations of motion and the mass continuity equation in a terrain-following coordinate system. The equations were reduced to a two-dimensional system by vertically integrating over the drainage layer. A numerical solution for the drainage layer depth and wind field was obtained using a fourth order finite difference scheme. A Monte Carlo simulation was used to calculate the transport and diffusion of tracer gases. Model simulations of drainage flow have been compared to observations from the 1980 Geysers area experiments. The Geysers area is mountainous, with steep slopes, some of which are steeper than 10/sup 0/. The model predictions of wind direction are good, but with speeds are not predicted as accurately. Simulation of perfluorocarbon tracer concentrations were in good agreement with observed values. Maximum tracer concentration was predicted to within a factor of five. While predicted plume arrival was somewhat early, the model closely predicted the duration of the passage for plume concentrations greater than 0.5 ppt. The two-dimensional model was found to work equally well in simulating drainage flows over the Savannah River Plant (SRP) and surrounding terrain with slopes of around 1/sup 0/. The model correctly predicted that drainage winds at SRP are usually shallower than 60 m, which is the height at which meteorological towers measure the winds in the SRP production areas. The modest computational requirements of the model make it suitable for use in screening potential industrial sites.
Preliminary results of a three-dimensional radiative transfer model
O`Hirok, W.
1995-09-01
Clouds act as the primary modulator of the Earth`s radiation at the top of the atmosphere, within the atmospheric column, and at the Earth`s surface. They interact with both shortwave and longwave radiation, but it is primarily in the case of shortwave where most of the uncertainty lies because of the difficulties in treating scattered solar radiation. To understand cloud-radiative interactions, radiative transfer models portray clouds as plane-parallel homogeneous entities to ease the computational physics. Unfortunately, clouds are far from being homogeneous, and large differences between measurement and theory point to a stronger need to understand and model cloud macrophysical properties. In an attempt to better comprehend the role of cloud morphology on the 3-dimensional radiation field, a Monte Carlo model has been developed. This model can simulate broadband shortwave radiation fluxes while incorporating all of the major atmospheric constituents. The model is used to investigate the cloud absorption anomaly where cloud absorption measurements exceed theoretical estimates and to examine the efficacy of ERBE measurements and cloud field experiments. 3 figs.
A Three-Dimensional Computational Model of Collagen Network Mechanics
Lee, Byoungkoo; Zhou, Xin; Riching, Kristin; Eliceiri, Kevin W.; Keely, Patricia J.; Guelcher, Scott A.; Weaver, Alissa M.; Jiang, Yi
2014-01-01
Extracellular matrix (ECM) strongly influences cellular behaviors, including cell proliferation, adhesion, and particularly migration. In cancer, the rigidity of the stromal collagen environment is thought to control tumor aggressiveness, and collagen alignment has been linked to tumor cell invasion. While the mechanical properties of collagen at both the single fiber scale and the bulk gel scale are quite well studied, how the fiber network responds to local stress or deformation, both structurally and mechanically, is poorly understood. This intermediate scale knowledge is important to understanding cell-ECM interactions and is the focus of this study. We have developed a three-dimensional elastic collagen fiber network model (bead-and-spring model) and studied fiber network behaviors for various biophysical conditions: collagen density, crosslinker strength, crosslinker density, and fiber orientation (random vs. prealigned). We found the best-fit crosslinker parameter values using shear simulation tests in a small strain region. Using this calibrated collagen model, we simulated both shear and tensile tests in a large linear strain region for different network geometry conditions. The results suggest that network geometry is a key determinant of the mechanical properties of the fiber network. We further demonstrated how the fiber network structure and mechanics evolves with a local formation, mimicking the effect of pulling by a pseudopod during cell migration. Our computational fiber network model is a step toward a full biomechanical model of cellular behaviors in various ECM conditions. PMID:25386649
An efficient chemical kinetics solver using high dimensional model representation
Shorter, J.A.; Ip, P.C.; Rabitz, H.A.
1999-09-09
A high dimensional model representation (HDMR) technique is introduced to capture the input-output behavior of chemical kinetic models. The HDMR expresses the output chemical species concentrations as a rapidly convergent hierarchical correlated function expansion in the input variables. In this paper, the input variables are taken as the species concentrations at time t{sub i} and the output is the concentrations at time t{sub i} + {delta}, where {delta} can be much larger than conventional integration time steps. A specially designed set of model runs is performed to determine the correlated functions making up the HDMR. The resultant HDMR can be used to (1) identify the key input variables acting independently or cooperatively on the output, and (2) create a high speed fully equivalent operational model (FEOM) serving to replace the original kinetic model and its differential equation solver. A demonstration of the HDMR technique is presented for stratospheric chemical kinetics. The FEOM proved to give accurate and stable chemical concentrations out to long times of many years. In addition, the FEOM was found to be orders of magnitude faster than a conventional stiff equation solver. This computational acceleration should have significance in many chemical kinetic applications.
Three-dimensional static modeling of the lumbar spine.
Karadogan, Ernur; Williams, Robert L
2012-08-01
This paper presents three-dimensional static modeling of the human lumbar spine to be used in the formation of anatomically-correct movement patterns for a fully cable-actuated robotic lumbar spine which can mimic in vivo human lumbar spine movements to provide better hands-on training for medical students. The mathematical model incorporates five lumbar vertebrae between the first lumbar vertebra and the sacrum, with dimensions of an average adult human spine. The vertebrae are connected to each other by elastic elements, torsional springs and a spherical joint located at the inferoposterior corner in the mid-sagittal plane of the vertebral body. Elastic elements represent the ligaments that surround the facet joints and the torsional springs represent the collective effect of intervertebral disc which plays a major role in balancing torsional load during upper body motion and the remaining ligaments that support the spinal column. The elastic elements and torsional springs are considered to be nonlinear. The nonlinear stiffness constants for six motion types were solved using a multiobjective optimization technique. The quantitative comparison between the angles of rotations predicted by the proposed model and in the experimental data confirmed that the model yields angles of rotation close to the experimental data. The main contribution is that the new model can be used for all motions while the experimental data was only obtained at discrete measurement points. PMID:22938364
Three-dimensional lattice Boltzmann model for magnetic reconnection
Mendoza, M.; Munoz, J. D.
2008-02-15
We develop a three-dimensional (3D) lattice Boltzmann model that recovers in the continuous limit the two-fluids theory for plasmas, and consequently includes the generalized Ohm's law. The model reproduces the magnetic reconnection process just by giving the right initial equilibrium conditions in the magnetotail, without any assumption on the resistivity in the diffusive region. In this model, the plasma is handled similar to two fluids with an interaction term, each one with distribution functions associated to a cubic lattice with 19 velocities (D3Q19). The electromagnetic fields are considered as a third fluid with an external force on a cubic lattice with 13 velocities (D3Q13). The model can simulate either viscous fluids in the incompressible limit or nonviscous compressible fluids, and successfully reproduces both the Hartmann flow and the magnetic reconnection in the magnetotail. The reconnection rate in the magnetotail obtained with this model lies between R=0.062 and R=0.073, in good agreement with the observations.
Two-dimensional model for circulating fluidized-bed reactors
Schoenfelder, H.; Kruse, M.; Werther, J.
1996-07-01
Circulating fluidized bed reactors are widely used for the combustion of coal in power stations as well as for the cracking of heavy oil in the petroleum industry. A two-dimensional reactor model for circulating fluidized beds (CFB) was studied based on the assumption that at every location within the riser, a descending dense phase and a rising lean phase coexist. Fluid mechanical variables may be calculated from one measured radial solids flux profile (upward and downward). The internal mass-transfer behavior is described on the basis of tracer gas experiments. The CFB reactor model was tested against data from ozone decomposition experiments in a CFB cold flow model (15.6-m height, 0.4-m ID) operated in the ranges 2.5--4.5 m/s and 9--45 kg/(m{sup 2}{center_dot}s) of superficial gas velocity and solids mass flux, respectively. Based on effective reaction rate constants determined from the ozone exit concentration, the model was used to predict the spatial reactant distribution within the reactor. Model predictions agreed well with measurements.
Three-dimensional lattice Boltzmann model for magnetic reconnection.
Mendoza, M; Muñoz, J D
2008-02-01
We develop a three-dimensional (3D) lattice Boltzmann model that recovers in the continuous limit the two-fluids theory for plasmas, and consequently includes the generalized Ohm's law. The model reproduces the magnetic reconnection process just by giving the right initial equilibrium conditions in the magnetotail, without any assumption on the resistivity in the diffusive region. In this model, the plasma is handled similar to two fluids with an interaction term, each one with distribution functions associated to a cubic lattice with 19 velocities (D3Q19). The electromagnetic fields are considered as a third fluid with an external force on a cubic lattice with 13 velocities (D3Q13). The model can simulate either viscous fluids in the incompressible limit or nonviscous compressible fluids, and successfully reproduces both the Hartmann flow and the magnetic reconnection in the magnetotail. The reconnection rate in the magnetotail obtained with this model lies between R=0.062 and R=0.073, in good agreement with the observations. PMID:18352154
Interpolation-based reduced-order modelling for steady transonic flows via manifold learning
NASA Astrophysics Data System (ADS)
Franz, T.; Zimmermann, R.; Görtz, S.; Karcher, N.
2014-03-01
This paper presents a parametric reduced-order model (ROM) based on manifold learning (ML) for use in steady transonic aerodynamic applications. The main objective of this work is to derive an efficient ROM that exploits the low-dimensional nonlinear solution manifold to ensure an improved treatment of the nonlinearities involved in varying the inflow conditions to obtain an accurate prediction of shocks. The reduced-order representation of the data is derived using the Isomap ML method, which is applied to a set of sampled computational fluid dynamics (CFD) data. In order to develop a ROM that has the ability to predict approximate CFD solutions at untried parameter combinations, Isomap is coupled with an interpolation method to capture the variations in parameters like the angle of attack or the Mach number. Furthermore, an approximate local inverse mapping from the reduced-order representation to the full CFD solution space is introduced. The proposed ROM, called Isomap+I, is applied to the two-dimensional NACA 64A010 airfoil and to the 3D LANN wing. The results are compared to those obtained by proper orthogonal decomposition plus interpolation (POD+I) and to the full-order CFD model.
NASA Astrophysics Data System (ADS)
Wang, Kai-Jun; Peng, Yu-Xiang; Wang, Lei; Liu, Ling-Hong; Li, Ze-Jun; Xu, Liang; Wang, Xin-Jun; Li, Jian-Bo; He, Meng-Dong
2016-04-01
We investigate the transmission characteristics of a one-dimensional metallic grating covered by a reduced cytochrome (Cyt) c molecule layer by using the finite-difference time-domain (FDTD) method. It is found that the introduction of reduced Cyt c molecule layer leads to a transmission dip due to the plasmon resonance energy transfer (PRET) from metallic grating to Cyt c molecules. The transmission dip depth can be controlled by the period of metallic grating, the width and length of slit, and the Cyt c molecule layer number, while the transmission dip wavelength is unchanged with these parameters. The findings expand our understanding of the PRET phenomenon and have potential applications in molecule identification and detection.
Wagner, M.
2010-10-01
The inherent variability of the solar resource presents a unique challenge for CSP systems. Incident solar irradiation can fluctuate widely over a short time scale, but plant performance must be assessed for long time periods. As a result, annual simulations with hourly (or sub-hourly) timesteps are the norm in CSP analysis. A highly detailed power cycle model provides accuracy but tends to suffer from prohibitively long run-times; alternatively, simplified empirical models can run quickly but don?t always provide enough information, accuracy, or flexibility for the modeler. The ideal model for feasibility-level analysis incorporates both the detail and accuracy of a first-principle model with the low computational load of a regression model. The work presented in this paper proposes a methodology for organizing and extracting information from the performance output of a detailed model, then using it to develop a flexible reduced-order regression model in a systematic and structured way. A similar but less generalized approach for characterizing power cycle performance and a reduced-order modeling methodology for CFD analysis of heat transfer from electronic devices have been presented. This paper builds on these publications and the non-dimensional approach originally described.
Ng, K T; Yan, R
2003-11-01
Various investigators have used the monodomain model to study cardiac propagation behaviour. In many cases, the governing non-linear parabolic equation is solved using the finite-difference method. An adequate discretisation of cardiac tissue with realistic dimensions, however, often leads to a large model size that is computationally demanding. Recently, it has been demonstrated, for a two-dimensional homogeneous monodomain, that the Chebyshev pseudospectral method can offer higher computational efficiency than the finite-difference technique. Here, an extension of the pseudospectral approach to a three-dimensional inhomogeneous case with fibre rotation is presented. The unknown transmembrane potential is expanded in terms of Chebyshev polynomial trial functions, and the monodomain equation is enforced at the Gauss-Lobatto node points. The forward Euler technique is used to advance the solution in time. Numerical results are presented that demonstrate that the Chebyshev pseudospectral method offered an even larger improvement in computational performance over the finite-difference method in the three-dimensional case. Specifically, the pseudospectral method allowed the number of nodes to be reduced by approximately 85 times, while the same solution accuracy was maintained. Depending on the model size, simulations were performed with approximately 18-41 times less memory and approximately 99-169 times less CPU time. PMID:14686586
High performance computing for three-dimensional agent-based molecular models.
Pérez-Rodríguez, G; Pérez-Pérez, M; Fdez-Riverola, F; Lourenço, A
2016-07-01
Agent-based simulations are increasingly popular in exploring and understanding cellular systems, but the natural complexity of these systems and the desire to grasp different modelling levels demand cost-effective simulation strategies and tools. In this context, the present paper introduces novel sequential and distributed approaches for the three-dimensional agent-based simulation of individual molecules in cellular events. These approaches are able to describe the dimensions and position of the molecules with high accuracy and thus, study the critical effect of spatial distribution on cellular events. Moreover, two of the approaches allow multi-thread high performance simulations, distributing the three-dimensional model in a platform independent and computationally efficient way. Evaluation addressed the reproduction of molecular scenarios and different scalability aspects of agent creation and agent interaction. The three approaches simulate common biophysical and biochemical laws faithfully. The distributed approaches show improved performance when dealing with large agent populations while the sequential approach is better suited for small to medium size agent populations. Overall, the main new contribution of the approaches is the ability to simulate three-dimensional agent-based models at the molecular level with reduced implementation effort and moderate-level computational capacity. Since these approaches have a generic design, they have the major potential of being used in any event-driven agent-based tool. PMID:27372059
A novel deployment scheme based on three-dimensional coverage model for wireless sensor networks.
Xiao, Fu; Yang, Yang; Wang, Ruchuan; Sun, Lijuan
2014-01-01
Coverage pattern and deployment strategy are directly related to the optimum allocation of limited resources for wireless sensor networks, such as energy of nodes, communication bandwidth, and computing power, and quality improvement is largely determined by these for wireless sensor networks. A three-dimensional coverage pattern and deployment scheme are proposed in this paper. Firstly, by analyzing the regular polyhedron models in three-dimensional scene, a coverage pattern based on cuboids is proposed, and then relationship between coverage and sensor nodes' radius is deduced; also the minimum number of sensor nodes to maintain network area's full coverage is calculated. At last, sensor nodes are deployed according to the coverage pattern after the monitor area is subdivided into finite 3D grid. Experimental results show that, compared with traditional random method, sensor nodes number is reduced effectively while coverage rate of monitor area is ensured using our coverage pattern and deterministic deployment scheme. PMID:25045747
Higher-dimensional charged shear-free relativistic models with heat flux
NASA Astrophysics Data System (ADS)
Nyonyi, Y.; Maharaj, S. D.; Govinder, K. S.
2014-07-01
We analyze shear-free spherically symmetric relativistic models of gravitating fluids with heat flow and electric charge defined on higher-dimensional manifolds. The solution to the Einstein-Maxwell system is governed by the pressure isotropy condition, which depends on the space-time dimension. We study this highly nonlinear partial differential equation using Lie's group theoretic approach. The Lie symmetry generators that leave the equation invariant are determined. We provide exact solutions to the gravitational potentials using the first symmetry admitted by the equation. Our new exact solutions contain the earlier results for the four-dimensional case. Using the other Lie generators, we are able to provide solutions to the gravitational potentials or reduce the order of the master equation to a first order nonlinear differential equation. We also find expressions for the causal and Eckart temperatures and show their dependence on the dimension.
Durbin, T.J.; Kapple, G.W.; Freckleton, J.R.
1978-01-01
The Salinas Valley ground-water basin is in central coastal California. The ground-water basin extends from Monterey Bay southeastward along the Salinas River to San Ardo, a distance of about 70 miles, and has a maximum thickness of about 2,000 feet. Annual recharge to the ground-water basin, which is derived mostly from the Salinas River, is about 290,000 acre-feet. Annual discharge, which is mostly from pumpage but also includes the consumptive use of ground water by riparian vegetation along the Salinas River, is about 507,000 acre-feet. About 45 percent of the pumpage, or about 217,000 acre-feet of water annually, returns to the ground-water system. A system of interacting hydrologic models was developed for the Salinas Valley. These models include the small-stream model, river model, two-dimensional ground-water model, and three-dimensional ground-water model. The small-stream model simulates ground-water recharge from small streams that are tributary to the Salinas River. The river model simulates ground-water recharge from the surface-water discharge in the Salinas River. The two-dimensional and three-dimensional ground-water models simulate hydraulic head in the ground-water basin. (Woodard-USGS)
Three Dimensional TEM Forward Modeling Using FDTD Accelerated by GPU
NASA Astrophysics Data System (ADS)
Li, Z.; Huang, Q.
2015-12-01
Three dimensional inversion of transient electromagnetic (TEM) data is still challenging. The inversion speed mostly depends on the forward modeling. Finite-difference time-domain (FDTD) method is one of the popular forward modeling scheme. In an explicit type, which is based on the Du Fort-Frankel scheme, the time step is under the constraint of quasi-static approximation. Often an upward-continuation boundary condition (UCBC) is applied on the earth-air surface to avoid time stepping in the model air. However, UCBC is not suitable for models with topography and has a low parallel efficiency. Modeling without UCBC may cause a much smaller time step because of the resistive attribute of the air and the quasi-static constraint, which may also low the efficiency greatly. Our recent research shows that the time step in the model air is not needed to be constrained by the quasi-static approximation, which can let the time step without UCBC much closer to that with UCBC. The parallel performance of FDTD is then largely released. On a computer with a 4-core CPU, this newly developed method is obviously faster than the method using UCBC. Besides, without UCBC, this method can be easily accelerated by Graphics Processing Unit (GPU). On a computer with a CPU of 4790k@4.4GHz and a GPU of GTX 970, the speed accelerated by CUDA is almost 10 times of that using CPU only. For a model with a grid size of 140×140×130, if the conductivity of the model earth is 0.02S/m, and the minimal space interval is 15m, it takes only 80 seconds to evolve the field from excitation to 0.032s.
Information theoretic aspects of the two-dimensional Ising model.
Lau, Hon Wai; Grassberger, Peter
2013-02-01
We present numerical results for various information theoretic properties of the square lattice Ising model. First, using a bond propagation algorithm, we find the difference 2H(L)(w)-H(2L)(w) between entropies on cylinders of finite lengths L and 2L with open end cap boundaries, in the limit L→∞. This essentially quantifies how the finite length correction for the entropy scales with the cylinder circumference w. Secondly, using the transfer matrix, we obtain precise estimates for the information needed to specify the spin state on a ring encircling an infinitely long cylinder. Combining both results, we obtain the mutual information between the two halves of a cylinder (the "excess entropy" for the cylinder), where we confirm with higher precision but for smaller systems the results recently obtained by Wilms et al., and we show that the mutual information between the two halves of the ring diverges at the critical point logarithmically with w. Finally, we use the second result together with Monte Carlo simulations to show that also the excess entropy of a straight line of n spins in an infinite lattice diverges at criticality logarithmically with n. We conjecture that such logarithmic divergence happens generically for any one-dimensional subset of sites at any two-dimensional second-order phase transition. Comparing straight lines on square and triangular lattices with square loops and with lines of thickness 2, we discuss questions of universality. PMID:23496480
Information theoretic aspects of the two-dimensional Ising model
NASA Astrophysics Data System (ADS)
Lau, Hon Wai; Grassberger, Peter
2013-02-01
We present numerical results for various information theoretic properties of the square lattice Ising model. First, using a bond propagation algorithm, we find the difference 2HL(w)-H2L(w) between entropies on cylinders of finite lengths L and 2L with open end cap boundaries, in the limit L→∞. This essentially quantifies how the finite length correction for the entropy scales with the cylinder circumference w. Secondly, using the transfer matrix, we obtain precise estimates for the information needed to specify the spin state on a ring encircling an infinitely long cylinder. Combining both results, we obtain the mutual information between the two halves of a cylinder (the “excess entropy” for the cylinder), where we confirm with higher precision but for smaller systems the results recently obtained by Wilms , and we show that the mutual information between the two halves of the ring diverges at the critical point logarithmically with w. Finally, we use the second result together with Monte Carlo simulations to show that also the excess entropy of a straight line of n spins in an infinite lattice diverges at criticality logarithmically with n. We conjecture that such logarithmic divergence happens generically for any one-dimensional subset of sites at any two-dimensional second-order phase transition. Comparing straight lines on square and triangular lattices with square loops and with lines of thickness 2, we discuss questions of universality.
A zero dimensional model of lithium-sulfur batteries during charge and discharge.
Marinescu, Monica; Zhang, Teng; Offer, Gregory J
2016-01-01
Lithium-sulfur cells present an attractive alternative to Li-ion batteries due to their large energy density, safety, and possible low cost. Their successful commercialisation is dependent on improving their performance, but also on acquiring sufficient understanding of the underlying mechanisms to allow for the development of predictive models for operational cells. To address the latter, we present a zero dimensional model that predicts many of the features observed in the behaviour of a lithium-sulfur cell during charge and discharge. The model accounts for two electrochemical reactions via the Nernst formulation, power limitations through Butler-Volmer kinetics, and precipitation/dissolution of one species, including nucleation. It is shown that the flat shape of the low voltage plateau typical of the lithium-sulfur cell discharge is caused by precipitation. During charge, it is predicted that the dissolution can act as a bottleneck, because for large enough currents the amount that dissolves becomes limited. This results in reduced charge capacity and an earlier onset of the high plateau reaction, such that the two voltage plateaus merge. By including these effects, the model improves on the existing zero dimensional models, while requiring considerably fewer input parameters and computational resources than one dimensional models. The model also predicts that, due to precipitation, the customary way of experimentally obtaining the open circuit voltage from a low rate discharge might not be suitable for lithium-sulfur. This model can provide the basis for mechanistic studies, identification of dominant effects in a real cell, predictions of operational behaviour under realistic loads, and control algorithms for applications. PMID:26618508
A reduced grid model for shallow flows on the sphere
Reisner, J.M.; Margolin, L.G.; Smolarkiewicz, P.K.
1995-09-01
The authors describe a numerical model for simulating shallow water flows on a rotating sphere. The model is augmented by a reduced grid capability that increases the allowable time step based on stability requirements, and leads to significant improvements in computational efficiency. The model is based on finite difference techniques, and in particular on the nonoscillatory forward-in-time advection scheme MPDATA. They have implemented the model on the massively parallel CM-5, and have used it to simulate shallow water flows representative of global atmospheric motions. Here they present simulations of two flows, the Rossby-Haurwitz wave of period four, a nearly steady pattern with a complex balance of large and small scale motions, and also a zonal flow perturbed by an obstacle. They compare the accuracy and efficiency of using the reduced grid option with that of the original model. The authors also present simulations at several levels of resolution to show how the efficiency of the model scales with problem size.
Cluster-based reduced-order modelling of shear flows
NASA Astrophysics Data System (ADS)
Kaiser, Eurika; Noack, Bernd R.; Cordier, Laurent; Spohn, Andreas; Segond, Marc; Abel, Markus; Daviller, Guillaume; Morzyński, Marek; Östh, Jan; Krajnović, Siniša; Niven, Robert K.
2014-12-01
Cluster-based reduced-order modelling (CROM) builds on the pioneering works of Gunzburger's group in cluster analysis [1] and Eckhardt's group in transition matrix models [2] and constitutes a potential alternative to reduced-order models based on a proper-orthogonal decomposition (POD). This strategy frames a time-resolved sequence of flow snapshots into a Markov model for the probabilities of cluster transitions. The information content of the Markov model is assessed with a Kullback-Leibler entropy. This entropy clearly discriminates between prediction times in which the initial conditions can be inferred by backward integration and the predictability horizon after which all information about the initial condition is lost. This approach is exemplified for a class of fluid dynamical benchmark problems like the periodic cylinder wake, the spatially evolving incompressible mixing layer, the bi-modal bluff body wake, and turbulent jet noise. For these examples, CROM is shown to distil nontrivial quasi-attractors and transition processes. CROM has numerous potential applications for the systematic identification of physical mechanisms of complex dynamics, for comparison of flow evolution models, and for the identification of precursors to desirable and undesirable events.
Reducing equifinality of hydrological models by integrating Functional Streamflow Disaggregation
NASA Astrophysics Data System (ADS)
Lüdtke, Stefan; Apel, Heiko; Nied, Manuela; Carl, Peter; Merz, Bruno
2014-05-01
A universal problem of the calibration of hydrological models is the equifinality of different parameter sets derived from the calibration of models against total runoff values. This is an intrinsic problem stemming from the quality of the calibration data and the simplified process representation by the model. However, discharge data contains additional information which can be extracted by signal processing methods. An analysis specifically developed for the disaggregation of runoff time series into flow components is the Functional Streamflow Disaggregation (FSD; Carl & Behrendt, 2008). This method is used in the calibration of an implementation of the hydrological model SWIM in a medium sized watershed in Thailand. FSD is applied to disaggregate the discharge time series into three flow components which are interpreted as base flow, inter-flow and surface runoff. In addition to total runoff, the model is calibrated against these three components in a modified GLUE analysis, with the aim to identify structural model deficiencies, assess the internal process representation and to tackle equifinality. We developed a model dependent (MDA) approach calibrating the model runoff components against the FSD components, and a model independent (MIA) approach comparing the FSD of the model results and the FSD of calibration data. The results indicate, that the decomposition provides valuable information for the calibration. Particularly MDA highlights and discards a number of standard GLUE behavioural models underestimating the contribution of soil water to river discharge. Both, MDA and MIA yield to a reduction of the parameter ranges by a factor up to 3 in comparison to standard GLUE. Based on these results, we conclude that the developed calibration approach is able to reduce the equifinality of hydrological model parameterizations. The effect on the uncertainty of the model predictions is strongest by applying MDA and shows only minor reductions for MIA. Besides
2013-01-01
In this paper, we develop and validate a method to identify computationally efficient site- and patient-specific models of ultrasound thermal therapies from MR thermal images. The models of the specific absorption rate of the transduced energy and the temperature response of the therapy target are identified in the reduced basis of proper orthogonal decomposition of thermal images, acquired in response to a mild thermal test excitation. The method permits dynamic reidentification of the treatment models during the therapy by recursively utilizing newly acquired images. Such adaptation is particularly important during high-temperature therapies, which are known to substantially and rapidly change tissue properties and blood perfusion. The developed theory was validated for the case of focused ultrasound heating of a tissue phantom. The experimental and computational results indicate that the developed approach produces accurate low-dimensional treatment models despite temporal and spatial noises in MR images and slow image acquisition rate. PMID:22531754
Application of three dimensional geological models to hydrogeology
NASA Astrophysics Data System (ADS)
Dong, M.; Neukum, C.; Azzam, R.
2009-04-01
Recently, three dimensional (3D) numerical simulation of subsurface structure has become a common engineering geological tool to investigate a variety of geological settings. Besides, hydrogeology always tightly combines with geological structures. For these reasons, coupling 3D geological models with hydrogeology will not only improve understanding of subsurface conditions, but also provide a common stratigraphic framework for hydrogeological applications. The reliability of 3D geological models largely depends on the quality and quantity of data. Normally, before 3D geological models are constructed in the software package, the initial data (borehole descriptions, geological maps, geological cross sections, outcrop data, geo-electrical survey, digital elevation model, etc.) are acquired from archive as much as possible and standardized in a single table. To ensure the precision of models, new drilling data should be gathered from local authorities such as Geological Survey in time. Some experimental data are necessary to be kept at the initial moment to create a subset for verification of the models. In particular, the resulting models will be used for hydrogeological applications. So, more parameters should be collected to construct the 3D property models. Properties contain porosities of soil, bearing capacity, compressibility and particular geological phenomenon such as the regional aquifers, aquitard and faults. During the processing of model construction, the minimum element of the models is grid, which can be converted to some finite elements software. Further studies of these models to hydrogeological application involve: integrating faulted horizons of the 3D geological model into the groundwater modeling software package and simulating the groundwater flow within the main relevant aquifers using a finite elements approach; simulating distribution and calculating volume of groundwater in particular area; providing 3D parameters for vulnerability maps of
Luo, Xiaochen; Donnellan, M Brent; Burt, S Alexandra; Klump, Kelly L
2016-07-01
Eating disorders are conceptualized as categorical rather than dimensional in the current major diagnostic system (Diagnostic and Statistical Manual of Mental Disorders; 5th ed.; American Psychiatric Association, 2013) and in many previous studies. However, previous research has not critically evaluated this assumption or tested hybrid models (e.g., modeling latent variables with both dimensional and categorical features). Accordingly, the current study directly compared categorical, dimensional, and hybrid models for eating pathology in a large, population-based sample. Participants included 3,032 female and male twins (ages 9-30 years) from the Michigan State University Twin Registry. The Minnesota Eating Behaviors Survey was used to assess disordered eating symptoms including body dissatisfaction, weight preoccupation, binge eating, and compensatory behaviors. Results showed that dimensional models best fit the data in the overall sample as well as across subgroups divided by sex and pubertal status (e.g., prepubertal vs. postpubertal). It is interesting to note that the results favored more categorical models when using a case-control subset of our sample with participants who either endorsed substantial eating pathology or no/little eating pathology. Overall, findings provide support for a dimensional conceptualization of eating pathology and underscore the importance of using community samples to capture the full range of severity of eating pathology when investigating questions about taxonomy. (PsycINFO Database Record PMID:27214062
New Two-Dimensional Massless Field Theory from Bagger-Lambert Model
NASA Astrophysics Data System (ADS)
Santos, M. A.; Vancea, I. V.
By compactifying the Bagger-Lambert-Gustavsson model on ℝ1,1×S1, we obtain a new two-dimensional massless field theory with dynamical fields valued in the Lie three-algebra {A} coupled with an SO(1, 1) scalar and vector field which are valued in the set End( {A}) of the endomorphisms of the Lie three-algebra. In the limit gBLG→∞ the theory reduces to a supersymmetric Lie three-valued generalization of the Green-Schwarz superstring in the light-cone gauge.
Persistence in a Two-Dimensional Moving-Habitat Model.
Phillips, Austin; Kot, Mark
2015-11-01
Environmental changes are forcing many species to track suitable conditions or face extinction. In this study, we use a two-dimensional integrodifference equation to analyze whether a population can track a habitat that is moving due to climate change. We model habitat as a simple rectangle. Our model quickly leads to an eigenvalue problem that determines whether the population persists or declines. After surveying techniques to solve the eigenvalue problem, we highlight three findings that impact conservation efforts such as reserve design and species risk assessment. First, while other models focus on habitat length (parallel to the direction of habitat movement), we show that ignoring habitat width (perpendicular to habitat movement) can lead to overestimates of persistence. Dispersal barriers and hostile landscapes that constrain habitat width greatly decrease the population's ability to track its habitat. Second, for some long-distance dispersal kernels, increasing habitat length improves persistence without limit; for other kernels, increasing length is of limited help and has diminishing returns. Third, it is not always best to orient the long side of the habitat in the direction of climate change. Evidence suggests that the kurtosis of the dispersal kernel determines whether it is best to have a long, wide, or square habitat. In particular, populations with platykurtic dispersal benefit more from a wide habitat, while those with leptokurtic dispersal benefit more from a long habitat. We apply our model to the Rocky Mountain Apollo butterfly (Parnassius smintheus). PMID:26582361
Development of an interactive anatomical three-dimensional eye model.
Allen, Lauren K; Bhattacharyya, Siddhartha; Wilson, Timothy D
2015-01-01
The discrete anatomy of the eye's intricate oculomotor system is conceptually difficult for novice students to grasp. This is problematic given that this group of muscles represents one of the most common sites of clinical intervention in the treatment of ocular motility disorders and other eye disorders. This project was designed to develop a digital, interactive, three-dimensional (3D) model of the muscles and cranial nerves of the oculomotor system. Development of the 3D model utilized data from the Visible Human Project (VHP) dataset that was refined using multiple forms of 3D software. The model was then paired with a virtual user interface in order to create a novel 3D learning tool for the human oculomotor system. Development of the virtual eye model was done while attempting to adhere to the principles of cognitive load theory (CLT) and the reduction of extraneous load in particular. The detailed approach, digital tools employed, and the CLT guidelines are described herein. PMID:25228501
Correlation driven dimensional reduction in a two orbital Hubbard model
NASA Astrophysics Data System (ADS)
Mukherjee, Anamitra; Patel, Niravkumar D.; Moreo, Adrianna; Dagotto, Elbio
We apply a recently developed many-body technique that allows for the incorporation of thermal effects, to a two orbital Hubbard model of relevance for the pnictides. In this `Mean Field-Monte Carlo' (MF-MC) approach, we first perform a mean field (MF) decomposition of the Hubbard model and then treat the mean field parameters via the standard finite-temperature classical Monte Carlo (MC). We have earlier established that for the one orbital Hubbard model, this MF-MC approach provides remarkable improvement over simple finite-temperature mean field methods and is in good agreement with Determinantal Quantum Monte Carlo results. In this talk we will discuss our MC-MF results applied to the two orbital Hubbard model with degenerate dxz and dyz orbitals for the undoped pnictides. The onsite repulsion strength U vs. temperature phase diagram is rich and has a narrow window of nematicity above the N'eel temperature. Our main result is the discovery of a novel intermediate coupling regime characterized by an unexpected spontaneous dimensional reduction that renders one direction insulating and the other metallic.
Thermodynamics of trajectories of the one-dimensional Ising model
NASA Astrophysics Data System (ADS)
Loscar, Ernesto S.; Mey, Antonia S. J. S.; Garrahan, Juan P.
2011-12-01
We present a numerical study of the dynamics of the one-dimensional Ising model by applying the large-deviation method to describe ensembles of dynamical trajectories. In this approach trajectories are classified according to a dynamical order parameter and the structure of ensembles of trajectories can be understood from the properties of large-deviation functions, which play the role of dynamical free-energies. We consider both Glauber and Kawasaki dynamics, and also the presence of a magnetic field. For Glauber dynamics in the absence of a field we confirm the analytic predictions of Jack and Sollich about the existence of critical dynamical, or space-time, phase transitions at critical values of the 'counting' field s. In the presence of a magnetic field the dynamical phase diagram also displays first order transition surfaces. We discuss how these non-equilibrium transitions in the 1d Ising model relate to the equilibrium ones of the 2d Ising model. For Kawasaki dynamics we find a much simpler dynamical phase structure, with transitions reminiscent of those seen in kinetically constrained models.
Edery, Ariel; Graham, Noah; MacDonald, Ilana
2009-06-15
Under dimensional reduction, a system in D spacetime dimensions will not necessarily yield its D-1-dimensional analog version. Among other things, this result will depend on the boundary conditions and the dimension D of the system. We investigate this question for scalar and Abelian gauge fields under boundary conditions that obey the symmetries of the action. We apply our findings to the Casimir piston, an ideal system for detecting boundary effects. Our investigation is not limited to extra dimensions and we show that the original piston scenario proposed in 2004, a toy model involving a scalar field in 3D (2+1) dimensions, can be obtained via dimensional reduction from a more realistic 4D electromagnetic (EM) system. We show that for perfect conductor conditions, a D-dimensional EM field reduces to a D-1 scalar field and not its lower-dimensional version. For Dirichlet boundary conditions, no theory is recovered under dimensional reduction and the Casimir pressure goes to zero in any dimension. This ''zero Dirichlet'' result is useful for understanding the EM case. We then identify two special systems where the lower-dimensional version is recovered in any dimension: systems with perfect magnetic conductor (PMC) and Neumann boundary conditions. We show that these two boundary conditions can be obtained from a variational procedure in which the action vanishes outside the bounded region. The fields are free to vary on the surface and have zero modes, which survive after dimensional reduction.
A two-dimensional hydrodynamic model of a tidal estuary
Walters, Roy A.; Cheng, Ralph T.
1979-01-01
A finite element model is described which is used in the computation of tidal currents in an estuary. This numerical model is patterned after an existing algorithm and has been carefully tested in rectangular and curve-sided channels with constant and variable depth. One of the common uncertainties in this class of two-dimensional hydrodynamic models is the treatment of the lateral boundary conditions. Special attention is paid specifically to addressing this problem. To maintain continuity within the domain of interest, ‘smooth’ curve-sided elements must be used at all shoreline boundaries. The present model uses triangular, isoparametric elements with quadratic basis functions for the two velocity components and a linear basis function for water surface elevation. An implicit time integration is used and the model is unconditionally stable. The resultant governing equations are nonlinear owing to the advective and the bottom friction terms and are solved iteratively at each time step by the Newton-Raphson method. Model test runs have been made in the southern portion of San Francisco Bay, California (South Bay) as well as in the Bay west of Carquinez Strait. Owing to the complex bathymetry, the hydrodynamic characteristics of the Bay system are dictated by the generally shallow basins which contain deep, relict river channels. Great care must be exercised to ensure that the conservation equations remain locally as well as globally accurate. Simulations have been made over several representative tidal cycles using this finite element model, and the results compare favourably with existing data. In particular, the standing wave in South Bay and the progressive wave in the northern reach are well represented.
Ma Xiang; Zabaras, Nicholas
2010-05-20
A computational methodology is developed to address the solution of high-dimensional stochastic problems. It utilizes high-dimensional model representation (HDMR) technique in the stochastic space to represent the model output as a finite hierarchical correlated function expansion in terms of the stochastic inputs starting from lower-order to higher-order component functions. HDMR is efficient at capturing the high-dimensional input-output relationship such that the behavior for many physical systems can be modeled to good accuracy only by the first few lower-order terms. An adaptive version of HDMR is also developed to automatically detect the important dimensions and construct higher-order terms using only the important dimensions. The newly developed adaptive sparse grid collocation (ASGC) method is incorporated into HDMR to solve the resulting sub-problems. By integrating HDMR and ASGC, it is computationally possible to construct a low-dimensional stochastic reduced-order model of the high-dimensional stochastic problem and easily perform various statistic analysis on the output. Several numerical examples involving elementary mathematical functions and fluid mechanics problems are considered to illustrate the proposed method. The cases examined show that the method provides accurate results for stochastic dimensionality as high as 500 even with large-input variability. The efficiency of the proposed method is examined by comparing with Monte Carlo (MC) simulation.
Berger, R. L. Cohen, B. I.; Brunner, S.; Banks, J. W.; Winjum, B. J.
2015-05-15
Kinetic simulations of two-dimensional finite-amplitude electron plasma waves are performed in a one-wavelength long system. A systematic study of the most unstable linear sideband mode, in particular its growth rate γ and wavenumber k{sub y}, is carried out by scanning the amplitude and wavenumber of the initial wave. Simulation results are compared with numerical and analytical solutions to a two-dimensional nonlinear Schrödinger model [H. A. Rose and L. Yin, Phys. Plasmas 15, 042311 (2008)] and to the reduced model by Kruer et al. [Phys. Rev. Lett. 23, 838 (1969)] generalized to two dimensions.
Jing, Zhang; Sheng, Kang Bao
2016-01-01
To assist physicians to quickly find the required 3D model from the mass medical model, we propose a novel retrieval method, called DRFVT, which combines the characteristics of dimensionality reduction (DR) and feature vector transformation (FVT) method. The DR method reduces the dimensionality of feature vector; only the top M low frequency Discrete Fourier Transform coefficients are retained. The FVT method does the transformation of the original feature vector and generates a new feature vector to solve the problem of noise sensitivity. The experiment results demonstrate that the DRFVT method achieves more effective and efficient retrieval results than other proposed methods. PMID:27293478
Three dimensional CAD model of the Ignitor machine
NASA Astrophysics Data System (ADS)
Orlandi, S.; Zanaboni, P.; Macco, A.; Sioli, V.; Risso, E.
1998-11-01
defind The final, global product of all the structural and thermomechanical design activities is a complete three dimensional CAD (AutoCAD and Intergraph Design Review) model of the IGNITOR machine. With this powerful tool, any interface, modification, or upgrading of the machine design is managed as an integrated part of the general effort aimed at the construction of the Ignitor facility. ind The activities that are underway, to complete the design of the core of the experiment and that will be described, concern the following: ind - the cryogenic cooling system, ind - the radial press, the center post, the mechanical supports (legs) of the entire machine, ind - the inner mechanical supports of major components such as the plasma chamber and the outer poloidal field coils.
Anyon Hubbard Model in One-Dimensional Optical Lattices.
Greschner, Sebastian; Santos, Luis
2015-07-31
Raman-assisted hopping may be used to realize the anyon Hubbard model in one-dimensional optical lattices. We propose a feasible scenario that significantly improves the proposal of T. Keilmann et al. [Nat. Commun. 2, 361 (2011)], allowing as well for an exact realization of the two-body hard-core constraint, and for controllable effective interactions without the need of Feshbach resonances. We show that the combination of anyonic statistics and two-body hard-core constraint leads to a rich ground-state physics, including Mott insulators with attractive interactions, pair superfluids, dimer phases, and multicritical points. Moreover, the anyonic statistics results in a novel two-component superfluid of holon and doublon dimers, characterized by a large but finite compressibility and a multipeaked momentum distribution, which may be easily revealed experimentally. PMID:26274417
Computational Model of Three Dimensional Elastic Wing Driven by Muscles
NASA Astrophysics Data System (ADS)
Wang, Z. Jane; Cowen, Nathaniel; Peskin, Charles S.; Childress, Stephen W.
2003-11-01
The flapping wing motion observed in nature results from couplings of muscles, flexible wing structures, and unsteady flows. Previously we have studied the unsteady flows and forces of a rigid two dimensional wing undergoing prescribed motion similar to kinematics observed in insects, as a means of understanding basic unsteady aerodynamic mechanisms. In this talk, we describe our recent progress in constructing a more realistic model insect, which consists of a pair of elastic wings immersed in fluids, and is driven by periodically contracting 'muscles'. A natural computational framework for such a system is the immersed boundary method, which is used here. We present simulations of flapping flight at Reynolds number 10^2, in the same range as that of fruitflies and butterflies.
Two-dimensional computational model for electrostrictive graft elastomer
NASA Astrophysics Data System (ADS)
Wang, Youqi; Sun, Xuekun; Sun, Changjie; Su, Ji
2003-07-01
The electrostrictive graft elastomer is a new type of electromechanically active polymer. Recently developed by NASA, it consists of flexible backbone chains, each with side chains, called grafts. Grafts from neighboring backbones physically cross-link and form crystal units. The flexible backbone chains and the crystal graft units are composed of polarized monomers, which contain atoms with electric partial charges, generating dipole moments. Polarized domains are created by dipole moments in the crystal units. When the elastomer is placed into an electric field, external rotating moments are applied to polarized domains. It stimulates the rotation of the polarized crystal graft units, which further induces deformation of the elastomer. In this paper, two-dimensional computational models are established to analyze the deformation mechanism of the graft elastomer.
Mode Estimation for High Dimensional Discrete Tree Graphical Models
Chen, Chao; Liu, Han; Metaxas, Dimitris N.; Zhao, Tianqi
2014-01-01
This paper studies the following problem: given samples from a high dimensional discrete distribution, we want to estimate the leading (δ, ρ)-modes of the underlying distributions. A point is defined to be a (δ, ρ)-mode if it is a local optimum of the density within a δ-neighborhood under metric ρ. As we increase the “scale” parameter δ, the neighborhood size increases and the total number of modes monotonically decreases. The sequence of the (δ, ρ)-modes reveal intrinsic topographical information of the underlying distributions. Though the mode finding problem is generally intractable in high dimensions, this paper unveils that, if the distribution can be approximated well by a tree graphical model, mode characterization is significantly easier. An efficient algorithm with provable theoretical guarantees is proposed and is applied to applications like data analysis and multiple predictions. PMID:25620859
Lifshitz transition in two-dimensional spin density wave models.
Lin, J.; Materials Science Division
2010-11-09
We argue that both pocket-disappearing and neck-disrupting types of Lifshitz transitions can be realized in two-dimensional spin-density wave models for underdoped cuprates, and study both types of transitions with impurity scattering treated in the self-consistent Born approximation. We first solve for the electron self-energy from the self-consistent equation, and then study the low-temperature electrical conductivity and thermopower. Close to the Lifshitz transition, the thermopower is strongly enhanced. For the pocket-disappearing type, it has a sharp peak while for the neck-disrupting type, it changes sign at the transition, with its absolute value peaked on both sides of the transition. We discuss possible applications to underdoped cuprates.
Dimensional Reduction of Gauge Theories, Spontaneous Compactification and Model Building
NASA Astrophysics Data System (ADS)
Kubyshin, Yura A.; Mourao, Jose M.; Rudolph, Gerd; Volobujev, Igor P.
This monograph presents in detail the reduction method for studying the unification of fundamental actions. The mathematical (differential geometrical) methods make extensive use of Lie Groups and the concept of homogeneous spaces. The main topic of the book is the dimensional reduction of pure Yang-Mills theories. A rather complete analysis of the structure of the scalar field potential is given and a general procedure for solving the equations of spontaneous compactification within Einstein-Yang-Mills systems is presented. The authors also discuss gravity and theories with fermions included and they review attempts to construct realistic models. The book presents the basic ideas and the calculations in detail and should be of interest to researchers and graduate students in mathematical physics.
One-dimensional disk model simulation for klystron design
Yonezawa, H.; Okazaki, Y.
1984-05-01
In 1982, one of the authors (Okazaki), of Toshiba Corporation, wrote a one-dimensional, rigid-disk model computer program <1> to serve as a reliable design tool for the 150 MW klystron development project. This is an introductory note for the users of this program. While reviewing the so-called disk programs presently available, hypotheses such as gridded interaction gaps, a linear relation between phase and position, and so on, were found. These hypotheses bring serious limitations and uncertainties into the computational results. JPNDISK was developed to eliminate these defects, to follow the equations of motion as rigorously as possible, and to obtain self-consistent solutions for the gap voltages and the electron motion. Although some inaccuracy may be present in the relativistic region, JPNDISK, in its present form, seems a most suitable tool for klystron design; it is both easy and inexpensive to use.
NASA Astrophysics Data System (ADS)
Napier, W. J.; Ensberg, J. J.; Seinfeld, J. H.
2014-10-01
The new generation of secondary organic aerosol (SOA) models that represent gas- and particle-phase chemistry and thermodynamic partitioning using discrete two-dimensional grids (e.g. SOM, 2D-VBS) cannot be efficiently implemented into three-dimensional atmospheric chemical transport models (CTMs) due to the large number of bins (tracers) required. In this study, we introduce a novel mathematical framework, termed the Oxidation State/Volatility Moment Method, that is designed to address these computational burdens so as to allow the new generation of SOA models to be implemented into CTMs. This is accomplished by mapping the two-dimensional grids onto probability distributions that conserve carbon and oxygen mass. Assessment of the Moment Method strengths (speed, carbon and oxygen conservation) and weaknesses (numerical drift) provide valuable insight that can guide future development of SOA modules for atmospheric CTMs.
Current status of one- and two-dimensional numerical models: Successes and limitations
NASA Technical Reports Server (NTRS)
Schwartz, R. J.; Gray, J. L.; Lundstrom, M. S.
1985-01-01
The capabilities of one and two-dimensional numerical solar cell modeling programs (SCAP1D and SCAP2D) are described. The occasions when a two-dimensional model is required are discussed. The application of the models to design, analysis, and prediction are presented along with a discussion of problem areas for solar cell modeling.
Predictive modeling and reducing cyclic variability in autoignition engines
Hellstrom, Erik; Stefanopoulou, Anna; Jiang, Li; Larimore, Jacob
2016-08-30
Methods and systems are provided for controlling a vehicle engine to reduce cycle-to-cycle combustion variation. A predictive model is applied to predict cycle-to-cycle combustion behavior of an engine based on observed engine performance variables. Conditions are identified, based on the predicted cycle-to-cycle combustion behavior, that indicate high cycle-to-cycle combustion variation. Corrective measures are then applied to prevent the predicted high cycle-to-cycle combustion variation.
Systematic development of reduced reaction mechanisms for dynamic modeling
NASA Technical Reports Server (NTRS)
Frenklach, M.; Kailasanath, K.; Oran, E. S.
1986-01-01
A method for systematically developing a reduced chemical reaction mechanism for dynamic modeling of chemically reactive flows is presented. The method is based on the postulate that if a reduced reaction mechanism faithfully describes the time evolution of both thermal and chain reaction processes characteristic of a more complete mechanism, then the reduced mechanism will describe the chemical processes in a chemically reacting flow with approximately the same degree of accuracy. Here this postulate is tested by producing a series of mechanisms of reduced accuracy, which are derived from a full detailed mechanism for methane-oxygen combustion. These mechanisms were then tested in a series of reactive flow calculations in which a large-amplitude sinusoidal perturbation is applied to a system that is initially quiescent and whose temperature is high enough to start ignition processes. Comparison of the results for systems with and without convective flow show that this approach produces reduced mechanisms that are useful for calculations of explosions and detonations. Extensions and applicability to flames are discussed.
Three-dimensional osteochondral microtissue to model pathogenesis of osteoarthritis.
Lozito, Thomas P; Alexander, Peter G; Lin, Hang; Gottardi, Riccardo; Cheng, Anthony Wai-Ming; Tuan, Rocky S
2013-01-01
Osteoarthritis (OA), the most prevalent form of arthritis, affects up to 15% of the adult population and is principally characterized by degeneration of the articular cartilage component of the joint, often with accompanying subchondral bone lesions. Understanding the mechanisms underlying the pathogenesis of OA is important for the rational development of disease-modifying OA drugs. While most studies on OA have focused on the investigation of either the cartilage or the bone component of the articular joint, the osteochondral complex represents a more physiologically relevant target because the disease ultimately is a disorder of osteochondral integrity and function. In our current investigation, we are constructing an in vitro three-dimensional microsystem that models the structure and biology of the osteochondral complex of the articular joint. Osteogenic and chondrogenic tissue components are produced using adult human mesenchymal stem cells derived from bone marrow and adipose seeded within biomaterial scaffolds photostereolithographically fabricated with defined internal architecture. A three-dimensional-printed, perfusion-ready container platform with dimensions to fit into a 96-well culture plate format is designed to house and maintain the osteochondral microsystem that has the following features: an anatomic cartilage/bone biphasic structure with a functional interface; all tissue components derived from a single adult mesenchymal stem cell source to eliminate possible age/tissue-type incompatibility; individual compartments to constitute separate microenvironment for the synovial and osseous components; accessible individual compartments that may be controlled and regulated via the introduction of bioactive agents or candidate effector cells, and tissue/medium sampling and compositional assays; and compatibility with the application of mechanical load and perturbation. The consequences of mechanical injury, exposure to inflammatory cytokines, and
Reducing uncertainty in risk modeling for methylmercury exposure
Ponce, R.; Egeland, G.; Middaugh, J.; Lee, R.
1995-12-31
The biomagnification and bioaccumulation of methylmercury in marine species represents a challenge for risk assessment related to the consumption of subsistence foods in Alaska. Because of the profound impact that food consumption advisories have on indigenous peoples seeking to preserve a way of life, there is a need to reduce uncertainty in risk assessment. Thus, research was initiated to reduce the uncertainty in assessing the health risks associated with the consumption of subsistence foods. Because marine subsistence foods typically contain elevated levels of methylmercury, preliminary research efforts have focused on methylmercury as the principal chemical of concern. Of particular interest are the antagonistic effects of selenium on methylmercury toxicity. Because of this antagonism, methylmercury exposure through the consumption of marine mammal meat (with high selenium) may not be as toxic as comparable exposures through other sources of dietary intake, such as in the contaminated bread episode of Iraq (containing relatively low selenium). This hypothesis is supported by animal experiments showing reduced toxicity of methylmercury associated with marine mammal meat, by the antagonistic influence of selenium on methylmercury toxicity, and by negative clinical findings in adult populations exposed to methylmercury through a marine diet not subject to industrial contamination. Exploratory model development is underway to identify potential improvements and applications of current deterministic and probabilistic models, particularly by incorporating selenium as an antagonist in risk modeling methods.
Underwater drag-reducing effect of superhydrophobic submarine model.
Zhang, Songsong; Ouyang, Xiao; Li, Jie; Gao, Shan; Han, Shihui; Liu, Lianhe; Wei, Hao
2015-01-01
To address the debates on whether superhydrophobic coatings can reduce fluid drag for underwater motions, we have achieved an underwater drag-reducing effect of large superhydrophobic submarine models with a feature size of 3.5 cm × 3.7 cm × 33.0 cm through sailing experiments of submarine models, modified with and without superhydrophobic surface under similar power supply and experimental conditions. The drag reduction rate reached as high as 15%. The fabrication of superhydrophobic coatings on a large area of submarine model surfaces was realized by immobilizing hydrophobic copper particles onto a precross-linked polydimethylsiloxane (PDMS) surface. The pre-cross-linking time was optimized at 20 min to obtain good superhydrophobicity for the underwater drag reduction effect by investigating the effect of pre-cross-linking on surface wettability and water adhesive property. We do believe that superhydrophobic coatings may provide a promising application in the field of drag-reducing of vehicle motions on or under the water surface. PMID:25496725
Mechanistically Consistent Reduced Models of Synthetic Gene Networks
Mier-y-Terán-Romero, Luis; Silber, Mary; Hatzimanikatis, Vassily
2013-01-01
Designing genetic networks with desired functionalities requires an accurate mathematical framework that accounts for the essential mechanistic details of the system. Here, we formulate a time-delay model of protein translation and mRNA degradation by systematically reducing a detailed mechanistic model that explicitly accounts for the ribosomal dynamics and the cleaving of mRNA by endonucleases. We exploit various technical and conceptual advantages that our time-delay model offers over the mechanistic model to probe the behavior of a self-repressing gene over wide regions of parameter space. We show that a heuristic time-delay model of protein synthesis of a commonly used form yields a notably different prediction for the parameter region where sustained oscillations occur. This suggests that such heuristics can lead to erroneous results. The functional forms that arise from our systematic reduction can be used for every system that involves transcription and translation and they could replace the commonly used heuristic time-delay models for these processes. The results from our analysis have important implications for the design of synthetic gene networks and stress that such design must be guided by a combination of heuristic models and mechanistic models that include all relevant details of the process. PMID:23663853
Three dimensional numerical modeling of land subsidence in Shanghai
NASA Astrophysics Data System (ADS)
Ye, S.; Luo, Y.; Wu, J.; Teatini, P.; Wang, H.; Jiao, X.
2015-11-01
Shanghai city has been suffering land subsidence caused by overly exploitation of ground water since 1921, which is a serious problem for this coastal city with altitude of 2.2-4.8 m above mean sea level. The largest cumulative land subsidence amounted to 2.6 m in the downtown area. Measures to decrease the ground water exploitation, change the pumping aquifers, and increase aquifer artificial recharge have been used to mitigate land subsidence since 1961. It is necessary to develop a proper numerical model to simulate and predict land subsidence. In this study, a decoupled three-dimensional (3-D) finite element land subsidence model including a 3-D ground water flow model and a 3-D geo-mechanical model was developed to simulate the 3-D deformation of the aquifer systems in the center area of Shanghai. The area of downtown Shanghai is 660 km2, with 10 million inhabitants, dense high buildings, and 11 metro lines. The simulation spans the period from 1979 to 1995. Two different assumptions have been tested on the side boundary, i.e., precluding the three components of the displacement, or assuming a free-displacement condition. The distribution of calculated land subsidence and horizontal displacements in different aquifers was analyzed. The computed vertical displacement fitted well with the available observations. It has been verified that the two different assumptions on the lateral boundaries in the geo-mechanical model caused different results just limited on nodes close to boundary. The developed 3-D land subsidence model is reasonable and can be used to simulate and predict 3-D movement of aquifer systems in the center area of Shanghai, which could provide scientific support to local government in controlling land subsidence and differential movements of the land surface.
Moiré reducing two-dimensional diffractive optical low-pass filter made from molded plastic
NASA Astrophysics Data System (ADS)
Sakohira, Yosuke; Yamamoto, Kazuya; Okada, Makoto
2016-03-01
A two dimensional sinusoid diffraction grating is developed for a moiré-reducing low-pass filter. Typical display units have image pixels arranged systematically in two dimensions, with non-illuminating regions between the image pixels. Using a conventional lens to view this display, the image pixels and the region between the pixels are both magnified, and the resulting image is unpleasant to the human eye, especially with color displays, called the screen door effect. This pixel problem is typically solved with a low-pass filter using a diffraction grating. However, depending on the period of the diffraction grating compared to the period of the image pixels, moiré can be seen. In recent years, organic electroluminescence displays with a small fill factor are growing popular, but such displays are usually more prone to the screen door effect and moiré. With conventional optical low-pass filters, only the pixel pitch in the vertical and horizontal directions are taken into account, but this is insufficient with small fill-factor pixels, and consideration for various diagonal periods is needed. A two dimensional sinusoid structure diffraction grating is developed for a moiré-reducing low-pass filter. The angle of the grating with the image pixel arrangement, the distance between the display and the grating, the grating depth, and the grating period are all chosen appropriately, and take into account multiple non-adjacent diagonal image pixel periods for all colors, consequently reducing moiré and the screen door effect. We present the calculations and evaluation results from plastic samples made by lithography tooled molds.
Reduced Complexity Modeling (RCM): toward more use of less
NASA Astrophysics Data System (ADS)
Paola, Chris; Voller, Vaughan
2014-05-01
Although not exact, there is a general correspondence between reductionism and detailed, high-fidelity models, while 'synthesism' is often associated with reduced-complexity modeling. There is no question that high-fidelity reduction- based computational models are extremely useful in simulating the behaviour of complex natural systems. In skilled hands they are also a source of insight and understanding. We focus here on the case for the other side (reduced-complexity models), not because we think they are 'better' but because their value is more subtle, and their natural constituency less clear. What kinds of problems and systems lend themselves to the reduced-complexity approach? RCM is predicated on the idea that the mechanism of the system or phenomenon in question is, for whatever reason, insensitive to the full details of the underlying physics. There are multiple ways in which this can happen. B.T. Werner argued for the importance of process hierarchies in which processes at larger scales depend on only a small subset of everything going on at smaller scales. Clear scale breaks would seem like a way to test systems for this property but to our knowledge has not been used in this way. We argue that scale-independent physics, as for example exhibited by natural fractals, is another. We also note that the same basic criterion - independence of the process in question from details of the underlying physics - underpins 'unreasonably effective' laboratory experiments. There is thus a link between suitability for experimentation at reduced scale and suitability for RCM. Examples from RCM approaches to erosional landscapes, braided rivers, and deltas illustrate these ideas, and suggest that they are insufficient. There is something of a 'wild west' nature to RCM that puts some researchers off by suggesting a departure from traditional methods that have served science well for centuries. We offer two thoughts: first, that in the end the measure of a model is its
NASA Technical Reports Server (NTRS)
Lee, S. S.; Sengupta, S.; Nwadike, E. V.
1982-01-01
The six-volume report: describes the theory of a three dimensional (3-D) mathematical thermal discharge model and a related one dimensional (1-D) model, includes model verification at two sites, and provides a separate user's manual for each model. The 3-D model has two forms: free surface and rigid lid. The former, verified at Anclote Anchorate (FL), allows a free air/water interface and is suited for significant surface wave heights compared to mean water depth; e.g., estuaries and coastal regions. The latter, verified at Lake Keowee (SC), is suited for small surface wave heights compared to depth (e.g., natural or man-made inland lakes) because surface elevation has been removed as a parameter. These models allow computation of time dependent velocity and temperature fields for given initial conditions and time-varying boundary conditions.
One-dimensional cold cap model for melters with bubblers
Pokorny, Richard; Hilliard, Zachary J.; Dixon, Derek R.; Schweiger, Michael J.; Guillen, Donna P.; Kruger, Albert A.; Hrma, Pavel
2015-07-28
The rate of glass production during vitrification in an all-electrical melter greatly impacts the cost and schedule of nuclear waste treatment and immobilization. The feed is charged to the melter on the top of the molten glass, where it forms a layer of reacting and melting material, called the cold cap. During the final stages of the batch-to-glass conversion process, gases evolved from reactions produce primary foam, the growth and collapse of which controls the glass production rate. The mathematical model of the cold cap was revised to include functional representation of primary foam behavior and to account for themore » dry cold cap surface. The melting rate is computed as a response to the dependence of the primary foam collapse temperature on the heating rate and melter operating conditions, including the effect of bubbling on the cold cap bottom and top surface temperatures. The simulation results are in good agreement with experimental data from laboratory-scale and pilot-scale melter studies. Lastly, the cold cap model will become part of the full three-dimensional mathematical model of the waste glass melter.« less
Two-dimensional CFD modeling of wave rotor flow dynamics
NASA Technical Reports Server (NTRS)
Welch, Gerard E.; Chima, Rodrick V.
1994-01-01
A two-dimensional Navier-Stokes solver developed for detailed study of wave rotor flow dynamics is described. The CFD model is helping characterize important loss mechanisms within the wave rotor. The wave rotor stationary ports and the moving rotor passages are resolved on multiple computational grid blocks. The finite-volume form of the thin-layer Navier-Stokes equations with laminar viscosity are integrated in time using a four-stage Runge-Kutta scheme. Roe's approximate Riemann solution scheme or the computationally less expensive advection upstream splitting method (AUSM) flux-splitting scheme is used to effect upwind-differencing of the inviscid flux terms, using cell interface primitive variables set by MUSCL-type interpolation. The diffusion terms are central-differenced. The solver is validated using a steady shock/laminar boundary layer interaction problem and an unsteady, inviscid wave rotor passage gradual opening problem. A model inlet port/passage charging problem is simulated and key features of the unsteady wave rotor flow field are identified. Lastly, the medium pressure inlet port and high pressure outlet port portion of the NASA Lewis Research Center experimental divider cycle is simulated and computed results are compared with experimental measurements. The model accurately predicts the wave timing within the rotor passages and the distribution of flow variables in the stationary inlet port region.
Three-dimensional bonded-cell model for grain fragmentation
NASA Astrophysics Data System (ADS)
Cantor, D.; Azéma, E.; Sornay, P.; Radjai, F.
2016-07-01
We present a three-dimensional numerical method for the simulation of particle crushing in 3D. This model is capable of producing irregular angular fragments upon particle fragmentation while conserving the total volume. The particle is modeled as a cluster of rigid polyhedral cells generated by a Voronoi tessellation. The cells are bonded along their faces by a cohesive Tresca law with independent tensile and shear strengths and simulated by the contact dynamics method. Using this model, we analyze the mechanical response of a single particle subjected to diametral compression for varying number of cells, their degree of disorder, and intercell tensile and shear strength. In particular, we identify the functional dependence of particle strength on the intercell strengths. We find that two different regimes can be distinguished depending on whether intercell shear strength is below or above its tensile strength. In both regimes, we observe a power-law dependence of particle strength on both intercell strengths but with different exponents. The strong effect of intercell shear strength on the particle strength reflects an interlocking effect between cells. In fact, even at low tensile strength, the particle global strength can still considerably increase with intercell shear strength. We finally show that the Weibull statistics describes well the particle strength variability.
Spatially clustered zealots in a two-dimensional voter model
NASA Astrophysics Data System (ADS)
Stone, Thomas; Ludden, Matthew; McKay, Susan
The voter model, solvable in all dimensions in its standard form, has been extensively used to study behavior dynamics by using the tools of statistical mechanics. Recently, much work has been focused on determining the effects of zealots in the voter model, where a zealot is an agent that maintains its opinion (akin to an Ising spin variable) no matter the local environment. Here we investigate the effects of spatially clustered zealots in the standard voter model on a two-dimensional square lattice. The clustering of zealots is quantified by the conditional probability that a zealot of the +1 state appears on an adjacent site to a randomly chosen zealot. (All zealots are of the +1 state.) We determine the functional forms of the system consensus time with respect to system size, clustering, and zealot density, and compare these findings to previous results that do not include clustering. We also discuss an interesting random walk problem that arises when one attempts to calculate how clustering affects the consensus time for fixed zealot density and system size.
Three-dimensional transient electromagnetic modeling in the Laplace Domain
Mizunaga, H.; Lee, Ki Ha; Kim, H.J.
1998-09-01
In modeling electromagnetic responses, Maxwell's equations in the frequency domain are popular and have been widely used (Nabighian, 1994; Newman and Alumbaugh, 1995; Smith, 1996, to list a few). Recently, electromagnetic modeling in the time domain using the finite difference (FDTD) method (Wang and Hohmann, 1993) has also been used to study transient electromagnetic interactions in the conductive medium. This paper presents a new technique to compute the electromagnetic response of three-dimensional (3-D) structures. The proposed new method is based on transforming Maxwell's equations to the Laplace domain. For each discrete Laplace variable, Maxwell's equations are discretized in 3-D using the staggered grid and the finite difference method (FDM). The resulting system of equations is then solved for the fields using the incomplete Cholesky conjugate gradient (ICCG) method. The new method is particularly effective in saving computer memory since all the operations are carried out in real numbers. For the same reason, the computing speed is faster than frequency domain modeling. The proposed approach can be an extremely useful tool in developing an inversion algorithm using the time domain data.
One-dimensional cold cap model for melters with bubblers
Pokorny, Richard; Hilliard, Zachary J.; Dixon, Derek R.; Schweiger, Michael J.; Guillen, Donna P.; Kruger, Albert A.; Hrma, Pavel
2015-07-28
The rate of glass production during vitrification in an all-electrical melter greatly impacts the cost and schedule of nuclear waste treatment and immobilization. The feed is charged to the melter on the top of the molten glass, where it forms a layer of reacting and melting material, called the cold cap. During the final stages of the batch-to-glass conversion process, gases evolved from reactions produce primary foam, the growth and collapse of which controls the glass production rate. The mathematical model of the cold cap was revised to include functional representation of primary foam behavior and to account for the dry cold cap surface. The melting rate is computed as a response to the dependence of the primary foam collapse temperature on the heating rate and melter operating conditions, including the effect of bubbling on the cold cap bottom and top surface temperatures. The simulation results are in good agreement with experimental data from laboratory-scale and pilot-scale melter studies. Lastly, the cold cap model will become part of the full three-dimensional mathematical model of the waste glass melter.
Energy Models of One-Dimensional Multi-Propagative Systems
NASA Astrophysics Data System (ADS)
Ichchou, M. N.; Le Bot, A.; Jezequel, L.
1997-04-01
For a number of years, a model well suited to medium and high frequencies in structures, and called Energy Flow analysis, has been studied in order to generalize Statistical Energy Analysis. This model is based on a thermal analogy: a law analogous to Fourier's law for heat flow is involved. This relationship, which relates the energy flow to the energy density, leads to a differential equation similar to the heat conduction equation in steady state conditions. The aim of this study is to generalize previous works on one-dimensional structures. A wave approach is adopted, It is shown that Fourier's law is valid for one symmetric propagation mode (one group velocity). However this law has to be modified for non-symmetric propagation modes or multi-mode propagation. In each case, the wave approach determines the relationship between energy density and energy flow. Finally, the theoretical models are illustrated with several examples of waveguides: an Euler-Bernoulli beam on an elastic support, pipes carrying moving fluid and a Timoshenko beam.
Theme section: Multi-dimensional modelling, analysis and visualization
NASA Astrophysics Data System (ADS)
Guilbert, Éric; Çöltekin, Arzu; Castro, Francesc Antón; Pettit, Chris
2016-07-01
Spatial data are now collected and processed in larger amounts, and used by larger populations than ever before. While most geospatial data have traditionally been recorded as two-dimensional data, the evolution of data collection methods and user demands have led to data beyond the two dimensions describing complex multidimensional phenomena. An example of the relevance of multidimensional modelling is seen with the development of urban modelling where several dimensions have been added to the traditional 2D map representation (Sester et al., 2011). These include obviously the third spatial dimension (Biljecki et al., 2015) as well as the temporal, but also the scale dimension (Van Oosterom and Stoter, 2010) or, as mentioned by (Lu et al., 2016), multi-spectral and multi-sensor data. Such a view provides an organisation of multidimensional data around these different axes and it is time to explore each axis as the availability of unprecedented amounts of new data demands new solutions. The availability of such large amounts of data induces an acute need for developing new approaches to assist with their dissemination, visualisation, and analysis by end users. Several issues need to be considered in order to provide a meaningful representation and assist in data visualisation and mining, modelling and analysis; such as data structures allowing representation at different scales or in different contexts of thematic information.
Two-dimensional CFD modeling of wave rotor flow dynamics
NASA Technical Reports Server (NTRS)
Welch, Gerard E.; Chima, Rodrick V.
1993-01-01
A two-dimensional Navier-Stokes solver developed for detailed study of wave rotor flow dynamics is described. The CFD model is helping characterize important loss mechanisms within the wave rotor. The wave rotor stationary ports and the moving rotor passages are resolved on multiple computational grid blocks. The finite-volume form of the thin-layer Navier-Stokes equations with laminar viscosity are integrated in time using a four-stage Runge-Kutta scheme. The Roe approximate Riemann solution scheme or the computationally less expensive Advection Upstream Splitting Method (AUSM) flux-splitting scheme are used to effect upwind-differencing of the inviscid flux terms, using cell interface primitive variables set by MUSCL-type interpolation. The diffusion terms are central-differenced. The solver is validated using a steady shock/laminar boundary layer interaction problem and an unsteady, inviscid wave rotor passage gradual opening problem. A model inlet port/passage charging problem is simulated and key features of the unsteady wave rotor flow field are identified. Lastly, the medium pressure inlet port and high pressure outlet port portion of the NASA Lewis Research Center experimental divider cycle is simulated and computed results are compared with experimental measurements. The model accurately predicts the wave timing within the rotor passage and the distribution of flow variables in the stationary inlet port region.
Semiclassical limit of 4-dimensional spin foam models
Conrady, Florian; Freidel, Laurent
2008-11-15
We study the semiclassical properties of the Riemannian spin foam models with Immirzi parameter that are constructed via coherent states. We show that, in the semiclassical limit, the quantum spin foam amplitudes of an arbitrary triangulation are exponentially suppressed if the face spins do not correspond to a discrete geometry. When they do arise from a geometry, the amplitudes reduce to the exponential of i times the Regge action. Remarkably, the dependence on the Immirzi parameter disappears in this limit.
Oprenyeszk, Frederic; Sanchez, Christelle; Dubuc, Jean-Emile; Maquet, Véronique; Henrist, Catherine; Compère, Philippe; Henrotin, Yves
2015-01-01
This in vitro study investigated the metabolism of human osteoarthritic (OA) chondrocytes encapsulated in a spherical matrix enriched of chitosan. Human OA chondrocytes were encapsulated and cultured for 28 days either in chitosan-alginate beads or in alginate beads. The beads were formed by slowly passing dropwise either the chitosan 0.6%–alginate 1.2% or the alginate 1.2% solution through a syringe into a 102 mM CaCl2 solution. Beads were analyzed histologically after 28 days. Interleukin (IL)-6 and -8, prostaglandin (PG) E2, matrix metalloproteinases (MMPs), hyaluronan and aggrecan were quantified directly in the culture supernatant by specific ELISA and nitric oxide (NO) by using a colorimetric method based on the Griess reaction. Hematoxylin and eosin staining showed that chitosan was homogeneously distributed through the matrix and was in direct contact with chondrocytes. The production of IL-6, IL-8 and MMP-3 by chondrocytes significantly decreased in chitosan-alginate beads compared to alginate beads. PGE2 and NO decreased also significantly but only during the first three days of culture. Hyaluronan and aggrecan production tended to increase in chitosan-alginate beads after 28 days of culture. Chitosan-alginate beads reduced the production of inflammatory and catabolic mediators by OA chondrocytes and tended to stimulate the synthesis of cartilage matrix components. These particular effects indicate that chitosan-alginate beads are an interesting scaffold for chondrocytes encapsulation before transplantation to repair cartilage defects. PMID:26020773
NASA Astrophysics Data System (ADS)
Miyasato, Yoshihiko
The problem of constructing model reference adaptive H∞ control for a class of mixed parameter systems is considered in this manuscript. Mixed parameter systems are complex processes composed of distributed parameter systems (infinite dimensional systems) and lumped parameter systems (finite dimensional systems). Owing to infinite dimensional modes of distributed parameter systems, control of those complex systems via finite dimensional compensators, is a difficult but important problem from both theoretical and practical viewpoints. A stabilizing control signal is added to regulate the effect of infinite dimensional modes, and it is derived as a solution of certain H∞ control problem where the effect of infinite dimensional modes are considered as external disturbances to the process.
Multi-dimensional modelling of gas turbine combustion using a flame sheet model in KIVA II
NASA Technical Reports Server (NTRS)
Cheng, W. K.; Lai, M.-C.; Chue, T.-H.
1991-01-01
A flame sheet model for heat release is incorporated into a multi-dimensional fluid mechanical simulation for gas turbine application. The model assumes that the chemical reaction takes place in thin sheets compared to the length scale of mixing, which is valid for the primary combustion zone in a gas turbine combustor. In this paper, the details of the model are described and computational results are discussed.
An ice sheet model of reduced complexity for paleoclimate studies
NASA Astrophysics Data System (ADS)
Neff, B.; Born, A.; Stocker, T. F.
2015-08-01
IceBern2D is a vertically integrated ice sheet model to investigate the ice distribution on long timescales under different climatic conditions. It is forced by simulated fields of surface temperature and precipitation of the last glacial maximum and present day climate from a comprehensive climate model. This constant forcing is adjusted to changes in ice elevation. Bedrock sinking and sea level are a function of ice volume. Due to its reduced complexity and computational efficiency, the model is well-suited for extensive sensitivity studies and ensemble simulations on extensive temporal and spatial scales. It shows good quantitative agreement with standardized benchmarks on an artificial domain (EISMINT). Present day and last glacial maximum ice distributions on the Northern Hemisphere are also simulated with good agreement. Glacial ice volume in Eurasia is underestimated due to the lack of ice shelves in our model. The efficiency of the model is utilized by running an ensemble of 400 simulations with perturbed model parameters and two different estimates of the climate at the last glacial maximum. The sensitivity to the imposed climate boundary conditions and the positive degree day factor β, i.e., the surface mass balance, outweighs the influence of parameters that disturb the flow of ice. This justifies the use of simplified dynamics as a means to achieve computational efficiency for simulations that cover several glacial cycles. The sensitivity of the model to changes in surface temperature is illustrated as a hysteresis based on 5 million year long simulations.
Modeling change from large-scale high-dimensional spatio-temporal array data
NASA Astrophysics Data System (ADS)
Lu, Meng; Pebesma, Edzer
2014-05-01
The massive data that come from Earth observation satellite and other sensors provide significant information for modeling global change. At the same time, the high dimensionality of the data has brought challenges in data acquisition, management, effective querying and processing. In addition, the output of earth system modeling tends to be data intensive and needs methodologies for storing, validation, analyzing and visualization, e.g. as maps. An important proportion of earth system observations and simulated data can be represented as multi-dimensional array data, which has received increasingly attention in big data management and spatial-temporal analysis. Study cases will be developed in natural science such as climate change, hydrological modeling, sediment dynamics, from which the addressing of big data problems is necessary. Multi-dimensional array-based database management and analytics system such as Rasdaman, SciDB, and R will be applied to these cases. From these studies will hope to learn the strengths and weaknesses of these systems, how they might work together or how semantics of array operations differ, through addressing the problems associated with big data. Research questions include: • How can we reduce dimensions spatially and temporally, or thematically? • How can we extend existing GIS functions to work on multidimensional arrays? • How can we combine data sets of different dimensionality or different resolutions? • Can map algebra be extended to an intelligible array algebra? • What are effective semantics for array programming of dynamic data driven applications? • In which sense are space and time special, as dimensions, compared to other properties? • How can we make the analysis of multi-spectral, multi-temporal and multi-sensor earth observation data easy?
A regional adaptive and assimilative three-dimensional ionospheric model
NASA Astrophysics Data System (ADS)
Sabbagh, Dario; Scotto, Carlo; Sgrigna, Vittorio
2016-03-01
A regional adaptive and assimilative three-dimensional (3D) ionospheric model is proposed. It is able to ingest real-time data from different ionosondes, providing the ionospheric bottomside plasma frequency fp over the Italian area. The model is constructed on the basis of empirical values for a set of ionospheric parameters Pi[base] over the considered region, some of which have an assigned variation ΔPi. The values for the ionospheric parameters actually observed at a given time at a given site will thus be Pi = Pi[base] + ΔPi. These Pi values are used as input for an electron density N(h) profiler. The latter is derived from the Advanced Ionospheric Profiler (AIP), which is software used by Autoscala as part of the process of automatic inversion of ionogram traces. The 3D model ingests ionosonde data by minimizing the root-mean-square deviation between the observed and modeled values of fp(h) profiles obtained from the associated N(h) values at the points where observations are available. The ΔPi values are obtained from this minimization procedure. The 3D model is tested using data collected at the ionospheric stations of Rome (41.8N, 12.5E) and Gibilmanna (37.9N, 14.0E), and then comparing the results against data from the ionospheric station of San Vito dei Normanni (40.6N, 18.0E). The software developed is able to produce maps of the critical frequencies foF2 and foF1, and of fp at a fixed altitude, with transverse and longitudinal cross-sections of the bottomside ionosphere in a color scale. fp(h) and associated simulated ordinary ionogram traces can easily be produced for any geographic location within the Italian region. fp values within the volume in question can also be provided.
Simulational Studies of a 2-DIMENSIONAL Burridge - Model for Earthquakes
NASA Astrophysics Data System (ADS)
Ross, John Bernard
1993-01-01
A two-dimensional cellular automaton version of the Burridge-Knopoff (BK) model for earthquakes is studied. The model consists of a lattice of blocks connected by springs, subject to static friction and driven at a rate v by an externally applied force. A block ruptures provided that its total stress matches or exceeds static friction. The distance it moves is proportional to the total stress, alpha of which it releases to each of its neighbors and 1 - qalpha<=aves the system, where q is the number of neighbors. The BK model with nearest neighbor (q = 4) and long range (q = 24) interactions is simulated for spatially uniform and random static friction on lattices with periodic, open, closed, and fixed boundary conditions. In the nearest neighbor model, the system appears to have a spinodal critical point at v = v_{c} in all cases except for closed boundaries and uniform thresholds, where the system appears to be self-organized critical. The dynamics of the model is always periodic or quasiperiodic for non-closed boundaries and uniform thresholds. The stress is "quantized" in multiples of the loader force in this case. A mean field theory is presented from which v _{c} and the dominant period of oscillation is derived, which agree well with the data. v_{c} varies inversely with the number of neighbors to which each blocks is attached and, as a result, goes to zero as the range of the springs goes to infinity. This is consistent with the behavior of a spinodal critical point as the range of interactions goes to infinity. The quasistatic limit of tectonic loading is thus recovered.
Two-dimensional Rayleigh model of vapor bubble evolution
Amendt, P; Friedman, M; Glinsky, M; Gurewitz, E; London, R A; Strauss, M
1999-01-14
The understanding of vapor bubble generation in an aqueous tissue near a fiber tip has required advanced two dimensional (2D) hydrodynamic simulations. For 1D spherical bubble expansion a simplified and useful Rayleigh-type model can be applied. For 2D bubble evolution, such a model does not exist. The present work proposes a Rayleigh-type model for 2D bubble expansion that is faster and simpler than the 2D hydrodynamic simulations. The model is based on a flow potential representation of the hydrodynamic motion controlled by a Laplace equation and a moving boundary condition. We show that the 1D Rayleigh equation is a specific case of our model. The Laplace equation is solved for each time step by a finite element solver using a triangulation of the outside bubble region by a fast unstructured mesh generator. Two problems of vapor bubbles generated by short-pulse lasers near a fiber tip-are considered: (a) the outside region has no boundaries except the fiber, (b) the fiber and the bubble are confined in a long channel, which simulates a fiber in a vessel wall. Our simulations for problems of type (a) include features of bubble evolution as seen in experiments, including a collapse away from the fiber tip. A different behavior was obtained for problems of type (b) when the channel boundary is close to the fiber. In this case the bubble's expansion and collapse are both extremely slow in the direction normal to this boundary and distortion of the bubble is observed.
Construction of energy-stable Galerkin reduced order models.
Kalashnikova, Irina; Barone, Matthew Franklin; Arunajatesan, Srinivasan; van Bloemen Waanders, Bart Gustaaf
2013-05-01
This report aims to unify several approaches for building stable projection-based reduced order models (ROMs). Attention is focused on linear time-invariant (LTI) systems. The model reduction procedure consists of two steps: the computation of a reduced basis, and the projection of the governing partial differential equations (PDEs) onto this reduced basis. Two kinds of reduced bases are considered: the proper orthogonal decomposition (POD) basis and the balanced truncation basis. The projection step of the model reduction can be done in two ways: via continuous projection or via discrete projection. First, an approach for building energy-stable Galerkin ROMs for linear hyperbolic or incompletely parabolic systems of PDEs using continuous projection is proposed. The idea is to apply to the set of PDEs a transformation induced by the Lyapunov function for the system, and to build the ROM in the transformed variables. The resulting ROM will be energy-stable for any choice of reduced basis. It is shown that, for many PDE systems, the desired transformation is induced by a special weighted L2 inner product, termed the %E2%80%9Csymmetry inner product%E2%80%9D. Attention is then turned to building energy-stable ROMs via discrete projection. A discrete counterpart of the continuous symmetry inner product, a weighted L2 inner product termed the %E2%80%9CLyapunov inner product%E2%80%9D, is derived. The weighting matrix that defines the Lyapunov inner product can be computed in a black-box fashion for a stable LTI system arising from the discretization of a system of PDEs in space. It is shown that a ROM constructed via discrete projection using the Lyapunov inner product will be energy-stable for any choice of reduced basis. Connections between the Lyapunov inner product and the inner product induced by the balanced truncation algorithm are made. Comparisons are also made between the symmetry inner product and the Lyapunov inner product. The performance of ROMs constructed
Review of simplified Pseudo-two-Dimensional models of lithium-ion batteries
NASA Astrophysics Data System (ADS)
Jokar, Ali; Rajabloo, Barzin; Désilets, Martin; Lacroix, Marcel
2016-09-01
Over the last decade, many efforts have been deployed to develop models for the prediction, the control, the optimization and the parameter estimation of Lithium-ion (Li-ion) batteries. It appears that the most successful electrochemical-based model for Li-ion battery is the Pseudo-two-Dimensional model (P2D). Due to the fact that the governing equations are complex, this model cannot be used in real-time applications like Battery Management Systems (BMSs). To remedy the situation, several investigations have been carried out to simplify the P2D model. Mathematical and physical techniques are employed to reduce the order of magnitude of the P2D governing equations. The present paper is a review of the studies on the modeling of Li-ion batteries with simplified P2D models. The assumptions on which these models rest are stated, the calculation methods are examined, the advantages and the drawbacks of the models are discussed and their applications are presented. Suggestions for overcoming the shortcomings of the models are made. Challenges and future directions in the modeling of Li-ion batteries are also discussed.
Physically-based reduced order modelling of a uni-axial polysilicon MEMS accelerometer.
Ghisi, Aldo; Mariani, Stefano; Corigliano, Alberto; Zerbini, Sarah
2012-01-01
In this paper, the mechanical response of a commercial off-the-shelf, uni-axial polysilicon MEMS accelerometer subject to drops is numerically investigated. To speed up the calculations, a simplified physically-based (beams and plate), two degrees of freedom model of the movable parts of the sensor is adopted. The capability and the accuracy of the model are assessed against three-dimensional finite element simulations, and against outcomes of experiments on instrumented samples. It is shown that the reduced order model provides accurate outcomes as for the system dynamics. To also get rather accurate results in terms of stress fields within regions that are prone to fail upon high-g shocks, a correction factor is proposed by accounting for the local stress amplification induced by re-entrant corners. PMID:23202031
Physically-Based Reduced Order Modelling of a Uni-Axial Polysilicon MEMS Accelerometer
Ghisi, Aldo; Mariani, Stefano; Corigliano, Alberto; Zerbini, Sarah
2012-01-01
In this paper, the mechanical response of a commercial off-the-shelf, uni-axial polysilicon MEMS accelerometer subject to drops is numerically investigated. To speed up the calculations, a simplified physically-based (beams and plate), two degrees of freedom model of the movable parts of the sensor is adopted. The capability and the accuracy of the model are assessed against three-dimensional finite element simulations, and against outcomes of experiments on instrumented samples. It is shown that the reduced order model provides accurate outcomes as for the system dynamics. To also get rather accurate results in terms of stress fields within regions that are prone to fail upon high-g shocks, a correction factor is proposed by accounting for the local stress amplification induced by re-entrant corners. PMID:23202031
Airfoil model in Two-Dimensional Low-Turbulence Tunnel
NASA Technical Reports Server (NTRS)
1939-01-01
Airfoil model with pressure taps inside the test section of the Two-Dimensional Low-Turbulence Tunnel. The Two-Dimensional Low-Turbulence Tunnel was originally called the Refrigeration or 'Ice' tunnel because it was intended to support research on aircraft icing. The tunnel was built of wood, lined with sheet steel, and heavily insulated on the outside. Refrigeration equipment was installed to generate icing conditions inside the test section. The NACA sent out a questionnaire to airline operators, asking them to detail the specific kinds of icing problems they encountered in flight. The replies became the basis for a comprehensive research program begun in 1938 when the tunnel commenced operation. Research quickly focused on the concept of using exhaust heat to prevent ice from forming on the wing's leading edge. This project was led by Lewis Rodert, who later would win the Collier Trophy for his work on deicing. By 1940, aircraft icing research had shifted to the new Ames Research Laboratory, and the Ice tunnel was refitted with screens and honeycomb. Researchers were trying to eliminate all turbulence in the test section. From TN 1283: 'The Langley two-dimensional low-turbulence pressure tunnel is a single-return closed-throat tunnel.... The tunnel is constructed of heavy steel plate so that the pressure of the air may be varied from approximately full vacuum to 10 atmospheres absolute, thereby giving a wide range of air densities. Reciprocating compressors with a capacity of 1200 cubic feet of free air per minute provide compressed air. Since the tunnel shell has a volume of about 83,000 cubic feet, a compression rate of approximately one atmosphere per hour is obtained. ... The test section is rectangular in shape, 3 feet wide, 7 1/2 feet high, and 7 1/2 feet long. ... The over-all size of the wind-tunnel shell is about 146 feet long and 58 feet wide with a maximum diameter of 26 feet. The test section and entrance and exit cones are surrounded by a 22-foot
Reduced order component models for flexible multibody dynamics simulations
NASA Technical Reports Server (NTRS)
Tsuha, Walter S.; Spanos, John T.
1990-01-01
Many flexible multibody dynamics simulation codes require some form of component description that properly characterizes the dynamic behavior of the system. A model reduction procedure for producing low order component models for flexible multibody simulation is described. Referred to as projection and assembly, the method is a Rayleigh-Ritz approach that uses partitions of the system modal matrix as component Ritz transformation matrices. It is shown that the projection and assembly method yields a reduced system model that preserves a specified set of the full order system modes. Unlike classical component mode synthesis methods, the exactness of the method described is obtained at the expense of having to compute the full order system modes. The paper provides a comprehensive description of the method, a proof of exactness, and numerical results demonstrating the method's effectiveness.
Wightman function and vacuum fluctuations in higher dimensional brane models
Saharian, Aram A.
2006-02-15
The Wightman function and the vacuum expectation value of the field square are evaluated for a massive scalar field with a general curvature coupling parameter subject to Robin boundary conditions on two codimension-one parallel branes located on a (D+1)-dimensional background spacetime AdS{sub D{sub 1}}{sub +1}x{sigma} with a warped internal space {sigma}. The general case of different Robin coefficients on separate branes is considered. The application of the generalized Abel-Plana formula for the series over zeros of combinations of cylinder functions allows us to manifestly extract the part due to the bulk without boundaries. Unlike the purely anti-de Sitter (AdS) bulk, the vacuum expectation value of the field square induced by a single brane, in addition to the distance from the brane, depends also on the position of the brane in the bulk. The brane induced part in this expectation value vanishes when the brane position tends to the AdS horizon or the AdS boundary. The asymptotic behavior of the vacuum densities near the branes and at large distances is investigated. The contribution of Kaluza-Klein modes along {sigma} is discussed in various limiting cases. In the limit when the curvature radius for the AdS spacetime tends to infinity, we derive the results for two parallel Robin plates on the background spacetime R{sup (D{sub 1},1)}x{sigma}. For strong gravitational fields corresponding to large values of the AdS energy scale, both the single brane and interference parts of the expectation values integrated over the internal space are exponentially suppressed. As an example the case {sigma}=S{sup 1} is considered, corresponding to the AdS{sub D+1} bulk with one compactified dimension. An application to the higher dimensional generalization of the Randall-Sundrum brane model with arbitrary mass terms on the branes is discussed.
NASA Technical Reports Server (NTRS)
Lee, S. S.; Sengupta, S.; Nwadike, E. V.
1982-01-01
The six-volume report: describes the theory of a three dimensional (3-D) mathematical thermal discharge model and a related one dimensional (1-D) model, includes model verification at two sites, and provides a separate user's manual for each model. The 3-D model has two forms: free surface and rigid lid. The former, verified at Anclote Anchorage (FL), allows a free air/water interface and is suited for significant surface wave heights compared to mean water depth; e.g., estuaries and coastal regions. The latter, verified at Lake Keowee (SC), is suited for small surface wave heights compared to depth (e.g., natural or man-made inland lakes) because surface elevation has been removed as a parameter.
Three-dimensional numerical modeling of indium phosphide Point-Contact Solar Cells
NASA Technical Reports Server (NTRS)
Clark, Ralph O.
1992-01-01
The Point-Contact Solar Cell (PCSC) geometry has proven very effective for silicon cells. To date, it has not been implemented in III-V materials. In addition, modeling such a geometry is very difficult because of its three-dimensional nature. We have developed a three-dimensional finite element modeling code (FIESTA ROC). In this paper, we present results from a three-dimensional modeling study of InP point-contact solar cells.
A reduced dimensionality quantum mechanical study of the H + HCF3 ↔ H2 + CF3 reaction.
Shan, Xiao; Clary, David C
2013-11-14
Recently, the authors developed a new method to construct a two-dimensional potential energy surface (PES) for use in reduced-dimensionality quantum scattering calculations in chemical reactions. In this approach the minimum energy path of a reaction was utilized and the rest of the surface was fitted by a Morse function. Here we test this method on the H + HCF3 ↔ H2 + CF3 reaction. The geometry optimizations and frequency calculations are done at the MP2/cc-pVTZ level of theory, while the energies are calculated at the CCSD(T)/aug-cc-pVTZ level. An adiabatic energy barrier of 59.61 kJ mol(-1) for the forward direction is suggested by our calculations, and the reaction is endothermic by 10.55 kJ mol(-1) in the same direction. When compared to classical transition state theory, quantum scattering calculations suggest that a tunnelling effect can be observed in both forward and backward reactions. For the forward direction, the quantum tunnelling is important at temperatures typically lower than 300 K. It has a greater contribution to the backward reaction, and is over a wider temperature range from 200 K to 1000 K. We also conducted an analysis of the kinetic isotope effects on the backward reaction by replacing H2 with D2. These results also clearly demonstrate the significance of quantum tunnelling in the reaction. PMID:24079013
Reduced Uterine Perfusion Pressure (RUPP) Model of Preeclampsia in Mice
Fushima, Tomofumi; Sekimoto, Akiyo; Minato, Takahiro; Ito, Takuya; Oe, Yuji; Kisu, Kiyomi; Sato, Emiko; Funamoto, Kenichi; Hayase, Toshiyuki; Kimura, Yoshitaka; Ito, Sadayoshi; Sato, Hiroshi; Takahashi, Nobuyuki
2016-01-01
Preeclampsia (PE) is a pregnancy-induced hypertension with proteinuria that typically develops after 20 weeks of gestation. A reduction in uterine blood flow causes placental ischemia and placental release of anti-angiogenic factors such as sFlt-1 followed by PE. Although the reduced uterine perfusion pressure (RUPP) model is widely used in rats, investigating the role of genes on PE using genetically engineered animals has been problematic because it has been difficult to make a useful RUPP model in mice. To establish a RUPP model of PE in mice, we bilaterally ligated ovarian vessels distal to ovarian branches, uterine vessels, or both in ICR-strain mice at 14.5 days post coitum (dpc). Consequently, these mice had elevated BP, increased urinary albumin excretion, severe endotheliosis, and mesangial expansion. They also had an increased incidence of miscarriage and premature delivery. Embryonic weight at 18.5 dpc was significantly lower than that in sham mice. The closer to the ligation site the embryos were, the higher the resorption rate and the lower the embryonic weight. The phenotype was more severe in the order of ligation at the ovarian vessels < uterine vessels < both. Unlike the RUPP models described in the literature, this model did not constrict the abdominal aorta, which allowed BP to be measured with a tail cuff. This novel RUPP model in mice should be useful for investigating the pathogenesis of PE in genetically engineered mice and for evaluating new therapies for PE. PMID:27187738
Reduced Uterine Perfusion Pressure (RUPP) Model of Preeclampsia in Mice.
Fushima, Tomofumi; Sekimoto, Akiyo; Minato, Takahiro; Ito, Takuya; Oe, Yuji; Kisu, Kiyomi; Sato, Emiko; Funamoto, Kenichi; Hayase, Toshiyuki; Kimura, Yoshitaka; Ito, Sadayoshi; Sato, Hiroshi; Takahashi, Nobuyuki
2016-01-01
Preeclampsia (PE) is a pregnancy-induced hypertension with proteinuria that typically develops after 20 weeks of gestation. A reduction in uterine blood flow causes placental ischemia and placental release of anti-angiogenic factors such as sFlt-1 followed by PE. Although the reduced uterine perfusion pressure (RUPP) model is widely used in rats, investigating the role of genes on PE using genetically engineered animals has been problematic because it has been difficult to make a useful RUPP model in mice. To establish a RUPP model of PE in mice, we bilaterally ligated ovarian vessels distal to ovarian branches, uterine vessels, or both in ICR-strain mice at 14.5 days post coitum (dpc). Consequently, these mice had elevated BP, increased urinary albumin excretion, severe endotheliosis, and mesangial expansion. They also had an increased incidence of miscarriage and premature delivery. Embryonic weight at 18.5 dpc was significantly lower than that in sham mice. The closer to the ligation site the embryos were, the higher the resorption rate and the lower the embryonic weight. The phenotype was more severe in the order of ligation at the ovarian vessels < uterine vessels < both. Unlike the RUPP models described in the literature, this model did not constrict the abdominal aorta, which allowed BP to be measured with a tail cuff. This novel RUPP model in mice should be useful for investigating the pathogenesis of PE in genetically engineered mice and for evaluating new therapies for PE. PMID:27187738
An ice sheet model of reduced complexity for paleoclimate studies
NASA Astrophysics Data System (ADS)
Neff, Basil; Born, Andreas; Stocker, Thomas F.
2016-04-01
IceBern2D is a vertically integrated ice sheet model to investigate the ice distribution on long timescales under different climatic conditions. It is forced by simulated fields of surface temperature and precipitation of the Last Glacial Maximum and present-day climate from a comprehensive climate model. This constant forcing is adjusted to changes in ice elevation. Due to its reduced complexity and computational efficiency, the model is well suited for extensive sensitivity studies and ensemble simulations on extensive temporal and spatial scales. It shows good quantitative agreement with standardized benchmarks on an artificial domain (EISMINT). Present-day and Last Glacial Maximum ice distributions in the Northern Hemisphere are also simulated with good agreement. Glacial ice volume in Eurasia is underestimated due to the lack of ice shelves in our model. The efficiency of the model is utilized by running an ensemble of 400 simulations with perturbed model parameters and two different estimates of the climate at the Last Glacial Maximum. The sensitivity to the imposed climate boundary conditions and the positive degree-day factor β, i.e., the surface mass balance, outweighs the influence of parameters that disturb the flow of ice. This justifies the use of simplified dynamics as a means to achieve computational efficiency for simulations that cover several glacial cycles. Hysteresis simulations over 5 million years illustrate the stability of the simulated ice sheets to variations in surface air temperature.
A six-dimensional (Z2)3 symmetric model with warped physical space
NASA Astrophysics Data System (ADS)
Sahabandu, Chetiya; Suranyi, Peter; Rohana Wijewardhana, L. C.; Vaz, Cenalo
2008-08-01
The Randall-Sundrum model is studied in six dimension with AdS4 or dS4 metric in the physical four-dimensional space. Two solutions are found, one with induced five-dimensional gravity terms added to the induced cosmological constant terms. We study the graviton modes in both solutions by transforming the mass eigenvalue equation to a Schrodinger equation with a volcano potential. The spectrum of gravitational excitations depends on the input parameters of the theory, the six-dimensional and the effective four-dimensional cosmological constants. The model gives a physically acceptable spectrum if the four-dimensional cosmological constant is sufficiently small.
Grid Generator for Two, Three-dimensional Finite Element Subsurface Flow Models
Energy Science and Technology Software Center (ESTSC)
1993-04-28
GRIDMAKER serves as a preprocessor for finite element models in solving two- and three-dimensional subsurface flow and pollutant transport problems. It is designed to generate three-point triangular or four-point quadrilateral elements for two-dimensional domains and eight-point hexahedron elements for three-dimensional domains. A two-dimensional domain of an aquifer with a variable depth layer is treated as a special case for depth-integrated two-dimensional, finite element subsurface flow models. The program accommodates the need for aquifers with heterogeneousmore » systems by identifying the type of material in each element.« less
A theoretical study for one-dimensional modeling for VOC in a catalytic converter
NASA Astrophysics Data System (ADS)
Chauhan, S.; Sharma, L.; Srivastava, V. K.
2010-07-01
Modeling for catalytic oxidation of a volatile organic compound, acetaldehyde for the purpose of controlling tail-pipe emissions from vehicular exhaust was carried out. The model developed was one-dimensional unsteady state model, using mass and energy balance equations to predict results for acetaldehyde conversion in an adiabatic monolith operating under warm-up conditions. The equations consisted of a set of partial differential equations that are coupled and solved using Backward Implicit Scheme. Analysis of the behavior of the converter during warm up period was carried out and it was observed that the warm up was faster for a fresh catalyst and this warm up period could be reduced by introducing hot incoming exhaust gas at higher temperature.
Space-time-resolved quantum electrodynamics: A (1+1)-dimensional model
NASA Astrophysics Data System (ADS)
Glasgow, Scott; Smith, Dallas; Pritchett, Luke; Gardner, John; Ware, Michael J.
2016-06-01
We develop a model that reduces quantum electrodynamics (QED) in time plus three spatial dimensions to time plus a single spatial dimension, making it is possible to numerically calculate the dynamic behavior of simple QED systems. The dimensionality is restricted in such a way as to preserve the influence of spin and angular momentum. In contrast to the S -matrix scattering approach, these calculations are not perturbative within the zero- and one-photon sector of the relevant Hilbert space. The model restricts the electron occupation number to one and the photon occupation number to zero or one. We use this model to calculate the dynamics of a so-called bare electron that dresses itself by a photon field.
Welsch, Ralph Manthe, Uwe
2015-02-14
Initial state-selected reaction probabilities of the H + CH{sub 4} → H{sub 2} + CH{sub 3} reaction are calculated in full and reduced dimensionality on a recent neural network potential [X. Xu, J. Chen, and D. H. Zhang, Chin. J. Chem. Phys. 27, 373 (2014)]. The quantum dynamics calculation employs the quantum transition state concept and the multi-layer multi-configurational time-dependent Hartree approach and rigorously studies the reaction for vanishing total angular momentum (J = 0). The calculations investigate the accuracy of the neutral network potential and study the effect resulting from a reduced-dimensional treatment. Very good agreement is found between the present results obtained on the neural network potential and previous results obtained on a Shepard interpolated potential energy surface. The reduced-dimensional calculations only consider motion in eight degrees of freedom and retain the C{sub 3v} symmetry of the methyl fragment. Considering reaction starting from the vibrational ground state of methane, the reaction probabilities calculated in reduced dimensionality are moderately shifted in energy compared to the full-dimensional ones but otherwise agree rather well. Similar agreement is also found if reaction probabilities averaged over similar types of vibrational excitation of the methane reactant are considered. In contrast, significant differences between reduced and full-dimensional results are found for reaction probabilities starting specifically from symmetric stretching, asymmetric (f{sub 2}-symmetric) stretching, or e-symmetric bending excited states of methane.
One-dimensional frustrated plaquette compass model: Nematic phase and spontaneous multimerization
NASA Astrophysics Data System (ADS)
Brzezicki, Wojciech; Oleś, Andrzej M.
2016-06-01
We introduce a one-dimensional (1D) pseudospin model on a ladder where the Ising interactions along the legs and along the rungs alternate between XiXi +1 and ZiZi +1 for even/odd bond (rung). We include also the next-nearest-neighbor Ising interactions on plaquettes' diagonals that alternate in such a way that a model where only leg interactions are switched on is equivalent to the one when only the diagonal ones are present. Thus in the absence of rung interactions the model can interpolate between two 1D compass models. The model possesses local symmetries which are the parities within each 2 ×2 cell (plaquette) of the ladder. We find that for different values of the interaction it can realize ground states that differ by the patterns formed by these local parities. By exact diagonalization we derive detailed phase diagrams for small systems of L =4 , 6, and 8 plaquettes, and use next L =12 to identify generic phases that appear in larger systems as well. Among them we find a nematic phase with macroscopic degeneracy when the leg and diagonal interactions are equal and the rung interactions are larger than a critical value. By performing a perturbative expansion around this phase we find indeed a very complex competition around the nematic phase which has to do with releasing frustration in this range of parameters. The nematic phase is similar to the one found in the two-dimensional compass model. For particular parameters the low-energy sector of the present plaquette model reduces to a 1D compass model with spins S =1 which suggests that it realizes peculiar crossovers within the class of compass models. Finally, we show that the model can realize phases with broken translation invariance which can be either dimerized, trimerized, etc., or completely disordered and highly entangled in a well identified window of the phase diagram.
Three-Dimensional Modeling of Quasi-Homologous Solar Jets
NASA Technical Reports Server (NTRS)
Pariat, E.; Antiochos, S. K.; DeVore, C. R.
2010-01-01
Recent solar observations (e.g., obtained with Hinode and STEREO) have revealed that coronal jets are a more frequent phenomenon than previously believed. This higher frequency results, in part, from the fact that jets exhibit a homologous behavior: successive jets recur at the same location with similar morphological features. We present the results of three-dimensional (31)) numerical simulations of our model for coronal jets. This study demonstrates the ability of the model to generate recurrent 3D untwisting quasi-homologous jets when a stress is constantly applied at the photospheric boundary. The homology results from the property of the 3D null-point system to relax to a state topologically similar to its initial configuration. In addition, we find two distinct regimes of reconnection in the simulations: an impulsive 3D mode involving a helical rotating current sheet that generates the jet, and a quasi-steady mode that occurs in a 2D-like current sheet located along the fan between the sheared spines. We argue that these different regimes can explain the observed link between jets and plumes.
THREE-DIMENSIONAL MODELING OF QUASI-HOMOLOGOUS SOLAR JETS
Pariat, E.; Antiochos, S. K.; DeVore, C. R.
2010-05-10
Recent solar observations (e.g., obtained with Hinode and STEREO) have revealed that coronal jets are a more frequent phenomenon than previously believed. This higher frequency results, in part, from the fact that jets exhibit a homologous behavior: successive jets recur at the same location with similar morphological features. We present the results of three-dimensional (3D) numerical simulations of our model for coronal jets. This study demonstrates the ability of the model to generate recurrent 3D untwisting quasi-homologous jets when a stress is constantly applied at the photospheric boundary. The homology results from the property of the 3D null-point system to relax to a state topologically similar to its initial configuration. In addition, we find two distinct regimes of reconnection in the simulations: an impulsive 3D mode involving a helical rotating current sheet that generates the jet and a quasi-steady mode that occurs in a 2D-like current sheet located along the fan between the sheared spines. We argue that these different regimes can explain the observed link between jets and plumes.
One-dimensional extended Hubbard model in the atomic limit
NASA Astrophysics Data System (ADS)
Mancini, F.; Mancini, F. P.
2008-06-01
We present the exact solution of the one-dimensional extended Hubbard model in the atomic limit within the Green’s function and equations of motion formalism. We provide a comprehensive and systematic analysis of the model by considering all the relevant response and correlation functions as well as thermodynamic quantities in the whole parameters space. At zero temperature we identify four phases in the plane (U,n) ( U is the on-site potential and n is the filling) and relative phase transitions as well as different types of charge ordering. These features are endorsed by investigating at T=0 the chemical potential and pertinent local correlators, the particle and double occupancy correlation functions, the entropy, and by studying the behavior in the limit T→0 of the charge and spin susceptibilities. A detailed study of the thermodynamic quantities is also presented at finite temperature. This study evidences that a finite-range order persists for a wide range of the temperature, as shown by the behavior of the correlation functions and by the two-peak structure exhibited by the charge susceptibility and by the entropy. Moreover, the equations of motion formalism, together with the use of composite operators, allows us to exactly determine the set of elementary excitations. As a result, the density of states can be determined and a detailed analysis of the specific heat allows for identifying the excitations and for ascribing its two-peak structure to a redistribution of the charge density.
Modelling for three dimensional coalescence of two bubbles
NASA Astrophysics Data System (ADS)
Han, R.; Li, S.; Zhang, A. M.; Wang, Q. X.
2016-06-01
This paper is concerned with the three dimensional (3D) interaction and coalescence of two bubbles subject to buoyancy and the dynamics of the subsequent joined bubble using the boundary integral method (BIM). An improved density potential method is implemented to control the mesh quality. It helps to avoid the numerical instabilities, which occur after coalescence. Numerical convergence tests are conducted in terms of mesh sizes and time steps. The 3D numerical model agrees well with an axisymmetric BIM model for axisymmetric cases as well as experimental results captured by high-speed camera. The bubble jetting, interaction, and coalescence of the two bubbles depend on the maximum bubble radii, the centre distance between two bubbles at inception, and the angle β between the centre line and the direction of buoyancy. We investigate coalescence of two bubbles for β = 0, π/4, and π/2, respectively, and at various centre distances at inception. Numerical results presented include the bubble and jet shapes, the velocity, and pressure fields surrounding the bubbles, as well as the time histories of bubble volumes, jet velocities, and positions of centroid of the bubble system.
Bohr model and dimensional scaling analysis of atoms and molecules
NASA Astrophysics Data System (ADS)
Svidzinsky, Anatoly; Chen, Goong; Chin, Siu; Kim, Moochan; Ma, Dongxia; Murawski, Robert; Sergeev, Alexei; Scully, Marlan; Herschbach, Dudley
It is generally believed that the old quantum theory, as presented by Niels Bohr in 1913, fails when applied to few electron systems, such as the H2 molecule. Here we review recent developments of the Bohr model that connect it with dimensional scaling procedures adapted from quantum chromodynamics. This approach treats electrons as point particles whose positions are determined by optimizing an algebraic energy function derived from the large-dimension limit of the Schrödinger equation. The calculations required are simple yet yield useful accuracy for molecular potential curves and bring out appealing heuristic aspects. We first examine the ground electronic states of H2, HeH, He2, LiH, BeH and Li2. Even a rudimentary Bohr model, employing interpolation between large and small internuclear distances, gives good agreement with potential curves obtained from conventional quantum mechanics. An amended Bohr version, augmented by constraints derived from Heitler-London or Hund-Mulliken results, dispenses with interpolation and gives substantial improvement for H2 and H3. The relation to D-scaling is emphasized. A key factor is the angular dependence of the Jacobian volume element, which competes with interelectron repulsion. Another version, incorporating principal quantum numbers in the D-scaling transformation, extends the Bohr model to excited S states of multielectron atoms. We also discuss kindred Bohr-style applications of D-scaling to the H atom subjected to superstrong magnetic fields or to atomic anions subjected to high frequency, superintense laser fields. In conclusion, we note correspondences to the prequantum bonding models of Lewis and Langmuir and to the later resonance theory of Pauling, and discuss prospects for joining D-scaling with other methods to extend its utility and scope.
NASA Astrophysics Data System (ADS)
Tumkur, Ravi Kumar R.; Domany, Elad; Gendelman, Oleg V.; Masud, Arif; Bergman, Lawrence A.; Vakakis, Alexander F.
2013-07-01
The nonlinear interaction of a laminar flow and a sprung rigid circular cylinder results in vortex-induced vibration (VIV) of the cylinder. Passive suppression of the VIV by attaching an internal nonlinear vibration absorber that acts, in essence, as a nonlinear energy sink (NES) to the cylinder has been observed in finite-element computations involving thousands of degrees of freedom (DOF). A single-DOF self-excited oscillator is developed to approximate the limit-cycle oscillation (LCO) of the cylinder undergoing VIV. This self-excited oscillator models the interaction of the flow and the cylinder. Then, a two-DOF reduced-order model for the system with the internal NES is constructed by coupling the single-DOF NES to the single-DOF self-excited oscillator. Hence, the complicated high-dimensional system of flow-cylinder-NES involving thousands of DOF is reduced to a two-DOF model. The two targeted energy transfer mechanisms responsible for passive VIV suppression that are observed in the finite-element computations are fully reproduced using the two-DOF reduced-order model. This reduction of the dynamics to an easily tractable low-dimensional reduced-order model facilitates the approximate analysis of the underlying dynamics. Moreover, the underlying assumptions of the order reduction, and the parameter ranges of validity of the reduced-order model are formulated and systematically studied.
Blended Linear Models for Reduced Compliant Mechanical Systems.
Andrews, Sheldon; Teichmann, Marek; Kry, Paul G
2016-03-01
We present a method for the simulation of compliant, articulated structures using a plausible approximate model that focuses on modeling endpoint interaction. We approximate the structure's behavior about a reference configuration, resulting in a first order reduced compliant system, or FORK (-1) S. Several levels of approximation are available depending on which parts and surfaces we would like to have interactive contact forces, allowing various levels of detail to be selected. Our approach is fast and computation of the full structure's state may be parallelized. Furthermore, we present a method for reducing error by combining multiple FORK (-1)S models at different linearization points, through twist blending and matrix interpolation. Our approach is suitable for stiff, articulate grippers, such as those used in robotic simulation, or physics-based characters under static proportional derivative control. We demonstrate that simulations with our method can deal with kinematic chains and loops with non-uniform stiffness across joints, and that it produces plausible effects due to stiffness, damping, and inertia. PMID:26829238
VALIDITY OF A TWO-DIMENSIONAL MODEL FOR VARIABLE-DENSITY HYDRODYNAMIC CIRCULATION
A three-dimensional model of temperatures and currents has been formulated to assist in the analysis and interpretation of the dynamics of stratified lakes. In this model, nonlinear eddy coefficients for viscosity and conductivities are included. A two-dimensional model (one vert...
Comparisons between thermodynamic and one-dimensional combustion models of spark-ignition engines
NASA Technical Reports Server (NTRS)
Ramos, J. I.
1986-01-01
Results from a one-dimensional combustion model employing a constant eddy diffusivity and a one-step chemical reaction are compared with those of one-zone and two-zone thermodynamic models to study the flame propagation in a spark-ignition engine. One-dimensional model predictions are found to be very sensitive to the eddy diffusivity and reaction rate data. The average mixing temperature found using the one-zone thermodynamic model is higher than those of the two-zone and one-dimensional models during the compression stroke, and that of the one-dimensional model is higher than those predicted by both thermodynamic models during the expansion stroke. The one-dimensional model is shown to predict an accelerating flame even when the front approaches the cold cylinder wall.
Enforcing elemental mass and energy balances for reduced order models
Ma, J.; Agarwal, K.; Sharma, P.; Lang, Y.; Zitney, S.; Gorton, I.; Agawal, D.; Miller, D.
2012-01-01
Development of economically feasible gasification and carbon capture, utilization and storage (CCUS) technologies requires a variety of software tools to optimize the designs of not only the key devices involved (e., g., gasifier, CO{sub 2} adsorber) but also the entire power generation system. High-fidelity models such as Computational Fluid Dynamics (CFD) models are capable of accurately simulating the detailed flow dynamics, heat transfer, and chemistry inside the key devices. However, the integration of CFD models within steady-state process simulators, and subsequent optimization of the integrated system, still presents significant challenges due to the scale differences in both time and length, as well the high computational cost. A reduced order model (ROM) generated from a high-fidelity model can serve as a bridge between the models of different scales. While high-fidelity models are built upon the principles of mass, momentum, and energy conservations, ROMs are usually developed based on regression-type equations and hence their predictions may violate the mass and energy conservation laws. A high-fidelity model may also have the mass and energy balance problem if it is not tightly converged. Conservations of mass and energy are important when a ROM is integrated to a flowsheet for the process simulation of the entire chemical or power generation system, especially when recycle streams are connected to the modeled device. As a part of the Carbon Capture Simulation Initiative (CCSI) project supported by the U.S. Department of Energy, we developed a software framework for generating ROMs from CFD simulations and integrating them with Process Modeling Environments (PMEs) for system-wide optimization. This paper presents a method to correct the results of a high-fidelity model or a ROM such that the elemental mass and energy are conserved perfectly. Correction factors for the flow rates of individual species in the product streams are solved using a
Three-Dimensional Electron Optics Model Developed for Traveling-Wave Tubes
NASA Technical Reports Server (NTRS)
Kory, Carol L.
2000-01-01
A three-dimensional traveling-wave tube (TWT) electron beam optics model including periodic permanent magnet (PPM) focusing has been developed at the NASA Glenn Research Center at Lewis Field. This accurate model allows a TWT designer to develop a focusing structure while reducing the expensive and time-consuming task of building the TWT and hot-testing it (with the electron beam). In addition, the model allows, for the first time, an investigation of the effect on TWT operation of the important azimuthally asymmetric features of the focusing stack. The TWT is a vacuum device that amplifies signals by transferring energy from an electron beam to a radiofrequency (RF) signal. A critically important component is the focusing structure, which keeps the electron beam from diverging and intercepting the RF slow wave circuit. Such an interception can result in excessive circuit heating and decreased efficiency, whereas excessive growth in the beam diameter can lead to backward wave oscillations and premature saturation, indicating a serious reduction in tube performance. The most commonly used focusing structure is the PPM stack, which consists of a sequence of cylindrical iron pole pieces and opposite-polarity magnets. Typically, two-dimensional electron optics codes are used in the design of magnetic focusing devices. In general, these codes track the beam from the gun downstream by solving equations of motion for the electron beam in static-electric and magnetic fields in an azimuthally symmetric structure. Because these two-dimensional codes cannot adequately simulate a number of important effects, the simulation code MAFIA (solution of Maxwell's equations by the Finite-Integration-Algorithm) was used at Glenn to develop a three-dimensional electron optics model. First, a PPM stack was modeled in three dimensions. Then, the fields obtained using the magnetostatic solver were loaded into a particle-in-cell solver where the fully three-dimensional behavior of the beam
A one-dimensional model for gas-solid heat transfer in pneumatic conveying
NASA Astrophysics Data System (ADS)
Smajstrla, Kody Wayne
A one-dimensional ODE model reduced from a two-fluid model of a higher dimensional order is developed to study dilute, two-phase (air and solid particles) flows with heat transfer in a horizontal pneumatic conveying pipe. Instead of using constant air properties (e.g., density, viscosity, thermal conductivity) evaluated at the initial flow temperature and pressure, this model uses an iteration approach to couple the air properties with flow pressure and temperature. Multiple studies comparing the use of constant or variable air density, viscosity, and thermal conductivity are conducted to study the impact of the changing properties to system performance. The results show that the fully constant property calculation will overestimate the results of the fully variable calculation by 11.4%, while the constant density with variable viscosity and thermal conductivity calculation resulted in an 8.7% overestimation, the constant viscosity with variable density and thermal conductivity overestimated by 2.7%, and the constant thermal conductivity with variable density and viscosity calculation resulted in a 1.2% underestimation. These results demonstrate that gas properties varying with gas temperature can have a significant impact on a conveying system and that the varying density accounts for the majority of that impact. The accuracy of the model is also validated by comparing the simulation results to the experimental values found in the literature.
A quasi-one-dimensional model of thermoacoustics in the presence of mean flow
NASA Astrophysics Data System (ADS)
Holzinger, Tobias; Baumgartner, Armin; Polifke, Wolfgang
2015-01-01
In thermoacoustic regenerators, the interaction of thermo-viscous boundary layers and axial temperature gradients causes a conversion from thermal energy to acoustic power or vice versa. In this paper, an improved analytical model for thermoacoustic boundary layer effects in the presence of mean flow is derived and analyzed. Previous formulations of the thermo-acoustic effect take into account effects of mean flow on acoustic propagation only implicitly, i.e. in as much as mean flow influences the mean temperature field. The new model, however, includes additional terms in the perturbation equations, which describe explicitly the interaction between steady mean flow and acoustics. For a parallel plate pore the three-dimensional thermoacoustic equations are derived and reduced to a transversally averaged system of differential equations by applying Green's function technique and suitable assumptions. The resulting one-dimensional perturbation equations are then solved numerically for two sets of boundary conditions to obtain the linear scattering matrix coefficients. The solutions, generated for a wide range of frequencies, can be applied in a low-order "network model" context to study the stability of thermoacoustic devices. The impact of mean flow on the thermoacoustic interaction is investigated and validated against full computational fluid dynamics simulations of laminar, compressible flow for one specific configuration. It is shown that at low frequencies (Womersley number < 1) the new formulation predicts the acoustic behavior more accurately than the earlier formulations. Finally, the ideas and benefit of further improved and more complex models for higher Mach numbers are discussed.
Minnelide reduces tumor burden in preclinical models of osteosarcoma
Banerjee, Sulagna; Thayanithy, Venugopal; Sangwan, Veena; Mackenzie, Tiffany N.; Saluja, Ashok K.; Subramanian, Subbaya
2015-01-01
Osteosarcoma is the most common bone cancer in children and adolescents with a five-year survival rate of about 70%. In this study, we have evaluated the preclinical therapeutic efficacy of the novel synthetic drug, Minnelide, a prodrug of triptolide on osteosarcoma. Triptolide was effective in significantly inducing apoptosis in all osteosarcoma cell lines tested but had no significant effect on the human osteoblast cells. Notably, Minnelide treatment significantly reduced tumor burden and lung metastasis in the orthotopic and lung colonization models. Triptolide/Minnelide effectively downregulated the levels of pro-survival proteins such as heat shock proteins, cMYC, survivin and targets NF-κB pathway. PMID:23499892
Minnelide reduces tumor burden in preclinical models of osteosarcoma.
Banerjee, Sulagna; Thayanithy, Venugopal; Sangwan, Veena; Mackenzie, Tiffany N; Saluja, Ashok K; Subramanian, Subbaya
2013-07-28
Osteosarcoma is the most common bone cancer in children and adolescents with a 5-year survival rate of about 70%. In this study, we have evaluated the preclinical therapeutic efficacy of the novel synthetic drug, Minnelide, a prodrug of triptolide on osteosarcoma. Triptolide was effective in significantly inducing apoptosis in all osteosarcoma cell lines tested but had no significant effect on the human osteoblast cells. Notably, Minnelide treatment significantly reduced tumor burden and lung metastasis in the orthotopic and lung colonization models. Triptolide/Minnelide effectively downregulated the levels of pro-survival proteins such as heat shock proteins, cMYC, survivin and targets the NF-κB pathway. PMID:23499892
Development and validation of a two-dimensional fast-response flood estimation model
Judi, David R; Mcpherson, Timothy N; Burian, Steven J
2009-01-01
A finite difference formulation of the shallow water equations using an upwind differencing method was developed maintaining computational efficiency and accuracy such that it can be used as a fast-response flood estimation tool. The model was validated using both laboratory controlled experiments and an actual dam breach. Through the laboratory experiments, the model was shown to give good estimations of depth and velocity when compared to the measured data, as well as when compared to a more complex two-dimensional model. Additionally, the model was compared to high water mark data obtained from the failure of the Taum Sauk dam. The simulated inundation extent agreed well with the observed extent, with the most notable differences resulting from the inability to model sediment transport. The results of these validation studies complex two-dimensional model. Additionally, the model was compared to high water mark data obtained from the failure of the Taum Sauk dam. The simulated inundation extent agreed well with the observed extent, with the most notable differences resulting from the inability to model sediment transport. The results of these validation studies show that a relatively numerical scheme used to solve the complete shallow water equations can be used to accurately estimate flood inundation. Future work will focus on further reducing the computation time needed to provide flood inundation estimates for fast-response analyses. This will be accomplished through the efficient use of multi-core, multi-processor computers coupled with an efficient domain-tracking algorithm, as well as an understanding of the impacts of grid resolution on model results.
Lü, Xing; Tian, Bo; Zhang, Hai-Qiang; Xu, Tao; Li, He
2010-12-01
Gardner model describes certain nonlinear elastic structures, ion-acoustic waves in plasmas, and shear flows in ocean and atmosphere. In this paper, by virtue of the computerized symbolic computation, the integrability of a generalized (2+1)-dimensional variable-coefficient Gardner model is investigated. Painlevé integrability conditions are derived among the coefficient functions, which reduce all the coefficient functions to be proportional only to γ(t), the coefficient of the cubic nonlinear term u(2)u(x). Then, an independent transformation of the variable t transforms the reduced γ(t)-dependent equation into a constant-coefficient integrable one. Painlevé test shows that this is the only case when our original generalized (2+1)-dimensional variable-coefficient Gardner model is integrable. PMID:21198095
Chemistry and Transport in a Multi-Dimensional Model
NASA Technical Reports Server (NTRS)
Yung, Yuk L.
2004-01-01
Our work has two primary scientific goals, the interannual variability (IAV) of stratospheric ozone and the hydrological cycle of the upper troposphere and lower stratosphere. Our efforts are aimed at integrating new information obtained by spacecraft and aircraft measurements to achieve a better understanding of the chemical and dynamical processes that are needed for realistic evaluations of human impact on the global environment. A primary motivation for studying the ozone layer is to separate the anthropogenic perturbations of the ozone layer from natural variability. Using the recently available merged ozone data (MOD), we have carried out an empirical orthogonal function EOF) study of the temporal and spatial patterns of the IAV of total column ozone in the tropics. The outstanding problem about water in the stratosphere is its secular increase in the last few decades. The Caltech/PL multi-dimensional chemical transport model (CTM) photochemical model is used to simulate the processes that control the water vapor and its isotopic composition in the stratosphere. Datasets we will use for comparison with model results include those obtained by the Total Ozone Mapping Spectrometer (TOMS), the Solar Backscatter Ultraviolet (SBUV and SBUV/2), Stratosphere Aerosol and Gas Experiment (SAGE I and II), the Halogen Occultation Experiment (HALOE), the Atmospheric Trace Molecular Spectroscopy (ATMOS) and those soon to be obtained by the Cirrus Regional Study of Tropical Anvils and Cirrus Layers Florida Area Cirrus Experiment (CRYSTAL-FACE) mission. The focus of the investigations is the exchange between the stratosphere and the troposphere, and between the troposphere and the biosphere.
Reduced Modeling of Electron Trapping Nonlinearity in Raman Scattering
NASA Astrophysics Data System (ADS)
Strozzi, D. J.; Berger, R. L.; Rose, H. A.; Langdon, A. B.; Williams, E. A.
2009-11-01
The trapping of resonant electrons in Langmuir waves generated by stimulated Raman scattering (SRS) gives rise to several nonlinear effects, which can either increase or decrease the reflectivity. We have implemented a reduced model of these nonlinearities in the paraxial propagation code pF3D [R. L. Berger et al., Phys. Plasmas 5 (1998)], consisting of a Landau damping reduction and Langmuir-wave frequency downshift. Both effects depend on the local wave amplitude, and gradually turn on with amplitude. This model is compared with 1D seeded Vlasov simulations, that include a Krook relaxation operator to mimic, e.g., transverse sideloss out of a multi-D, finite laser speckle. SRS in these runs develops from a counter-propagating seed light wave. Applications to ICF experiments will also be presented.
Reducing temperature uncertainties by stochastic geothermal reservoir modelling
NASA Astrophysics Data System (ADS)
Vogt, C.; Mottaghy, D.; Wolf, A.; Rath, V.; Pechnig, R.; Clauser, C.
2010-04-01
Quantifying and minimizing uncertainty is vital for simulating technically and economically successful geothermal reservoirs. To this end, we apply a stochastic modelling sequence, a Monte Carlo study, based on (i) creating an ensemble of possible realizations of a reservoir model, (ii) forward simulation of fluid flow and heat transport, and (iii) constraining post-processing using observed state variables. To generate the ensemble, we use the stochastic algorithm of Sequential Gaussian Simulation and test its potential fitting rock properties, such as thermal conductivity and permeability, of a synthetic reference model and-performing a corresponding forward simulation-state variables such as temperature. The ensemble yields probability distributions of rock properties and state variables at any location inside the reservoir. In addition, we perform a constraining post-processing in order to minimize the uncertainty of the obtained distributions by conditioning the ensemble to observed state variables, in this case temperature. This constraining post-processing works particularly well on systems dominated by fluid flow. The stochastic modelling sequence is applied to a large, steady-state 3-D heat flow model of a reservoir in The Hague, Netherlands. The spatial thermal conductivity distribution is simulated stochastically based on available logging data. Errors of bottom-hole temperatures provide thresholds for the constraining technique performed afterwards. This reduce the temperature uncertainty for the proposed target location significantly from 25 to 12K (full distribution width) in a depth of 2300m. Assuming a Gaussian shape of the temperature distribution, the standard deviation is 1.8K. To allow a more comprehensive approach to quantify uncertainty, we also implement the stochastic simulation of boundary conditions and demonstrate this for the basal specific heat flow in the reservoir of The Hague. As expected, this results in a larger distribution width
Continuum modeling of three-dimensional truss-like space structures
NASA Technical Reports Server (NTRS)
Nayfeh, A. H.; Hefzy, M. S.
1978-01-01
A mathematical and computational analysis capability has been developed for calculating the effective mechanical properties of three-dimensional periodic truss-like structures. Two models are studied in detail. The first, called the octetruss model, is a three-dimensional extension of a two-dimensional model, and the second is a cubic model. Symmetry considerations are employed as a first step to show that the specific octetruss model has four independent constants and that the cubic model has two. The actual values of these constants are determined by averaging the contributions of each rod element to the overall structure stiffness. The individual rod member contribution to the overall stiffness is obtained by a three-dimensional coordinate transformation. The analysis shows that the effective three-dimensional elastic properties of both models are relatively close to each other.
A Taxonomic Reduced-Space Pollen Model for Paleoclimate Reconstruction
NASA Astrophysics Data System (ADS)
Wahl, E. R.; Schoelzel, C.
2010-12-01
Paleoenvironmental reconstruction from fossil pollen often attempts to take advantage of the rich taxonomic diversity in such data. Here, a taxonomically "reduced-space" reconstruction model is explored that would be parsimonious in introducing parameters needing to be estimated within a Bayesian Hierarchical Modeling context. This work involves a refinement of the traditional pollen ratio method. This method is useful when one (or a few) dominant pollen type(s) in a region have a strong positive correlation with a climate variable of interest and another (or a few) dominant pollen type(s) have a strong negative correlation. When, e.g., counts of pollen taxa a and b (r >0) are combined with pollen types c and d (r <0) to form ratios of the form (a + b) / (a + b + c + d), an appropriate estimation form is the binomial logistic generalized linear model (GLM). The GLM can readily model this relationship in the forward form, pollen = g(climate), which is more physically realistic than inverse models often used in paleoclimate reconstruction [climate = f(pollen)]. The specification of the model is: rnum Bin(n,p), where E(r|T) = p = exp(η)/[1+exp(η)], and η = α + β(T); r is the pollen ratio formed as above, rnum is the ratio numerator, n is the ratio denominator (i.e., the sum of pollen counts), the denominator-specific count is (n - rnum), and T is the temperature at each site corresponding to a specific value of r. Ecological and empirical screening identified the model (Spruce+Birch) / (Spruce+Birch+Oak+Hickory) for use in temperate eastern N. America. α and β were estimated using both "traditional" and Bayesian GLM algorithms (in R). Although it includes only four pollen types, the ratio model yields more explained variation ( 80%) in the pollen-temperature relationship of the study region than a 64-taxon modern analog technique (MAT). Thus, the new pollen ratio method represents an information-rich, reduced space data model that can be efficiently employed in
Triptolide reduces cystogenesis in a model of ADPKD.
Leuenroth, Stephanie J; Bencivenga, Natasha; Igarashi, Peter; Somlo, Stefan; Crews, Craig M
2008-09-01
Mutations in PKD1 result in autosomal dominant polycystic kidney disease, which is characterized by increased proliferation of tubule cells leading to cyst initiation and subsequent expansion. Given the cell proliferation associated with cyst growth, an attractive therapeutic strategy has been to target the hyperproliferative nature of the disease. We previously demonstrated that the small molecule triptolide induces cellular calcium release through a polycystin-2-dependent pathway, arrests Pkd1(-/-) cell growth, and reduces cystic burden in Pkd1(-/-) embryonic mice. To assess cyst progression in neonates, we used the kidney-specific Pkd1(flox/-);Ksp-Cre mouse model of autosomal dominant polycystic kidney disease, in which the burden of cysts is negligible at birth but then progresses rapidly over days. The number, size, and proliferation rate of cysts were examined. Treatment with triptolide significantly improved renal function at postnatal day 8 by inhibition of the early phases of cyst growth. Because the proliferative index of kidney epithelium in neonates versus adults is significantly different, future studies will need to address whether triptolide delays or reduces cyst progression in the Pkd1 adult model. PMID:18650476
Informing Investment to Reduce Inequalities: A Modelling Approach
McAuley, Andrew; Denny, Cheryl; Taulbut, Martin; Mitchell, Rory; Fischbacher, Colin; Graham, Barbara; Grant, Ian; O’Hagan, Paul; McAllister, David; McCartney, Gerry
2016-01-01
Background Reducing health inequalities is an important policy objective but there is limited quantitative information about the impact of specific interventions. Objectives To provide estimates of the impact of a range of interventions on health and health inequalities. Materials and Methods Literature reviews were conducted to identify the best evidence linking interventions to mortality and hospital admissions. We examined interventions across the determinants of health: a ‘living wage’; changes to benefits, taxation and employment; active travel; tobacco taxation; smoking cessation, alcohol brief interventions, and weight management services. A model was developed to estimate mortality and years of life lost (YLL) in intervention and comparison populations over a 20-year time period following interventions delivered only in the first year. We estimated changes in inequalities using the relative index of inequality (RII). Results Introduction of a ‘living wage’ generated the largest beneficial health impact, with modest reductions in health inequalities. Benefits increases had modest positive impacts on health and health inequalities. Income tax increases had negative impacts on population health but reduced inequalities, while council tax increases worsened both health and health inequalities. Active travel increases had minimally positive effects on population health but widened health inequalities. Increases in employment reduced inequalities only when targeted to the most deprived groups. Tobacco taxation had modestly positive impacts on health but little impact on health inequalities. Alcohol brief interventions had modestly positive impacts on health and health inequalities only when strongly socially targeted, while smoking cessation and weight-reduction programmes had minimal impacts on health and health inequalities even when socially targeted. Conclusions Interventions have markedly different effects on mortality, hospitalisations and
Salloum, Maher; Knio, Omar M.
2010-06-15
A transient multidimensional reduced model is constructed for the simulation of reaction fronts in Ni/Al multilayers. The formulation is based on the generalization of earlier methodologies developed for quasi-1D axial and normal propagation, specifically by adapting the reduced formalism for atomic mixing and heat release. This approach enables us to focus on resolving the thermal front structure, whose evolution is governed by thermal diffusion and heat release. A mixed integration scheme is used for this purpose, combining an extended-stability, Runge-Kutta-Chebychev (RKC) integration of the diffusion term with exact treatment of the chemical source term. Thus, a detailed description of atomic mixing within individual layers is avoided, which enables transient modeling of the reduced equations of motion in multiple dimensions. Two-dimensional simulations are first conducted of front propagation in composites combining two bilayer periods. Results are compared with the experimental measurements of Knepper et al., which reveal that the reaction velocity can depend significantly on layering frequency. The comparison indicates that, using a concentration-dependent conductivity model, the transient 2D computations can reasonably reproduce the experimental behavior. Additional tests are performed based on 3D computations of surface initiated reactions. Comparison of computed predictions with laser ignition measurements indicates that the computations provide reasonable estimates of ignition thresholds. A detailed discussion is finally provided of potential generalizations and associated hurdles. (author)
Three-dimensional Thermal Model of the Mexican Subduction Zone
NASA Astrophysics Data System (ADS)
Rosas, J. C.; Pimentel, F. D. C.; Currie, C. A.; He, J.; Harris, R. N.
2015-12-01
Along the Mexican section of the Middle America Trench (MAT), the Cocos plate subducts beneath the North American plate. The most important feature of this subduction zone is the flat-slab section below central Mexico, extending approximately 250 km landward from the trench at a depth of 50 km. Further west, the dip changes to 45-50º. This particular geometry has several unique consequences, such as a volcanic arc that is not aligned with the trench and very shallow slab seismicity. For the mantle wedge, the abrupt change in slab geometry could lead to a three-dimensional (3D) mantle wedge flow that departs from the classical 2D subduction-driven corner flow. Evidence of 3D flow in the region comes from seismic anisotropy studies, which show that olivine fast-direction axes have a component that is parallel to the MAT. In other subduction zones, such as Costa Rica-Nicaragua and Japan, 3D flow has been observed to increase temperatures by >50º C relative to corner flow models.For this study, we have created the first 3D finite-element model of the Mexican subduction zone in order to analyze its thermal structure. Our objective is to assess the effects of 3D mantle flow and hydrothermal circulation (HC) in the subducting slab. In this region, low surface heat flow values near the trench indicate that HC may remove heat from the oceanic plate. Our model incorporates the effect of HC through conductivity proxies in the subducting crust and a 2D oceanic geotherm that includes the age variations of the Cocos plate along the MAT. For an isoviscous mantle, our model shows that the slab dip variations induce a flow that departs from 2D corner flow near the transition between the flat-slab and normal-dipping sections. The mantle flows in eastward direction toward the flat slab, and its orientation is consistent with seismic anisotropy studies. The maximum along-margin flow rate is nearly 2 cm/yr, which is >30% of the convergence rate. Temperatures at the location of this
Three-dimensional parabolic equation modeling of mesoscale eddy deflection.
Heaney, Kevin D; Campbell, Richard L
2016-02-01
The impact of mesoscale oceanography, including ocean fronts and eddies, on global scale low-frequency acoustics is examined using a fully three-dimensional parabolic equation model. The narrowband acoustic signal, for frequencies from 2 to 16 Hz, is simulated from a seismic event on the Kerguellen Plateau in the South Indian Ocean to an array of receivers south of Ascension Island in the South Atlantic, a distance of 9100 km. The path was chosen for its relevance to seismic detections from the HA10 Ascension Island station of the International Monitoring System, for its lack of bathymetric interaction, and for the dynamic oceanography encountered as the sound passes the Cape of Good Hope. The acoustic field was propagated through two years (1992 and 1993) of the eddy-permitting ocean state estimation ECCO2 (Estimating the Circulation and Climate of the Ocean, Phase II) system. The range of deflection of the back-azimuth was 1.8° with a root-mean-square of 0.34°. The refraction due to mesoscale oceanography could therefore have significant impacts upon localization of distant low-frequency sources, such as seismic or nuclear test events. PMID:26936572
Electromagnetic quantum effects in higher-dimensional cosmological models
NASA Astrophysics Data System (ADS)
Kotanjyan, Anna; Sargsyan, Hayk; Simonyan, David; Saharian, Aram
2016-07-01
Among the most interesting directions in quantum field theory on curved spacetimes is the investigation of the influence of the gravitational field on the properties of the quantum vacuum. The corresponding problems are exactly solvable for highly symmetric background geometries only. In particular, the investigations of quantum effects in de Sitter (dS) and anti-de Sitter (AdS) spacetimes have attracted a great deal of attention. We consider electromagnetic quantum effects in higher-dimensional cosmological models. The two-point functions of the vector potential and of the field tensor for the electromagnetic field in background of dS and AdS spacetime are evaluated in arbitrary number of spatial dimensions. First we consider the two-point functions in the boundary-free geometry and then generalize the results in the presence of a reflecting boundary, for AdS spacetimes parallel to the AdS horizon. By using the expressions for the two-point functions of the field tensor, we investigate the vacuum expectation values of the electric field squared and of the energy-momentum tensor. Simple asymptotic expressions are provided for both cases, in particular for AdS geometry near the AdS boundary and horizon.
Efimov-Like Behaviour in Low-Dimensional Polymer Models
NASA Astrophysics Data System (ADS)
Mura, Federica; Bhattacharjee, Somendra M.; Maji, Jaya; Masetto, Mario; Seno, Flavio; Trovato, Antonio
2016-05-01
In the quantum Efimov effect, identical bosons form infinitely many bound trimer states at the bound dimer dissociation threshold, with their energy spectrum obeying a universal geometrical scaling law. Inspired by the formal correspondence between the possible trajectories of a quantum particle and the possible conformations of a polymer chain, the existence of a triple-stranded DNA bound state when a double-stranded DNA is not stable was recently predicted by modelling three directed polymer chains in low-dimensional lattices, both fractal (d<1 ) and euclidean (d=1 ). A finite melting temperature for double-stranded DNA requires in d≤ 2 the introduction of a weighting factor penalizing the formation of denaturation bubbles, that is non-base paired portions of DNA. The details of how bubble weighting is defined for a three-chain system were shown to crucially affect the presence of Efimov-like behaviour on a fractal lattice. Here we assess the same dependence on the euclidean 1+1 lattice, by setting up the transfer matrix method for three infinitely long chains confined in a finite size geometry. This allows us to discriminate unambiguously between the absence of Efimov-like behaviour and its presence in a very narrow temperature range, in close correspondence with what was already found on the fractal lattice. When present, however, no evidence is found for triple-stranded bound states other than the ground state at the two-chain melting temperature.
Doping induced Mott transition in the two dimensional Hubbard model
NASA Astrophysics Data System (ADS)
Sordi, Giovanni; Tremblay, A.-M. S.
2010-03-01
The description of the Mott transition by single-site dynamical mean-field theory is exact in infinite dimensions but, in two dimensions, substantial deviations from those results have been found for the interaction driven transition [1]. In addition, the experimentally relevant transition for layered systems such as the high-Tc cuprates is doping driven. We thus study this transition in the two dimensional Hubbard model on the square lattice using cluster dynamical mean-field theory with continuous-time quantum Monte Carlo in the hybridization expansion [2]. We find that the Mott transition is strongly influenced by the inclusion of short-range antiferromagnetic correlations. Doping of the Mott insulating state occurs gradually in the different momentum sectors, as found in previous studies [3], but in addition we find a first order transition between an incoherent metal and an insulator or between two incoherent metals, depending on interaction strength. Short range spin correlations create a pseudogap in a doping range that increases with interaction. [1] H. Park et al., PRL 101, 186403 (2008) [2] K. Haule, PRB 75, 155113 (2007) [3] E. Gull et al., arXiv:0909.1795 (2009)
Four dimensional deformable image registration using trajectory modeling
Castillo, Edward; Castillo, Richard; Martinez, Josue; Shenoy, Maithili; Guerrero, Thomas
2013-01-01
A four-dimensional deformable image registration (4D DIR) algorithm, referred to as 4D local trajectory modeling (4DLTM), is presented and applied to thoracic 4D computed tomography (4DCT) image sets. The theoretical framework on which this algorithm is built exploits the incremental continuity present in 4DCT component images to calculate a dense set of parameterized voxel trajectories through space as functions of time. The spatial accuracy of the 4DLTM algorithm is compared with an alternative registration approach in which component phase to phase (CPP) DIR is utilized to determine the full displacement between maximum inhale and exhale images. A publically available DIR reference database (http://www.dir-lab.com) is utilized for the spatial accuracy assessment. The database consists of ten 4DCT image sets and corresponding manually identified landmark points between the maximum phases. A subset of points are propagated through the expiratory 4DCT component images. Cubic polynomials were found to provide sufficient flexibility and spatial accuracy for describing the point trajectories through the expiratory phases. The resulting average spatial error between the maximum phases was 1.25 mm for the 4DLTM and 1.44 mm for the CPP. The 4DLTM method captures the long-range motion between 4DCT extremes with high spatial accuracy. PMID:20009196
A Three-Dimensional Model of the Yeast Genome
NASA Astrophysics Data System (ADS)
Noble, William; Duan, Zhi-Jun; Andronescu, Mirela; Schutz, Kevin; McIlwain, Sean; Kim, Yoo Jung; Lee, Choli; Shendure, Jay; Fields, Stanley; Blau, C. Anthony
Layered on top of information conveyed by DNA sequence and chromatin are higher order structures that encompass portions of chromosomes, entire chromosomes, and even whole genomes. Interphase chromosomes are not positioned randomly within the nucleus, but instead adopt preferred conformations. Disparate DNA elements co-localize into functionally defined aggregates or factories for transcription and DNA replication. In budding yeast, Drosophila and many other eukaryotes, chromosomes adopt a Rabl configuration, with arms extending from centromeres adjacent to the spindle pole body to telomeres that abut the nuclear envelope. Nonetheless, the topologies and spatial relationships of chromosomes remain poorly understood. Here we developed a method to globally capture intra- and inter-chromosomal interactions, and applied it to generate a map at kilobase resolution of the haploid genome of Saccharomyces cerevisiae. The map recapitulates known features of genome organization, thereby validating the method, and identifies new features. Extensive regional and higher order folding of individual chromosomes is observed. Chromosome XII exhibits a striking conformation that implicates the nucleolus as a formidable barrier to interaction between DNA sequences at either end. Inter-chromosomal contacts are anchored by centromeres and include interactions among transfer RNA genes, among origins of early DNA replication and among sites where chromosomal breakpoints occur. Finally, we constructed a three-dimensional model of the yeast genome. Our findings provide a glimpse of the interface between the form and function of a eukaryotic genome.
A Three-Dimensional Unsteady CFD Model of Compressor Stability
NASA Technical Reports Server (NTRS)
Chima, Rodrick V.
2006-01-01
A three-dimensional unsteady CFD code called CSTALL has been developed and used to investigate compressor stability. The code solved the Euler equations through the entire annulus and all blade rows. Blade row turning, losses, and deviation were modeled using body force terms which required input data at stations between blade rows. The input data was calculated using a separate Navier-Stokes turbomachinery analysis code run at one operating point near stall, and was scaled to other operating points using overall characteristic maps. No information about the stalled characteristic was used. CSTALL was run in a 2-D throughflow mode for very fast calculations of operating maps and estimation of stall points. Calculated pressure ratio characteristics for NASA stage 35 agreed well with experimental data, and results with inlet radial distortion showed the expected loss of range. CSTALL was also run in a 3-D mode to investigate inlet circumferential distortion. Calculated operating maps for stage 35 with 120 degree distortion screens showed a loss in range and pressure rise. Unsteady calculations showed rotating stall with two part-span stall cells. The paper describes the body force formulation in detail, examines the computed results, and concludes with observations about the code.
Control-oriented reduced order modeling of dipteran flapping flight
NASA Astrophysics Data System (ADS)
Faruque, Imraan
Flying insects achieve flight stabilization and control in a manner that requires only small, specialized neural structures to perform the essential components of sensing and feedback, achieving unparalleled levels of robust aerobatic flight on limited computational resources. An engineering mechanism to replicate these control strategies could provide a dramatic increase in the mobility of small scale aerial robotics, but a formal investigation has not yet yielded tools that both quantitatively and intuitively explain flapping wing flight as an "input-output" relationship. This work uses experimental and simulated measurements of insect flight to create reduced order flight dynamics models. The framework presented here creates models that are relevant for the study of control properties. The work begins with automated measurement of insect wing motions in free flight, which are then used to calculate flight forces via an empirically-derived aerodynamics model. When paired with rigid body dynamics and experimentally measured state feedback, both the bare airframe and closed loop systems may be analyzed using frequency domain system identification. Flight dynamics models describing maneuvering about hover and cruise conditions are presented for example fruit flies (Drosophila melanogaster) and blowflies (Calliphorids). The results show that biologically measured feedback paths are appropriate for flight stabilization and sexual dimorphism is only a minor factor in flight dynamics. A method of ranking kinematic control inputs to maximize maneuverability is also presented, showing that the volume of reachable configurations in state space can be dramatically increased due to appropriate choice of kinematic inputs.
An Explicit 3-Dimensional Model for Reactive Transport of Nitrogen in Tile Drained Fields
NASA Astrophysics Data System (ADS)
Hill, D. J.; Valocchi, A. J.; Hudson, R. J.
2001-12-01
Recently, there has been increased interest in nitrate contamination of groundwater in the Midwest because of its link to surface water eutrophication, especially in the Gulf of Mexico. The vast majority of this nitrate is the product of biologically mediated transformation of fertilizers containing ammonia in the vadose zone of agricultural fields. For this reason, it is imperative that mathematical models, which can serve as useful tools to evaluate both the impact of agricultural fertilizer applications and nutrient-reducing management practices, are able to specifically address transport in the vadose zone. The development of a 3-dimensional explicit numerical model to simulate the movement and transformation of nitrogen species through the subsurface on the scale of an individual farm plot will be presented. At this scale, nitrogen fate and transport is controlled by a complex coupling among hydrologic, agricultural and biogeochemical processes. The nitrogen model is a component of a larger modeling effort that focuses upon conditions typical of those found in agricultural fields in Illinois. These conditions include non-uniform, multi-dimensional, transient flow in both saturated and unsaturated zones, geometrically complex networks of tile drains, coupled surface-subsurface-tile flow, and dynamic levels of dissolved oxygen in the soil profile. The advection-dispersion-reaction equation is solved using an operator-splitting approach, which is a flexible and straightforward strategy. Advection is modeled using a total variation diminishing scheme, dispersion is modeled using an alternating direction explicit method, and reactions are modeled using rate law equations. The model's stability and accuracy will be discussed, and test problems will be presented.
Optimal spatiotemporal reduced order modeling for nonlinear dynamical systems
NASA Astrophysics Data System (ADS)
LaBryer, Allen
Proposed in this dissertation is a novel reduced order modeling (ROM) framework called optimal spatiotemporal reduced order modeling (OPSTROM) for nonlinear dynamical systems. The OPSTROM approach is a data-driven methodology for the synthesis of multiscale reduced order models (ROMs) which can be used to enhance the efficiency and reliability of under-resolved simulations for nonlinear dynamical systems. In the context of nonlinear continuum dynamics, the OPSTROM approach relies on the concept of embedding subgrid-scale models into the governing equations in order to account for the effects due to unresolved spatial and temporal scales. Traditional ROMs neglect these effects, whereas most other multiscale ROMs account for these effects in ways that are inconsistent with the underlying spatiotemporal statistical structure of the nonlinear dynamical system. The OPSTROM framework presented in this dissertation begins with a general system of partial differential equations, which are modified for an under-resolved simulation in space and time with an arbitrary discretization scheme. Basic filtering concepts are used to demonstrate the manner in which residual terms, representing subgrid-scale dynamics, arise with a coarse computational grid. Models for these residual terms are then developed by accounting for the underlying spatiotemporal statistical structure in a consistent manner. These subgrid-scale models are designed to provide closure by accounting for the dynamic interactions between spatiotemporal macroscales and microscales which are otherwise neglected in a ROM. For a given resolution, the predictions obtained with the modified system of equations are optimal (in a mean-square sense) as the subgrid-scale models are based upon principles of mean-square error minimization, conditional expectations and stochastic estimation. Methods are suggested for efficient model construction, appraisal, error measure, and implementation with a couple of well-known time
Brunner, S.; Berger, R. L.; Cohen, B. I.; Hausammann, L.; Valeo, E. J.
2014-10-01
Kinetic Vlasov simulations of one-dimensional finite amplitude Electron Plasma Waves are performed in a multi-wavelength long system. A systematic study of the most unstable linear sideband mode, in particular its growth rate γ and quasi- wavenumber δk, is carried out by scanning the amplitude and wavenumber of the initial wave. Simulation results are successfully compared against numerical and analytical solutions to the reduced model by Kruer et al. [Phys. Rev. Lett. 23, 838 (1969)] for the Trapped Particle Instability (TPI). A model recently suggested by Dodin et al. [Phys. Rev. Lett. 110, 215006 (2013)], which in addition to the TPI accounts for the so-called Negative Mass Instability because of a more detailed representation of the trapped particle dynamics, is also studied and compared with simulations.
Tanabe, Shigeo; Saitoh, Eiichi; Ohtsuka, Kei; Teranishi, Toshio; Tomita, Yutaka; Muraoka, Yoshihiro
2013-08-01
Recently, three-dimensional (3D) closed curve trajectories of markers placed at strategic body locations, called cyclograms or Lissajous-like graphs, are used for treadmill gait analysis. A simple method is presented to reduce the effect of patient positioning variation. After breaking down movement into three components (anterior-posterior, medial-lateral and superior-inferior), the time-series data and time-inverted data are serially concatenated. A fast Fourier transform (FFT) is done, and a high-pass filter (except 0 Hz) is applied to the anterior-posterior and medial-lateral components. Next an inverse FFT is executed, and the posterior half of the outcome, corresponding to time-inverted data, is deleted. The 3D closed curve is then reconstructed. Results showed that the proposed method was able to reduce the effect of patient positioning variation. Since the adjusted curve is simply a symbolized gait pattern, the method might be useful as an adjunct tool in observational gait analysis. PMID:24765518
Two-dimensional nanoplates of Bi2Te3 and Bi2Se3 with reduced thermal stability
NASA Astrophysics Data System (ADS)
Kang, Sung Min; Ha, Sung-Soo; Jung, Wan-Gil; Park, Mansoo; Song, Hyon-Seok; Kim, Bong-Joong; Hong, Jung-Il
2016-02-01
Free-standing thin nanoplates of Bi2Te3 and Bi2Se3 were synthesized by solvothermal method. It was demonstrated that the thickness of the nanoplates can be controlled by introducing a controlled amount of polyvinylpyrrolidone (PVP) in the synthesis reaction. PVP bonds to the polar basal planes of hexagonal crystal structure of Bi2Te3 and Bi2Se3, and they suppress the growth (speed) of the hexagonal crystals in the c-axis direction. Highly anisotropic growth yielded the formation of 2-dimensional nanostructures of nanoplates. The plates were examined directly with transmission electron microscopy (TEM) with in-situ heating. These crystalline nanoplates with extremely high width to thickness ratios were found to exhibit much lower thermal stability compared to the bulk counterpart or the conventional nanoparticles as represented by the reduced melting temperature. The melting temperature of a nanoplate decreased by more than 100°C compared to the melting temperature of the bulk material. While it is widely known that the meting temperature decreases for nanoparticles with reduced sizees in all three spatial dimensions, we demonstrate that the reduction in one dimension, i.e. thickness of the platelets in the present study, is effective enough to induce much greater decrease of the melting point than the decrease as observed for the case of nanoparticles.
Two-dimensional Finite Element Modeling for Modeling Tectonic Stress and Strain
NASA Technical Reports Server (NTRS)
Lyzenga, G. A.; Raefsky, A.
1983-01-01
Techniques of finite element analysis in two dimensional plane strain were applied to problems of geophysics and tectonics. More specifically, the flexibility of the finite element method was employed to address problems involving geological complexity and fault interactions. The modeling of effective anisotropy in material elastic properties proved useful in describing the deformation of faulted crustal blocks. The applications of this modeling work to problems of actual tectonics in southern California was explored. Preliminary models show encouraging agreement with measured tectonic strain in this region, and modeling work was done to gain an understanding of the stress state in a locked fault region with future seismic potential.
NASA Technical Reports Server (NTRS)
Marx, Yves P.
1991-01-01
An upwind MUSCL-type implicit scheme for the three-dimensional Navier-Stokes equations is presented and details on the implementation for three-dimensional flows of a 'diagonal' upwind implicit operator are developed. Turbulence models for separated flows are also described with an emphasis on the numerical specificities of the Johnson-King nonequilibrium model. Good predictions of separated two- and three-dimensional flows are demonstrated.
Paris basin petroleum systems revisited by two-dimensional modeling
Gaulier, J.M.; Burrus, J.; Poulet, M. ); Barlier, J. , Pau )
1991-03-01
The authors investigate the history of petroleum generation, expulsion, and migration along two E-W and N-W cross sections in the Paris basin. Source rocks, represented by Liassic marine shales (merely Hetangian-Sinemurian and Toarcian) reach the top of the oil window around 2,000 m and begin effective expulsion around 2,400 m. Reservoirs are essentially found in the subtle structures in the Dogger (carbonates) and Triassic (sandstones). These levels are normally separated from the source rocks by several hundred meters of impervious marls or shales. Regional faults are often viewed as major conduits that allow both expulsion and migration to the reservoirs. This petroleum system is seen by the use of two-dimensional modeling techniques: (1) The generation history is derived from an investigation of thermal history and kinetic modeling. They show that the present subsurface temperatures are influenced by regional convective discharge linked to the uplift of eastern and southeastern basin edges and that this cooling postdates the maturity. They also show that, in the eastern basin, the basement heat flow could have been increased since the Tertiary, at a time when Tertiary erosion had nearly frozen the maturity development. (2) The expulsion and migration are analyzed by coupling numerically the compaction history, the generation history, and the regional hydrodynamics. They show that expulsion efficiency is very much dependent on parameters not well constrained, but a sensitivity analysis confirms the prominent role of vertical faults as well as the influence of regional water flow on the distribution of accumulations.
A Three-Dimensional Multi-Mesh Lattice Boltzmann Model for Multiphysics Simulations
NASA Astrophysics Data System (ADS)
Hashemi, Amirreza; Eshraghi, Mohsen; Felicelli, Sergio
2015-11-01
The lattice Boltzmann method (LBM) is known as an attractive computational method for modeling fluid flow and, more recently, transport phenomena. As any numerical method, the computational cost of LBM simulations depends on the density of the computational grids. The cost of simulations can become enormous when multiple equations are solved in three dimensions. In this work, the development of a multi-block multi-grid LBM model is discussed for three-dimensional (3D) multiphysics simulations. In a system of multiple coupled equations with different length scales, a multi-block mesh with different grids for each model would enhance the computational efficiency and stability of the model. Embedded-type grids facilitate the transfer of information between lattices while allowing larger time steps. In addition, a non-uniform mesh is considered within each mode that allows mesh refinement within each physical model when required. The multi-mesh method was developed to solve for transport phenomena including fluid flow, mass and heat transfer. The huge memory demands of LBM simulations in 3D was significantly reduced using this scheme. Moreover, by reducing the number of lattice points, cost communication in parallel processing was largely decreased.
NASA Astrophysics Data System (ADS)
Ushijima, Timothy T.; Yeh, William W.-G.
2013-10-01
An optimal experimental design algorithm is developed to select locations for a network of observation wells that provide maximum information about unknown groundwater pumping in a confined, anisotropic aquifer. The design uses a maximal information criterion that chooses, among competing designs, the design that maximizes the sum of squared sensitivities while conforming to specified design constraints. The formulated optimization problem is non-convex and contains integer variables necessitating a combinatorial search. Given a realistic large-scale model, the size of the combinatorial search required can make the problem difficult, if not impossible, to solve using traditional mathematical programming techniques. Genetic algorithms (GAs) can be used to perform the global search; however, because a GA requires a large number of calls to a groundwater model, the formulated optimization problem still may be infeasible to solve. As a result, proper orthogonal decomposition (POD) is applied to the groundwater model to reduce its dimensionality. Then, the information matrix in the full model space can be searched without solving the full model. Results from a small-scale test case show identical optimal solutions among the GA, integer programming, and exhaustive search methods. This demonstrates the GA's ability to determine the optimal solution. In addition, the results show that a GA with POD model reduction is several orders of magnitude faster in finding the optimal solution than a GA using the full model. The proposed experimental design algorithm is applied to a realistic, two-dimensional, large-scale groundwater problem. The GA converged to a solution for this large-scale problem.
A two-state hysteresis model from high-dimensional friction.
Biswas, Saurabh; Chatterjee, Anindya
2015-07-01
In prior work (Biswas & Chatterjee 2014 Proc. R. Soc. A 470, 20130817 (doi:10.1098/rspa.2013.0817)), we developed a six-state hysteresis model from a high-dimensional frictional system. Here, we use a more intuitively appealing frictional system that resembles one studied earlier by Iwan. The basis functions now have simple analytical description. The number of states required decreases further, from six to the theoretical minimum of two. The number of fitted parameters is reduced by an order of magnitude, to just six. An explicit and faster numerical solution method is developed. Parameter fitting to match different specified hysteresis loops is demonstrated. In summary, a new two-state model of hysteresis is presented that is ready for practical implementation. Essential Matlab code is provided. PMID:26587279
A two-state hysteresis model from high-dimensional friction
Biswas, Saurabh; Chatterjee, Anindya
2015-01-01
In prior work (Biswas & Chatterjee 2014 Proc. R. Soc. A 470, 20130817 (doi:10.1098/rspa.2013.0817)), we developed a six-state hysteresis model from a high-dimensional frictional system. Here, we use a more intuitively appealing frictional system that resembles one studied earlier by Iwan. The basis functions now have simple analytical description. The number of states required decreases further, from six to the theoretical minimum of two. The number of fitted parameters is reduced by an order of magnitude, to just six. An explicit and faster numerical solution method is developed. Parameter fitting to match different specified hysteresis loops is demonstrated. In summary, a new two-state model of hysteresis is presented that is ready for practical implementation. Essential Matlab code is provided. PMID:26587279
Bayesian Inference of High-Dimensional Dynamical Ocean Models
NASA Astrophysics Data System (ADS)
Lin, J.; Lermusiaux, P. F. J.; Lolla, S. V. T.; Gupta, A.; Haley, P. J., Jr.
2015-12-01
This presentation addresses a holistic set of challenges in high-dimension ocean Bayesian nonlinear estimation: i) predict the probability distribution functions (pdfs) of large nonlinear dynamical systems using stochastic partial differential equations (PDEs); ii) assimilate data using Bayes' law with these pdfs; iii) predict the future data that optimally reduce uncertainties; and (iv) rank the known and learn the new model formulations themselves. Overall, we allow the joint inference of the state, equations, geometry, boundary conditions and initial conditions of dynamical models. Examples are provided for time-dependent fluid and ocean flows, including cavity, double-gyre and Strait flows with jets and eddies. The Bayesian model inference, based on limited observations, is illustrated first by the estimation of obstacle shapes and positions in fluid flows. Next, the Bayesian inference of biogeochemical reaction equations and of their states and parameters is presented, illustrating how PDE-based machine learning can rigorously guide the selection and discovery of complex ecosystem models. Finally, the inference of multiscale bottom gravity current dynamics is illustrated, motivated in part by classic overflows and dense water formation sites and their relevance to climate monitoring and dynamics. This is joint work with our MSEAS group at MIT.
Curcumin reduces injury progression in a rat comb burn model.
Singer, Adam J; Taira, Breena R; Lin, Fubao; Lim, Taeho; Anderson, Ryon; McClain, Steve A; Clark, Richard A F
2011-01-01
The oriental spice curcumin has anti-inflammatory and antioxidant effects. When given orally before injury, curcumin reduces burn progression in a rat comb burn model. The authors hypothesized that intravenous administration of curcumin after injury would reduce burn progression and that its effects are mediated through iron chelation. Two comb burns were created on the dorsum of Sprague-Dawley rats (weight, 300 g) using a brass comb with four rectangular prongs preheated in boiling water and applied for 30 seconds resulting in four rectangular 10 × 20 mm full-thickness burns separated by three 5 × 20 mm unburned interspaces (zone of ischemia). Animals were randomized to receive one of four doses of crude curcumin or one of six doses of purified curcumin intravenously 1 and 24 hours after injury. Another set of animals were randomized to deferoxamine or control vehicle. Wounds were observed at 7 days after injury for visual evidence of necrosis in the unburned interspaces. Full-thickness biopsies from the interspaces were evaluated with Hematoxylin and Eosin staining 7 days after injury for evidence of necrosis. The percentage of unburned interspaces undergoing necrosis at 1 week by purified curcumin doses was 0 μg/kg, 74%; 0.3 μg/kg, 58%; 1 μg/kg, 53%; 3 μg/kg, 37%; 10 μg/kg, 63%; 30 μg/kg, 53%; and 100 μg/kg, 26%. The differences among the groups were significant (P = .03). When compared with controls, the 1 and 3 μg/kg curcumin treatment groups had significantly less progression of interspaces to necrosis (P = .04 and .002) as did the 30 and 100 μg/kg treatment groups (P = .03 and <.001). Deferoxamine did not reduce burn progression. When administered intravenously 1 and 24 hours after injury, both crude and purified curcumin reduce the percentage of unburned interspaces that undergo necrosis in a rat hot comb burn model. The effects of purified curcumin appear to be bimodal, suggesting more than one mechanism of action. The effects of curcumin do not
Drummond, Coyne G; Nickerson, Cheryl A; Coyne, Carolyn B
2016-01-01
Despite serving as the primary entry portal for coxsackievirus B (CVB), little is known about CVB infection of the intestinal epithelium, owing at least in part to the lack of suitable in vivo models and the inability of cultured cells to recapitulate the complexity and structure associated with the gastrointestinal (GI) tract. Here, we report on the development of a three-dimensional (3-D) organotypic cell culture model of Caco-2 cells to model CVB infection of the gastrointestinal epithelium. We show that Caco-2 cells grown in 3-D using the rotating wall vessel (RWV) bioreactor recapitulate many of the properties of the intestinal epithelium, including the formation of well-developed tight junctions, apical-basolateral polarity, brush borders, and multicellular complexity. In addition, transcriptome analyses using transcriptome sequencing (RNA-Seq) revealed the induction of a number of genes associated with intestinal epithelial differentiation and/or intestinal processes in vivo when Caco-2 cells were cultured in 3-D. Applying this model to CVB infection, we found that although the levels of intracellular virus production were similar in two-dimensional (2-D) and 3-D Caco-2 cell cultures, the release of infectious CVB was enhanced in 3-D cultures at early stages of infection. Unlike CVB, the replication of poliovirus (PV) was significantly reduced in 3-D Caco-2 cell cultures. Collectively, our studies show that Caco-2 cells grown in 3-D using the RWV bioreactor provide a cell culture model that structurally and transcriptionally represents key aspects of cells in the human GI tract and can thus be used to expand our understanding of enterovirus-host interactions in intestinal epithelial cells. IMPORTANCE Coxsackievirus B (CVB), a member of the enterovirus family of RNA viruses, is associated with meningitis, pericarditis, diabetes, dilated cardiomyopathy, and myocarditis, among other pathologies. CVB is transmitted via the fecal-oral route and encounters the
Drummond, Coyne G.
2015-01-01
ABSTRACT Despite serving as the primary entry portal for coxsackievirus B (CVB), little is known about CVB infection of the intestinal epithelium, owing at least in part to the lack of suitable in vivo models and the inability of cultured cells to recapitulate the complexity and structure associated with the gastrointestinal (GI) tract. Here, we report on the development of a three-dimensional (3-D) organotypic cell culture model of Caco-2 cells to model CVB infection of the gastrointestinal epithelium. We show that Caco-2 cells grown in 3-D using the rotating wall vessel (RWV) bioreactor recapitulate many of the properties of the intestinal epithelium, including the formation of well-developed tight junctions, apical-basolateral polarity, brush borders, and multicellular complexity. In addition, transcriptome analyses using transcriptome sequencing (RNA-Seq) revealed the induction of a number of genes associated with intestinal epithelial differentiation and/or intestinal processes in vivo when Caco-2 cells were cultured in 3-D. Applying this model to CVB infection, we found that although the levels of intracellular virus production were similar in two-dimensional (2-D) and 3-D Caco-2 cell cultures, the release of infectious CVB was enhanced in 3-D cultures at early stages of infection. Unlike CVB, the replication of poliovirus (PV) was significantly reduced in 3-D Caco-2 cell cultures. Collectively, our studies show that Caco-2 cells grown in 3-D using the RWV bioreactor provide a cell culture model that structurally and transcriptionally represents key aspects of cells in the human GI tract and can thus be used to expand our understanding of enterovirus-host interactions in intestinal epithelial cells. IMPORTANCE Coxsackievirus B (CVB), a member of the enterovirus family of RNA viruses, is associated with meningitis, pericarditis, diabetes, dilated cardiomyopathy, and myocarditis, among other pathologies. CVB is transmitted via the fecal-oral route and
Möbius transformational high dimensional model representation on multi-way arrays
NASA Astrophysics Data System (ADS)
Özay, Evrim Korkmaz
2012-09-01
Transformational High Dimensional Model Representation has been used for continous structures with different transformations before. This work is inventive because not only for the transformation type but also its usage. Möbius Transformational High Dimensional Model Representation has been used at multi-way arrays, by using truncation approximant and inverse transformation an approximation has been obtained for original multi-way array.
Reduced-order modeling of high-speed jets controlled by arc filament plasma actuators
NASA Astrophysics Data System (ADS)
Sinha, Aniruddha; Serrani, Andrea; Samimy, Mo
2013-02-01
Arc filament plasma actuators applied to high-speed and high Reynolds number jets have demonstrated significant mixing enhancement when operated near the jet column mode (JCM) frequency. A feedback-oriented reduced-order model is developed for this flow from experimental data. The existent toolkit of stochastic estimation, proper orthogonal decomposition, and Galerkin projection is adapted to yield a 35-dimensional model for the unforced jet. Explicit inclusion of a "shift mode" stabilizes the model. The short-term predictive capability of instantaneous flow fields is found to degrade beyond a single flow time step, but this horizon may be adequate for feedback control. Statistical results from long-term simulations agree well with experimental observations. The model of the unforced jet is augmented to incorporate the effects of plasma actuation. Periodic forcing is modeled as a deterministic pressure wave specified on the inflow boundary of the modeling domain. Simulations of the forced model capture the nonlinear response that leads to optimal mixing enhancement in a small range of frequencies near the JCM.
NASA Astrophysics Data System (ADS)
Posnansky, Oleg
2016-09-01
The measuring of viscoelastic response is widely used for revealing information about soft matter and biological tissue noninvasively. This information encodes intrinsic dynamic correlations and depends on relations between macroscopic viscoelasticity and structure at the mesoscopic scale. Here we show numerically that the frequency dependent dynamical shear moduli distinguish between the mesoscopic architectural complexities and sensitive to the Euclidean dimensionality. Our approach enables the explanation of two- and three-dimensional viscoelastic experiments by objectively choosing and modeling the most relevant architectural features such as the concentration of compounds and intra-model hierarchical characteristics of physical parameters. Current work provides a link between the macroscopical effective viscoelastic properties to viscoelastic constants and network geometry on the mesoscale. Besides of this we also pay attention to the analytical properties of generalized susceptibility function of considered constitutive model accounting principles of causality.
NASA Astrophysics Data System (ADS)
Harvazinski, Matthew Evan
observed in experiments. All fuel rich simulations used a single step global reaction for the chemical kinetic model. A fuel lean operating condition is also studied and has a lower level of instability. The two-dimensional results are unable to provide good agreement with experimental results unless a more expensive four-step chemical kinetic model is used. The three-dimensional simulation is able to predict the harmonic behavior but fails to capture the amplitude of the instability observed in the companion experiment, instead predicting lower amplitude oscillations. A detailed analysis of the three-dimensional results on a single cycle shows that the periodic heat release commonly associated with combustion instability can be interpreted to be a result of the time lag between the instant the fuel is injected and when it is burned. The time lag is due to two mechanisms. First, methane present near the backstep can become trapped and transported inside shed vortices to the point of combustion. The second aspect of the time lag arises due to the interaction of the fuel with upstream-running pressure waves. As the wave moves past the injection point the flow is temporarily disrupted, reducing the fuel flow into the combustor. A comparison between the fuel lean and fuel rich cases shows several differences. Whereas both cases can produce instability, the fuel-rich case is measurably more unstable. Using the tools developed differences in the location of the damping, and driving regions are evident. By moving the peak driving area upstream of the damping region the level of instability is lower in the fuel lean case. The location of the mean heat release is also important; locating the mean heat release adjacent to the vortex impingement point a higher level of instability is observed for the fuel rich case. This research shows that DES instability modeling has the ability to be a valuable tool in the study of combustion instability. The lower grid size requirement makes the
Three-dimensional spheroid cell model of in vitro adipocyte inflammation.
Turner, Paul A; Tang, Yi; Weiss, Stephen J; Janorkar, Amol V
2015-06-01
To improve treatment of obesity, a contributing factor to multiple systemic and metabolic diseases, a better understanding of metabolic state and environmental stress at the cellular level is essential. This work presents development of a three-dimensional (3D) in vitro model of adipose tissue displaying induced lipid accumulation as a function of fatty acid supplementation that, subsequently, investigates cellular responses to a pro-inflammatory stimulus, thereby recapitulating key stages of obesity progression. Three-dimensional spheroid organization of adipose cells was induced by culturing 3T3-L1 mouse preadipocytes on an elastin-like polypeptide-polyethyleneimine (ELP-PEI)-coated surface. Results indicate a more differentiated phenotype in 3D spheroid cultures relative to two-dimensional (2D) monolayer analogues based on triglyceride accumulation, CD36 and CD40 protein expression, and peroxisome proliferator-activated receptor-γ (PPAR-γ) and adiponectin mRNA expression. The 3T3-L1 adipocyte spheroid model was then used to test the effects of a pro-inflammatory microenvironment, namely maturation in the presence of elevated fatty acid levels followed by acute exposure to tumor necrosis factor alpha (TNF-α). Under these conditions, we demonstrate that metabolic function was reduced across all cultures exposed to TNF-α, especially so when pre-exposed to linoleic acid. Further, in response to TNF-α, enhanced lipolysis, monitored as increased extracellular glycerol and fatty acids levels, was observed in adipocytes cultured in the presence of exogenous fatty acids. Taken together, our 3D spheroid model showed enhanced adipogenic differentiation and presents a platform for elucidating the key phenotypic responses that occur in pro-inflammatory microenvironments that characterize obesogenic states. PMID:25781458
Determinations of from inclusive semileptonic decays with reduced model dependence.
Aubert, B; Barate, R; Boutigny, D; Couderc, F; Karyotakis, Y; Lees, J P; Poireau, V; Tisserand, V; Zghiche, A; Grauges, E; Palano, A; Pappagallo, M; Pompili, A; Chen, J C; Qi, N D; Rong, G; Wang, P; Zhu, Y S; Eigen, G; Ofte, I; Stugu, B; Abrams, G S; Battaglia, M; Best, D S; Brown, D N; Button-Shafer, J; Cahn, R N; Charles, E; Day, C T; Gill, M S; Gritsan, A V; Groysman, Y; Jacobsen, R G; Kadel, R W; Kadyk, J A; Kerth, L T; Kolomensky, Yu G; Kukartsev, G; Lynch, G; Mir, L M; Oddone, P J; Orimoto, T J; Pripstein, M; Roe, N A; Ronan, M T; Wenzel, W A; Barrett, M; Ford, K E; Harrison, T J; Hart, A J; Hawkes, C M; Morgan, S E; Watson, A T; Fritsch, M; Goetzen, K; Held, T; Koch, H; Lewandowski, B; Pelizaeus, M; Peters, K; Schroeder, T; Steinke, M; Boyd, J T; Burke, J P; Cottingham, W N; Walker, D; Cuhadar-Donszelmann, T; Fulsom, B G; Hearty, C; Knecht, N S; Mattison, T S; McKenna, J A; Khan, A; Kyberd, P; Saleem, M; Teodorescu, L; Blinov, A E; Blinov, V E; Bukin, A D; Druzhinin, V P; Golubev, V B; Kravchenko, E A; Onuchin, A P; Serednyakov, S I; Skovpen, Yu I; Solodov, E P; Yushkov, A N; Bondioli, M; Bruinsma, M; Chao, M; Curry, S; Eschrich, I; Kirkby, D; Lankford, A J; Lund, P; Mandelkern, M; Mommsen, R K; Roethel, W; Stoker, D P; Abachi, S; Buchanan, C; Foulkes, S D; Gary, J W; Long, O; Shen, B C; Wang, K; Zhang, L; del Re, D; Hadavand, H K; Hill, E J; MacFarlane, D B; Paar, H P; Rahatlou, S; Sharma, V; Berryhill, J W; Campagnari, C; Cunha, A; Dahmes, B; Hong, T M; Mazur, M A; Richman, J D; Beck, T W; Eisner, A M; Flacco, C J; Heusch, C A; Kroseberg, J; Lockman, W S; Nesom, G; Schalk, T; Schumm, B A; Seiden, A; Spradlin, P; Williams, D C; Wilson, M G; Albert, J; Chen, E; Dubois-Felsmann, G P; Dvoretskii, A; Hitlin, D G; Minamora, J S; Narsky, I; Piatenko, T; Porter, F C; Ryd, A; Samuel, A; Andreassen, R; Mancinelli, G; Meadows, B T; Sokoloff, M D; Blanc, F; Bloom, P C; Chen, S; Ford, W T; Hirschauer, J F; Kreisel, A; Nauenberg, U; Olivas, A; Ruddick, W O; Smith, J G; Ulmer, K A; Wagner, S R; Zhang, J; Chen, A; Eckhart, E A; Soffer, A; Toki, W H; Wilson, R J; Winklmeier, F; Zeng, Q; Altenburg, D D; Feltresi, E; Hauke, A; Spaan, B; Brandt, T; Dickopp, M; Klose, V; Lacker, H M; Nogowski, R; Otto, S; Petzold, A; Schubert, J; Schubert, K R; Schwierz, R; Sundermann, J E; Bernard, D; Bonneaud, G R; Grenier, P; Latour, E; Schrenk, S; Thiebaux, Ch; Vasileiadis, G; Verderi, M; Bard, D J; Clark, P J; Gradl, W; Muheim, F; Playfer, S; Xie, Y; Andreotti, M; Bettoni, D; Bozzi, C; Calabrese, R; Cibinetto, G; Luppi, E; Negrini, M; Piemontese, L; Anulli, F; Baldini-Ferroli, R; Calcaterra, A; de Sangro, R; Finocchiaro, G; Patteri, P; Peruzzi, I M; Piccolo, M; Zallo, A; Buzzo, A; Capra, R; Contri, R; Lo Vetere, M; Macri, M M; Monge, M R; Passaggio, S; Patrignani, C; Robutti, E; Santroni, A; Tosi, S; Brandenburg, G; Chaisanguanthum, K S; Morii, M; Wu, J; Dubitzky, R S; Langenegger, U; Marks, J; Schenk, S; Uwer, U; Bhimji, W; Bowerman, D A; Dauncey, P D; Egede, U; Flack, R L; Gaillard, J R; Nash, J A; Nikolich, M B; Vazquez, W Panduro; Chai, X; Charles, M J; Mader, W F; Mallik, U; Ziegler, V; Cochran, J; Crawley, H B; Dong, L; Eyges, V; Meyer, W T; Prell, S; Rosenberg, E I; Rubin, A E; Yi, J I; Schott, G; Arnaud, N; Davier, M; Giroux, X; Grosdidier, G; Höcker, A; Diberder, F Le; Lepeltier, V; Lutz, A M; Oyanguren, A; Petersen, T C; Pruvot, S; Rodier, S; Roudeau, P; Schune, M H; Stocchi, A; Wang, W F; Wormser, G; Cheng, C H; Lange, D J; Wright, D M; Bevan, A J; Chavez, C A; Forster, I J; Fry, J R; Gabathuler, E; Gamet, R; George, K A; Hutchcroft, D E; Parry, R J; Payne, D J; Schofield, K C; Touramanis, C; Di Lodovico, F; Menges, W; Sacco, R; Brown, C L; Cowan, G; Flaecher, H U; Green, M G; Hopkins, D A; Jackson, P S; McMahon, T R; Ricciardi, S; Salvatore, F; Brown, D N; Davis, C L; Allison, J; Barlow, N R; Barlow, R J; Chia, Y M; Edgar, C L; Kelly, M P; Lafferty, G D; Naisbit, M T; Williams, J C; Chen, C; Hulsbergen, W D; Jawahery, A; Kovalskyi, D; Lae, C K; Roberts, D A; Simi, G; Blaylock, G; Dallapiccola, C; Hertzbach, S S; Kofler, R; Li, X; Moore, T B; Saremi, S; Staengle, H; Willocq, S Y; Cowan, R; Koeneke, K; Sciolla, G; Sekula, S J; Spitznagel, M; Taylor, F; Yamamoto, R K; Kim, H; Patel, P M; Robertson, S H; Lazzaro, A; Lombardo, V; Palombo, F F; Bauer, J M; Cremaldi, L; Eschenburg, V; Godang, R; Kroeger, R; Reidy, J; Sanders, D A; Summers, D J; Zhao, H W; Brunet, S; Côté, D; Taras, P; Viaud, F B; Nicholson, H; Cavallo, N; De Nardo, G; Fabozzi, F; Gatto, C; Lista, L; Monorchio, D; Paolucci, P; Piccolo, D; Sciacca, C; Baak, M; Bulten, H; Raven, G; Snoek, H L; Wilden, L; Jessop, C P; LoSecco, J M; Allmendinger, T; Benelli, G; Gan, K K; Honscheid, K; Hufnagel, D; Jackson, P D; Kagan, H; Kass, R; Pulliam, T; Rahimi, A M; Ter-Antonyan, R; Wong, Q K; Blount, N L; Brau, J; Frey, R; Igonkina, O; Lu, M; Potter, C T; Rahmat, R; Sinev, N B; Strom, D; Strube, J; Torrence, E; Galeazzi, F; Margoni, M; Morandin, M; Posocco, M; Rotondo, M; Simonetto, F; Stroili, R; Voci, C; Benayoun, M; Chauveau, J; David, P; Del Buono, L; de la Vaissière, Ch; Hamon, O; Hartfiel, B L; John, M J J; Leruste, Ph; Malclès, J; Ocariz, J; Roos, L; Therin, G; Behera, P K; Gladney, L; Panetta, J; Biasini, M; Covarelli, R; Pacetti, S; Pioppi, M; Angelini, C; Batignani, G; Bettarini, S; Bucci, F; Calderini, G; Carpinelli, M; Cenci, R; Forti, F; Giorgi, M A; Lusiani, A; Marchiori, G; Morganti, M; Neri, N; Paoloni, E; Rama, M; Rizzo, G; Walsh, J; Haire, M; Judd, D; Wagoner, D E; Biesiada, J; Danielson, N; Elmer, P; Lau, Y P; Lu, C; Olsen, J; Smith, A J S; Telnov, A V; Bellini, F; Cavoto, G; D'Orazio, A; Di Marco, E; Faccini, R; Ferrarotto, F; Ferroni, F; Gaspero, M; Gioi, L Li; Mazzoni, M A; Morganti, S; Piredda, G; Polci, F; Tehrani, F Safai; Voena, C; Schröder, H; Waldi, R; Adye, T; De Groot, N; Franek, B; Gopal, G P; Olaiya, E O; Wilson, F F; Aleksan, R; Emery, S; Gaidot, A; Ganzhur, S F; Graziani, G; de Monchenault, G Hamel; Kozanecki, W; Legendre, M; Mayer, B; Vasseur, G; Yèche, Ch; Zito, M; Purohit, M V; Weidemann, A W; Wilson, J R; Abe, T; Allen, M T; Aston, D; Bartoldus, R; Berger, N; Boyarski, A M; Buchmueller, O L; Claus, R; Coleman, J P; Convery, M R; Cristinziani, M; Dingfelder, J C; Dong, D; Dorfan, J; Dujmic, D; Dunwoodie, W; Fan, S; Field, R C; Glanzman, T; Gowdy, S J; Hadig, T; Halyo, V; Hast, C; Hryn'ova, T; Innes, W R; Kelsey, M H; Kim, P; Kocian, M L; Leith, D W G S; Libby, J; Luitz, S; Luth, V; Lynch, H L; Marsiske, H; Messner, R; Muller, D R; O'Grady, C P; Ozcan, V E; Perazzo, A; Perl, M; Ratcliff, B N; Roodman, A; Salnikov, A A; Schindler, R H; Schwiening, J; Snyder, A; Stelzer, J; Su, D; Sullivan, M K; Suzuki, K; Swain, S K; Thompson, J M; Va'vra, J; van Bakel, N; Weaver, M; Weinstein, A J R; Wisniewski, W J; Wittgen, M; Wright, D H; Yarritu, A K; Yi, K; Young, C C; Burchat, P R; Edwards, A J; Majewski, S A; Petersen, B A; Roat, C; Ahmed, S; Alam, M S; Bula, R; Ernst, J A; Pan, B; Saeed, M A; Wappler, F R; Zain, S B; Bugg, W; Krishnamurthy, M; Spanier, S M; Eckmann, R; Ritchie, J L; Satpathy, A; Schwitters, R F; Izen, J M; Kitayama, I; Lou, X C; Ye, S; Bianchi, F; Bona, M; Gallo, F; Gamba, D; Bomben, M; Bosisio, L; Cartaro, C; Cossutti, F; Ricca, G Della; Dittongo, S; Grancagnolo, S; Lanceri, L; Vitale, L; Azzolini, V; Martinez-Vidal, F; Panvini, R S; Banerjee, Sw; Bhuyan, B; Brown, C M; Fortin, D; Hamano, K; Kowalewski, R; Nugent, I M; Roney, J M; Sobie, R J; Back, J J; Harrison, P F; Latham, T E; Mohanty, G B; Band, H R; Chen, X; Cheng, B; Dasu, S; Datta, M; Eichenbaum, A M; Flood, K T; Graham, M T; Hollar, J J; Johnson, J R; Kutter, P E; Li, H; Liu, R; Mellado, B; Mihalyi, A; Mohapatra, A K; Pan, Y; Pierini, M; Prepost, R; Tan, P; Wu, S L; Yu, Z; Neal, H
2006-06-01
We report two novel determinations of /|Vub/ with reduced model dependence, based on measurements of the mass distribution of the hadronic system in semileptonic B decays. Events are selected by fully reconstructing the decay of one B meson and identifying a charged lepton from the decay of the other B meson from Upsilon(4S)-->BB events. In one approach, we combine the inclusive B-->Xulambdav rate, integrated up to a maximum hadronic mass mX<1.67 GeV/c2, with a measurement of the inclusive B-->Xsgamma photon energy spectrum. We obtain /Vub/=(4.43+/-0.38stat+/-0.25syst+/-0.29theo) x 10-3. In another approach we measure the total B-->Xulambdav rate over the full phase space and find /Vub/=(3.84+/-0.70stat+/-0.30syst+/-0.10theo) x 10-3. PMID:16803301
Computational design of patterned interfaces using reduced order models
Vattré, A. J.; Abdolrahim, N.; Kolluri, K.; Demkowicz, M. J.
2014-01-01
Patterning is a familiar approach for imparting novel functionalities to free surfaces. We extend the patterning paradigm to interfaces between crystalline solids. Many interfaces have non-uniform internal structures comprised of misfit dislocations, which in turn govern interface properties. We develop and validate a computational strategy for designing interfaces with controlled misfit dislocation patterns by tailoring interface crystallography and composition. Our approach relies on a novel method for predicting the internal structure of interfaces: rather than obtaining it from resource-intensive atomistic simulations, we compute it using an efficient reduced order model based on anisotropic elasticity theory. Moreover, our strategy incorporates interface synthesis as a constraint on the design process. As an illustration, we apply our approach to the design of interfaces with rapid, 1-D point defect diffusion. Patterned interfaces may be integrated into the microstructure of composite materials, markedly improving performance. PMID:25169868