Sample records for riparian tree species

  1. Comparison of leaf-on and leaf-off ALS data for mapping riparian tree species

    NASA Astrophysics Data System (ADS)

    Laslier, Marianne; Ba, Antoine; Hubert-Moy, Laurence; Dufour, Simon

    2017-10-01

    Forest species composition is a fundamental indicator of forest study and management. However, describing forest species composition at large scales and of highly diverse populations remains an issue for which remote sensing can provide significant contribution, in particular, Airborne Laser Scanning (ALS) data. Riparian corridors are good examples of highly valuable ecosystems, with high species richness and large surface areas that can be time consuming and expensive to monitor with in situ measurements. Remote sensing could be useful to study them, but few studies have focused on monitoring riparian tree species using ALS data. This study aimed to determine which metrics derived from ALS data are best suited to identify and map riparian tree species. We acquired very high density leaf-on and leaf-off ALS data along the Sélune River (France). In addition, we inventoried eight main riparian deciduous tree species along the study site. After manual segmentation of the inventoried trees, we extracted 68 morphological and structural metrics from both leaf-on and leaf-off ALS point clouds. Some of these metrics were then selected using Sequential Forward Selection (SFS) algorithm. Support Vector Machine (SVM) classification results showed good accuracy with 7 metrics (0.77). Both leaf-on and leafoff metrics were kept as important metrics for distinguishing tree species. Results demonstrate the ability of 3D information derived from high density ALS data to identify riparian tree species using external and internal structural metrics. They also highlight the complementarity of leaf-on and leaf-off Lidar data for distinguishing riparian tree species.

  2. Riparian Ficus Tree Communities: The Distribution and Abundance of Riparian Fig Trees in Northern Thailand

    PubMed Central

    Pothasin, Pornwiwan; Compton, Stephen G.; Wangpakapattanawong, Prasit

    2014-01-01

    Fig trees (Ficus) are often ecologically significant keystone species because they sustain populations of the many seed-dispersing animals that feed on their fruits. They are prominent components of riparian zones where they may also contribute to bank stability as well as supporting associated animals. The diversity and distributions of riparian fig trees in deciduous and evergreen forests in Chiang Mai Province, Northern Thailand were investigated in 2010–2012. To record the diversity and abundance of riparian fig trees, we (1) calculated stem density, species richness, and diversity indices in 20×50 m randomly selected quadrats along four streams and (2) measured the distances of individual trees from four streams to determine if species exhibit distinct distribution patterns within riparian zones. A total of 1169 individuals (from c. 4 ha) were recorded in the quadrats, representing 33 Ficus species (13 monoecious and 20 dioecious) from six sub-genera and about 70% of all the species recorded from northern Thailand. All 33 species had at least some stems in close proximity to the streams, but they varied in their typical proximity, with F. squamosa Roxb. and F. ischnopoda Miq the most strictly stream-side species. The riparian forests in Northern Thailand support a rich diversity and high density of Ficus species and our results emphasise the importance of fig tree within the broader priorities of riparian area conservation. Plans to maintain or restore properly functioning riparian forests need to take into account their significance. PMID:25310189

  3. Decay fungi of riparian trees in the Southwestern U.S.

    Treesearch

    Jessie A. Glaeser; Kevin T. Smith

    2013-01-01

    Most of the tree species that characterize riparian woodlands are early or facultative seral species including Fremont cottonwood (Populus fremontii), Arizona alder (Alnus oblongifolia), Arizona sycamore (Platanus wrightii), Modesto ash (Fraxinus velutina), boxelder (Acer negundo...

  4. Tree mortality in response to typhoon-induced floods and mudslides is determined by tree species, size, and position in a riparian Formosan gum forest in subtropical Taiwan

    PubMed Central

    Tzeng, Hsy-Yu; Wang, Wei; Tseng, Yen-Hsueh; Chiu, Ching-An; Kuo, Chu-Chia

    2018-01-01

    Global warming-induced extreme climatic changes have increased the frequency of severe typhoons bringing heavy rains; this has considerably affected the stability of the forest ecosystems. Since the Taiwan 921 earthquake occurred in 21 September 1999, the mountain geology of the Island of Taiwan has become unstable and typhoon-induced floods and mudslides have changed the topography and geomorphology of the area; this has further affected the stability and functions of the riparian ecosystem. In this study, the vegetation of the unique Aowanda Formosan gum forest in Central Taiwan was monitored for 3 years after the occurrence of floods and mudslides during 2009–2011. Tree growth and survival, effects of floods and mudslides, and factors influencing tree survival were investigated. We hypothesized that (1) the effects of floods on the survival are significantly different for each tree species; (2) tree diameter at breast height (DBH) affects tree survival–i.e., the larger the DBH, the higher the survival rate; and (3) the relative position of trees affects tree survival after disturbances by floods and mudslides–the farther trees are from the river, the higher is their survival rate. Our results showed that after floods and mudslides, the lifespans of the major tree species varied significantly. Liquidambar formosana displayed the highest flood tolerance, and the trunks of Lagerstoemia subcostata began rooting after disturbances. Multiple regression analysis indicated that factors such as species, DBH, distance from sampled tree to the above boundary of sample plot (far from the riverbank), and distance from the upstream of the river affected the lifespans of trees; the three factors affected each tree species to different degrees. Furthermore, we showed that insect infestation had a critical role in determining tree survival rate. Our 3-year monitoring investigation revealed that severe typhoon-induced floods and mudslides disturbed the riparian vegetation

  5. Tree mortality in response to typhoon-induced floods and mudslides is determined by tree species, size, and position in a riparian Formosan gum forest in subtropical Taiwan.

    PubMed

    Tzeng, Hsy-Yu; Wang, Wei; Tseng, Yen-Hsueh; Chiu, Ching-An; Kuo, Chu-Chia; Tsai, Shang-Te

    2018-01-01

    Global warming-induced extreme climatic changes have increased the frequency of severe typhoons bringing heavy rains; this has considerably affected the stability of the forest ecosystems. Since the Taiwan 921 earthquake occurred in 21 September 1999, the mountain geology of the Island of Taiwan has become unstable and typhoon-induced floods and mudslides have changed the topography and geomorphology of the area; this has further affected the stability and functions of the riparian ecosystem. In this study, the vegetation of the unique Aowanda Formosan gum forest in Central Taiwan was monitored for 3 years after the occurrence of floods and mudslides during 2009-2011. Tree growth and survival, effects of floods and mudslides, and factors influencing tree survival were investigated. We hypothesized that (1) the effects of floods on the survival are significantly different for each tree species; (2) tree diameter at breast height (DBH) affects tree survival-i.e., the larger the DBH, the higher the survival rate; and (3) the relative position of trees affects tree survival after disturbances by floods and mudslides-the farther trees are from the river, the higher is their survival rate. Our results showed that after floods and mudslides, the lifespans of the major tree species varied significantly. Liquidambar formosana displayed the highest flood tolerance, and the trunks of Lagerstoemia subcostata began rooting after disturbances. Multiple regression analysis indicated that factors such as species, DBH, distance from sampled tree to the above boundary of sample plot (far from the riverbank), and distance from the upstream of the river affected the lifespans of trees; the three factors affected each tree species to different degrees. Furthermore, we showed that insect infestation had a critical role in determining tree survival rate. Our 3-year monitoring investigation revealed that severe typhoon-induced floods and mudslides disturbed the riparian vegetation in the

  6. Gender-specific patterns of aboveground allocation, canopy conductance and water use in a dominant riparian tree species: Acer negundo.

    PubMed

    Hultine, K R; Bush, S E; West, A G; Burtch, K G; Pataki, D E; Ehleringer, J R

    2008-09-01

    Acer negundo Sarg. (box elder) is a dioecious tree species that dominates riparian systems at mid elevations throughout the southwest and Intermountain West of the United States. Previous studies have shown that female A. negundo trees occur at higher frequencies along stream margins, whereas males occur at higher frequencies in drier microsites. To better understand the adaptive significance of sex ratio biases and their impact on the ecohydrology of riparian ecosystems, we examined whole-plant water relations and hydraulic properties of mature male and female A. negundo trees occurring within 1 m of a perennial stream channel. We hypothesized that (1) females would have significantly greater canopy water fluxes than males (particularly during periods of seed production: May-June), and (2) xylem in females is more hydraulically efficient but more vulnerable to cavitation than xylem in males. Mean sap flux density (J(s)) during the early growing season (May and June) was 43% higher in female trees than in male trees (n = 6 and 7 trees respectively, P < 0.0001). Mean J(s) in July and August remained 17% higher in females than in males (P = 0.0009). Mean canopy stomatal conductance per unit leaf area (g(s,leaf)) in May and June was on average 140% higher in females than in males (P < 0.0001). Mean g(s,leaf) in July and August remained 69% higher in female trees than in male trees (P < 0.0001). Canopy stomatal conductance scaled to basal area was 90 and 31% higher in females relative to males during May-June and July-August, respectively (P < 0.0001 during both periods). Conversely, there were no apparent differences in either branch hydraulic conductance or branch xylem cavitation vulnerability between genders. These results improve our capacity to describe the adaptive forces that shape the spatial distribution of male and female trees in dioecious species, and their consequences for ecohydrological processes in riparian ecosystems.

  7. Dominance of non-native riparian trees in western USA

    USGS Publications Warehouse

    Friedman, J.M.; Auble, G.T.; Shafroth, P.B.; Scott, M.L.; Merigliano, M.F.; Freehling, M.D.; Griffin, E.R.

    2005-01-01

    Concern about spread of non-native riparian trees in the western USA has led to Congressional proposals to accelerate control efforts. Debate over these proposals is frustrated by limited knowledge of non-native species distribution and abundance. We measured abundance of 44 riparian woody plants at 475 randomly selected stream gaging stations in 17 western states. Our sample indicates that Tamarix ramosissima and Elaeagnus angustifolia are already the third and fourth most frequently occurring woody riparian plants in the region. Although many species of Tamarix have been reported in the region, T. ramosissima (here including T. chinensis and hybrids) is by far the most abundant. The frequency of occurrence of T. ramosissima has a strong positive relation with the mean annual minimum temperature, which is consistent with hypothesized frost sensitivity. In contrast the frequency of occurrence of E. angustifolia decreases with increasing minimum temperatures. Based on mean normalized cover, T. ramosissima and E. angustifolia are the second and fifth most dominant woody riparian species in the western USA. The dominance of T. ramosissima has been suspected for decades; the regional ascendance of E. angustifolia, however, has not previously been reported.

  8. Enhanced transpiration by riparian buffer trees in response to advection in a humid temperate agricultural landscape

    USGS Publications Warehouse

    Hernandez-Santana, V.; Asbjornsen, H.; Sauer, T.; Isenhart, T.; Schilling, K.; Schultz, Ronald

    2011-01-01

    Riparian buffers are designed as management practices to increase infiltration and reduce surface runoff and transport of sediment and nonpoint source pollutants from crop fields to adjacent streams. Achieving these ecosystem service goals depends, in part, on their ability to remove water from the soil via transpiration. In these systems, edges between crop fields and trees of the buffer systems can create advection processes, which could influence water use by trees. We conducted a field study in a riparian buffer system established in 1994 under a humid temperate climate, located in the Corn Belt region of the Midwestern U.S. (Iowa). The goals were to estimate stand level transpiration by the riparian buffer, quantify the controls on water use by the buffer system, and determine to what extent advective energy and tree position within the buffer system influence individual tree transpiration rates. We primarily focused on the water use response (determined with the Heat Ratio Method) of one of the dominant species (Acer saccharinum) and a subdominant (Juglans nigra). A few individuals of three additional species (Quercus bicolor, Betula nigra, Platanus occidentalis) were monitored over a shorter time period to assess the generality of responses. Meteorological stations were installed along a transect across the riparian buffer to determine the microclimate conditions. The differences found among individuals were attributed to differences in species sap velocities and sapwood depths, location relative to the forest edge and prevailing winds and canopy exposure and dominance. Sapflow rates for A. saccharinum trees growing at the SE edge (prevailing winds) were 39% greater than SE interior trees and 30% and 69% greater than NW interior and edge trees, respectively. No transpiration enhancement due to edge effect was detected in the subdominant J. nigra. The results were interpreted as indicative of advection effects from the surrounding crops. Further, significant

  9. Disturbance and California riparian tree establishment

    NASA Astrophysics Data System (ADS)

    Bendix, J.; Cowell, C. M.

    2010-12-01

    As is the case in many ecosystems, tree establishment in riparian corridors is often episodic, following disturbance events that clear colonization sites. In many riparian settings, flooding is the most obvious, and relevant disturbance agent. However, in Mediterranean-climate regions, fire is an equally important disturbance agent. In California, the frequency and severity of both floods and fire are expected to change with projected climate change, making an understanding of their roles key to understanding future ecological processes in California riparian environments. In this paper, we use tree-ring data from the Transverse Ranges of Southern California to explore the relative importance of fire and flood in the establishment of riparian gallery forest. We examined 42 cores of Alnus rhombifolia, Populus fremontii and Quercus agrifolia from the riparian zone adjacent to Piedra Blanca and Potrero John Creeks in California’s Transverse Ranges, and compared their establishment dates with records of fire and floods, to see how establishment related to disturbance history. Our results show some evidence for major fire having an impact, as all of the largest stems dated to the few years following the 1932 Matilija fire, which had burned all of the sites in our sample. The remainder of the record is less straightforward, although there is an establishment peak in the 1970s, which may be related to a 1975 fire that burned part of the Potrero John watershed. Of note, the establishment chronology shows no relationship to the flood record, as years of major floods do not relate to either prolific or sparse years in the tree-ring record. This record suggests that large fires may serve as a trigger for tree establishment in California riparian settings, but that they are hardly a prerequisite, as many stems germinated between fires. Indeed, ongoing regeneration is apparently independent of disturbance, given the apparent irrelevance of flooding in this regard. The result

  10. Review of Invasive Riparian Trees that Impact USACE Ecosystem Restoration Projects

    DTIC Science & Technology

    2016-08-01

    Center (ERDC), Environmental Laboratory (EL) developed this technical note to describe invasive woody trees and shrubs that negatively affect USACE...riparian habitats. BACKGROUND: Non-native species introduced intentionally, or otherwise, have affected native flora and fauna communities throughout...North America. Whether these species are plants, animals, or pathogens (e.g., fungi , bacteria), costs from damages and losses, and costs of efforts

  11. PATTERNS OF TREE DOMINANCE IN CONIFEROUS RIPARIAN FORESTS

    EPA Science Inventory

    This research quantified patterns of riparian tree dominance in western Oregon, USA and then compared the observed patterns with the expected patterns defined from the literature. Research was conducted at 110 riparian sites located on private and public lands. The field sites we...

  12. Establishment area and biogeomorphic feedback window of three pioneer riparian Salicaceae species within a dynamic riparian corridor (Allier River, France)

    NASA Astrophysics Data System (ADS)

    Hortobágyi, Borbála; Corenblit, Dov; Steiger, Johannes; Peiry, Jean-Luc

    2017-04-01

    Within riparian corridors, biotic-abiotic feedback mechanisms occur between woody vegetation which is highly influenced by hydrogeomorphic constraints (e.g. sediment transport and deposition, shear stress, hydrological variability), fluvial landforms and morphodynamics, which in turn are modulated by established vegetation. During field investigations in spring 2015 we analysed on 16 alluvial bars (e.g. point and lateral bars) within the dynamic riparian corridor of the Allier River, France, the aptitude of three pioneer riparian Salicaceae tree species (Populus nigra L., Salix purpurea L. and Salix alba L.) to establish and to act as ecosystem engineers by trapping sediment and constructing fluvial landforms. Our aim was to empirically identify the preferential establishment area (EA; i.e. the local areas where species establish) and the preferential biogeomorphic feedback window (BFW; i.e. where and to what extent the species affect geomorphology) of these three species on alluvial bars within a river reach of a length of 20 km. Our results show that the EA and BFW of all three species significantly varied along the longitudinal, i.e. upstream-downstream exposure on the alluvial bars, and the transverse gradient, i.e. main channel-floodplain gradient of hydrological connectivity. In the current context of the Allier River it appeared that P. nigra, which is the most abundant species, acts as the main engineer species affecting landform dynamics at the bar scale; S. purpurea establishes and acts as an ecosystem engineer in the locations on the alluvial bars which are the most exposed to hydrosedimentary flow dynamics, while S. alba establishes on the bar tail in the vicinity of secondary channels and affects geomorphology in mixed patches with P. nigra. Thus, our study underlines the role of functional trait diversity of riparian engineer species in controlling the extent of fluvial landform construction along geomorphic gradients within riparian corridors exposed

  13. Conserving threatened riparian ecosystems in the American West: Precipitation gradients and river networks drive genetic connectivity and diversity in a foundation riparian tree (Populus angustifolia).

    PubMed

    Bothwell, Helen M; Cushman, Samuel A; Woolbright, Scott A; Hersch-Green, Erika I; Evans, Luke M; Whitham, Thomas G; Allan, Gerard J

    2017-10-01

    Gene flow is an evolutionary process that supports genetic connectivity and contributes to the capacity of species to adapt to environmental change. Yet, for most species, little is known about the specific environmental factors that influence genetic connectivity, or their effects on genetic diversity and differentiation. We used a landscape genetic approach to understand how geography and climate influence genetic connectivity in a foundation riparian tree (Populus angustifolia), and their relationships with specieswide patterns of genetic diversity and differentiation. Using multivariate restricted optimization in a reciprocal causal modelling framework, we quantified the relative contributions of riparian network connectivity, terrestrial upland resistance and climate gradients on genetic connectivity. We found that (i) all riparian corridors, regardless of river order, equally facilitated connectivity, while terrestrial uplands provided 2.5× more resistance to gene flow than riparian corridors. (ii) Cumulative differences in precipitation seasonality and precipitation of the warmest quarter were the primary climatic factors driving genetic differentiation; furthermore, maximum climate resistance was 45× greater than riparian resistance. (iii) Genetic diversity was positively correlated with connectivity (R 2  = 0.3744, p = .0019), illustrating the utility of resistance models for identifying landscape conditions that can support a species' ability to adapt to environmental change. From these results, we present a map highlighting key genetic connectivity corridors across P. angustifolia's range that if disrupted could have long-term ecological and evolutionary consequences. Our findings provide recommendations for conservation and restoration management of threatened riparian ecosystems throughout the western USA and the high biodiversity they support. © 2017 John Wiley & Sons Ltd.

  14. Using Mechanistic Studies to Model Riparian Tree Establishment Under Environmental Flow Scenarios on Regulated Rivers

    NASA Astrophysics Data System (ADS)

    Stella, J. C.; Battles, J. J.; McBride, J. R.; Orr, B. K.

    2007-12-01

    In the Central Valley of California, pioneer cottonwood and willow species dominate the near-river forests. Historically, seedling recruitment for these disturbance-adapted species coincided with spring floods. Changes in flow timing and magnitude due to river regulation have decreased the success of seedling cohorts and contributed to the decline of these riparian tree populations. In order to address gaps in our understanding of these species and potential restoration strategies, we field-calibrated a conceptual model of seedling recruitment for the dominant pioneer woody species, Populus fremontii, Salix gooddingii, and S. exigua. We conducted experiments to identify seedling desiccation thresholds and seed longevity, used field studies to measure seedling competition and seasonal seed release patterns, and modeled interannual differences in dispersal timing using a degree-day model. These studies were integrated into a recruitment model that generates annual estimates of seedling density and bank elevation based on inputs of seasonal river discharge, seed dispersal timing, and seedling mortality from desiccation. The model predictions successfully captured interannual and species-level patterns in recruitment observed independently throughout a 20-km reach of the lower Tuolumne River from 2002-04. The model correctly predicted that seedling densities were highest in 2004 and lowest in 2003, and that S. exigua recruitment would be less extensive than for the two tree species. This work shows promise as both a quantitative approach linking hydrology, climate and plant community dynamics, and as a process-based framework for guiding flow releases and other management actions to restore riparian tree population along Central Valley rivers.

  15. Regeneration responses in partially-harvested riparian management zones in northern Minnesota

    Treesearch

    Douglas N. Kastendick; Brian J. Palik; Eric K. Zenner; Randy K. Kolka; Charles R. Blinn; Joshua J. Kragthorpe

    2014-01-01

    Trees serve important functions in riparian areas. Guidelines often suggest how riparian forests should be managed to sustain functions, including tree retention and increasing the component of conifers and later-successional species. While regeneration of early successional species is not discouraged, there is uncertainty about the ability to regenerate the latter...

  16. Landscape genetic connectivity in a riparian foundation tree is jointly driven by climatic gradients and river networks

    Treesearch

    Samuel A. Cushman; Tamara Max; Nashelly Meneses; Luke M. Evans; Sharon Ferrier; Barbara Honchak; Thomas G. Whitham; Gerard J. Allan

    2014-01-01

    Fremont cottonwood (Populus fremonti) is a foundation riparian tree species that drives community structure and ecosystem processes in southwestern U.S. ecosystems. Despite its ecological importance, little is known about the ecological and environmental processes that shape its genetic diversity, structure, and landscape connectivity. Here, we combined...

  17. Environmental tolerance of an invasive riparian tree and its potential for continued spread in the southwestern US

    USGS Publications Warehouse

    Reynolds, L.V.; Cooper, D.J.

    2010-01-01

    Questions: Exotic plant invasion may be aided by facilitation and broad tolerance of environmental conditions, yet these processes are poorly understood in species-rich ecosystems such as riparian zones. In the southwestern United States (US) two plant species have invaded riparian zones: tamarisk (Tamarix ramosissima, T. chinensis, and their hybrids) and Russian olive (Elaeagnus angustifolia). We addressed the following questions: (1) is Russian olive able to tolerate drier and shadier conditions than cottonwood and tamarisk? (2) Can tamarisk and cottonwood facilitate Russian olive invasion? Location: Arid riparian zones, southwestern US. Methods: We analyzed riparian tree seedling requirements in a controlled experiment, performed empirical field studies, and analyzed stable oxygen isotopes to determine the water sources used by Russian olive. Results: Russian olive survival was significantly higher in dense shade and low moisture conditions than tamarisk and cottonwood. Field observations indicated Russian olive established where flooding cannot occur, and under dense canopies of tamarisk, cottonwood, and Russian olive. Tamarisk and native riparian plant species seedlings cannot establish in these dry, shaded habitats. Russian olive can rely on upper soil water until 15 years of age, before utilizing groundwater. Conclusions: We demonstrate that even though there is little evidence of facilitation by cottonwood and tamarisk, Russian olive is able to tolerate dense shade and low moisture conditions better than tamarisk and cottonwood. There is great potential for continued spread of Russian olive throughout the southwestern US because large areas of suitable habitat exist that are not yet inhabited by this species. ?? 2010 International Association for Vegetation Science.

  18. Revegetation of Riparian Trees and Shrubs on Alluvial Soils Along the Upper Sacramento River, 1987-1988

    Treesearch

    Steven P. Chainey; F. Jordan Lang; Skip Mills

    1989-01-01

    Two sites on the Sacramento River near Red Bluff and Colusa, California were planted with seven native tree species plus valley elderberry (a shrub) in an effort to mitigate for the loss of woody riparian vegetation from bank protection construction projects in the area. The stateowned environmental easements on terraces on the river side of the levees had been planted...

  19. Southwestern Woody Riparian Vegetation and Succession: An Evolutionary Approach

    Treesearch

    R. Roy Johnson; Peter S. Bennett; Lois Haight

    1989-01-01

    Interrelationships between flooding and climax woody vegetation in riparian ecosystems of the desert Southwest are discussed. The lack of succession in woody desert upland and desert riparian plant communities results from opposite stresses, the former from aridity, the latter from flooding. Today's "wet riparian big five" are northern tree species of...

  20. A novel dendrochronological approach reveals drivers of carbon sequestration in tree species of riparian forests across spatiotemporal scales.

    PubMed

    Rieger, Isaak; Kowarik, Ingo; Cherubini, Paolo; Cierjacks, Arne

    2017-01-01

    Aboveground carbon (C) sequestration in trees is important in global C dynamics, but reliable techniques for its modeling in highly productive and heterogeneous ecosystems are limited. We applied an extended dendrochronological approach to disentangle the functioning of drivers from the atmosphere (temperature, precipitation), the lithosphere (sedimentation rate), the hydrosphere (groundwater table, river water level fluctuation), the biosphere (tree characteristics), and the anthroposphere (dike construction). Carbon sequestration in aboveground biomass of riparian Quercus robur L. and Fraxinus excelsior L. was modeled (1) over time using boosted regression tree analysis (BRT) on cross-datable trees characterized by equal annual growth ring patterns and (2) across space using a subsequent classification and regression tree analysis (CART) on cross-datable and not cross-datable trees. While C sequestration of cross-datable Q. robur responded to precipitation and temperature, cross-datable F. excelsior also responded to a low Danube river water level. However, CART revealed that C sequestration over time is governed by tree height and parameters that vary over space (magnitude of fluctuation in the groundwater table, vertical distance to mean river water level, and longitudinal distance to upstream end of the study area). Thus, a uniform response to climatic drivers of aboveground C sequestration in Q. robur was only detectable in trees of an intermediate height class and in taller trees (>21.8m) on sites where the groundwater table fluctuated little (≤0.9m). The detection of climatic drivers and the river water level in F. excelsior depended on sites at lower altitudes above the mean river water level (≤2.7m) and along a less dynamic downstream section of the study area. Our approach indicates unexploited opportunities of understanding the interplay of different environmental drivers in aboveground C sequestration. Results may support species-specific and

  1. Alternative standardization approaches to improving streamflow reconstructions with ring-width indices of riparian trees

    USGS Publications Warehouse

    Meko, David M.; Friedman, Jonathan M.; Touchan, Ramzi; Edmondson, Jesse R.; Griffin, Eleanor R.; Scott, Julian A.

    2015-01-01

    Old, multi-aged populations of riparian trees provide an opportunity to improve reconstructions of streamflow. Here, ring widths of 394 plains cottonwood (Populus deltoids, ssp. monilifera) trees in the North Unit of Theodore Roosevelt National Park, North Dakota, are used to reconstruct streamflow along the Little Missouri River (LMR), North Dakota, US. Different versions of the cottonwood chronology are developed by (1) age-curve standardization (ACS), using age-stratified samples and a single estimated curve of ring width against estimated ring age, and (2) time-curve standardization (TCS), using a subset of longer ring-width series individually detrended with cubic smoothing splines of width against year. The cottonwood chronologies are combined with the first principal component of four upland conifer chronologies developed by conventional methods to investigate the possible value of riparian tree-ring chronologies for streamflow reconstruction of the LMR. Regression modeling indicates that the statistical signal for flow is stronger in the riparian cottonwood than in the upland chronologies. The flow signal from cottonwood complements rather than repeats the signal from upland conifers and is especially strong in young trees (e.g. 5–35 years). Reconstructions using a combination of cottonwoods and upland conifers are found to explain more than 50% of the variance of LMR flow over a 1935–1990 calibration period and to yield reconstruction of flow to 1658. The low-frequency component of reconstructed flow is sensitive to the choice of standardization method for the cottonwood. In contrast to the TCS version, the ACS reconstruction features persistent low flows in the 19th century. Results demonstrate the value to streamflow reconstruction of riparian cottonwood and suggest that more studies are needed to exploit the low-frequency streamflow signal in densely sampled age-stratified stands of riparian trees.

  2. Insects of the riparian

    Treesearch

    Terrence J. Rogers

    1996-01-01

    This paper describes life histories, defoliation problems and other activities of insects associated with forest tree species growing along high elevation streams and river banks. In addition, examples of insects and diseases associated with lower elevation riparian areas are given.

  3. Floodplain ecohydrology: Climatic, anthropogenic, and local physical controls on partitioning of water sources to riparian trees.

    PubMed

    Singer, Michael Bliss; Sargeant, Christopher I; Piégay, Hervé; Riquier, Jérémie; Wilson, Rob J S; Evans, Cristina M

    2014-05-01

    Seasonal and annual partitioning of water within river floodplains has important implications for ecohydrologic links between the water cycle and tree growth. Climatic and hydrologic shifts alter water distribution between floodplain storage reservoirs (e.g., vadose, phreatic), affecting water availability to tree roots. Water partitioning is also dependent on the physical conditions that control tree rooting depth (e.g., gravel layers that impede root growth), the sources of contributing water, the rate of water drainage, and water residence times within particular storage reservoirs. We employ instrumental climate records alongside oxygen isotopes within tree rings and regional source waters, as well as topographic data and soil depth measurements, to infer the water sources used over several decades by two co-occurring tree species within a riparian floodplain along the Rhône River in France. We find that water partitioning to riparian trees is influenced by annual (wet versus dry years) and seasonal (spring snowmelt versus spring rainfall) fluctuations in climate. This influence depends strongly on local (tree level) conditions including floodplain surface elevation and subsurface gravel layer elevation. The latter represents the upper limit of the phreatic zone and therefore controls access to shallow groundwater. The difference between them, the thickness of the vadose zone, controls total soil moisture retention capacity. These factors thus modulate the climatic influence on tree ring isotopes. Additionally, we identified growth signatures and tree ring isotope changes associated with recent restoration of minimum streamflows in the Rhône, which made new phreatic water sources available to some trees in otherwise dry years. Water shifts due to climatic fluctuations between floodplain storage reservoirsAnthropogenic changes to hydrology directly impact water available to treesEcohydrologic approaches to integration of hydrology afford new possibilities.

  4. Floodplain ecohydrology: Climatic, anthropogenic, and local physical controls on partitioning of water sources to riparian trees

    PubMed Central

    Singer, Michael Bliss; Sargeant, Christopher I; Piégay, Hervé; Riquier, Jérémie; Wilson, Rob J S; Evans, Cristina M

    2014-01-01

    Seasonal and annual partitioning of water within river floodplains has important implications for ecohydrologic links between the water cycle and tree growth. Climatic and hydrologic shifts alter water distribution between floodplain storage reservoirs (e.g., vadose, phreatic), affecting water availability to tree roots. Water partitioning is also dependent on the physical conditions that control tree rooting depth (e.g., gravel layers that impede root growth), the sources of contributing water, the rate of water drainage, and water residence times within particular storage reservoirs. We employ instrumental climate records alongside oxygen isotopes within tree rings and regional source waters, as well as topographic data and soil depth measurements, to infer the water sources used over several decades by two co-occurring tree species within a riparian floodplain along the Rhône River in France. We find that water partitioning to riparian trees is influenced by annual (wet versus dry years) and seasonal (spring snowmelt versus spring rainfall) fluctuations in climate. This influence depends strongly on local (tree level) conditions including floodplain surface elevation and subsurface gravel layer elevation. The latter represents the upper limit of the phreatic zone and therefore controls access to shallow groundwater. The difference between them, the thickness of the vadose zone, controls total soil moisture retention capacity. These factors thus modulate the climatic influence on tree ring isotopes. Additionally, we identified growth signatures and tree ring isotope changes associated with recent restoration of minimum streamflows in the Rhône, which made new phreatic water sources available to some trees in otherwise dry years. Key Points Water shifts due to climatic fluctuations between floodplain storage reservoirs Anthropogenic changes to hydrology directly impact water available to trees Ecohydrologic approaches to integration of hydrology afford new

  5. Understory dominance and the new climax: Impacts of Japanese knotweed (Fallopia japonica) invasion on native plant diversity and recruitment in a riparian woodland

    PubMed Central

    Wilson, Matthew J.; Freundlich, Anna E.

    2017-01-01

    Abstract Riparian forests exhibit levels of ecological disturbance that leave them especially prone to biological invasions. Japanese knotweed (Fallopia japonica) is particularly suited to these habitats and is an aggressive invader along watercourses throughout its now-global range as an exotic invader. Using one of the few Silver Maple Floodplain Forest communities that has not been invaded by F. japonica in the West Branch Susquehanna River valley (Pennsylvania, USA) as a baseline, this study examines whether and how this primarily intact riparian forest community differs from nearby invaded communities in terms of 1) native species richness, 2) native species density, and 3) riparian forest tree recruitment. Defining a baseline (intact) community composition will inform restoration plans for local riparian forests where knotweed might be eradicated or reduced. Invaded and non-invaded sites differed statistically across species richness, species density, and tree recruitment. Our results suggest that F. japonica has reduced the diversity and abundance of native understory riparian plant species. The species also appears to have suppressed long-term tree recruitment, setting up a trajectory whereby the eventual decline of trees currently in the canopy could shift this community from a tree-dominated riparian forest to a knotweed-dominated herbaceous shrubland. PMID:29308042

  6. Forestry effects on vertebrate species habitats in the riparian zone

    Treesearch

    Mariko Yamasaki

    2000-01-01

    Three factors influence a coarse-filter approach to the providing wildlife habitat in riparian areas in the northeastern United States. These are: 1) degree of riparian-upland forest connectivity; 2) water regime; and 3) key vegetation structures present in riparian areas that are important to terrestrial vertebrate species.

  7. Status Changes of Bird Species Using Revegetated Riparian Habitats on the Lower Colorado River from 1977 to 1984

    Treesearch

    Bertin W. Anderson; William C. Hunter; Robert D. Ohmart

    1989-01-01

    Two dredge-spoil sites were revegetated on the lower Colorado River with native riparian trees. Another site was cleared of exotic saltcedar (Tamarix chinensis) and revegetated with native shrubs. Sites were censused for birds through all phases of revegetation. Bird species were grouped by natural-history characteristics to determine changes in the...

  8. Abundance and production of riparian trees in the lowland floodplain of the Queets River, Washington.

    Treesearch

    Estelle V. Balian; Robert J. Naiman

    2005-01-01

    Riparian zones associated with alluvial rivers are spatially dynamic, forming distinct vegetative mosaics that exhibit sharp contrasts in structure and processes related to the underlying biophysical template. The productivity of riparian plants, especially trees, influences streamside community characteristics as, well as the forms and fluxes of organic matter to...

  9. Assessing the extent and diversity of riparian ecosystems in Sonora, Mexico

    USGS Publications Warehouse

    Scott, M.L.; Nagler, P.L.; Glenn, E.P.; Valdes-Casillas, C.; Erker, J.A.; Reynolds, E.W.; Shafroth, P.B.; Gomez-Limon, E.; Jones, C.L.

    2009-01-01

    Conservation of forested riparian ecosystems is of international concern. Relatively little is known of the structure, composition, diversity, and extent of riparian ecosystems in Mexico. We used high- and low-resolution satellite imagery from 2000 to 2006, and ground-based sampling in 2006, to assess the spatial pattern, extent, and woody plant composition of riparian forests across a range of spatial scales for the state of Sonora, Mexico. For all 3rd and higher order streams, river bottomlands with riparian forests occupied a total area of 2,301 km2. Where forested bottomlands remained, on average, 34% of the area had been converted to agriculture while 39% remained forested. We estimated that the total area of riparian forest along the principal streams was 897 km2. Including fencerow trees, the total forested riparian area was 944 km2, or 0.5% of the total land area of Sonora. Ground-based sampling of woody riparian vegetation consisted of 92, 50 m radius circular plots. About 79 woody plant species were noted. The most important tree species, based on cover and frequency, were willow species Salix spp. (primarily S. goodingii and S. bonplandiana), mesquite species Prosopis spp. (primarily P. velutina), and Fremont cottonwood Populus fremontii. Woody riparian taxa at the reach scale showed a trend of increasing diversity from north to south within Sonora. Species richness was greatest in the willow-bald cypress Taxodium distichum var. mexicanum-Mexican cottonwood P. mexicana subsp. dimorphia ecosystem. The non-native tamarisk Tamarix spp. was rare, occurring at just three study reaches. Relatively natural stream flow patterns and fluvial disturbance regimes likely limit its establishment and spread. ?? 2008 Springer Science + Business Media BV.

  10. Demographic histories of adaptively diverged riparian and non-riparian species of Ainsliaea (Asteraceae) inferred from coalescent analyses using multiple nuclear loci

    PubMed Central

    2012-01-01

    Background Understanding demographic histories, such as divergence time, patterns of gene flow, and population size changes, in ecologically diverging lineages provide implications for the process and maintenance of population differentiation by ecological adaptation. This study addressed the demographic histories in two independently derived lineages of flood-resistant riparian plants and their non-riparian relatives [Ainsliaea linearis (riparian) and A. apiculata (non-riparian); A. oblonga (riparian) and A. macroclinidioides (non-riparian); Asteraceae] using an isolation-with-migration (IM) model based on variation at 10 nuclear DNA loci. Results The highest posterior probabilities of the divergence time parameters were estimated to be ca. 25,000 years ago for A. linearis and A. apiculata and ca. 9000 years ago for A. oblonga and A. macroclinidioides, although the confidence intervals of the parameters had broad ranges. The likelihood ratio tests detected evidence of historical gene flow between both riparian/non-riparian species pairs. The riparian populations showed lower levels of genetic diversity and a significant reduction in effective population sizes compared to the non-riparian populations and their ancestral populations. Conclusions This study showed the recent origins of flood-resistant riparian plants, which are remarkable examples of plant ecological adaptation. The recent divergence and genetic signatures of historical gene flow among riparian/non-riparian species implied that they underwent morphological and ecological differentiation within short evolutionary timescales and have maintained their species boundaries in the face of gene flow. Comparative analyses of adaptive divergence in two sets of riparian/non-riparian lineages suggested that strong natural selection by flooding had frequently reduced the genetic diversity and size of riparian populations through genetic drift, possibly leading to fixation of adaptive traits in riparian

  11. Demographic histories of adaptively diverged riparian and non-riparian species of Ainsliaea (Asteraceae) inferred from coalescent analyses using multiple nuclear loci.

    PubMed

    Mitsui, Yuki; Setoguchi, Hiroaki

    2012-12-28

    Understanding demographic histories, such as divergence time, patterns of gene flow, and population size changes, in ecologically diverging lineages provide implications for the process and maintenance of population differentiation by ecological adaptation. This study addressed the demographic histories in two independently derived lineages of flood-resistant riparian plants and their non-riparian relatives [Ainsliaea linearis (riparian) and A. apiculata (non-riparian); A. oblonga (riparian) and A. macroclinidioides (non-riparian); Asteraceae] using an isolation-with-migration (IM) model based on variation at 10 nuclear DNA loci. The highest posterior probabilities of the divergence time parameters were estimated to be ca. 25,000 years ago for A. linearis and A. apiculata and ca. 9000 years ago for A. oblonga and A. macroclinidioides, although the confidence intervals of the parameters had broad ranges. The likelihood ratio tests detected evidence of historical gene flow between both riparian/non-riparian species pairs. The riparian populations showed lower levels of genetic diversity and a significant reduction in effective population sizes compared to the non-riparian populations and their ancestral populations. This study showed the recent origins of flood-resistant riparian plants, which are remarkable examples of plant ecological adaptation. The recent divergence and genetic signatures of historical gene flow among riparian/non-riparian species implied that they underwent morphological and ecological differentiation within short evolutionary timescales and have maintained their species boundaries in the face of gene flow. Comparative analyses of adaptive divergence in two sets of riparian/non-riparian lineages suggested that strong natural selection by flooding had frequently reduced the genetic diversity and size of riparian populations through genetic drift, possibly leading to fixation of adaptive traits in riparian populations. The two sets of riparian/non-riparian

  12. The Role of Native Tree Species on Leaf Breakdown Dynamics of the Invasive Tree of Heaven ( Ailanthus altissima) in an Urban Stream

    NASA Astrophysics Data System (ADS)

    Swan, C.; Healey, B.

    2005-05-01

    Anthropogenic disturbance of ecosystem processes is increasingly being explored in urban settings. One profound impact is the striking increase in the distribution of invasive plant species. For example, Tree of Heaven (Ailanthus altissima, TOH), introduced into the U.S. from Asia in 1784, is a successful colonist of recently deforested habitats. As a result, remnant patches in urban ecosystems have become overrun with this tree species, excluding native species via fast growth and allelopathy. While suffering from human-induced degradation, urban streams still support food webs that function to process riparian-derived organic matter (e.g., leaves, wood). The purpose of this study was to (1) estimate leaf litter breakdown of native tree leaves and those of TOH in an urban stream, (2) study the detritivore feeding rate of the same leaf species, and (3) determine if increasing native species richness of leaf litter can alter breakdown of TOH leaves. Field manipulations of leaf pack composition were done in a highly urbanized stream (>30% upstream urban land use) in Baltimore County, Maryland, USA. This was complimented by a series of laboratory feeding experiments employing similar leaf treatments and local shredding invertebrate taxa. Breakdown of TOH alone was extremely rapid, significantly exceeding that of all native tree species employed. Furthermore, mixing TOH with native tree species, red maple and white oak, substantially reduced TOH decay compared to decay of TOH alone. However, supporting laboratory studies showed that TOH was a preferred resource by shredding invertebrates over all native species. Subsequent analysis of the structural integrity of all leaf species revealed that TOH was the least resistant to force, possibly explaining the counterintuitive decrease of TOH decay in mixtures. We interpret this as meaning the stream invertebrates, while preferring to consume TOH, appeared not to influence TOH decay in mixtures with native species. Instead

  13. Riparian zones as havens for exotic plant species in the central grasslands

    USGS Publications Warehouse

    Stohlgren, T.J.; Bull, K.A.; Otsuki, Yuka; Villa, C.A.; Lee, M.

    1998-01-01

    In the Central Grasslands of the United States, we hypothesized that riparian zones high in soil fertility would contain more exotic plant species than upland areas of low soil fertility. Our alternate hypothesis was that riparian zones high in native plant species richness and cover would monopolize available resources and resist invasion by exotic species. We gathered nested-scale vegetation data from 40 1 m2subplots (nested in four 1000 m2 plots) in both riparian and upland sites at four study areas in Colorado, Wyoming, and South Dakota (a total of 320 1 m2subplots and 32 1000 m2 plots). At the 1 m2 scale, mean foliar cover of native species was significantly greater (P < 0.001) in riparian zones (36.6% ?? 1.7%) compared to upland sites (28.7% ?? 1.5%), but at this small scale there were no consistent patterns of native and exotic species richness among the four management areas. Mean exotic species cover was slightly higher in upland sites compared to riparian sites (9.0% ?? 3.8% versus 8.2% ?? 3.0% cover). However, mean exotic species richness and cover were greater in the riparian zones than upland sites in three of four management areas. At the 1000 m2 scale, mean exotic species richness was also significantly greater (P < 0.05) in riparian zones (7.8 ?? 1.0 species) compared to upland sites (4.8 ?? 1.0 species) despite the heavy invasion of one upland site. For all 32 plots combined, 21% of the variance in exotic species richness was explained by positive relationships with soil % silt (t = 1.7, P = 0.09) and total foliar cover (t = 2.4, P = 0.02). Likewise, 26% of the variance in exotic species cover (log10 cover) was explained by positive relationships with soil % silt (t = 2.3, P = 0.03) and total plant species richness (t = 2.4, P = 0.02). At landscape scales (four 1000 m2 plots per type combined), total foliar cover was significantly and positively correlated with exotic species richness (r = 0.73, P < 0.05) and cover (r = 0.74, P < 0.05). Exotic

  14. Impacts of hydroelectric dams on alluvial riparian plant communities in Eastern Brazilian Amazonian.

    PubMed

    Ferreira, Leandro Valle; Cunha, Denise A; Chaves, Priscilla P; Matos, Darley C L; Parolin, Pia

    2013-09-01

    The major rivers of the Amazon River basin and their biota are threatened by the planned construction of large hydroelectric dams that are expected to have strong impacts on floodplain plant communities. The present study presents forest inventories from three floodplain sites colonized by alluvial riparian vegetation in the Tapajós, Xingu and Tocantins River basins in eastern Amazonian. Results indicate that tree species of the highly specialized alluvial riparian vegetation are clearly distinct among the three river basins, although they are not very distinct from each other and environmental constraints are very similar. With only 6 of 74 species occurring in all three inventories, most tree and shrub species are restricted to only one of the rivers, indicating a high degree of local distribution. Different species occupy similar environmental niches, making these fragile riparian formations highly valuable. Conservation plans must consider species complementarily when decisions are made on where to place floodplain forest conservation units to avoid the irreversible loss of unique alluvial riparian vegetation biodiversity.

  15. Effects of drought on birds and riparian vegetation in the Colorado River Delta, Mexico

    USGS Publications Warehouse

    Hinojosa-Huerta, Osvel; Nagler, Pamela L.; Carrillo-Guererro, Yamilett K.; Glenn, Edward P.

    2013-01-01

    The riparian corridor in the delta of the Colorado River in Mexico supports internationally important bird habitat. The vegetation is maintained by surface flows from the U.S. and Mexico and by a high, non-saline aquifer into which the dominant phreatophytic shrubs and trees are rooted. We studied the effects of a regional drought on riparian vegetation and avian abundance and diversity from 2002 to 2007, during which time surface flows were markedly reduced compared to the period from 1995 to 2002. Reduced surface flows led to a reduction in native tree cover but an increase in shrub cover, mostly due to an increase in Tamarix spp., an introduced halophytic shrub, and a reduction in Populus fremontii and Salix gooddingii trees. However, overall vegetation cover was unchanged at about 70%. Overall bird density and diversity were also unchanged, but riparian-obligate species tended to decrease in abundance, and generalist species increased. Although reduction in surface flows reduced habitat value and negatively impacted riparian-obligate bird species, portions of the riparian zone exhibited resilience. Surface flows are required to reduce soil salt levels and germinate new cohorts of native trees, but the main source of water supporting this ecosystem is the aquifer, derived from underflows from irrigated fields in the U.S. and Mexico. The long-term prospects for delta riparian habitats are uncertain due to expected reduced flows of river water from climate change, and land use practices that will reduce underflows to the riparian aquifer and increase salinity levels. Active restoration programs would be needed if these habitats are to be preserved for the future.

  16. Sensitivity of a Riparian Large Woody Debris Recruitment Model to the Number of Contributing Banks and Tree Fall Pattern

    Treesearch

    Don C. Bragg; Jeffrey L. Kershner

    2004-01-01

    Riparian large woody debris (LWD) recruitment simulations have traditionally applied a random angle of tree fall from two well-forested stream banks. We used a riparian LWD recruitment model (CWD, version 1.4) to test the validity these assumptions. Both the number of contributing forest banks and predominant tree fall direction significantly influenced simulated...

  17. Niche construction within riparian corridors. Part II: The unexplored role of positive intraspecific interactions in Salicaceae species

    NASA Astrophysics Data System (ADS)

    Corenblit, Dov; Garófano-Gómez, Virginia; González, Eduardo; Hortobágyi, Borbála; Julien, Frédéric; Lambs, Luc; Otto, Thierry; Roussel, Erwan; Steiger, Johannes; Tabacchi, Eric; Till-Bottraud, Irène

    2018-03-01

    Within riparian corridors, Salicaceae trees and shrubs affect hydrogeomorphic processes and lead to the formation of wooded fluvial landforms. These trees form dense stands and enhance plant anchorage, as grouped plants are less prone to be uprooted than free-standing individuals. This also enhances their role as ecosystem engineers through the trapping of sediment, organic matter, and nutrients. The landform formation caused by these wooded biogeomorphic landforms probably represents a positive niche construction, which ultimately leads, through facilitative processes, to an improved capacity of the individual trees to survive, exploit resources, and reach sexual maturity in the interval between destructive floods. The facilitative effects of riparian vegetation are well established; however, the nature and intensity of biotic interactions among trees of the same species forming dense woody stands and constructing the niche remain unclear. Our hypothesis is that the niche construction process also comprises more direct intraspecific interactions, such as cooperation or altruism. Our aim in this paper is to propose an original theoretical framework for positive intraspecific interactions among riparian Salicaceae species operating from establishment to sexual maturity. Within this framework, we speculate that (i) positive intraspecific interactions among trees are maximized in dynamic river reaches; (ii) during establishment, intraspecific facilitation (or helping) occurs among trees and this leads to the maintenance of a dense stand that improves survival and growth because saplings protect each other from shear stress and scour; (iii) in addition to the improved capacity to trap mineral and organic matter, individuals that constitute the dense stand can cooperate to mutually support a mycorrhizal network that will connect plants, soil, and groundwater and influence nutrient transfer, cycling, and storage within the shared constructed niche; (iv) during post

  18. Conservation status of a threatened tree species: establishing a baseline for restoration of Juglans cinerea L

    Treesearch

    Amanda M. Parks; Michael A. Jenkins; Keith E. Woeste; Michael E. Ostry

    2013-01-01

    To mitigate the loss of native tree species threatened by non-native pathogens, managers need to better understand the conservation status of remaining populations and the conditions that favor successful regeneration. Populations of Juglans cinerea L. (butternut), a wide-ranging riparian species, have been devastated by butternut canker, a disease...

  19. Channel-dynamic control on the establishment of riparian trees after large floods in northwestern California

    Treesearch

    Thomas E. Lisle

    1989-01-01

    Abstract - Large floods in northwestern California in the past two decades have mobilized extensive areas of valley floors, removed streamside trees, and widened channels. Channel cross sections were surveyed to illustrate an hypothesis on the linkage between sediment transport, colonization of channel margins by trees, and streambank recovery. Riparian trees, e.g.,...

  20. Channel-Dynamic Control on the Establishment of Riparian Trees After Large Floods in Northwestern California

    Treesearch

    Thomas E. Lisle

    1989-01-01

    Large floods in northwestern California in the past two decades have mobilized extensive areas of valley floors, removed streamside trees, and widened channels. Channel cross sections were surveyed to illustrate an hypothesis on the linkage between sediment transport, colonization of channel margins by trees, and streambank recovery. Riparian trees, e.g., white alder...

  1. Nitrate in groundwater and water sources used by riparian trees in an agricultural watershed: A chemical and isotopic investigation in southern Minnesota

    USGS Publications Warehouse

    Komor, Stephen C.; Magner, Joseph A.

    1996-01-01

    This study evaluates processes that affect nitrate concentrations in groundwater beneath riparian zones in an agricultural watershed. Nitrate pathways in the upper 2 m of groundwater were investigated beneath wooded and grass-shrub riparian zones next to cultivated fields. Because trees can be important components of the overall nitrate pathway in wooded riparian zones, water sources used by riparian trees and possible effects of trees on nitrate concentrations in groundwater were also investigated. Average nitrate concentrations in shallow groundwater beneath the cultivated fields were 5.5 mg/L upgradient of the wooded riparian zone and 3.5 mg/L upgradient of the grass-shrub zone. Shallow groundwater beneath the fields passed through the riparian zones and discharged into streams that had average nitrate concentrations of 8.5 mg/L (as N). Lateral variations of δD values in groundwater showed that mixing among different water sources occurred beneath the riparian zones. In the wooded riparian zone, nitrate concentrations in shallow groundwater were diluted by upwelling, nitrate-poor, deep groundwater. Upwelling deep groundwater contained ammonium with a δ15N of 5‰ that upon nitrification and mixing with nitrate in shallow groundwater caused nitrate δ15N values in shallow groundwater to decrease by as much as 19.5‰. Stream water penetrated laterally beneath the wooded riparian zone as far as 19 m from the stream's edge and beneath the grass-shrub zone as far as 27 m from the stream's edge. Nitrate concentrations in shallow groundwater immediately upgradient of where it mixed with stream water averaged 0.4 mg/L in the wooded riparian zone and 0.8 mg/L near the grass-shrub riparian zone. Nitrate concentrations increased toward the streams because of mixing with nitrate-rich stream water. Because nitrate concentrations were larger in stream water than shallow groundwater, concentrated nitrate in the streams cannot have come from shallow groundwater at these

  2. Does tree harvesting in riparian areas increase stream sedimentation and turbidity - world-wide experience relative to Australia.

    NASA Astrophysics Data System (ADS)

    Neary, D.; Smethurst, P.; Petrone, K.

    2009-04-01

    A typical improved-pasture property in the high-rainfall zone of Australia contains 0.5-2.0 km of waterways per 100 ha. Nationwide, some 25-30 million ha of improved pasture contains about 100,000 km of streams, of which about 75% are currently un-buffered and contributing to soil and water degradation. Farmers and natural resource managers are considering ways to enhance environmental outcomes at farm and catchment scales using stream-side buffers of trees and other perennial vegetation. Benefits of buffers include improved water quality, biodiversity, carbon sequestration and aesthetics. Lack of sound information and funding for establishing and managing buffer zones is hindering wide-scale adoption of this practice. Stream-side areas of farms are generally highly productive (wet and nutrient-rich) and contain a high biodiversity, but they are also high-risk zones for soil and water values and stock safety. Development of options based on a balance between environmental and economic outcomes would potentially promote wider adoption. Australian codes of forest practice currently discourage or prevent harvesting of trees in streamside buffers. These codes were developed exclusively for large-scale native forests and industrial-scale plantations, and were applicable to farm forestry as now required. In countries including USA and Germany trees in stream-side buffers are harvested using Best Management Practices. Trees may grow at a faster rate in riparian zones and provide a commercial return, but the impacts of tree establishment and harvesting on water yield and quality must be evaluated. However, there have been few designed experiments investigating this problem. Australia has recently initiated studies to explore the use of high-value timber species and associated vegetation in riparian zones to improve water quality, particularly suspended sediment. Preliminary information from the Yan Yan Gurt Catchment in Victoria indicate that forested riparian strips can

  3. Precipitation v. River Discharge Controls on Water Availability to Riparian Trees in the Rhône River Delta

    NASA Astrophysics Data System (ADS)

    Singer, M. B.; Sargeant, C. I.; Vallet-Coulomb, C.; Evans, C.; Bates, C. R.

    2014-12-01

    Water availability to riparian trees in lowlands is controlled through precipitation and its infiltration into floodplain soils, and through river discharge additions to the hyporheic water table. The relative contributions of both water sources to the root zone within river floodplains vary through time, depending on climatic fluctuations. There is currently limited understanding of how climatic fluctuations are expressed at local scales, especially in 'critical zone' hydrology, which is fundamental to the health and sustainability of riparian forest ecosystems. This knowledge is particularly important in water-stressed Mediterranean climate systems, considering climatic trends and projections toward hotter and drier growing seasons, which have the potential to dramatically reduce water availability to riparian forests. Our aim is to identify and quantify the relative contributions of hyporheic (discharge) water v. infiltrated precipitation to water uptake by riparian Mediterranean trees for several distinct hydrologic years, selected to isolate contrasts in water availability from these sources. Our approach includes isotopic analyses of water and tree-ring cellulose, mechanistic modeling of water uptake and wood production, and physically based modeling of subsurface hydrology. We utilize an extensive database of oxygen isotope (δ18O) measurements in surface water and precipitation alongside recent measurements of δ18O in groundwater and soil water and in tree-ring cellulose. We use a mechanistic model to back-calculate source water δ18O based on δ18O in cellulose and climate data. Finally, we test our results via 1-D hydrologic modeling of precipitation infiltration and water table rise and fall. These steps enable us to interpret hydrologic cycle variability within the 'critical zone' and their potential impact on riparian trees.

  4. Importance of riparian remnants for frog species diversity in a highly fragmented rainforest.

    PubMed

    Rodríguez-Mendoza, Clara; Pineda, Eduardo

    2010-12-23

    Tropical forests undergo continuous transformation to other land uses, resulting in landscapes typified by forest fragments surrounded by anthropogenic habitats. Small forest fragments, specifically strip-shaped remnants flanking streams (referred to as riparian remnants), can be particularly important for the maintenance and conservation of biodiversity within highly fragmented forests. We compared frog species diversity between riparian remnants, other forest fragments and cattle pastures in a tropical landscape in Los Tuxtlas, Mexico. We found similar species richness in the three habitats studied and a similar assemblage structure between riparian remnants and forest fragments, although species composition differed by 50 per cent. Frog abundance was halved in riparian remnants compared with forest fragments, but was twice that found in pastures. Our results suggest that riparian remnants play an important role in maintaining a portion of frog species diversity in a highly fragmented forest, particularly during environmentally stressful (hot and dry) periods. In this regard, however, the role of riparian remnants is complementary, rather than substitutive, with respect to the function of other forest fragments within the fragmented forest.

  5. The Crescent Bypass: A Riparian Restoration Project on the Kings River (Fresno County)

    Treesearch

    Jonathan A. Oldham; Bradley E. Valentine

    1989-01-01

    The Kings River Conservation District planted over 1200 plants of 19 riparian species in the first of two phases of a riparian revegetation project in the San Joaquin Valley. To date, tree survival rates vary from 17 to 96 percent among species, with an overall rate of 62 percent. Shrub survival averages 57 percent and ranges from 23 to 73 percent. Factors affecting...

  6. Niche construction within riparian corridors. Part I: Exploring biogeomorphic feedback windows of three pioneer riparian species (Allier River, France)

    NASA Astrophysics Data System (ADS)

    Hortobágyi, Borbála; Corenblit, Dov; Steiger, Johannes; Peiry, Jean-Luc

    2018-03-01

    Within riparian corridors, biotic-abiotic feedback mechanisms occur between woody vegetation strongly influenced by hydrogeomorphic constraints (e.g., sediment transport and deposition, shear stress, hydrological variability), fluvial landforms, and morphodynamics, which in turn are modulated by the established vegetation. During field investigations in spring 2015, we studied 16 alluvial bars (e.g., point and lateral bars) within the dynamic riparian corridor of the Allier River (France) to assess the aptitude of three pioneer riparian Salicaceae species (Populus nigra L., Salix purpurea L., and Salix alba L.) to establish and act as ecosystem engineers by trapping sediment and constructing fluvial landforms. Our aim is to empirically identify the preferential establishment area (EA; i.e., the local areas where species become established) and the preferential biogeomorphic feedback window (BFW; i.e., where and to what extent the species and geomorphology interact) of these three species on alluvial bars within a 20-km-long river reach. Our results show that the EA and BFW of all three species vary significantly along the longitudinal profile, i.e., upstream-downstream exposure on the alluvial bars, as well as transversally, i.e., the main hydrological connectivity gradient from the river channel toward the floodplain. In the present-day context of the Allier River, P. nigra is the most abundant species, appearing to act as the main engineer species affecting landform dynamics at the bar scale; S. purpurea is established and acts as an ecosystem engineer at locations on alluvial bars that are most exposed to hydrosedimentary flow dynamics, while S. alba is established on the bar tail close to secondary channels and affects the geomorphology in mixed patches along with P. nigra. Our study highlights the role of functional trait diversity of riparian engineer species in controlling the extent of fluvial landform construction along geomorphic gradients within riparian

  7. Surface runoff and retention of transported pollutants in strips of riparian vegetation with and without trees

    NASA Astrophysics Data System (ADS)

    Giaccio, Gustavo; Laterra, Pedro; Aparicio, Virginia; Costa, Jose Luis

    2017-04-01

    In this study, some aspects related to the effect of the crack willow (Salix fragilis L.) invasion on the reduction of runoff and sediment retention, glyphosate, nitrogen and phosphorus in riparian environments with herbaceous vegetation of the Austral Pampa of Argentina were analysed. In order to evaluate the influence of the willows on the filtering mechanisms, surface runoff simulation experiments were carried out in plots of 1.5 m x 2.5 m in environments characterized by the presence vs. the absence of willows. In spite of the small length of the experimental plots, glyphosate retention in the tree-less plots reached 73.6%, a higher value than that recorded in tree stands (43.8%). However, sediment, nitrogen and phosphorus retention did not vary significantly between treatments. On the other hand, the reduction of the volume of runoff in the sites with trees reached 63%, a superior value to the one registered in strips without trees (31%). The presence of trees only significantly modified the biophysical properties of hydraulic conductivity, surface roughness, aerial biomass and soil moisture, compared to areas with no trees. Partial correlation analysis for both tree and no-tree environments showed that the reduction in runoff volume increased significantly with hydraulic conductivity, soil sand content and depth at the water table, and decreased with apparent density, soil moisture and the slope of the riverbank. However, sediment retention increased significantly with aerial, mulch and root biomass and decreased with the slope of the riparian strip. Glyphosate retention increased significantly with sediment retention and decreased with the slope of the riparian strip and the mulch biomass. Nitrogen retention increased with the reduction of runoff flow, soil hydraulic conductivity and depth to the water table and decreased with slope and sediment retention. While, phosphorus retention increased with sediment retention and decreased with slope and soil content

  8. Flow reconstructions in the Upper Missouri River Basin using riparian tree rings

    NASA Astrophysics Data System (ADS)

    Schook, Derek M.; Friedman, Jonathan M.; Rathburn, Sara L.

    2016-10-01

    River flow reconstructions are typically developed using tree rings from montane conifers that cannot reflect flow regulation or hydrologic inputs from the lower portions of a watershed. Incorporating lowland riparian trees may improve the accuracy of flow reconstructions when these trees are physically linked to the alluvial water table. We used riparian plains cottonwoods (Populus deltoides ssp. monilifera) to reconstruct discharge for three neighboring rivers in the Upper Missouri River Basin: the Yellowstone (n = 389 tree cores), Powder (n = 408), and Little Missouri Rivers (n = 643). We used the Regional Curve Standardization approach to reconstruct log-transformed discharge over the 4 months in early summer that most highly correlated to tree ring growth. The reconstructions explained at least 57% of the variance in historical discharge and extended back to 1742, 1729, and 1643. These are the first flow reconstructions for the Lower Yellowstone and Powder Rivers, and they are the furthest downstream among Rocky Mountain rivers in the Missouri River Basin. Although mostly free-flowing, the Yellowstone and Powder Rivers experienced a shift from early-summer to late-summer flows within the last century. This shift is concurrent with increasing irrigation and reservoir storage, and it corresponds to decreased cottonwood growth. Low-frequency flow patterns revealed wet conditions from 1870 to 1980, a period that includes the majority of the historical record. The 1816-1823 and 1861-1865 droughts were more severe than any recorded, revealing that drought risks are underestimated when using the instrumental record alone.

  9. Object-based class modelling for multi-scale riparian forest habitat mapping

    NASA Astrophysics Data System (ADS)

    Strasser, Thomas; Lang, Stefan

    2015-05-01

    Object-based class modelling allows for mapping complex, hierarchical habitat systems. The riparian zone, including forests, represents such a complex ecosystem. Forests within riparian zones are biologically high productive and characterized by a rich biodiversity; thus considered of high community interest with an imperative to be protected and regularly monitored. Satellite earth observation (EO) provides tools for capturing the current state of forest habitats such as forest composition including intermixture of non-native tree species. Here we present a semi-automated object based image analysis (OBIA) approach for the mapping of riparian forests by applying class modelling of habitats based on the European Nature Information System (EUNIS) habitat classifications and the European Habitats Directive (HabDir) Annex 1. A very high resolution (VHR) WorldView-2 satellite image provided the required spatial and spectral details for a multi-scale image segmentation and rule-base composition to generate a six-level hierarchical representation of riparian forest habitats. Thereby habitats were hierarchically represented within an image object hierarchy as forest stands, stands of homogenous tree species and single trees represented by sunlit tree crowns. 522 EUNIS level 3 (EUNIS-3) habitat patches with a mean patch size (MPS) of 12,349.64 m2 were modelled from 938 forest stand patches (MPS = 6868.20 m2) and 43,742 tree stand patches (MPS = 140.79 m2). The delineation quality of the modelled EUNIS-3 habitats (focal level) was quantitatively assessed to an expert-based visual interpretation showing a mean deviation of 11.71%.

  10. Riparian trees and aridland streams of the southwestern United States: An assessment of the past, present, and future

    Treesearch

    D. Max Smith; Deborah M. Finch

    2016-01-01

    Riparian ecosystems are vital components of aridlands within the southwestern United States. Historically, surface flows influenced population dynamics of native riparian trees. Many southwestern streams has been altered by regulation, however, and will be further affected by greenhouse warming. Our analysis of stream gage data revealed that decreases in...

  11. Flow reconstructions in the Upper Missouri River Basin using riparian tree rings

    USGS Publications Warehouse

    Schook, Derek M.; Friedman, Jonathan M.; Rathburn, Sara L.

    2016-01-01

    River flow reconstructions are typically developed using tree rings from montane conifers that cannot reflect flow regulation or hydrologic inputs from the lower portions of a watershed. Incorporating lowland riparian trees may improve the accuracy of flow reconstructions when these trees are physically linked to the alluvial water table. We used riparian plains cottonwoods (Populus deltoides ssp. monilifera) to reconstruct discharge for three neighboring rivers in the Upper Missouri River Basin: the Yellowstone (n = 389 tree cores), Powder (n = 408), and Little Missouri Rivers (n = 643). We used the Regional Curve Standardization approach to reconstruct log-transformed discharge over the 4 months in early summer that most highly correlated to tree ring growth. The reconstructions explained at least 57% of the variance in historical discharge and extended back to 1742, 1729, and 1643. These are the first flow reconstructions for the Lower Yellowstone and Powder Rivers, and they are the furthest downstream among Rocky Mountain rivers in the Missouri River Basin. Although mostly free-flowing, the Yellowstone and Powder Rivers experienced a shift from early-summer to late-summer flows within the last century. This shift is concurrent with increasing irrigation and reservoir storage, and it corresponds to decreased cottonwood growth. Low-frequency flow patterns revealed wet conditions from 1870 to 1980, a period that includes the majority of the historical record. The 1816–1823 and 1861–1865 droughts were more severe than any recorded, revealing that drought risks are underestimated when using the instrumental record alone.

  12. Inter-species competition-facilitation in stochastic riparian vegetation dynamics.

    PubMed

    Tealdi, Stefano; Camporeale, Carlo; Ridolfi, Luca

    2013-02-07

    Riparian vegetation is a highly dynamic community that lives on river banks and which depends to a great extent on the fluvial hydrology. The stochasticity of the discharge and erosion/deposition processes in fact play a key role in determining the distribution of vegetation along a riparian transect. These abiotic processes interact with biotic competition/facilitation mechanisms, such as plant competition for light, water, and nutrients. In this work, we focus on the dynamics of plants characterized by three components: (1) stochastic forcing due to river discharges, (2) competition for resources, and (3) inter-species facilitation due to the interplay between vegetation and fluid dynamics processes. A minimalist stochastic bio-hydrological model is proposed for the dynamics of the biomass of two vegetation species: one species is assumed dominant and slow-growing, the other is subdominant, but fast-growing. The stochastic model is solved analytically and the probability density function of the plant biomasses is obtained as a function of both the hydrologic and biologic parameters. The impact of the competition/facilitation processes on the distribution of vegetation species along the riparian transect is investigated and remarkable effects are observed. Finally, a good qualitative agreement is found between the model results and field data. Copyright © 2012 Elsevier Ltd. All rights reserved.

  13. Metapopulation modelling of riparian tree species persistence in river networks under climate change.

    PubMed

    Van Looy, Kris; Piffady, Jérémy

    2017-11-01

    Floodplain landscapes are highly fragmented by river regulation resulting in habitat degradation and flood regime perturbation, posing risks to population persistence. Climate change is expected to pose supplementary risks in this context of fragmented landscapes, and especially for river systems adaptation management programs are developed. The association of habitat quality and quantity with the landscape dynamics and resilience to human-induced disturbances is still poorly understood in the context of species survival and colonization processes, but essential to prioritize conservation and restoration actions. We present a modelling approach that elucidates network connectivity and landscape dynamics in spatial and temporal context to identify vital corridors and conservation priorities in the Loire river and its tributaries. Alteration of flooding and flow regimes is believed to be critical to population dynamics in river ecosystems. Still, little is known of critical levels of alteration both spatially and temporally. We applied metapopulation modelling approaches for a dispersal-limited tree species, white elm; and a recruitment-limited tree species, black poplar. In different model steps the connectivity and natural dynamics of the river landscape are confronted with physical alterations (dams/dykes) to species survival and then future scenarios for climatic changes and potential adaptation measures are entered in the model and translated in population persistence over the river basin. For the two tree species we highlighted crucial network zones in relation to habitat quality and connectivity. Where the human impact model already shows currently restricted metapopulation development, climate change is projected to aggravate this persistence perspective substantially. For both species a significant drawback to the basin population is observed, with 1/3 for elm and ¼ for poplar after 25 years already. But proposed adaptation measures prove effective to even

  14. Comparing the Sexual Reproductive Success of Two Exotic Trees Invading Spanish Riparian Forests vs. a Native Reference.

    PubMed

    Cabra-Rivas, Isabel; Castro-Díez, Pilar

    2016-01-01

    A widely accepted hypothesis in invasion ecology is that invasive species have higher survival through the early stages of establishment than do non-invasive species. In this study we explore the hypothesis that the sexual reproductive success of the invasive trees Ailanthus altissima (Mill.) Swingle and Robinia pseudoacacia L. is higher than that of the native Fraxinus angustifolia Vahl., all three species coexisting within the riparian forests of Central Spain. We compared different stages of the early life cycle, namely seed rain, seed infestation by insects, seed removal by local fauna, seed germination under optimal conditions and seedling abundance between the two invasive trees and the native, in order to assess their sexual reproductive success. The exotic species did not differ from the native reference (all three species displaying high seed rain and undergoing seed losses up to 50% due to seed removal by the local fauna). Even if the exotic R. pseudoacacia showed a high percentage of empty and insect-parasited seeds along with a low seedling emergence and the exotic A. altissima was the species with more viable seeds and of higher germinability, no differences were found regarding these variables when comparing them with the native F. angustifolia. Unsuitable conditions might have hampered either seedling emergence and survival, as seedling abundance in the field was lower than expected in all species -especially in R. pseudoacacia-. Our results rather suggest that the sexual reproductive success was not higher in the exotic trees than in the native reference, but studies focusing on long-term recruitment would help to shed light on this issue.

  15. Small mammals in saltcedar (Tamarix ramosissima) - invaded and native riparian habitats of the western Great Basin

    USDA-ARS?s Scientific Manuscript database

    Invasive saltcedar species have replaced native riparian trees on numerous river systems throughout the western US, raising concerns about how this habitat conversion may affect wildlife. For periods ranging from 1-10 years, small mammal populations were monitored at six riparian sites impacted by s...

  16. Restoring riparian forests in the Missouri Ozarks

    Treesearch

    Kyle L. Steele; John M. Kabrick; Daniel C. Dey; Randy G. Jensen

    2013-01-01

    Restoring the function of riparian forest ecosystems has become a primary objective of many land management agencies throughout the central hardwood region, and consequently, much emphasis has been placed on planting native hardwood tree species in former bottomland agricultural fields. However, there is little information providing successful restoration techniques in...

  17. Overstory and regeneration dynamics in riparian management zones of northern Minnesota forested watersheds

    Treesearch

    Brian. Palik; Michelle. Martin; Erik. Zenner; Charles. Blinn; Randall. Kolka

    2012-01-01

    We quantified tree regeneration under different riparian management zone (RMZ) treatments along first-order streams in Minnesota, USA. A primary objective for long-term management of RMZs in the study region is to maintain some tree cover and promote establishment of later successional tree species and conifers. We also compared regeneration response to contrasting...

  18. Tree species differentiation using intensity data derived from leaf-on and leaf-off airborne laser scanner data

    Treesearch

    Sooyoung Kim; Robert J. McGaughey; Hans-Erik Andersen; Gerard Schreuder

    2009-01-01

    Tree species identification is important for a variety of natural resource management and monitoring activities including riparian buffer characterization, wildfire risk assessment, biodiversity monitoring, and wildlife habitat assessment. Intensity data recorded for each laser point in a LIDAR system is related to the spectral reflectance of the target material and...

  19. Advancement of tree species across ecotonal borders into non-forested ecosystems

    NASA Astrophysics Data System (ADS)

    Hanberry, Brice B.; Hansen, Mark H.

    2015-10-01

    Woody species are increasing in density, causing transition to more densely wooded vegetation states, and encroaching across ecotonal borders into non-forested ecosystems. We examined USDA Forest Service Forest Inventory and Analysis data to identify tree species that have expanded longitudinally in range, particularly into the central United States. We analyzed compositional differences within ecological regions (i.e., subsections) in eastern and western ranges of species using repeated measures ANOVA. We considered differences in outer ranges to indicate range expansion or contraction. We also estimated the shift in forest area and basal area relative to the center of the US and compared change in deciduous forest land cover. Out of 80 candidate species, 22 species expanded to the west, seven species expanded to the east, and five species expanded in both directions. During the survey interval, eastern tree species advanced into the predominantly non-forested ecosystems of central United States. Eastern cottonwood, eastern hophornbeam, eastern redbud, honeylocust, Osage-orange, pecan, red mulberry, and Shumard oak represent some of the species that are advancing eastern forest boundaries across forest-grassland ecotones into the central United States. Forest land has shifted towards the center of the continent, as has the center of mean tree basal area, and a simple comparison of deciduous cover change also displayed forest advancement into the central United States from eastern forests. The expanding species may spread along riparian migration corridors that provide protection from drought. Humans use the advancing tree species for windbreaks, fencerows, and ornamental landscaping, while wildlife spread fruit seeds, which results in unintentional assisted migration, or translocation, to drier sites across the region.

  20. Structure and tree species composition in different habitats of savanna used by indigenous people in the Northern Brazilian Amazon.

    PubMed

    de Oliveira, Rodrigo Leonardo Costa; Farias, Hugo Leonardo Sousa; Perdiz, Ricardo de Oliveira; Scudeller, Veridiana Vizoni; Imbrozio Barbosa, Reinaldo

    2017-01-01

    Woody plant diversity from the Amazonian savannas has been poorly quantified. In order to improve the knowledge on wood plants of these regional ecosystems, a tree inventory was carried out in four different habitats used by indigenous people living in the savanna areas of the Northern Brazilian Amazon. The habitats were divided into two types (or groups) of vegetation formations: forest (riparian forest, forest island, and buritizal = Mauritia palm formation) and non-forest (typical savanna). The inventory was carried out in two hectares established in the Darora Indigenous Community region, north of the state of Roraima. The typical savanna is the most densely populated area (709 stems ha -1 ); however, it has the lowest tree species richness (nine species, seven families) in relation to typical forest habitats: riparian forest (22 species, 13 families and 202 stems ha -1 ), forest islands (13 species, 10 families and 264 stems ha -1 ), and buritizal (19 species, 15 families and 600 stems ha -1 ). The tree structure (density and dominance) of the forest habitats located in the savanna areas studied in this work is smaller in relation to forest habitats derived from continuous areas of other parts of the Amazon. These environments are derived from Paleoclimatic fragmentation, and are currently affected by the impact of intensive use of natural resources as timberselective logging and some land conversion for agriculture.

  1. Relating geomorphic change and grazing to avian communities in riparian forests

    USGS Publications Warehouse

    Scott, M.L.; Skagen, S.K.; Merligliano, M.F.

    2003-01-01

    Avian conservation in riparian or bottomland forests requires an understanding of the physical and biotic factors that sustain the structural complexity of riparian vegetation. Riparian forests of western North America are dependent upon flow-related geomorphic processes necessary for establishment of new cottonwood and willow patches. In June 1995, we examined how fluvial geomorphic processes and long-term grazing influence the structural complexity of riparian vegetation and the abundance and diversity of breeding birds along the upper Missouri River in central Montana, a large, flow-regulated, and geomorphically constrained reach. Use by breeding birds was linked to fluvial geomorphic processes that influence the structure of these patches. Species richness and bird diversity increased with increasing structural complexity of vegetation (F1,32 = 75.49, p < 0.0001; F1,32 = 79.76, p < 0.0001, respectively). Bird species composition was significantly correlated with vegetation strata diversity (rs,33 = 0.98, p < 0.0001). Bird abundance in canopy and tall-shrub foraging guilds increased significantly with increasing tree cover and tall-shrub cover (F1,22 = 34.68, p < 0.0001; F1,20 = 22.22, p < 0.0001, respectively). Seventeen bird species, including five species of concern (e.g., Red-eyed Vireo [Vireo olivaceus]), were significantly associated (p < 0.10) with structurally complex forest patches, whereas only six bird species were significantly associated with structurally simple forest patches. We related the structural complexity of 34 riparian vegetation patches to geomorphic change, woody vegetation establishment, and grazing history over a 35-year post-dam period (1953–1988). The structural complexity of habitat patches was positively related to recent sediment accretion (t33 = 3.31, p = 0.002) and vegetation establishment (t20.7 = −3.63, p = 0.002) and negatively related to grazing activity (t19.6 = 3.75, p = 0.001). Avian conservation along rivers like the

  2. Comparing the Sexual Reproductive Success of Two Exotic Trees Invading Spanish Riparian Forests vs. a Native Reference

    PubMed Central

    2016-01-01

    A widely accepted hypothesis in invasion ecology is that invasive species have higher survival through the early stages of establishment than do non-invasive species. In this study we explore the hypothesis that the sexual reproductive success of the invasive trees Ailanthus altissima (Mill.) Swingle and Robinia pseudoacacia L. is higher than that of the native Fraxinus angustifolia Vahl., all three species coexisting within the riparian forests of Central Spain. We compared different stages of the early life cycle, namely seed rain, seed infestation by insects, seed removal by local fauna, seed germination under optimal conditions and seedling abundance between the two invasive trees and the native, in order to assess their sexual reproductive success. The exotic species did not differ from the native reference (all three species displaying high seed rain and undergoing seed losses up to 50% due to seed removal by the local fauna). Even if the exotic R. pseudoacacia showed a high percentage of empty and insect-parasited seeds along with a low seedling emergence and the exotic A. altissima was the species with more viable seeds and of higher germinability, no differences were found regarding these variables when comparing them with the native F. angustifolia. Unsuitable conditions might have hampered either seedling emergence and survival, as seedling abundance in the field was lower than expected in all species -especially in R. pseudoacacia-. Our results rather suggest that the sexual reproductive success was not higher in the exotic trees than in the native reference, but studies focusing on long-term recruitment would help to shed light on this issue. PMID:27529695

  3. Genetic and environmental influences on cold hardiness of native and introduced riparian trees

    Treesearch

    Jonathan M. Friedman; James E. Roelle; Brian S. Cade

    2012-01-01

    To explore latitudinal genetic variation in cold hardiness and leaf phenology, we planted a common garden of paired collections of native and introduced riparian trees sampled along a latitudinal gradient. The garden in Fort Collins, Colorado (latitude 40.6°N), included 681 native plains cottonwood (Populus deltoides subsp. monilifera) and introduced saltcedar (Tamarix...

  4. Eastern hemlock decline in riparian areas from Maine to Alabama

    Treesearch

    D.E. Evans; W.M. Aust; C.A. Dolloff; B.S. Templeton

    2010-01-01

    Eastern hemlock (Tsuga canadensis) is an integral component of Appalachian forest ecosystems and is valued for its ecological functions and aesthetic qualities. It is a foundation tree species in riparian systems and is known to moderate steam temperatures and base flow.

  5. Species Introductions and Their Cascading Impacts on Biotic Interactions in desert riparian ecosystems.

    PubMed

    Hultine, Kevin R; Bean, Dan W; Dudley, Tom L; Gehring, Catherine A

    2015-10-01

    Desert riparian ecosystems of North America are hotspots of biodiversity that support many sensitive species, and are in a region experiencing some of the highest rates of climatic alteration in North America. Fremont cottonwood, Populus fremontii, is a foundation tree species of this critical habitat, but it is threatened by global warming and regional drying, and by a non-native tree/shrub, Tamarix spp., all of which can disrupt the mutualism between P. fremontii and its beneficial mycorrhizal fungal communities. Specialist herbivorous leaf beetles (Diorhabda spp.) introduced for biocontrol of Tamarix are altering the relationship between this shrub and its environment. Repeated episodic feeding on Tamarix foliage by Diorhabda results in varying rates of dieback and mortality, depending on genetic variation in allocation of resources, growing conditions, and phenological synchrony between herbivore and host plant. In this article, we review the complex interaction between climatic change and species introductions and their combined impacts on P. fremontii and their associated communities. We anticipate that (1) certain genotypes of P. fremontii will respond more favorably to the presence of Tamarix and to climatic change due to varying selection pressures to cope with competition and stress; (2) the ongoing evolution of Diorhabda's life cycle timing will continue to facilitate its expansion in North America, and will over time enhance herbivore impact to Tamarix; (3) defoliation by Diorhabda will reduce the negative impact of Tamarix on P. fremontii associations with mycorrhizal fungi; and (4) spatial variability in climate and climatic change will modify the capacity for Tamarix to survive episodic defoliation by Diorhabda, thereby altering the relationship between Tamarix and P. fremontii, and its associated mycorrhizal fungal communities. Given the complex biotic/abiotic interactions outlined in this review, conservation biologists and riparian ecosystem

  6. Slope variation and population structure of tree species from different ecological groups in South Brazil.

    PubMed

    Bianchini, Edmilson; Garcia, Cristina C; Pimenta, José A; Torezan, José M D

    2010-09-01

    Size structure and spatial arrangement of 13 abundant tree species were determined in a riparian forest fragment in Paraná State, South Brazil (23°16'S and 51°01'W). The studied species were Aspidosperma polyneuron Müll. Arg., Astronium graveolens Jacq. and Gallesia integrifolia (Spreng) Harms (emergent species); Alseis floribunda Schott, Ruprechtia laxiflora Meisn. and Bougainvillea spectabilis Willd. (shade-intolerant canopy species); Machaerium paraguariense Hassl, Myroxylum peruiferum L. and Chrysophyllum gonocarpum (Mart. & Eichler ex Miq.) Engl. (shade-tolerant canopy species); Sorocea bonplandii (Baill.) Bürger, Trichilia casaretti C. Dc, Trichilia catigua A. Juss. and Actinostemon concolor (Spreng.) Müll. Arg. (understory small trees species). Height and diameter structures and basal area of species were analyzed. Spatial patterns and slope correlation were analyzed by Moran's / spatial autocorrelation coefficient and partial Mantel test, respectively. The emergent and small understory species showed the highest and the lowest variations in height, diameter and basal area. Size distribution differed among emergent species and also among canopy shade-intolerant species. The spatial pattern ranged among species in all groups, except in understory small tree species. The slope was correlated with spatial pattern for A. polyneuron, A. graveolens, A. floribunda, R. laxiflora, M. peruiferum and T. casaretti. The results indicated that most species occurred in specific places, suggesting that niche differentiation can be an important factor in structuring the tree community.

  7. Conservation of soil, water and nutrients in surface runoff using riparian plant species.

    PubMed

    Srivastava, Prabodh; Singh, Shipra

    2012-01-01

    Three riparian plant species viz. Cynodon dactylon (L.) Pers., Saccharum bengalensis Retz. and Parthenium hysterophorus L. were selected from the riparian zone of Kali river at Aligarh to conduct the surface runoff experiment to compare their conservation efficiencies for soil, water and nutrients (phosphorus and nitrogen). Experimental plots were prepared on artificial slopes in botanical garden and on natural slopes on study site. Selected riparian plant species showed the range of conservation values for soil and water from 47.11 to 95.22% and 44.06 to 72.50%, respectively on artificial slope and from 44.53 to 95.33% and 48.36 to 73.15%, respectively on natural slope. Conservation values for phosphorus and nitrogen ranged from 40.83 to 88.89% and 59.78 to 82.22%, respectively on artificial slope and from 50.01 to 90.16% and 68.07 to 85.62%, respectively on natural slope. It was observed that Cynodon dactylon was the most efficient riparian species in conservation of soil, water and nutrients in surface runoff.

  8. Plant species distribution in relation to water-table depth and soil redox potential in montane riparian meadows

    Treesearch

    Kathleen A. Dwire; J. Boone Kauffman; John E. Baham

    2006-01-01

    The distribution of riparian plant species is largely driven by hydrologic and soil variables, and riparian plant communities frequently occur in relatively distinct zones along streamside elevational and soil textural gradients. In two montane meadows in northeast Oregon, USA, we examined plant species distribution in three riparian plant communities¡ªdefined as wet,...

  9. Revisiting streamside trees that do not use stream water: can the two water worlds hypothesis and snowpack isotopic effects explain a missing water source?: Riparian tree water sources

    DOE PAGES

    Bowling, David R.; Schulze, Emily S.; Hall, Steven J.

    2016-10-14

    We revisit a classic ecohydrological study that showed streamside riparian trees in a semiarid mountain catchment did not use perennial stream water. The original study suggested that mature individuals of Acer negundo, Acer grandidentatum, and other species were dependent on water from “deeper strata,” possibly groundwater. We used a dual stable isotope approach (δ 18O and δ 2H) to further examine the water sources of these trees. We tested the hypothesis that groundwater was the main tree water source, but found that neither groundwater nor stream water matched the isotope composition of xylem water during two growing seasons. Soil watermore » (0–1 m depth) was closest to and periodically overlapped with xylem water isotope composition, but overall, xylem water was isotopically enriched compared to all measured water sources. The “two water worlds” hypothesis postulates that soil water comprises isotopically distinct mobile and less mobile pools that do not mix, potentially explaining this disparity. We further hypothesized that isotopic effects during snowpack metamorphosis impart a distinct isotope signature to the less mobile soil water that supplies summer transpiration. Depth trends in water isotopes following snowmelt were consistent with the two water worlds hypothesis, but snow metamorphic isotope effects could not explain the highly enriched xylem water. Thus, the dual isotope approach did not unambiguously determine the water source(s) of these riparian trees. Further exploration of physical, geochemical, and biological mechanisms of water isotope fractionation and partitioning is necessary to resolve these data, highlighting critical challenges in the isotopic determination of plant water sources.« less

  10. Revisiting streamside trees that do not use stream water: can the two water worlds hypothesis and snowpack isotopic effects explain a missing water source?: Riparian tree water sources

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Bowling, David R.; Schulze, Emily S.; Hall, Steven J.

    We revisit a classic ecohydrological study that showed streamside riparian trees in a semiarid mountain catchment did not use perennial stream water. The original study suggested that mature individuals of Acer negundo, Acer grandidentatum, and other species were dependent on water from “deeper strata,” possibly groundwater. We used a dual stable isotope approach (δ 18O and δ 2H) to further examine the water sources of these trees. We tested the hypothesis that groundwater was the main tree water source, but found that neither groundwater nor stream water matched the isotope composition of xylem water during two growing seasons. Soil watermore » (0–1 m depth) was closest to and periodically overlapped with xylem water isotope composition, but overall, xylem water was isotopically enriched compared to all measured water sources. The “two water worlds” hypothesis postulates that soil water comprises isotopically distinct mobile and less mobile pools that do not mix, potentially explaining this disparity. We further hypothesized that isotopic effects during snowpack metamorphosis impart a distinct isotope signature to the less mobile soil water that supplies summer transpiration. Depth trends in water isotopes following snowmelt were consistent with the two water worlds hypothesis, but snow metamorphic isotope effects could not explain the highly enriched xylem water. Thus, the dual isotope approach did not unambiguously determine the water source(s) of these riparian trees. Further exploration of physical, geochemical, and biological mechanisms of water isotope fractionation and partitioning is necessary to resolve these data, highlighting critical challenges in the isotopic determination of plant water sources.« less

  11. Effects of thinning on transpiration by riparian buffer trees in response to advection and solar radiation

    USDA-ARS?s Scientific Manuscript database

    Advective energy occurring in edge environments may increase tree water use. In humid agricultural landscapes, advection-enhanced transpiration in riparian buffers may provide hydrologic regulation; however, research in humid environments is lacking. The objectives of this study were to determine ho...

  12. EAB induced tree mortality impacts ecosystem respiration and tree water use in an experimental forest

    Treesearch

    Charles E. Flower; Douglas J. Lynch; Kathleen S. Knight; Miquel A. Gonzales-Meler

    2011-01-01

    The invasive emerald ash borer (Agrilus planipennis Fairmaire, EAB) has been spreading across the forest landscape of the Midwest resulting in the rapid decline of ash trees (Fraxinus spp.). Ash trees represent a dominant riparian species in temperate deciduous forests of the Eastern United States (USDA FIA Database). Prior...

  13. The Phytophthora species assemblage and diversity in riparian alder ecosystems of western Oregon, USA.

    PubMed

    Sims, Laura Lee; Sutton, Wendy; Reeser, Paul; Hansen, Everett M

    2015-01-01

    Phytophthora species were systematically sampled, isolated, identified and compared for presence in streams, soil and roots of alder (Alnus species) dominated riparian ecosystems in western Oregon. We describe the species assemblage and evaluate Phytophthora diversity associated with alder. We recovered 1250 isolates of 20 Phytophthora species. Only three species were recovered from all substrates (streams, soil, alder roots): P. gonapodyides, the informally described "P. taxon Pgchlamydo", and P. siskiyouensis. P. alni ssp. uniformis along with five other species not previously recovered in Oregon forests are included in the assemblage: P.citricola s.l., P. gregata, P. gallica, P. nicotianae and P. parsiana. Phytophthora species diversity was greatest in downstream riparian locations. There was no significant difference in species diversity comparing soil and unwashed roots (the rhizosphere) to stream water. There was a difference between the predominating species from the rhizosphere compared to stream water. The most numerous species was the informally described "P. taxon Oaksoil", which was mainly recovered from, and most predominant in, stream water. The most common species from riparian forest soils and alder root systems was P. gonapodyides. © 2015 by The Mycological Society of America.

  14. Influence of Riparian Tree Phenology on Lower Colorado River Spring-Migrating Birds: Implications of Flower Cueing

    USGS Publications Warehouse

    McGrath, Laura J.; van Riper, Charles

    2005-01-01

    Executive Summary Neotropical migrant birds make choices about which habitats are most likely to provide successful foraging locations during migration, but little is known about how these birds recognize and process environmental clues that indicate the presence of prey species. Aspects of tree phenology, notably flowering of trees along the lower Colorado River corridor, coincide with the migratory stopovers of leaf-gleaning insectivorous songbirds and may be an important indicator of arthropod prey species availability. Shifting tree flowering and leaf flush during the spring migration period presents avian insectivores with an assortment of foraging opportunities. During two field seasons at Cibola National Wildlife Refuge in southwestern Arizona, we examined riparian tree species to test whether leaf-gleaning insectivorous birds are attracted to the flowering condition of trees in choosing foraging sites. We predicted that flowering trees would host more insect prey resources, would thus show increased visit rates, length of stays and attack ratios of migrant avian insectivores, and that those arthropods would be found in the stomach contents of the birds. Paired trees of honey mesquite (Prosopis glandulosa), displaying heavy and light degrees of flowering were observed to test these predictions. To test whether birds are tracking arthropods directly or are using flowers as a proximate cue, we removed flowers from selected trees and paired these treated trees with neighboring high flowering trees, which served as controls. Avian foraging behavior, avian diets, arthropods, and phenology data were collected at the same time to control for temporal differences in insect availability, plant phenology, and differences in stopover arrivals of birds. We documented five patterns from this study: 1) Higher abundance and richness of arthropods were found on honey mesquite trees with greater numbers of flowers. 2) Arthropod abundance and richness increased as flowering

  15. RELATIONSHIPS OF ALIEN PLANT SPECIES ABUNDANCE TO RIPARIAN VEGETATION, ENVIRONMENT, AND DISTURBANCE

    EPA Science Inventory

    Riparian ecosystems are often invaded by alien species. We evaluated vegetation, environment, and disturbance conditions and their interrelationships with alien species abundance along reaches of 29 streams in eastern Oregon, USA. Using flexible-BETA clustering, indicator species...

  16. Effects of thinning on transpiration by riparian buffer trees in response to advection and solar radiation

    USDA-ARS?s Scientific Manuscript database

    Advective energy occurring in edge environments may increase tree water use (e.g., latent heat loss, LE > net radiation, Rn). In humid agricultural landscapes, advection-enhanced transpiration in riparian buffers may provide hydrologic regulation and flood control benefits; however, research in humi...

  17. The Inference of Gene Trees with Species Trees

    PubMed Central

    Szöllősi, Gergely J.; Tannier, Eric; Daubin, Vincent; Boussau, Bastien

    2015-01-01

    This article reviews the various models that have been used to describe the relationships between gene trees and species trees. Molecular phylogeny has focused mainly on improving models for the reconstruction of gene trees based on sequence alignments. Yet, most phylogeneticists seek to reveal the history of species. Although the histories of genes and species are tightly linked, they are seldom identical, because genes duplicate, are lost or horizontally transferred, and because alleles can coexist in populations for periods that may span several speciation events. Building models describing the relationship between gene and species trees can thus improve the reconstruction of gene trees when a species tree is known, and vice versa. Several approaches have been proposed to solve the problem in one direction or the other, but in general neither gene trees nor species trees are known. Only a few studies have attempted to jointly infer gene trees and species trees. These models account for gene duplication and loss, transfer or incomplete lineage sorting. Some of them consider several types of events together, but none exists currently that considers the full repertoire of processes that generate gene trees along the species tree. Simulations as well as empirical studies on genomic data show that combining gene tree–species tree models with models of sequence evolution improves gene tree reconstruction. In turn, these better gene trees provide a more reliable basis for studying genome evolution or reconstructing ancestral chromosomes and ancestral gene sequences. We predict that gene tree–species tree methods that can deal with genomic data sets will be instrumental to advancing our understanding of genomic evolution. PMID:25070970

  18. Russian Olive fruit production in shelterbelt and riparian populations in Montana

    USDA-ARS?s Scientific Manuscript database

    Russian olive (Eleagnus angustifolia) is a conflict tree species: it is invasive in riparian habitats throughout the western U.S., but is often considered desirable in uplands of the northern Great Plains (e.g. soil stabilization and providing windbreaks). Desirable and invasive populations of Russi...

  19. An Assessment of the Vulnerability of Native Phreatophytes to Replacement by Invasive Species in a Mid-Continent Riparian Setting

    NASA Astrophysics Data System (ADS)

    Shea, J. A.; Bauer, J. P.; Keller, J.; Butler, J. J.; Kluitenberg, G. J.; Whittemore, D. O.; Jin, W.; Loheide, S. P.

    2005-12-01

    In many areas of the Great Plains region of the United States, non-native phreatophytes, particularly the salt cedar (Tamarix spp.) and the Russian olive (Elaeagnus angustifolia L.), have become the dominant riparian-zone vegetation. The factors that contribute to the establishment of invasive species are under investigation at the Larned Research Site (LRS), located in the riparian corridor of the Arkansas River in south-central Kansas. The riparian zone at the LRS consists of native vegetation; the major phreatophytes at the site are the cottonwood (Populus deltoids), willow (Salix spp.), and mulberry (Morus spp.). The LRS has been the focus of extensive research on stream-aquifer interactions, so considerable data have been collected on the shallow groundwater flow system underlying the area. On-site instrumentation includes 18 wells equipped for continuous water-level monitoring, eight neutron-probe access tubes for observation of soil moisture, and a weather station. Inventories of all trees larger than 0.08 m in diameter at breast height (1266 trunks) were conducted in a portion of the LRS in the summers of 2002 and 2005, and sapflow data were collected in the summers of 2003 and 2004. Water-level data from mid-August 2002 to the present show diurnal fluctuations during the growing season superimposed on a general water-level decline. These diurnal fluctuations are a diagnostic indicator of phreatophyte activity, while the declining water levels can be attributed to regional irrigation pumping during periods of little recharge from streamflow. Estimates of groundwater consumption by phreatophytes, obtained using the approach of White (1932), show a year-to-year decrease in water use, associated with a falling water table; however, potential evapotranspiration values calculated from meteorological data did not decrease significantly. Groundwater consumption estimates using the White method are consistent with sapflow and soil-moisture data. In addition

  20. The role of red alder in riparian forest structure along headwater streams in southeastern Alaska

    USGS Publications Warehouse

    Orlikowska, E.H.; Deal, R.L.; Hennon, P.E.; Wipfli, M.S.

    2004-01-01

    We assessed the influence of red alder on tree species composition, stand density, tree size distribution, tree mortality, and potential for producing large conifers, in 38-42 yr old riparian forests along 13 headwater streams in the Maybeso and Harris watersheds on Prince of Wales Island, Alaska. Red alder ranged from 0 to 53% of the total live basal area of the stands. Tree density, basal area of live and dead trees, and mean diameter of live conifers were not significantly related to the percent of alder as a proportion of total stand live basal area within these riparian forests. The mean diameter of the 100 largest conifers per hectare (the largest trees) was similar among different sites and appeared unrelated to the amount of alder in the stands. The mean diameter of dead conifers increased slightly with increasing proportion of red alder. Most dead trees were small and died standing. Red alder was much more concentrated immediately along stream margins (within 0-1 m distance from the stream bank vs. > 1 m). The presence of red alder did not inhibit the production of large-diameter conifers, and both alder and conifers provided small woody debris for fishless headwater streams in southeastern Alaska. Red alder is an important structural component of young-growth riparian stands.

  1. Plant biomass and species composition along an environmental gradient in montane riparian meadows

    Treesearch

    Kathleen A. Dwire; J. Boone Kauffman; E. N. Jack Brookshire; John E. Baham

    2004-01-01

    In riparian meadows, narrow zonation of the dominant vegetation frequently occurs along the elevational gradient from the stream edge to the floodplain terrace. We measured plant species composition and above- and belowground biomass in three riparian plant communities - a priori defined as wet, moist, and dry meadow - along short streamside topographic gradients in...

  2. Contrasting patterns of groundwater evapotranspiration in grass and tree dominated riparian zones of a temperate agricultural catchment

    NASA Astrophysics Data System (ADS)

    Satchithanantham, Sanjayan; Wilson, Henry F.; Glenn, Aaron J.

    2017-06-01

    Consumptive use of shallow groundwater by phreatophytic vegetation is a significant part of the water budget in many regions, particularly in riparian areas. The influence of vegetation type on groundwater level fluctuations and evapotranspiration has rarely been quantified for contrasting plant communities concurrently although it has implications for downstream water yield and quality. Hourly groundwater evapotranspiration (ETG) rates were estimated for grass and tree riparian vegetation in southwestern Manitoba, Canada using two modified White methods. Groundwater table depth was monitored in four 21 m transects of five 3 m deep monitoring wells in the riparian zone of a stream reach including tree (Acer negundo; boxelder) and grass (Bromus inermis; smooth brome) dominated segments. The average depths to the groundwater table from the surface were 1.4 m and 1 m for the tree and grass segments, respectively, over the two-year study. During rain free periods of the growing season ETG was estimated for a total of 70 days in 2014 and 79 days in 2015 when diurnal fluctuations were present in groundwater level. Diurnal groundwater level fluctuations were observed during dry periods under both segments, however, ETG was significantly higher (p < 0.001) under trees compared to grass cover in 2014 (a wet year with 72% higher than normal growing season precipitation) and 2015 (a drier year with 15% higher than normal growing season precipitation). The two methods used to estimate ETG produced similar daily and seasonal values for the two segments. In 2014, total ETG was approximately 50% (148 mm) and 100% (282-285 mm) of reference evapotranspiration (ETref, 281 mm) for the grass and tree segments, respectively. In 2015, total ETG was approximately 40% (106-127 mm) and 120% (369-374 mm) of ETref (307 mm) for the grass and tree segments, respectively. Results from the study show the tree dominated portions of the stream reach consumed approximately 2.4 ML ha-1 yr-1 more

  3. Riparian restoration in the Southwest: Species selection, propagation, planting methods, and case studies

    Treesearch

    David Dreesen; John Harrington; Tom Subirge; Pete Stewart; Greg Fenchel

    2002-01-01

    Riparian plant communities, though small in overall area, are among the most valuable natural areas in the Southwest. The causes of degradation of southwestern riparian zones range from excessive cattle and elk grazing in montane watersheds to invasive woody exotic species and lack of natural flooding in the cottonwood forests, "bosque," of low elevation...

  4. EXPOSURE OF RIPARIAN ECOSYSTEMS TO NON-INDIGENOUS PLANT SPECIES: A CONCEPTUAL RISK ASSESSMENT MODEL

    EPA Science Inventory

    Biological invasions are one of the foremost threats to the integrity of riparian

    ecosystems worldwide, but little is known regarding the long-term invasion dynamics of

    non-indigenous plant species (NIPS) along rivers. Riparian ecosystems are of great

    importa...

  5. Monitoring vegetation water uptake in a semiarid riparian corridor

    NASA Astrophysics Data System (ADS)

    Robinson, J.; Ochoa, C. G.; Leonard, J.

    2015-12-01

    With a changing global climate and growing demand for water throughout the world, responsible and sustainable land and water resource management practices are becoming increasingly important. Accounting for the amount of water used by riparian vegetation is a critical element for better managing water resources in arid and semiarid environments. The objective of this study was to determine water uptake by selected riparian vegetative species in a semiarid riparian corridor in North-Central Oregon. Exo-skin sap flow sensors (Dynamax, Houston, TX, U.S.A.) were used to measure sap flux in red alder (Alnus rubra) trees, the dominant overstory vegetation at the field site. Xylem sap flow data was collected from selected trees at the field site and in a greenhouse setting. Transpiration rates were determined based on an energy balance method, which makes it possible to estimate the mass flow of sap by measuring the velocity of electrical heat pulses through the plant stem. Preliminary field results indicate that red alder tree branches of about 1 inch diameter transpire between 2 and 6 kg of water/day. Higher transpiration rates of up to 7.3 kg of water/day were observed under greenhouse conditions. Streamflow and stream water temperature, vegetation characteristics, and meteorological data were analyzed in conjunction with transpiration data. Results of this study provide insight on riparian vegetation water consumption in water scarce ecosystems. This study is part of an overarching project focused on climate-vegetation interactions and ecohydrologic processes in arid and semiarid landscapes.

  6. Methane Fluxes at the Tree Stem, Soil, and Ecosystem-scales in a Cottonwood Riparian Forest

    NASA Astrophysics Data System (ADS)

    Flanagan, L. B.; Nikkel, D. J.; Scherloski, L. M.; Tkach, R. E.; Rood, S. B.

    2017-12-01

    Trees can emit methane to the atmosphere that is produced by microbes inside their decaying stems or by taking up and releasing methane that is produced by microbes in adjacent, anoxic soil layers. The significance of these two methane production pathways for possible net release to the atmosphere depends on the magnitude of simultaneous oxidation of atmospheric methane that occurs in well-aerated, shallow soil zones. In order to quantify the significance of these processes, we made methane flux measurements using the eddy covariance technique at the ecosystem-scale and via chamber-based methods applied on the soil surface and on tree stems in a riparian cottonwood ecosystem in southern Alberta that was dominated by Populus tree species and their natural hybrids. Tree stem methane fluxes varied greatly among individual Populus trees and changed seasonally, with peak growing season average values of 4 nmol m-2 s-1 (tree surface area basis). When scaled to the ecosystem, the tree stem methane emissions (0.9 nmol m-2 s-1, ground area basis) were slightly higher than average soil surface methane uptake rates (-0.8 nmol m-2 s-1). In addition, we observed regular nighttime increases in methane concentration within the forest boundary layer (by 300 nmol mol-1 on average at 22 m height during July). The majority of the methane concentration build-up was flushed from the ecosystem to the well-mixed atmosphere, with combined eddy covariance and air column storage fluxes reaching values of 70-80 nmol m-2 s-1 for approximately one hour after sunrise. Daily average net methane emission rates at the ecosystem-scale were 4.4 nmol m-2 s-1 during July. Additional lab studies demonstrated that tree stem methane was produced via the CO2-reduction pathway, as tissue in the central stem of living Populus trees was being decomposed. This study demonstrated net methane emission from an upland, cottonwood forest ecosystem, resulting from microbe methane production in tree stems that

  7. A comparison of small-mammal communities in a desert riparian floodplain

    USGS Publications Warehouse

    Ellison, Laura E.; van Riper, Charles

    1998-01-01

    We compared small-mammal communities between inactive floodplain and actively flooded terraces of riparian habitat in the Verde Valley of central Arizona. We used species diversity, abundance, weight of adult males, number of juveniles, number of reproductively active individuals, longevity, residency status, and patterns of microhabitat use to compare the two communities. Although abundances of small mammals tended to be higher in the active floodplain, species diversity was greater in the inactive floodplain. Results were inconsistent with our initial prediction that actively flooded riparian habitat acts as a species source, whereas inactive floodplain acts as a sink or dispersal site for small mammals. Within each habitat type, we found evidence of significant microhabitat separation among the three most abundant small-mammal species (Peromyscus boylii, P. eremicus, and Neotoma albigula). Percent cover by annual and perennial grasses and shrubs, substrate, and frequency of shrubs, trees, and debris were significant determinants of small-mammal distribution within a habitat type. We found that the three most abundant species selected a nonrandom subset of available habitat. Nonrandom use of habitat and microhabitat separation were the two most important mechanisms structuring small-mammal communities in riparian habitat of central Arizona.

  8. Relationships among hydrogeomorphic processes and the distribution, age and stand characteristics of woody species in Great Basin upland riparian areas

    Treesearch

    Molly Jean Ferry

    2010-01-01

    Riparian ecosystems often constitute less than one percent of the central Great Basin landscape but provide critical ecosystem services. Shrubs and trees are fundamental components of these riparian ecosystems that can provide stabilization of sediment and resistance to stream down-cutting. This can promotes ground-water recharge and maintenance of elevated water...

  9. Perspectives on Screening Winter-Flood-Tolerant Woody Species in the Riparian Protection Forests of the Three Gorges Reservoir

    PubMed Central

    Yang, Fan; Wang, Yong; Chan, Zhulong

    2014-01-01

    The establishment of riparian protection forests in the Three Gorges Reservoir (TGR) is an ideal measure to cope with the eco-environmental problems of the water-level fluctuation zone (WLFZ). Thus, the information for screening winter-flood-tolerant woody plant species is useful for the recovery and re-establishment of the riparian protection forests in the TGR WLFZ. Therefore, we discussed the possibilities of constructing and popularizing riparian protection forests in the TGR WLFZ from several aspects, including the woody plant species distribution in the WLFZ, the survival rate analyses of suitable candidate woody species under controlled flooding conditions, the survival rate investigation of some woody plant species planted in the TGR WLFZ, and the physiological responses of some woody plant species during the recovery stage after winter floods. The results of woody species investigation showed that most woody plant species that existed as annual seedlings in the TGR WLFZ are not suitable candidates for the riparian protection forests. However, arbor species (e.g., Salix matsudana, Populus×canadensis, Morus alba, Pterocarya stenoptera, Taxodium ascendens, and Metasequoia glyptostroboides) and shrub species (e.g., Salix variegata, Distylium chinensis, Lycium chinense, Myricaria laxiflora, and Rosa multiflora) might be considered suitable candidates for the riparian protection forests in the TGR WLFZ by survival rate analyses under controlled winter flooding conditions, and survival rate investigations of woody plant species planted in the TGR WLFZ, respectively. Physiological analyses showed that P.×canadensis, M. alba, L. chinense, and S. variegata could develop specific self-repairing mechanisms to stimulate biomass accumulation and carbohydrate synthesis via the increases in chlorophyll pigments and photosynthesis during recovery after winter floods. Our results suggested these woody plant species could endure the winter flooding stress and recover well

  10. Perspectives on screening winter-flood-tolerant woody species in the riparian protection forests of the three gorges reservoir.

    PubMed

    Yang, Fan; Wang, Yong; Chan, Zhulong

    2014-01-01

    The establishment of riparian protection forests in the Three Gorges Reservoir (TGR) is an ideal measure to cope with the eco-environmental problems of the water-level fluctuation zone (WLFZ). Thus, the information for screening winter-flood-tolerant woody plant species is useful for the recovery and re-establishment of the riparian protection forests in the TGR WLFZ. Therefore, we discussed the possibilities of constructing and popularizing riparian protection forests in the TGR WLFZ from several aspects, including the woody plant species distribution in the WLFZ, the survival rate analyses of suitable candidate woody species under controlled flooding conditions, the survival rate investigation of some woody plant species planted in the TGR WLFZ, and the physiological responses of some woody plant species during the recovery stage after winter floods. The results of woody species investigation showed that most woody plant species that existed as annual seedlings in the TGR WLFZ are not suitable candidates for the riparian protection forests. However, arbor species (e.g., Salix matsudana, Populus×canadensis, Morus alba, Pterocarya stenoptera, Taxodium ascendens, and Metasequoia glyptostroboides) and shrub species (e.g., Salix variegata, Distylium chinensis, Lycium chinense, Myricaria laxiflora, and Rosa multiflora) might be considered suitable candidates for the riparian protection forests in the TGR WLFZ by survival rate analyses under controlled winter flooding conditions, and survival rate investigations of woody plant species planted in the TGR WLFZ, respectively. Physiological analyses showed that P.×canadensis, M. alba, L. chinense, and S. variegata could develop specific self-repairing mechanisms to stimulate biomass accumulation and carbohydrate synthesis via the increases in chlorophyll pigments and photosynthesis during recovery after winter floods. Our results suggested these woody plant species could endure the winter flooding stress and recover well

  11. Invasive European bird cherry disrupts stream-riparian linkages: effects on terrestrial invertebrate prey subsidies for juvenile coho salmon

    USGS Publications Warehouse

    Roon, David A.; Wipfli, Mark S.; Wurtz, Tricia L.; Blanchard, Arny L.

    2016-01-01

    The spread of invasive species in riparian forests has the potential to affect both terrestrial and aquatic organisms linked through cross-ecosystem resource subsidies. However, this potential had not been explored in regards to terrestrial prey subsidies for stream fishes. To address this, we examined the effects of an invasive riparian tree, European bird cherry (EBC, Prunus padus), spreading along urban Alaskan salmon streams, by collecting terrestrial invertebrates present on the foliage of riparian trees, their subsidies to streams, and their consumption by juvenile coho salmon (Oncorhynchus kisutch). Riparian EBC supported four to six times less terrestrial invertebrate biomass on its foliage and contributed two to three times lower subsidies relative to native deciduous trees. This reduction in terrestrial invertebrate biomass was consistent between two watersheds over 2 years. In spite of this reduction in terrestrial prey resource input, juvenile coho salmon consumed similar levels of terrestrial invertebrates in stream reaches bordered by EBC. Although we did not see ecological effects extending to stream salmonids, reduced terrestrial prey subsidies to streams are likely to have negative consequences as EBC continues to spread.

  12. Genetic and environmental influences on cold hardiness of native and introduced riparian trees

    USGS Publications Warehouse

    Friedman, Jonathan M.; Roelle, James E.; Cade, Brian S.

    2012-01-01

    To explore latitudinal genetic variation in cold hardiness and leaf phenology, we planted a common garden of paired collections of native and introduced riparian trees sampled along a latitudinal gradient. The garden in Fort Collins, Colorado (latitude 40.6°N), included 681 native plains cottonwood (Populus deltoides subsp. monilifera) and introduced saltcedar (Tamarix ramosissima, T. chinensis, and hybrids) collected from 15 sites from 29.2 to 47.6°N in the central United States. In the common garden, both species showed latitudinal variation in fall, but not spring, leaf phenology. This suggests that latitudinal gradient field observations in fall phenology are a result, at least in part, of the inherited variation in the critical photoperiod. Conversely, the latitudinal gradient field observations in spring phenology are largely a plastic response to the temperature gradient. Populations from higher latitudes exhibited earlier bud set and leaf senescence. Cold hardiness varied latitudinally in both fall and spring for both species. Although cottonwood was hardier than saltcedar in midwinter, the reverse was true in late fall and early spring. The latitudinal variation in fall phenology and cold hardiness of saltcedar appears to have developed as a result of multiple introductions of genetically distinct populations, hybridization, and natural selection in the 150 years since introduction.

  13. Seeing the landscape for the trees: Metrics to guide riparian shade management in river catchments

    NASA Astrophysics Data System (ADS)

    Johnson, Matthew F.; Wilby, Robert L.

    2015-05-01

    Rising water temperature (Tw) due to anthropogenic climate change may have serious consequences for river ecosystems. Conservation and/or expansion of riparian shade could counter warming and buy time for ecosystems to adapt. However, sensitivity of river reaches to direct solar radiation is highly heterogeneous in space and time, so benefits of shading are also expected to be site specific. We use a network of high-resolution temperature measurements from two upland rivers in the UK, in conjunction with topographic shade modeling, to assess the relative significance of landscape and riparian shade to the thermal behavior of river reaches. Trees occupy 7% of the study catchments (comparable with the UK national average) yet shade covers 52% of the area and is concentrated along river corridors. Riparian shade is most beneficial for managing Tw at distances 5-20 km downstream from the source of the rivers where discharge is modest, flow is dominated by near-surface hydrological pathways, there is a wide floodplain with little landscape shade, and where cumulative solar exposure times are sufficient to affect Tw. For the rivers studied, we find that approximately 0.5 km of complete shade is necessary to off-set Tw by 1°C during July (the month with peak Tw) at a headwater site; whereas 1.1 km of shade is required 25 km downstream. Further research is needed to assess the integrated effect of future changes in air temperature, sunshine duration, direct solar radiation, and downward diffuse radiation on Tw to help tree planting schemes achieve intended outcomes.

  14. Biogeomorphic feedbacks within riparian corridors: the role of positive interactions between riparian plants

    NASA Astrophysics Data System (ADS)

    Corenblit, Dov; Steiger, Johannes; Till-Bottraud, Irène

    2017-04-01

    Riparian vegetation affects hydrogeomorphic processes and leads to the construction of wooded fluvial landforms within riparian corridors. Multiple plants form dense multi- and mono-specific stands that enhance plant resistance as grouped plants are less prone to be uprooted than free-standing individuals. Riparian plants which grow in dense stands also enhance their role as ecosystem engineers through the trapping of sediment, organic matter and nutrients. The wooded biogeomorphic landforms which originate from the effect of vegetation on geomorphology lead in return to an improved capacity of the plants to survive, exploit resources, and reach sexual maturity in the intervals between destructive floods. Thus, these vegetated biogeomorphic landforms likely represent a positive niche construction of riparian plants. The nature and intensity of biotic interactions between riparian plants of different species (inter-specific) or the same species (intra-specific) which form dense stands and construct together the niche remain unclear. We strongly suspect that indirect inter-specific positive interactions (facilitation) occur between plants but that more direct intra-specific interactions, such as cooperation and altruism, also operate during the niche construction process. Our aim is to propose an original theoretical framework of inter and intra-specific positive interactions between riparian plants. We suggest that positive interactions between riparian plants are maximized in river reaches with an intermediate level of hydrogeomorphic disturbance. During establishment, plants that grow within dense stands improve their survival and growth because individuals protect each other from shear stress. In addition to the improved capacity to trap mineral and organic matter, individuals which constitute the dense stand can cooperate to mutually support a mycorrhizal fungi network that will connect plants, soil and ground water and influence nutrient transfer, cycling and

  15. Impacts of removing Chinese privet from riparian forests on plant communities and tree growth five years later

    Treesearch

    Jacob R. Hudson; James L. Hanula; Scott Horn

    2014-01-01

    An invasive shrub, Chinese privet (Ligustrum sinense Lour.), was removed from heavily infested riparian forests in the Georgia Piedmont in 2005 by mulching machine or chainsaw felling. Subsequent herbicide treatment eliminated almost all privet by 2007. Recovery of plant communities, return of Chinese privet, and canopy tree growth were measured on...

  16. A premilinary survey of tree species in the habitat of Rafflesia at Sungai Kenau, Raub, Pahang, Malaysia

    NASA Astrophysics Data System (ADS)

    Juhari, Mohd Afiq Aizat; Adam, Jumaat Haji; Ishak, Siti Amirah

    2016-11-01

    A study was conducted to determine the floristic composition of the Sungai Kenau, Raub, Pahang. The study area was located in the lowland dipterocarp forest where logging and forest opening were common in Malaysia and the area have a population of Rafflesia. The method used was plotting with size of 100 m ×10 m for each plot. Each plot was then divided into 10 subplots measuring 10 m ×10 m. All trees with diameter at breast height (DBH) of 5 cm and above was measured and recorded. Results showed that there were 623 individual trees in an area of 0.5 hectares which includes 50 families, 98 genera and 140 species. Annonaceae was the most dominant family in the study area, while the dominant species in the entire study area was Saraca cauliflora (Leguminosae). The contribution of this study were the presence of tree species from Macaranga which can be used as biological indicator to detect the presence of an open area in the forest while Saraca cauliflora can also be a biological indicator that indicated the present of riparian areas.

  17. Ecophysiological Competence of Populus alba L., Fraxinus angustifolia Vahl., and Crataegus monogyna Jacq. Used in Plantations for the Recovery of Riparian Vegetation

    NASA Astrophysics Data System (ADS)

    Manzanera, Jose A.; Martínez-Chacón, Maria F.

    2007-12-01

    In many semi-arid environments of Mediterranean ecosystems, white poplar ( Populus alba L.) is the dominant riparian tree and has been used to recover degraded areas, together with other native species, such as ash ( Fraxinus angustifolia Vahl.) and hawthorn ( Crataegus monogyna Jacq.). We addressed three main objectives: (1) to gain an improved understanding of some specific relationships between environmental parameters and leaf-level physiological factors in these riparian forest species, (2) to compare the leaf-level physiology of these riparian species to each other, and (3) to compare leaf-level responses within native riparian plots to adjacent restoration plots, in order to evaluate the competence of the plants used for the recovery of those degraded areas. We found significant differences in physiological performance between mature and young white poplars in the natural stand and among planted species. The net assimilation and transpiration rates, diameter, and height of white poplar plants were superior to those of ash and hawthorn. Ash and hawthorn showed higher water use efficiency than white poplar. White poplar also showed higher levels of stomatal conductance, behaving as a fast-growing, water-consuming species with a more active gas exchange and ecophysiological competence than the other species used for restoration purposes. In the restoration zones, the planted white poplars had higher rates of net assimilation and water use efficiency than the mature trees in the natural stand. We propose the use of white poplar for the rapid restoration of riparian vegetation in semi-arid Mediterranean environments. Ash and hawthorn can also play a role as accompanying species for the purpose of biodiversity.

  18. Riparian valley oak (Quercus lobata) forest restoration on the middle Sacramento River, California

    Treesearch

    F. Thomas Griggs; Gregory H. Golet

    2002-01-01

    In 1989 The Nature Conservancy initiated a riparian horticultural restoration program on the floodplain of the middle Sacramento River, California. At nearly all restoration sites Valley oak (Quercus lobata Nee) comprised a major component of the planting design. Valley oaks are a keystone tree species of lowland floodplain habitats in California...

  19. Recovery of endemic dragonflies after removal of invasive alien trees.

    PubMed

    Samways, Michael J; Sharratt, Norma J

    2010-02-01

    Because dragonflies are very sensitive to alien trees, we assessed their response to large-scale restoration of riparian corridors. We compared three types of disturbance regime--alien invaded, cleared of alien vegetation, and natural vegetation (control)--and recorded data on 22 environmental variables. The most significant variables in determining dragonfly assemblages were percentage of bank cover and tree canopy cover, which indicates the importance of vegetation architecture for these dragonflies. This finding suggests that it is important to restore appropriate marginal vegetation and sunlight conditions. Recovery of dragonfly assemblages after the clearing of alien trees was substantial. Species richness and abundance at restored sites matched those at control sites. Dragonfly assemblage patterns reflected vegetation succession. Thus, initially eurytopic, widespread species were the main beneficiaries of the removal of alien trees, and stenotopic, endemic species appeared after indigenous vegetation recovered over time. Important indicator species were the two national endemics (Allocnemis leucosticta and Pseudagrion furcigerum), which, along with vegetation type, can be used to monitor return of overall integrity of riparian ecology and to make management decisions. Endemic species as a whole responded positively to restoration, which suggests that indigenous vegetation recovery has major benefits for irreplaceable and widespread generalist species.

  20. Tree production in desert regions using effluent and water harvesting

    Treesearch

    Martin M. Karpiscak; Gerald J. Gottfried

    2000-01-01

    Treated municipal effluent combined with water harvesting can be used for land restoration and enhancing the growth of important riparian tree species. Paired studies in Arizona are assessing the potential of growing trees using mixtures of effluent and potable water. Trees are grown in the field and in containers. Initial results from the field show high survival for...

  1. Vulnerability of riparian ecosystems to elevated CO2 and climate change in arid and semiarid western North America

    USGS Publications Warehouse

    Perry, Laura G.; Andersen, Douglas C.; Reynolds, Lindsay V.; Nelson, S. Mark; Shafroth, Patrick B.

    2012-01-01

    Riparian ecosystems, already greatly altered by water management, land development, and biological invasion, are being further altered by increasing atmospheric CO2 concentrations ([CO2]) and climate change, particularly in arid and semiarid (dryland) regions. In this literature review, we (1) summarize expected changes in [CO2], climate, hydrology, and water management in dryland western North America, (2) consider likely effects of those changes on riparian ecosystems, and (3) identify critical knowledge gaps. Temperatures in the region are rising and droughts are becoming more frequent and intense. Warmer temperatures in turn are altering river hydrology: advancing the timing of spring snow melt floods, altering flood magnitudes, and reducing summer and base flows. Direct effects of increased [CO2] and climate change on riparian ecosystems may be similar to effects in uplands, including increased heat and water stress, altered phenology and species geographic distributions, and disrupted trophic and symbiotic interactions. Indirect effects due to climate-driven changes in streamflow, however, may exacerbate the direct effects of warming and increase the relative importance of moisture and fluvial disturbance as drivers of riparian ecosystem response to global change. Together, climate change and climate-driven changes in streamflow are likely to reduce abundance of dominant, native, early-successional tree species, favor herbaceous species and both drought-tolerant and late-successional woody species (including many introduced species), reduce habitat quality for many riparian animals, and slow litter decomposition and nutrient cycling. Climate-driven changes in human water demand and associated water management may intensify these effects. On some regulated rivers, however, reservoir releases could be managed to protect riparian ecosystem. Immediate research priorities include determining riparian species' environmental requirements and monitoring riparian

  2. DEVELOPMENT OF AN INDEX OF ALIEN SPECIES INVASIVENESS: AN AID TO ASSESSING RIPARIAN VEGETATION CONDITION

    EPA Science Inventory

    Many riparian areas are invaded by alien plant species that negatively affect native species composition, community dynamics and ecosystem properties. We sampled vegetation along reaches of 31 low order streams in eastern Oregon, and characterized species assemblages at patch an...

  3. Tree-growth analyses to estimate tree species' drought tolerance.

    PubMed

    Eilmann, Britta; Rigling, Andreas

    2012-02-01

    Climate change is challenging forestry management and practices. Among other things, tree species with the ability to cope with more extreme climate conditions have to be identified. However, while environmental factors may severely limit tree growth or even cause tree death, assessing a tree species' potential for surviving future aggravated environmental conditions is rather demanding. The aim of this study was to find a tree-ring-based method suitable for identifying very drought-tolerant species, particularly potential substitute species for Scots pine (Pinus sylvestris L.) in Valais. In this inner-Alpine valley, Scots pine used to be the dominating species for dry forests, but today it suffers from high drought-induced mortality. We investigate the growth response of two native tree species, Scots pine and European larch (Larix decidua Mill.), and two non-native species, black pine (Pinus nigra Arnold) and Douglas fir (Pseudotsuga menziesii Mirb. var. menziesii), to drought. This involved analysing how the radial increment of these species responded to increasing water shortage (abandonment of irrigation) and to increasingly frequent drought years. Black pine and Douglas fir are able to cope with drought better than Scots pine and larch, as they show relatively high radial growth even after irrigation has been stopped and a plastic growth response to drought years. European larch does not seem to be able to cope with these dry conditions as it lacks the ability to recover from drought years. The analysis of trees' short-term response to extreme climate events seems to be the most promising and suitable method for detecting how tolerant a tree species is towards drought. However, combining all the methods used in this study provides a complete picture of how water shortage could limit species.

  4. Favorable fragmentation: river reservoirs can impede downstream expansion of riparian weeds.

    PubMed

    Rood, Stewart B; Braatne, Jeffrey H; Goater, Lori A

    2010-09-01

    River valleys represent biologically rich corridors characterized by natural disturbances that create moist and barren sites suitable for colonization by native riparian plants, and also by weeds. Dams and reservoirs interrupt the longitudinal corridors and we hypothesized that this could restrict downstream weed expansion. To consider this "reservoir impediment" hypothesis we assessed the occurrences and abundances of weeds along a 315-km river valley corridor that commenced with an unimpounded reach of the Snake River and extended through Brownlee, Oxbow, and Hells Canyon reservoirs and dams, and downstream along the Snake River. Sampling along 206 belt transects with 3610 quadrats revealed 16 noxious and four invasive weed species. Ten weeds were upland plants, with Canada thistle (Cirsium arvense) restricted to the upstream reaches, where field morning glory (Convolvulus arvensis) was also more common. In contrast, St. John's wort (Hypericum perforatum) was more abundant below the dams, and medusahead wildrye (Taeniatherum caput-medusae) occurred primarily along the reservoirs. All seven riparian species were abundant in the upstream zones but sparse or absent below the dams. This pattern was observed for the facultative riparian species, poison hemlock (Conium maculatum) and perennial pepperweed (Lepidium latifolium), the obligate riparian, yellow nut sedge (Cyperus esculentus), the invasive perennial, reed canary grass (Phalaris arundinacea), and three invasive riparian trees, Russian olive (Elaeagnus angustifolia), false indigo (Amorpha fruticosa), and tamarisk (Tamarix spp.). The hydrophyte purple loosestrife (Lythrum salicaria) was also restricted to the upstream zone. These longitudinal patterns indicate that the reservoirs have impeded the downstream expansion of riparian weeds, and this may especially result from the repetitive draw-down and refilling of Brownlee Reservoir that imposes a lethal combination of drought and flood stress. The dams and

  5. Evaluating Connectivity for two mid-sized mammals Across Riparian Corridors using Wildlife Crossing Monitoring and Species Distribution Modeling

    NASA Astrophysics Data System (ADS)

    Jeong, S.

    2016-12-01

    The movement of wildlife can be constrained by river renovation projects owing to the presence of artificial structures. This study evaluates lateral connectivity, the ability to cross from habitat on one side of the river, through riparian vegetation, embankments, and the river to the other, of two mammal species, the leopard cat (Felis bengalensis euptilura) and water deer (Hydropotes inermis). We used 34 months of monitoring on 250 m stream segments on the Seom river, in South Korea to model the lateral connectivity of the stream between suitable habitats on either side of the steam. Habitat suitability within the landscape was determined using species distribution modelingand was used to determine where we thought the animals would want to pass across the river. We compared the predicted crossing locations to observed crossings.We assessed lateral connectivity suitability with maximum entropy and logistic regression models, and species' presences detected from snow tracking, heat sensor cameras, and scat or other signs, as well as landscape variables. Leopard cats prefer upland forest, while water deer prefer the forest edge and riparian corridor. For both target species, the best riparian habitats were characterized by the presence of vegetation cover on the embankment and by at least one side of an embankment being adjacent to farmland or forest cover. The lateral connectivity for the two target species showed different requirements. Water deer cross through large culverts with an openness ratio of 0.7 or under bridges, whereas leopard cats utilized drainage pipes and culvert boxes with a much smaller openness ratio. Stream reaches located close to a river tributary had the highest connectivity values, and areas modeled as good habitat for both species thatlink watershed and riparian habitats showed high connectivity values. Artifacts such as steep banks, concrete embankments, and adjacent roads were found to degrade the lateral connectivity of wildlife

  6. Exact solutions for species tree inference from discordant gene trees.

    PubMed

    Chang, Wen-Chieh; Górecki, Paweł; Eulenstein, Oliver

    2013-10-01

    Phylogenetic analysis has to overcome the grant challenge of inferring accurate species trees from evolutionary histories of gene families (gene trees) that are discordant with the species tree along whose branches they have evolved. Two well studied approaches to cope with this challenge are to solve either biologically informed gene tree parsimony (GTP) problems under gene duplication, gene loss, and deep coalescence, or the classic RF supertree problem that does not rely on any biological model. Despite the potential of these problems to infer credible species trees, they are NP-hard. Therefore, these problems are addressed by heuristics that typically lack any provable accuracy and precision. We describe fast dynamic programming algorithms that solve the GTP problems and the RF supertree problem exactly, and demonstrate that our algorithms can solve instances with data sets consisting of as many as 22 taxa. Extensions of our algorithms can also report the number of all optimal species trees, as well as the trees themselves. To better asses the quality of the resulting species trees that best fit the given gene trees, we also compute the worst case species trees, their numbers, and optimization score for each of the computational problems. Finally, we demonstrate the performance of our exact algorithms using empirical and simulated data sets, and analyze the quality of heuristic solutions for the studied problems by contrasting them with our exact solutions.

  7. Dissolved organic carbon biodegradability from leaf litter leachates of riparian tropical trees

    NASA Astrophysics Data System (ADS)

    Bastianoni, A.; Montoya, J. V.; Mendez, C.; Paolini, J.

    2012-04-01

    It is generally assumed that leaf litter with varying chemical composition may show different rates of mass loss, dissolved organic carbon (DOC) release, and DOC biodegradability. Leaf litter is composed of different organic compounds, which may differ in their release rates. Some authors consider leaf litter chemical quality (carbon to nitrogen ratio (C:N) and polyphenolics content) as an indicator of leaf litter mass losses and DOC released into stream water through leaching. In this research, we determined if leachate's DOC biodegradability exhibited a positive relationship with leaf litter chemical quality and leaf litter mass loss due to leaching. In order to test these hypotheses, leaf litter from six riparian tree species (Bambusa vulgaris; Castilla elastica; Artocarpus altilis; Cecropia peltata; Hura crepitans and Ficus maxima), present in the lower reaches of a fifth-order stream in northern Venezuela was collected during the dry season of 2010. To evaluate leaf litter mass loss, air-dried leaves were incubated in Milli-Q water at room temperature in the dark. After 1h, 6h, 1d, 2d, 4d, 8d and 15d, microcosms were removed from the assay to determine remaining mass. DOC biodegradability was measured using 24 h leachates that were added into a 1L glass flask containing 250mL of unfiltered stream water, 4g of stream sediment, and nutrient amendments until all incubations had equal initial DOC concentrations. Biodegradability of DOC was measured at 0, 1, 2, 5 and 7 days as the decrease in DOC concentration through time. Chemical characterization of leaf litter involved the determination of total concentrations of C, N, and poliphenolics. Three replicates were used for all analyses. Initial chemical characterization of leaf litter showed that only two species (C. elastica and A. altilis), had similar C:N ratios (~31). The other four species, showed different C and N contents but presented C:N ratios between 21 and 23. Total polyphenolics content varied greatly

  8. Quantifying root-reinforcement of river bank soils by four Australian tree species

    NASA Astrophysics Data System (ADS)

    Docker, B. B.; Hubble, T. C. T.

    2008-08-01

    The increased shear resistance of soil due to root-reinforcement by four common Australian riparian trees, Casuarina glauca, Eucalyptus amplifolia, Eucalyptus elata and Acacia floribunda, was determined in-situ with a field shear-box. Root pull-out strengths and root tensile-strengths were also measured and used to evaluate the utility of the root-reinforcement estimation models that assume simultaneous failure of all roots at the shear plane. Field shear-box results indicate that tree roots fail progressively rather than simultaneously. Shear-strengths calculated for root-reinforced soil assuming simultaneous root failure, yielded values between 50% and 215% higher than directly measured shear-strengths. The magnitude of the overestimate varies among species and probably results from differences in both the geometry of the root-system and tensile strengths of the root material. Soil blocks under A. floribunda which presents many, well-spread, highly-branched fine roots with relatively higher tensile strength, conformed most closely with root model estimates; whereas E. amplifolia, which presents a few, large, unbranched vertical roots, concentrated directly beneath the tree stem and of relatively low tensile strength, deviated furthest from model-estimated shear-strengths. These results suggest that considerable caution be exercised when applying estimates of increased shear-strength due to root-reinforcement in riverbank stability modelling. Nevertheless, increased soil shear strength provided by tree roots can be calculated by knowledge of the Root Area Ratio ( RAR) at the shear plane. At equivalent RAR values, A. floribunda demonstrated the greatest earth reinforcement potential of the four species studied.

  9. Watershed Management For Endangered Aquatic and Riparian Species: Facts and Fallacies

    Treesearch

    D.G. Neary; J.N. Rinne; A.L. Medina; M.B. Baker; J.L. Michael

    2000-01-01

    River basin management is becoming increasingly complex in the United States since watershed managers are required to take into consideration the threatened and endangered (T&E) species that inhabit aquatic and riparian ecosystems. Unfortunately too many fallacies and political agendas have crept into the picture. Suppositions and hypotheses fly everywhere in the...

  10. Changes In Tree Species In Riparian Zones Of Urban Streams May Have Effects On Restoration And Storm Water Control Efforts

    EPA Science Inventory

    A riparian zone is the land and vegetation within and directly adjacent to surface water ecosystems, such as lakes and streams. The vegetation in riparian zones provides ecosystem services (such as reducing flooding and bank erosion and reducing levels of pollutants in streams) ...

  11. Vegetation development following stream/river restoration: more natural fluvial dynamics and morphology, return of aquatic and riparian plant species?

    NASA Astrophysics Data System (ADS)

    Soons, M. B.

    2012-04-01

    After centuries of human interventions in stream/river dynamics and morphology aimed at optimizing landscapes for agricultural and industrial purposes, new insights have inspired water managers to try and combine stream and river ecosystem functions with the conservation of biodiversity. Around the world, aquatic and riparian species have declined strongly due to pollution, destruction and fragmentation of their habitat, so that biodiversity conservation initiatives primarily focus on habitat restoration. In the past decades many stream and river restoration projects have been carried out and often hydrological dynamics and morphology have been restored to a more natural state. However, the successful restoration of aquatic and riparian habitats very often failed to result in restoration of their biodiversity. This lack of success from a biodiversity conservation perspective is usually attributed to 'dispersal limitation', meaning that the habitat may be restored, but species fail to reach the site and re-colonize it. Especially re-colonization by aquatic and riparian plant species is important, as such species function as ecosystem engineers: their presence alters fluvial dynamics and morphology, generates additional habitat heterogeneity and provides habitat and food for animal species. Following minor disturbances, re-colonization is often possible through locally remaining populations, by seeds in the seed bank or by surviving plant fragments. However, following major disturbances, colonization and establishment from other source populations are necessary. This usually occurs through dispersal of seeds (and in more aquatic species also by dispersal of vegetative fragments) into the restored wetland area. As dispersal occurs predominantly over short distances and source populations of aquatic and riparian species may be lacking in the surroundings, dispersal may be a limiting factor in the development of aquatic and riparian vegetation at a restored site. But

  12. Responses of riparian cottonwoods to alluvial water table declines

    USGS Publications Warehouse

    Scott, M.L.; Shafroth, P.B.; Auble, G.T.

    1999-01-01

    Human demands for surface and shallow alluvial groundwater have contributed to the loss, fragmentation, and simplification of riparian ecosystems. Populus species typically dominate riparian ecosystems throughout arid and semiarid regions of North American and efforts to minimize loss of riparian Populus requires an integrated understanding of the role of surface and groundwater dynamics in the establishment of new, and maintenance of existing, stands. In a controlled, whole-stand field experiment, we quantified responses of Populus morphology, growth, and mortality to water stress resulting from sustained water table decline following in-channel sand mining along an ephemeral sandbed stream in eastern Colorado, USA. We measured live crown volume, radial stem growth, annual branch increment, and mortality of 689 live Populus deltoides subsp. monilifera stems over four years in conjunction with localized water table declines. Measurements began one year prior to mining and included trees in both affected and unaffected areas. Populus demonstrated a threshold response to water table declines in medium alluvial sands; sustained declines ???1 m produced leaf desiccation and branch dieback within three weeks and significant declines in live crown volume, stem growth, and 88% mortality over a three-year period. Declines in live Crown volume proved to be a significant leading indicator of mortality in the following year. A logistic regression of tree survival probability against the prior year's live crown volume was significant (-2 log likelihood = 270, ??2 with 1 df = 232, P < 0.0001) and trees with absolute declines in live crown volume of ???30 during one year had survival probabilities <0.5 in the following year. In contrast, more gradual water table declines of ~0.5 m had no measurable effect on mortality, stem growth, or live crown volume and produced significant declines only in annual branch growth increments. Developing quantitative information on the timing and

  13. Associated riparian communities

    Treesearch

    Colin C. Hardy; Robert E. Keane; Michael G. Harrington

    2000-01-01

    Some 100 years of fire exclusion in the Interior Northwest has resulted in riparian areas dominated by dense thickets of shade-tolerant trees. If former, more open conditions could be restored, these habitats could once more support a more diverse bird community. Efforts toward this at two study sites are described.

  14. Indirect effects of biocontrol of an invasive riparian plant (Tamarix) alters habitat and reduces herpetofauna abundance

    USGS Publications Warehouse

    Bateman, H.L.; Merritt, D.M.; Glenn, E.P.; Nagler, P.L.

    2014-01-01

    The biological control agent (tamarisk leaf beetle, Diorhabda spp.) is actively being used to defoliate exotic saltcedar or tamarisk (Tamarix spp.) in riparian ecosystems in western USA. The Virgin River in Arizona and Nevada is a system where tamarisk leaf beetle populations are spreading. Saltcedar biocontrol, like other control methods, has the potential to affect non-target species. Because amphibians and reptiles respond to vegetation changes in habitat and forage in areas where beetles are active, herpetofauna are model taxa to investigate potential impacts of biocontrol defoliation. Our objectives related herpetofauna abundance to vegetation cover and indices (normalized difference vegetation index, NDVI; enhanced vegetation index, EVI) and timing of biocontrol defoliation. We captured herpetofauna and ground-dwelling arthropods in trap arrays and measured vegetation using remotely sensed images and on-the-ground measurements at 16–21 sites 2 years before (2009–2010) and 2 years following (2011–2012) biocontrol defoliation. Following defoliation, riparian stands (including stands mixed with native and exotic trees and stands of monotypic exotic saltcedar) had significantly lower NDVI and EVI values and fewer captures of marked lizards. Total captures of herpetofauna (toads, lizards, and snakes) were related to higher vegetation cover and sites with a lower proportion of saltcedar. Our results suggest that effects of biocontrol defoliation are likely to be site-specific and depend upon the proportion of native riparian trees established prior to biocontrol introduction and defoliation. The mechanisms by which habitat structure, microclimate, and ultimately vertebrate species are affected by exotic plant biocontrol riparian areas should be a focus of natural-resource managers.

  15. Liana competition with tropical trees varies seasonally but not with tree species identity.

    PubMed

    Leonor, Alvarez-Cansino; Schnitzer, Stefan A; Reid, Joseph P; Powers, Jennifer S

    2015-01-01

    Lianas in tropical forests compete intensely with trees for above- and belowground resources and limit tree growth and regeneration. Liana competition with adult canopy trees may be particularly strong, and, if lianas compete more intensely with some tree species than others, they may influence tree species composition. We performed the first systematic, large-scale liana removal experiment to assess the competitive effects of lianas on multiple tropical tree species by measuring sap velocity and growth in a lowland tropical forest in Panama. Tree sap velocity increased 60% soon after liana removal compared to control trees, and tree diameter growth increased 25% after one year. Although tree species varied in their response to lianas, this variation was not significant, suggesting that lianas competed similarly with all tree species examined. The effect of lianas on tree sap velocity was particularly strong during the dry season, when soil moisture was low, suggesting that lianas compete intensely with trees for water. Under the predicted global change scenario of increased temperature and drought intensity, competition from lianas may become more prevalent in seasonal tropical forests, which, according to our data, should have a negative effect on most tropical tree species.

  16. Structural and compositional controls on transpiration in 40- and 450-year-old riparian forests in western Oregon, USA.

    PubMed

    Moore, Georgianne W; Bond, Barbara J; Jones, Julia A; Phillips, Nathan; Meinzer, Federick C

    2004-05-01

    Large areas of forests in the Pacific Northwest are being transformed to younger forests, yet little is known about the impact this may have on hydrological cycles. Previous work suggests that old trees use less water per unit leaf area or sapwood area than young mature trees of the same species in similar environments. Do old forests, therefore, use less water than young mature forests in similar environments, or are there other structural or compositional components in the forests that compensate for tree-level differences? We investigated the impacts of tree age, species composition and sapwood basal area on stand-level transpiration in adjacent watersheds at the H.J. Andrews Forest in the western Cascades of Oregon, one containing a young, mature (about 40 years since disturbance) conifer forest and the other an old growth (about 450 years since disturbance) forest. Sap flow measurements were used to evaluate the degree to which differences in age and species composition affect water use. Stand sapwood basal area was evaluated based on a vegetation survey for species, basal area and sapwood basal area in the riparian area of two watersheds. A simple scaling exercise derived from estimated differences in water use as a result of differences in age, species composition and stand sapwood area was used to estimate transpiration from late June through October within the entire riparian area of these watersheds. Transpiration was higher in the young stand because of greater sap flux density (sap flow per unit sapwood area) by age class and species, and greater total stand sapwood area. During the measurement period, mean daily sap flux density was 2.30 times higher in young compared with old Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) trees. Sap flux density was 1.41 times higher in young red alder (Alnus rubra Bong.) compared with young P. menziesii trees, and was 1.45 times higher in old P. menziesii compared with old western hemlock (Tsuga heterophylla (Raf

  17. Use of standardized visual assessments of riparian and stream condition to manage riparian bird habitat in eastern Oregon.

    PubMed

    Cooke, Hilary A; Zack, Steve

    2009-07-01

    The importance of riparian vegetation to support stream function and provide riparian bird habitat in semiarid landscapes suggests that standardized assessment tools that include vegetation criteria to evaluate stream health could also be used to assess habitat conditions for riparian-dependent birds. We first evaluated the ability of two visual assessments of woody vegetation in the riparian zone (corridor width and height) to describe variation in the obligate riparian bird ensemble along 19 streams in eastern Oregon. Overall species richness and the abundances of three species all correlated significantly with both, but width was more important than height. We then examined the utility of the riparian zone criteria in three standardized and commonly used rapid visual riparian assessment protocols--the USDI BLM Proper Functioning Condition (PFC) assessment, the USDA NRCS Stream Visual Assessment Protocol (SVAP), and the U.S. EPA Habitat Assessment Field Data Sheet (HAFDS)--to assess potential riparian bird habitat. Based on the degree of correlation of bird species richness with assessment ratings, we found that PFC does not assess obligate riparian bird habitat condition, SVAP provides a coarse estimate, and HAFDS provides the best assessment. We recommend quantitative measures of woody vegetation for all assessments and that all protocols incorporate woody vegetation height. Given that rapid assessments may be the only source of information for thousands of kilometers of streams in the western United States, incorporating simple vegetation measurements is a critical step in evaluating the status of riparian bird habitat and provides a tool for tracking changes in vegetation condition resulting from management decisions.

  18. Effects of physical disturbance and granivory on establishment of native and alien riparian trees in Colorado, USA

    USGS Publications Warehouse

    Katz, G.L.; Friedman, J.M.; Beatty, S.W.

    2001-01-01

    In western North America, the alien Elaeagnus angustifolia L. invades riparian habitats usually dominated by pioneer woody species such as Populus deltoides Marshall ssp. monilifera (Aiton) Eckenwalder. We conducted manipulative field experiments to compare the importance of physical disturbance and granivory for seedling establishment of these two species. We planted seeds of both species in disturbed and undisturbed study plots, and used exclosures, seed dish trials and live-trapping to assess the role of granivory. Seedling establishment of both species was increased by physical disturbance and seeds of both species were subject to granivory. However, the relative importance of these two factors differed between species. For P. deltoides, lack of physical disturbance prevented seedling establishment in uncleared subplots, but granivory did not prevent seedling establishment outside of exclosures. For E. angustifolia, granivory prevented seedling establishment outside of exclosures, but lack of physical disturbance did not prevent establishment in uncleared subplots. The lesser dependence on disturbance may enable E. angustifolia to invade areas characterized by low levels of fluvial disturbance, such as floodplains along regulated rivers, where P. deltoides recruitment does not occur. Populations of granivorous rodents may affect the susceptibility of riparian ecosystems to invasion by E. angustifolia.

  19. Irrational exuberance for resolved species trees.

    PubMed

    Hahn, Matthew W; Nakhleh, Luay

    2016-01-01

    Phylogenomics has largely succeeded in its aim of accurately inferring species trees, even when there are high levels of discordance among individual gene trees. These resolved species trees can be used to ask many questions about trait evolution, including the direction of change and number of times traits have evolved. However, the mapping of traits onto trees generally uses only a single representation of the species tree, ignoring variation in the gene trees used to construct it. Recognizing that genes underlie traits, these results imply that many traits follow topologies that are discordant with the species topology. As a consequence, standard methods for character mapping will incorrectly infer the number of times a trait has evolved. This phenomenon, dubbed "hemiplasy," poses many problems in analyses of character evolution. Here we outline these problems, explaining where and when they are likely to occur. We offer several ways in which the possible presence of hemiplasy can be diagnosed, and discuss multiple approaches to dealing with the problems presented by underlying gene tree discordance when carrying out character mapping. Finally, we discuss the implications of hemiplasy for general phylogenetic inference, including the possible drawbacks of the widespread push for "resolved" species trees. © 2015 The Author(s). Evolution © 2015 The Society for the Study of Evolution.

  20. Reconciliation of Gene and Species Trees

    PubMed Central

    Rusin, L. Y.; Lyubetskaya, E. V.; Gorbunov, K. Y.; Lyubetsky, V. A.

    2014-01-01

    The first part of the paper briefly overviews the problem of gene and species trees reconciliation with the focus on defining and algorithmic construction of the evolutionary scenario. Basic ideas are discussed for the aspects of mapping definitions, costs of the mapping and evolutionary scenario, imposing time scales on a scenario, incorporating horizontal gene transfers, binarization and reconciliation of polytomous trees, and construction of species trees and scenarios. The review does not intend to cover the vast diversity of literature published on these subjects. Instead, the authors strived to overview the problem of the evolutionary scenario as a central concept in many areas of evolutionary research. The second part provides detailed mathematical proofs for the solutions of two problems: (i) inferring a gene evolution along a species tree accounting for various types of evolutionary events and (ii) trees reconciliation into a single species tree when only gene duplications and losses are allowed. All proposed algorithms have a cubic time complexity and are mathematically proved to find exact solutions. Solving algorithms for problem (ii) can be naturally extended to incorporate horizontal transfers, other evolutionary events, and time scales on the species tree. PMID:24800245

  1. Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent.

    PubMed

    Allman, Elizabeth S; Degnan, James H; Rhodes, John A

    2011-06-01

    Gene trees are evolutionary trees representing the ancestry of genes sampled from multiple populations. Species trees represent populations of individuals-each with many genes-splitting into new populations or species. The coalescent process, which models ancestry of gene copies within populations, is often used to model the probability distribution of gene trees given a fixed species tree. This multispecies coalescent model provides a framework for phylogeneticists to infer species trees from gene trees using maximum likelihood or Bayesian approaches. Because the coalescent models a branching process over time, all trees are typically assumed to be rooted in this setting. Often, however, gene trees inferred by traditional phylogenetic methods are unrooted. We investigate probabilities of unrooted gene trees under the multispecies coalescent model. We show that when there are four species with one gene sampled per species, the distribution of unrooted gene tree topologies identifies the unrooted species tree topology and some, but not all, information in the species tree edges (branch lengths). The location of the root on the species tree is not identifiable in this situation. However, for 5 or more species with one gene sampled per species, we show that the distribution of unrooted gene tree topologies identifies the rooted species tree topology and all its internal branch lengths. The length of any pendant branch leading to a leaf of the species tree is also identifiable for any species from which more than one gene is sampled.

  2. Species abundances, guild dominance patterns, and community structure of breeding riparian birds

    Treesearch

    Deborah M. Finch

    1989-01-01

    I investigated trends in bird species populations, guild structure, and bird communities along a riparian altitudinal cline in the Medicine Bow National Forest of southeastern Wyoming. Streamside habitats were divided into three elevational zones: low-elevation (2050 to 2260 m) cottonwood zone, mid-elevation (2290 to 2530 m) mixed shrub willow zone, and high elevation...

  3. Rapid Simultaneous Assessment of Riparian Shade and Buffer Width Using LiDAR Data

    NASA Astrophysics Data System (ADS)

    Seixas, G.; Beechie, T. J.; Kiffney, P.

    2016-12-01

    Riparian buffers perform a number of functions including provision of shade and wood recruitment to forested streams. Shade is a primary control on stream water temperature and recruitment of large wood is essential for the maintenance of key biological functions such as salmon and invertebrate habitat. Because temperature is a limiting factor for riverine primary production, many aquatic invertebrates, and endangered salmonid species, and because riparian forest structure has been modified by management practices for decades in many of the world's watersheds, rapid assessment of riparian shade and wood recruitment potential is critical for restoration decision-making. We introduce a new automated LiDAR-based method that simultaneously measures two key metrics of riparian vegetation condition—`view-to-sky' openness of the canopy and buffer width. If the height of historical mature trees in the area of interest is known or can be assumed, a change in view-to-sky angle due to land uses may be calculated. We apply the method to portions of the Chehalis River basin in southwestern Washington State, USA, an area of extensive logging and agriculture. We find a high level of modification to view-to-sky angle has occurred in urban and agricultural areas of the basin, whereas riparian shade is maintained by buffers in some regions of active logging. Buffers composed of trees large enough for wood recruitment have all but been eradicated from the basin. Due to the method's simplicity, ease of application and focus on deviation from natural conditions, it has the potential to be used effectively for river restoration planning at the watershed scale.

  4. Early Response of Soil Properties and Function to Riparian Rainforest Restoration

    PubMed Central

    Gageler, Rose; Bonner, Mark; Kirchhof, Gunnar; Amos, Mark; Robinson, Nicole; Schmidt, Susanne; Shoo, Luke P.

    2014-01-01

    Reforestation of riparian zones is increasingly practiced in many regions for purposes of biodiversity conservation, bank stabilisation, and improvement in water quality. This is in spite of the actual benefits of reforestation for recovering underlying soil properties and function remaining poorly understood. Here we compare remnant riparian rainforest, pasture and reforestation plantings aged 2–20 years in an Australian subtropical catchment on ferrosols to determine the extent to which reforestation restores key soil properties. Of the nine soil attributes measured (total nitrogen, nitrate and ammonium concentrations, net nitrification and ammonification rates, organic carbon, bulk density, fine root biomass and water infiltration rates), only infiltration rates were significantly lower in pasture than remnant riparian rainforest. Within reforestation plantings, bulk density decreased up to 1.4-fold and infiltration rates increased up to 60-fold with time post-reforestation. Our results suggest that the main outcome of belowground processes of early reforestation is the recovery of the soils' physical structure, with potential beneficial ecosystem services including reduced runoff, erosion and associated sediment and nutrient loads in waterways. We also demonstrate differential impacts of two commonly planted tree species on a subset of soil properties suggesting that preferential planting of select species could accelerate progress on specific restoration objectives. PMID:25117589

  5. Early response of soil properties and function to riparian rainforest restoration.

    PubMed

    Gageler, Rose; Bonner, Mark; Kirchhof, Gunnar; Amos, Mark; Robinson, Nicole; Schmidt, Susanne; Shoo, Luke P

    2014-01-01

    Reforestation of riparian zones is increasingly practiced in many regions for purposes of biodiversity conservation, bank stabilisation, and improvement in water quality. This is in spite of the actual benefits of reforestation for recovering underlying soil properties and function remaining poorly understood. Here we compare remnant riparian rainforest, pasture and reforestation plantings aged 2-20 years in an Australian subtropical catchment on ferrosols to determine the extent to which reforestation restores key soil properties. Of the nine soil attributes measured (total nitrogen, nitrate and ammonium concentrations, net nitrification and ammonification rates, organic carbon, bulk density, fine root biomass and water infiltration rates), only infiltration rates were significantly lower in pasture than remnant riparian rainforest. Within reforestation plantings, bulk density decreased up to 1.4-fold and infiltration rates increased up to 60-fold with time post-reforestation. Our results suggest that the main outcome of belowground processes of early reforestation is the recovery of the soils' physical structure, with potential beneficial ecosystem services including reduced runoff, erosion and associated sediment and nutrient loads in waterways. We also demonstrate differential impacts of two commonly planted tree species on a subset of soil properties suggesting that preferential planting of select species could accelerate progress on specific restoration objectives.

  6. Restoration ecology and invasive riparian plants: An introduction to the special section on Tamarix spp. in western North America

    USGS Publications Warehouse

    Shafroth, Patrick B.; Briggs, Mark K.

    2008-01-01

    River systems around the world are subject to various perturbations, including the colonization and spread of non-native species in riparian zones. Riparian resource managers are commonly engaged in efforts to control problematic non-native species and restore native habitats. In western North America, small Eurasian trees or shrubs in the genus Tamarixoccupy hundreds of thousands of hectares of riparian lands, and are the targets of substantial and costly control efforts and associated restoration activities. Still, significant information gaps exist regarding approaches used in control and restoration efforts and their effects on riparian ecosystems. In this special section of papers, eight articles address various aspects of control and restoration associated with Tamarix spp. These include articles focused on planning restoration and revegetation; a synthetic analysis of past restoration efforts; and several specific research endeavors examining plant responses, water use, and various wildlife responses (including birds, butterflies, and lizards). These articles represent important additions to the Tamarix spp. literature and contain many lessons and insights that should be transferable to other analogous situations in river systems globally.

  7. Are temperate canopy spiders tree-species specific?

    PubMed

    Mupepele, Anne-Christine; Müller, Tobias; Dittrich, Marcus; Floren, Andreas

    2014-01-01

    Arboreal spiders in deciduous and coniferous trees were investigated on their distribution and diversity. Insecticidal knock-down was used to comprehensively sample spiders from 175 trees from 2001 to 2003 in the Białowieża forest and three remote forests in Poland. We identified 140 species from 9273 adult spiders. Spider communities were distinguished between deciduous and coniferous trees. The richest fauna was collected from Quercus where beta diversity was also highest. A tree-species-specific pattern was clearly observed for Alnus, Carpinus, Picea and Pinus trees and also for those tree species that were fogged in only four or three replicates, namely Betula and Populus. This hitherto unrecognised association was mainly due to the community composition of common species identified in a Dufrene-Legendre indicator species analysis. It was not caused by spatial or temporal autocorrelation. Explaining tree-species specificity for generalist predators like spiders is difficult and has to involve physical and ecological tree parameters like linkage with the abundance of prey species. However, neither did we find a consistent correlation of prey group abundances with spiders nor could differences in spider guild composition explain the observed pattern. Our results hint towards the importance of deterministic mechanisms structuring communities of generalist canopy spiders although the casual relationship is not yet understood.

  8. The riparian species recovery plan: A status report

    Treesearch

    Steven M. Chambers

    1996-01-01

    Several Federal and State agencies in Arizona and New Mexico are collaborating on the development of a strategy for the restoration of riparian systems. The strategy that is taking shape is the development of a package of formats, methods and information that can guide local groups in developing and implementing local riparian restoration plans. The major elements of...

  9. Potential adoption of agroforestry riparian buffers based on landowner and streamside characteristics

    Treesearch

    K.E. Trozzo; J.F. Munsell; J.L. Chamberlain; W.M. Aust

    2014-01-01

    Riparian forest buffers provide numerous environmental benefits, yet obstacles to landowner adoption are many. One barrier is the perception that riparian forest buffers are used for conservation at the expense of production. We present a study that focused on why landowners are more or less inclined to adopt native fruit and nut tree agroforestry riparian buffers that...

  10. Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance

    PubMed Central

    2013-01-01

    Background Constructing species trees from multi-copy gene trees remains a challenging problem in phylogenetics. One difficulty is that the underlying genes can be incongruent due to evolutionary processes such as gene duplication and loss, deep coalescence, or lateral gene transfer. Gene tree estimation errors may further exacerbate the difficulties of species tree estimation. Results We present a new approach for inferring species trees from incongruent multi-copy gene trees that is based on a generalization of the Robinson-Foulds (RF) distance measure to multi-labeled trees (mul-trees). We prove that it is NP-hard to compute the RF distance between two mul-trees; however, it is easy to calculate this distance between a mul-tree and a singly-labeled species tree. Motivated by this, we formulate the RF problem for mul-trees (MulRF) as follows: Given a collection of multi-copy gene trees, find a singly-labeled species tree that minimizes the total RF distance from the input mul-trees. We develop and implement a fast SPR-based heuristic algorithm for the NP-hard MulRF problem. We compare the performance of the MulRF method (available at http://genome.cs.iastate.edu/CBL/MulRF/) with several gene tree parsimony approaches using gene tree simulations that incorporate gene tree error, gene duplications and losses, and/or lateral transfer. The MulRF method produces more accurate species trees than gene tree parsimony approaches. We also demonstrate that the MulRF method infers in minutes a credible plant species tree from a collection of nearly 2,000 gene trees. Conclusions Our new phylogenetic inference method, based on a generalized RF distance, makes it possible to quickly estimate species trees from large genomic data sets. Since the MulRF method, unlike gene tree parsimony, is based on a generic tree distance measure, it is appealing for analyses of genomic data sets, in which many processes such as deep coalescence, recombination, gene duplication and losses as

  11. Eighteen microsatellite loci in Salix arbutifolia (Salicaceae) and cross-species amplification in Salix and Populus species.

    PubMed

    Hoshikawa, Takeshi; Kikuchi, Satoshi; Nagamitsu, Teruyoshi; Tomaru, Nobuhiro

    2009-07-01

    Salix arbutifolia is a riparian dioecious tree species that is of conservation concern in Japan because of its highly restricted distribution. Eighteen polymorphic loci of dinucleotide microsatellites were isolated and characterized. Among these, estimates of the expected heterozygosity ranged from 0.350 to 0.879. Cross-species amplification was successful at 9-13 loci among six Salix species and at three loci in one Populus species. © 2009 Blackwell Publishing Ltd.

  12. Riparian corridors enhance movement of a forest specialist bird in fragmented tropical forest.

    PubMed

    Gillies, Cameron S; St Clair, Colleen Cassady

    2008-12-16

    Riparian corridors and fencerows are hypothesized to increase the persistence of forest animals in fragmented landscapes by facilitating movement among suitable habitat patches. This function may be critically important for forest birds, which have declined dramatically in fragmented habitats. Unfortunately, direct evidence of corridor use has been difficult to collect at landscape scales and this limits support for corridors in conservation planning. Using telemetry and handheld GPS units, we examined the movement of forest birds by translocating territorial individuals of barred antshrikes (Thamnophilus doliatus; a forest specialist) and rufous-naped wrens (Campylorhynchus rufinucha; a forest generalist) 0.7-1.9 km from their territories in the highly fragmented tropical dry forest of Costa Rica. In each translocation, the directly intervening habitat comprised 1 of 3 treatments: forested riparian corridor, linear living fencerow, or open pasture. Antshrikes returned faster and with greater success in riparian corridors relative to pasture treatments. This species also traveled more directly in riparian corridor treatments, detoured to use forested routes in the other 2 treatments, and did not use fencerows even when they led directly to their home territories. By contrast, wrens were more likely to use fencerows when returning, and return time and success were equivalent among the 3 treatments. Both species crossed fewer gaps in tree cover during riparian corridor treatments than in fencerow or pasture treatments. We conclude that antshrikes, which may be representative of other forest specialists, use forested corridors for movement in this landscape and that fencerows are avoided as movement conduits.

  13. From leaf to basin: evaluating the impacts of introduced plant species on evapotranspiration fluxes from riparian ecosystems in the southwestern U.S

    NASA Astrophysics Data System (ADS)

    Hultine, K. R.; Bush, S.; Nagler, P. L.; Morino, K.; Burtch, K.; Dennison, P. E.; Glenn, E. P.; Ehleringer, J.

    2010-12-01

    Global change processes such as climate change and intensive land use pose significant threats to water resources, particularly in arid regions where potential evapotranspiration far exceeds annual rainfall. Potentially compounding these shortages is the progressive expansion of introduced plant species in riparian areas along streams, canals and rivers in geographically arid regions. The question of whether these invasive species have had or will have impacts on water resources is currently under intense debate. We identify a framework for assessing when and where introduced riparian plant species are likely to have the highest potential impact on hydrologic fluxes of arid and semi-arid river systems. We focus on three introduced plant systems that currently dominate southwestern U.S. riparian forests: tamarisk (Tamarix spp.), Russian olive (Eleagnus angustifolia), and Russian knapweed (Acroptilon repens). Our framework focuses on two main criteria: 1) the ecophysiological traits that promote establishment of invasive species across environmental gradients, and 2) an assessment of how hydrologic fluxes are altered by the establishment of introduced species at varying scales. The framework identifies when and where introduced species should have the highest potential impact on the water cycle. This framework will assist land managers and policy makers with restoration and conservation priorities to preserve water resources and valued riparian habitat given limited economic resources.

  14. Diversity of Riparian Plants among and within Species Shapes River Communities

    PubMed Central

    Jackrel, Sara L.; Wootton, J. Timothy

    2015-01-01

    Organismal diversity among and within species may affect ecosystem function with effects transmitting across ecosystem boundaries. Whether recipient communities adjust their composition, in turn, to maximize their function in response to changes in donor composition at these two scales of diversity is unknown. We use small stream communities that rely on riparian subsidies as a model system. We used leaf pack experiments to ask how variation in plants growing beside streams in the Olympic Peninsula of Washington State, USA affects stream communities via leaf subsidies. Leaves from red alder (Alnus rubra), vine maple (Acer cinereus), bigleaf maple (Acer macrophyllum) and western hemlock (Tsuga heterophylla) were assembled in leaf packs to contrast low versus high diversity, and deployed in streams to compare local versus non-local leaf sources at the among and within species scales. Leaves from individuals within species decomposed at varying rates; most notably thin leaves decomposed rapidly. Among deciduous species, vine maple decomposed most rapidly, harbored the least algal abundance, and supported the greatest diversity of aquatic invertebrates, while bigleaf maple was at the opposite extreme for these three metrics. Recipient communities decomposed leaves from local species rapidly: leaves from early successional plants decomposed rapidly in stream reaches surrounded by early successional forest and leaves from later successional plants decomposed rapidly adjacent to later successional forest. The species diversity of leaves inconsistently affected decomposition, algal abundance and invertebrate metrics. Intraspecific diversity of leaf packs also did not affect decomposition or invertebrate diversity. However, locally sourced alder leaves decomposed more rapidly and harbored greater levels of algae than leaves sourced from conspecifics growing in other areas on the Olympic Peninsula, but did not harbor greater aquatic invertebrate diversity. In contrast to

  15. Diversity of Riparian Plants among and within Species Shapes River Communities.

    PubMed

    Jackrel, Sara L; Wootton, J Timothy

    2015-01-01

    Organismal diversity among and within species may affect ecosystem function with effects transmitting across ecosystem boundaries. Whether recipient communities adjust their composition, in turn, to maximize their function in response to changes in donor composition at these two scales of diversity is unknown. We use small stream communities that rely on riparian subsidies as a model system. We used leaf pack experiments to ask how variation in plants growing beside streams in the Olympic Peninsula of Washington State, USA affects stream communities via leaf subsidies. Leaves from red alder (Alnus rubra), vine maple (Acer cinereus), bigleaf maple (Acer macrophyllum) and western hemlock (Tsuga heterophylla) were assembled in leaf packs to contrast low versus high diversity, and deployed in streams to compare local versus non-local leaf sources at the among and within species scales. Leaves from individuals within species decomposed at varying rates; most notably thin leaves decomposed rapidly. Among deciduous species, vine maple decomposed most rapidly, harbored the least algal abundance, and supported the greatest diversity of aquatic invertebrates, while bigleaf maple was at the opposite extreme for these three metrics. Recipient communities decomposed leaves from local species rapidly: leaves from early successional plants decomposed rapidly in stream reaches surrounded by early successional forest and leaves from later successional plants decomposed rapidly adjacent to later successional forest. The species diversity of leaves inconsistently affected decomposition, algal abundance and invertebrate metrics. Intraspecific diversity of leaf packs also did not affect decomposition or invertebrate diversity. However, locally sourced alder leaves decomposed more rapidly and harbored greater levels of algae than leaves sourced from conspecifics growing in other areas on the Olympic Peninsula, but did not harbor greater aquatic invertebrate diversity. In contrast to

  16. Multiscale remote sensing analysis to monitor riparian and upland semiarid vegetation

    NASA Astrophysics Data System (ADS)

    Nguyen, Uyen

    Index (NDVI) average values in the adjacent uplands also decreased over thirty years and were correlated with the previous year's annual precipitation. Hence an increase in ET in the uplands did not appear to be responsible for the decrease in river flows in this study, leaving increased regional groundwater pumping as a feasible alternative explanation for decreased flows and deterioration of the riparian forest. The second research objective was to develop a new method of classification using very high-resolution aerial photo to map riparian vegetation at the species level in the Colorado River Ecosystem, Grand Canyon area, Arizona. Ground surveys have showed an obvious trend in which non-native saltcedar (Tamarix spp.) has replaced native vegetation over time. Our goal was to develop a quantitative mapping procedure to detect changes in vegetation as the ecosystem continues to respond to hydrological and climate changes. Vegetation mapping for the Colorado River Ecosystem needed an updated database map of the area covered by riparian vegetation and an indicator of species composition in the river corridor. The objective of this research was to generate a new riparian vegetation map at species level using a supervised image classification technique for the purpose of patch and landscape change detection. A new classification approach using multispectral images allowed us to successfully identify and map riparian species coverage the over whole Colorado River Ecosystem, Grand Canyon area. The new map was an improvement over the initial 2002 map since it reduced fragmentation from mixed riparian vegetation areas. The most dominant tree species in the study areas is saltcedar (Tamarix spp.). The overall accuracy is 93.48% and the kappa coefficient is 0.88. The reference initial inventory map was created using 2002 images to compare and detect changes through 2009. The third objective of my research focused on using multiplatform of remote sensing and ground calibration

  17. Indicators: Lakeshore Habitat/Riparian Vegetative Cover

    EPA Pesticide Factsheets

    Riparian and lakeshore vegetative cover consist of the vegetation corridor alongside streams, rivers, and lakes. Vegetative cover refers to overhanging or submerged tree limbs, shrubs, and other plants growing along the shore of the waterbody.

  18. Are Temperate Canopy Spiders Tree-Species Specific?

    PubMed Central

    Mupepele, Anne-Christine; Müller, Tobias; Dittrich, Marcus; Floren, Andreas

    2014-01-01

    Arboreal spiders in deciduous and coniferous trees were investigated on their distribution and diversity. Insecticidal knock-down was used to comprehensively sample spiders from 175 trees from 2001 to 2003 in the Białowieża forest and three remote forests in Poland. We identified 140 species from 9273 adult spiders. Spider communities were distinguished between deciduous and coniferous trees. The richest fauna was collected from Quercus where beta diversity was also highest. A tree-species-specific pattern was clearly observed for Alnus, Carpinus, Picea and Pinus trees and also for those tree species that were fogged in only four or three replicates, namely Betula and Populus. This hitherto unrecognised association was mainly due to the community composition of common species identified in a Dufrene-Legendre indicator species analysis. It was not caused by spatial or temporal autocorrelation. Explaining tree-species specificity for generalist predators like spiders is difficult and has to involve physical and ecological tree parameters like linkage with the abundance of prey species. However, neither did we find a consistent correlation of prey group abundances with spiders nor could differences in spider guild composition explain the observed pattern. Our results hint towards the importance of deterministic mechanisms structuring communities of generalist canopy spiders although the casual relationship is not yet understood. PMID:24586251

  19. Classification of riparian forest species and health condition using multi-temporal and hyperspatial imagery from unmanned aerial system.

    PubMed

    Michez, Adrien; Piégay, Hervé; Lisein, Jonathan; Claessens, Hugues; Lejeune, Philippe

    2016-03-01

    Riparian forests are critically endangered many anthropogenic pressures and natural hazards. The importance of riparian zones has been acknowledged by European Directives, involving multi-scale monitoring. The use of this very-high-resolution and hyperspatial imagery in a multi-temporal approach is an emerging topic. The trend is reinforced by the recent and rapid growth of the use of the unmanned aerial system (UAS), which has prompted the development of innovative methodology. Our study proposes a methodological framework to explore how a set of multi-temporal images acquired during a vegetative period can differentiate some of the deciduous riparian forest species and their health conditions. More specifically, the developed approach intends to identify, through a process of variable selection, which variables derived from UAS imagery and which scale of image analysis are the most relevant to our objectives.The methodological framework is applied to two study sites to describe the riparian forest through two fundamental characteristics: the species composition and the health condition. These characteristics were selected not only because of their use as proxies for the riparian zone ecological integrity but also because of their use for river management.The comparison of various scales of image analysis identified the smallest object-based image analysis (OBIA) objects (ca. 1 m(2)) as the most relevant scale. Variables derived from spectral information (bands ratios) were identified as the most appropriate, followed by variables related to the vertical structure of the forest. Classification results show good overall accuracies for the species composition of the riparian forest (five classes, 79.5 and 84.1% for site 1 and site 2). The classification scenario regarding the health condition of the black alders of the site 1 performed the best (90.6%).The quality of the classification models developed with a UAS-based, cost-effective, and semi-automatic approach

  20. Tamarisk biocontrol using tamarisk beetles: Potential consequences for riparian birds in the southwestern United States

    USGS Publications Warehouse

    Paxton, Eben H.; Theimer, Tad C.; Sogge, Mark K.

    2011-01-01

    The tamarisk beetle (Diorhabda spp.), a non-native biocontrol agent, has been introduced to eradicate tamarisk (Tamarix spp.), a genus of non-native tree that has become a dominant component of riparian woodlands in the southwestern United States. Tamarisk beetles have the potential to spread widely and defoliate large expanses of tamarisk habitat, but the effects of such a widespread loss of riparian vegetation on birds remains unknown. We reviewed literature on the effects of other defoliating insects on birds to investigate the potential for tamarisk beetles to affect birds positively or negatively by changing food abundance and vegetation structure. We then combined data on the temporal patterns of tamarisk defoliation by beetles with nest productivity of a well-studied riparian obligate, the Southwestern Willow Flycatcher (Empidonax traillii extimus), to simulate the potential demographic consequences of beetle defoliation on breeding riparian birds in both the short and long term. Our results highlight that the effects of tamarisk biocontrol on birds will likely vary by species and population, depending upon its sensitivity to seasonal defoliation by beetles and net loss of riparian habitat due to tamarisk mortality. Species with restricted distributions that include areas dominated by tamarisk may be negatively affected both in the short and long term. The rate of regeneration and/or restoration of native cottonwoods (Populus spp.) and willows (Salix spp.) relative to the rate of tamarisk loss will be critical in determining the long-term effect of this large-scale ecological experiment.

  1. SPECIES INTERACTIONS BETWEEN ESTUARINE DETRITIVORES: INHIBITION OR FACILITATION?

    EPA Science Inventory

    Native Hawaiian estuarine detritivores; the prawn Macrobrachium grandimanus, and the neritid gastropod Neritina vespertina, were maintained in flow-through microcosms with conditioned leaves from two riparian tree species, Hau (Hibiscus tiliaceus) and guava (Psidium guajava). Th...

  2. Comparison of bird community indices for riparian restoration planning and monitoring

    USGS Publications Warehouse

    Young, Jock S.; Ammon, Elisabeth M.; Weisburg, Peter J.; Dilts, Thomas E.; Newton, Wesley E.; Wong-Kone, Diane C.; Heki, Lisa G.

    2013-01-01

    The use of a bird community index that characterizes ecosystem integrity is very attractive to conservation planners and habitat managers, particularly in the absence of any single focal species. In riparian areas of the western USA, several attempts at arriving at a community index signifying a functioning riparian bird community have been made previously, mostly resorting to expert opinions or national conservation rankings for species weights. Because extensive local and regional bird monitoring data were available for Nevada, we were able to develop three different indices that were derived empirically, rather than from expert opinion. We formally examined the use of three species weighting schemes in comparison with simple species richness, using different definitions of riparian species assemblage size, for the purpose of predicting community response to changes in vegetation structure from riparian restoration. For the three indices, species were weighted according to the following criteria: (1) the degree of riparian habitat specialization based on regional data, (2) the relative conservation ranking of landbird species, and (3) the degree to which a species is under-represented compared to the regional species pool for riparian areas. To evaluate the usefulness of these indices for habitat restoration planning and monitoring, we modeled them using habitat variables that are expected to respond to riparian restoration efforts, using data from 64 sampling sites in the Walker River Basin in Nevada and California. We found that none of the species-weighting schemes performed any better as an index for evaluating overall habitat condition than using species richness alone as a community index. Based on our findings, the use of a fairly complete list of 30–35 riparian specialists appears to be the best indicator group for predicting the response of bird communities to the restoration of riparian vegetation.

  3. Water-use dynamics of an alien-invaded riparian forest within the Mediterranean climate zone of the Western Cape, South Africa

    NASA Astrophysics Data System (ADS)

    Scott-Shaw, Bruce C.; Everson, Colin S.; Clulow, Alistair D.

    2017-09-01

    In South Africa, the invasion of riparian forests by alien trees has the potential to affect the country's limited water resources. Tree water-use measurements have therefore become an important component of recent hydrological studies. It is difficult for South African government initiatives, such as the Working for Water (WfW) alien clearing program, to justify alien tree removal and implement rehabilitation unless hydrological benefits are known. Consequently, water use within a riparian forest along the Buffeljags River in the Western Cape of South Africa was monitored over a 3-year period. The site consisted of an indigenous stand of Western Cape afrotemperate forest adjacent to a large stand of introduced Acacia mearnsii. The heat ratio method of the heat pulse velocity sap flow technique was used to measure the sap flow of a selection of indigenous species in the indigenous stand, a selection of A. mearnsii trees in the alien stand and two clusters of indigenous species within the alien stand. The indigenous trees in the alien stand at Buffeljags River showed significant intraspecific differences in the daily sap flow rates varying from 15 to 32 L day-1 in summer (sap flow being directly proportional to tree size). In winter (June), this was reduced to only 7 L day-1 when limited energy was available to drive the transpiration process. The water use in the A. mearnsii trees showed peaks in transpiration during the months of March 2012, September 2012 and February 2013. These periods had high average temperatures, rainfall and high daily vapor pressure deficits (VPDs - average of 1.26 kPa). The average daily sap flow ranged from 25 to 35 L in summer and approximately 10 L in the winter. The combined accumulated daily sap flow per year for the three Vepris lanceolata and three A. mearnsii trees was 5700 and 9200 L, respectively, clearly demonstrating the higher water use of the introduced Acacia trees during the winter months. After spatially upscaling the

  4. Incipient radiation within the dominant Hawaiian tree Metrosideros polymorpha

    PubMed Central

    Stacy, E A; Johansen, J B; Sakishima, T; Price, D K; Pillon, Y

    2014-01-01

    Although trees comprise a primary component of terrestrial species richness, the drivers and temporal scale of divergence in trees remain poorly understood. We examined the landscape-dominant tree, Metrosideros polymorpha, for variation at nine microsatellite loci across 23 populations on young Hawai'i Island, sampling each of the island's five varieties throughout its full geographic range. For four varieties, principal coordinate analysis revealed strong clustering of populations by variety across the 10 430 km2 island, indicating partitioning of the species into multiple evolutionarily significant units. The single island-endemic form, riparian var. newellii, showed especially strong differentiation from other varieties despite occurring in sympatry with other varieties and likely evolved from a bog form on the oldest volcano, Kohala, within the past 500 000 years. Along with comparable riparian forms on other Pacific Islands, var. newellii appears to represent parallel incipient ecological speciation within Metrosideros. Greater genetic distance among the more common varieties on the oldest volcano and an inverse relationship between allelic diversity and substrate age appear consistent with colonization of Hawai'i Island by older, partially diverged varieties followed by increased hybridization among varieties on younger volcanoes. This study demonstrates that broad population-level sampling is required to uncover patterns of diversification within a ubiquitous and long-lived tree species. Hawaiian Metrosideros appears to be a case of incipient radiation in trees and thus should be useful for studies of divergence and the evolution of reproductive isolating barriers at the early stages of speciation. PMID:24824285

  5. Riparian vegetation structure under desertification scenarios

    NASA Astrophysics Data System (ADS)

    Rosário Fernandes, M.; Segurado, Pedro; Jauch, Eduardo; Ferreira, M. Teresa

    2015-04-01

    Riparian areas are responsible for many ecological and ecosystems services, including the filtering function, that are considered crucial to the preservation of water quality and social benefits. The main goal of this study is to quantify and understand the riparian variability under desertification scenario(s) and identify the optimal riparian indicators for water scarcity and droughts (WS&D), henceforth improving river basin management. This study was performed in the Iberian Tâmega basin, using riparian woody patches, mapped by visual interpretation on Google Earth imagery, along 130 Sampling Units of 250 m long river stretches. Eight riparian structural indicators, related with lateral dimension, weighted area and shape complexity of riparian patches were calculated using Patch Analyst extension for ArcGis 10. A set of 29 hydrological, climatic, and hydrogeomorphological variables were computed, by a water modelling system (MOHID), using monthly meteorological data between 2008 and 2014. Land-use classes were also calculated, in a 250m-buffer surrounding each sampling unit, using a classification based system on Corine Land Cover. Boosted Regression Trees identified Mean-width (MW) as the optimal riparian indicator for water scarcity and drought, followed by the Weighted Class Area (WCA) (classification accuracy =0.79 and 0.69 respectively). Average Flow and Strahler number were consistently selected, by all boosted models, as the most important explanatory variables. However, a combined effect of hidrogeomorphology and land-use can explain the high variability found in the riparian width mainly in Tâmega tributaries. Riparian patches are larger towards Tâmega river mouth although with lower shape complexity, probably related with more continuous and almost monospecific stands. Climatic, hydrological and land use scenarios, singly and combined, were used to quantify the riparian variability responding to these changes, and to assess the loss of riparian

  6. Gender specific patterns of carbon uptake and water use in a dominant riparian tree species exposed to a warming climate.

    PubMed

    Hultine, Kevin R; Burtch, Kelley G; Ehleringer, James R

    2013-11-01

    Air temperatures in the arid western United States are predicted to increase over the next century. These increases will likely impact the distribution of plant species, particularly dioecious species that show a spatial segregation of the sexes across broad resource gradients. On the basis of spatial segregation patterns, we hypothesized that temperature increases will have a greater negative impact on female plants compared with co-occurring male plants of dioecious species. This hypothesis was tested by examining the whole-plant carbon and water relations of 10-year-old female (n = 18) and male (n = 13) Acer negundo Sarg. trees grown in a common garden in Salt Lake City, UT. The trees were established from cuttings collected where the growing season temperature averaged about 6.5 °C cooler than at the common garden. During May and June, stem sap flux (Js ) was similar between genders, but averaged 25% higher in males during the warmer months of July and August. Daytime canopy stomatal conductance (gs ) per unit leaf area was 12% higher in females in May : June, but was 11% higher in males in July : August. We combined measurements of sap flux-scaled transpiration with measurements of tree allometry and δ(13) C of leaf soluble sugars to estimate whole-tree carbon assimilation (Atree ) and water use efficiency (WUE) (Atree  : Etree ). Atree was similar between genders until late August when Atree was 32% higher in male trees. Atree  : Etree was on average 7% higher in females than in males during the growing season. Patterns of Js , gs , Atree and Atree  : Etree in the present study were in contrast to those previously reported for A. negundo genders under native growing season temperatures. Results suggest that the spatial segregation of the sexes could shift under global warming such that female plants lose their dominance in high-resource habitats, and males increase their dominance in relatively lower-resource habitats. © 2013 John Wiley

  7. Management of riparian buffers: upslope thinning with downslope impacts

    Treesearch

    Kenneth J. Ruzicka; Klaus J. Puettmann; Deanna H. Olson

    2014-01-01

    We examined the potential of using upslope density management to influence growth and drought tolerance of trees in untreated downslope riparian forests. Increment cores from Douglas-fir trees in three mature stands in western Oregon, USA, were collected and measured. Trees responded to an apparent edge effect up to 15 m downslope of thinned areas but not downslope of...

  8. Species Tree Inference Using a Mixture Model.

    PubMed

    Ullah, Ikram; Parviainen, Pekka; Lagergren, Jens

    2015-09-01

    Species tree reconstruction has been a subject of substantial research due to its central role across biology and medicine. A species tree is often reconstructed using a set of gene trees or by directly using sequence data. In either of these cases, one of the main confounding phenomena is the discordance between a species tree and a gene tree due to evolutionary events such as duplications and losses. Probabilistic methods can resolve the discordance by coestimating gene trees and the species tree but this approach poses a scalability problem for larger data sets. We present MixTreEM-DLRS: A two-phase approach for reconstructing a species tree in the presence of gene duplications and losses. In the first phase, MixTreEM, a novel structural expectation maximization algorithm based on a mixture model is used to reconstruct a set of candidate species trees, given sequence data for monocopy gene families from the genomes under study. In the second phase, PrIME-DLRS, a method based on the DLRS model (Åkerborg O, Sennblad B, Arvestad L, Lagergren J. 2009. Simultaneous Bayesian gene tree reconstruction and reconciliation analysis. Proc Natl Acad Sci U S A. 106(14):5714-5719), is used for selecting the best species tree. PrIME-DLRS can handle multicopy gene families since DLRS, apart from modeling sequence evolution, models gene duplication and loss using a gene evolution model (Arvestad L, Lagergren J, Sennblad B. 2009. The gene evolution model and computing its associated probabilities. J ACM. 56(2):1-44). We evaluate MixTreEM-DLRS using synthetic and biological data, and compare its performance with a recent genome-scale species tree reconstruction method PHYLDOG (Boussau B, Szöllősi GJ, Duret L, Gouy M, Tannier E, Daubin V. 2013. Genome-scale coestimation of species and gene trees. Genome Res. 23(2):323-330) as well as with a fast parsimony-based algorithm Duptree (Wehe A, Bansal MS, Burleigh JG, Eulenstein O. 2008. Duptree: a program for large-scale phylogenetic

  9. Factors affecting the concordance between orthologous gene trees and species tree in bacteria.

    PubMed

    Castillo-Ramírez, Santiago; González, Víctor

    2008-10-30

    As originally defined, orthologous genes implied a reflection of the history of the species. In recent years, many studies have examined the concordance between orthologous gene trees and species trees in bacteria. These studies have produced contradictory results that may have been influenced by orthologous gene misidentification and artefactual phylogenetic reconstructions. Here, using a method that allows the detection and exclusion of false positives during identification of orthologous genes, we address the question of whether putative orthologous genes within bacteria really reflect the history of the species. We identified a set of 370 orthologous genes from the bacterial order Rhizobiales. Although manifesting strong vertical signal, almost every orthologous gene had a distinct phylogeny, and the most common topology among the orthologous gene trees did not correspond with the best estimate of the species tree. However, each orthologous gene tree shared an average of 70% of its bipartitions with the best estimate of the species tree. Stochastic error related to gene size affected the concordance between the best estimated of the species tree and the orthologous gene trees, although this effect was weak and distributed unevenly among the functional categories. The nodes showing the greatest discordance were those defined by the shortest internal branches in the best estimated of the species tree. Moreover, a clear bias was evident with respect to the function of the orthologous genes, and the degree of divergence among the orthologous genes appeared to be related to their functional classification. Orthologous genes do not reflect the history of the species when taken as individual markers, but they do when taken as a whole. Stochastic error affected the concordance of orthologous genes with the species tree, albeit weakly. We conclude that two important biological causes of discordance among orthologous genes are incomplete lineage sorting and functional

  10. Spatial patterns of water-dispersed seed deposition along stream riparian gradients

    PubMed Central

    Moinier, Sophie; van Gogh, Iris; Timmers, Robert; van Deelen, Joost J.; Verhoeven, Jos T. A.; Soons, Merel B.

    2017-01-01

    Riparian ecosystems along streams naturally harbour a high plant diversity with many increasingly endangered species. In our current heavily modified and fragmented catchments, many of these species are sensitive to dispersal limitation. Better understanding of riparian plant dispersal pathways is required to predict species (re-)colonization potential and improve success rates of stream and riparian zone conservation and restoration. Dispersal by water (hydrochory) is an important mechanism for longitudinal and lateral dispersal of riparian species. Crucially for recruitment potential, it also influences the elevation along the riparian hydrological gradient where seeds become deposited. Due to the complex interplay between abiotic and biotic factors, however, it remains unclear how exactly patterns in seed deposition are formed. We compared hydrochorous and non-hydrochorous seed deposition, and quantified patterns of seed deposition along the bare substrate of newly created stream riparian gradients. Water levels were monitored and seed deposition was measured with seed traps along the full range of riparian hydrological conditions (from permanently flooded to never flooded). Average seed numbers and species richness were significantly higher in flooded than in non-flooded seed traps (5.7 and 1.5 times higher, respectively). Community-weighted trait means indicated that typically water-dispersed seeds were more dominant in flooded than in non-flooded seed traps and gradually decreased in concentration from the channel to the upland. Moreover, highly buoyant seeds accumulated at the average water line, and clear elevational sorting of non-buoyant seeds occurred within the floodplain. These results establish a critical role of flooding in shaping patterns of seed deposition along the riparian gradient, delivering many seeds of typical riparian species to riparian zones and depositing them at species-specific elevations as influenced by seed traits, suggesting

  11. The role of large predators in maintaining riparian plant communities and river morphology

    NASA Astrophysics Data System (ADS)

    Beschta, Robert L.; Ripple, William J.

    2012-07-01

    Studies assessing the potential for large predators to affect, via trophic cascades, the dynamics of riparian plant communities and the morphology of river channels have been largely absent in the scientific literature. Herein, we consider the results of recent studies involving three national parks in the western United States: Yellowstone, Olympic, and Zion. Within each park, key large predators were extirpated or displaced in the early 1900s and subsequent browsing pressure by native ungulates initiated long-term declines in recruitment (i.e., growth of seedlings/sprouts into tall saplings and trees) of palatable woody species and impairment of other resources. Channel responses to browsing-suppressed riparian vegetation included increased widths of active channels via accelerated bank erosion, erosion of floodplains and erraces, increased area of unvegetated alluvium, channel incision, and increased braiding. A reduced frequency of overbank flows indicated these rivers have become increasingly disconnected from historical floodplains because of channel widening/incision. Results from Zion National Park also identified major biodiversity affects (e.g., reduced abundance of plant and animal species). Although these studies were conducted in national parks, results may have implications concerning riparian plant communities, biodiversity, and channel morphology for streams and rivers draining other public lands in the western US. It is on these lands that native and introduced ungulates have often heavily utilized riparian areas, largely in the absence of key predators, with significant consequences to plant communities and channels.

  12. Composition of riparian litter input regulates organic matter decomposition: Implications for headwater stream functioning in a managed forest landscape.

    PubMed

    Lidman, Johan; Jonsson, Micael; Burrows, Ryan M; Bundschuh, Mirco; Sponseller, Ryan A

    2017-02-01

    Although the importance of stream condition for leaf litter decomposition has been extensively studied, little is known about how processing rates change in response to altered riparian vegetation community composition. We investigated patterns of plant litter input and decomposition across 20 boreal headwater streams that varied in proportions of riparian deciduous and coniferous trees. We measured a suite of in-stream physical and chemical characteristics, as well as the amount and type of litter inputs from riparian vegetation, and related these to decomposition rates of native (alder, birch, and spruce) and introduced (lodgepole pine) litter species incubated in coarse- and fine-mesh bags. Total litter inputs ranged more than fivefold among sites and increased with the proportion of deciduous vegetation in the riparian zone. In line with differences in initial litter quality, mean decomposition rate was highest for alder, followed by birch, spruce, and lodgepole pine (12, 55, and 68% lower rates, respectively). Further, these rates were greater in coarse-mesh bags that allow colonization by macroinvertebrates. Variance in decomposition rate among sites for different species was best explained by different sets of environmental conditions, but litter-input composition (i.e., quality) was overall highly important. On average, native litter decomposed faster in sites with higher-quality litter input and (with the exception of spruce) higher concentrations of dissolved nutrients and open canopies. By contrast, lodgepole pine decomposed more rapidly in sites receiving lower-quality litter inputs. Birch litter decomposition rate in coarse-mesh bags was best predicted by the same environmental variables as in fine-mesh bags, with additional positive influences of macroinvertebrate species richness. Hence, to facilitate energy turnover in boreal headwaters, forest management with focus on conifer production should aim at increasing the presence of native deciduous

  13. Botanic gardens and the conservation of tree species.

    PubMed

    Oldfield, Sara F

    2009-11-01

    The general role of botanic gardens in plant conservation has been widely accepted since the 1970s and many threatened plant species are now in well-documented living collections and seed banks. Conserving tree species in ex situ collections still presents particular challenges. Many trees have so-called 'recalcitrant' seeds that cannot be stored in conventional seed banks and the sheer size of living trees restricts the number of individuals of a particular species that can be grown in a botanic garden. Even if space is available, is ex situ conservation a desirable option and how does this compare with conserving tree species in their natural habitats? In reality, conservation action for globally threatened tree species, by either in situ or ex situ means, remains inadequate and steps should be taken to combine approaches to prevent the urgent loss of tree species worldwide.

  14. An estimate of the number of tropical tree species

    PubMed Central

    Slik, J. W. Ferry; Arroyo-Rodríguez, Víctor; Aiba, Shin-Ichiro; Alvarez-Loayza, Patricia; Alves, Luciana F.; Ashton, Peter; Balvanera, Patricia; Bastian, Meredith L.; Bellingham, Peter J.; van den Berg, Eduardo; Bernacci, Luis; da Conceição Bispo, Polyanna; Blanc, Lilian; Böhning-Gaese, Katrin; Boeckx, Pascal; Bongers, Frans; Boyle, Brad; Bradford, Matt; Brearley, Francis Q.; Breuer-Ndoundou Hockemba, Mireille; Bunyavejchewin, Sarayudh; Calderado Leal Matos, Darley; Castillo-Santiago, Miguel; Catharino, Eduardo L. M.; Chai, Shauna-Lee; Chen, Yukai; Colwell, Robert K.; Chazdon, Robin L.; Clark, Connie; Clark, David B.; Clark, Deborah A.; Culmsee, Heike; Damas, Kipiro; Dattaraja, Handanakere S.; Dauby, Gilles; Davidar, Priya; DeWalt, Saara J.; Doucet, Jean-Louis; Duque, Alvaro; Durigan, Giselda; Eichhorn, Karl A. O.; Eisenlohr, Pedro V.; Eler, Eduardo; Ewango, Corneille; Farwig, Nina; Feeley, Kenneth J.; Ferreira, Leandro; Field, Richard; de Oliveira Filho, Ary T.; Fletcher, Christine; Forshed, Olle; Franco, Geraldo; Fredriksson, Gabriella; Gillespie, Thomas; Gillet, Jean-François; Amarnath, Giriraj; Griffith, Daniel M.; Grogan, James; Gunatilleke, Nimal; Harris, David; Harrison, Rhett; Hector, Andy; Homeier, Jürgen; Imai, Nobuo; Itoh, Akira; Jansen, Patrick A.; Joly, Carlos A.; de Jong, Bernardus H. J.; Kartawinata, Kuswata; Kearsley, Elizabeth; Kelly, Daniel L.; Kenfack, David; Kessler, Michael; Kitayama, Kanehiro; Kooyman, Robert; Larney, Eileen; Laumonier, Yves; Laurance, Susan; Laurance, William F.; Lawes, Michael J.; do Amaral, Ieda Leao; Letcher, Susan G.; Lindsell, Jeremy; Lu, Xinghui; Mansor, Asyraf; Marjokorpi, Antti; Martin, Emanuel H.; Meilby, Henrik; Melo, Felipe P. L.; Metcalfe, Daniel J.; Medjibe, Vincent P.; Metzger, Jean Paul; Millet, Jerome; Mohandass, D.; Montero, Juan C.; de Morisson Valeriano, Márcio; Mugerwa, Badru; Nagamasu, Hidetoshi; Nilus, Reuben; Ochoa-Gaona, Susana; Onrizal; Page, Navendu; Parolin, Pia; Parren, Marc; Parthasarathy, Narayanaswamy; Paudel, Ekananda; Permana, Andrea; Piedade, Maria T. F.; Pitman, Nigel C. A.; Poorter, Lourens; Poulsen, Axel D.; Poulsen, John; Powers, Jennifer; Prasad, Rama C.; Puyravaud, Jean-Philippe; Razafimahaimodison, Jean-Claude; Reitsma, Jan; dos Santos, João Roberto; Roberto Spironello, Wilson; Romero-Saltos, Hugo; Rovero, Francesco; Rozak, Andes Hamuraby; Ruokolainen, Kalle; Rutishauser, Ervan; Saiter, Felipe; Saner, Philippe; Santos, Braulio A.; Santos, Fernanda; Sarker, Swapan K.; Satdichanh, Manichanh; Schmitt, Christine B.; Schöngart, Jochen; Schulze, Mark; Suganuma, Marcio S.; Sheil, Douglas; da Silva Pinheiro, Eduardo; Sist, Plinio; Stevart, Tariq; Sukumar, Raman; Sun, I.-Fang; Sunderland, Terry; Suresh, H. S.; Suzuki, Eizi; Tabarelli, Marcelo; Tang, Jangwei; Targhetta, Natália; Theilade, Ida; Thomas, Duncan W.; Tchouto, Peguy; Hurtado, Johanna; Valencia, Renato; van Valkenburg, Johan L. C. H.; Van Do, Tran; Vasquez, Rodolfo; Verbeeck, Hans; Adekunle, Victor; Vieira, Simone A.; Webb, Campbell O.; Whitfeld, Timothy; Wich, Serge A.; Williams, John; Wittmann, Florian; Wöll, Hannsjoerg; Yang, Xiaobo; Adou Yao, C. Yves; Yap, Sandra L.; Yoneda, Tsuyoshi; Zahawi, Rakan A.; Zakaria, Rahmad; Zang, Runguo; de Assis, Rafael L.; Garcia Luize, Bruno; Venticinque, Eduardo M.

    2015-01-01

    The high species richness of tropical forests has long been recognized, yet there remains substantial uncertainty regarding the actual number of tropical tree species. Using a pantropical tree inventory database from closed canopy forests, consisting of 657,630 trees belonging to 11,371 species, we use a fitted value of Fisher’s alpha and an approximate pantropical stem total to estimate the minimum number of tropical forest tree species to fall between ∼40,000 and ∼53,000, i.e., at the high end of previous estimates. Contrary to common assumption, the Indo-Pacific region was found to be as species-rich as the Neotropics, with both regions having a minimum of ∼19,000–25,000 tree species. Continental Africa is relatively depauperate with a minimum of ∼4,500–6,000 tree species. Very few species are shared among the African, American, and the Indo-Pacific regions. We provide a methodological framework for estimating species richness in trees that may help refine species richness estimates of tree-dependent taxa. PMID:26034279

  15. An estimate of the number of tropical tree species.

    PubMed

    Slik, J W Ferry; Arroyo-Rodríguez, Víctor; Aiba, Shin-Ichiro; Alvarez-Loayza, Patricia; Alves, Luciana F; Ashton, Peter; Balvanera, Patricia; Bastian, Meredith L; Bellingham, Peter J; van den Berg, Eduardo; Bernacci, Luis; da Conceição Bispo, Polyanna; Blanc, Lilian; Böhning-Gaese, Katrin; Boeckx, Pascal; Bongers, Frans; Boyle, Brad; Bradford, Matt; Brearley, Francis Q; Breuer-Ndoundou Hockemba, Mireille; Bunyavejchewin, Sarayudh; Calderado Leal Matos, Darley; Castillo-Santiago, Miguel; Catharino, Eduardo L M; Chai, Shauna-Lee; Chen, Yukai; Colwell, Robert K; Chazdon, Robin L; Robin, Chazdon L; Clark, Connie; Clark, David B; Clark, Deborah A; Culmsee, Heike; Damas, Kipiro; Dattaraja, Handanakere S; Dauby, Gilles; Davidar, Priya; DeWalt, Saara J; Doucet, Jean-Louis; Duque, Alvaro; Durigan, Giselda; Eichhorn, Karl A O; Eisenlohr, Pedro V; Eler, Eduardo; Ewango, Corneille; Farwig, Nina; Feeley, Kenneth J; Ferreira, Leandro; Field, Richard; de Oliveira Filho, Ary T; Fletcher, Christine; Forshed, Olle; Franco, Geraldo; Fredriksson, Gabriella; Gillespie, Thomas; Gillet, Jean-François; Amarnath, Giriraj; Griffith, Daniel M; Grogan, James; Gunatilleke, Nimal; Harris, David; Harrison, Rhett; Hector, Andy; Homeier, Jürgen; Imai, Nobuo; Itoh, Akira; Jansen, Patrick A; Joly, Carlos A; de Jong, Bernardus H J; Kartawinata, Kuswata; Kearsley, Elizabeth; Kelly, Daniel L; Kenfack, David; Kessler, Michael; Kitayama, Kanehiro; Kooyman, Robert; Larney, Eileen; Laumonier, Yves; Laurance, Susan; Laurance, William F; Lawes, Michael J; Amaral, Ieda Leao do; Letcher, Susan G; Lindsell, Jeremy; Lu, Xinghui; Mansor, Asyraf; Marjokorpi, Antti; Martin, Emanuel H; Meilby, Henrik; Melo, Felipe P L; Metcalfe, Daniel J; Medjibe, Vincent P; Metzger, Jean Paul; Millet, Jerome; Mohandass, D; Montero, Juan C; de Morisson Valeriano, Márcio; Mugerwa, Badru; Nagamasu, Hidetoshi; Nilus, Reuben; Ochoa-Gaona, Susana; Onrizal; Page, Navendu; Parolin, Pia; Parren, Marc; Parthasarathy, Narayanaswamy; Paudel, Ekananda; Permana, Andrea; Piedade, Maria T F; Pitman, Nigel C A; Poorter, Lourens; Poulsen, Axel D; Poulsen, John; Powers, Jennifer; Prasad, Rama C; Puyravaud, Jean-Philippe; Razafimahaimodison, Jean-Claude; Reitsma, Jan; Dos Santos, João Roberto; Roberto Spironello, Wilson; Romero-Saltos, Hugo; Rovero, Francesco; Rozak, Andes Hamuraby; Ruokolainen, Kalle; Rutishauser, Ervan; Saiter, Felipe; Saner, Philippe; Santos, Braulio A; Santos, Fernanda; Sarker, Swapan K; Satdichanh, Manichanh; Schmitt, Christine B; Schöngart, Jochen; Schulze, Mark; Suganuma, Marcio S; Sheil, Douglas; da Silva Pinheiro, Eduardo; Sist, Plinio; Stevart, Tariq; Sukumar, Raman; Sun, I-Fang; Sunderland, Terry; Sunderand, Terry; Suresh, H S; Suzuki, Eizi; Tabarelli, Marcelo; Tang, Jangwei; Targhetta, Natália; Theilade, Ida; Thomas, Duncan W; Tchouto, Peguy; Hurtado, Johanna; Valencia, Renato; van Valkenburg, Johan L C H; Van Do, Tran; Vasquez, Rodolfo; Verbeeck, Hans; Adekunle, Victor; Vieira, Simone A; Webb, Campbell O; Whitfeld, Timothy; Wich, Serge A; Williams, John; Wittmann, Florian; Wöll, Hannsjoerg; Yang, Xiaobo; Adou Yao, C Yves; Yap, Sandra L; Yoneda, Tsuyoshi; Zahawi, Rakan A; Zakaria, Rahmad; Zang, Runguo; de Assis, Rafael L; Garcia Luize, Bruno; Venticinque, Eduardo M

    2015-06-16

    The high species richness of tropical forests has long been recognized, yet there remains substantial uncertainty regarding the actual number of tropical tree species. Using a pantropical tree inventory database from closed canopy forests, consisting of 657,630 trees belonging to 11,371 species, we use a fitted value of Fisher's alpha and an approximate pantropical stem total to estimate the minimum number of tropical forest tree species to fall between ∼ 40,000 and ∼ 53,000, i.e., at the high end of previous estimates. Contrary to common assumption, the Indo-Pacific region was found to be as species-rich as the Neotropics, with both regions having a minimum of ∼ 19,000-25,000 tree species. Continental Africa is relatively depauperate with a minimum of ∼ 4,500-6,000 tree species. Very few species are shared among the African, American, and the Indo-Pacific regions. We provide a methodological framework for estimating species richness in trees that may help refine species richness estimates of tree-dependent taxa.

  16. Tree species, tree genotypes and tree genotypic diversity levels affect microbe-mediated soil ecosystem functions in a subtropical forest.

    PubMed

    Purahong, Witoon; Durka, Walter; Fischer, Markus; Dommert, Sven; Schöps, Ricardo; Buscot, François; Wubet, Tesfaye

    2016-11-18

    Tree species identity and tree genotypes contribute to the shaping of soil microbial communities. However, knowledge about how these two factors influence soil ecosystem functions is still lacking. Furthermore, in forest ecosystems tree genotypes co-occur and interact with each other, thus the effects of tree genotypic diversity on soil ecosystem functions merit attention. Here we investigated the effects of tree species, tree genotypes and genotypic diversity levels, alongside soil physicochemical properties, on the overall and specific soil enzyme activity patterns. Our results indicate that tree species identity, tree genotypes and genotypic diversity level have significant influences on overall and specific soil enzyme activity patterns. These three factors influence soil enzyme patterns partly through effects on soil physicochemical properties and substrate quality. Variance partitioning showed that tree species identity, genotypic diversity level, pH and water content all together explained ~30% variations in the overall patterns of soil enzymes. However, we also found that the responses of soil ecosystem functions to tree genotypes and genotypic diversity are complex, being dependent on tree species identity and controlled by multiple factors. Our study highlights the important of inter- and intra-specific variations in tree species in shaping soil ecosystem functions in a subtropical forest.

  17. Tree species, tree genotypes and tree genotypic diversity levels affect microbe-mediated soil ecosystem functions in a subtropical forest

    PubMed Central

    Purahong, Witoon; Durka, Walter; Fischer, Markus; Dommert, Sven; Schöps, Ricardo; Buscot, François; Wubet, Tesfaye

    2016-01-01

    Tree species identity and tree genotypes contribute to the shaping of soil microbial communities. However, knowledge about how these two factors influence soil ecosystem functions is still lacking. Furthermore, in forest ecosystems tree genotypes co-occur and interact with each other, thus the effects of tree genotypic diversity on soil ecosystem functions merit attention. Here we investigated the effects of tree species, tree genotypes and genotypic diversity levels, alongside soil physicochemical properties, on the overall and specific soil enzyme activity patterns. Our results indicate that tree species identity, tree genotypes and genotypic diversity level have significant influences on overall and specific soil enzyme activity patterns. These three factors influence soil enzyme patterns partly through effects on soil physicochemical properties and substrate quality. Variance partitioning showed that tree species identity, genotypic diversity level, pH and water content all together explained ~30% variations in the overall patterns of soil enzymes. However, we also found that the responses of soil ecosystem functions to tree genotypes and genotypic diversity are complex, being dependent on tree species identity and controlled by multiple factors. Our study highlights the important of inter- and intra-specific variations in tree species in shaping soil ecosystem functions in a subtropical forest. PMID:27857198

  18. Riparian plant community responses to increased flooding: a meta-analysis.

    PubMed

    Garssen, Annemarie G; Baattrup-Pedersen, Annette; Voesenek, Laurentius A C J; Verhoeven, Jos T A; Soons, Merel B

    2015-08-01

    A future higher risk of severe flooding of streams and rivers has been projected to change riparian plant community composition and species richness, but the extent and direction of the expected change remain uncertain. We conducted a meta-analysis to synthesize globally available experimental evidence and assess the effects of increased flooding on (1) riparian adult plant and seedling survival, (2) riparian plant biomass and (3) riparian plant species composition and richness. We evaluated which plant traits are of key importance for the response of riparian plant species to flooding. We identified and analysed 53 papers from ISI Web of Knowledge which presented quantitative experimental results on flooding treatments and corresponding control situations. Our meta-analysis demonstrated how longer duration of flooding, greater depth of flooding and, particularly, their combination reduce seedling survival of most riparian species. Plant height above water level, ability to elongate shoots and plasticity in root porosity were decisive for adult plant survival and growth during longer periods of flooding. Both 'quiescence' and 'escape' proved to be successful strategies promoting riparian plant survival, which was reflected in the wide variation in survival (full range between 0 and 100%) under fully submerged conditions, while plants that protrude above the water level (>20 cm) almost all survive. Our survey confirmed that the projected increase in the duration and depth of flooding periods is sufficient to result in species shifts. These shifts may lead to increased or decreased riparian species richness depending on the nutrient, climatic and hydrological status of the catchment. Species richness was generally reduced at flooded sites in nutrient-rich catchments and sites that previously experienced relatively stable hydrographs (e.g. rain-fed lowland streams). Species richness usually increased at sites in desert and semi-arid climate regions (e.g. intermittent

  19. STBase: one million species trees for comparative biology.

    PubMed

    McMahon, Michelle M; Deepak, Akshay; Fernández-Baca, David; Boss, Darren; Sanderson, Michael J

    2015-01-01

    Comprehensively sampled phylogenetic trees provide the most compelling foundations for strong inferences in comparative evolutionary biology. Mismatches are common, however, between the taxa for which comparative data are available and the taxa sampled by published phylogenetic analyses. Moreover, many published phylogenies are gene trees, which cannot always be adapted immediately for species level comparisons because of discordance, gene duplication, and other confounding biological processes. A new database, STBase, lets comparative biologists quickly retrieve species level phylogenetic hypotheses in response to a query list of species names. The database consists of 1 million single- and multi-locus data sets, each with a confidence set of 1000 putative species trees, computed from GenBank sequence data for 413,000 eukaryotic taxa. Two bodies of theoretical work are leveraged to aid in the assembly of multi-locus concatenated data sets for species tree construction. First, multiply labeled gene trees are pruned to conflict-free singly-labeled species-level trees that can be combined between loci. Second, impacts of missing data in multi-locus data sets are ameliorated by assembling only decisive data sets. Data sets overlapping with the user's query are ranked using a scheme that depends on user-provided weights for tree quality and for taxonomic overlap of the tree with the query. Retrieval times are independent of the size of the database, typically a few seconds. Tree quality is assessed by a real-time evaluation of bootstrap support on just the overlapping subtree. Associated sequence alignments, tree files and metadata can be downloaded for subsequent analysis. STBase provides a tool for comparative biologists interested in exploiting the most relevant sequence data available for the taxa of interest. It may also serve as a prototype for future species tree oriented databases and as a resource for assembly of larger species phylogenies from precomputed

  20. STBase: One Million Species Trees for Comparative Biology

    PubMed Central

    McMahon, Michelle M.; Deepak, Akshay; Fernández-Baca, David; Boss, Darren; Sanderson, Michael J.

    2015-01-01

    Comprehensively sampled phylogenetic trees provide the most compelling foundations for strong inferences in comparative evolutionary biology. Mismatches are common, however, between the taxa for which comparative data are available and the taxa sampled by published phylogenetic analyses. Moreover, many published phylogenies are gene trees, which cannot always be adapted immediately for species level comparisons because of discordance, gene duplication, and other confounding biological processes. A new database, STBase, lets comparative biologists quickly retrieve species level phylogenetic hypotheses in response to a query list of species names. The database consists of 1 million single- and multi-locus data sets, each with a confidence set of 1000 putative species trees, computed from GenBank sequence data for 413,000 eukaryotic taxa. Two bodies of theoretical work are leveraged to aid in the assembly of multi-locus concatenated data sets for species tree construction. First, multiply labeled gene trees are pruned to conflict-free singly-labeled species-level trees that can be combined between loci. Second, impacts of missing data in multi-locus data sets are ameliorated by assembling only decisive data sets. Data sets overlapping with the user’s query are ranked using a scheme that depends on user-provided weights for tree quality and for taxonomic overlap of the tree with the query. Retrieval times are independent of the size of the database, typically a few seconds. Tree quality is assessed by a real-time evaluation of bootstrap support on just the overlapping subtree. Associated sequence alignments, tree files and metadata can be downloaded for subsequent analysis. STBase provides a tool for comparative biologists interested in exploiting the most relevant sequence data available for the taxa of interest. It may also serve as a prototype for future species tree oriented databases and as a resource for assembly of larger species phylogenies from precomputed

  1. Regeneration of Salicaceae riparian forests in the Northern Hemisphere: A new framework and management tool

    USGS Publications Warehouse

    Gonzalez, Eduardo; Martinez-Fernandez, Vanesa; Shafroth, Patrick B.; Sher, Anna A.; Henry, Annie L.; Garofano-Gomez, Virginia; Corenblit, Dov

    2018-01-01

    Human activities on floodplains have severely disrupted the regeneration of foundation riparian shrub and tree species of the Salicaceae family (Populus and Salix spp.) throughout the Northern Hemisphere. Restoration ecologists initially tackled this problem from a terrestrial perspective that emphasized planting. More recently, floodplain restoration activities have embraced an aquatic perspective, inspired by the expanding practice of managing river flows to improve river health (environmental flows). However, riparian Salicaceae species occupy floodplain and riparian areas, which lie at the interface of both terrestrial and aquatic ecosystems along watercourses. Thus, their regeneration depends on a complex interaction of hydrologic and geomorphic processes that have shaped key life-cycle requirements for seedling establishment. Ultimately, restoration needs to integrate these concepts to succeed. However, while regeneration of Salicaceae is now reasonably well-understood, the literature reporting restoration actions on Salicaceae regeneration is sparse, and a specific theoretical framework is still missing. Here, we have reviewed 105 peer-reviewed published experiences in restoration of Salicaceae forests, including 91 projects in 10 world regions, to construct a decision tree to inform restoration planning through explicit links between the well-studied biophysical requirements of Salicaceaeregeneration and 17 specific restoration actions, the most popular being planting (in 55% of the projects), land contouring (30%), removal of competing vegetation (30%), site selection (26%), and irrigation (24%). We also identified research gaps related to Salicaceae forest restoration and discuss alternative, innovative and feasible approaches that incorporate the human component.

  2. Regeneration of Salicaceae riparian forests in the Northern Hemisphere: A new framework and management tool.

    PubMed

    González, Eduardo; Martínez-Fernández, Vanesa; Shafroth, Patrick B; Sher, Anna A; Henry, Annie L; Garófano-Gómez, Virginia; Corenblit, Dov

    2018-07-15

    Human activities on floodplains have severely disrupted the regeneration of foundation riparian shrub and tree species of the Salicaceae family (Populus and Salix spp.) throughout the Northern Hemisphere. Restoration ecologists initially tackled this problem from a terrestrial perspective that emphasized planting. More recently, floodplain restoration activities have embraced an aquatic perspective, inspired by the expanding practice of managing river flows to improve river health (environmental flows). However, riparian Salicaceae species occupy floodplain and riparian areas, which lie at the interface of both terrestrial and aquatic ecosystems along watercourses. Thus, their regeneration depends on a complex interaction of hydrologic and geomorphic processes that have shaped key life-cycle requirements for seedling establishment. Ultimately, restoration needs to integrate these concepts to succeed. However, while regeneration of Salicaceae is now reasonably well-understood, the literature reporting restoration actions on Salicaceae regeneration is sparse, and a specific theoretical framework is still missing. Here, we have reviewed 105 peer-reviewed published experiences in restoration of Salicaceae forests, including 91 projects in 10 world regions, to construct a decision tree to inform restoration planning through explicit links between the well-studied biophysical requirements of Salicaceae regeneration and 17 specific restoration actions, the most popular being planting (in 55% of the projects), land contouring (30%), removal of competing vegetation (30%), site selection (26%), and irrigation (24%). We also identified research gaps related to Salicaceae forest restoration and discuss alternative, innovative and feasible approaches that incorporate the human component. Copyright © 2018 Elsevier Ltd. All rights reserved.

  3. Riparian vegetation dynamics and evapotranspiration in the riparian corridor in the delta of the Colorado River, Mexico.

    PubMed

    Nagler, Pamela L; Glenn, Edward P; Hinojosa-Huerta, Osvel; Zamora, Francisco; Howard, Keith

    2008-09-01

    Like other great desert rivers, the Colorado River in the United States and Mexico is highly regulated to provide water for human use. No water is officially allotted to support the natural ecosystems in the delta of the river in Mexico. However, precipitation is inherently variable in this watershed, and from 1981-2004, 15% of the mean annual flow of the Lower Colorado River has entered the riparian corridor below the last diversion point for water in Mexico. These flows include flood releases from US dams and much smaller administrative spills released back to the river from irrigators in the US and Mexico. These flows have germinated new cohorts of native cottonwood and willow trees and have established an active aquatic ecosystem in the riparian corridor in Mexico. We used ground and remote-sensing methods to determine the composition and fractional cover of the vegetation in the riparian corridor, its annual water consumption, and the sources of water that support the ecosystem. The study covered the period 2000-2004, a flood year followed by 4 dry years. The riparian corridor occupies 30,000 ha between flood control levees in Mexico. Annual evapotranspiration (ET), estimated by Moderate Resolution Imaging Spectrometer (MODIS) satellite imagery calibrated against moisture flux tower data, was about 1.1 m yr(-1) and was fairly constant throughout the study period despite a paucity of surface flows 2001-2004. Total ET averaged 3.4 x 10(8)m(3)yr(-1), about 15% of Colorado River water entering Mexico from the US Surface flows could have played only a small part in supporting these high ET losses. We conclude that the riparian ET is supported mainly by the shallow regional aquifer, derived from agricultural return flows, that approaches the surface in the riparian zone. Nevertheless, surface flows are important in germinating cohorts of native trees, in washing salts from the soil and aquifer, and in providing aquatic habitat, thereby enriching the habitat value of

  4. Riparian vegetation dynamics and evapotranspiration in the riparian corridor in the delta of the Colorado River, Mexico

    USGS Publications Warehouse

    Nagler, P.L.; Glenn, E.P.; Hinojosa-Huerta, O.; Zamora, F.; Howard, K. J.

    2008-01-01

    Like other great desert rivers, the Colorado River in the United States and Mexico is highly regulated to provide water for human use. No water is officially allotted to support the natural ecosystems in the delta of the river in Mexico. However, precipitation is inherently variable in this watershed, and from 1981-2004, 15% of the mean annual flow of the Lower Colorado River has entered the riparian corridor below the last diversion point for water in Mexico. These flows include flood releases from US dams and much smaller administrative spills released back to the river from irrigators in the US and Mexico. These flows have germinated new cohorts of native cottonwood and willow trees and have established an active aquatic ecosystem in the riparian corridor in Mexico. We used ground and remote-sensing methods to determine the composition and fractional cover of the vegetation in the riparian corridor, its annual water consumption, and the sources of water that support the ecosystem. The study covered the period 2000-2004, a flood year followed by 4 dry years. The riparian corridor occupies 30,000 ha between flood control levees in Mexico. Annual evapotranspiration (ET), estimated by Moderate Resolution Imaging Spectrometer (MODIS) satellite imagery calibrated against moisture flux tower data, was about 1.1 m yr-1 and was fairly constant throughout the study period despite a paucity of surface flows 2001-2004. Total ET averaged 3.4??108 m3 yr-1, about 15% of Colorado River water entering Mexico from the US Surface flows could have played only a small part in supporting these high ET losses. We conclude that the riparian ET is supported mainly by the shallow regional aquifer, derived from agricultural return flows, that approaches the surface in the riparian zone. Nevertheless, surface flows are important in germinating cohorts of native trees, in washing salts from the soil and aquifer, and in providing aquatic habitat, thereby enriching the habitat value of the

  5. Tamarisk biocontrol using tamarisk beetles: Potential consequences for riparian birds in the southwestern United States

    USGS Publications Warehouse

    Paxton, E.H.; Theimer, T.C.; Sogge, M.K.

    2011-01-01

    The tamarisk beetle (Diorhabda spp.), a non-native biocontrol agent, has been introduced to eradicate tamarisk (Tamarix spp.), a genus of non-native tree that has become a dominant component of riparian woodlands in the southwestern United States. Tamarisk beetles have the potential to spread widely and defoliate large expanses of tamarisk habitat, but the effects of such a widespread loss of riparian vegetation on birds remains unknown. We reviewed literature on the effects of other defoliating insects on birds to investigate the potential for tamarisk beetles to affect birds positively or negatively by changing food abundance and vegetation structure. We then combined data on the temporal patterns of tamarisk defoliation by beetles with nest productivity of a wellstudied riparian obligate, the Southwestern Willow Flycatcher (Empidonax traillii extimus), to simulate the potential demographic consequences of beetle defoliation on breeding riparian birds in both the short and long term. Our results highlight that the effects of tamarisk biocontrol on birds will likely vary by species and population, depending upon its sensitivity to seasonal defoliation by beetles and net loss of riparian habitat due to tamarisk mortality. Species with restricted distributions that include areas dominated by tamarisk may be negatively affected both in the short and long term. The rate of regeneration and/or restoration of native cottonwoods (Populus spp.) and willows (Salix spp.) relative to the rate of tamarisk loss will be critical in determining the long-term effect of this large-scale ecological experiment. ?? The Cooper Ornithological Society 2011.

  6. Theory, methods and tools for determining environmental flows for riparian vegetation: Riparian vegetation-flow response guilds

    USGS Publications Warehouse

    Merritt, D.M.; Scott, M.L.; Leroy, Poff N.; Auble, G.T.; Lytle, D.A.

    2010-01-01

    Riparian vegetation composition, structure and abundance are governed to a large degree by river flow regime and flow-mediated fluvial processes. Streamflow regime exerts selective pressures on riparian vegetation, resulting in adaptations (trait syndromes) to specific flow attributes. Widespread modification of flow regimes by humans has resulted in extensive alteration of riparian vegetation communities. Some of the negative effects of altered flow regimes on vegetation may be reversed by restoring components of the natural flow regime. 2. Models have been developed that quantitatively relate components of the flow regime to attributes of riparian vegetation at the individual, population and community levels. Predictive models range from simple statistical relationships, to more complex stochastic matrix population models and dynamic simulation models. Of the dozens of predictive models reviewed here, most treat one or a few species, have many simplifying assumptions such as stable channel form, and do not specify the time-scale of response. In many cases, these models are very effective in developing alternative streamflow management plans for specific river reaches or segments but are not directly transferable to other rivers or other regions. 3. A primary goal in riparian ecology is to develop general frameworks for prediction of vegetation response to changing environmental conditions. The development of riparian vegetation-flow response guilds offers a framework for transferring information from rivers where flow standards have been developed to maintain desirable vegetation attributes, to rivers with little or no existing information. 4. We propose to organise riparian plants into non-phylogenetic groupings of species with shared traits that are related to components of hydrologic regime: life history, reproductive strategy, morphology, adaptations to fluvial disturbance and adaptations to water availability. Plants from any river or region may be grouped

  7. How do riparian woody seedlings survive seasonal drought?

    PubMed

    Stella, John C; Battles, John J

    2010-11-01

    In semi-arid regions, a major population limitation for riparian trees is seedling desiccation during the dry season that follows annual spring floods. We investigated the stress response of first-year pioneer riparian seedlings to experimental water table declines (0, 1 and 3 cm day(-1)), focusing on the three dominant cottonwood and willows (family Salicaceae) in California's San Joaquin Basin. We analyzed growth and belowground allocation response to water stress, and used logistic regression to determine if these traits had an influence on individual survival. The models indicate that high root growth (>3 mm day(-1)) and low shoot:root ratios (<1.5 g g(-1)) strongly predicted survival, but there was no evidence that plants increased belowground allocation in response to drawdown. Leaf δ(13)C values shifted most for the best-surviving species (net change of +3.5 per mil from -30.0 ± 0.3 control values for Goodding's willow, Salix gooddingii), implying an important role of increased water-use efficiency for surviving water stress. Both S. gooddingii and sandbar willow (S. exigua) reduced leaf size from controls, whereas Fremont cottonwood (Populus fremontii) sustained a 29% reduction in specific leaf area (from 13.4 to 9.6 m(2) kg(-1)). The functional responses exhibited by Goodding's willow, the more drought-tolerant species, may play a role in its greater relative abundance in dry regions such as the San Joaquin Basin. This study highlights the potential for a shift in riparian forest composition. Under a future drier climate regime or under reduced regulated river flows, our results suggest that willow establishment will be favored over cottonwood.

  8. Stream and riparian management for freshwater turtles.

    PubMed

    Bodie, J R

    2001-08-01

    The regulation and management of stream ecosystems worldwide have led to irreversible loss of wildlife species. Due to recent scrutiny of water policy and dam feasibility, there is an urgent need for fundamental research on the biotic integrity of streams and riparian zones. Although riverine turtles rely on stream and riparian zones to complete their life cycle, are vital producers and consumers, and are declining worldwide, they have received relatively little attention. I review the literature on the impacts of contemporary stream management on freshwater turtles. Specifically, I summarize and discuss 10 distinct practices that produce five potential biological repercussions. I then focus on the often-overlooked use of riparian zones by freshwater turtles, calculate a biologically determined riparian width, and offer recommendations for ecosystem management. Migration data were summarized on 10 species from eight US states and four countries. A riparian zone encompassing the majority of freshwater turtle migrations would need to span 150 m from the stream edge. Freshwater turtles primarily chose high, open sandy habitats to nest. Nests in North America contained eggs and hatchlings during April through September and often through the winter. In addition, freshwater turtles utilized diverse riparian habitats for feeding, nesting, and overwintering. Additional documentation of stream and riparian habitat use by turtles is needed.

  9. Indirect interactions among tropical tree species through shared rodent seed predators: a novel mechanism of tree species coexistence.

    PubMed

    Garzon-Lopez, Carol X; Ballesteros-Mejia, Liliana; Ordoñez, Alejandro; Bohlman, Stephanie A; Olff, Han; Jansen, Patrick A

    2015-08-01

    The coexistence of numerous tree species in tropical forests is commonly explained by negative dependence of recruitment on the conspecific seed and tree density due to specialist natural enemies that attack seeds and seedlings ('Janzen-Connell' effects). Less known is whether guilds of shared seed predators can induce a negative dependence of recruitment on the density of different species of the same plant functional group. We studied 54 plots in tropical forest on Barro Colorado Island, Panama, with contrasting mature tree densities of three coexisting large seeded tree species with shared seed predators. Levels of seed predation were far better explained by incorporating seed densities of all three focal species than by conspecific seed density alone. Both positive and negative density dependencies were observed for different species combinations. Thus, indirect interactions via shared seed predators can either promote or reduce the coexistence of different plant functional groups in tropical forest. © 2015 John Wiley & Sons Ltd/CNRS.

  10. Effects of land use practices on western riparian ecosystems

    Treesearch

    David J. Krueper

    1993-01-01

    Riparian ecosystems are among the rarest and most sensitive habitat types in the western United States. Riparian habitat is critical for up to 80% of terrestrial vertebrate species, and is especially important in the arid West. Estimates have placed riparian habitat loss at greater than 95% in most western states. Impacts to riparian ecosystems are reviewed along with...

  11. Evidence of ecotypic differentiation between populations of the tree species Parapiptadenia rigida due to flooding.

    PubMed

    Silva, D C G; Carvalho, M C C G; Ruas, P M; Ruas, C F; Medri, M E

    2010-05-04

    The tree species Parapiptadenia rigida, native to southern South America, is frequently used in reforestation of riverbanks in Brazil. This tree is also a source of gums, tannins and essential oils, and it has some medicinal uses. We investigated flooding tolerance and genetic diversity in two populations of P. rigida; one of them was naturally exposed to flooding. Plants derived from seeds collected from each population were submitted to variable periods of experimental waterlogging and submergence. Waterlogging promoted a decrease in biomass and structural adjustments, such as superficial roots with aerenchyma and hypertrophied lenticels, that contribute to increase atmospheric oxygen intake. Plants that were submerged had an even greater reduction in biomass and a high mortality rate (40%). The two populations varied significantly in their RAPD marker profiles, in their ability to produce aerenchyma when waterlogged and to survive when submerged, suggesting ecotypic differentiation between them. Hence, the seasonal flooding that has been challenging the tropical riparian forest appears to be genetically modifying the P. rigida populations exposed to it by selecting individuals with increased ability to live under this condition.

  12. Harvesting Options for Riparian Areas

    Treesearch

    James A. Mattson; John E. Baumgras; Charles R. Blinn; Michael A. Thompson

    1999-01-01

    As the chapters in this book demonstate, forested riparian areas provide many important functions and values, including wildlife habitat, recreation, water, timber production, and cultural resources. The high soil moisture and nutrient availability in these areas make them highly productive sites for plant and animal life, including trees, and this, coupled with the...

  13. The ghosts of trees past: savanna trees create enduring legacies in plant species composition.

    PubMed

    Stahlheber, Karen A; Crispin, Kimberly L; Anton, Cassidy; D'Antonio, Carla M

    2015-09-01

    Isolated trees in savannas worldwide are known to modify their local environment and interact directly with neighboring plants. Less is known about how related tree species differ in their impacts on surrounding communities, how the effects of trees vary between years, and how composition might change following loss of the tree. To address these knowledge gaps, we explored the following questions: How do savanna trees influence the surrounding composition of herbaceous plants? Is the influence of trees consistent across different species and years? How does this change following the death of the tree? We surveyed herbaceous species composition and environmental attributes surrounding living and dead evergreen and deciduous Quercus trees in California (USA) savannas across several years that differed in their total precipitation. Oak trees of all species created distinct, homogenous understory communities dominated by exotic grasses across several sites. The composition of the low-diversity understory communities showed less interannual variation than open grassland, despite a two-fold difference in precipitation between the driest and wettest year. Vegetation composition was correlated with variation in soil properties, which were strongly affected by trees. Oaks also influenced the communities beyond the edge of the crown, but this depended on site and oak species. Low-diversity understory communities persisted up to 43 years following the death of the tree. A gradual decline in the effect of trees on the physical, environment following death did not result in vegetation becoming more similar to open grassland over time. The presence of long-lasting legacies of past tree crowns highlights the difficulty of assigning control of the current distribution of herbaceous species in grassland to their contemporary environment.

  14. Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood.

    PubMed

    Wu, Yufeng

    2012-03-01

    Incomplete lineage sorting can cause incongruence between the phylogenetic history of genes (the gene tree) and that of the species (the species tree), which can complicate the inference of phylogenies. In this article, I present a new coalescent-based algorithm for species tree inference with maximum likelihood. I first describe an improved method for computing the probability of a gene tree topology given a species tree, which is much faster than an existing algorithm by Degnan and Salter (2005). Based on this method, I develop a practical algorithm that takes a set of gene tree topologies and infers species trees with maximum likelihood. This algorithm searches for the best species tree by starting from initial species trees and performing heuristic search to obtain better trees with higher likelihood. This algorithm, called STELLS (which stands for Species Tree InfErence with Likelihood for Lineage Sorting), has been implemented in a program that is downloadable from the author's web page. The simulation results show that the STELLS algorithm is more accurate than an existing maximum likelihood method for many datasets, especially when there is noise in gene trees. I also show that the STELLS algorithm is efficient and can be applied to real biological datasets. © 2011 The Author. Evolution© 2011 The Society for the Study of Evolution.

  15. Minimum variance rooting of phylogenetic trees and implications for species tree reconstruction.

    PubMed

    Mai, Uyen; Sayyari, Erfan; Mirarab, Siavash

    2017-01-01

    Phylogenetic trees inferred using commonly-used models of sequence evolution are unrooted, but the root position matters both for interpretation and downstream applications. This issue has been long recognized; however, whether the potential for discordance between the species tree and gene trees impacts methods of rooting a phylogenetic tree has not been extensively studied. In this paper, we introduce a new method of rooting a tree based on its branch length distribution; our method, which minimizes the variance of root to tip distances, is inspired by the traditional midpoint rerooting and is justified when deviations from the strict molecular clock are random. Like midpoint rerooting, the method can be implemented in a linear time algorithm. In extensive simulations that consider discordance between gene trees and the species tree, we show that the new method is more accurate than midpoint rerooting, but its relative accuracy compared to using outgroups to root gene trees depends on the size of the dataset and levels of deviations from the strict clock. We show high levels of error for all methods of rooting estimated gene trees due to factors that include effects of gene tree discordance, deviations from the clock, and gene tree estimation error. Our simulations, however, did not reveal significant differences between two equivalent methods for species tree estimation that use rooted and unrooted input, namely, STAR and NJst. Nevertheless, our results point to limitations of existing scalable rooting methods.

  16. Minimum variance rooting of phylogenetic trees and implications for species tree reconstruction

    PubMed Central

    Sayyari, Erfan; Mirarab, Siavash

    2017-01-01

    Phylogenetic trees inferred using commonly-used models of sequence evolution are unrooted, but the root position matters both for interpretation and downstream applications. This issue has been long recognized; however, whether the potential for discordance between the species tree and gene trees impacts methods of rooting a phylogenetic tree has not been extensively studied. In this paper, we introduce a new method of rooting a tree based on its branch length distribution; our method, which minimizes the variance of root to tip distances, is inspired by the traditional midpoint rerooting and is justified when deviations from the strict molecular clock are random. Like midpoint rerooting, the method can be implemented in a linear time algorithm. In extensive simulations that consider discordance between gene trees and the species tree, we show that the new method is more accurate than midpoint rerooting, but its relative accuracy compared to using outgroups to root gene trees depends on the size of the dataset and levels of deviations from the strict clock. We show high levels of error for all methods of rooting estimated gene trees due to factors that include effects of gene tree discordance, deviations from the clock, and gene tree estimation error. Our simulations, however, did not reveal significant differences between two equivalent methods for species tree estimation that use rooted and unrooted input, namely, STAR and NJst. Nevertheless, our results point to limitations of existing scalable rooting methods. PMID:28800608

  17. Estimating phylogenetic relationships despite discordant gene trees across loci: the species tree of a diverse species group of feather mites (Acari: Proctophyllodidae).

    PubMed

    Knowles, Lacey L; Klimov, Pavel B

    2011-11-01

    With the increased availability of multilocus sequence data, the lack of concordance of gene trees estimated for independent loci has focused attention on both the biological processes producing the discord and the methodologies used to estimate phylogenetic relationships. What has emerged is a suite of new analytical tools for phylogenetic inference--species tree approaches. In contrast to traditional phylogenetic methods that are stymied by the idiosyncrasies of gene trees, approaches for estimating species trees explicitly take into account the cause of discord among loci and, in the process, provides a direct estimate of phylogenetic history (i.e. the history of species divergence, not divergence of specific loci). We illustrate the utility of species tree estimates with an analysis of a diverse group of feather mites, the pinnatus species group (genus Proctophyllodes). Discord among four sequenced nuclear loci is consistent with theoretical expectations, given the short time separating speciation events (as evident by short internodes relative to terminal branch lengths in the trees). Nevertheless, many of the relationships are well resolved in a Bayesian estimate of the species tree; the analysis also highlights ambiguous aspects of the phylogeny that require additional loci. The broad utility of species tree approaches is discussed, and specifically, their application to groups with high speciation rates--a history of diversification with particular prevalence in host/parasite systems where species interactions can drive rapid diversification.

  18. Growth Predictions for Tree Species Planted on Marginal Soybean Lands in the Lower Mississippi Valley

    Treesearch

    J.W. Groninger; W.M. Aust; M. Miwa; John A. Stanturf

    2000-01-01

    The establishment of bottomland hardwood forest stands and riparian buffers on frequently-flooded soybean (Glycine max.) lands in the Lower Mississippi Valley represents a tremendous opporunity to prvide both economic and environmental benefits to the region. Selecting appropriate sites for reestablishing tree cover, accurately predicting the productivity of planted...

  19. Tree diversity and the role of non-host neighbour tree species in reducing fungal pathogen infestation

    PubMed Central

    Hantsch, Lydia; Bien, Steffen; Radatz, Stine; Braun, Uwe; Auge, Harald; Bruelheide, Helge

    2014-01-01

    The degree to which plant pathogen infestation occurs in a host plant is expected to be strongly influenced by the level of species diversity among neighbouring host and non-host plant species. Since pathogen infestation can negatively affect host plant performance, it can mediate the effects of local biodiversity on ecosystem functioning. We tested the effects of tree diversity and the proportion of neighbouring host and non-host species with respect to the foliar fungal pathogens of Tilia cordata and Quercus petraea in the Kreinitz tree diversity experiment in Germany. We hypothesized that fungal pathogen richness increases while infestation decreases with increasing local tree diversity. In addition, we tested whether fungal pathogen richness and infestation are dependent on the proportion of host plant species present or on the proportion of particular non-host neighbouring tree species. Leaves of the two target species were sampled across three consecutive years with visible foliar fungal pathogens on the leaf surface being identified macro- and microscopically. Effects of diversity among neighbouring trees were analysed: (i) for total fungal species richness and fungal infestation on host trees and (ii) for infestation by individual fungal species. We detected four and five fungal species on T. cordata and Q. petraea, respectively. High local tree diversity reduced (i) total fungal species richness and infestation of T. cordata and fungal infestation of Q. petraea and (ii) infestation by three host-specialized fungal pathogen species. These effects were brought about by local tree diversity and were independent of host species proportion. In general, host species proportion had almost no effect on fungal species richness and infestation. Strong effects associated with the proportion of particular non-host neighbouring tree species on fungal species richness and infestation were, however, recorded. Synthesis. For the first time, we experimentally

  20. Tree diversity and the role of non-host neighbour tree species in reducing fungal pathogen infestation.

    PubMed

    Hantsch, Lydia; Bien, Steffen; Radatz, Stine; Braun, Uwe; Auge, Harald; Bruelheide, Helge

    2014-11-01

    The degree to which plant pathogen infestation occurs in a host plant is expected to be strongly influenced by the level of species diversity among neighbouring host and non-host plant species. Since pathogen infestation can negatively affect host plant performance, it can mediate the effects of local biodiversity on ecosystem functioning.We tested the effects of tree diversity and the proportion of neighbouring host and non-host species with respect to the foliar fungal pathogens of Tilia cordata and Quercus petraea in the Kreinitz tree diversity experiment in Germany. We hypothesized that fungal pathogen richness increases while infestation decreases with increasing local tree diversity. In addition, we tested whether fungal pathogen richness and infestation are dependent on the proportion of host plant species present or on the proportion of particular non-host neighbouring tree species.Leaves of the two target species were sampled across three consecutive years with visible foliar fungal pathogens on the leaf surface being identified macro- and microscopically. Effects of diversity among neighbouring trees were analysed: (i) for total fungal species richness and fungal infestation on host trees and (ii) for infestation by individual fungal species.We detected four and five fungal species on T. cordata and Q. petraea , respectively. High local tree diversity reduced (i) total fungal species richness and infestation of T. cordata and fungal infestation of Q. petraea and (ii) infestation by three host-specialized fungal pathogen species. These effects were brought about by local tree diversity and were independent of host species proportion. In general, host species proportion had almost no effect on fungal species richness and infestation. Strong effects associated with the proportion of particular non-host neighbouring tree species on fungal species richness and infestation were, however, recorded. Synthesis . For the first time, we experimentally

  1. Influence of Soils, Riparian Zones, and Hydrology on Nutrients, Herbicides, and Biological Relations in Midwestern Agricultural Streams

    NASA Astrophysics Data System (ADS)

    Porter, S.

    2001-12-01

    Chemical, biological, and habitat conditions were characterized in 70 streams in the upper Mississippi River basin during August 1997, as part of the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program. The study was designed to evaluate algal and macroinvertebrate responses to high agricultural intensity in relation to nonpoint sources of nutrients and herbicides, characteristics of basin soils, wooded-riparian vegetation, and hydrology. Concentrations and forms of nutrients, herbicides and their metabolites, and seston constituents varied significantly with regional differences in soil properties, ground and surface water relations, density of riparian trees, and precedent rainfall-runoff conditions. Dissolved nitrate concentrations were relatively low in streams with high algal productivity; however, nitrate concentrations increased with basin water yield, which was associated with the regional distribution of rainfall during the month prior to the study. Stream productivity and respiration were positively correlated with seston (phytoplankton) chlorophyll concentrations, which were significantly larger in streams in areas with poorly drained soils and low riparian-tree density. Concentrations of dissolved phosphorus were low in streams where periphyton biomass was high. Periphyton biomass was relatively larger in streams with clear water and low abundance of macroinvertebrates that consume algae. Periphyton biomass decreased rapidly with modest increases in the abundance of scrapers such as snails and certain mayfly taxa. Differences in dissolved oxygen, organic carbon, stream velocity, and precedent hydrologic conditions explained much of the variance in macroinvertebrate community structure. The overall number of macroinvertebrate species and number of mayfly, caddisfly, and stonefly (EPT) taxa that are sensitive to organic enrichment were largest in streams with moderate periphyton biomass, in areas with moderately-well drained soils

  2. Beyond cool: adapting upland streams for climate change using riparian woodlands.

    PubMed

    Thomas, Stephen M; Griffiths, Siân W; Ormerod, Steve J

    2016-01-01

    Managed adaptation could reduce the risks of climate change to the world's ecosystems, but there have been surprisingly few practical evaluations of the options available. For example, riparian woodland is advocated widely as shade to reduce warming in temperate streams, but few studies have considered collateral effects on species composition or ecosystem functions. Here, we use cross-sectional analyses at two scales (region and within streams) to investigate whether four types of riparian management, including those proposed to reduce potential climate change impacts, might also affect the composition, functional character, dynamics and energetic resourcing of macroinvertebrates in upland Welsh streams (UK). Riparian land use across the region had only small effects on invertebrate taxonomic composition, while stable isotope data showed how energetic resources assimilated by macroinvertebrates in all functional guilds were split roughly 50:50 between terrestrial and aquatic origins irrespective of riparian management. Nevertheless, streams draining the most extensive deciduous woodland had the greatest stocks of coarse particulate matter (CPOM) and greater numbers of 'shredding' detritivores. Stream-scale investigations showed that macroinvertebrate biomass in deciduous woodland streams was around twice that in moorland streams, and lowest of all in streams draining non-native conifers. The unexpected absence of contrasting terrestrial signals in the isotopic data implies that factors other than local land use affect the relative incorporation of allochthonous subsidies into riverine food webs. Nevertheless, our results reveal how planting deciduous riparian trees along temperate headwaters as an adaptation to climate change can modify macroinvertebrate function, increase biomass and potentially enhance resilience by increasing basal resources where cover is extensive (>60 m riparian width). We advocate greater urgency in efforts to understand the ecosystem

  3. Species collapse via hybridization in Darwin's tree finches.

    PubMed

    Kleindorfer, Sonia; O'Connor, Jody A; Dudaniec, Rachael Y; Myers, Steven A; Robertson, Jeremy; Sulloway, Frank J

    2014-03-01

    Species hybridization can lead to fitness costs, species collapse, and novel evolutionary trajectories in changing environments. Hybridization is predicted to be more common when environmental conditions change rapidly. Here, we test patterns of hybridization in three sympatric tree finch species (small tree finch Camarhynchus parvulus, medium tree finch Camarhynchus pauper, and large tree finch: Camarhynchus psittacula) that are currently recognized on Floreana Island, Galápagos Archipelago. Genetic analysis of microsatellite data from contemporary samples showed two genetic populations and one hybrid cluster in both 2005 and 2010; hybrid individuals were derived from genetic population 1 (small morph) and genetic population 2 (large morph). Females of the large and rare species were more likely to pair with males of the small common species. Finch populations differed in morphology in 1852-1906 compared with 2005/2010. An unsupervised clustering method showed (a) support for three morphological clusters in the historical tree finch sample (1852-1906), which is consistent with current species recognition; (b) support for two or three morphological clusters in 2005 with some (19%) hybridization; and (c) support for just two morphological clusters in 2010 with frequent (41%) hybridization. We discuss these findings in relation to species demarcations of Camarhynchus tree finches on Floreana Island.

  4. Species tree inference by minimizing deep coalescences.

    PubMed

    Than, Cuong; Nakhleh, Luay

    2009-09-01

    In a 1997 seminal paper, W. Maddison proposed minimizing deep coalescences, or MDC, as an optimization criterion for inferring the species tree from a set of incongruent gene trees, assuming the incongruence is exclusively due to lineage sorting. In a subsequent paper, Maddison and Knowles provided and implemented a search heuristic for optimizing the MDC criterion, given a set of gene trees. However, the heuristic is not guaranteed to compute optimal solutions, and its hill-climbing search makes it slow in practice. In this paper, we provide two exact solutions to the problem of inferring the species tree from a set of gene trees under the MDC criterion. In other words, our solutions are guaranteed to find the tree that minimizes the total number of deep coalescences from a set of gene trees. One solution is based on a novel integer linear programming (ILP) formulation, and another is based on a simple dynamic programming (DP) approach. Powerful ILP solvers, such as CPLEX, make the first solution appealing, particularly for very large-scale instances of the problem, whereas the DP-based solution eliminates dependence on proprietary tools, and its simplicity makes it easy to integrate with other genomic events that may cause gene tree incongruence. Using the exact solutions, we analyze a data set of 106 loci from eight yeast species, a data set of 268 loci from eight Apicomplexan species, and several simulated data sets. We show that the MDC criterion provides very accurate estimates of the species tree topologies, and that our solutions are very fast, thus allowing for the accurate analysis of genome-scale data sets. Further, the efficiency of the solutions allow for quick exploration of sub-optimal solutions, which is important for a parsimony-based criterion such as MDC, as we show. We show that searching for the species tree in the compatibility graph of the clusters induced by the gene trees may be sufficient in practice, a finding that helps ameliorate the

  5. Genetic and environmental influences on leaf phenology and cold hardiness of native and introduced riparian trees

    USGS Publications Warehouse

    Friedman, J.M.; Roelle, J.E.; Cade, B.S.

    2011-01-01

    To explore the roles of plasticity and genetic variation in the response to spatial and temporal climate variation, we established a common garden consisting of paired collections of native and introduced riparian trees sampled along a latitudinal gradient. The garden in Fort Collins, Colorado (latitude 40.6??N), included 681 native plains cottonwood (Populus deltoides subsp. monilifera) and introduced saltcedar (Tamarix ramosissima, T. chinensis and hybrids) collected from 15 sites at 29.2-47.6??N in the central United States. In the common garden both species showed latitudinal variation in fall, but not spring, leaf phenology, suggesting that the latitudinal gradient in fall phenology observed in the field results at least in part from inherited variation in the critical photoperiod, while the latitudinal gradient in spring phenology observed in the field is largely a plastic response to the temperature gradient. Populations from higher latitudes exhibited earlier bud set and leaf senescence. Cold hardiness varied latitudinally in both fall and spring for both species. For cottonwood, cold hardiness began earlier and ended later in northern than in southern populations. For saltcedar northern populations were hardier throughout the cold season than southern populations. Although cottonwood was hardier than saltcedar in midwinter, the reverse was true in late fall and early spring. The latitudinal variation in fall phenology and cold hardiness of saltcedar appears to have developed as a result of multiple introductions of genetically distinct populations, hybridization and natural selection in the 150 years since introduction. ?? 2011 US Government.

  6. VEGETATION CHARACTERIZATION OF THREE CONTRASTING RIPARIAN SITES, WILLAMETTE VALLEY, OR

    EPA Science Inventory

    Much of the native riparian vegetation of the Willamette Valley, Oregon, has been replaced with agricultural crops or invasive non-native plant species. Detailed information about current Willamette Valley riparian vegetation is generally lacking. Plant species composition data...

  7. Drought responses by individual tree species are not often correlated with tree species diversity in European forests

    DOE PAGES

    Forrester, David I.; Bonal, Damien; Dawud, Seid; ...

    2016-07-26

    Drought frequency and intensity are predicted to increase in many parts of the Northern Hemisphere and the effects of such changes on forest growth and tree mortality are already evident in many regions around the world. Mixed-species forests and increasing tree species diversity have been put forward as important risk reduction and adaptation strategies in the face of climate change. But, little is known about whether the species interactions that occur in diverse forests will reduce drought susceptibility or water stress. In this study, we focused on the effect of drought on individual tree species (n = 16) within sixmore » regions of Europe and assessed whether this response was related to tree species diversity and stand density, and whether community-level responses resulted from many similar or contrasting species-level responses. For each species in each plot, we calculated the increase in carbon isotope composition of latewood from a wet to a dry year (Δδ13C) as an estimate of its drought stress level. Furthermore, when significant community-level relationships occurred (three of six regions), there was only one species within the given community that showed a significant relationship (three of 25 species–region combinations), showing that information about a single species can be a poor indicator of the response of other species or the whole community. There were many two-species mixtures in which both species were less water-stressed compared with their monocultures, but also many mixtures where both species were more stressed compared with their monocultures. Furthermore, a given species combination responded differently in different regions. Synthesis and applications. Our study shows that drought stress may sometimes be reduced in mixed-species forests, but this is not a general pattern, and even varies between sites for a given combination. The management or prediction of drought stress requires consideration of the physiological characteristics

  8. Drought responses by individual tree species are not often correlated with tree species diversity in European forests

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Forrester, David I.; Bonal, Damien; Dawud, Seid

    Drought frequency and intensity are predicted to increase in many parts of the Northern Hemisphere and the effects of such changes on forest growth and tree mortality are already evident in many regions around the world. Mixed-species forests and increasing tree species diversity have been put forward as important risk reduction and adaptation strategies in the face of climate change. But, little is known about whether the species interactions that occur in diverse forests will reduce drought susceptibility or water stress. In this study, we focused on the effect of drought on individual tree species (n = 16) within sixmore » regions of Europe and assessed whether this response was related to tree species diversity and stand density, and whether community-level responses resulted from many similar or contrasting species-level responses. For each species in each plot, we calculated the increase in carbon isotope composition of latewood from a wet to a dry year (Δδ13C) as an estimate of its drought stress level. Furthermore, when significant community-level relationships occurred (three of six regions), there was only one species within the given community that showed a significant relationship (three of 25 species–region combinations), showing that information about a single species can be a poor indicator of the response of other species or the whole community. There were many two-species mixtures in which both species were less water-stressed compared with their monocultures, but also many mixtures where both species were more stressed compared with their monocultures. Furthermore, a given species combination responded differently in different regions. Synthesis and applications. Our study shows that drought stress may sometimes be reduced in mixed-species forests, but this is not a general pattern, and even varies between sites for a given combination. The management or prediction of drought stress requires consideration of the physiological characteristics

  9. Transverse and longitudinal variation in woody riparian vegetation along a montane river

    USGS Publications Warehouse

    Friedman, J.M.; Auble, G.T.; Andrews, E.D.; Kittel, G.; Madole, R.F.; Griffin, E.R.; Allred, Tyler M.

    2006-01-01

    This study explores how the relationship between flow and riparian vegetation varies along a montane river. We mapped occurrence of woody riparian plant communities along 58 km of the San Miguel River in southwestern Colorado. We determined the recurrence interval of inundation for each plant community by combining step-backwater hydraulic modeling at 4 representative reaches with Log-Pearson analysis of 4 stream gaging stations. Finally, we mapped bottomland surficial geology and used a Geographic Information System to overlay the coverages of geology and vegetation. Plant communities were distinctly arrayed along the hydrologic gradient. The Salix exigua Nuttall (sand-bar willow) community occurred mostly on surfaces with a recurrence interval of inundation shorter than 2.2 years; the Betula occidentalis Hooker (river birch) community peaked on sites with recurrence intervals of inundation between 2.2 and 4.6 years. The hydrologic position occupied by communities dominated by Populus angustifolia James (narrowleaf cottonwood) was strongly related to age of trees and species composition of understory shrubs. The fraction of riparian vegetation on surfaces historically inundated by the river decreased in the upstream direction from almost 100% near Uravan to <50% along the South Fork of the San Miguel River. In upstream reaches much of the physical disturbance necessary to maintain riparian vegetation is provided by valley-side processes including debris flows, floods from minor tributaries, landslides, and beaver activity. Where valley-side processes are important, prediction of riparian vegetation change based on alterations of river flow will be incomplete.

  10. Tree Species Richness Promotes Invertebrate Herbivory on Congeneric Native and Exotic Tree Saplings in a Young Diversity Experiment.

    PubMed

    Wein, Annika; Bauhus, Jürgen; Bilodeau-Gauthier, Simon; Scherer-Lorenzen, Michael; Nock, Charles; Staab, Michael

    2016-01-01

    Tree diversity in forests is an important driver of ecological processes including herbivory. Empirical evidence suggests both negative and positive effects of tree diversity on herbivory, which can be, respectively, attributed to associational resistance or associational susceptibility. Tree diversity experiments allow testing for associational effects, but evidence regarding which pattern predominates is mixed. Furthermore, it is unknown if herbivory on tree species of native vs. exotic origin is influenced by changing tree diversity in a similar way, or if exotic tree species escape natural enemies, resulting in lower damage that is unrelated to tree diversity. To address these questions, we established a young tree diversity experiment in temperate southwestern Germany that uses high planting density (49 trees per plot; plot size 13 m2). The species pool consists of six congeneric species pairs of European and North American origin (12 species in total) planted in monocultures and mixtures (1, 2, 4, 6 species). We assessed leaf damage by leaf-chewing insects on more than 5,000 saplings of six broadleaved tree species. Plot-level tree species richness increased leaf damage, which more than doubled from monocultures to six-species mixtures, strongly supporting associational susceptibility. However, leaf damage among congeneric native and exotic species pairs was similar. There were marked differences in patterns of leaf damage across tree genera, and only the genera likely having a predominately generalist herbivore community showed associational susceptibility, irrespective of the geographical origin of a tree species. In conclusion, an increase in tree species richness in young temperate forests may result in associational susceptibility to feeding by generalist herbivores.

  11. The Riparianness of a Desert Herpetofauna

    Treesearch

    Charles H. Lowe

    1989-01-01

    Within the Mojave, Sonoran, and Chihuahuan Desert subdivisions of the North American Desert in the U.S., more than half of 143 total amphibian and reptilian species perform as riparian and/or wetland taxa. For the reptiles, but not the amphibians, there is a significant inverse relationship between riparianness (obligate through preferential and facultative to...

  12. Hydrology, ecology, and management of riparian areas in the Madrean Archipelago [Abstract

    Treesearch

    Daniel G. Neary; Peter F. Ffolliott; Leonard F. DeBano

    2005-01-01

    Riparian corridors in the Madrean Archipelago have historically provided water necessary for people, livestock, and agricultural crops. Anglo settlers during the 1800s were attracted to riparian areas in this arid and semi-arid region where they enjoyed the forage and shade for themselves and their livestock and existed on the readily available wildlife and fish. Trees...

  13. Landowner interest in multifunctional agroforestry riparian buffers.

    Treesearch

    Katie Trozzo; John Munsell; James Chamberlain

    2014-01-01

    Adoption of temperate agroforestry practices generally remains limited despite considerable advances in basic science. This study builds on temperate agroforestry adoption research by empirically testing a statistical model of interest in native fruit and nut tree riparian buffers using technology and agroforestry adoption theory. Data...

  14. DLRS: gene tree evolution in light of a species tree.

    PubMed

    Sjöstrand, Joel; Sennblad, Bengt; Arvestad, Lars; Lagergren, Jens

    2012-11-15

    PrIME-DLRS (or colloquially: 'Delirious') is a phylogenetic software tool to simultaneously infer and reconcile a gene tree given a species tree. It accounts for duplication and loss events, a relaxed molecular clock and is intended for the study of homologous gene families, for example in a comparative genomics setting involving multiple species. PrIME-DLRS uses a Bayesian MCMC framework, where the input is a known species tree with divergence times and a multiple sequence alignment, and the output is a posterior distribution over gene trees and model parameters. PrIME-DLRS is available for Java SE 6+ under the New BSD License, and JAR files and source code can be downloaded from http://code.google.com/p/jprime/. There is also a slightly older C++ version available as a binary package for Ubuntu, with download instructions at http://prime.sbc.su.se. The C++ source code is available upon request. joel.sjostrand@scilifelab.se or jens.lagergren@scilifelab.se. PrIME-DLRS is based on a sound probabilistic model (Åkerborg et al., 2009) and has been thoroughly validated on synthetic and biological datasets (Supplementary Material online).

  15. Riparian Protection Rules for Oregon Forests

    Treesearch

    George G. Ice; Robert L. Beschta; Raymond S. Craig; James R. Sedell

    1989-01-01

    Forest Practice Rules under the Oregon Forest Practices Act were modified in 1987 to increase protection of riparian areas adjacent to timber harvest operations. These modifications addressed concerns about water quality protection and retaining trees as sources of large woody debris for future stream channel structure. The rule changes triggered debate about the...

  16. iGLASS: An Improvement to the GLASS Method for Estimating Species Trees from Gene Trees

    PubMed Central

    Rosenberg, Noah A.

    2012-01-01

    Abstract Several methods have been designed to infer species trees from gene trees while taking into account gene tree/species tree discordance. Although some of these methods provide consistent species tree topology estimates under a standard model, most either do not estimate branch lengths or are computationally slow. An exception, the GLASS method of Mossel and Roch, is consistent for the species tree topology, estimates branch lengths, and is computationally fast. However, GLASS systematically overestimates divergence times, leading to biased estimates of species tree branch lengths. By assuming a multispecies coalescent model in which multiple lineages are sampled from each of two taxa at L independent loci, we derive the distribution of the waiting time until the first interspecific coalescence occurs between the two taxa, considering all loci and measuring from the divergence time. We then use the mean of this distribution to derive a correction to the GLASS estimator of pairwise divergence times. We show that our improved estimator, which we call iGLASS, consistently estimates the divergence time between a pair of taxa as the number of loci approaches infinity, and that it is an unbiased estimator of divergence times when one lineage is sampled per taxon. We also show that many commonly used clustering methods can be combined with the iGLASS estimator of pairwise divergence times to produce a consistent estimator of the species tree topology. Through simulations, we show that iGLASS can greatly reduce the bias and mean squared error in obtaining estimates of divergence times in a species tree. PMID:22216756

  17. Hurricane disturbance and tropical tree species diversity.

    PubMed

    Vandermeer, J; Granzow de la Cerda, I; Boucher, D; Perfecto, I; Ruiz, J

    2000-10-27

    The debate over the maintenance of high diversity of tree species in tropical forests centers on the role of tree-fall gaps as a primary source of disturbance. Using a 10-year data series accumulated since Hurricane Joan struck the Caribbean coast of Nicaragua in 1988, we examined the pattern of species accumulation over time and with increased sampling of individuals. Our analysis shows that the pattern after a hurricane differs from the pattern after a simple tree-fall disturbance, and we conclude that pioneers are limited in large disturbances and thus do not suppress other species the way they do in smaller disturbances.

  18. Early physiological flood tolerance is followed by slow post-flooding root recovery in the dryland riparian tree Eucalyptus camaldulensis subsp. refulgens.

    PubMed

    Argus, R E; Colmer, T D; Grierson, P F

    2015-06-01

    We investigated physiological and morphological responses to flooding and recovery in Eucalyptus camaldulensis subsp. refulgens, a riparian tree species from a dryland region prone to intense episodic floods. Seedlings in soil flooded for 88 d produced extensive adventitious roots, displayed stem hypertrophy (stem diameter increased by 93%) and increased root porosity owing to aerenchyma formation. Net photosynthesis (Pn) and stomatal conductance (gs) were maintained for at least 2 weeks of soil flooding, contrasting with previous studies of other subspecies of E. camaldulensis. Gradual declines followed in both gs (30% less than controls) and Pn (19% less). Total leaf soluble sugars did not differ between flooded and control plants. Root mass did not recover 32 d after flooding ceased, but gs was not lower than controls, suggesting the root system was able to functionally compensate. However, the limited root growth during recovery after flooding was surprising given the importance of extensive root systems in dryland environments. We conclude that early flood tolerance could be an adaptation to capitalize on scarce water resources in a water-limited environment. Overall, our findings highlight the need to assess flooding responses in relation to a species' fitness for particular flood regimes or ecological niches. © 2014 John Wiley & Sons Ltd.

  19. An estimate of the number of tropical tree species

    Treesearch

    J. W. Ferry Slik; Victor Arroyo-Rodriguez; Shin-Ichiro and others Aiba

    2015-01-01

    The high species richness of tropical forests has long been recognized, yet there remains substantial uncertainty regarding the actual number of tropical tree species. Using a pantropical tree inventory database from closed canopy forests, consisting of 657,630 trees belonging to 11,371 species, we use a fitted value of Fishers alpha and an approximate pantropical stem...

  20. Riparian bird density decline in response to biocontrol of Tamarix from riparian ecosystems along the Dolores River in SW Colorado, USA

    USGS Publications Warehouse

    Darrah, Abigail J.; van Riper, Charles

    2018-01-01

    Biocontrol of invasive tamarisk (Tamarix spp.) in the arid Southwest using the introduced tamarisk beetle (Diorhabda elongata) has been hypothesized to negatively affect some breeding bird species, but no studies to date have documented the effects of beetle-induced defoliation on riparian bird abundance. We assessed the effects of tamarisk defoliation by monitoring defoliation rates, changes in vegetation composition, and changes in density of six obligate riparian breeding bird species at two sites along the Dolores River in Colorado following the arrival of tamarisk beetles. We conducted bird point counts from 2010 to 2014 and modeled bird density as a function of native vegetation density and extent of defoliation using hierarchical distance sampling. Maximum annual defoliation decreased throughout the study period, peaking at 32–37% in 2009–2010 and dropping to 0.5–15% from 2011–2014. Stem density of both tamarisk and native plants declined throughout the study period until 2014. Density of all bird species declined throughout most of the study, with Song Sparrow disappearing from the study sites after 2011. Blue Grosbeak, Yellow-breasted Chat, and Yellow Warbler densities were negatively related to defoliation in the previous year, while Lazuli Bunting exhibited a positive relationship with defoliation. These findings corroborate earlier predictions of species expected to be sensitive to defoliation as a result of nest site selection. Tamarisk defoliation thus had short-term negative impacts on riparian bird species; active restoration may be needed to encourage the regrowth of native riparian vegetation, which in the longer-term may result in increased riparian bird density.

  1. Perceptions of environmental change and use of traditional knowledge to plan riparian forest restoration with relocated communities in Alcântara, Eastern Amazon.

    PubMed

    Celentano, Danielle; Rousseau, Guillaume Xavier; Engel, Vera Lex; Façanha, Cristiane Lima; Oliveira, Elivaldo Moreira de; Moura, Emanoel Gomes de

    2014-01-27

    Riparian forests provide ecosystem services that are essential for human well-being. The Pepital River is the main water supply for Alcântara (Brazil) and its forests are disappearing. This is affecting water volume and distribution in the region. Promoting forest restoration is imperative. In deprived regions, restoration success depends on the integration of ecology, livelihoods and traditional knowledge (TEK). In this study, an interdisciplinary research framework is proposed to design riparian forest restoration strategies based on ecological data, TEK and social needs. This study takes place in a region presenting a complex history of human relocation and land tenure. Local populations from seven villages were surveyed to document livelihood (including 'free-listing' of agricultural crops and homegarden tree species). Additionally, their perceptions toward environmental changes were explored through semi-structured interviews (n = 79). Ethnobotanical information on forest species and their uses were assessed by local-specialists (n = 19). Remnants of conserved forests were surveyed to access ecological information on tree species (three plots of 1,000 m2). Results included descriptive statistics, frequency and Smith’s index of salience of the free-list results. The local population depends primarily on slash-and-burn subsistence agriculture to meet their needs. Interviewees showed a strong empirical knowledge about the environmental problems of the river, and of their causes, consequences and potential solutions. Twenty-four tree species (dbh > 10 cm) were found at the reference sites. Tree density averaged 510 individuals per hectare (stdv = 91.6); and 12 species were considered the most abundant (density > 10ind/ha). There was a strong consensus among plant-specialists about the most important trees. The species lists from reference sites and plant-specialists presented an important convergence. Slash-and-burn agriculture is the main source of livelihood

  2. Perceptions of environmental change and use of traditional knowledge to plan riparian forest restoration with relocated communities in Alcântara, Eastern Amazon

    PubMed Central

    2014-01-01

    Background Riparian forests provide ecosystem services that are essential for human well-being. The Pepital River is the main water supply for Alcântara (Brazil) and its forests are disappearing. This is affecting water volume and distribution in the region. Promoting forest restoration is imperative. In deprived regions, restoration success depends on the integration of ecology, livelihoods and traditional knowledge (TEK). In this study, an interdisciplinary research framework is proposed to design riparian forest restoration strategies based on ecological data, TEK and social needs. Methods This study takes place in a region presenting a complex history of human relocation and land tenure. Local populations from seven villages were surveyed to document livelihood (including ‘free-listing’ of agricultural crops and homegarden tree species). Additionally, their perceptions toward environmental changes were explored through semi-structured interviews (n = 79). Ethnobotanical information on forest species and their uses were assessed by local-specialists (n = 19). Remnants of conserved forests were surveyed to access ecological information on tree species (three plots of 1,000 m2). Results included descriptive statistics, frequency and Smith’s index of salience of the free-list results. Results The local population depends primarily on slash-and-burn subsistence agriculture to meet their needs. Interviewees showed a strong empirical knowledge about the environmental problems of the river, and of their causes, consequences and potential solutions. Twenty-four tree species (dbh > 10 cm) were found at the reference sites. Tree density averaged 510 individuals per hectare (stdv = 91.6); and 12 species were considered the most abundant (density > 10ind/ha). There was a strong consensus among plant-specialists about the most important trees. The species lists from reference sites and plant-specialists presented an important convergence

  3. Species replacement by a nonnative salmonid alters ecosystem function by reducing prey subsidies that support riparian spiders

    USGS Publications Warehouse

    Benjamin, J.R.; Fausch, K.D.; Baxter, C.V.

    2011-01-01

    Replacement of a native species by a nonnative can have strong effects on ecosystem function, such as altering nutrient cycling or disturbance frequency. Replacements may cause shifts in ecosystem function because nonnatives establish at different biomass, or because they differ from native species in traits like foraging behavior. However, no studies have compared effects of wholesale replacement of a native by a nonnative species on subsidies that support consumers in adjacent habitats, nor quantified the magnitude of these effects. We examined whether streams invaded by nonnative brook trout (Salvelinus fontinalis) in two regions of the Rocky Mountains, USA, produced fewer emerging adult aquatic insects compared to paired streams with native cutthroat trout (Oncorhynchus clarkii), and whether riparian spiders that depend on these prey were less abundant along streams with lower total insect emergence. As predicted, emergence density was 36% lower from streams with the nonnative fish. Biomass of brook trout was higher than the cutthroat trout they replaced, but even after accounting for this difference, emergence was 24% lower from brook trout streams. More riparian spiders were counted along streams with greater total emergence across the water surface. Based on these results, we predicted that brook trout replacement would result in 6-20% fewer spiders in the two regions. When brook trout replace cutthroat trout, they reduce cross-habitat resource subsidies and alter ecosystem function in stream-riparian food webs, not only owing to increased biomass but also because traits apparently differ from native cutthroat trout. ?? 2011 Springer-Verlag.

  4. A Bayesian Supertree Model for Genome-Wide Species Tree Reconstruction

    PubMed Central

    De Oliveira Martins, Leonardo; Mallo, Diego; Posada, David

    2016-01-01

    Current phylogenomic data sets highlight the need for species tree methods able to deal with several sources of gene tree/species tree incongruence. At the same time, we need to make most use of all available data. Most species tree methods deal with single processes of phylogenetic discordance, namely, gene duplication and loss, incomplete lineage sorting (ILS) or horizontal gene transfer. In this manuscript, we address the problem of species tree inference from multilocus, genome-wide data sets regardless of the presence of gene duplication and loss and ILS therefore without the need to identify orthologs or to use a single individual per species. We do this by extending the idea of Maximum Likelihood (ML) supertrees to a hierarchical Bayesian model where several sources of gene tree/species tree disagreement can be accounted for in a modular manner. We implemented this model in a computer program called guenomu whose inputs are posterior distributions of unrooted gene tree topologies for multiple gene families, and whose output is the posterior distribution of rooted species tree topologies. We conducted extensive simulations to evaluate the performance of our approach in comparison with other species tree approaches able to deal with more than one leaf from the same species. Our method ranked best under simulated data sets, in spite of ignoring branch lengths, and performed well on empirical data, as well as being fast enough to analyze relatively large data sets. Our Bayesian supertree method was also very successful in obtaining better estimates of gene trees, by reducing the uncertainty in their distributions. In addition, our results show that under complex simulation scenarios, gene tree parsimony is also a competitive approach once we consider its speed, in contrast to more sophisticated models. PMID:25281847

  5. EnviroAtlas - Paterson, NJ - 51m Riparian Buffer Forest Cover

    EPA Pesticide Factsheets

    This EnviroAtlas dataset describes the percentage of a 51-m riparian buffer that is forested. There is a potential for decreased water quality in areas where the riparian buffer is less forested. The displayed line represents the center of the analyzed riparian buffer. The water bodies analyzed include hydrologically connected streams, rivers, connectors, reservoirs, lakes/ponds, ice masses, washes, locks, and rapids within the Atlas Area. EnviroAtlas defines tree buffer for this community as only trees and forest. This dataset was produced by the US EPA to support research and online mapping activities related to EnviroAtlas. EnviroAtlas (https://www.epa.gov/enviroatlas) allows the user to interact with a web-based, easy-to-use, mapping application to view and analyze multiple ecosystem services for the contiguous United States. The dataset is available as downloadable data (https://edg.epa.gov/data/Public/ORD/EnviroAtlas) or as an EnviroAtlas map service. Additional descriptive information about each attribute in this dataset can be found in its associated EnviroAtlas Fact Sheet (https://www.epa.gov/enviroatlas/enviroatlas-fact-sheets).

  6. Postfire logging in riparian areas.

    PubMed

    Reeves, Gordon H; Bisson, Peter A; Rieman, Bruce E; Benda, Lee E

    2006-08-01

    We reviewed the behavior of wildfire in riparian zones, primarily in the western United States, and the potential ecological consequences of postfire logging. Fire behavior in riparian zones is complex, but many aquatic and riparian organisms exhibit a suite of adaptations that allow relatively rapid recovery after fire. Unless constrained by other factors, fish tend to rebound relatively quickly, usually within a decade after a wildfire. Additionally, fire and subsequent erosion events contribute wood and coarse sediment that can create and maintain productive aquatic habitats over time. The potential effects of postfire logging in riparian areas depend on the landscape context and disturbance history of a site; however available evidence suggests two key management implications: (1) fire in riparian areas creates conditions that may not require intervention to sustain the long-term productivity of the aquatic network and (2) protection of burned riparian areas gives priority to what is left rather than what is removed. Research is needed to determine how postfire logging in riparian areas has affected the spread of invasive species and the vulnerability of upland forests to insect and disease outbreaks and how postfire logging will affect the frequency and behavior of future fires. The effectiveness of using postfire logging to restore desired riparian structure and function is therefore unproven, but such projects are gaining interest with the departure of forest conditions from those that existed prior to timber harvest, fire suppression, and climate change. In the absence of reliable information about the potential consequence of postfire timber harvest, we conclude that providing postfire riparian zones with the same environmental protections they received before they burned isjustified ecologically Without a commitment to monitor management experiments, the effects of postfire riparian logging will remain unknown and highly contentious.

  7. Soil nutrients influence spatial distributions of tropical trees species

    USGS Publications Warehouse

    John, R.; Dalling, J.W.; Harms, K.E.; Yavitt, J.B.; Stallard, R.F.; Mirabello, M.; Hubbell, S.P.; Valencia, R.; Navarrete, H.; Vallejo, M.; Foster, R.B.

    2007-01-01

    The importance of niche vs. neutral assembly mechanisms in structuring tropical tree communities remains an important unsettled question in community ecology [Bell G (2005) Ecology 86:1757-1770]. There is ample evidence that species distributions are determined by soils and habitat factors at landscape (0.5 million individual trees of 1,400 species and 10 essential plant nutrients, we used Monte Carlo simulations of species distributions to test plant-soil associations against null expectations based on dispersal assembly. We found that the spatial distributions of 36-51% of tree species at these sites show strong associations to soil nutrient distributions. Neutral dispersal assembly cannot account for these plant-soil associations or the observed niche breadths of these species. These results indicate that belowground resource availability plays an important role in the assembly of tropical tree communities at local scales and provide the basis for future investigations on the mechanisms of resource competition among tropical tree species. ?? 2007 by The National Academy of Sciences of the USA.

  8. Naturalized Exotic Tree Species in Puerto Rico

    Treesearch

    John K. Francis; Henri A. Liogier

    1991-01-01

    Many exotic tree species have been imported into Puerto Rico for their wood, fruit, and use as coffee shade and ornamentals. Some of these trees have naturalized (reproduced without human intervention) and some have escaped into natural forests. At least 118 exotic species are reproducing in Puerto Rico. Estimates are given for the general rate of spread and future...

  9. Amphibian and reptile abundance in riparian and upslope areas of five forest types in western Oregon

    USGS Publications Warehouse

    Gomez, D.M.; Anthony, R.G.

    1996-01-01

    We compared species composition and relative abundance of herpetofauna between riparian and upslope habitats among 5 forest types (shrub, open sapling-pole, large sawtimber and old-growth conifer forests, and deciduous forests) in Western Oregon. Riparian- and upslope- associated species were identified based on capture frequencies from pitfall trapping. Species richness was similar among forest types but slightly greater in the shrub stands. The abundances of 3 species differed among forest types. Total captures was highest in deciduous forests, intermediate in the mature conifer forests, and lowest in the 2 young coniferous forests. Species richness was similar between stream and upslope habitats; however, captures were higher in riparian than upslope habitat. Tailed frogs (Ascaphus truei), Dunn's salamanders (Plethodon dunni), roughskin newts(Tanicha granulosa), Pacific giant salamanders (Dicamptodon tenebrosus) and red-legged frogs(Rana aurora) were captured more frequently in riparian than upslope habitats. Of these species the red-legged frog and Pacific giant salamander may depend on riparian habitat for at least part of their life requirements, while tailed frogs, Dunn's salamanders and roughskin newts appear to be riparian associated species. In addition, we found Oregon salamanders (Ensatina eschscholtzi) were associated with upslope habitats. We suggest riparian management zones should be al least 75-100 m on each side of the stream and that management for upslope/and or old forest associates may be equally as important as for riparian species.

  10. Potential effects of forestry operations and associated best management practices on riparian wildlife species in the southeastern United States

    Treesearch

    Brooke M. Warrington; W. Michael Aust; Scott M. Barrett; W. Mark Ford; M. Chad Bolding; Andy Dolloff

    2016-01-01

    The US Fish and Wildlife Service is considering the addition of 374 riparian and aquatic species in the southeastern United States to the federal Threated and Endangered Species List. This recommendation is a result of a 2011 petition, which recognized forest operations as having negative effects on 51 percent of the listed species, citing research conducted in the...

  11. A tree-ring based fire history of riparian reserves in the Klamath Mountains.

    Treesearch

    Carl N. Skinner

    2003-01-01

    Surprisingly little fire history information is available for riparian environments despite their ecological importance. Thus, there is a great deal of uncertainty about the ecological role of fire in riparian environments. Considering the Mediterranean climate and the general pattern of frequent low-moderate severity fires in most vegetation types, it is logical to...

  12. STRIDE: Species Tree Root Inference from Gene Duplication Events.

    PubMed

    Emms, David M; Kelly, Steven

    2017-12-01

    The correct interpretation of any phylogenetic tree is dependent on that tree being correctly rooted. We present STRIDE, a fast, effective, and outgroup-free method for identification of gene duplication events and species tree root inference in large-scale molecular phylogenetic analyses. STRIDE identifies sets of well-supported in-group gene duplication events from a set of unrooted gene trees, and analyses these events to infer a probability distribution over an unrooted species tree for the location of its root. We show that STRIDE correctly identifies the root of the species tree in multiple large-scale molecular phylogenetic data sets spanning a wide range of timescales and taxonomic groups. We demonstrate that the novel probability model implemented in STRIDE can accurately represent the ambiguity in species tree root assignment for data sets where information is limited. Furthermore, application of STRIDE to outgroup-free inference of the origin of the eukaryotic tree resulted in a root probability distribution that provides additional support for leading hypotheses for the origin of the eukaryotes. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

  13. Section-Based Tree Species Identification Using Airborne LIDAR Point Cloud

    NASA Astrophysics Data System (ADS)

    Yao, C.; Zhang, X.; Liu, H.

    2017-09-01

    The application of LiDAR data in forestry initially focused on mapping forest community, particularly and primarily intended for largescale forest management and planning. Then with the smaller footprint and higher sampling density LiDAR data available, detecting individual tree overstory, estimating crowns parameters and identifying tree species are demonstrated practicable. This paper proposes a section-based protocol of tree species identification taking palm tree as an example. Section-based method is to detect objects through certain profile among different direction, basically along X-axis or Y-axis. And this method improve the utilization of spatial information to generate accurate results. Firstly, separate the tree points from manmade-object points by decision-tree-based rules, and create Crown Height Mode (CHM) by subtracting the Digital Terrain Model (DTM) from the digital surface model (DSM). Then calculate and extract key points to locate individual trees, thus estimate specific tree parameters related to species information, such as crown height, crown radius, and cross point etc. Finally, with parameters we are able to identify certain tree species. Comparing to species information measured on ground, the portion correctly identified trees on all plots could reach up to 90.65 %. The identification result in this research demonstrate the ability to distinguish palm tree using LiDAR point cloud. Furthermore, with more prior knowledge, section-based method enable the process to classify trees into different classes.

  14. Field-based evaluations of sampling techniques to support long-term monitoring of riparian ecosystems along wadeable streams on the Colorado Plateau

    USGS Publications Warehouse

    Scott, Michael L.; Reynolds, Elizabeth W.

    2007-01-01

    Compared to 5-m by 20-m tree quadrats, belt transects were shown to provide similar estimates of stand structure (stem density and stand basal area) in less than 30 percent of the time. Further, for the streams sampled, there were no statistically significant differences in stem density and basal area estimates between 10-m and 20-m belt transects and the smaller belts took approximately half the time to sample. There was, however, high variance associated with estimates of stand structure for infrequently occurring stems, such as large, relict or legacy riparian trees. Legacy riparian trees occurred in limited numbers at all sites sampled. A reachscale population census of these trees indicated that the 10-m belt transects tended to underestimate both stem density and basal area for these riparian forest elements and that a complete reach-scale census of legacy trees averaged less than one hour per site.

  15. Tamarisk coalition - native riparian plant materials program

    Treesearch

    Stacy Kolegas

    2012-01-01

    The Tamarisk Coalition (TC), a nonprofit organization dedicated to riparian restoration in the western United States, has created a Native Plant Materials Program to address the identified need for native riparian plant species for use in revegetation efforts on the Colorado Plateau. The specific components of the Native Plant Materials Program include: 1) provide seed...

  16. The influence of riparian vegetation on the energy input of the rivers Lafnitz and Pinka

    NASA Astrophysics Data System (ADS)

    Holzapfel, Gerda; Rauch, Hans Peter; Weihs, Philipp; Trimmel, Heidelinde; Formayer, Herbert; Leitner, Patrick; Graf, Wolfram; Melcher, Andreas; Dossi, Florian

    2013-04-01

    In Central Europe freshwater ecosystems have to deal with a loss of habitat structures due to channelisation and standardisation. Unimpaired streams and rivers are very rare, which leads to a few, remaining populations of sensitive invertebrate species which are severely fragmented. This progress is mainly noticed in lowland rivers in agricultural intensely used areas, where habitat degradation and pollution affect the ecosystems. Additional pressures on the freshwater systems will be expected due to climate change effects. In the Austrian Lowlands, an increase of air temperature about 2-2.5 °C is predicted till 2040. This will in turn lead to the highest increase in water temperature in the lowland rivers of the "Hungarian Plains", Ecoregion 11 on which the impacts of climate change will most likely be highest in Austria. Global warming on its own may lead to severe changes in aquatic ecosystems. Human impacts increase the negative effects even more. Main factors for a sustainable survival of benthic invertebrates and fishes are closely connected with parameters like water temperature, the availability of oxygen and nutrients, or radiation and nutrients for primary production which are closely related to climate. Natural bank vegetation reduces the influx of solar radiation as well as it forms a microclimate of its own and could provide very important niches for terrestrial and aquatic stages. Riparian areas with trees provide direct shade for the water body and thus avoiding the corresponding increase in water temperature. Wide riparian wooded areas can even decrease evaporation and increase the relative air humidity, which contributes to reducing water temperature. Input of deadwood like trees or logs represents essential habitats for invertebrates and fish assemblages. Its presence is one essential drivers of bed-morphology creating heterogeneous instream habitat patterns. In the framework of the project BIO_CLIC the potential of riparian vegetation to

  17. [Distribution pattern of rare plants along riparian zone and its implication for conservation in Shennongjia area].

    PubMed

    Jiang, Mingxi; Deng, Hongbing; Cai, Qinghua

    2002-11-01

    Due to the importance of riparian zone in maintaining and protecting regional biodiversity, more and more ecologists paid their attentions to riparian zone, and had been aware of the important effects of riparian zone in basic study and practical management. In this study, forty sampling belts (10 m x 100 m) parallel to the bank of Xiangxi River at different elevations in Shennongjia area were selected to investigate the riparian vegetation and rare plants. Fourteen species of rare plants were found in riparian zone, accounting for 42.4% of total rare plant species in Shennongjia area. The main distribution range of the fourteen rare plant species was the mixed evergreen and deciduous broadleaved forest at elevation of 1200-1800 m, where species diversity of plant community was the maximum at the moderate elevation. Fourteen rare plant species could be divided into three groups against the elevation, namely low elevation species group, moderate elevation species group, and high elevation group. In the paper, the authors discussed the reasons forming the distribution pattern of rare plant species, and pointed out the important function of riparian zone on rare plant species protection.

  18. Pervasive hydrologic effects on freshwater mussels and riparian trees in southeastern floodplain ecosystems

    Treesearch

    Andrew L. Rypel; Wendell R. Haag; Robert H. Findlay

    2009-01-01

    We present long-term growth trends for 13 freshwater mussel species from two unregulated rivers and one regulated river in the southeastern U.S. Coastal Plain. We also collected baldcypress (Taxodium distichum (L.) Rich.) tree cores adjacent to mussel collection sites in one river and directly compared tree and mussel chronologies in this river. To extend our analysis...

  19. Testing for Polytomies in Phylogenetic Species Trees Using Quartet Frequencies.

    PubMed

    Sayyari, Erfan; Mirarab, Siavash

    2018-02-28

    Phylogenetic species trees typically represent the speciation history as a bifurcating tree. Speciation events that simultaneously create more than two descendants, thereby creating polytomies in the phylogeny, are possible. Moreover, the inability to resolve relationships is often shown as a (soft) polytomy. Both types of polytomies have been traditionally studied in the context of gene tree reconstruction from sequence data. However, polytomies in the species tree cannot be detected or ruled out without considering gene tree discordance. In this paper, we describe a statistical test based on properties of the multi-species coalescent model to test the null hypothesis that a branch in an estimated species tree should be replaced by a polytomy. On both simulated and biological datasets, we show that the null hypothesis is rejected for all but the shortest branches, and in most cases, it is retained for true polytomies. The test, available as part of the Accurate Species TRee ALgorithm (ASTRAL) package, can help systematists decide whether their datasets are sufficient to resolve specific relationships of interest.

  20. Testing for Polytomies in Phylogenetic Species Trees Using Quartet Frequencies

    PubMed Central

    Sayyari, Erfan

    2018-01-01

    Phylogenetic species trees typically represent the speciation history as a bifurcating tree. Speciation events that simultaneously create more than two descendants, thereby creating polytomies in the phylogeny, are possible. Moreover, the inability to resolve relationships is often shown as a (soft) polytomy. Both types of polytomies have been traditionally studied in the context of gene tree reconstruction from sequence data. However, polytomies in the species tree cannot be detected or ruled out without considering gene tree discordance. In this paper, we describe a statistical test based on properties of the multi-species coalescent model to test the null hypothesis that a branch in an estimated species tree should be replaced by a polytomy. On both simulated and biological datasets, we show that the null hypothesis is rejected for all but the shortest branches, and in most cases, it is retained for true polytomies. The test, available as part of the Accurate Species TRee ALgorithm (ASTRAL) package, can help systematists decide whether their datasets are sufficient to resolve specific relationships of interest. PMID:29495636

  1. Climate and local geomorphic interactions drive patterns of riparian forest decline along a Mediterranean Basin river

    NASA Astrophysics Data System (ADS)

    Stella, John C.; Riddle, Jess; Piégay, Hervé; Gagnage, Matthieu; Trémélo, Marie-Laure

    2013-11-01

    Dynamic fluvial processes strongly influence ecological communities and ecosystem health in riverine and riparian ecosystems, particularly in drought-prone regions. In these systems, there is a need to develop tools to measure impacts from local and regional hydrogeomorphic changes on the key biological and physical processes that sustain riparian ecosystem health and potential recovery. We used dendrochronology of Populus nigra, a riparian tree that is vulnerable to changes in local hydrology, to analyze ecosystem response following channel incision due to gravel mining along the Drôme River, a Mediterranean Basin stream in southern France. We cored 55 trees at seven floodplain sites, measured ring widths, and calculated basal area growth to compare the severity and timing of local growth decline along the river. Current basal area increment (BAI) growth per tree ranged almost 10-fold among sites (7.7 ± 1.3 to 63.9 ± 15.2 cm2 year- 1, mean ± SE) and these differences were significant. Mean BAI was correlated positively with the proportion of healthy trees at a site, and negatively with proportion of dead canopy area. Regime shift analysis of the tree-ring series indicates that tree growth declined significantly at four sites since 1978, coincident with documented channel incision. In addition, patterns of low growth and crown dieback are consistent with stress due to reduced water supply. The most impaired sites were not directly adjacent to local mining pits visible on aerial photographs, nor did the sequence of growth regime shifts suggest a pattern of channel incision progressing from these areas. The initiation of site growth declines was most typically associated with drought years, and the most impaired sites were spatially distributed to suggest the influence of local bedrock controls on soil depth. Climate in the Drôme basin and in the Mediterranean region is trending significantly toward hotter growing seasons with a decrease in summer river

  2. Importance of riparian forests in urban catchments contingent on sediment and hydrologic regimes

    USGS Publications Warehouse

    Roy, A.H.; Freeman, Mary C.; Freeman, B.J.; Wenger, S.J.; Meyer, J.L.; Ensign, W.E.

    2006-01-01

    Forested riparian corridors are thought to minimize impacts of landscape disturbance on stream ecosystems; yet, the effectiveness of streamside forests in mitigating disturbance in urbanizing catchments is unknown. We expected that riparian forests would provide minimal benefits for fish assemblages in streams that are highly impaired by sediment or hydrologic alteration. We tested this hypothesis in 30 small streams along a gradient of urban disturbance (1–65% urban land cover). Species expected to be sensitive to disturbance (i.e., fluvial specialists and “sensitive” species that respond negatively to urbanization) were best predicted by models including percent forest cover in the riparian corridor and a principal components axis describing sediment disturbance. Only sites with coarse bed sediment and low bed mobility (vs. sites with high amounts of fine sediment) had increased richness and abundances of sensitive species with higher percent riparian forests, supporting our hypothesis that response to riparian forests is contingent on the sediment regime. Abundances of Etheostoma scotti, the federally threatened Cherokee darter, were best predicted by models with single variables representing stormflow (r2 = 0.34) and sediment (r2 = 0.23) conditions. Lentic-tolerant species richness and abundance responded only to a variable representing prolonged duration of low-flow conditions. For these species, hydrologic alteration overwhelmed any influence of riparian forests on stream biota. These results suggest that, at a minimum, catchment management strategies must simultaneously address hydrologic, sediment, and riparian disturbance in order to protect all aspects of fish assemblage integrity.

  3. Importance of riparian forests in urban catchments contingent on sediment and hydrologic regimes.

    PubMed

    Roy, Allison H; Freeman, Mary C; Freeman, Byron J; Wenger, Seth J; Ensign, William E; Meyer, Judith L

    2006-04-01

    Forested riparian corridors are thought to minimize impacts of landscape disturbance on stream ecosystems; yet, the effectiveness of streamside forests in mitigating disturbance in urbanizing catchments is unknown. We expected that riparian forests would provide minimal benefits for fish assemblages in streams that are highly impaired by sediment or hydrologic alteration. We tested this hypothesis in 30 small streams along a gradient of urban disturbance (1-65% urban land cover). Species expected to be sensitive to disturbance (i.e., fluvial specialists and "sensitive" species that respond negatively to urbanization) were best predicted by models including percent forest cover in the riparian corridor and a principal components axis describing sediment disturbance. Only sites with coarse bed sediment and low bed mobility (vs. sites with high amounts of fine sediment) had increased richness and abundances of sensitive species with higher percent riparian forests, supporting our hypothesis that response to riparian forests is contingent on the sediment regime. Abundances of Etheostoma scotti, the federally threatened Cherokee darter, were best predicted by models with single variables representing stormflow (r(2) = 0.34) and sediment (r(2) = 0.23) conditions. Lentic-tolerant species richness and abundance responded only to a variable representing prolonged duration of low-flow conditions. For these species, hydrologic alteration overwhelmed any influence of riparian forests on stream biota. These results suggest that, at a minimum, catchment management strategies must simultaneously address hydrologic, sediment, and riparian disturbance in order to protect all aspects of fish assemblage integrity.

  4. Chapter 7: Changing values of riparian ecosystems

    Treesearch

    Malchus B. Baker; Leonard F. DeBano; Peter F. Ffolliott

    1999-01-01

    Riparian ecosystems in the Central Arizona Highlands, and throughout the Southwest in general, provided the necessary water for humans, livestock, and agricultural crops during settlement by Europeans in the late 1800s. Other resources available in these moist environments included wildlife and fish, livestock and wildlife forage, and shade. Trees were often used for...

  5. Effects of anthropogenic fragmentation and livestock grazing on western riparian bird communities

    USGS Publications Warehouse

    Tewksbury, J.J.; Black, A.E.; Nur, N.; Saab, V.A.; Logan, B.D.; Dobkin, D.S.

    2002-01-01

    Deciduous vegetation along streams and rivers provides breeding habitat to more bird species than any other plant community in the West, yet many riparian areas are heavily grazed by cattle and surrounded by increasingly developed landscapes. The combination of cattle grazing and landscape alteration (habitat loss and fragmentation) are thought to be critical factors affecting the richness and composition of breeding bird communities. Here, we examine the influence of land use and cattle grazing on deciduous riparian bird communities across seven riparian systems in five western states: Montana, Idaho, Nevada, Oregon and California. These riparian systems are embedded in landscapes ranging from nearly pristine to almost completely agricultural. We conducted landscape analysis at two spatial scales: local landscapes (all land within 500 m of each survey location) and regional landscapes (all land within 5 km of each survey location). Despite the large differences among riparian systems, we found a number of consistent effects of landscape change and grazing. Of the 87 species with at least 15 detections on two or more rivers, 44 species were less common in grazed sites, in heavily settled or agricultural landscapes, or in areas with little deciduous riparian habitat. The Veery (Catharus fuscescens), Song Sparrow (Melospiza melodia), Red-naped Sapsucker (Sphyrapicus nuchalis), Fox Sparrow (Passerella iliaca), and American Redstart (Setophaga ruticilla) were all less common under at least three of these conditions. In contrast, 33 species were significantly more common in one or more of these conditions. Sites surrounded by greater deciduous habitat had higher overall avian abundance and 22 species had significantly higher individual abundances in areas with more deciduous habitat. Yet, areas with more agriculture at the regional scale also had higher total avian abundance, due in large part to greater abundance of European Starling (Sturnus vulgaris), American Robin

  6. Inundation and Fire Shape the Structure of Riparian Forests in the Pantanal, Brazil.

    PubMed

    Arruda, Wellinton de Sá; Oldeland, Jens; Paranhos Filho, Antonio Conceição; Pott, Arnildo; Cunha, Nicolay L; Ishii, Iria Hiromi; Damasceno-Junior, Geraldo Alves

    2016-01-01

    Inundation and fire can affect the structure of riparian vegetation in wetlands. Our aim was to verify if there are differences in richness, abundance, basal area, composition and topographic preference of woody species in riparian forests related to the fire history, flooding duration, or the interaction between both. The study was conducted in the riparian forests of the Paraguay River some of which were burned three times between 2001 and 2011. We sampled trees with a girth of at least 5 cm at breast height in 150 5 × 10 m plots (79 burned and 71 unburned). We also measured height of the flood mark and estimated the flooding duration of each plot. We performed Generalized Linear Mixed Models to verify differences in richness, basal area, and abundance of individuals associated to interaction of fire and inundation. We used an analysis of similarity (ANOSIM) and indicator species analysis to identify differences in composition of species and the association with burned and unburned area according to different levels of inundation. Finally, we used a hierarchical set of Generalized Linear Models (GLM), the so-called HOF models, to analyse each species' specific response to inundation based on topography and to determine their preferred optimal topographic position for both burned as well as unburned areas. Richness was positively associated with elevation only in burned areas while abundance was negatively influenced by inundation only in burned areas. Basal area was negatively associated with time of inundation independent of fire history. There were 15 species which were significant indicators for at least one combination of the studied factors. We found nine species in burned areas and 15 in unburned areas, with response curves in HOF models along the inundation gradient. From these, five species shifted their optimal position along the inundation gradient in burned areas. The interaction of fire and inundation did not appear to affect the basal area, but it

  7. Water relations of riparian plants from warm desert regions

    USGS Publications Warehouse

    Smith, S.D.; Devitt, Dale A.; Cleverly, James R.; Busch, David E.

    1998-01-01

    Riparian plants have been classified as 'drought avoiders' due to their access to an abundant subsurface water supply. Recent water-relations research that tracks water sources of riparian plants using the stable isotopes of water suggests that many plants of the riparian zone use ground water rather than stream water, and not all riparian plants are obligate phreatophytes (dependent on ground water as a moisture source) but may occasionally be dependent of unsaturated soil moisture sources. A more thorough understanding of riparian plant-water relations must include water-source dynamics and how those dynamics vary over both space and time. Many rivers in the desert Southwest have been invaded by the exotic shrub Tamarix ramosissima (saltcedar). Our studies of Tamarix invasion into habitats formerly dominated by native riparian forests of primarily Populus and Salix have shown that Tamarix successfully invades these habitats because of its (1) greater tolerance to water stress and salinity, (2) status as a facultative, rather than obligate, phreatophyte and, therefore, its ability to recover from droughts and periods of ground-water drawdown, and (3) superior regrowth after fire. Analysis of water- loss rates indicate that Tamarix-dominated stands can have extremely high evapotranspiration rates when water tables are high but not necessarily when water tables are lower. Tamarix has leaf-level transpiration rates that are comparable to native species, whereas sap-flow rates per unit sapwood area are higher than in natives, suggesting that Tamarix maintains higher leaf area than can natives, probably due to its greater water stress tolerance. Tamarix desiccates and salinizes floodplains, due to its salt exudation and high transpiration rates, and may also accelerate fire cycles, thus predisposing these ecosystems to further loss of native taxa. Riparian species on regulated rivers can be exposed to seasonal water stress due to depression of floodplain water tables

  8. tropiTree: An NGS-Based EST-SSR Resource for 24 Tropical Tree Species

    PubMed Central

    Russell, Joanne R.; Hedley, Peter E.; Cardle, Linda; Dancey, Siobhan; Morris, Jenny; Booth, Allan; Odee, David; Mwaura, Lucy; Omondi, William; Angaine, Peter; Machua, Joseph; Muchugi, Alice; Milne, Iain; Kindt, Roeland; Jamnadass, Ramni; Dawson, Ian K.

    2014-01-01

    The development of genetic tools for non-model organisms has been hampered by cost, but advances in next-generation sequencing (NGS) have created new opportunities. In ecological research, this raises the prospect for developing molecular markers to simultaneously study important genetic processes such as gene flow in multiple non-model plant species within complex natural and anthropogenic landscapes. Here, we report the use of bar-coded multiplexed paired-end Illumina NGS for the de novo development of expressed sequence tag-derived simple sequence repeat (EST-SSR) markers at low cost for a range of 24 tree species. Each chosen tree species is important in complex tropical agroforestry systems where little is currently known about many genetic processes. An average of more than 5,000 EST-SSRs was identified for each of the 24 sequenced species, whereas prior to analysis 20 of the species had fewer than 100 nucleotide sequence citations. To make results available to potential users in a suitable format, we have developed an open-access, interactive online database, tropiTree (http://bioinf.hutton.ac.uk/tropiTree), which has a range of visualisation and search facilities, and which is a model for the efficient presentation and application of NGS data. PMID:25025376

  9. Evidence of tree species' range shifts in a complex landscape.

    PubMed

    Monleon, Vicente J; Lintz, Heather E

    2015-01-01

    Climate change is expected to change the distribution of species. For long-lived, sessile species such as trees, tracking the warming climate depends on seedling colonization of newly favorable areas. We compare the distribution of seedlings and mature trees for all but the rarest tree species in California, Oregon and Washington, United States of America, a large, environmentally diverse region. Across 46 species, the mean annual temperature of the range of seedlings was 0.120°C colder than that of the range of trees (95% confidence interval from 0.096 to 0.144°C). The extremes of the seedling distributions also shifted towards colder temperature than those of mature trees, but the change was less pronounced. Although the mean elevation and mean latitude of the range of seedlings was higher than and north of those of the range of mature trees, elevational and latitudinal shifts run in opposite directions for the majority of the species, reflecting the lack of a direct biological relationship between species' distributions and those variables. The broad scale, environmental diversity and variety of disturbance regimes and land uses of the study area, the large number and exhaustive sampling of tree species, and the direct causal relationship between the temperature response and a warming climate, provide strong evidence to attribute the observed shifts to climate change.

  10. Response of tree growth and species coexistence to density and species evenness in a young forest plantation with two competing species.

    PubMed

    Collet, Catherine; Ningre, François; Barbeito, Ignacio; Arnaud, Anthony; Piboule, Alexandre

    2014-03-01

    There is considerable evidence for the presence of positive species diversity-productivity relationships in plant populations, but the population parameters determining the type and strength of the relationship are poorly defined. Relationships between species evenness and tree survival or species coexistence are not well established. The objective of this study was to quantify the joint effects of density and species evenness on tree productivity and species coexistence. A 12-year-old experimental tree plantation mixing two species according to a double gradient of density and species proportion was used. A neighbourhood approach was employed and descriptors of local competition were used to model individual tree growth. Fagus sylvatica and Acer pseudoplatanus were used as model species, as they can be considered as ecologically equivalent in their young stages. Density and tree size were primary factors determining individual growth and stand productivity. Species identity had a significant, but less pronounced, role. Stand productivity was highest when species evenness was close to 1 and slightly lower in uneven mixtures. The reduction in stand productivity when species evenness decreased was of similar magnitude irrespective of which species became dominant, indicating symmetric effects for the two species. When examining individual tree growth in response to species proportion for each species separately, it was observed for both species that individual trees exhibited greater growth in uneven mixtures in which the other species was more frequent. The results suggest that mixtures of these two functionally similar species have the highest production at maximum evenness, indicating a complementary effect between them. The presence of a mixture combines both stabilizing mechanisms (individuals from both species show higher growth when surrounded by individuals from the other species) and equalizing mechanisms (the two species have very similar growth curves

  11. Ecosystem response to removal of exotic riparian shrubs and a transition to upland vegetation

    USGS Publications Warehouse

    Reynolds, Lindsay V.; Cooper, David J.

    2011-01-01

    Understanding plant community change over time is essential for managing important ecosystems such as riparian areas. This study analyzed historic vegetation using soil seed banks and the effects of riparian shrub removal treatments and channel incision on ecosystem and plant community dynamics in Canyon de Chelly National Monument, Arizona. We focused on how seeds, nutrients, and ground water influence the floristic composition of post-treatment vegetation and addressed three questions: (1) How does pre-treatment soil seed bank composition reflect post-treatment vegetation composition? (2) How does shrub removal affect post-treatment riparian vegetation composition, seed rain inputs, and ground water dynamics? and (3) Is available soil nitrogen increased near dead Russian olive plants following removal and does this influence post-treatment vegetation? We analyzed seed bank composition across the study area, analyzed differences in vegetation, ground water levels, and seed rain between control, cut-stump and whole-plant removal areas, and compared soil nitrogen and vegetation near removed Russian olive to areas lacking Russian olive. The soil seed bank contained more riparian plants, more native and fewer exotic plants than the extant vegetation. Both shrub removal methods decreased exotic plant cover, decreased tamarisk and Russian olive seed inputs, and increased native plant cover after 2 years. Neither method increased ground water levels. Soil near dead Russian olive trees indicated a short-term increase in soil nitrogen following plant removal but did not influence vegetation composition compared to areas without Russian olive. Following tamarisk and Russian olive removal, our study sites were colonized by upland plant species. Many western North American rivers have tamarisk and Russian olive on floodplains abandoned by channel incision, river regulation or both. Our results are widely applicable to sites where drying has occurred and vegetation

  12. Non-target effects on aquatic decomposer organisms of imidacloprid as a systemic insecticide to control emerald ash borer in riparian trees.

    PubMed

    Kreutzweiser, David; Good, Kevin; Chartrand, Derek; Scarr, Taylor; Thompson, Dean

    2007-11-01

    Imidacloprid is effective against emerald ash borer when applied as a systemic insecticide. Following stem or soil injections to trees in riparian areas, imidacloprid residues could be indirectly introduced to aquatic systems via leaf fall or leaching. Either route of exposure may affect non-target, aquatic decomposer organisms. Leaves from ash trees treated with imidacloprid at two field rates and an intentionally-high concentration were added to aquatic microcosms. Leaves from trees treated at the two field rates contained imidacloprid concentrations of 0.8-1.3 ppm, and did not significantly affect leaf-shredding insect survival, microbial respiration or microbial decomposition rates. Insect feeding rates were significantly inhibited at foliar concentrations of 1.3 ppm but not at 0.8 ppm. Leaves from intentionally high-dose trees contained concentrations of about 80 ppm, and resulted in 89-91% mortality of leaf-shredding insects, but no adverse effects on microbial respiration and decomposition rates. Imidacloprid applied directly to aquatic microcosms to simulate leaching from soils was at least 10 times more toxic to aquatic insects than the foliar concentrations, with high mortality at 0.13 ppm and significant feeding inhibition at 0.012 ppm.

  13. Inundation and Fire Shape the Structure of Riparian Forests in the Pantanal, Brazil

    PubMed Central

    Arruda, Wellinton de Sá; Oldeland, Jens; Paranhos Filho, Antonio Conceição; Pott, Arnildo; Cunha, Nicolay L.; Ishii, Iria Hiromi; Damasceno-Junior, Geraldo Alves

    2016-01-01

    Inundation and fire can affect the structure of riparian vegetation in wetlands. Our aim was to verify if there are differences in richness, abundance, basal area, composition and topographic preference of woody species in riparian forests related to the fire history, flooding duration, or the interaction between both. The study was conducted in the riparian forests of the Paraguay River some of which were burned three times between 2001 and 2011. We sampled trees with a girth of at least 5 cm at breast height in 150 5 × 10 m plots (79 burned and 71 unburned). We also measured height of the flood mark and estimated the flooding duration of each plot. We performed Generalized Linear Mixed Models to verify differences in richness, basal area, and abundance of individuals associated to interaction of fire and inundation. We used an analysis of similarity (ANOSIM) and indicator species analysis to identify differences in composition of species and the association with burned and unburned area according to different levels of inundation. Finally, we used a hierarchical set of Generalized Linear Models (GLM), the so-called HOF models, to analyse each species’ specific response to inundation based on topography and to determine their preferred optimal topographic position for both burned as well as unburned areas. Richness was positively associated with elevation only in burned areas while abundance was negatively influenced by inundation only in burned areas. Basal area was negatively associated with time of inundation independent of fire history. There were 15 species which were significant indicators for at least one combination of the studied factors. We found nine species in burned areas and 15 in unburned areas, with response curves in HOF models along the inundation gradient. From these, five species shifted their optimal position along the inundation gradient in burned areas. The interaction of fire and inundation did not appear to affect the basal area, but it

  14. On the Number of Non-equivalent Ancestral Configurations for Matching Gene Trees and Species Trees.

    PubMed

    Disanto, Filippo; Rosenberg, Noah A

    2017-09-14

    An ancestral configuration is one of the combinatorially distinct sets of gene lineages that, for a given gene tree, can reach a given node of a specified species tree. Ancestral configurations have appeared in recursive algebraic computations of the conditional probability that a gene tree topology is produced under the multispecies coalescent model for a given species tree. For matching gene trees and species trees, we study the number of ancestral configurations, considered up to an equivalence relation introduced by Wu (Evolution 66:763-775, 2012) to reduce the complexity of the recursive probability computation. We examine the largest number of non-equivalent ancestral configurations possible for a given tree size n. Whereas the smallest number of non-equivalent ancestral configurations increases polynomially with n, we show that the largest number increases with [Formula: see text], where k is a constant that satisfies [Formula: see text]. Under a uniform distribution on the set of binary labeled trees with a given size n, the mean number of non-equivalent ancestral configurations grows exponentially with n. The results refine an earlier analysis of the number of ancestral configurations considered without applying the equivalence relation, showing that use of the equivalence relation does not alter the exponential nature of the increase with tree size.

  15. Effects of tree species, water and nitrogen on mycorrhizal C flux

    NASA Astrophysics Data System (ADS)

    Menyailo, O.; Matvienko, A.

    2012-12-01

    Mycorrhiza plays an important role in global carbon cycle, especially, in forest soils, yet the effect of tree species on the amount and timing of C transfer through roots to myccorhiza is largely unknown. We studied the C transport to mycorrhiza under 6 most commonly dominant in boreal forests tree species using the mesh collars installed at the Siberian afforestation experiment. The CO2 flux from mycorrhizal and non-mycorrhizal mesh collars indicated the mycorrhizal C flux. Tree species strongly differed in C flux to mycorrhiza: more C was transferred by deciduous species than by conifers. The mycorrhizal CO2 flux was not linked to soil temperature but rather to trees phenology and to photosynthetic activity. All tree species transfered more carbon to mycorrhiza during the second half of summer and in September, this is because all the carbon photosynthesized earlier is used for building the tree biomass. Seasonal variation in C transfer to mycorrhiza was much larger than hourly variation (within a day). Nitrogen application (50 kg/ha) increased mycorrhizal C flux only under Scots pine, but not under larch, thus the effect of N application is tree species dependent. We found under most tree species that more C was transferred by trees to mycorrhiza in root-free collars, where the soil moisture was higher than in collars with roots. This suggests that trees preferentially support those parts of mycorrhiza, which can gain extra-resources.

  16. Soil nutrients influence spatial distributions of tropical tree species.

    PubMed

    John, Robert; Dalling, James W; Harms, Kyle E; Yavitt, Joseph B; Stallard, Robert F; Mirabello, Matthew; Hubbell, Stephen P; Valencia, Renato; Navarrete, Hugo; Vallejo, Martha; Foster, Robin B

    2007-01-16

    The importance of niche vs. neutral assembly mechanisms in structuring tropical tree communities remains an important unsettled question in community ecology [Bell G (2005) Ecology 86:1757-1770]. There is ample evidence that species distributions are determined by soils and habitat factors at landscape (<10(4) km(2)) and regional scales. At local scales (<1 km(2)), however, habitat factors and species distributions show comparable spatial aggregation, making it difficult to disentangle the importance of niche and dispersal processes. In this article, we test soil resource-based niche assembly at a local scale, using species and soil nutrient distributions obtained at high spatial resolution in three diverse neotropical forest plots in Colombia (La Planada), Ecuador (Yasuni), and Panama (Barro Colorado Island). Using spatial distribution maps of >0.5 million individual trees of 1,400 species and 10 essential plant nutrients, we used Monte Carlo simulations of species distributions to test plant-soil associations against null expectations based on dispersal assembly. We found that the spatial distributions of 36-51% of tree species at these sites show strong associations to soil nutrient distributions. Neutral dispersal assembly cannot account for these plant-soil associations or the observed niche breadths of these species. These results indicate that belowground resource availability plays an important role in the assembly of tropical tree communities at local scales and provide the basis for future investigations on the mechanisms of resource competition among tropical tree species.

  17. Soil nutrients influence spatial distributions of tropical tree species

    PubMed Central

    John, Robert; Dalling, James W.; Harms, Kyle E.; Yavitt, Joseph B.; Stallard, Robert F.; Mirabello, Matthew; Hubbell, Stephen P.; Valencia, Renato; Navarrete, Hugo; Vallejo, Martha; Foster, Robin B.

    2007-01-01

    The importance of niche vs. neutral assembly mechanisms in structuring tropical tree communities remains an important unsettled question in community ecology [Bell G (2005) Ecology 86:1757–1770]. There is ample evidence that species distributions are determined by soils and habitat factors at landscape (<104 km2) and regional scales. At local scales (<1 km2), however, habitat factors and species distributions show comparable spatial aggregation, making it difficult to disentangle the importance of niche and dispersal processes. In this article, we test soil resource-based niche assembly at a local scale, using species and soil nutrient distributions obtained at high spatial resolution in three diverse neotropical forest plots in Colombia (La Planada), Ecuador (Yasuni), and Panama (Barro Colorado Island). Using spatial distribution maps of >0.5 million individual trees of 1,400 species and 10 essential plant nutrients, we used Monte Carlo simulations of species distributions to test plant–soil associations against null expectations based on dispersal assembly. We found that the spatial distributions of 36–51% of tree species at these sites show strong associations to soil nutrient distributions. Neutral dispersal assembly cannot account for these plant–soil associations or the observed niche breadths of these species. These results indicate that belowground resource availability plays an important role in the assembly of tropical tree communities at local scales and provide the basis for future investigations on the mechanisms of resource competition among tropical tree species. PMID:17215353

  18. Species trees for the tree swallows (Genus Tachycineta): an alternative phylogenetic hypothesis to the mitochondrial gene tree.

    PubMed

    Dor, Roi; Carling, Matthew D; Lovette, Irby J; Sheldon, Frederick H; Winkler, David W

    2012-10-01

    The New World swallow genus Tachycineta comprises nine species that collectively have a wide geographic distribution and remarkable variation both within- and among-species in ecologically important traits. Existing phylogenetic hypotheses for Tachycineta are based on mitochondrial DNA sequences, thus they provide estimates of a single gene tree. In this study we sequenced multiple individuals from each species at 16 nuclear intron loci. We used gene concatenated approaches (Bayesian and maximum likelihood) as well as coalescent-based species tree inference to reconstruct phylogenetic relationships of the genus. We examined the concordance and conflict between the nuclear and mitochondrial trees and between concatenated and coalescent-based inferences. Our results provide an alternative phylogenetic hypothesis to the existing mitochondrial DNA estimate of phylogeny. This new hypothesis provides a more accurate framework in which to explore trait evolution and examine the evolution of the mitochondrial genome in this group. Copyright © 2012 Elsevier Inc. All rights reserved.

  19. Abundance and species richness of snakes along the Middle Rio Grande riparian forest in New Mexico

    Treesearch

    Heather L. Bateman; Alice Chung-MacCoubrey; Howard L. Snell; Deborah M. Finch

    2009-01-01

    To understand the effects of removal of non-native plants and fuels on wildlife in the riparian forest of the Middle Rio Grande in New Mexico, we monitored snakes from 2000 to 2006 using trap arrays of drift fences, pitfalls, and funnel traps. We recorded 158 captures of 13 species of snakes from 12 study sites. We captured more snakes in funnel traps than in pitfalls...

  20. Flora of the San Pedro Riparian National Conservation Area, Cochise County, Arizona

    Treesearch

    Elizabeth Makings

    2005-01-01

    The flora of the San Pedro Riparian National Conservation Area (SPRNCA) consists of 618 taxa from 92 families, including a new species of Eriogonum and four new State records. The vegetation communities include Chihuahuan Desertscrub, cottonwood-willow riparian corridors, mesquite terraces, sacaton grasslands, rocky outcrops, and cienegas. Species...

  1. Relating tree growth to rainfall in Bolivian rain forests: a test for six species using tree ring analysis.

    PubMed

    Brienen, Roel J W; Zuidema, Pieter A

    2005-11-01

    Many tropical regions show one distinct dry season. Often, this seasonality induces cambial dormancy of trees, particularly if these belong to deciduous species. This will often lead to the formation of annual rings. The aim of this study was to determine whether tree species in the Bolivian Amazon region form annual rings and to study the influence of the total amount and seasonal distribution of rainfall on diameter growth. Ring widths were measured on stem discs of a total of 154 trees belonging to six rain forest species. By correlating ring width and monthly rainfall data we proved the annual character of the tree rings for four of our study species. For two other species the annual character was proved by counting rings on trees of known age and by radiocarbon dating. The results of the climate-growth analysis show a positive relationship between tree growth and rainfall in certain periods of the year, indicating that rainfall plays a major role in tree growth. Three species showed a strong relationship with rainfall at the beginning of the rainy season, while one species is most sensitive to the rainfall at the end of the previous growing season. These results clearly demonstrate that tree ring analysis can be successfully applied in the tropics and that it is a promising method for various research disciplines.

  2. BLM Density Management and Riparian Buffer Study: Establishment Report and Study Plan

    USGS Publications Warehouse

    Cissel, John H.; Anderson, P.D.; Olson, Deanna H.; Puettmann, Klaus; Berryman, Shanti; Chan, Samuel; Thompson, Charley

    2006-01-01

    The Bureau of Land Management (BLM), Pacific Northwest Research Station (PNW), U.S. Geological Survey (USGS), and Oregon State University (OSU) established the BLM Density Management and Riparian Buffer Study (DMS) in 1994 to demonstrate and test options for young stand management to meet Northwest Forest Plan objectives in western Oregon. The primary objectives of the DMS are to evaluate the effects of alternative forest density management treatments in young stands on the development of important late-successional forest habitat attributes and to assess the combined effects of density management and alternative riparian buffer widths on aquatic and riparian ecosystems. The DMS consists of three integrated studies: initial thinning, rethinning, and riparian buffer widths. The initial thinning study was installed in 50- to 80-year-old stands that had never been commercially thinned. Four stand treatments of 30-60 acres each were established at each of seven study sites: (1) unthinned control, (2) high density retention [120 trees per acre (TPA)], (3) moderate density retention (80 TPA), and (4) variable density retention (40-120 TPA). Small (1/4 to 1 acre in size) leave islands were included in all treatments except the control, and small patch cuts (1/4 to 1 acre in size) were included in the moderate and variable density treatments. An eighth site, Callahan Creek, contains a partial implementation of the study design. The rethinning study was installed in four 70- to 90-year-old stands that previously had been commercially thinned. Each study stand was split into two parts: one part as an untreated control and the other part as a rethinning (30-60 TPA). The riparian buffer study was nested within the moderate density retention treatment at each of the eight initial thinning study sites and two rethinning sites. Alternative riparian buffer widths included: (1) streamside retention (one tree canopy width, or 20-25 feet), (2) variable width (follows topographic and

  3. Rapid and accurate species tree estimation for phylogeographic investigations using replicated subsampling.

    PubMed

    Hird, Sarah; Kubatko, Laura; Carstens, Bryan

    2010-11-01

    We describe a method for estimating species trees that relies on replicated subsampling of large data matrices. One application of this method is phylogeographic research, which has long depended on large datasets that sample intensively from the geographic range of the focal species; these datasets allow systematicists to identify cryptic diversity and understand how contemporary and historical landscape forces influence genetic diversity. However, analyzing any large dataset can be computationally difficult, particularly when newly developed methods for species tree estimation are used. Here we explore the use of replicated subsampling, a potential solution to the problem posed by large datasets, with both a simulation study and an empirical analysis. In the simulations, we sample different numbers of alleles and loci, estimate species trees using STEM, and compare the estimated to the actual species tree. Our results indicate that subsampling three alleles per species for eight loci nearly always results in an accurate species tree topology, even in cases where the species tree was characterized by extremely rapid divergence. Even more modest subsampling effort, for example one allele per species and two loci, was more likely than not (>50%) to identify the correct species tree topology, indicating that in nearly all cases, computing the majority-rule consensus tree from replicated subsampling provides a good estimate of topology. These results were supported by estimating the correct species tree topology and reasonable branch lengths for an empirical 10-locus great ape dataset. Copyright © 2010 Elsevier Inc. All rights reserved.

  4. Response of tree growth and species coexistence to density and species evenness in a young forest plantation with two competing species

    PubMed Central

    Collet, Catherine; Ningre, François; Barbeito, Ignacio; Arnaud, Anthony; Piboule, Alexandre

    2014-01-01

    Background and Aims There is considerable evidence for the presence of positive species diversity–productivity relationships in plant populations, but the population parameters determining the type and strength of the relationship are poorly defined. Relationships between species evenness and tree survival or species coexistence are not well established. The objective of this study was to quantify the joint effects of density and species evenness on tree productivity and species coexistence. Methods A 12-year-old experimental tree plantation mixing two species according to a double gradient of density and species proportion was used. A neighbourhood approach was employed and descriptors of local competition were used to model individual tree growth. Fagus sylvatica and Acer pseudoplatanus were used as model species, as they can be considered as ecologically equivalent in their young stages. Key Results Density and tree size were primary factors determining individual growth and stand productivity. Species identity had a significant, but less pronounced, role. Stand productivity was highest when species evenness was close to 1 and slightly lower in uneven mixtures. The reduction in stand productivity when species evenness decreased was of similar magnitude irrespective of which species became dominant, indicating symmetric effects for the two species. When examining individual tree growth in response to species proportion for each species separately, it was observed for both species that individual trees exhibited greater growth in uneven mixtures in which the other species was more frequent. Conclusions The results suggest that mixtures of these two functionally similar species have the highest production at maximum evenness, indicating a complementary effect between them. The presence of a mixture combines both stabilizing mechanisms (individuals from both species show higher growth when surrounded by individuals from the other species) and equalizing mechanisms

  5. Tree leaf control on low flow water quality in a small Virginia stream

    USGS Publications Warehouse

    Slack, K.V.; Feltz, H.R.

    1968-01-01

    Impaired water quality in a small stream was related to autumn leaf fall from riparian vegetation. Dissolved oxygen and pH decreased, and water color, specific conductance, iron, manganese, and bicarbonate values increased as the rate of leaf fall increased. Similar quality changes occurred in laboratory cultures of tree leaves in filtered stream water, but the five leaf species studied produced widely differing results. Stream quality improved rapidly following channel flushing by storm flow. Organic loading by tree litter can exert significant control on water composition, especially during low flow.

  6. Responses of riparian reptile communities to damming and urbanization

    USGS Publications Warehouse

    Hunt, Stephanie D.; Guzy, Jacquelyn C.; Price, Steven J.; Halstead, Brian J.; Eskew, Evan A.; Dorcas, Michael E.

    2013-01-01

    Various anthropogenic pressures, including habitat loss, threaten reptile populations worldwide. Riparian zones are critical habitat for many reptile species, but these habitats are also frequently modified by anthropogenic activities. Our study investigated the effects of two riparian habitat modifications-damming and urbanization-on overall and species-specific reptile occupancy patterns. We used time-constrained search techniques to compile encounter histories for 28 reptile species at 21 different sites along the Broad and Pacolet Rivers of South Carolina. Using a hierarchical Bayesian analysis, we modeled reptile occupancy responses to a site's distance upstream from dam, distance downstream from dam, and percent urban land use. The mean occupancy response by the reptile community indicated that reptile occupancy and species richness were maximized when sites were farther upstream from dams. Species-specific occupancy estimates showed a similar trend of lower occupancy immediately upstream from dams. Although the mean occupancy response of the reptile community was positively related to distance downstream from dams, the occupancy response to distance downstream varied among species. Percent urban land use had little effect on the occupancy response of the reptile community or individual species. Our results indicate that the conditions of impoundments and subsequent degradation of the riparian zones upstream from dams may not provide suitable habitat for a number of reptile species.

  7. Challenges in Species Tree Estimation Under the Multispecies Coalescent Model

    PubMed Central

    Xu, Bo; Yang, Ziheng

    2016-01-01

    The multispecies coalescent (MSC) model has emerged as a powerful framework for inferring species phylogenies while accounting for ancestral polymorphism and gene tree-species tree conflict. A number of methods have been developed in the past few years to estimate the species tree under the MSC. The full likelihood methods (including maximum likelihood and Bayesian inference) average over the unknown gene trees and accommodate their uncertainties properly but involve intensive computation. The approximate or summary coalescent methods are computationally fast and are applicable to genomic datasets with thousands of loci, but do not make an efficient use of information in the multilocus data. Most of them take the two-step approach of reconstructing the gene trees for multiple loci by phylogenetic methods and then treating the estimated gene trees as observed data, without accounting for their uncertainties appropriately. In this article we review the statistical nature of the species tree estimation problem under the MSC, and explore the conceptual issues and challenges of species tree estimation by focusing mainly on simple cases of three or four closely related species. We use mathematical analysis and computer simulation to demonstrate that large differences in statistical performance may exist between the two classes of methods. We illustrate that several counterintuitive behaviors may occur with the summary methods but they are due to inefficient use of information in the data by summary methods and vanish when the data are analyzed using full-likelihood methods. These include (i) unidentifiability of parameters in the model, (ii) inconsistency in the so-called anomaly zone, (iii) singularity on the likelihood surface, and (iv) deterioration of performance upon addition of more data. We discuss the challenges and strategies of species tree inference for distantly related species when the molecular clock is violated, and highlight the need for improving the

  8. Modeled distributions of 12 tree species in New York

    Treesearch

    Rachel I. Riemann; Barry T. Wilson; Andrew J. Lister; Oren Cook; Sierra Crane-Murdoch

    2014-01-01

    These maps depict the distribution of 12 tree species across the state of New York. The maps show where these trees do not occur (gray), occasionally occur (pale green), are a minor component (medium green), are a major component (dark green), or are the dominant species (black) in the forest, as determined by that species' total basal area. Basal area is the area...

  9. Integrated monitoring of hydrogeomorphic, vegetative, and edaphic conditions in riparian ecosystems of Great Basin National Park, Nevada

    USGS Publications Warehouse

    Beever, Erik A.; Pyke, D.A.

    2004-01-01

    In contrast to the more incised riparian channels of central Nevada, we observed knickzones, downcutting, and incision only rarely and usually with limited extent in the walking surveys. Downcutting occurred most frequently and extensively in Strawberry and Snake creeks, due in part to their more erodible soils. According to a hydrogeomorphologist with extensive experience in Great Basin riparian systems, the sediment-delivery and hydrologic systems appeared relatively undisturbed in most reaches, with respect to grazing animals and other types of anthropogenic alteration. Site elevation of the 31 transects ranged from 1,950-2,987 m, and stream slope (i.e., gradient) was relatively steep (mean = 9.3%, range 3-16%). Strawberry Creek averaged the lowest maximum water depth, and correspondingly had greatest width/depth ratios. Baker Creek sites averaged the smallest amount of tree-canopy gaps, whereas Snake Creek sites on average had the largest proportion of gaps in understory vegetation. Sites in terrace-bound valley types averaged the lowest slope in the channel as well as the least cover of trees, litter, and vegetation overall, whereas alluviated, boulder-bed canyon sites averaged the greatest widths of the active channel. Sites in Lehman Creek averaged nearly twice as much coarse woody debris as sites from any other creek, whereas Baker Creek sites averaged greatest tree cover (mean = 67%, range 40 – 96%) and species richness (mean = 17.3 species). Multivariate ordinations suggested that sites in leveed outwash valleys and alluvial-fan-influenced valleys had the greatest inter-site heterogeneity in plant composition, whereas sites in incised moraine-filled valleys appeared most homogeneous. Differences among homogeneity of sites within vegetation types were less pronounced, but sites dominated by either aspen and Woodsʼ rose or narrow-leaved cottonwood had the most similar plant communities among sites of the same vegetation type. A number of species were

  10. The role of silviculture in the active management of riparian zone vegetation in the Oregon Coast Range: a partnership between researchers and managers

    Treesearch

    Samuel S. Chan; Margaret David Bailey; Daniel Karnes; Robert Metzger; Walter W., Jr. Kastner

    1997-01-01

    Riparian plant communities are extremely diverse. Their structure and composition can affect fish and wildlife habitat, while trees and associated vegetation can provide sustainable sources of forest products. Management of riparian vegetation can greatly affect these values. Little information exists however, about the consequences of actively managing riparians to...

  11. Tree mortality in mature riparian forest: Implications for Fremont cottonwood conservation in the American southwest

    USGS Publications Warehouse

    Andersen, Douglas

    2015-01-01

    Mature tree mortality rates are poorly documented in desert riparian woodlands. I monitored deaths and calculated annual survivorship probability (Ps) in 2 groups of large (27–114 cm DBH), old (≥40 years old) Fremont cottonwood (Populus fremontii Wats.) in a stand along the free-flowing Yampa River in semiarid northwestern Colorado. Ps = 0.993 year-1 in a group (n = 126) monitored over 2003–2013, whereas Ps = 0.985 year-1 in a group (n = 179) monitored over the same period plus 3 earlier years (2000–2003) that included drought and a defoliating insect outbreak. Assuming Ps was the same for both groups during the 10-year postdrought period, the data indicate that Ps = 0.958 year-1 during the drought. I found no difference in canopy dieback level between male and female survivors. Mortality was equal among size classes, suggesting Ps is independent of age, but published longevity data imply that either Ps eventually declines with age or, as suggested in this study, periods with high Ps are interrupted by episodes of increased mortality. Stochastic population models featuring episodes of low Ps suggest a potential for an abrupt decline in mature tree numbers where recruitment is low. The modeling results have implications for woodland conservation, especially for relictual stands along regulated desert rivers.

  12. Early Recovery of an Eastern Sierra Nevada Riparian System After 40 Years of Stream Diversion

    Treesearch

    Julie C. Stromberg; Duncan T. Patten

    1989-01-01

    Rush Creek, which feeds Mono Lake, has been diverted below Grant Lake, totally or in part, for over 40 years. In the early 1980's, because of above normal snow packs, runoff was released into the creek. Minimum flow releases have also been established. The riparian vegetation has responded to these releases. In a few areas, riparian trees and shrubs (e.g., black...

  13. Time Series of Images to Improve Tree Species Classification

    NASA Astrophysics Data System (ADS)

    Miyoshi, G. T.; Imai, N. N.; de Moraes, M. V. A.; Tommaselli, A. M. G.; Näsi, R.

    2017-10-01

    Tree species classification provides valuable information to forest monitoring and management. The high floristic variation of the tree species appears as a challenging issue in the tree species classification because the vegetation characteristics changes according to the season. To help to monitor this complex environment, the imaging spectroscopy has been largely applied since the development of miniaturized sensors attached to Unmanned Aerial Vehicles (UAV). Considering the seasonal changes in forests and the higher spectral and spatial resolution acquired with sensors attached to UAV, we present the use of time series of images to classify four tree species. The study area is an Atlantic Forest area located in the western part of São Paulo State. Images were acquired in August 2015 and August 2016, generating three data sets of images: only with the image spectra of 2015; only with the image spectra of 2016; with the layer stacking of images from 2015 and 2016. Four tree species were classified using Spectral angle mapper (SAM), Spectral information divergence (SID) and Random Forest (RF). The results showed that SAM and SID caused an overfitting of the data whereas RF showed better results and the use of the layer stacking improved the classification achieving a kappa coefficient of 18.26 %.

  14. Sampling and modeling riparian forest structure and riparian microclimate

    Treesearch

    Bianca N.I. Eskelson; Paul D. Anderson; Hailemariam Temesgen

    2013-01-01

    Riparian areas are extremely variable and dynamic, and represent some of the most complex terrestrial ecosystems in the world. The high variability within and among riparian areas poses challenges in developing efficient sampling and modeling approaches that accurately quantify riparian forest structure and riparian microclimate. Data from eight stream reaches that are...

  15. Influence of herbivory on regrowth of riparian shrubs following a wildland fire

    Treesearch

    Kathleen A. Dwire; Sandra E. Ryan; Laura J. Shirley; Danna Lytjen; Nick Otting; Mark K. Dixon

    2006-01-01

    Streamside vegetation frequently regenerates faster than upland vegetation following wildland fire and contributes to the recovery of riparian and stream ecosystems. Limited data are available, however, on the post-fire growth of riparian species and the influence of herbivory on regeneration. To determine post-fire regrowth of riparian vegetation, height, crown area,...

  16. Use of Non-Riparian Habitats by Least Bell's Vireos

    Treesearch

    Barbara E. Kus; Karen L. Miner

    1989-01-01

    The least Bell's vireo (Vireo bellii pusillus) is an endangered songbird inhabiting riparian woodlands in southern California. Although the species requires riparian habitats for nesting, vireos also occur in upland habitats adjacent to breeding areas. Vireos breeding at the Sweetwater River in San Diego County during 1986 and 1987 were observed...

  17. The brown-headed cowbird and its riparian-dependent hosts in New Mexico

    Treesearch

    Sara H. Schweitzer; Deborah M. Finch; David M Leslie

    1998-01-01

    Numbers of brown-headed cowbirds ( Molothrus ater) are increasing in some regions of North America, while certain populations of long-distance, neotropical migratory songbirds (NTMs) are declining. In the Southwestern United States, several species of NTMs nest only in riparian habitats. The significant decline of two species of NTMs dependent upon riparian habitat,...

  18. [Competition among dominant tree species in a natural spruce-fir forest in Changbai Mountain].

    PubMed

    Ren, Mei Mei; Yang, Hua

    2016-10-01

    Dominant tree species are the main species in different layers of mixed-species forests. Examining competitive relationships among dominant tree species is important for proper management of mixedwood forests. In this study, we established a 100 m×100 m plot of uniform condition on Jingouling Forest Farm, Wangqing County, Jilin Province. The dominant tree species of the young forest community were first determined through dominance index analysis approach and the competitive relationships among dominant tree species were then examined using tree competition index that described intra- and inter-specific competition from the above and sides of individual tree crown. The results indicated three dominant tree species in this mixed-species community were Abies nephrolepis, Picea koraiensis and Pinus koraiensis. A. nephrolepis, Picea koraiensis, Pinus koraiensis, Betula costata, Tilia amurensis, Acer tegmentosum and Betula platyphylla were the main competitors of the dominant tree species, while A. nephrolepis was the major competitor for all three dominant tree species (1412.48), followed by Picea koraiensis (439.17) and Pinus koraiensis (245.28), they all had side squeeze effect (64.9%, 65.2% and 66.0% of the total competition for the three dominant tree species, respectively). The level of side and above competition decreased with individual tree DBH (diameter at breast height); the percentage of side competition was nearly equal to that of above competition in small trees and increased with tree size, reaching nearly 100% in large canopy trees. For the three dominant tree species, the side and above competition of three dominant tree species mainly came from A. nephrolepis, Picea koraiensis, Pinus koraiensis, T. amurensis, B. costata, A. tegmentosum and B. platyphylla, and the inter-specific competition was more intense than intra-specific competition (58.4%, 87.1%, 83.7% of the total competition for the three dominant species), both of which decreased with the

  19. The relationship between species diversity and genetic structure in the rare Picea chihuahuana tree species community, Mexico.

    PubMed

    Simental-Rodríguez, Sergio Leonel; Quiñones-Pérez, Carmen Zulema; Moya, Daniel; Hernández-Tecles, Enrique; López-Sánchez, Carlos Antonio; Wehenkel, Christian

    2014-01-01

    Species diversity and genetic diversity, the most basic elements of biodiversity, have long been treated as separate topics, although populations evolve within a community context. Recent studies on community genetics and ecology have suggested that genetic diversity is not completely independent of species diversity. The Mexican Picea chihuahuana Martínez is an endemic species listed as "Endangered" on the Red List. Forty populations of Chihuahua spruce have been identified. This species is often associated with tree species of eight genera in gallery forests. This rare Picea chihuahuana tree community covers an area no more than 300 ha and has been subject of several studies involving different topics such as ecology, genetic structure and climate change. The overall aim of these studies was to obtain a dataset for developing management tools to help decision makers implement preservation and conservation strategies. However, this unique forest tree community may also represent an excellent subject for helping us to understand the interplay between ecological and evolutionary processes in determining community structure and dynamics. The AFLP technique and species composition data were used together to test the hypothesis that species diversity is related to the adaptive genetic structure of some dominant tree species (Picea chihuahuana, Pinus strobiformis, Pseudotsuga menziesii and Populus tremuloides) of the Picea chihuahuana tree community at fourteen locations. The Hill numbers were used as a diversity measure. The results revealed a significant correlation between tree species diversity and genetic structure in Populus tremuloides. Because the relationship between the two levels of diversity was found to be positive for the putative adaptive AFLP detected, genetic and species structures of the tree community were possibly simultaneously adapted to a combination of ecological or environmental factors. The present findings indicate that interactions between

  20. Tree species migration studies in the White Mountains of New Hampshire

    Treesearch

    William B. Leak; Mariko Yamasaki

    2012-01-01

    The movement of tree species in either latitude or elevation has attracted increased recent attention due to growing national/international concerns over climate change. However, studies on tree species movements began in the early 1970s in the White Mountains of New Hampshire, mostly due to ecological interests in the episodic behavior of upper-elevation tree species...

  1. Tree species and functional traits but not species richness affect interrill erosion processes in young subtropical forests

    NASA Astrophysics Data System (ADS)

    Seitz, S.; Goebes, P.; Song, Z.; Bruelheide, H.; Härdtle, W.; Kühn, P.; Li, Y.; Scholten, T.

    2016-01-01

    Soil erosion is seriously threatening ecosystem functioning in many parts of the world. In this context, it is assumed that tree species richness and functional diversity of tree communities can play a critical role in improving ecosystem services such as erosion control. An experiment with 170 micro-scale run-off plots was conducted to investigate the influence of tree species and tree species richness as well as functional traits on interrill erosion in a young forest ecosystem. An interrill erosion rate of 47.5 Mg ha-1 a-1 was calculated. This study provided evidence that different tree species affect interrill erosion differently, while tree species richness did not affect interrill erosion in young forest stands. Thus, different tree morphologies have to be considered, when assessing soil erosion under forest. High crown cover and leaf area index reduced interrill erosion in initial forest ecosystems, whereas rising tree height increased it. Even if a leaf litter cover was not present, the remaining soil surface cover by stones and biological soil crusts was the most important driver for soil erosion control. Furthermore, soil organic matter had a decreasing influence on interrill erosion. Long-term monitoring of soil erosion under closing tree canopies is necessary, and a wide range of functional tree traits should be considered in future research.

  2. Urban Tree Species Show the Same Hydraulic Response to Vapor Pressure Deficit across Varying Tree Size and Environmental Conditions

    PubMed Central

    Chen, Lixin; Zhang, Zhiqiang; Ewers, Brent E.

    2012-01-01

    Background The functional convergence of tree transpiration has rarely been tested for tree species growing under urban conditions even though it is of significance to elucidate the relationship between functional convergence and species differences of urban trees for establishing sustainable urban forests in the context of forest water relations. Methodology/Principal Findings We measured sap flux of four urban tree species including Cedrus deodara, Zelkova schneideriana, Euonymus bungeanus and Metasequoia glyptostroboides in an urban park by using thermal dissipation probes (TDP). The concurrent microclimate conditions and soil moisture content were also measured. Our objectives were to examine 1) the influence of tree species and size on transpiration, and 2) the hydraulic control of urban trees under different environmental conditions over the transpiration in response to VPD as represented by canopy conductance. The results showed that the functional convergence between tree diameter at breast height (DBH) and tree canopy transpiration amount (E c) was not reliable to predict stand transpiration and there were species differences within same DBH class. Species differed in transpiration patterns to seasonal weather progression and soil water stress as a result of varied sensitivity to water availability. Species differences were also found in their potential maximum transpiration rate and reaction to light. However, a same theoretical hydraulic relationship between G c at VPD = 1 kPa (G cref) and the G c sensitivity to VPD (−dG c/dlnVPD) across studied species as well as under contrasting soil water and R s conditions in the urban area. Conclusions/Significance We concluded that urban trees show the same hydraulic regulation over response to VPD across varying tree size and environmental conditions and thus tree transpiration could be predicted with appropriate assessment of G cref. PMID:23118904

  3. Urban tree species show the same hydraulic response to vapor pressure deficit across varying tree size and environmental conditions.

    PubMed

    Chen, Lixin; Zhang, Zhiqiang; Ewers, Brent E

    2012-01-01

    The functional convergence of tree transpiration has rarely been tested for tree species growing under urban conditions even though it is of significance to elucidate the relationship between functional convergence and species differences of urban trees for establishing sustainable urban forests in the context of forest water relations. We measured sap flux of four urban tree species including Cedrus deodara, Zelkova schneideriana, Euonymus bungeanus and Metasequoia glyptostroboides in an urban park by using thermal dissipation probes (TDP). The concurrent microclimate conditions and soil moisture content were also measured. Our objectives were to examine 1) the influence of tree species and size on transpiration, and 2) the hydraulic control of urban trees under different environmental conditions over the transpiration in response to VPD as represented by canopy conductance. The results showed that the functional convergence between tree diameter at breast height (DBH) and tree canopy transpiration amount (E(c)) was not reliable to predict stand transpiration and there were species differences within same DBH class. Species differed in transpiration patterns to seasonal weather progression and soil water stress as a result of varied sensitivity to water availability. Species differences were also found in their potential maximum transpiration rate and reaction to light. However, a same theoretical hydraulic relationship between G(c) at VPD = 1 kPa (G(cref)) and the G(c) sensitivity to VPD (-dG(c)/dlnVPD) across studied species as well as under contrasting soil water and R(s) conditions in the urban area. We concluded that urban trees show the same hydraulic regulation over response to VPD across varying tree size and environmental conditions and thus tree transpiration could be predicted with appropriate assessment of G(cref).

  4. Genetic basis of aboveground productivity in two native Populus species and their hybrids.

    PubMed

    Lojewski, Nathan R; Fischer, Dylan G; Bailey, Joseph K; Schweitzer, Jennifer A; Whitham, Thomas G; Hart, Stephen C

    2009-09-01

    Demonstration of genetic control over riparian tree productivity has major implications for responses of riparian systems to shifting environmental conditions and effects of genetics on ecosystems in general. We used field studies and common gardens, applying both molecular and quantitative techniques, to compare plot-level tree aboveground net primary productivity (ANPP(tree)) and individual tree growth rate constants in relation to plant genetic identity in two naturally occurring Populus tree species and their hybrids. In field comparisons of four cross types (Populus fremontii S. Wats., Populus angustifolia James, F(1) hybrids and backcross hybrids) across 11 natural stands, productivity was greatest for P. fremontii trees, followed by hybrids and lowest in P. angustifolia. A similar pattern was observed in four common gardens across a 290 m elevation and 100 km environmental gradient. Despite a doubling in productivity across the common gardens, the relative differences among the cross types remained constant. Using clonal replicates in a common garden, we found ANPP(tree) to be a heritable plant trait (i.e., broad-sense heritability), such that plant genetic factors explained between 38% and 82% of the variation in ANPP(tree). Furthermore, analysis of the genetic composition among individual tree genotypes using restriction fragment length polymorphism molecular markers showed that genetically similar trees also exhibited similar ANPP(tree). These findings indicate strong genetic contributions to natural variation in ANPP with important ecological implications.

  5. Restoration of riparian areas within the Megram Fire

    Treesearch

    Tom Leskiw

    2002-01-01

    A variety of treatments have been employed to restore riparian areas affected by wildland fire on the Six Rivers National Forest in northwestern California. The Megram Fire began as a series of lightning strikes on August 23,1999, eventually burning 125,040 acres. Specific treatments have included contour felling of dead trees, straw mulching, placement of straw...

  6. Mapping urban forest tree species using IKONOS imagery: preliminary results.

    PubMed

    Pu, Ruiliang

    2011-01-01

    A stepwise masking system with high-resolution IKONOS imagery was developed to identify and map urban forest tree species/groups in the City of Tampa, Florida, USA. The eight species/groups consist of sand live oak (Quercus geminata), laurel oak (Quercus laurifolia), live oak (Quercus virginiana), magnolia (Magnolia grandiflora), pine (species group), palm (species group), camphor (Cinnamomum camphora), and red maple (Acer rubrum). The system was implemented with soil-adjusted vegetation index (SAVI) threshold, textural information after running a low-pass filter, and brightness threshold of NIR band to separate tree canopies from non-vegetated areas from other vegetation types (e.g., grass/lawn) and to separate the tree canopies into sunlit and shadow areas. A maximum likelihood classifier was used to identify and map forest type and species. After IKONOS imagery was preprocessed, a total of nine spectral features were generated, including four spectral bands, three hue-intensity-saturation indices, one SAVI, and one texture image. The identified and mapped results were examined with independent ground survey data. The experimental results indicate that when classifying all the eight tree species/ groups with the high-resolution IKONOS image data, the identifying accuracy was very low and could not satisfy a practical application level, and when merging the eight species/groups into four major species/groups, the average accuracy is still low (average accuracy = 73%, overall accuracy = 86%, and κ = 0.76 with sunlit test samples). Such a low accuracy of identifying and mapping the urban tree species/groups is attributable to low spatial resolution IKONOS image data relative to tree crown size, to complex and variable background spectrum impact on crown spectra, and to shadow/shaded impact. The preliminary results imply that to improve the tree species identification accuracy and achieve a practical application level in urban area, multi-temporal (multi

  7. Region effects influence local tree species diversity.

    PubMed

    Ricklefs, Robert E; He, Fangliang

    2016-01-19

    Global patterns of biodiversity reflect both regional and local processes, but the relative importance of local ecological limits to species coexistence, as influenced by the physical environment, in contrast to regional processes including species production, dispersal, and extinction, is poorly understood. Failure to distinguish regional influences from local effects has been due, in part, to sampling limitations at small scales, environmental heterogeneity within local or regional samples, and incomplete geographic sampling of species. Here, we use a global dataset comprising 47 forest plots to demonstrate significant region effects on diversity, beyond the influence of local climate, which together explain more than 92% of the global variation in local forest tree species richness. Significant region effects imply that large-scale processes shaping the regional diversity of forest trees exert influence down to the local scale, where they interact with local processes to determine the number of coexisting species.

  8. Riparian responses to extreme climate and land-use change scenarios.

    PubMed

    Fernandes, Maria Rosário; Segurado, Pedro; Jauch, Eduardo; Ferreira, Maria Teresa

    2016-11-01

    Climate change will induce alterations in the hydrological and landscape patterns with effects on riparian ecotones. In this study we assess the combined effect of an extreme climate and land-use change scenario on riparian woody structure and how this will translate into a future risk of riparian functionality loss. The study was conducted in the Tâmega catchment of the Douro basin. Boosted Regression Trees (BRTs) were used to model two riparian landscape indicators related with the degree of connectivity (Mean Width) and complexity (Area Weighted Mean Patch Fractal Dimension). Riparian data were extracted by planimetric analysis of high spatial-resolution Word Imagery Layer (ESRI). Hydrological, climatic and land-use variables were obtained from available datasets and generated with process-based modeling using current climate data (2008-2014), while also considering the high-end RCP8.5 climate-change and "Icarus" socio-economic scenarios for the 2046-2065 time slice. Our results show that hydrological and land-use changes strongly influence future projections of riparian connectivity and complexity, albeit to diverse degrees and with differing effects. A harsh reduction in average flows may impair riparian zones while an increase in extreme rain events may benefit connectivity by promoting hydrologic dynamics with the surrounding floodplains. The expected increase in broad-leaved woodlands and mixed forests may enhance the riparian galleries by reducing the agricultural pressure on the area in the vicinity of the river. According to our results, 63% of river segments in the Tâmega basin exhibited a moderate risk of functionality loss, 16% a high risk, and 21% no risk. Weaknesses and strengths of the method are highlighted and results are discussed based on a resilience perspective with regard to riparian ecosystems. Copyright © 2016 Elsevier B.V. All rights reserved.

  9. Tree Height and DBH Growth Model Establishment of Main Tree Species in Wuling Mountain Small Watershed

    NASA Astrophysics Data System (ADS)

    Luo, Jia; Zhang, Min; Zhou, Xiaoling; Chen, Jianhua; Tian, Yuxin

    2018-01-01

    Taken 4 main tree species in the Wuling mountain small watershed as research objects, 57 typical sample plots were set up according to the stand type, site conditions and community structure. 311 goal diameter-class sample trees were selected according to diameter-class groups of different tree-height grades, and the optimal fitting models of tree height and DBH growth of main tree species were obtained by stem analysis using Richard, Logistic, Korf, Mitscherlich, Schumacher, Weibull theoretical growth equations, and the correlation coefficient of all optimal fitting models reached above 0.9. Through the evaluation and test, the optimal fitting models possessed rather good fitting precision and forecast dependability.

  10. Bat activity following restoration prescribed burning in the central Appalachian Upland and riparian habitats

    USGS Publications Warehouse

    Austin, Lauren V.; Silvis, Alexander; Ford, W. Mark; Muthersbaugh, Michael; Powers, Karen E.

    2018-01-01

    After decades of fire suppression in eastern North America, land managers now are prioritizing prescribed fire as a management tool to restore or maintain fire-adapted vegetation communities. However, in long—fire-suppressed landscapes, such as the central and southern Appalachians, it is unknown how bats will respond to prescribed fire in both riparian and upland forest habitats. To address these concerns, we conducted zero-crossing acoustic surveys of bat activity in burned, unburned, riparian, and non-riparian areas in the central Appalachians, Virginia, USA. Burn and riparian variables had model support (ΔAICc < 4) to explain activity of all bat species. Nonetheless, parameter estimates for these conditions were small and confidence intervals overlapped zero for all species, indicating effect sizes were marginal. Our results suggest that bats respond to fire differently between upland and riparian forest habitats, but overall, large landscape-level prescribed fire has a slightly positive to neutral impact on all bats species identified at our study site post—fire application.

  11. Arthropod prey for riparian associated birds in headwater forests of the Oregon Coast Range

    USGS Publications Warehouse

    Hagar, Joan C.; Li, Judith; Sobota, Janel; Jenkins, Stephanie

    2012-01-01

    Headwater riparian areas occupy a large proportion of the land base in Pacific Northwest forests, and thus are ecologically and economically important. Although a primary goal of management along small headwater streams is the protection of aquatic resources, streamside habitat also is important for many terrestrial wildlife species. However, mechanisms underlying the riparian associations of some terrestrial species have not been well studied, particularly for headwater drainages. We investigated the diets of and food availability for four bird species associated with riparian habitats in montane coastal forests of western Oregon, USA. We examined variation in the availability of arthropod prey as a function of distance from stream. Specifically, we tested the hypotheses that (1) emergent aquatic insects were a food source for insectivorous birds in headwater riparian areas, and (2) the abundances of aquatic and terrestrial arthropod prey did not differ between streamside and upland areas during the bird breeding season. We found that although adult aquatic insects were available for consumption throughout the study period, they represented a relatively small proportion of available prey abundance and biomass and were present in only 1% of the diet samples from only one of the four riparian-associated bird species. Nonetheless, arthropod prey, comprised primarily of insects of terrestrial origin, was more abundant in streamside than upland samples. We conclude that food resources for birds in headwater riparian areas are primarily associated with terrestrial vegetation, and that bird distributions along the gradient from streamside to upland may be related to variation in arthropod prey availability. Because distinct vegetation may distinguish riparian from upland habitats for riparian-associated birds and their terrestrial arthropod prey, we suggest that understory communities be considered when defining management zones for riparian habitat.

  12. Legal mechanisms for protecting riparian resource values

    USGS Publications Warehouse

    Lamb, Berton L.; Lord, Eric

    1992-01-01

    Riparian resources include the borders of rivers, lakes, ponds, and potholes. These border areas are very important for a number of reasons, including stream channel maintenance, flood control, aesthetics, erosion control, fish and wildlife habitat, recreation, and water quality maintenance. These diverse functions are not well protected by law or policy. We reviewed law and policies regarding endangered species habitat designation, land use planning, grazing management, water allocation, takings, and federal permits and licenses, along with the roles of federal, state, and local governments. We discuss the politics of implementing these policies, focusing on the difficulties in changing entrenched water and land use practices. Our review indicates a lack of direct attention to riparian ecosystem issues in almost all environmental and land use programs at every level of government. Protection of riparian resource values requires a means to integrate existing programs to focus on riparian zones.

  13. Ecophysiology of riparian cottonwood and willow before, during, and after two years of soil water removal.

    PubMed

    Hultine, K R; Bush, S E; Ehleringer, J R

    2010-03-01

    Riparian cottonwood/willow forest assemblages are highly valued in the southwestern United States for their wildlife habitat, biodiversity, and watershed protection. Yet these forests are under considerable threat from climate change impacts on water resources and land-use activities to support human enterprise. Stream diversions, groundwater pumping, and extended drought have resulted in the decline of cottonwood/willow forests along many riparian corridors in the Southwest and, in many cases, the replacement of these forests with less desirable invasive shrubs and trees. Nevertheless, ecophysiological responses of cottonwood and willow, along with associated ecohydrological feedbacks of soil water depletion, are not well understood. Ecophysiological processes of mature Fremont cottonwood and coyote willow stands were examined over four consecutive growing seasons (2004-2007) near Salt Lake City, Utah, USA. The tree stands occurred near the inlet of a reservoir that was drained in the spring of 2005 and remained empty until mid-summer of 2006, effectively removing the primary water source for most of two growing seasons. Stem sap flux density (Js) in cottonwood was highly correlated with volumetric soil moisture (theta) in the upper 60 cm and decreased sevenfold as soil moisture dropped from 12% to 7% after the reservoir was drained. Conversely, Js in willow was marginally correlated with 0 and decreased by only 25% during the same period. Opposite patterns emerged during the following growing season: willow had a lower whole-plant conductance (kt) in June and higher leaf carbon isotope ratios (delta13C) than cottonwood in August, whereas k(t) and delta13C were otherwise similar between species. Water relations in both species recovered quickly from soil water depletion, with the exception that sapwood area to stem area (As:Ast) was significantly lower in both species after the 2007 growing season compared to 2004. Results suggest that cottonwood has a greater

  14. Using American elm in mixed-species plantings to restore above- and below-ground function to degraded riparian buffers

    Treesearch

    C.C. Pinchot; D.J. Lodge; R. Minocha; T.W. Noon; V. D’Amico; C. Flower; K.M. Knight; J. Slavicek

    2017-01-01

    We recently established a study to evaluate the effects of several riparian restoration treatments on degraded streambanks located on the Finger Lakes National Forest (FLNF) in western New York. A legacy of cattle grazing has led to soil compaction, invasion by non-native invasive plant species (NNIP), as well as heavy nitrogen loading and increased bacterial levels in...

  15. Do Riparian Buffers Protect Stream Invertebrate Communities in South American Atlantic Forest Agricultural Areas?

    PubMed

    Hunt, L; Marrochi, N; Bonetto, C; Liess, M; Buss, D F; Vieira da Silva, C; Chiu, M-C; Resh, V H

    2017-12-01

    We investigated the influence and relative importance of insecticides and other agricultural stressors in determining variability in invertebrate communities in small streams in intensive soy-production regions of Brazil and Paraguay. In Paraguay we sampled 17 sites on tributaries of the Pirapó River in the state of Itapúa and in Brazil we sampled 18 sites on tributaries of the San Francisco River in the state of Paraná. The riparian buffer zones generally contained native Atlantic forest remnants and/or introduced tree species at various stages of growth. In Brazil the stream buffer width was negatively correlated with sediment insecticide concentrations and buffer width was found to have moderate importance in mitigating effects on some sensitive taxa such as mayflies. However, in both regions insecticides had low relative importance in explaining variability in invertebrate communities, while various habitat parameters were more important. In Brazil, the percent coverage of soft depositional sediment in streams was the most important agriculture-related explanatory variable, and the overall stream-habitat score was the most important variable in Paraguay streams. Paraguay and Brazil both have laws requiring forested riparian buffers. The ample forested riparian buffer zones typical of streams in these regions are likely to have mitigated the effects of pesticides on stream invertebrate communities. This study provides evidence that riparian buffer regulations in the Atlantic Forest region are protecting stream ecosystems from pesticides and other agricultural stressors. Further studies are needed to determine the minimum buffer widths necessary to achieve optimal protection.

  16. Remnant trees affect species composition but not structure of tropical second-growth forest.

    PubMed

    Sandor, Manette E; Chazdon, Robin L

    2014-01-01

    Remnant trees, spared from cutting when tropical forests are cleared for agriculture or grazing, act as nuclei of forest regeneration following field abandonment. Previous studies on remnant trees were primarily conducted in active pasture or old fields abandoned in the previous 2-3 years, and focused on structure and species richness of regenerating forest, but not species composition. Our study is among the first to investigate the effects of remnant trees on neighborhood forest structure, biodiversity, and species composition 20 years post-abandonment. We compared the woody vegetation around individual remnant trees to nearby plots without remnant trees in the same second-growth forests ("control plots"). Forest structure beneath remnant trees did not differ significantly from control plots. Species richness and species diversity were significantly higher around remnant trees. The species composition around remnant trees differed significantly from control plots and more closely resembled the species composition of nearby old-growth forest. The proportion of old-growth specialists and generalists around remnant trees was significantly greater than in control plots. Although previous studies show that remnant trees may initially accelerate secondary forest growth, we found no evidence that they locally affect stem density, basal area, and seedling density at later stages of regrowth. Remnant trees do, however, have a clear effect on the species diversity, composition, and ecological groups of the surrounding woody vegetation, even after 20 years of forest regeneration. To accelerate the return of diversity and old-growth forest species into regrowing forest on abandoned land, landowners should be encouraged to retain remnant trees in agricultural or pastoral fields.

  17. Explaining linkages (and lack of) between riparian vegetation biodiversity and geomorphic complexity in restored streams of northern Sweden

    NASA Astrophysics Data System (ADS)

    Polvi, Lina; Maher Hasselquist, Eliza; Nilsson, Christer

    2014-05-01

    Ecological theory suggests that species richness and habitat heterogeneity are positively correlated; therefore stream restoration often relies on increasing geomorphic complexity to promote biodiversity. However, past studies have failed to demonstrate a link between post-restoration biodiversity and geomorphic complexity. These studies have usually relied on only one metric for quantifying complexity, rather than a holistic metric for complexity that represents several aspects of the channel morphology, and have based their observations in catchments with widespread land-use impacts. We use a geomorphic complexity gradient based on five geomorphic aspects (longitudinal, cross-sectional, planform, sediment texture, and instream wood) to determine whether streams with higher levels of complexity also have greater riparian vegetation biodiversity. We also compare biodiversity values with the potential complexity of reaches based on the large-scale controls of valley and channel gradient and the presence of large glacial legacy sediment (boulders). We focus on tributary channels in boreal forests of northern Sweden, where stream modification associated with log-floating from the 1850s to the 1960s created highly simplified channels. Driven by concerns for fish, restoration began in the 1970s by returning large cobbles and boulders into the main channel from the channel edge, and evolved into 'demonstration restoration,' placing very large boulders and trees into the channel, reopening side channels, and constructing fish spawning areas. We evaluate 22 reaches along tributaries of the Vindel River in northern Sweden with four restoration statuses: channelized, restored, demonstration restored, and unimpacted. Detailed morphologic, sediment, and instream wood data allow calculation of 29 metrics of geomorphic complexity, from which a complexity gradient was identified using multivariate statistics. The percent cover of riparian vegetation was identified in 0.5 x 0.5 m

  18. Seedling growth strategies in Bauhinia species: comparing lianas and trees.

    PubMed

    Cai, Zhi-Quan; Poorter, Lourens; Cao, Kun-Fang; Bongers, Frans

    2007-10-01

    Lianas are expected to differ from trees in their growth strategies. As a result these two groups of woody species will have different spatial distributions: lianas are more common in high light environments. This study determines the differences in growth patterns, biomass allocation and leaf traits in five closely related liana and tree species of the genus Bauhinia. Seedlings of two light-demanding lianas (Bauhinia tenuiflora and B. claviflora), one shade-tolerant liana (B. aurea), and two light-demanding trees (B. purpurea and B. monandra) were grown in a shadehouse at 25% of full sunlight. A range of physiological, morphological and biomass parameters at the leaf and whole plant level were compared among these five species. The two light-demanding liana species had higher relative growth rate (RGR), allocated more biomass to leaf production [higher leaf mass fraction (LMF) and higher leaf area ratio (LAR)] and stem mass fraction (SMF), and less biomass to the roots [root mass fraction (RMF)] than the two tree species. The shade-tolerant liana had the lowest RGR of all five species, and had a higher RMF, lower SMF and similar LMF than the two light-demanding liana species. The two light-demanding lianas had lower photosynthetic rates per unit area (A(area)) and similar photosynthetic rates per unit mass (A(mass)) than the trees. Across species, RGR was positively related to SLA, but not to LAR and A(area). It is concluded that the faster growth of light-demanding lianas compared with light-demanding trees is based on morphological parameters (SLA, LMF and LAR), and cannot be attributed to higher photosynthetic rates at the leaf level. The shade-tolerant liana exhibited a slow-growth strategy, compared with the light-demanding species.

  19. Seedling Growth Strategies in Bauhinia Species: Comparing Lianas and Trees

    PubMed Central

    Cai, Zhi-Quan; Poorter, Lourens; Cao, Kun-Fang; Bongers, Frans

    2007-01-01

    Background and Aims Lianas are expected to differ from trees in their growth strategies. As a result these two groups of woody species will have different spatial distributions: lianas are more common in high light environments. This study determines the differences in growth patterns, biomass allocation and leaf traits in five closely related liana and tree species of the genus Bauhinia. Methods Seedlings of two light-demanding lianas (Bauhinia tenuiflora and B. claviflora), one shade-tolerant liana (B. aurea), and two light-demanding trees (B. purpurea and B. monandra) were grown in a shadehouse at 25 % of full sunlight. A range of physiological, morphological and biomass parameters at the leaf and whole plant level were compared among these five species. Key Results The two light-demanding liana species had higher relative growth rate (RGR), allocated more biomass to leaf production [higher leaf mass fraction (LMF) and higher leaf area ratio (LAR)] and stem mass fraction (SMF), and less biomass to the roots [root mass fraction (RMF)] than the two tree species. The shade-tolerant liana had the lowest RGR of all five species, and had a higher RMF, lower SMF and similar LMF than the two light-demanding liana species. The two light-demanding lianas had lower photosynthetic rates per unit area (Aarea) and similar photosynthetic rates per unit mass (Amass) than the trees. Across species, RGR was positively related to SLA, but not to LAR and Aarea. Conclusions It is concluded that the faster growth of light-demanding lianas compared with light-demanding trees is based on morphological parameters (SLA, LMF and LAR), and cannot be attributed to higher photosynthetic rates at the leaf level. The shade-tolerant liana exhibited a slow-growth strategy, compared with the light-demanding species. PMID:17720978

  20. Riparian swallows as integrators of landscape change in a multiuse river system: implications for aquatic-to-terrestrial transfers of contaminants.

    PubMed

    Alberts, Jeremy M; Sullivan, S Mažeika P; Kautza, A

    2013-10-01

    Recent research has highlighted the transfer of contaminants from aquatic to terrestrial ecosystems via predation of aquatic emergent insects by riparian consumers. The influence of adjacent land use and land cover (LULC) on aquatic-to-terrestrial contaminant transfer, however, has received limited attention. From 2010 to 2012, at 11 river reaches in the Scioto River basin (OH, USA), we investigated the relationships between LULC and selenium (Se) and mercury (Hg) concentrations in four species of riparian swallows. Hg concentrations in swallows were significantly higher at rural reaches than at urban reaches (t=-3.58, P<0.001, df=30), whereas Se concentrations were positively associated with adjacent land cover characterized by mature tree cover (R(2)=0.49, P=0.006). To an extent, these relationships appear to be mediated by swallow reliance on aquatic emergent insects. For example, tree swallows (Tachycineta bicolor) at urban reaches exhibited a higher proportion of aquatic prey in their diet, fed at a higher trophic level, and exhibited elevated Se levels. We also found that both Se and Hg concentrations in adult swallows were significantly higher than those observed in nestlings at both urban and rural reaches (Se: t=-2.83, P=0.033, df=3; Hg: t=-3.22, P=0.024, df=3). Collectively, our results indicate that riparian swallows integrate contaminant exposure in linked aquatic-terrestrial systems and that LULC may strongly regulate aquatic contaminant flux to terrestrial consumers. Copyright © 2013 Elsevier B.V. All rights reserved.

  1. Taxonomic and compositional differences of ground-dwelling arthropods in riparian habitats in Glen Canyon, Arizona, USA

    USGS Publications Warehouse

    Ralston, Barbara; Cobb, Neil S.; Brantley, Sandra L.; Higgins, Jacob; Yackulic, Charles B.

    2017-01-01

    The disturbance history, plant species composition, productivity, and structural complexity of a site can exert bottom-up controls on arthropod diversity, abundance, and trophic structure. Regulation alters the hydrology and disturbance regimes of rivers and affects riparian habitats by changing plant quality parameters. Fifty years of regulation along the Colorado River downstream of Glen Canyon Dam has created a no-analog, postdam “lower” riparian zone close to the water's edge that includes tamarisk (Tamarix sp.), a nonnative riparian shrub. At the same time, the predam “upper” facultative riparian zone has persisted several meters above the current flood stage. In summer 2009, we used pitfall traps within these 2 riparian zones that differ in plant composition, productivity, and disturbance frequency to test for differences in arthropod community (Hymenoptera, Arachnida, and Coleoptera) structure. Arthropod community structure differed substantially between the 2 zones. Arthropod abundance and species richness was highest in the predam upper riparian zone, even though there was a greater amount of standing plant biomass in the postdam lower riparian zone. Omnivore abundance was proportionately greater in the upper riparian zone and was associated with lower estimated productivity values. Predators and detritivores were proportionately greater in the postdam lower riparian zone. In this case, river regulation may create habitats that support species of spiders and carabid beetles, but few other species that are exclusive to this zone. The combined richness found in both zones suggests a small increase in total richness and functional diversity for the Glen Canyon reach of the Colorado River.

  2. Use of Hardwood Tree Species by Birds Nesting in Ponderosa Pine Forests

    Treesearch

    Kathryn L. Purcell; Douglas A. Drynan

    2008-01-01

    We examined the use of hardwood tree species for nesting by bird species breeding in ponderosa pine (Pinus ponderosa) forests in the Sierra National Forest, California. From 1995 through 2002, we located 668 nests of 36 bird species nesting in trees and snags on four 60-ha study sites. Two-thirds of all species nesting in trees or snags used...

  3. Accounting for Uncertainty in Gene Tree Estimation: Summary-Coalescent Species Tree Inference in a Challenging Radiation of Australian Lizards.

    PubMed

    Blom, Mozes P K; Bragg, Jason G; Potter, Sally; Moritz, Craig

    2017-05-01

    Accurate gene tree inference is an important aspect of species tree estimation in a summary-coalescent framework. Yet, in empirical studies, inferred gene trees differ in accuracy due to stochastic variation in phylogenetic signal between targeted loci. Empiricists should, therefore, examine the consistency of species tree inference, while accounting for the observed heterogeneity in gene tree resolution of phylogenomic data sets. Here, we assess the impact of gene tree estimation error on summary-coalescent species tree inference by screening ${\\sim}2000$ exonic loci based on gene tree resolution prior to phylogenetic inference. We focus on a phylogenetically challenging radiation of Australian lizards (genus Cryptoblepharus, Scincidae) and explore effects on topology and support. We identify a well-supported topology based on all loci and find that a relatively small number of high-resolution gene trees can be sufficient to converge on the same topology. Adding gene trees with decreasing resolution produced a generally consistent topology, and increased confidence for specific bipartitions that were poorly supported when using a small number of informative loci. This corroborates coalescent-based simulation studies that have highlighted the need for a large number of loci to confidently resolve challenging relationships and refutes the notion that low-resolution gene trees introduce phylogenetic noise. Further, our study also highlights the value of quantifying changes in nodal support across locus subsets of increasing size (but decreasing gene tree resolution). Such detailed analyses can reveal anomalous fluctuations in support at some nodes, suggesting the possibility of model violation. By characterizing the heterogeneity in phylogenetic signal among loci, we can account for uncertainty in gene tree estimation and assess its effect on the consistency of the species tree estimate. We suggest that the evaluation of gene tree resolution should be incorporated

  4. The hydrological vulnerability of western North American boreal tree species based on ground-based observations of tree mortality

    NASA Astrophysics Data System (ADS)

    Hember, R. A.; Kurz, W. A.; Coops, N. C.

    2017-12-01

    Several studies indicate that climate change has increased rates of tree mortality, adversely affecting timber supply and carbon storage in western North American boreal forests. Statistical models of tree mortality can play a complimentary role in detecting and diagnosing forest change. Yet, such models struggle to address real-world complexity, including expectations that hydrological vulnerability arises from both drought stress and excess-water stress, and that these effects vary by species, tree size, and competitive status. Here, we describe models that predict annual probability of tree mortality (Pm) of common boreal tree species based on tree height (H), biomass of larger trees (BLT), soil water content (W), reference evapotranspiration (E), and two-way interactions. We show that interactions among H and hydrological variables are consistently significant. Vulnerability to extreme droughts consistently increases as H approaches maximum observed values of each species, while some species additionally show increasing vulnerability at low H. Some species additionally show increasing vulnerability to low W under high BLT, or increasing drought vulnerability under low BLT. These results suggest that vulnerability of trees to increasingly severe droughts depends on the hydraulic efficiency, competitive status, and microclimate of individual trees. Static simulations of Pm across a 1-km grid (i.e., with time-independent inputs of H, BLT, and species composition) indicate complex spatial patterns in the time trends during 1965-2014 and a mean change in Pm of 42 %. Lastly, we discuss how the size-dependence of hydrological vulnerability, in concert with increasingly severe drought events, may shape future responses of stand-level biomass production to continued warming and increasing carbon dioxide concentration in the region.

  5. 7 CFR 1410.9 - Conversion to trees.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 10 2010-01-01 2010-01-01 false Conversion to trees. 1410.9 Section 1410.9... Conversion to trees. An owner or operator who has entered into a CRP contract prior to November 28, 1990, may... permanent vegetative cover, from such cover to hardwood trees, (including alley cropping and riparian...

  6. 7 CFR 1410.9 - Conversion to trees.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 10 2012-01-01 2012-01-01 false Conversion to trees. 1410.9 Section 1410.9... Conversion to trees. An owner or operator who has entered into a CRP contract prior to November 28, 1990, may... permanent vegetative cover, from such cover to hardwood trees, (including alley cropping and riparian...

  7. 7 CFR 1410.9 - Conversion to trees.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 10 2014-01-01 2014-01-01 false Conversion to trees. 1410.9 Section 1410.9... Conversion to trees. An owner or operator who has entered into a CRP contract prior to November 28, 1990, may... permanent vegetative cover, from such cover to hardwood trees, (including alley cropping and riparian...

  8. 7 CFR 1410.9 - Conversion to trees.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 10 2013-01-01 2013-01-01 false Conversion to trees. 1410.9 Section 1410.9... Conversion to trees. An owner or operator who has entered into a CRP contract prior to November 28, 1990, may... permanent vegetative cover, from such cover to hardwood trees, (including alley cropping and riparian...

  9. Remnant Trees Affect Species Composition but Not Structure of Tropical Second-Growth Forest

    PubMed Central

    Sandor, Manette E.; Chazdon, Robin L.

    2014-01-01

    Remnant trees, spared from cutting when tropical forests are cleared for agriculture or grazing, act as nuclei of forest regeneration following field abandonment. Previous studies on remnant trees were primarily conducted in active pasture or old fields abandoned in the previous 2–3 years, and focused on structure and species richness of regenerating forest, but not species composition. Our study is among the first to investigate the effects of remnant trees on neighborhood forest structure, biodiversity, and species composition 20 years post-abandonment. We compared the woody vegetation around individual remnant trees to nearby plots without remnant trees in the same second-growth forests (“control plots”). Forest structure beneath remnant trees did not differ significantly from control plots. Species richness and species diversity were significantly higher around remnant trees. The species composition around remnant trees differed significantly from control plots and more closely resembled the species composition of nearby old-growth forest. The proportion of old-growth specialists and generalists around remnant trees was significantly greater than in control plots. Although previous studies show that remnant trees may initially accelerate secondary forest growth, we found no evidence that they locally affect stem density, basal area, and seedling density at later stages of regrowth. Remnant trees do, however, have a clear effect on the species diversity, composition, and ecological groups of the surrounding woody vegetation, even after 20 years of forest regeneration. To accelerate the return of diversity and old-growth forest species into regrowing forest on abandoned land, landowners should be encouraged to retain remnant trees in agricultural or pastoral fields. PMID:24454700

  10. Multilocus inference of species trees and DNA barcoding.

    PubMed

    Mallo, Diego; Posada, David

    2016-09-05

    The unprecedented amount of data resulting from next-generation sequencing has opened a new era in phylogenetic estimation. Although large datasets should, in theory, increase phylogenetic resolution, massive, multilocus datasets have uncovered a great deal of phylogenetic incongruence among different genomic regions, due both to stochastic error and to the action of different evolutionary process such as incomplete lineage sorting, gene duplication and loss and horizontal gene transfer. This incongruence violates one of the fundamental assumptions of the DNA barcoding approach, which assumes that gene history and species history are identical. In this review, we explain some of the most important challenges we will have to face to reconstruct the history of species, and the advantages and disadvantages of different strategies for the phylogenetic analysis of multilocus data. In particular, we describe the evolutionary events that can generate species tree-gene tree discordance, compare the most popular methods for species tree reconstruction, highlight the challenges we need to face when using them and discuss their potential utility in barcoding. Current barcoding methods sacrifice a great amount of statistical power by only considering one locus, and a transition to multilocus barcodes would not only improve current barcoding methods, but also facilitate an eventual transition to species-tree-based barcoding strategies, which could better accommodate scenarios where the barcode gap is too small or inexistent.This article is part of the themed issue 'From DNA barcodes to biomes'. © 2016 The Authors.

  11. Bird-habitat relationships in subalpine riparian shrublands of the Central Rocky Mountains

    Treesearch

    Deborah M. Finch

    1987-01-01

    Breeding birds were counted in 1982, 1983, and 1984 using the spot-map method on seven 8.1-ha plots In the Medicine Bow National Forest, Wyoming. At elevations of 2,280 to 3,000 m, riparian habitats were structurally simple, dominated by one or more bush willow species. Subalpine riparian avifaunas were depauperate with only four abundant species - song sparrow, white-...

  12. Stem Profile for Southern Equations for Southern Tree Species

    Treesearch

    Alexander Clark; Ray A. Souter; Bryce E. Schlaegel

    1991-01-01

    Form-class segmented-profile equations for 58 southern tree species and species groups are presented.The profile equations are based on taper data for 13,469 trees sampled in natural stands in many locations across the South.The profile equations predict diameter at any given height, height to give diameter, and volume between two heights.Equation coefficients for use...

  13. Conservation value of remnant riparian forest corridors of varying quality for amazonian birds and mammals.

    PubMed

    Lees, Alexander C; Peres, Carlos A

    2008-04-01

    Forest corridors are often considered the main instrument with which to offset the effects of habitat loss and fragmentation. Brazilian forestry legislation requires that all riparian zones on private landholdings be maintained as permanent reserves and sets fixed minimum widths of riparian forest buffers to be retained alongside rivers and perennial streams. We investigated the effects of corridor width and degradation status of 37 riparian forest sites (including 24 corridors connected to large source-forest patches, 8 unconnected forest corridors, and 5 control riparian zones embedded within continuous forest patches) on bird and mammal species richness in a hyper-fragmented forest landscape surrounding Alta Floresta, Mato Grosso, Brazil. We used point-count and track-sampling methodology, coupled with an intensive forest-quality assessment that combined satellite imagery and ground truthed data. Vertebrate use of corridors was highly species-specific, but broad trends emerged depending on species life histories and their sensitivity to disturbance. Narrow and/or highly disturbed riparian corridors retained only a depauperate vertebrate assemblage that was typical of deforested habitats, whereas wide, well-preserved corridors retained a nearly complete species assemblage. Restriction of livestock movement along riparian buffers and their exclusion from key areas alongside deforested streams would permit corridor regeneration and facilitate restoration of connectivity.

  14. Delineating forested river habitats and riparian floodplain hydrology with LiDAR

    NASA Astrophysics Data System (ADS)

    Vondrasek, Chris

    Rivers and the riparian forest corridor comprise a valuable freshwater ecosystem that has been altered by human activities including timber management, road building, and other land conversions. The habitats of river dependent species in the Pacific Northwest, in particular salmon have often been degraded by these activities. Many salmon runs have become threatened with extinction and have been Endangered Species Act listed. New conservation planning and policies have developed around protecting freshwater habitats and restoring more natural river processes. In WA State, timber landowners, officials from State and Federal agencies, Native tribes, and other stakeholders developed Forest Practice rules and codified a Habitat Conservation Plan with dual goals of providing regulatory surety for timber land owners and helping to recover the threatened salmon runs in forested watersheds. Conserving critical stream ecological functions and potential fish habitats throughout watersheds while managing and regulating timber harvest across the State requires accurate and up-to-date delineation and mapping of channels, tributaries, and off-channel wetlands. Monitoring the effectiveness of protection efforts is necessary but can also be difficult. Agency staff and resources are limited for both day-to-day implementation of Forest Practice rules and adaptive management. The goal of this research has been to develop efficient and accessible methods to delineate wetlands, side-channels, tributaries, and pools and backwaters created by large log jams in forested watersheds. It was also essential to use publicly available LiDAR data and to model these waters at ecologically meaningful flows. I tested a hydraulic model at a 2-year and 50-year flows, and a relative height above river surface model and compared them. I completed two additional remote sensing investigations to correlate channel movement and the locations of off-channel wetlands: an analysis of historical aerial imagery

  15. Why abundant tropical tree species are phylogenetically old.

    PubMed

    Wang, Shaopeng; Chen, Anping; Fang, Jingyun; Pacala, Stephen W

    2013-10-01

    Neutral models of species diversity predict patterns of abundance for communities in which all individuals are ecologically equivalent. These models were originally developed for Panamanian trees and successfully reproduce observed distributions of abundance. Neutral models also make macroevolutionary predictions that have rarely been evaluated or tested. Here we show that neutral models predict a humped or flat relationship between species age and population size. In contrast, ages and abundances of tree species in the Panamanian Canal watershed are found to be positively correlated, which falsifies the models. Speciation rates vary among phylogenetic lineages and are partially heritable from mother to daughter species. Variable speciation rates in an otherwise neutral model lead to a demographic advantage for species with low speciation rate. This demographic advantage results in a positive correlation between species age and abundance, as found in the Panamanian tropical forest community.

  16. Riparian Communities of the Sierra Nevada and their Environmental Relationships

    Treesearch

    Richard R. Harris

    1989-01-01

    Data on riparian community composition and environmental conditions were collected on over 20 streams in the Sierra Nevada as part of hydropower licensing studies. Over 1,000 samples were analyzed using two-way indicator species analysis (TWINSPAN), to determine riparian dominance types. Ordination techniques were applied to evaluate associations between environmental...

  17. Hierarchical Learning of Tree Classifiers for Large-Scale Plant Species Identification.

    PubMed

    Fan, Jianping; Zhou, Ning; Peng, Jinye; Gao, Ling

    2015-11-01

    In this paper, a hierarchical multi-task structural learning algorithm is developed to support large-scale plant species identification, where a visual tree is constructed for organizing large numbers of plant species in a coarse-to-fine fashion and determining the inter-related learning tasks automatically. For a given parent node on the visual tree, it contains a set of sibling coarse-grained categories of plant species or sibling fine-grained plant species, and a multi-task structural learning algorithm is developed to train their inter-related classifiers jointly for enhancing their discrimination power. The inter-level relationship constraint, e.g., a plant image must first be assigned to a parent node (high-level non-leaf node) correctly if it can further be assigned to the most relevant child node (low-level non-leaf node or leaf node) on the visual tree, is formally defined and leveraged to learn more discriminative tree classifiers over the visual tree. Our experimental results have demonstrated the effectiveness of our hierarchical multi-task structural learning algorithm on training more discriminative tree classifiers for large-scale plant species identification.

  18. Reducing impacts of brood parasitism by Brown-headed Cowbirds on riparian-nesting migratory songbirds

    Treesearch

    Sara H. Schweitzer; Deborah M. Finch; David M. Leslie

    1996-01-01

    Riparian habitats throughout the Southwest have been altered directly and indirectly by human activities. Many migrant songbird species specific to riparian communities during the breeding season are experiencing population declines. Conversely, the Brown-headed Cowbird (Molothrus ater) benefits from fragmentation of, and livestock grazing in and near riparian habitat...

  19. Important LiDAR metrics for discriminating forest tree species in Central Europe

    NASA Astrophysics Data System (ADS)

    Shi, Yifang; Wang, Tiejun; Skidmore, Andrew K.; Heurich, Marco

    2018-03-01

    Numerous airborne LiDAR-derived metrics have been proposed for classifying tree species. Yet an in-depth ecological and biological understanding of the significance of these metrics for tree species mapping remains largely unexplored. In this paper, we evaluated the performance of 37 frequently used LiDAR metrics derived under leaf-on and leaf-off conditions, respectively, for discriminating six different tree species in a natural forest in Germany. We firstly assessed the correlation between these metrics. Then we applied a Random Forest algorithm to classify the tree species and evaluated the importance of the LiDAR metrics. Finally, we identified the most important LiDAR metrics and tested their robustness and transferability. Our results indicated that about 60% of LiDAR metrics were highly correlated to each other (|r| > 0.7). There was no statistically significant difference in tree species mapping accuracy between the use of leaf-on and leaf-off LiDAR metrics. However, combining leaf-on and leaf-off LiDAR metrics significantly increased the overall accuracy from 58.2% (leaf-on) and 62.0% (leaf-off) to 66.5% as well as the kappa coefficient from 0.47 (leaf-on) and 0.51 (leaf-off) to 0.58. Radiometric features, especially intensity related metrics, provided more consistent and significant contributions than geometric features for tree species discrimination. Specifically, the mean intensity of first-or-single returns as well as the mean value of echo width were identified as the most robust LiDAR metrics for tree species discrimination. These results indicate that metrics derived from airborne LiDAR data, especially radiometric metrics, can aid in discriminating tree species in a mixed temperate forest, and represent candidate metrics for tree species classification and monitoring in Central Europe.

  20. Modeling the effects of tree species and incubation temperature on soil's extracellular enzyme activity in 78-year-old tree plantations

    NASA Astrophysics Data System (ADS)

    Zhou, Xiaoqi; Wang, Shen S. J.; Chen, Chengrong

    2017-12-01

    Forest plantations have been widely used as an effective measure for increasing soil carbon (C), and nitrogen (N) stocks and soil enzyme activities play a key role in soil C and N losses during decomposition of soil organic matter. However, few studies have been carried out to elucidate the mechanisms behind the differences in soil C and N cycling by different tree species in response to climate warming. Here, we measured the responses of soil's extracellular enzyme activity (EEA) to a gradient of temperatures using incubation methods in 78-year-old forest plantations with different tree species. Based on a soil enzyme kinetics model, we established a new statistical model to investigate the effects of temperature and tree species on soil EEA. In addition, we established a tree species-enzyme-C/N model to investigate how temperature and tree species influence soil C/N contents over time without considering plant C inputs. These extracellular enzymes included C acquisition enzymes (β-glucosidase, BG), N acquisition enzymes (N-acetylglucosaminidase, NAG; leucine aminopeptidase, LAP) and phosphorus acquisition enzymes (acid phosphatases). The results showed that incubation temperature and tree species significantly influenced all soil EEA and Eucalyptus had 1.01-2.86 times higher soil EEA than coniferous tree species. Modeling showed that Eucalyptus had larger soil C losses but had 0.99-2.38 times longer soil C residence time than the coniferous tree species over time. The differences in the residual soil C and N contents between Eucalyptus and coniferous tree species, as well as between slash pine (Pinus elliottii Engelm. var. elliottii) and hoop pine (Araucaria cunninghamii Ait.), increase with time. On the other hand, the modeling results help explain why exotic slash pine can grow faster, as it has 1.22-1.38 times longer residual soil N residence time for LAP, which mediate soil N cycling in the long term, than native coniferous tree species like hoop pine and

  1. Forestry best management practices relationships with aquatic and riparian fauna: A review

    USGS Publications Warehouse

    Warrington, Brooke M.; Aust, W. Michael; Barrett, Scott M.; Ford, W. Mark; Dolloff, C. Andrew; Schilling, Erik B.; Wigley, T. Bently; Bolding, M. Chad

    2017-01-01

    Forestry best management practices (BMPs) were developed to minimize water pollution from forestry operations by primarily addressing sediment and sediment transport, which is the leading source of pollution from silviculture. Implementation of water quality BMPs may also benefit riparian and aquatic wildlife, although wildlife benefits were not driving forces for BMP development. Therefore, we reviewed literature regarding potential contributions of sediment-reducing BMPs to conservation of riparian and aquatic wildlife, while realizing that BMPs also minimize thermal, nutrient, and chemical pollution. We reached five important conclusions: (1) a significant body of research confirms that forestry BMPs contribute to the protection of water quality and riparian forest structure; (2) data-specific relationships between forestry BMPs and reviewed species are limited; (3) forestry BMPs for forest road construction and maintenance, skid trails, stream crossings, and streamside management zones (SMZs) are important particularly for protection of water quality and aquatic species; (4) stream crossings should be carefully selected and installed to minimize sediment inputs and stream channel alterations; and (5) SMZs promote retention of older-age riparian habitat with benefits extending from water bodies to surrounding uplands. Overall, BMPs developed for protection of water quality should benefit a variety of riparian and aquatic species that are sensitive to changes in water quality or forest structure.

  2. Effects of increased flooding on riparian vegetation: Field experiments simulating climate change along five European lowland streams.

    PubMed

    Garssen, Annemarie G; Baattrup-Pedersen, Annette; Riis, Tenna; Raven, Bart M; Hoffman, Carl Christian; Verhoeven, Jos T A; Soons, Merel B

    2017-08-01

    In many parts of the world, the magnitude and frequency of cold-season precipitation are expected to increase in the near future. This will result in an increased magnitude and duration of winter and spring flooding by rain-fed streams and rivers. Such climate-driven increases in flooding are likely to affect riparian plant communities, but future vegetation changes are hard to predict due to current lack of data. To fill this knowledge gap, we experimentally modified the hydrology of five streams across three countries in north-western Europe during late winter/early spring over a period of 3 years. We assessed the responses in riparian plant species richness, biomass, plant-available nitrogen and phosphorus and seed deposition to increased flooding depth (+18 cm on average at the lowest positions along the riparian gradient) and prolonged flooding duration (6 weeks on average). After 3 years of increased flooding, there was an overall decline in riparian species richness, while riparian plant biomass increased. Extractable soil nitrogen and phosphorus also increased and are likely to have contributed to the increased biomass. Increased flooding resulted in the arrival of more seeds of additional species to the riparian zone, thereby potentially facilitating the shifts in riparian plant species composition we observed. The results of our concerted experimental effort demonstrate that changes in stream riparian plant communities can occur rapidly following increased winter flooding, leading to strong reductions in plant species diversity. © 2017 The Authors. Global Change Biology published by John Wiley & Sons Ltd.

  3. Mountain landscapes offer few opportunities for high-elevation tree species migration

    USGS Publications Warehouse

    Bell, David M.; Bradford, John B.; Lauenroth, William K.

    2014-01-01

    Climate change is anticipated to alter plant species distributions. Regional context, notably the spatial complexity of climatic gradients, may influence species migration potential. While high-elevation species may benefit from steep climate gradients in mountain regions, their persistence may be threatened by limited suitable habitat as land area decreases with elevation. To untangle these apparently contradictory predictions for mountainous regions, we evaluated the climatic suitability of four coniferous forest tree species of the western United States based on species distribution modeling (SDM) and examined changes in climatically suitable areas under predicted climate change. We used forest structural information relating to tree species dominance, productivity, and demography from an extensive forest inventory system to assess the strength of inferences made with a SDM approach. We found that tree species dominance, productivity, and recruitment were highest where climatic suitability (i.e., probability of species occurrence under certain climate conditions) was high, supporting the use of predicted climatic suitability in examining species risk to climate change. By predicting changes in climatic suitability over the next century, we found that climatic suitability will likely decline, both in areas currently occupied by each tree species and in nearby unoccupied areas to which species might migrate in the future. These trends were most dramatic for high elevation species. Climatic changes predicted over the next century will dramatically reduce climatically suitable areas for high-elevation tree species while a lower elevation species, Pinus ponderosa, will be well positioned to shift upslope across the region. Reductions in suitable area for high-elevation species imply that even unlimited migration would be insufficient to offset predicted habitat loss, underscoring the vulnerability of these high-elevation species to climatic changes.

  4. Species Divergence and Phylogenetic Variation of Ecophysiological Traits in Lianas and Trees

    PubMed Central

    Rios, Rodrigo S.; Salgado-Luarte, Cristian; Gianoli, Ernesto

    2014-01-01

    The climbing habit is an evolutionary key innovation in plants because it is associated with enhanced clade diversification. We tested whether patterns of species divergence and variation of three ecophysiological traits that are fundamental for plant adaptation to light environments (maximum photosynthetic rate [Amax], dark respiration rate [Rd], and specific leaf area [SLA]) are consistent with this key innovation. Using data reported from four tropical forests and three temperate forests, we compared phylogenetic distance among species as well as the evolutionary rate, phylogenetic distance and phylogenetic signal of those traits in lianas and trees. Estimates of evolutionary rates showed that Rd evolved faster in lianas, while SLA evolved faster in trees. The mean phylogenetic distance was 1.2 times greater among liana species than among tree species. Likewise, estimates of phylogenetic distance indicated that lianas were less related than by chance alone (phylogenetic evenness across 63 species), and trees were more related than expected by chance (phylogenetic clustering across 71 species). Lianas showed evenness for Rd, while trees showed phylogenetic clustering for this trait. In contrast, for SLA, lianas exhibited phylogenetic clustering and trees showed phylogenetic evenness. Lianas and trees showed patterns of ecophysiological trait variation among species that were independent of phylogenetic relatedness. We found support for the expected pattern of greater species divergence in lianas, but did not find consistent patterns regarding ecophysiological trait evolution and divergence. Rd followed the species-level pattern, i.e., greater divergence/evolution in lianas compared to trees, while the opposite occurred for SLA and no pattern was detected for Amax. Rd may have driven lianas' divergence across forest environments, and might contribute to diversification in climber clades. PMID:24914958

  5. Environmental effects on germination of Carex utriculata and Carex nebrascensis relative to riparian restoration

    Treesearch

    Kimberly L. Jones; Bruce A. Roundy; Nancy L. Shaw; Jeffrey R. Taylor

    2004-01-01

    Seasonal riparian seedbed temperatures were measured and germination of Carex utriculata and C. nebrascensis seeds was tested in relation to chilling, perigynia removal, incubation temperature, and light to help guide propagation and direct seeding of these species for riparian restoration. Diurnal temperatures of riparian seedbeds at two sites in Strawberry Valley,...

  6. Selective logging in tropical forests decreases the robustness of liana-tree interaction networks to the loss of host tree species.

    PubMed

    Magrach, Ainhoa; Senior, Rebecca A; Rogers, Andrew; Nurdin, Deddy; Benedick, Suzan; Laurance, William F; Santamaria, Luis; Edwards, David P

    2016-03-16

    Selective logging is one of the major drivers of tropical forest degradation, causing important shifts in species composition. Whether such changes modify interactions between species and the networks in which they are embedded remain fundamental questions to assess the 'health' and ecosystem functionality of logged forests. We focus on interactions between lianas and their tree hosts within primary and selectively logged forests in the biodiversity hotspot of Malaysian Borneo. We found that lianas were more abundant, had higher species richness, and different species compositions in logged than in primary forests. Logged forests showed heavier liana loads disparately affecting slow-growing tree species, which could exacerbate the loss of timber value and carbon storage already associated with logging. Moreover, simulation scenarios of host tree local species loss indicated that logging might decrease the robustness of liana-tree interaction networks if heavily infested trees (i.e. the most connected ones) were more likely to disappear. This effect is partially mitigated in the short term by the colonization of host trees by a greater diversity of liana species within logged forests, yet this might not compensate for the loss of preferred tree hosts in the long term. As a consequence, species interaction networks may show a lagged response to disturbance, which may trigger sudden collapses in species richness and ecosystem function in response to additional disturbances, representing a new type of 'extinction debt'. © 2016 The Author(s).

  7. Selective logging in tropical forests decreases the robustness of liana–tree interaction networks to the loss of host tree species

    PubMed Central

    Magrach, Ainhoa; Senior, Rebecca A.; Rogers, Andrew; Nurdin, Deddy; Benedick, Suzan; Laurance, William F.; Santamaria, Luis; Edwards, David P.

    2016-01-01

    Selective logging is one of the major drivers of tropical forest degradation, causing important shifts in species composition. Whether such changes modify interactions between species and the networks in which they are embedded remain fundamental questions to assess the ‘health’ and ecosystem functionality of logged forests. We focus on interactions between lianas and their tree hosts within primary and selectively logged forests in the biodiversity hotspot of Malaysian Borneo. We found that lianas were more abundant, had higher species richness, and different species compositions in logged than in primary forests. Logged forests showed heavier liana loads disparately affecting slow-growing tree species, which could exacerbate the loss of timber value and carbon storage already associated with logging. Moreover, simulation scenarios of host tree local species loss indicated that logging might decrease the robustness of liana–tree interaction networks if heavily infested trees (i.e. the most connected ones) were more likely to disappear. This effect is partially mitigated in the short term by the colonization of host trees by a greater diversity of liana species within logged forests, yet this might not compensate for the loss of preferred tree hosts in the long term. As a consequence, species interaction networks may show a lagged response to disturbance, which may trigger sudden collapses in species richness and ecosystem function in response to additional disturbances, representing a new type of ‘extinction debt’. PMID:26936241

  8. PoMo: An Allele Frequency-Based Approach for Species Tree Estimation

    PubMed Central

    De Maio, Nicola; Schrempf, Dominik; Kosiol, Carolin

    2015-01-01

    Incomplete lineage sorting can cause incongruencies of the overall species-level phylogenetic tree with the phylogenetic trees for individual genes or genomic segments. If these incongruencies are not accounted for, it is possible to incur several biases in species tree estimation. Here, we present a simple maximum likelihood approach that accounts for ancestral variation and incomplete lineage sorting. We use a POlymorphisms-aware phylogenetic MOdel (PoMo) that we have recently shown to efficiently estimate mutation rates and fixation biases from within and between-species variation data. We extend this model to perform efficient estimation of species trees. We test the performance of PoMo in several different scenarios of incomplete lineage sorting using simulations and compare it with existing methods both in accuracy and computational speed. In contrast to other approaches, our model does not use coalescent theory but is allele frequency based. We show that PoMo is well suited for genome-wide species tree estimation and that on such data it is more accurate than previous approaches. PMID:26209413

  9. Incorporating climate change projections into riparian restoration planning and design

    USGS Publications Warehouse

    Perry, Laura G.; Reynolds, Lindsay V.; Beechie, Timothy J.; Collins, Mathias J.; Shafroth, Patrick B.

    2015-01-01

    Climate change and associated changes in streamflow may alter riparian habitats substantially in coming decades. Riparian restoration provides opportunities to respond proactively to projected climate change effects, increase riparian ecosystem resilience to climate change, and simultaneously address effects of both climate change and other human disturbances. However, climate change may alter which restoration methods are most effective and which restoration goals can be achieved. Incorporating climate change into riparian restoration planning and design is critical to long-term restoration of desired community composition and ecosystem services. In this review, we discuss and provide examples of how climate change might be incorporated into restoration planning at the key stages of assessing the project context, establishing restoration goals and design criteria, evaluating design alternatives, and monitoring restoration outcomes. Restoration planners have access to numerous tools to predict future climate, streamflow, and riparian ecology at restoration sites. Planners can use those predictions to assess which species or ecosystem services will be most vulnerable under future conditions, and which sites will be most suitable for restoration. To accommodate future climate and streamflow change, planners may need to adjust methods for planting, invasive species control, channel and floodplain reconstruction, and water management. Given the considerable uncertainty in future climate and streamflow projections, riparian ecological responses, and effects on restoration outcomes, planners will need to consider multiple potential future scenarios, implement a variety of restoration methods, design projects with flexibility to adjust to future conditions, and plan to respond adaptively to unexpected change.

  10. Effects of species biological traits and environmental heterogeneity on simulated tree species distribution shifts under climate change.

    PubMed

    Wang, Wen J; He, Hong S; Thompson, Frank R; Spetich, Martin A; Fraser, Jacob S

    2018-09-01

    Demographic processes (fecundity, dispersal, colonization, growth, and mortality) and their interactions with environmental changes are not well represented in current climate-distribution models (e.g., niche and biophysical process models) and constitute a large uncertainty in projections of future tree species distribution shifts. We investigate how species biological traits and environmental heterogeneity affect species distribution shifts. We used a species-specific, spatially explicit forest dynamic model LANDIS PRO, which incorporates site-scale tree species demography and competition, landscape-scale dispersal and disturbances, and regional-scale abiotic controls, to simulate the distribution shifts of four representative tree species with distinct biological traits in the central hardwood forest region of United States. Our results suggested that biological traits (e.g., dispersal capacity, maturation age) were important for determining tree species distribution shifts. Environmental heterogeneity, on average, reduced shift rates by 8% compared to perfect environmental conditions. The average distribution shift rates ranged from 24 to 200myear -1 under climate change scenarios, implying that many tree species may not able to keep up with climate change because of limited dispersal capacity, long generation time, and environmental heterogeneity. We suggest that climate-distribution models should include species demographic processes (e.g., fecundity, dispersal, colonization), biological traits (e.g., dispersal capacity, maturation age), and environmental heterogeneity (e.g., habitat fragmentation) to improve future predictions of species distribution shifts in response to changing climates. Copyright © 2018 Elsevier B.V. All rights reserved.

  11. Uranium mobility across annual growth rings in three deciduous tree species

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    McHugh, Kelly C.; Widom, Elisabeth; Spitz, Henry B.

    Black walnut (Juglans nigra), slippery elm (Ulmus rubra), and white ash (Fraxinus americana) trees were evaluated as potential archives of past uranium (U) contamination. Like other metals, U mobility in annual growth rings of trees is potentially dependent on the tree species. Uranium concentrations and isotopic compositions (masses 234, 235, 236, and 238) were analyzed by thermal ionization mass spectrometry to test the efficacy of using tree rings to retroactively monitor U pollution from the FFMPC, a U purification facility operating from 1951 to 1989. This study found non-natural U (depleted U and detectable 236U) in growth rings of allmore » three tree species that pre-dated the start of operations at FFMPC and compositional trends that did not correspond with known contamination events. Therefore, the annual growth rings of these tree species cannot be used to reliably monitor the chronology of U contamination.« less

  12. A practical scientific approach to riparian vegetation rehabilitation in Australia.

    PubMed

    Webb, Ashley A; Erskine, Wayne D

    2003-08-01

    The clearance of indigenous riparian vegetation and removal of large woody debris (LWD) from streams combined with the planting of exotic plant species has resulted in widespread detrimental impacts on the fluvial geomorphology and aquatic ecology of Australian rivers. Vegetation exerts a significant influence on fluvial geomorphology by affecting resistance to flow, bank strength, sediment storage, bed stability and stream morphology and is important for aquatic ecosystem function. As the values of indigenous riparian vegetation are becoming better recognised by Australian river managers, large amounts of money and resources are being invested in the planting of indigenous riparian vegetation as part of river rehabilitation programs. This paper summarises the results of an investigation into the survival, growth and regeneration rates of a series of trial native riparian vegetation plantings on in-channel benches in the Hunter Valley of southeastern Australia. The trials were poorly designed for statistical analysis and the paper highlights a number of shortcomings in the methods used. As a result, a new approach to riparian vegetation rehabilitation is outlined that promotes the use of scientific principles and understanding. Appropriate species should be selected using a combination of remnant vegetation surveys, historical records, palynology and field trials. A number of important factors should be considered in the rehabilitation of riparian vegetation to achieve worthwhile results. These include flood disturbance, vegetation zonation, vegetation succession, substrate composition, corridor planting width, planting techniques, native plant regeneration, LWD recruitment and adaptive ecosystem management. This approach, if adopted, revised and improved by river managers, should result in greater success than has been achieved by previous riparian vegetation rehabilitation efforts in Australia.

  13. Prescribed fires as ecological surrogates for wildfires: A stream and riparian perspective

    USGS Publications Warehouse

    Arkle, R.S.; Pilliod, D.S.

    2010-01-01

    Forest managers use prescribed fire to reduce wildfire risk and to provide resource benefits, yet little information is available on whether prescribed fires can function as ecological surrogates for wildfire in fire-prone landscapes. Information on impacts and benefits of this management tool on stream and riparian ecosystems is particularly lacking. We used a beyond-BACI (Before, After, Control, Impact) design to investigate the effects of a prescribed fire on a stream ecosystem and compared these findings to similar data collected after wildfire. For 3 years after prescribed fire treatment, we found no detectable changes in periphyton, macroinvertebrates, amphibians, fish, and riparian and stream habitats compared to data collected over the same time period in four unburned reference streams. Based on changes in fuels, plant and litter cover, and tree scorching, this prescribed fire was typical of those being implemented in ponderosa pine forests throughout the western U.S. However, we found that the extent and severity of riparian vegetation burned was substantially lower after prescribed fire compared to nearby wildfires. The early-season prescribed fire did not mimic the riparian or in-stream ecological effects observed following a nearby wildfire, even in catchments with burn extents similar to the prescribed fire. Little information exists on the effects of long-term fire exclusion from riparian forests, but a "prescribed fire regime" of repeatedly burning upland forests while excluding fire in adjacent riparian forests may eliminate an important natural disturbance from riparian and stream habitats.

  14. Species divergence and phylogenetic variation of ecophysiological traits in lianas and trees.

    PubMed

    Rios, Rodrigo S; Salgado-Luarte, Cristian; Gianoli, Ernesto

    2014-01-01

    The climbing habit is an evolutionary key innovation in plants because it is associated with enhanced clade diversification. We tested whether patterns of species divergence and variation of three ecophysiological traits that are fundamental for plant adaptation to light environments (maximum photosynthetic rate [A(max)], dark respiration rate [R(d)], and specific leaf area [SLA]) are consistent with this key innovation. Using data reported from four tropical forests and three temperate forests, we compared phylogenetic distance among species as well as the evolutionary rate, phylogenetic distance and phylogenetic signal of those traits in lianas and trees. Estimates of evolutionary rates showed that R(d) evolved faster in lianas, while SLA evolved faster in trees. The mean phylogenetic distance was 1.2 times greater among liana species than among tree species. Likewise, estimates of phylogenetic distance indicated that lianas were less related than by chance alone (phylogenetic evenness across 63 species), and trees were more related than expected by chance (phylogenetic clustering across 71 species). Lianas showed evenness for R(d), while trees showed phylogenetic clustering for this trait. In contrast, for SLA, lianas exhibited phylogenetic clustering and trees showed phylogenetic evenness. Lianas and trees showed patterns of ecophysiological trait variation among species that were independent of phylogenetic relatedness. We found support for the expected pattern of greater species divergence in lianas, but did not find consistent patterns regarding ecophysiological trait evolution and divergence. R(d) followed the species-level pattern, i.e., greater divergence/evolution in lianas compared to trees, while the opposite occurred for SLA and no pattern was detected for A(max). R(d) may have driven lianas' divergence across forest environments, and might contribute to diversification in climber clades.

  15. Comparative use of riparian corridors and oases by migrating birds in southeast Arizona

    USGS Publications Warehouse

    Skagen, S.K.; Melcher, Cynthia; Howe, W.H.; Knopf, F.L.

    1998-01-01

    The relative importance of cottonwood-willow riparian corridors and isolated oases to land birds migrating across southeastern Arizona was evaluated during four spring migrations, 1989 to 1994, based on patterns of species richness, relative abundance, density, and body condition of birds. We surveyed birds in 13 study sites ranging in size and connectivity from small isolated patches to extensive riparian forest, sampled vegetation and insects, and captured birds in mistnets. The continuous band of riparian vegetation along the San Pedro River does not appear to be functioning as a corridor for many migrating species, although it may for a few, namely Yellow-breasted Chats (Icteria virens), Summer Tanagers (Piranga rubra), and Northern Rough-winged Swallows (Steldigopteryx serripennis), which account for fewer than 10% of the individuals migrating through the area. Small, isolated oases hosted more avian species than the corridor sites, and the relative abundances of most migrating birds did not differ between sites relative to size-connectivity. There were few differences in between-year variability in the relative abundances of migrating birds between corridor and oasis sites. Between-year variability decreased with overall abundance of species and was greater for species with breeding ranges that centered north of 50??N latitude. Body condition of birds did not differ relative to the size-connectivity of the capture site, but individuals of species with more northerly breeding ranges had more body fat than species that breed nearby. Peak migration densities of several bird species far exceeded breeding densities reported for the San Pedro River, suggesting that large components of these species were en route migrants. Peak densities of Yellow Warblers (Dendroica petechia) reached 48.0 birds/ha, of Wilson's Warblers (Wilsonia pusilla) 33.7 birds/ha, and of Yellow-rumped Warblers (D. coronata) 30.1 birds/ha. Riparian vegetation is limited in extent in the

  16. TimeTree2: species divergence times on the iPhone.

    PubMed

    Kumar, Sudhir; Hedges, S Blair

    2011-07-15

    Scientists, educators and the general public often need to know times of divergence between species. But they rarely can locate that information because it is buried in the scientific literature, usually in a format that is inaccessible to text search engines. We have developed a public knowledgebase that enables data-driven access to the collection of peer-reviewed publications in molecular evolution and phylogenetics that have reported estimates of time of divergence between species. Users can query the TimeTree resource by providing two names of organisms (common or scientific) that can correspond to species or groups of species. The current TimeTree web resource (TimeTree2) contains timetrees reported from molecular clock analyses in 910 published studies and 17 341 species that span the diversity of life. TimeTree2 interprets complex and hierarchical data from these studies for each user query, which can be launched using an iPhone application, in addition to the website. Published time estimates are now readily accessible to the scientific community, K-12 and college educators, and the general public, without requiring knowledge of evolutionary nomenclature. TimeTree2 is accessible from the URL http://www.timetree.org, with an iPhone app available from iTunes (http://itunes.apple.com/us/app/timetree/id372842500?mt=8) and a YouTube tutorial (http://www.youtube.com/watch?v=CxmshZQciwo).

  17. Temperate tree species show identical response in tree water deficit but different sensitivities in sap flow to summer soil drying.

    PubMed

    Brinkmann, Nadine; Eugster, Werner; Zweifel, Roman; Buchmann, Nina; Kahmen, Ansgar

    2016-12-01

    Temperate forests are expected to be particularly vulnerable to drought and soil drying because they are not adapted to such conditions and perform best in mesic environments. Here we ask (i) how sensitively four common temperate tree species (Fagus sylvatica, Picea abies, Acer pseudoplatanus and Fraxinus excelsior) respond in their water relations to summer soil drying and seek to determine (ii) if species-specific responses to summer soil drying are related to the onset of declining water status across the four species. Throughout 2012 and 2013 we determined tree water deficit (TWD) as a proxy for tree water status from recorded stem radius changes and monitored sap flow rates with sensors on 16 mature trees studied in the field at Lägeren, Switzerland. All tree species responded equally in their relative maximum TWD to the onset of declining soil moisture. This implies that the water supply of all tree species was affected by declining soil moisture and that none of the four species was able to fully maintain its water status, e.g., by access to alternative water sources in the soil. In contrast we found strong and highly species-specific responses of sap flow to declining soil moisture with the strongest decline in P. abies (92%), followed by F. sylvatica (53%) and A. pseudoplatanus (48%). F. excelsior did not significantly reduce sap flow. We hypothesize the species-specific responses in sap flow to declining soil moisture that occur despite a simultaneous increase in relative TWD in all species reflect how fast these species approach critical levels of their water status, which is most likely influenced by species-specific traits determining the hydraulic properties of the species tree. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

  18. Estimating tree species diversity in the savannah using NDVI and woody canopy cover

    NASA Astrophysics Data System (ADS)

    Madonsela, Sabelo; Cho, Moses Azong; Ramoelo, Abel; Mutanga, Onisimo; Naidoo, Laven

    2018-04-01

    Remote sensing applications in biodiversity research often rely on the establishment of relationships between spectral information from the image and tree species diversity measured in the field. Most studies have used normalized difference vegetation index (NDVI) to estimate tree species diversity on the basis that it is sensitive to primary productivity which defines spatial variation in plant diversity. The NDVI signal is influenced by photosynthetically active vegetation which, in the savannah, includes woody canopy foliage and grasses. The question is whether the relationship between NDVI and tree species diversity in the savanna depends on the woody cover percentage. This study explored the relationship between woody canopy cover (WCC) and tree species diversity in the savannah woodland of southern Africa and also investigated whether there is a significant interaction between seasonal NDVI and WCC in the factorial model when estimating tree species diversity. To fulfil our aim, we followed stratified random sampling approach and surveyed tree species in 68 plots of 90 m × 90 m across the study area. Within each plot, all trees with diameter at breast height of >10 cm were sampled and Shannon index - a common measure of species diversity which considers both species richness and abundance - was used to quantify tree species diversity. We then extracted WCC in each plot from existing fractional woody cover product produced from Synthetic Aperture Radar (SAR) data. Factorial regression model was used to determine the interaction effect between NDVI and WCC when estimating tree species diversity. Results from regression analysis showed that (i) WCC has a highly significant relationship with tree species diversity (r2 = 0.21; p < 0.01), (ii) the interaction between the NDVI and WCC is not significant, however, the factorial model significantly reduced the error of prediction (RMSE = 0.47, p < 0.05) compared to NDVI (RMSE = 0.49) or WCC (RMSE = 0.49) model during

  19. Uranium mobility across annual growth rings in three deciduous tree species.

    PubMed

    McHugh, Kelly C; Widom, Elisabeth; Spitz, Henry B; Wiles, Gregory C; Glover, Sam E

    2018-02-01

    Black walnut (Juglans nigra), slippery elm (Ulmus rubra), and white ash (Fraxinus americana) trees were evaluated as potential archives of past uranium (U) contamination. Like other metals, U mobility in annual growth rings of trees is dependent on the tree species. Uranium concentrations and isotopic compositions (masses 234, 235, 236, and 238) were analyzed by thermal ionization mass spectrometry to test the efficacy of using tree rings to retroactively monitor U pollution from the FFMPC, a U purification facility operating from 1951 to 1989. This study found non-natural U (depleted U and detectable 236 U) in growth rings of all three tree species that pre-dated the start of operations at FFMPC and compositional trends that did not correspond with known contamination events. Therefore, the annual growth rings of these tree species cannot be used to reliably monitor the chronology of U contamination. Copyright © 2017 Elsevier Ltd. All rights reserved.

  20. Determination of incoming solar radiation in major tree species in Turkey.

    PubMed

    Yilmaz, Osman Yalcin; Sevgi, Orhan; Koc, Ayhan

    2012-07-01

    Light requirements and spatial distribution of major forest tree species in Turkey hasn't been analyzed yet. Continuous surface solar radiation data, especially at mountainous-forested areas, are needed to put forward this relationship between forest tree species and solar radiation. To achieve this, GIS-based modeling of solar radiation is one of the methods used in rangelands to estimate continuous surface solar radiation. Therefore, mean monthly and annual total global solar radiation maps of whole Turkey were computed spatially using GRASS GIS software "r.sun" model under clear-sky (cloudless) conditions. 147498 pure forest stand point-based data were used in the study for calculating mean global solar radiation values of all the major forest tree species of Turkey. Beech had the lowest annual mean total global solar radiation value of 1654.87 kWh m(-2), whereas juniper had the highest value of 1928.89 kWh m(-2). The rank order of tree species according to the mean monthly and annual total global solar radiation values, using a confidence level of p < 0.05, was as follows: Beech < Spruce < Fir species < Oak species < Scotch pine < Red pine < Cedar < Juniper. The monthly and annual solar radiation values of sites and light requirements of forest trees ranked similarly.

  1. Two new Cytospora species, Cytospora vinacea sp. nov. and Cytospora viticola sp. nov., from declining vineyards in eastern North America

    USDA-ARS?s Scientific Manuscript database

    Cytospora species are ubiquitous pathogens of woody plants, causing branch dieback and wood cankers in numerous perennial hosts, including agronomic crops (e.g., Prunus), timber trees (e.g., Eucalyptus), and riparian hosts (e.g., Salix). Cytospora chrysosperma, C. cincta, and C. leucostoma have been...

  2. Riparian management in forests of the continental eastern United States

    Treesearch

    Elon S. Verry; James W. Hornbeck; C. Andrew Dolloff

    2000-01-01

    As we meditate on the management of stream riparian areas, it is clear that the input of "debris" from terrestrial plants falling into streams is one of the most significant processes occurring at the interface of terrestrial and stream ecosystems. Organic matter - leaves. twigs, branches, and whole trees - provides energy, nutrients, and structure to streams...

  3. Object-based methods for individual tree identification and tree species classification from high-spatial resolution imagery

    NASA Astrophysics Data System (ADS)

    Wang, Le

    2003-10-01

    Modern forest management poses an increasing need for detailed knowledge of forest information at different spatial scales. At the forest level, the information for tree species assemblage is desired whereas at or below the stand level, individual tree related information is preferred. Remote Sensing provides an effective tool to extract the above information at multiple spatial scales in the continuous time domain. To date, the increasing volume and readily availability of high-spatial-resolution data have lead to a much wider application of remotely sensed products. Nevertheless, to make effective use of the improving spatial resolution, conventional pixel-based classification methods are far from satisfactory. Correspondingly, developing object-based methods becomes a central challenge for researchers in the field of Remote Sensing. This thesis focuses on the development of methods for accurate individual tree identification and tree species classification. We develop a method in which individual tree crown boundaries and treetop locations are derived under a unified framework. We apply a two-stage approach with edge detection followed by marker-controlled watershed segmentation. Treetops are modeled from radiometry and geometry aspects. Specifically, treetops are assumed to be represented by local radiation maxima and to be located near the center of the tree-crown. As a result, a marker image was created from the derived treetop to guide a watershed segmentation to further differentiate overlapping trees and to produce a segmented image comprised of individual tree crowns. The image segmentation method developed achieves a promising result for a 256 x 256 CASI image. Then further effort is made to extend our methods to the multiscales which are constructed from a wavelet decomposition. A scale consistency and geometric consistency are designed to examine the gradients along the scale-space for the purpose of separating true crown boundary from unwanted

  4. Riparian vegetation structure and the hunting behavior of adult estuarine crocodiles

    PubMed Central

    Davies, Andrew B.; Goossens, Benoit; Asner, Gregory P.

    2017-01-01

    Riparian ecosystems are amongst the most biodiverse tropical habitats. They are important, and essential, ecological corridors, linking remnant forest fragments. In this study, we hypothesised that crocodile’s actively select nocturnal resting locations based on increased macaque predation potential. We examined the importance of riparian vegetation structure in the maintenance of crocodile hunting behaviours. Using airborne Light Detection and Ranging (LiDAR) and GPS telemetry on animal movement, we identified the repeated use of nocturnal resting sites by adult estuarine crocodiles (Crocodylus porosus) throughout the fragmented Lower Kinabatangan Wildlife Sanctuary in Sabah, Malaysia. Crocodile resting locations were found to resemble, in terms of habitat characteristics, the sleeping sites of long-tailed macaque; positioned in an attempt to avoid predation by terrestrial predators. We found individual crocodiles were actively selecting overhanging vegetation and that the protrusion of trees from the tree line was key to site selection by crocodiles, as well as influencing both the presence and group size of sleeping macaques. Although these findings are correlational, they have broad management implications, with the suggestion that riparian corridor maintenance and quality can have implications beyond that of terrestrial fauna. We further place our findings in the context of the wider ecosystem and the maintenance of trophic interactions, and discuss how future habitat management has the potential to mitigate human-wildlife conflict. PMID:29020111

  5. Riparian vegetation structure and the hunting behavior of adult estuarine crocodiles.

    PubMed

    Evans, Luke J; Davies, Andrew B; Goossens, Benoit; Asner, Gregory P

    2017-01-01

    Riparian ecosystems are amongst the most biodiverse tropical habitats. They are important, and essential, ecological corridors, linking remnant forest fragments. In this study, we hypothesised that crocodile's actively select nocturnal resting locations based on increased macaque predation potential. We examined the importance of riparian vegetation structure in the maintenance of crocodile hunting behaviours. Using airborne Light Detection and Ranging (LiDAR) and GPS telemetry on animal movement, we identified the repeated use of nocturnal resting sites by adult estuarine crocodiles (Crocodylus porosus) throughout the fragmented Lower Kinabatangan Wildlife Sanctuary in Sabah, Malaysia. Crocodile resting locations were found to resemble, in terms of habitat characteristics, the sleeping sites of long-tailed macaque; positioned in an attempt to avoid predation by terrestrial predators. We found individual crocodiles were actively selecting overhanging vegetation and that the protrusion of trees from the tree line was key to site selection by crocodiles, as well as influencing both the presence and group size of sleeping macaques. Although these findings are correlational, they have broad management implications, with the suggestion that riparian corridor maintenance and quality can have implications beyond that of terrestrial fauna. We further place our findings in the context of the wider ecosystem and the maintenance of trophic interactions, and discuss how future habitat management has the potential to mitigate human-wildlife conflict.

  6. Riparian Bird Population Monitoring in Utah, 1992-2001

    Treesearch

    Russell E. Norvell; Frank P. Howe; Jimmie R. Parrish

    2005-01-01

    We report statewide linear and non-linear trends in density from 1992 to 2001 for six common bird species in the riparian areas of Utah. The six species examined here represent over 24 percent of all observations in the period. Four of the six species showed linear declines (Black-headed Grosbeak [Pheucticus melanocephalus], American Goldfinch [

  7. Mapping forest tree species over large areas with partially cloudy Landsat imagery

    NASA Astrophysics Data System (ADS)

    Turlej, K.; Radeloff, V.

    2017-12-01

    Forests provide numerous services to natural systems and humankind, but which services forest provide depends greatly on their tree species composition. That makes it important to track not only changes in forest extent, something that remote sensing excels in, but also to map tree species. The main goal of our work was to map tree species with Landsat imagery, and to identify how to maximize mapping accuracy by including partially cloudy imagery. Our study area covered one Landsat footprint (26/28) in Northern Wisconsin, USA, with temperate and boreal forests. We selected this area because it contains numerous tree species and variable forest composition providing an ideal study area to test the limits of Landsat data. We quantified how species-level classification accuracy was affected by a) the number of acquisitions, b) the seasonal distribution of observations, and c) the amount of cloud contamination. We classified a single year stack of Landsat-7, and -8 images data with a decision tree algorithm to generate a map of dominant tree species at the pixel- and stand-level. We obtained three important results. First, we achieved producer's accuracies in the range 70-80% and user's accuracies in range 80-90% for the most abundant tree species in our study area. Second, classification accuracy improved with more acquisitions, when observations were available from all seasons, and is the best when images with up to 40% cloud cover are included. Finally, classifications for pure stands were 10 to 30 percentage points better than those for mixed stands. We conclude that including partially cloudy Landsat imagery allows to map forest tree species with accuracies that were previously only possible for rare years with many cloud-free observations. Our approach thus provides important information for both forest management and science.

  8. Thematic and spatial resolutions affect model-based predictions of tree species distribution.

    PubMed

    Liang, Yu; He, Hong S; Fraser, Jacob S; Wu, ZhiWei

    2013-01-01

    Subjective decisions of thematic and spatial resolutions in characterizing environmental heterogeneity may affect the characterizations of spatial pattern and the simulation of occurrence and rate of ecological processes, and in turn, model-based tree species distribution. Thus, this study quantified the importance of thematic and spatial resolutions, and their interaction in predictions of tree species distribution (quantified by species abundance). We investigated how model-predicted species abundances changed and whether tree species with different ecological traits (e.g., seed dispersal distance, competitive capacity) had different responses to varying thematic and spatial resolutions. We used the LANDIS forest landscape model to predict tree species distribution at the landscape scale and designed a series of scenarios with different thematic (different numbers of land types) and spatial resolutions combinations, and then statistically examined the differences of species abundance among these scenarios. Results showed that both thematic and spatial resolutions affected model-based predictions of species distribution, but thematic resolution had a greater effect. Species ecological traits affected the predictions. For species with moderate dispersal distance and relatively abundant seed sources, predicted abundance increased as thematic resolution increased. However, for species with long seeding distance or high shade tolerance, thematic resolution had an inverse effect on predicted abundance. When seed sources and dispersal distance were not limiting, the predicted species abundance increased with spatial resolution and vice versa. Results from this study may provide insights into the choice of thematic and spatial resolutions for model-based predictions of tree species distribution.

  9. Determinants of tree water use across a floodplain in arid, subtropical northwest Australia

    NASA Astrophysics Data System (ADS)

    Grierson, Pauline; McLean, Elizabeth; Iles, Jordan; Skrzypek, Grzegorz; Brand, Melinda; O'Donnell, Alison; Siebers, Andre; Dogramaci, Shawan

    2017-04-01

    Riparian zones of ephemeral streams in hot arid regions are subject to unpredictable and generally short-lived flood periods. However, droughts tend to be longer and more severe than floods in their ecological impact as low water availability in surficial alluvium and on the floodplain results in hydrological stress. Resolving how riparian and floodplain vegetation respond to highly variable flow regimes remains a fundamental challenge for estimating water budgets in arid regions, particularly where water tables are subject to groundwater abstraction. Here, we investigated patterns of water use by a range of tree species (Eucalyptus camaldulensis, E. victrix, Acacia citrinoviridis, A. coriacea, Hakea lorea, Atalaya hemiglauca) across a floodplain in the Pilbara region of northwest Australia and assessed vegetation responsiveness to both temporal and spatial variation in water supply. We sought to disentangle the varying contributions of soil water, groundwater and surface water to tree water use to determine the ecological implications of changes in hydrologic connectivity resulting from both seasonal water deficits and anthropogenic management. Diurnal and seasonal dynamics of water use were assessed using sapflux measurements coupled with observations of changing source availability. Source utilization was examined using water stable isotope compositions of xylem, soil, rain, surface water and groundwater. Depending on distance from the stream channel and time since last rainfall, we found that small trees were primarily accessing shallow soil water of meteoric origin while larger eucalypts accessed water deeper in the profile (either stored soil water or groundwater), especially as surface soils dried out. However, tree species were highly variable in their diurnal patterns of water use,including some evidence of nocturnal sapflux in A. coriacea adjacent to streams. Sapflux rates also varied almost four-fold among species but generally declined with increasing

  10. Hydraulic Function in Australian Tree Species during Drought-Induced Mortality

    NASA Astrophysics Data System (ADS)

    Tissue, D.; Maier, C.; Creek, D.; Choat, B.

    2016-12-01

    Drought induced tree mortality and decline are key issues facing forest ecology and management. Here, we primarily investigated the hydraulic limitations underpinning drought-induced mortality in three Australian tree species. Using field-based large rainout shelters, three angiosperm species (Casuarina cunninghamiana, Eucalyptus sideroxylon, Eucalyptus tereticornis) were subjected to two successive drought and recovery cycles, prior to a subsequent long and extreme drought to mortality; total duration of experiment was 2.5 years. Leaf gas exchange, leaf and stem hydraulics, and carbon reserves were monitored during the experiment. Trees died as a result of failure in the hydraulic transport system, primarily related to water stress induced embolism. Stomatal closure occurred prior to the induction of significant embolism in the stem xylem of all species. Nonetheless, trees suffered a rapid decline in xylem water potential and increase in embolism during the severe drought treatment. Trees died at water potentials causing greater than 90% loss of hydraulic conductivity in the stem, providing support for the theory that lethal water potential is correlated with complete loss of hydraulic function in the stem xylem of angiosperms.

  11. Lidar-based individual tree species classification using convolutional neural network

    NASA Astrophysics Data System (ADS)

    Mizoguchi, Tomohiro; Ishii, Akira; Nakamura, Hiroyuki; Inoue, Tsuyoshi; Takamatsu, Hisashi

    2017-06-01

    Terrestrial lidar is commonly used for detailed documentation in the field of forest inventory investigation. Recent improvements of point cloud processing techniques enabled efficient and precise computation of an individual tree shape parameters, such as breast-height diameter, height, and volume. However, tree species are manually specified by skilled workers to date. Previous works for automatic tree species classification mainly focused on aerial or satellite images, and few works have been reported for classification techniques using ground-based sensor data. Several candidate sensors can be considered for classification, such as RGB or multi/hyper spectral cameras. Above all candidates, we use terrestrial lidar because it can obtain high resolution point cloud in the dark forest. We selected bark texture for the classification criteria, since they clearly represent unique characteristics of each tree and do not change their appearance under seasonable variation and aged deterioration. In this paper, we propose a new method for automatic individual tree species classification based on terrestrial lidar using Convolutional Neural Network (CNN). The key component is the creation step of a depth image which well describe the characteristics of each species from a point cloud. We focus on Japanese cedar and cypress which cover the large part of domestic forest. Our experimental results demonstrate the effectiveness of our proposed method.

  12. Characterization of Cytospora isolates from wood cankers of declining grapevine in North America, with the descriptions of two new Cytospora species

    USDA-ARS?s Scientific Manuscript database

    Cytospora species are ubiquitous pathogens of woody plants, causing dieback and wood cankers in numerous perennial hosts, including agronomic crops (e.g., Prunus), timber trees (e.g., Eucalyptus), and riparian hosts (e.g., Salix). Cytospora chrysosperma, C. cincta, and C. leucostoma have been report...

  13. Transpirational water loss in invaded and restored semiarid riparian forests

    Treesearch

    Georgianne W. Moore; M. Keith Owens

    2011-01-01

    The invasive tree, Tamarix sp., was introduced to the United States in the 1800s to stabilize stream banks. The riparian ecosystem adjacent to the middle Rio Grande River in central NewMexico consists of mature cottonwood (Populus fremontii ) gallery forests with a dense Tamarix understory. We hypothesized that Populus would compensate for reduced competition by...

  14. Recent land cover history and nutrient retention in riparian wetlands

    USGS Publications Warehouse

    Hogan, D.M.; Walbridge, M.R.

    2009-01-01

    Wetland ecosystems are profoundly affected by altered nutrient and sediment loads received from anthropogenic activity in their surrounding watersheds. Our objective was to compare a gradient of agricultural and urban land cover history during the period from 1949 to 1997, with plant and soil nutrient concentrations in, and sediment deposition to, riparian wetlands in a rapidly urbanizing landscape. We observed that recent agricultural land cover was associated with increases in Nitrogen (N) and Phosphorus (P) concentrations in a native wetland plant species. Conversely, recent urban land cover appeared to alter receiving wetland environmental conditions by increasing the relative availability of P versus N, as reflected in an invasive, but not a native, plant species. In addition, increases in surface soil Fe content suggests recent inputs of terrestrial sediments associated specifically with increasing urban land cover. The observed correlation between urban land cover and riparian wetland plant tissue and surface soil nutrient concentrations and sediment deposition, suggest that urbanization specifically enhances the suitability of riparian wetland habitats for the invasive species Japanese stiltgrass [Microstegium vimenium (Trinius) A. Camus]. ?? 2009 Springer Science+Business Media, LLC.

  15. Sustainable development and use of ecosystems with non-forest trees

    USDA-ARS?s Scientific Manuscript database

    Non-forest trees are components of managed ecosystems including orchards and agroforestry systems and natural ecosystems such as savannas and riparian corridors. Each of these ecosystems includes trees but does not have a complete tree canopy or spatial extent necessary to create a true forest ecosy...

  16. TimeTree2: species divergence times on the iPhone

    PubMed Central

    Kumar, Sudhir; Hedges, S. Blair

    2011-01-01

    Summary: Scientists, educators and the general public often need to know times of divergence between species. But they rarely can locate that information because it is buried in the scientific literature, usually in a format that is inaccessible to text search engines. We have developed a public knowledgebase that enables data-driven access to the collection of peer-reviewed publications in molecular evolution and phylogenetics that have reported estimates of time of divergence between species. Users can query the TimeTree resource by providing two names of organisms (common or scientific) that can correspond to species or groups of species. The current TimeTree web resource (TimeTree2) contains timetrees reported from molecular clock analyses in 910 published studies and 17 341 species that span the diversity of life. TimeTree2 interprets complex and hierarchical data from these studies for each user query, which can be launched using an iPhone application, in addition to the website. Published time estimates are now readily accessible to the scientific community, K–12 and college educators, and the general public, without requiring knowledge of evolutionary nomenclature. Availability: TimeTree2 is accessible from the URL http://www.timetree.org, with an iPhone app available from iTunes (http://itunes.apple.com/us/app/timetree/id372842500?mt=8) and a YouTube tutorial (http://www.youtube.com/watch?v=CxmshZQciwo). Contact: sbh1@psu.edu Supplementary information: Supplementary data are available at Bioinformatics online. PMID:21622662

  17. Anchoring quartet-based phylogenetic distances and applications to species tree reconstruction.

    PubMed

    Sayyari, Erfan; Mirarab, Siavash

    2016-11-11

    Inferring species trees from gene trees using the coalescent-based summary methods has been the subject of much attention, yet new scalable and accurate methods are needed. We introduce DISTIQUE, a new statistically consistent summary method for inferring species trees from gene trees under the coalescent model. We generalize our results to arbitrary phylogenetic inference problems; we show that two arbitrarily chosen leaves, called anchors, can be used to estimate relative distances between all other pairs of leaves by inferring relevant quartet trees. This results in a family of distance-based tree inference methods, with running times ranging between quadratic to quartic in the number of leaves. We show in simulated studies that DISTIQUE has comparable accuracy to leading coalescent-based summary methods and reduced running times.

  18. River Food Web Response to Large-Scale Riparian Zone Manipulations

    PubMed Central

    Wootton, J. Timothy

    2012-01-01

    Conservation programs often focus on select species, leading to management plans based on the autecology of the focal species, but multiple ecosystem components can be affected both by the environmental factors impacting, and the management targeting, focal species. These broader effects can have indirect impacts on target species through the web of interactions within ecosystems. For example, human activity can strongly alter riparian vegetation, potentially impacting both economically-important salmonids and their associated river food web. In an Olympic Peninsula river, Washington state, USA, replicated large-scale riparian vegetation manipulations implemented with the long-term (>40 yr) goal of improving salmon habitat did not affect water temperature, nutrient limitation or habitat characteristics, but reduced canopy cover, causing reduced energy input via leaf litter, increased incident solar radiation (UV and PAR) and increased algal production compared to controls. In response, benthic algae, most insect taxa, and juvenile salmonids increased in manipulated areas. Stable isotope analysis revealed a predominant contribution of algal-derived energy to salmonid diets in manipulated reaches. The experiment demonstrates that riparian management targeting salmonids strongly affects river food webs via changes in the energy base, illustrates how species-based management strategies can have unanticipated indirect effects on the target species via the associated food web, and supports ecosystem-based management approaches for restoring depleted salmonid stocks. PMID:23284786

  19. Habitat selection by juvenile Swainson’s thrushes (Catharus ustulatus) in headwater riparian areas, northwestern Oregon, USA

    USGS Publications Warehouse

    Jenkins, Stephanie R.; Betts, Matthew G.; Huso, Manuela M.; Hagar, Joan C.

    2013-01-01

    Lower order, non-fish-bearing streams, often termed “headwater streams”, have received minimal research effort and protection priority, especially in mesic forests where distinction between riparian and upland vegetation can be subtle. Though it is generally thought that breeding bird abundance is higher in riparian zones, little is known about species distributions when birds are in their juvenile stage – a critical period in terms of population viability. Using radio telemetry, we examined factors affecting habitat selection by juvenile Swainson’s thrushes during the post-breeding period in headwater basins in the Coast Range of Oregon, USA. We tested models containing variables expected to influence the amount of food and cover (i.e., deciduous cover, coarse wood volume, and proximity to stream) as well as models containing variables that are frequently measured and manipulated in forest management (i.e., deciduous and coniferous trees separated into size classes). Juvenile Swainson’s thrushes were more likely to select locations with at least 25% cover of deciduous, mid-story vegetation and more than 2.0 m3/ha of coarse wood within 40 m of headwater streams. We conclude that despite their small and intermittent nature, headwater streams and adjacent riparian areas are selected over upland areas by Swainson’s thrush during the postfledging period in the Oregon Coast Range.

  20. Estimating tree species diversity across geographic scales

    Treesearch

    Susanne Winter; Andreas Böck; Ronald E. McRoberts

    2012-01-01

    The relationship between number of species and area observed has been described using numerous approaches and has been discussed for more than a century. The general objectives of our study were fourfold: (1) to evaluate the behaviour of species-area curves across geographic scales, (2) to determine sample sizes necessary to produce acceptably precise estimates of tree...

  1. Host heterogeneity influences the impact of a non-native disease invasion on populations of a foundation tree species

    USGS Publications Warehouse

    Jules, Erik S.; Carroll, Allyson L.; Garcia, Andrea M.; Steenbock, Christopher M.; Kauffman, Matthew J.

    2014-01-01

    Invasive pathogens are becoming increasingly important in forested ecosystems, yet they are often difficult to study because of their rapid transmission. The rate and extent of pathogen spread are thought to be partially controlled by variation in host characteristics, such as when host size and location influence susceptibility. Few host-pathogen systems, however, have been used to test this prediction. We used Port Orford cedar (Chamaecyparis lawsoniana), a foundation tree species in riparian areas of California and Oregon (USA), and the invasive oomycete Phytophthora lateralis to assess pathogen impacts and the role of host characteristics on invasion. Across three streams that had been infected for 13–18 years by P. lateralis, we mapped 2241 trees and determined whether they had been infected using dendrochronology. The infection probability of trees was governed by host size (diameter at breast height [DBH]) and geomorphic position (e.g., active channel, stream bank, floodplain, etc.) similarly across streams. For instance, only 23% of trees <20 cm DBH were infected, while 69% of trees ≥20 cm DBH were infected. Presumably, because spores of P. lateralis are transported downstream in water, they are more likely to encounter well-developed root systems of larger trees. Also because of this water-transport of spores, differences in infection probability were found across the geomorphic positions: 59% of cedar in the active channel and the stream bank (combined) were infected, while 23% of trees found on higher geomorphic types were infected. Overall, 32% of cedar had been infected across the three streams. However, 63% of the total cedar basal area had been killed, because the greatest number of trees, and the largest trees, were found in the most susceptible positions. In the active channel and stream bank, 91% of the basal area was infected, while 46% was infected across higher geomorphic positions. The invasion of Port Orford cedar populations by

  2. Phylogenetic Structure of Tree Species across Different Life Stages from Seedlings to Canopy Trees in a Subtropical Evergreen Broad-Leaved Forest.

    PubMed

    Jin, Yi; Qian, Hong; Yu, Mingjian

    2015-01-01

    Investigating patterns of phylogenetic structure across different life stages of tree species in forests is crucial to understanding forest community assembly, and investigating forest gap influence on the phylogenetic structure of forest regeneration is necessary for understanding forest community assembly. Here, we examine the phylogenetic structure of tree species across life stages from seedlings to canopy trees, as well as forest gap influence on the phylogenetic structure of forest regeneration in a forest of the subtropical region in China. We investigate changes in phylogenetic relatedness (measured as NRI) of tree species from seedlings, saplings, treelets to canopy trees; we compare the phylogenetic turnover (measured as βNRI) between canopy trees and seedlings in forest understory with that between canopy trees and seedlings in forest gaps. We found that phylogenetic relatedness generally increases from seedlings through saplings and treelets up to canopy trees, and that phylogenetic relatedness does not differ between seedlings in forest understory and those in forest gaps, but phylogenetic turnover between canopy trees and seedlings in forest understory is lower than that between canopy trees and seedlings in forest gaps. We conclude that tree species tend to be more closely related from seedling to canopy layers, and that forest gaps alter the seedling phylogenetic turnover of the studied forest. It is likely that the increasing trend of phylogenetic clustering as tree stem size increases observed in this subtropical forest is primarily driven by abiotic filtering processes, which select a set of closely related evergreen broad-leaved tree species whose regeneration has adapted to the closed canopy environments of the subtropical forest developed under the regional monsoon climate.

  3. Phylogenetic Structure of Tree Species across Different Life Stages from Seedlings to Canopy Trees in a Subtropical Evergreen Broad-Leaved Forest

    PubMed Central

    Jin, Yi; Qian, Hong; Yu, Mingjian

    2015-01-01

    Investigating patterns of phylogenetic structure across different life stages of tree species in forests is crucial to understanding forest community assembly, and investigating forest gap influence on the phylogenetic structure of forest regeneration is necessary for understanding forest community assembly. Here, we examine the phylogenetic structure of tree species across life stages from seedlings to canopy trees, as well as forest gap influence on the phylogenetic structure of forest regeneration in a forest of the subtropical region in China. We investigate changes in phylogenetic relatedness (measured as NRI) of tree species from seedlings, saplings, treelets to canopy trees; we compare the phylogenetic turnover (measured as βNRI) between canopy trees and seedlings in forest understory with that between canopy trees and seedlings in forest gaps. We found that phylogenetic relatedness generally increases from seedlings through saplings and treelets up to canopy trees, and that phylogenetic relatedness does not differ between seedlings in forest understory and those in forest gaps, but phylogenetic turnover between canopy trees and seedlings in forest understory is lower than that between canopy trees and seedlings in forest gaps. We conclude that tree species tend to be more closely related from seedling to canopy layers, and that forest gaps alter the seedling phylogenetic turnover of the studied forest. It is likely that the increasing trend of phylogenetic clustering as tree stem size increases observed in this subtropical forest is primarily driven by abiotic filtering processes, which select a set of closely related evergreen broad-leaved tree species whose regeneration has adapted to the closed canopy environments of the subtropical forest developed under the regional monsoon climate. PMID:26098916

  4. Species-environment relationships and vegetation patterns: Effects of spatial scale and tree life-stage

    USGS Publications Warehouse

    Stohlgren, T.J.; Bachand, R.R.; Onami, Y.; Binkley, Dan

    1998-01-01

    Do relationships between species and environmental gradients strengthen or weaken with tree life-stage (i.e., small seedlings, large seedlings, saplings, and mature trees)? Strengthened relationships may lead to distinct forest type boundaries, or weakening connections could lead to gradual ecotones and heterogeneous forest landscapes. We quantified the changes in forest dominance (basal area of tree species by life-stage) and environmental factors (elevation, slope, aspect, intercepted photosynthetically active radiation (PAR), summer soil moisture, and soil depth and texture) across 14 forest ecotones (n = 584, 10 m x 10 m plots) in Rocky Mountain National Park, Colorado, U.S.A. Local, ecotone-specific species-environment relationships, based on multiple regression techniques, generally strengthened from the small seedling stage (multiple R2 ranged from 0.00 to 0.26) to the tree stage (multiple R2 ranged from 0.20 to 0.61). At the landscape scale, combined canonical correspondence analysis (CCA) among species and for all tree life-stages suggested that the seedlings of most species became established in lower-elevation, drier sites than where mature trees of the same species dominated. However, conflicting evidence showed that species-environment relationships may weaken with tree life-stage. Seedlings were only found in a subset of plots (habitats) occupied by mature trees of the same species. At the landscape scale, CCA results showed that species-environment relationships weakened somewhat from the small seedling stage (86.4% of the variance explained by the first two axes) to the tree stage (76.6% of variance explained). The basal area of tree species co-occurring with Pinus contorta Doug. ex. Loud declined more gradually than P. contorta basal area declined across ecotones, resulting in less-distinct forest type boundaries. We conclude that broad, gradual ecotones and heterogeneous forest landscapes are created and maintained by: (1) sporadic establishment

  5. Thematic and Spatial Resolutions Affect Model-Based Predictions of Tree Species Distribution

    PubMed Central

    Liang, Yu; He, Hong S.; Fraser, Jacob S.; Wu, ZhiWei

    2013-01-01

    Subjective decisions of thematic and spatial resolutions in characterizing environmental heterogeneity may affect the characterizations of spatial pattern and the simulation of occurrence and rate of ecological processes, and in turn, model-based tree species distribution. Thus, this study quantified the importance of thematic and spatial resolutions, and their interaction in predictions of tree species distribution (quantified by species abundance). We investigated how model-predicted species abundances changed and whether tree species with different ecological traits (e.g., seed dispersal distance, competitive capacity) had different responses to varying thematic and spatial resolutions. We used the LANDIS forest landscape model to predict tree species distribution at the landscape scale and designed a series of scenarios with different thematic (different numbers of land types) and spatial resolutions combinations, and then statistically examined the differences of species abundance among these scenarios. Results showed that both thematic and spatial resolutions affected model-based predictions of species distribution, but thematic resolution had a greater effect. Species ecological traits affected the predictions. For species with moderate dispersal distance and relatively abundant seed sources, predicted abundance increased as thematic resolution increased. However, for species with long seeding distance or high shade tolerance, thematic resolution had an inverse effect on predicted abundance. When seed sources and dispersal distance were not limiting, the predicted species abundance increased with spatial resolution and vice versa. Results from this study may provide insights into the choice of thematic and spatial resolutions for model-based predictions of tree species distribution. PMID:23861828

  6. Invasive Acer negundo outperforms native species in non-limiting resource environments due to its higher phenotypic plasticity

    PubMed Central

    2011-01-01

    Background To identify the determinants of invasiveness, comparisons of traits of invasive and native species are commonly performed. Invasiveness is generally linked to higher values of reproductive, physiological and growth-related traits of the invasives relative to the natives in the introduced range. Phenotypic plasticity of these traits has also been cited to increase the success of invasive species but has been little studied in invasive tree species. In a greenhouse experiment, we compared ecophysiological traits between an invasive species to Europe, Acer negundo, and early- and late-successional co-occurring native species, under different light, nutrient availability and disturbance regimes. We also compared species of the same species groups in situ, in riparian forests. Results Under non-limiting resources, A. negundo seedlings showed higher growth rates than the native species. However, A. negundo displayed equivalent or lower photosynthetic capacities and nitrogen content per unit leaf area compared to the native species; these findings were observed both on the seedlings in the greenhouse experiment and on adult trees in situ. These physiological traits were mostly conservative along the different light, nutrient and disturbance environments. Overall, under non-limiting light and nutrient conditions, specific leaf area and total leaf area of A. negundo were substantially larger. The invasive species presented a higher plasticity in allocation to foliage and therefore in growth with increasing nutrient and light availability relative to the native species. Conclusions The higher level of plasticity of the invasive species in foliage allocation in response to light and nutrient availability induced a better growth in non-limiting resource environments. These results give us more elements on the invasiveness of A. negundo and suggest that such behaviour could explain the ability of A. negundo to outperform native tree species, contributes to its spread

  7. Conspecific Plant-Soil Feedbacks of Temperate Tree Species in the Southern Appalachians, USA

    PubMed Central

    Reinhart, Kurt O.; Johnson, Daniel; Clay, Keith

    2012-01-01

    Many tree species have seedling recruitment patterns suggesting that they are affected by non-competitive distance-dependent sources of mortality. We conducted an experiment, with landscape-level replication, to identify cases of negative distance-dependent effects and whether variation in these effects corresponded with tree recruitment patterns in the southern Appalachian Mountains region. Specifically, soil was collected from 14 sites and used as inocula in a 62 day growth chamber experiment determining whether tree seedling growth was less when interacting with soil from conspecific (like) than heterospecific (other) tree species. Tests were performed on six tree species. Three of the tree species had been previously described as having greater recruitment around conspecifics (i.e. facilitator species group) compared to the other half (i.e. inhibitor species group). We were then able to determine whether variation in negative distance-dependent effects corresponded with recruitment patterns in the field. Across the six species, none were negatively affected by soil inocula from conspecific relative to heterospecific sources. Most species (four of six) were unaffected by soil source. Two species (Prunus serotina and Tsuga canadensis) had enhanced growth in pots inoculated with soil from conspecific trees vs. heterospecifics. Species varied in their susceptibility to soil pathogens, but trends across all species revealed that species classified as inhibitors were not more negatively affected by conspecific than heterospecific soil inocula or more susceptible to pathogenic effects than facilitators. Although plant-soil biota interactions may be important for individual species and sites, it may be difficult to scale these interactions over space or levels of ecological organization. Generalizing the importance of plant-soil feedbacks or other factors across regional scales may be especially problematic for hyperdiverse temperate forests where interactions may be

  8. Conspecific plant-soil feedbacks of temperate tree species in the southern Appalachians, USA.

    PubMed

    Reinhart, Kurt O; Johnson, Daniel; Clay, Keith

    2012-01-01

    Many tree species have seedling recruitment patterns suggesting that they are affected by non-competitive distance-dependent sources of mortality. We conducted an experiment, with landscape-level replication, to identify cases of negative distance-dependent effects and whether variation in these effects corresponded with tree recruitment patterns in the southern Appalachian Mountains region. Specifically, soil was collected from 14 sites and used as inocula in a 62 day growth chamber experiment determining whether tree seedling growth was less when interacting with soil from conspecific (like) than heterospecific (other) tree species. Tests were performed on six tree species. Three of the tree species had been previously described as having greater recruitment around conspecifics (i.e. facilitator species group) compared to the other half (i.e. inhibitor species group). We were then able to determine whether variation in negative distance-dependent effects corresponded with recruitment patterns in the field. Across the six species, none were negatively affected by soil inocula from conspecific relative to heterospecific sources. Most species (four of six) were unaffected by soil source. Two species (Prunus serotina and Tsuga canadensis) had enhanced growth in pots inoculated with soil from conspecific trees vs. heterospecifics. Species varied in their susceptibility to soil pathogens, but trends across all species revealed that species classified as inhibitors were not more negatively affected by conspecific than heterospecific soil inocula or more susceptible to pathogenic effects than facilitators. Although plant-soil biota interactions may be important for individual species and sites, it may be difficult to scale these interactions over space or levels of ecological organization. Generalizing the importance of plant-soil feedbacks or other factors across regional scales may be especially problematic for hyperdiverse temperate forests where interactions may be

  9. Rocky Mountain Riparian Digest

    Treesearch

    Deborah M. Finch

    2008-01-01

    The Rocky Mountain Riparian Digest presents the many facets of riparian research at the station. Included are articles about protecting the riparian habitat, the social and economic values of riparian environments, watershed restoration, remote sensing tools, and getting kids interested in the science.

  10. Geography of spring landbird migration through riparian habitats in southwestern North America

    Treesearch

    Susan K. Skagen; Jeffrey F. Kelly; Charles van Riper III; Richard L. Hutto; Deborah M. Finch; David J. Krueper; Cynthia P. Melcher

    2005-01-01

    Migration stopover resources, particularly riparian habitats, are critically important to landbirds migrating across the arid southwestern region of North America. To explore the effects of species biogeography and habitat affinity on spring migration patterns, we synthesized existing bird abundance and capture data collected in riparian habitats of the borderlands...

  11. Riparian erosion vulnerability model based on environmental features.

    PubMed

    Botero-Acosta, Alejandra; Chu, Maria L; Guzman, Jorge A; Starks, Patrick J; Moriasi, Daniel N

    2017-12-01

    Riparian erosion is one of the major causes of sediment and contaminant load to streams, degradation of riparian wildlife habitats, and land loss hazards. Land and soil management practices are implemented as conservation and restoration measures to mitigate the environmental problems brought about by riparian erosion. This, however, requires the identification of vulnerable areas to soil erosion. Because of the complex interactions between the different mechanisms that govern soil erosion and the inherent uncertainties involved in quantifying these processes, assessing erosion vulnerability at the watershed scale is challenging. The main objective of this study was to develop a methodology to identify areas along the riparian zone that are susceptible to erosion. The methodology was developed by integrating the physically-based watershed model MIKE-SHE, to simulate water movement, and a habitat suitability model, MaxEnt, to quantify the probability of presences of elevation changes (i.e., erosion) across the watershed. The presences of elevation changes were estimated based on two LiDAR-based elevation datasets taken in 2009 and 2012. The changes in elevation were grouped into four categories: low (0.5 - 0.7 m), medium (0.7 - 1.0 m), high (1.0 - 1.7 m) and very high (1.7 - 5.9 m), considering each category as a studied "species". The categories' locations were then used as "species location" map in MaxEnt. The environmental features used as constraints to the presence of erosion were land cover, soil, stream power index, overland flow, lateral inflow, and discharge. The modeling framework was evaluated in the Fort Cobb Reservoir Experimental watershed in southcentral Oklahoma. Results showed that the most vulnerable areas for erosion were located at the upper riparian zones of the Cobb and Lake sub-watersheds. The main waterways of these sub-watersheds were also found to be prone to streambank erosion. Approximatively 80% of the riparian zone (streambank

  12. Leaf litter dynamics and nitrous oxide emission in a Mediterranean riparian forest: implications for soil nitrogen dynamics.

    PubMed

    Bernal, S; Butturini, A; Nin, E; Sabater, F; Sabater, S

    2003-01-01

    Mediterranean riparian zones can experience severe drought periods that lead to low soil moisture content, which dramatically affects their performance as nitrate removal systems. In the Mediterranean riparian zone of this study, we determined that N2O emission was practically nil. To understand the role of forest floor processes in nitrogen retention of a Mediterranean riparian area, we studied leaf litter dynamics of two tree species, London planetree [Platanus x acerifolia (Aiton) Willd.] and alder [Alnus glutinosa (L.) Gaertn.], for two years, along with soil nitrogen mineralization rates. Annual leaf litter fall equaled 562.6 +/- 10.1 (standard error) g dry wt. m(-2), 68% of which was planetree and 32% of which was alder. The temporal distribution of litterfall showed a two-peak annual cycle, one occurring in midsummer, the other in autumn. Planetree provided the major input of organic nitrogen to the forest floor, and the amount of planetree leaves remaining on the forest floor was equivalent to approximately four years of stock. Leaf litter decomposition was three times higher for alder (decay coefficient [k] = 1.13 yr(-1)) than for planetree (k = 0.365 yr(-1)). Mineralization rates showed a seasonal pattern, with the maximum rate in summer (1.92 mg N kg(-1) d(-1)). Although the forest floor was an important sink for nitrogen due to planetree leaf accumulation, 7.5% of this leaf litter was scoured to the streambed by wind. This loss was irrelevant for alder leaves. Due to the litter quality, the forest floor of this Mediterranean riparian forest acts as a nitrogen sink.

  13. Groundwater, Vegetation, and Atmosphere: Comparative Riparian Evapotranspiration, Restoration, and Water Salvage

    Treesearch

    J. R. Cleverly; C. N. Dahm; J. R. Thibault; D. McDonnell; J. E. Allred Coonrod

    2006-01-01

    As water shortages persist throughout the Western U.S., a great deal of money and effort is directed toward decreasing riparian water loss, thereby enabling continued water use by irrigators, industry, and municipalities. This study focuses upon long-term measurement of evapotranspiration (ET) by native and non-native riparian species along the Middle Rio Grande (MRG)...

  14. Restoration of southern Appalachian riparian forest affected by eastern hemlock mortality

    Treesearch

    Katherine Elliott; Chelcy F. Miniat; Jennifer Knoepp; Michael A. Crump; C. Rhett Jackson

    2016-01-01

    Widespread mortality of eastern hemlock (Tsuga canadensis) through hemlock woolly adelgid (HWA) infestation has altered riparian forest structure and function throughout the southern Appalachians. Eastern hemlock and Rhododendron maximum often co-occur in these riparian forests, where the latter species is highly shade tolerant, forms a dense shrub layer that strongly ...

  15. Forest tree species clssification based on airborne hyper-spectral imagery

    NASA Astrophysics Data System (ADS)

    Dian, Yuanyong; Li, Zengyuan; Pang, Yong

    2013-10-01

    Forest precision classification products were the basic data for surveying of forest resource, updating forest subplot information, logging and design of forest. However, due to the diversity of stand structure, complexity of the forest growth environment, it's difficult to discriminate forest tree species using multi-spectral image. The airborne hyperspectral images can achieve the high spatial and spectral resolution imagery of forest canopy, so it will good for tree species level classification. The aim of this paper was to test the effective of combining spatial and spectral features in airborne hyper-spectral image classification. The CASI hyper spectral image data were acquired from Liangshui natural reserves area. Firstly, we use the MNF (minimum noise fraction) transform method for to reduce the hyperspectral image dimensionality and highlighting variation. And secondly, we use the grey level co-occurrence matrix (GLCM) to extract the texture features of forest tree canopy from the hyper-spectral image, and thirdly we fused the texture and the spectral features of forest canopy to classify the trees species using support vector machine (SVM) with different kernel functions. The results showed that when using the SVM classifier, MNF and texture-based features combined with linear kernel function can achieve the best overall accuracy which was 85.92%. It was also confirm that combine the spatial and spectral information can improve the accuracy of tree species classification.

  16. Method for estimating potential tree-grade distributions for northeastern forest species

    Treesearch

    Daniel A. Yaussy; Daniel A. Yaussy

    1993-01-01

    Generalized logistic regression was used to distribute trees into four potential tree grades for 20 northeastern species groups. The potential tree grade is defined as the tree grade based on the length and amount of clear cuttings and defects only, disregarding minimum grading diameter. The algorithms described use site index and tree diameter as the predictive...

  17. [Effects of sampling plot number on tree species distribution prediction under climate change].

    PubMed

    Liang, Yu; He, Hong-Shi; Wu, Zhi-Wei; Li, Xiao-Na; Luo, Xu

    2013-05-01

    Based on the neutral landscapes under different degrees of landscape fragmentation, this paper studied the effects of sampling plot number on the prediction of tree species distribution at landscape scale under climate change. The tree species distribution was predicted by the coupled modeling approach which linked an ecosystem process model with a forest landscape model, and three contingent scenarios and one reference scenario of sampling plot numbers were assumed. The differences between the three scenarios and the reference scenario under different degrees of landscape fragmentation were tested. The results indicated that the effects of sampling plot number on the prediction of tree species distribution depended on the tree species life history attributes. For the generalist species, the prediction of their distribution at landscape scale needed more plots. Except for the extreme specialist, landscape fragmentation degree also affected the effects of sampling plot number on the prediction. With the increase of simulation period, the effects of sampling plot number on the prediction of tree species distribution at landscape scale could be changed. For generalist species, more plots are needed for the long-term simulation.

  18. Diagnostics of Tree Diseases Caused by Phytophthora austrocedri Species.

    PubMed

    Mulholland, Vincent; Elliot, Matthew; Green, Sarah

    2015-01-01

    We present methods for the detection and quantification of four Phytophthora species which are pathogenic on trees; Phytophthora ramorum, Phytophthora kernoviae, Phytophthora lateralis, and Phytophthora austrocedri. Nucleic acid extraction methods are presented for phloem tissue from trees, soil, and pure cultures on agar plates. Real-time PCR methods are presented and include primer and probe sets for each species, general advice on real-time PCR setup and data analysis. A method for sequence-based identification, useful for pure cultures, is also included.

  19. Silvics of Missouri bottomland tree species

    Treesearch

    John Kabrick; Daniel Dey

    2001-01-01

    This issue of Notes For Forest Managers provides a concise summary of important silvical characteristics of Missouri's bottomland trees. It focuses on species adaptations to or tolerances of, environmental and site conditions. It is a compilation of information from seven different references cited in the text.

  20. Dominant tree species are at risk from exaggerated drought under climate change.

    PubMed

    Fensham, Roderick J; Fraser, Josie; MacDermott, Harry J; Firn, Jenifer

    2015-10-01

    Predicting the consequences of climate change on forest systems is difficult because trees may display species-specific responses to exaggerated droughts that may not be reflected by the climatic envelope of their geographic range. Furthermore, few studies have examined the postdrought recovery potential of drought-susceptible tree species. This study develops a robust ranking of the drought susceptibility of 21 tree species based on their mortality after two droughts (1990s and 2000s) in the savanna of north-eastern Australia. Drought-induced mortality was positively related to species dominance, negatively related to the ratio of postdrought seedlings to adults and had no relationship to the magnitude of extreme drought within the species current geographic ranges. These results suggest that predicting the consequences of exaggerated drought on species' geographic ranges is difficult, but that dominant species like Eucalyptus with relatively slow rates of population recovery and dispersal are the most susceptible. The implications for savanna ecosystems are lower tree densities and basal area. © 2015 John Wiley & Sons Ltd.

  1. Convergence of tree water use within an arid-zone woodland.

    PubMed

    O'Grady, A P; Cook, P G; Eamus, D; Duguid, A; Wischusen, J D H; Fass, T; Worldege, D

    2009-07-01

    We examined spatial and temporal patterns of tree water use and aspects of hydraulic architecture in four common tree species of central Australia--Corymbia opaca, Eucalyptus victrix, E. camaldulensis and Acacia aneura--to better understand processes that constrain water use in these environments. These four widely distributed species occupy contrasting niches within arid environments including woodlands, floodplains and riparian environments. Measurements of tree water use and leaf water potential were made at two sites with contrasting water table depths during a period of high soil water availability following summer rainfall and during a period of low soil water availability following 7 months of very little rainfall during 2007. There were significant differences in specific leaf area (SLA), sapwood area to leaf area ratios and sapwood density between species. Sapwood to leaf area ratio increased in all species from April to November indicating a decline in leaf area per unit sapwood area. Despite very little rainfall in the intervening period three species, C. opaca, E. victrix and E. camaldulensis maintained high leaf water potentials and tree water use during both periods. In contrast, leaf water potential and water use in the A. aneura were significantly reduced in November compared to April. Despite contrasting morphology and water use strategies, we observed considerable convergence in water use among the four species. Wood density in particular was strongly related to SLA, sapwood area to leaf area ratios and soil to leaf conductance, with all four species converging on a common relationship. Identifying convergence in hydraulic traits can potentially provide powerful tools for scaling physiological processes in natural ecosystems.

  2. Hydrology, ecology, and management of riparian areas in the Madrean Archipelago

    Treesearch

    Daniel G. Neary; Peter F. Ffolliott; Leonard F. DeBano

    2005-01-01

    Riparian areas in the Madrean Archipelago have historically provided water necessary for people, livestock, and agricultural crops. European settlers were attracted to these areas in the 1880s, where they enjoyed shade and forage for themselves and their livestock and existed on the readily available wildlife and fish. Trees growing along stream banks were harvested...

  3. Designing mixed species tree plantations for the tropics: balancing ecological attributes of species with landholder preferences in the Philippines.

    PubMed

    Nguyen, Huong; Lamb, David; Herbohn, John; Firn, Jennifer

    2014-01-01

    A mixed species reforestation program known as the Rainforestation Farming system was undertaken in the Philippines to develop forms of farm forestry more suitable for smallholders than the simple monocultural plantations commonly used then. In this study, we describe the subsequent changes in stand structure and floristic composition of these plantations in order to learn from the experience and develop improved prescriptions for reforestation systems likely to be attractive to smallholders. We investigated stands aged from 6 to 11 years old on three successive occasions over a 6 year period. We found the number of species originally present in the plots as trees >5 cm dbh decreased from an initial total of 76 species to 65 species at the end of study period. But, at the same time, some new species reached the size class threshold and were recruited into the canopy layer. There was a substantial decline in tree density from an estimated stocking of about 5000 trees per ha at the time of planting to 1380 trees per ha at the time of the first measurement; the density declined by a further 4.9% per year. Changes in composition and stand structure were indicated by a marked shift in the Importance Value Index of species. Over six years, shade-intolerant species became less important and the native shade-tolerant species (often Dipterocarps) increased in importance. Based on how the Rainforestation Farming plantations developed in these early years, we suggest that mixed-species plantations elsewhere in the humid tropics should be around 1000 trees per ha or less, that the proportion of fast growing (and hence early maturing) trees should be about 30-40% of this initial density and that any fruit tree component should only be planted on the plantation margin where more light and space are available for crowns to develop.

  4. Designing Mixed Species Tree Plantations for the Tropics: Balancing Ecological Attributes of Species with Landholder Preferences in the Philippines

    PubMed Central

    Nguyen, Huong; Lamb, David; Herbohn, John; Firn, Jennifer

    2014-01-01

    A mixed species reforestation program known as the Rainforestation Farming system was undertaken in the Philippines to develop forms of farm forestry more suitable for smallholders than the simple monocultural plantations commonly used then. In this study, we describe the subsequent changes in stand structure and floristic composition of these plantations in order to learn from the experience and develop improved prescriptions for reforestation systems likely to be attractive to smallholders. We investigated stands aged from 6 to 11 years old on three successive occasions over a 6 year period. We found the number of species originally present in the plots as trees >5 cm dbh decreased from an initial total of 76 species to 65 species at the end of study period. But, at the same time, some new species reached the size class threshold and were recruited into the canopy layer. There was a substantial decline in tree density from an estimated stocking of about 5000 trees per ha at the time of planting to 1380 trees per ha at the time of the first measurement; the density declined by a further 4.9% per year. Changes in composition and stand structure were indicated by a marked shift in the Importance Value Index of species. Over six years, shade-intolerant species became less important and the native shade-tolerant species (often Dipterocarps) increased in importance. Based on how the Rainforestation Farming plantations developed in these early years, we suggest that mixed-species plantations elsewhere in the humid tropics should be around 1000 trees per ha or less, that the proportion of fast growing (and hence early maturing) trees should be about 30–40% of this initial density and that any fruit tree component should only be planted on the plantation margin where more light and space are available for crowns to develop. PMID:24751720

  5. Complementary models of tree species-soil relationships in old-growth temperate forests

    USGS Publications Warehouse

    Cross, Alison; Perakis, Steven S.

    2011-01-01

    Ecosystem level studies identify plant soil feed backs as important controls on soil nutrient availability,particularly for nitrogen and phosphorus. Although site and species specific studies of tree species soil relationships are relatively common,comparatively fewer studies consider multiple coexisting speciesin old-growth forests across a range of sites that vary underlying soil fertility. We characterized patterns in forest floor and mineral soil nutrients associated with four common tree species across eight undisturbed old-growth forests in Oregon, USA, and used two complementary conceptual models to assess tree species soil relationships. Plant soil feedbacks that could reinforce sitelevel differences in nutrient availability were assessed using the context dependent relationships model, where by relative species based differences in each soil nutrient divergedorconvergedas nutrient status changed across sites. Tree species soil relationships that did not reflect strong feedbacks were evaluated using a site independent relationships model, where by forest floor and surface mineral soil nutrient tools differed consistently by tree species across sites,without variation in deeper mineral soils. We found that theorganically cycled elements carbon, nitrogen, and phosphorus exhibited context-dependent differences among species in both forest floor and mineral soil, and most of ten followed adivergence model,where by species differences were greatest at high-nutrient sites. These patterns are consistent with the oryemphasizing biotic control of these elements through plant soil feedback mechanisms. Site independent species differences were strongest for pool so if the weather able cations calcium, magnesium, potassium,as well as phosphorus, in mineral soils. Site independent species differences in forest floor nutrients we reattributable too nespecies that displayed significant greater forest floor mass accumulation. Our finding confirmed that site-independent and

  6. Mature and old-growth riparian forests: structure, dynamics, and effects on Adirondack stream habitats.

    PubMed

    Keeton, William S; Kraft, Clifford E; Warren, Dana R

    2007-04-01

    Riparian forests regulate linkages between terrestrial and aquatic ecosystems, yet relationships among riparian forest development, stand structure, and stream habitats are poorly understood in many temperate deciduous forest systems. Our research has (1) described structural attributes associated with old-growth riparian forests and (2) assessed linkages between these characteristics and in-stream habitat structure. The 19 study sites were located along predominantly first- and second-order streams in northern hardwood-conifer forests in the Adirondack Mountains of New York (U.S.A.). Sites were classified as mature forest (6 sites), mature with remnant old-growth trees (3 sites), and old-growth (10 sites). Forest-structure attributes were measured over stream channels and at varying distances from each bank. In-stream habitat features such as large woody debris (LWD), pools, and boulders were measured in each stream reach. Forest structure was examined in relation to stand age using multivariate techniques, ANOVA, and linear regression. We investigated linkages between forest structure and stream characteristics using similar methods, preceded by information-theoretic modeling (AIC). Old-growth riparian forest structure is more complex than that found in mature forests and exhibits significantly greater accumulations of aboveground tree biomass, both living and dead. In-stream LWD volumes were significantly (alpha = 0.05) greater at old-growth sites (200 m3/ha) compared to mature sites (34 m3/ha) and were strongly related to the basal area of adjacent forests. In-stream large-log densities correlated strongly with debris-dam densities. AIC models that included large-log density, debris-dam density, boulder density, and bankfull width had the most support for predicting pool density. There were higher proportions of LWD-formed pools relative to boulder-formed pools at old-growth sites as compared to mature sites. Old-growth riparian forests provide in

  7. Effect of liquid nitrogen storage on seed germination of 51 tree species

    Treesearch

    Jill R. Barbour; Bernard R. Parresol

    2003-01-01

    Two liquid nitrogen storage experiments were performed on 51 tree species. In experiment 1, seeds of 9western tree species were placed in a liquid nitrogen tank for 3 time periods: 24 hours, 4 weeks, and 222 days. A corresponding control sample accompanied each treatment. For three species,Calocedrus decurrens, Pinus jefferyi, and ...

  8. National Forest Health Monitoring Program Maryland and Massachusetts Street Tree Monitoring Pilot Projects

    Treesearch

    Buckelew Cumming Anne; Daniel Twardus; William Smith

    2006-01-01

    Urban forests have many components: park trees, small woodlands, riparian buffers, street trees, and others. While some communities conduct city-wide inventories of street tree populations, there has been no comprehensive, statewide sampling to characterize the structure, health, and function of street tree populations. A statewide Street Tree Monitoring pilot study...

  9. Cicada emergence in southwestern riparian forest: Influences of wildfire and vegetation composition

    Treesearch

    D. Max Smith; Jeffrey Kelly; Deborah M. Finch

    2006-01-01

    Annually emerging cicadas are a numerically and ecologically dominant species in Southwestern riparian forests. Humans have altered disturbance regimes that structure these forests such that floods are less common and wildfires occur more frequently than was historically the case. Impacts of these changes on primary consumers such as riparian cicadas are unknown....

  10. EnviroAtlas - Austin, TX - 15m Riparian Buffer Vegetated Cover

    EPA Pesticide Factsheets

    This EnviroAtlas dataset describes the percentage of a 15-m riparian buffer that is vegetated. Vegetated cover is defined as Trees & Forest and Grass & Herbaceous. There is a potential for decreased water quality in areas where the riparian buffer is less vegetated. The displayed line represents the center of the analyzed riparian buffer. The water bodies analyzed include hydrologically connected streams, rivers, connectors, reservoirs, lakes/ponds, ice masses, washes, locks, and rapids within the EnviroAtlas community area. This dataset was produced by the US EPA to support research and online mapping activities related to EnviroAtlas. EnviroAtlas (https://www.epa.gov/enviroatlas) allows the user to interact with a web-based, easy-to-use, mapping application to view and analyze multiple ecosystem services for the contiguous United States. The dataset is available as downloadable data (https://edg.epa.gov/data/Public/ORD/EnviroAtlas) or as an EnviroAtlas map service. Additional descriptive information about each attribute in this dataset can be found in its associated EnviroAtlas Fact Sheet (https://www.epa.gov/enviroatlas/enviroatlas-fact-sheets).

  11. EnviroAtlas - Austin, TX - 15m Riparian Buffer Forest Cover

    EPA Pesticide Factsheets

    This EnviroAtlas dataset describes the percentage of a 15-m riparian buffer that is forested. Forest is defined as Trees & Forest. There is a potential for decreased water quality in areas where the riparian buffer is less forested. The displayed line represents the center of the analyzed riparian buffer. The water bodies analyzed include hydrologically connected streams, rivers, connectors, reservoirs, lakes/ponds, ice masses, washes, locks, and rapids within the EnviroAtlas community area. This dataset was produced by the US EPA to support research and online mapping activities related to EnviroAtlas. EnviroAtlas (https://www.epa.gov/enviroatlas) allows the user to interact with a web-based, easy-to-use, mapping application to view and analyze multiple ecosystem services for the contiguous United States. The dataset is available as downloadable data (https://edg.epa.gov/data/Public/ORD/EnviroAtlas) or as an EnviroAtlas map service. Additional descriptive information about each attribute in this dataset can be found in its associated EnviroAtlas Fact Sheet (https://www.epa.gov/enviroatlas/enviroatlas-fact-sheets).

  12. EnviroAtlas - Austin, TX - 51m Riparian Buffer Vegetated Cover

    EPA Pesticide Factsheets

    This EnviroAtlas dataset describes the percentage of a 51-m riparian buffer that is vegetated. Vegetated cover is defined as Trees & Forest and Grass & Herbaceous. There is a potential for decreased water quality in areas where the riparian buffer is less vegetated. The displayed line represents the center of the analyzed riparian buffer. The water bodies analyzed include hydrologically connected streams, rivers, connectors, reservoirs, lakes/ponds, ice masses, washes, locks, and rapids within the EnviroAtlas community area. This dataset was produced by the US EPA to support research and online mapping activities related to EnviroAtlas. EnviroAtlas (https://www.epa.gov/enviroatlas) allows the user to interact with a web-based, easy-to-use, mapping application to view and analyze multiple ecosystem services for the contiguous United States. The dataset is available as downloadable data (https://edg.epa.gov/data/Public/ORD/EnviroAtlas) or as an EnviroAtlas map service. Additional descriptive information about each attribute in this dataset can be found in its associated EnviroAtlas Fact Sheet (https://www.epa.gov/enviroatlas/enviroatlas-fact-sheets).

  13. EnviroAtlas - Cleveland, OH - 51m Riparian Buffer Forest Cover

    EPA Pesticide Factsheets

    This EnviroAtlas dataset describes the percentage of a 51-m riparian buffer that is forested. In this community, forest is defined as Trees & Forest and Woody Wetlands. There is a potential for decreased water quality in areas where the riparian buffer is less forested. The displayed line represents the center of the analyzed riparian buffer. The water bodies analyzed include hydrologically connected streams, rivers, connectors, reservoirs, lakes/ponds, ice masses, washes, locks, and rapids within the EnviroAtlas community area. This dataset was produced by the US EPA to support research and online mapping activities related to EnviroAtlas. EnviroAtlas (https://www.epa.gov/enviroatlas ) allows the user to interact with a web-based, easy-to-use, mapping application to view and analyze multiple ecosystem services for the contiguous United States. The dataset is available as downloadable data (https://edg.epa.gov/data/Public/ORD/EnviroAtlas) or as an EnviroAtlas map service. Additional descriptive information about each attribute in this dataset can be found in its associated EnviroAtlas Fact Sheet (https://www.epa.gov/enviroatlas/enviroatlas-fact-sheets)

  14. EnviroAtlas - Austin, TX - 51m Riparian Buffer Forest Cover

    EPA Pesticide Factsheets

    This EnviroAtlas dataset describes the percentage of a 51-m riparian buffer that is forested. Forest is defined as Trees & Forest. There is a potential for decreased water quality in areas where the riparian buffer is less forested. The displayed line represents the center of the analyzed riparian buffer. The water bodies analyzed include hydrologically connected streams, rivers, connectors, reservoirs, lakes/ponds, ice masses, washes, locks, and rapids within the EnviroAtlas community area. This dataset was produced by the US EPA to support research and online mapping activities related to EnviroAtlas. EnviroAtlas (https://www.epa.gov/enviroatlas) allows the user to interact with a web-based, easy-to-use, mapping application to view and analyze multiple ecosystem services for the contiguous United States. The dataset is available as downloadable data (https://edg.epa.gov/data/Public/ORD/EnviroAtlas) or as an EnviroAtlas map service. Additional descriptive information about each attribute in this dataset can be found in its associated EnviroAtlas Fact Sheet (https://www.epa.gov/enviroatlas/enviroatlas-fact-sheets).

  15. EnviroAtlas - Memphis, TN - 51m Riparian Buffer Forest Cover

    EPA Pesticide Factsheets

    This EnviroAtlas dataset describes the percentage of a 51-m riparian buffer that is forested. Forest is defined as Trees & Forest and Woody Wetlands. There is a potential for decreased water quality in areas where the riparian buffer is less forested. The displayed line represents the center of the analyzed riparian buffer. The water bodies analyzed include hydrologically connected streams, rivers, connectors, reservoirs, lakes/ponds, ice masses, washes, locks, and rapids within the EnviroAtlas community area. This dataset was produced by the US EPA to support research and online mapping activities related to EnviroAtlas. EnviroAtlas (https://www.epa.gov/enviroatlas) allows the user to interact with a web-based, easy-to-use, mapping application to view and analyze multiple ecosystem services for the contiguous United States. The dataset is available as downloadable data (https://edg.epa.gov/data/Public/ORD/EnviroAtlas) or as an EnviroAtlas map service. Additional descriptive information about each attribute in this dataset can be found in its associated EnviroAtlas Fact Sheet (https://www.epa.gov/enviroatlas/enviroatlas-fact-sheets).

  16. Light-dependent leaf trait variation in 43 tropical dry forest tree species.

    PubMed

    Markesteijn, Lars; Poorter, Lourens; Bongers, Frans

    2007-04-01

    Our understanding of leaf acclimation in relation to irradiance of fully grown or juvenile trees is mainly based on research involving tropical wet forest species. We studied sun-shade plasticity of 24 leaf traits of 43 tree species in a Bolivian dry deciduous forest. Sampling was confined to small trees. For each species, leaves were taken from five of the most and five of the least illuminated crowns. Trees were selected based on the percentage of the hemisphere uncovered by other crowns. We examined leaf trait variation and the relation between trait plasticity and light demand, maximum adult stature, and ontogenetic changes in crown exposure of the species. Leaf trait variation was mainly related to differences among species and to a minor extent to differences in light availability. Traits related to the palisade layer, thickness of the outer cell wall, and N(area) and P(area) had the greatest plasticity, suggesting their importance for leaf function in different light environments. Short-lived pioneers had the highest trait plasticity. Overall plasticity was modest and rarely associated with juvenile light requirements, adult stature, or ontogenetic changes in crown exposure. Dry forest tree species had a lower light-related plasticity than wet forest species, probably because wet forests cast deeper shade. In dry forests light availability may be less limiting, and low water availability may constrain leaf trait plasticity in response to irradiance.

  17. Tree species distribution in temperate forests is more influenced by soil than by climate.

    PubMed

    Walthert, Lorenz; Meier, Eliane Seraina

    2017-11-01

    Knowledge of the ecological requirements determining tree species distributions is a precondition for sustainable forest management. At present, the abiotic requirements and the relative importance of the different abiotic factors are still unclear for many temperate tree species. We therefore investigated the relative importance of climatic and edaphic factors for the abundance of 12 temperate tree species along environmental gradients. Our investigations are based on data from 1,075 forest stands across Switzerland including the cold-induced tree line of all studied species and the drought-induced range boundaries of several species. Four climatic and four edaphic predictors represented the important growth factors temperature, water supply, nutrient availability, and soil aeration. The climatic predictors were derived from the meteorological network of MeteoSwiss, and the edaphic predictors were available from soil profiles. Species cover abundances were recorded in field surveys. The explanatory power of the predictors was assessed by variation partitioning analyses with generalized linear models. For six of the 12 species, edaphic predictors were more important than climatic predictors in shaping species distribution. Over all species, abundances depended mainly on nutrient availability, followed by temperature, water supply, and soil aeration. The often co-occurring species responded similar to these growth factors. Drought turned out to be a determinant of the lower range boundary for some species. We conclude that over all 12 studied tree species, soil properties were more important than climate variables in shaping tree species distribution. The inclusion of appropriate soil variables in species distribution models allowed to better explain species' ecological niches. Moreover, our study revealed that the ecological requirements of tree species assessed in local field studies and in experiments are valid at larger scales across Switzerland.

  18. Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees.

    PubMed

    Stolzer, Maureen; Lai, Han; Xu, Minli; Sathaye, Deepa; Vernot, Benjamin; Durand, Dannie

    2012-09-15

    Gene duplication (D), transfer (T), loss (L) and incomplete lineage sorting (I) are crucial to the evolution of gene families and the emergence of novel functions. The history of these events can be inferred via comparison of gene and species trees, a process called reconciliation, yet current reconciliation algorithms model only a subset of these evolutionary processes. We present an algorithm to reconcile a binary gene tree with a nonbinary species tree under a DTLI parsimony criterion. This is the first reconciliation algorithm to capture all four evolutionary processes driving tree incongruence and the first to reconcile non-binary species trees with a transfer model. Our algorithm infers all optimal solutions and reports complete, temporally feasible event histories, giving the gene and species lineages in which each event occurred. It is fixed-parameter tractable, with polytime complexity when the maximum species outdegree is fixed. Application of our algorithms to prokaryotic and eukaryotic data show that use of an incomplete event model has substantial impact on the events inferred and resulting biological conclusions. Our algorithms have been implemented in Notung, a freely available phylogenetic reconciliation software package, available at http://www.cs.cmu.edu/~durand/Notung. mstolzer@andrew.cmu.edu.

  19. Plant Growth and Phosphorus Uptake of Three Riparian Grass Species

    USDA-ARS?s Scientific Manuscript database

    Riparian buffers can significantly reduce sediment-bound phosphorus (P) entering surface water, but control of dissolved P inputs is more challenging. Because plant roots remove P from soil solution, it follows that plant uptake will reduce dissolved P losses. We evaluated P uptake of smooth bromegr...

  20. Climate Controls on Tree Growth Across Species and Sites in Northeastern Arizona

    NASA Astrophysics Data System (ADS)

    Schwan, M. R.; Guiterman, C. H.; Anchukaitis, K. J.

    2016-12-01

    Understanding how forests will respond to ongoing climate change is important for conservation and resource management. Conifer forests in the US Southwest are predicted to be particularly at risk from increased drought and higher temperatures projected to occur in the region. Tree-ring studies shed light on how trees respond to climate, but there remains considerable uncertainty as to which climate factors are most important, and which species are most at risk. Confounding climate and environmental factors, biological differences among species, and biogeography often complicate cross-species analysis. Here we present a multi-species, multivariate analysis of tree growth response to climate variability. We analyze data from three coexisting conifer tree species at two sites near Canyon de Chelly, Arizona. We use a high-resolution PRISM gridded climate dataset to determine the growth responses across species and sites to temperature and precipitation. We identify both common and differential responses in our data and use these to infer possible risks these forest communities may face under a changing climate.

  1. Predicting abundance of 80 tree species following climate change in the Eastern United States

    Treesearch

    Louis R. Iverson; Anantha M. Prasad; Anantha M. Prasad

    1998-01-01

    Projected climate warming will potentially have profound effects on the earth?s biota, including a large redistribution of tree species. We developed models to evaluate potential shifts for 80 individual tree species in the eastern United States. First, environmental factors associated with current ranges of tree species were assessed using geographic information...

  2. Tree species diversity affects decomposition through modified micro-environmental conditions across European forests.

    PubMed

    Joly, François-Xavier; Milcu, Alexandru; Scherer-Lorenzen, Michael; Jean, Loreline-Katia; Bussotti, Filippo; Dawud, Seid Muhie; Müller, Sandra; Pollastrini, Martina; Raulund-Rasmussen, Karsten; Vesterdal, Lars; Hättenschwiler, Stephan

    2017-05-01

    Different tree species influence litter decomposition directly through species-specific litter traits, and indirectly through distinct modifications of the local decomposition environment. Whether these indirect effects on decomposition are influenced by tree species diversity is presently not clear. We addressed this question by studying the decomposition of two common substrates, cellulose paper and wood sticks, in a total of 209 forest stands of varying tree species diversity across six major forest types at the scale of Europe. Tree species richness showed a weak but positive correlation with the decomposition of cellulose but not with that of wood. Surprisingly, macroclimate had only a minor effect on cellulose decomposition and no effect on wood decomposition despite the wide range in climatic conditions among sites from Mediterranean to boreal forests. Instead, forest canopy density and stand-specific litter traits affected the decomposition of both substrates, with a particularly clear negative effect of the proportion of evergreen tree litter. Our study suggests that species richness and composition of tree canopies modify decomposition indirectly through changes in microenvironmental conditions. These canopy-induced differences in the local decomposition environment control decomposition to a greater extent than continental-scale differences in macroclimatic conditions. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

  3. Distinctive bacterial communities in the rhizoplane of four tropical tree species.

    PubMed

    Oh, Yoon Myung; Kim, Mincheol; Lee-Cruz, Larisa; Lai-Hoe, Ang; Go, Rusea; Ainuddin, N; Rahim, Raha Abdul; Shukor, Noraini; Adams, Jonathan M

    2012-11-01

    It is known that the microbial community of the rhizosphere is not only influenced by factors such as root exudates, phenology, and nutrient uptake but also by the plant species. However, studies of bacterial communities associated with tropical rainforest tree root surfaces, or rhizoplane, are lacking. Here, we analyzed the bacterial community of root surfaces of four species of native trees, Agathis borneensis, Dipterocarpus kerrii, Dyera costulata, and Gnetum gnemon, and nearby bulk soils, in a rainforest arboretum in Malaysia, using 454 pyrosequencing of the 16S rRNA gene. The rhizoplane bacterial communities for each of the four tree species sampled clustered separately from one another on an ordination, suggesting that these assemblages are linked to chemical and biological characteristics of the host or possibly to the mycorrhizal fungi present. Bacterial communities of the rhizoplane had various similarities to surrounding bulk soils. Acidobacteria, Alphaproteobacteria, and Betaproteobacteria were dominant in rhizoplane communities and in bulk soils from the same depth (0-10 cm). In contrast, the relative abundance of certain bacterial lineages on the rhizoplane was different from that in bulk soils: Bacteroidetes and Betaproteobacteria, which are known as copiotrophs, were much more abundant in the rhizoplane in comparison to bulk soil. At the genus level, Burkholderia, Acidobacterium, Dyella, and Edaphobacter were more abundant in the rhizoplane. Burkholderia, which are known as both pathogens and mutualists of plants, were especially abundant on the rhizoplane of all tree species sampled. The Burkholderia species present included known mutualists of tropical crops and also known N fixers. The host-specific character of tropical tree rhizoplane bacterial communities may have implications for understanding nutrient cycling, recruitment, and structuring of tree species diversity in tropical forests. Such understanding may prove to be useful in both

  4. Ecological and economic determinants of invasive tree species on Alabama forestland

    Treesearch

    Anwar Hussain; Changyou Sun; Xiaoping Zhou; Ian A. Munn

    2008-01-01

    The spread of invasive tree species has caused increasing harm to the environment. This study was motivated by the considerations that earlier studies generally ignored the role of economic factors related to the occurrence and abundance of invasive species, and empirical analyses of invasive trees on forestland have been inadequate. We assessed the impact of...

  5. Exploring the Taxonomy of Oaks and Related Tree Species

    ERIC Educational Resources Information Center

    McMaster, Robert T.

    2004-01-01

    A lab in Eastern North America conducted a study to determine the taxonomic relationship between deciduous trees and several species of oaks by calculating the similarity index of all species to be studied. The study enabled students to classify the different species of oaks according to their distinct characteristics.

  6. Demography of woody species in a semi-arid African savanna reserve following the re-introduction of elephants

    NASA Astrophysics Data System (ADS)

    O'Connor, Timothy G.

    2017-01-01

    The hypothesis that African elephants may cause the local extirpation of selected woody species was evaluated in a medium-sized, semi-arid reserve following their reintroduction at low density. Mortality, state-change, and regeneration of 25 tree and 17 shrub species were studied between 1997 and 2010. Annual mortality of shrub species ranged from 0.2 to 8.0%, with six species experiencing 6-8%. Eight shrub species lost more than half their adult population (range 10-94%). Annual tree mortality ranged from 0.2 to 10.5%. The two dominant dryland tree species experienced <1% annual mortality, 18 species lost more than half their tree population, and one was eliminated. Elephants accounted for >63% and stress-related agents >20% of tree deaths. The manner in which elephants induced tree death depended on species. The proportion of individuals of a species killed by pollarding or uprooting ranged from 0 to 74%, and by debarking from 0 to 100%. Complete uprooting was a common cause of death for three shrub species. Regeneration ranged from zero for six tree and one shrub species to a seedling every 7 m2 for Colophospermum mopane and 23 m2 for Dichrostachys cinerea in riparian habitat. Three shrub and eight tree species were identified as vulnerable to local extirpation owing to a combination of high mortality and poor regeneration that is likely to result in a considerably simplified system. Reintroduction of elephants into medium-sized reserves without regulation of their numbers may not be a desirable action.

  7. Higher levels of multiple ecosystem services are found in forests with more tree species

    PubMed Central

    Gamfeldt, Lars; Snäll, Tord; Bagchi, Robert; Jonsson, Micael; Gustafsson, Lena; Kjellander, Petter; Ruiz-Jaen, María C.; Fröberg, Mats; Stendahl, Johan; Philipson, Christopher D.; Mikusiński, Grzegorz; Andersson, Erik; Westerlund, Bertil; Andrén, Henrik; Moberg, Fredrik; Moen, Jon; Bengtsson, Jan

    2013-01-01

    Forests are of major importance to human society, contributing several crucial ecosystem services. Biodiversity is suggested to positively influence multiple services but evidence from natural systems at scales relevant to management is scarce. Here, across a scale of 400,000 km2, we report that tree species richness in production forests shows positive to positively hump-shaped relationships with multiple ecosystem services. These include production of tree biomass, soil carbon storage, berry production and game production potential. For example, biomass production was approximately 50% greater with five than with one tree species. In addition, we show positive relationships between tree species richness and proxies for other biodiversity components. Importantly, no single tree species was able to promote all services, and some services were negatively correlated to each other. Management of production forests will therefore benefit from considering multiple tree species to sustain the full range of benefits that the society obtains from forests. PMID:23299890

  8. Structure and composition of altered riparian forests in an agricultural Amazonian landscape.

    PubMed

    Nagy, R Chelsea; Porder, Stephen; Neill, Christopher; Brando, Paulo; Quintino, Raimundo Mota; do Nascimento, Sebastiâo Aviz

    2015-09-01

    Deforestation and fragmentation influence the microclimate, vegetation structure, and composition of remaining patches of tropical forest. In the southern Amazon, at the frontier of cropland expansion, forests are converted and fragmented in a pattern that leaves standing riparian forests whose dimensions are mandated by the Brazilian National Forest Code. These altered riparian forests share many characteristics of well-studied upland forest fragments, but differ because they remain connected to larger areas of forest downstream, and because they may experience wetter soil conditions because reduction of forest cover in the surrounding watershed raises groundwater levels and increases stream runoff. We compared forest regeneration, structure, composition, and diversity in four areas of intact riparian forest and four areas each of narrow, medium, and wide altered riparian forests that have been surrounded by agriculture since the early 1980s. We found that seedling abundance was reduced by as much as 64% and sapling abundance was reduced by as much as 67% in altered compared to intact riparian forests. The most pronounced differences between altered and intact forest occurred near forest edges and within the narrowest sections of altered riparian forests. Woody plant species composition differed and diversity was reduced in altered forests compared to intact riparian forests. However, despite being fragmented for several decades, large woody plant biomass and carbon storage, the number of live or dead large woody plants, mortality rates, and the size distribution of woody plants did not differ significantly between altered and intact riparian forests. Thus, even in these relatively narrow forests with high edge: area ratios, we saw no evidence of the increases in mortality and declines in biomass that have been found in other tropical forest fragment studies. However, because of the changes in both species community and reduced regeneration, it is unclear how long

  9. Spatial Distribution Patterns in the Very Rare and Species-Rich Picea chihuahuana Tree Community (Mexico).

    PubMed

    Wehenkel, Christian; Brazão-Protázio, João Marcelo; Carrillo-Parra, Artemio; Martínez-Guerrero, José Hugo; Crecente-Campo, Felipe

    2015-01-01

    The very rare Mexican Picea chihuahuana tree community covers an area of no more than 300 ha in the Sierra Madre Occidental. This special tree community has been the subject of several studies aimed at learning more about the genetic structure and ecology of the species and the potential effects of climate change. The spatial distribution of trees is a result of many ecological processes and can affect the degree of competition between neighbouring trees, tree density, variability in size and distribution, regeneration, survival, growth, mortality, crown formation and the biological diversity within forest communities. Numerous scale-dependent measures have been established in order to describe spatial forest structure. The overall aim of most of these studies has been to obtain data to help design preservation and conservation strategies. In this study, we examined the spatial distribution pattern of trees in the P. chihuahuana tree community in 12 localities, in relation to i) tree stand density, ii) diameter distribution (vertical structure), iii) tree species diversity, iv) geographical latitude and v) tree dominance at a fine scale (in 0.25 ha plots), with the aim of obtaining a better understanding of the complex ecosystem processes and biological diversity. Because of the strongly mixed nature of this tree community, which often produces low population densities of each tree species and random tree fall gaps caused by tree death, we expect aggregated patterns in individual Picea chihuahuana trees and in the P. chihuahuana tree community, repulsive Picea patterns to other tree species and repulsive patterns of young to adult trees. Each location was represented by one plot of 50 x 50 m (0.25 ha) established in the centre of the tree community. The findings demonstrate that the hypothesis of aggregated tree pattern is not applicable to the mean pattern measured by Clark-Evans index, Uniform Angle index and Mean Directional index of the uneven-aged P

  10. Spatial Distribution Patterns in the Very Rare and Species-Rich Picea chihuahuana Tree Community (Mexico)

    PubMed Central

    Wehenkel, Christian; Brazão-Protázio, João Marcelo; Carrillo-Parra, Artemio; Martínez-Guerrero, José Hugo; Crecente-Campo, Felipe

    2015-01-01

    The very rare Mexican Picea chihuahuana tree community covers an area of no more than 300 ha in the Sierra Madre Occidental. This special tree community has been the subject of several studies aimed at learning more about the genetic structure and ecology of the species and the potential effects of climate change. The spatial distribution of trees is a result of many ecological processes and can affect the degree of competition between neighbouring trees, tree density, variability in size and distribution, regeneration, survival, growth, mortality, crown formation and the biological diversity within forest communities. Numerous scale-dependent measures have been established in order to describe spatial forest structure. The overall aim of most of these studies has been to obtain data to help design preservation and conservation strategies. In this study, we examined the spatial distribution pattern of trees in the P. chihuahuana tree community in 12 localities, in relation to i) tree stand density, ii) diameter distribution (vertical structure), iii) tree species diversity, iv) geographical latitude and v) tree dominance at a fine scale (in 0.25 ha plots), with the aim of obtaining a better understanding of the complex ecosystem processes and biological diversity. Because of the strongly mixed nature of this tree community, which often produces low population densities of each tree species and random tree fall gaps caused by tree death, we expect aggregated patterns in individual Picea chihuahuana trees and in the P. chihuahuana tree community, repulsive Picea patterns to other tree species and repulsive patterns of young to adult trees. Each location was represented by one plot of 50 x 50 m (0.25 ha) established in the centre of the tree community. The findings demonstrate that the hypothesis of aggregated tree pattern is not applicable to the mean pattern measured by Clark-Evans index, Uniform Angle index and Mean Directional index of the uneven-aged P

  11. Basal area growth for 15 tropical tree species in Puerto Rico

    Treesearch

    Bernard R. Parresol

    1995-01-01

    The tabonuco forests of Puerto Rico support a diverse population of tree species valued for timber, fuel, food, wildlife food and cover, and erosion control among other uses. Tree basal area growth data spanning 39 years are available on 15 species from eight permanent plots in the Luquillo Experimental Forest. The complexity of the rain forest challenges current...

  12. Genetic evidence for predominantly hydrochoric gene flow in the invasive riparian plant Impatiens glandulifera (Himalayan balsam)

    PubMed Central

    Love, Heather M.; Maggs, Christine A.; Murray, Tomás E.; Provan, Jim

    2013-01-01

    Background and Aims Riparian systems are prone to invasion by alien plant species. The spread of invasive riparian plants may be facilitated by hydrochory, the transport of seeds by water, but while ecological studies have highlighted the possible role of upstream source populations in the establishment and persistence of stands of invasive riparian plant species, population genetic studies have as yet not fully addressed the potential role of hydrochoric dispersal in such systems. Methods A population genetics approach based on a replicated bifurcate sampling design is used to test hypotheses consistent with patterns of unidirectional, linear gene flow expected under hydrochoric dispersal of the invasive riparian plant Impatiens glandulifera in two contrasting river systems. Key results A significant increase in levels of genetic diversity downstream was observed, consistent with the accumulation of propagules from upstream source populations, and strong evidence was found for organization of this diversity between different tributaries, reflecting the dendritic organization of the river systems studied. Conclusions These findings indicate that hydrochory, rather than anthropogenic dispersal, is primarily responsible for the spread of I. glandulifera in these river systems, and this is relevant to potential approaches to the control of invasive riparian plant species. PMID:24169594

  13. Riparian communities associated with pacific northwest headwater streams: assemblages, processes, and uniqueness.

    Treesearch

    John S. Richardson; Robert J. Naiman; Frederick J. Swanson; David E. Hibbs

    2005-01-01

    Riparian areas of large streams provide important habitat to many species and control many instream processes - but is the same true for the margins of small streams? This review considers riparian areas alongside small streams in forested, mountainous areas of the Pacific Northwest and asks if there are fundamental ecological differences from larger streams and from...

  14. Supplemental planting of early successional tree species during bottomland hardwood afforestation

    USGS Publications Warehouse

    Twedt, D.J.; Wilson, R.R.; Outcalt, Kenneth W.

    2002-01-01

    Reforestation of former bottom land hardwood forests that have been cleared for agriculture (i.e., afforestation) has historically emphasized planting heavy-seeded oaks (Quercus spp.) and pecans (Carya spp.). These species are slow to develop vertical forest structure. However, vertical forest structure is key to colonization of afforested sites by forest birds. Although early-successional tree species often enhance vertical structure, few of these species invade afforested sites that are distant from seed sources. Furthermore, many land mangers are reluctant to establish and maintain stands of fast-growing plantation trees. Therefore, on 40 afforested bottomland sites, we supplemented heavy-seeded seedlings with 8 patches of fast-growing trees: 4 patches of 12 eastern cottonwood (Populus deltoides) stem cuttings and 4 patches of 12 American sycamore (Platanus occidentalis) seedlings. To enhance survival and growth, tree patches were subjected to 4 weed control treatments: (1) physical weed barriers, (2) chemical herbicide, (3) both physical and chemical weed control, or (4) no weed control. Overall, first-year survival of cottonwood and sycamore was 25 percent and 47 percent, respectively. Second-year survival of extant trees was 52 percent for cottonwood and 77 percent for sycamore. Physical weed barriers increased survival of cottonwoods to 30 percent versus 18 percent survival with no weed control. Similarly, sycamore survival was increased from 49 percent without weed control to 64 percent with physical weed barriers. Chemical weed control adversely impacted sycamore and reduced survival to 35 percent. Tree heights did not differ between species or among weed control treatments. Girdling of trees by deer often destroyed saplings. Thus, little increase in vertical structure was detected between growing seasons. Application of fertilizer and protection via tree shelters did not improve survival or vertical development of sycamore or cottonwood.

  15. Tree species traits influence soil physical, chemical, and biological properties in high elevation forests.

    PubMed

    Ayres, Edward; Steltzer, Heidi; Berg, Sarah; Wallenstein, Matthew D; Simmons, Breana L; Wall, Diana H

    2009-06-18

    Previous studies have shown that plants often have species-specific effects on soil properties. In high elevation forests in the Southern Rocky Mountains, North America, areas that are dominated by a single tree species are often adjacent to areas dominated by another tree species. Here, we assessed soil properties beneath adjacent stands of trembling aspen, lodgepole pine, and Engelmann spruce, which are dominant tree species in this region and are distributed widely in North America. We hypothesized that soil properties would differ among stands dominated by different tree species and expected that aspen stands would have higher soil temperatures due to their open structure, which, combined with higher quality litter, would result in increased soil respiration rates, nitrogen availability, and microbial biomass, and differences in soil faunal community composition. We assessed soil physical, chemical, and biological properties at four sites where stands of aspen, pine, and spruce occurred in close proximity to one-another in the San Juan Mountains, Colorado. Leaf litter quality differed among the tree species, with the highest nitrogen (N) concentration and lowest lignin:N in aspen litter. Nitrogen concentration was similar in pine and spruce litter, but lignin:N was highest in pine litter. Soil temperature and moisture were highest in aspen stands, which, in combination with higher litter quality, probably contributed to faster soil respiration rates from stands of aspen. Soil carbon and N content, ammonium concentration, and microbial biomass did not differ among tree species, but nitrate concentration was highest in aspen soil and lowest in spruce soil. In addition, soil fungal, bacterial, and nematode community composition and rotifer, collembolan, and mesostigmatid mite abundance differed among the tree species, while the total abundance of nematodes, tardigrades, oribatid mites, and prostigmatid mites did not. Although some soil characteristics were

  16. Foliar fungi of Betula pendula: impact of tree species mixtures and assessment methods

    PubMed Central

    Nguyen, Diem; Boberg, Johanna; Cleary, Michelle; Bruelheide, Helge; Hönig, Lydia; Koricheva, Julia; Stenlid, Jan

    2017-01-01

    Foliar fungi of silver birch (Betula pendula) in an experimental Finnish forest were investigated across a gradient of tree species richness using molecular high-throughput sequencing and visual macroscopic assessment. We hypothesized that the molecular approach detects more fungal taxa than visual assessment, and that there is a relationship among the most common fungal taxa detected by both techniques. Furthermore, we hypothesized that the fungal community composition, diversity, and distribution patterns are affected by changes in tree diversity. Sequencing revealed greater diversity of fungi on birch leaves than the visual assessment method. One species showed a linear relationship between the methods. Species-specific variation in fungal community composition could be partially explained by tree diversity, though overall fungal diversity was not affected by tree diversity. Analysis of specific fungal taxa indicated tree diversity effects at the local neighbourhood scale, where the proportion of birch among neighbouring trees varied, but not at the plot scale. In conclusion, both methods may be used to determine tree diversity effects on the foliar fungal community. However, high-throughput sequencing provided higher resolution of the fungal community, while the visual macroscopic assessment detected functionally active fungal species. PMID:28150710

  17. Soil phosphorus heterogeneity promotes tree species diversity and phylogenetic clustering in a tropical seasonal rainforest.

    PubMed

    Xu, Wumei; Ci, Xiuqin; Song, Caiyun; He, Tianhua; Zhang, Wenfu; Li, Qiaoming; Li, Jie

    2016-12-01

    The niche theory predicts that environmental heterogeneity and species diversity are positively correlated in tropical forests, whereas the neutral theory suggests that stochastic processes are more important in determining species diversity. This study sought to investigate the effects of soil nutrient (nitrogen and phosphorus) heterogeneity on tree species diversity in the Xishuangbanna tropical seasonal rainforest in southwestern China. Thirty-nine plots of 400 m 2 (20 × 20 m) were randomly located in the Xishuangbanna tropical seasonal rainforest. Within each plot, soil nutrient (nitrogen and phosphorus) availability and heterogeneity, tree species diversity, and community phylogenetic structure were measured. Soil phosphorus heterogeneity and tree species diversity in each plot were positively correlated, while phosphorus availability and tree species diversity were not. The trees in plots with low soil phosphorus heterogeneity were phylogenetically overdispersed, while the phylogenetic structure of trees within the plots became clustered as heterogeneity increased. Neither nitrogen availability nor its heterogeneity was correlated to tree species diversity or the phylogenetic structure of trees within the plots. The interspecific competition in the forest plots with low soil phosphorus heterogeneity could lead to an overdispersed community. However, as heterogeneity increase, more closely related species may be able to coexist together and lead to a clustered community. Our results indicate that soil phosphorus heterogeneity significantly affects tree diversity in the Xishuangbanna tropical seasonal rainforest, suggesting that deterministic processes are dominant in this tropical forest assembly.

  18. Costs of Producing Biomass from Riparian Buffer Strips

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Turhollow, A.

    2000-09-01

    Nutrient runoff from poultry litter applied to agricultural fields in the Delmarva Peninsula contributes to high nutrient loadings in Chesapeake Bay. One potential means of ameliorating this problem is the use of riparian buffer strips. Riparian buffer strips intercept overland flows of water, sediments, nutrients, and pollutants; and ground water flows of nutrients and pollutants. Costs are estimated for three biomass systems grown on buffer strips: willow planted at a density of 15,300 trees/ha (6200 trees/acre); poplar planted at a density of 1345 trees/ha (545 trees/acre); and switchgrass. These costs are estimated for five different scenarios: (1) total economic costs,more » where everything is costed [cash costs, noncash costs (e.g., depreciation), land rent, labor]; (2) costs with Conservation Reserve Program (CRP) payments (which pays 50% of establishment costs and an annual land rent); (3) costs with enhanced CRP payments (which pays 95% of establishment costs and an annual payment of approximately 170% of land rent for trees and 150% of land rent for grasses); (4) costs when buffer strips are required, but harvest of biomass is not required [costs borne by biomass are for yield enhancing activities (e.g., fertilization), harvest, and transport]; and (5) costs when buffer strips are required. and harvest of biomass is required to remove nutrients (costs borne by biomass are for yield enhancing activities and transport). CRP regulations would have to change to allow harvest. Delivered costs of willow, poplar, and switchgrass [including transportation costs of $0.38/GJ ($0.40/million Btu) for switchgrass and $0.57/GJ ($0.60/million Btu) for willow and poplar] at 11.2 dry Mg/ha-year (5 dry tons/acre-year) for the five cost scenarios listed above are [$/GJ ($million BIN)]: (1) 3.30-5.45 (3.45-5.75); (2) 2.30-3.80 (2.45-4.00); (3) 1.70-2.45 (1.80-2.60); (4) l-85-3.80 (1.95-4.05); and (5) 0.80-1.50 (0.85-1.60). At yields of 15.7 to 17.9 GJ/ha-year (7 to 8 dry

  19. Growth and reproduction respond differently to climate in three Neotropical tree species.

    PubMed

    Alfaro-Sánchez, Raquel; Muller-Landau, Helene C; Wright, S Joseph; Camarero, J Julio

    2017-06-01

    The response of tropical forests to anthropogenic climate change is critically important to future global carbon budgets, yet remains highly uncertain. Here, we investigate how precipitation, temperature, solar radiation and dry- and wet-season lengths are related to annual tree growth, flower production, and fruit production in three moist tropical forest tree species using long-term datasets from tree rings and litter traps in central Panama. We also evaluated how growth, flower, and fruit production were interrelated. We found that growth was positively correlated with wet-season precipitation in all three species: Jacaranda copaia (r = 0.63), Tetragastris panamensis (r = 0.39) and Trichilia tuberculata (r = 0.39). Flowering and fruiting in Jacaranda were negatively related to current-year dry-season rainfall and positively related to prior-year dry-season rainfall. Flowering in Tetragastris was negatively related to current-year annual mean temperature while Trichilia showed no significant relationships of reproduction with climate. Growth was significantly related to reproduction only in Tetragastris, where it was positively related to previous year fruiting. Our results suggest that tree growth in moist tropical forest tree species is generally reduced by drought events such as those associated with strong El Niño events. In contrast, interannual variation in reproduction is not generally associated with growth and has distinct and species-specific climate responses, with positive effects of El Niño events in some species. Understanding these contrasting climate effects on tree growth and reproduction is critical to predicting changes in tropical forest dynamics and species composition under climate change.

  20. Canopy tree species determine herb layer biomass and species composition on a reclaimed mine spoil heap.

    PubMed

    Rawlik, Mateusz; Kasprowicz, Marek; Jagodziński, Andrzej M; Kaźmierowski, Cezary; Łukowiak, Remigiusz; Grzebisz, Witold

    2018-09-01

    According facilitative models of succession, trees are great forest ecosystem engineers. The strength of tree stand influences on habitat were tested in rather homogenous conditions where heterogeneity of site condition was not an important influence. We hypothesized that canopy composition affects total aboveground vascular herb layer biomass (THB) and species composition of herb layer plant biomass (SCHB) more significantly than primary soil fertility or slope exposure. The study was conducted in 227 randomly selected research plots in seven types of forest stands: pure with Alnus glutinosa, Betula pendula, Pinus sylvestris, Quercus petraea and Robinia pseudoacacia, and mixed with dominance of Acer pseudoplatanus or Betula pendula located on hilltop and northern, eastern, western, and southern slopes on a reclaimed, afforested post-mining spoil heap of the Bełchatów Brown Coal Mine (Poland). Generalized linear models (GLZ) showed that tree stand species were the best predictors of THB. Non-parametric variance tests showed significantly higher (nearly four times) THB under canopies of A. glutinosa, R. pseudoacacia, B. pendula and Q. petraea, compared to the lowest THB found under canopies of P. sylvestris and mixed with A. pseudoplatanus. Redundancy Analysis (RDA) showed that SCHB was significantly differentiated along gradients of light-nutrient herb layer species requirements. RDA and non-parametric variance tests showed that SCHB under canopies of A. glutinosa, R. pseudoacacia and mixed with A. pseudoplatanus had large shares of nitrophilous ruderal species (32%, 31% and 11%, respectively), whereas SCHB under B. pendula, Q. petraea, mixed with B. pendula and P. sylvestris were dominated by light-demanding meadow (49%, 51%, 51% and 36%, respectively) and Poaceae species. The results indicated the dominant role of tree stand composition in habitat-forming processes, and although primary site properties had minor importance, they were also modified by tree stand

  1. Headwater stream flow, climate variation, and riparian buffers with thinning in western Oregon

    Treesearch

    Julia I. Burton; Deanna H. Olson; Klaus J. Puettmann

    2013-01-01

    Headwater streams and adjacent riparian areas provide reproductive, foraging, and dispersal habitat for many forest-dependent species, especially amphibians. Although previous studies have shown that the composition of aquatic and riparian animal communities is associated with spatial and temporal patterns of stream fl ow, the relationships among stream fl ow, climate...

  2. Improving genetic conservation of tree species

    Treesearch

    Pam Allenstein; Jennifer DeWoody; David Gwaze; Valerie Hipkins; Gary Man; Anna Schoettle; Kirsty Shaw; Murphy Westwood

    2017-01-01

    The aim of this workshop breakout group session was to review significant gaps within each of three major themes (In-situ Conservation, Ex-situ Conservation, and Restoration of Species and Ecosystems) and to identify actionable solutions to move genetic conservation efforts forward. In order to identify solutions and action items for the tree conservation community,...

  3. Crown-Level Tree Species Classification Using Integrated Airborne Hyperspectral and LIDAR Remote Sensing Data

    NASA Astrophysics Data System (ADS)

    Wang, Z.; Wu, J.; Wang, Y.; Kong, X.; Bao, H.; Ni, Y.; Ma, L.; Jin, J.

    2018-05-01

    Mapping tree species is essential for sustainable planning as well as to improve our understanding of the role of different trees as different ecological service. However, crown-level tree species automatic classification is a challenging task due to the spectral similarity among diversified tree species, fine-scale spatial variation, shadow, and underlying objects within a crown. Advanced remote sensing data such as airborne Light Detection and Ranging (LiDAR) and hyperspectral imagery offer a great potential opportunity to derive crown spectral, structure and canopy physiological information at the individual crown scale, which can be useful for mapping tree species. In this paper, an innovative approach was developed for tree species classification at the crown level. The method utilized LiDAR data for individual tree crown delineation and morphological structure extraction, and Compact Airborne Spectrographic Imager (CASI) hyperspectral imagery for pure crown-scale spectral extraction. Specifically, four steps were include: 1) A weighted mean filtering method was developed to improve the accuracy of the smoothed Canopy Height Model (CHM) derived from LiDAR data; 2) The marker-controlled watershed segmentation algorithm was, therefore, also employed to delineate the tree-level canopy from the CHM image in this study, and then individual tree height and tree crown were calculated according to the delineated crown; 3) Spectral features within 3 × 3 neighborhood regions centered on the treetops detected by the treetop detection algorithm were derived from the spectrally normalized CASI imagery; 4) The shape characteristics related to their crown diameters and heights were established, and different crown-level tree species were classified using the combination of spectral and shape characteristics. Analysis of results suggests that the developed classification strategy in this paper (OA = 85.12 %, Kc = 0.90) performed better than LiDAR-metrics method (OA = 79

  4. Sampling procedures for inventory of commercial volume tree species in Amazon Forest.

    PubMed

    Netto, Sylvio P; Pelissari, Allan L; Cysneiros, Vinicius C; Bonazza, Marcelo; Sanquetta, Carlos R

    2017-01-01

    The spatial distribution of tropical tree species can affect the consistency of the estimators in commercial forest inventories, therefore, appropriate sampling procedures are required to survey species with different spatial patterns in the Amazon Forest. For this, the present study aims to evaluate the conventional sampling procedures and introduce the adaptive cluster sampling for volumetric inventories of Amazonian tree species, considering the hypotheses that the density, the spatial distribution and the zero-plots affect the consistency of the estimators, and that the adaptive cluster sampling allows to obtain more accurate volumetric estimation. We use data from a census carried out in Jamari National Forest, Brazil, where trees with diameters equal to or higher than 40 cm were measured in 1,355 plots. Species with different spatial patterns were selected and sampled with simple random sampling, systematic sampling, linear cluster sampling and adaptive cluster sampling, whereby the accuracy of the volumetric estimation and presence of zero-plots were evaluated. The sampling procedures applied to species were affected by the low density of trees and the large number of zero-plots, wherein the adaptive clusters allowed concentrating the sampling effort in plots with trees and, thus, agglutinating more representative samples to estimate the commercial volume.

  5. Forest tree species discrimination in western Himalaya using EO-1 Hyperion

    NASA Astrophysics Data System (ADS)

    George, Rajee; Padalia, Hitendra; Kushwaha, S. P. S.

    2014-05-01

    The information acquired in the narrow bands of hyperspectral remote sensing data has potential to capture plant species spectral variability, thereby improving forest tree species mapping. This study assessed the utility of spaceborne EO-1 Hyperion data in discrimination and classification of broadleaved evergreen and conifer forest tree species in western Himalaya. The pre-processing of 242 bands of Hyperion data resulted into 160 noise-free and vertical stripe corrected reflectance bands. Of these, 29 bands were selected through step-wise exclusion of bands (Wilk's Lambda). Spectral Angle Mapper (SAM) and Support Vector Machine (SVM) algorithms were applied to the selected bands to assess their effectiveness in classification. SVM was also applied to broadband data (Landsat TM) to compare the variation in classification accuracy. All commonly occurring six gregarious tree species, viz., white oak, brown oak, chir pine, blue pine, cedar and fir in western Himalaya could be effectively discriminated. SVM produced a better species classification (overall accuracy 82.27%, kappa statistic 0.79) than SAM (overall accuracy 74.68%, kappa statistic 0.70). It was noticed that classification accuracy achieved with Hyperion bands was significantly higher than Landsat TM bands (overall accuracy 69.62%, kappa statistic 0.65). Study demonstrated the potential utility of narrow spectral bands of Hyperion data in discriminating tree species in a hilly terrain.

  6. State-and-transition prototype model of riparian vegetation downstream of Glen Canyon Dam, Arizona

    USGS Publications Warehouse

    Ralston, Barbara E.; Starfield, Anthony M.; Black, Ronald S.; Van Lonkhuyzen, Robert A.

    2014-01-01

    Facing an altered riparian plant community dominated by nonnative species, resource managers are increasingly interested in understanding how to manage and promote healthy riparian habitats in which native species dominate. For regulated rivers, managing flows is one tool resource managers consider to achieve these goals. Among many factors that can influence riparian community composition, hydrology is a primary forcing variable. Frame-based models, used successfully in grassland systems, provide an opportunity for stakeholders concerned with riparian systems to evaluate potential riparian vegetation responses to alternative flows. Frame-based, state-and-transition models of riparian vegetation for reattachment bars, separation bars, and the channel margin found on the Colorado River downstream of Glen Canyon Dam were constructed using information from the literature. Frame-based models can be simple spreadsheet models (created in Microsoft® Excel) or developed further with programming languages (for example, C-sharp). The models described here include seven community states and five dam operations that cause transitions between states. Each model divides operations into growing (April–September) and non-growing seasons (October–March) and incorporates upper and lower bar models, using stage elevation as a division. The inputs (operations) can be used by stakeholders to evaluate flows that may promote dynamic riparian vegetation states, or identify those flow options that may promote less desirable states (for example, Tamarisk [Tamarix sp.] temporarily flooded shrubland). This prototype model, although simple, can still elicit discussion about operational options and vegetation response.

  7. [Vegetation diversity, composition and structure in a cattle agro-landscape of Matiguás, Nicaragua].

    PubMed

    Merlos, Dalia Sánchez; Harvey, Celia A; Grijalva, Alfredo; Medina, Arnulfo; Vílchez, Sergio; Hernández, Blas

    2005-01-01

    The diversity, composition and structure of vegetation in a cattle landscape in Matiguás, Nicaragua was characterized, and the floristic and structural differences of six types of habitats (secondary forests, riparian forests, charrales, live fences and pastures with high and low tree cover) were compared. A total of 3 949 trees of 180 species and 52 families were recorded. Forty six percent of the total trees reported for the landscape were represented by Guazuma ulmifolia (18.5%), Bursera simaruha (13.2%), Tabebuia rosea (6.3%), Enterolobium cyclocarpum (4.2%) and Albizia saman (3.4%). Many of the dominant species in the landscape were typical of open and disturbed areas. There were significant differences between the different habitats in the patterns of tree species richness, abundance, diversity, structure and floristic composition. The riparian forests had greater tree richness (p=0.0001) and diversity (p=0.0009) than other habitats. The floristic composition varied across habitats. with pairs of habitats sharing between 18.4 and 51.6% of the same tree species, and with clear differences in composition between the forested (riparian and secondary forests) and agricultural habitats. Of the habitats studied, the riparian forests and secondary forests seem to have greatest value for the conservation of the flora in the agropaisaje because they have the greatest species richness, and maintain small populations of endangered species. On the basis of the study, we recommend including agricultural landscapes in strategies to conserve tree diversity and suggest measures to ensure the maintenance of tree diversity in the Matiguas landscape.

  8. Accuracy and suitability of selected sampling methods within conifer dominated riparian zones

    Treesearch

    Theresa Marquardt; Hailemariam Temesgen; Paul D. Anderson

    2010-01-01

    Sixteen sampling alternatives were examined for their performance to quantify selected attributes of overstory conifers in riparian areas of western Oregon. Each alternative was examined at eight headwater forest locations based on 0.52 ha square stem maps. The alternatives were evaluated for selected stand attributes (tree per hectare, basal area per hectare, and...

  9. Can tree species diversity be assessed with Landsat data in a temperate forest?

    PubMed

    Arekhi, Maliheh; Yılmaz, Osman Yalçın; Yılmaz, Hatice; Akyüz, Yaşar Feyza

    2017-10-28

    The diversity of forest trees as an indicator of ecosystem health can be assessed using the spectral characteristics of plant communities through remote sensing data. The objectives of this study were to investigate alpha and beta tree diversity using Landsat data for six dates in the Gönen dam watershed of Turkey. We used richness and the Shannon and Simpson diversity indices to calculate tree alpha diversity. We also represented the relationship between beta diversity and remotely sensed data using species composition similarity and spectral distance similarity of sampling plots via quantile regression. A total of 99 sampling units, each 20 m × 20 m, were selected using geographically stratified random sampling method. Within each plot, the tree species were identified, and all of the trees with a diameter at breast height (dbh) larger than 7 cm were measured. Presence/absence and abundance data (tree species number and tree species basal area) of tree species were used to determine the relationship between richness and the Shannon and Simpson diversity indices, which were computed with ground field data, and spectral variables derived (2 × 2 pixels and 3 × 3 pixels) from Landsat 8 OLI data. The Shannon-Weiner index had the highest correlation. For all six dates, NDVI (normalized difference vegetation index) was the spectral variable most strongly correlated with the Shannon index and the tree diversity variables. The Ratio of green to red (VI) was the spectral variable least correlated with the tree diversity variables and the Shannon basal area. In both beta diversity curves, the slope of the OLS regression was low, while in the upper quantile, it was approximately twice the lower quantiles. The Jaccard index is closed to one with little difference in both two beta diversity approaches. This result is due to increasing the similarity between the sampling plots when they are located close to each other. The intercept differences between two

  10. Revegetation of the riparian zone of the Three Gorges Dam Reservoir leads to increased soil bacterial diversity.

    PubMed

    Ren, Qingshui; Li, Changxiao; Yang, Wenhang; Song, Hong; Ma, Peng; Wang, Chaoying; Schneider, Rebecca L; Morreale, Stephen J

    2018-06-06

    As one of the most active components in soil, bacteria can affect soil physicochemical properties, its biological characteristics, and even its quality and health. We characterized dynamics of the soil bacterial diversity in planted (with Taxodium distichum) and unplanted soil in the riparian zone of the Three Gorges Dam Reservoir (TGDR), in southwestern China, in order to accurately quantify the changes in long-term soil bacterial community structure after revegetation. Measurements were taken annually in situ in the TGDR over the course of 5 years, from 2012 to 2016. Soil chemical properties and bacterial diversity were analyzed in both the planted and unplanted soil. After revegetation, the soil chemical properties in planted soil were significantly different than in unplanted soil. The effects of treatment, time, and the interaction of both time and treatment had significant impacts on most diversity indices. Specifically, the bacterial community diversity indices in planted soil were significantly higher and more stable than that in unplanted soil. The correlation analyses indicated that the diversity indices correlated with the pH value, organic matter, and soil available nutrients. After revegetation in the riparian zone of the TGDR, the soil quality and health is closely related to the observed bacterial diversity, and a higher bacterial diversity avails the maintenance of soil functionality. Thus, more reforestation should be carried out in the riparian zone of the TGDR, so as to effectively mitigate the negative ecological impacts of the dam. Vegetating the reservoir banks with Taxodium distichum proved successful, but planting mixed stands of native tree species could promote even higher riparian soil biodiversity and improved levels of ecosystem functioning within the TGDR.

  11. Tree species diversity and distribution patterns in tropical forests of Garo Hills.

    Treesearch

    A. Kumar; B.G. Marcot; A. Saxena

    2006-01-01

    We analyzed phytosociological characteristics and diversity patterns of tree species of tropical forests of Garo Hills, western Meghalaya, northeast India. The main vegetation of the region included primary forests, secondary forests, and sal (Shorea robusta) plantations, with 162, 132, and 87 tree species, respectively. The Shannon-Wiener...

  12. Coupling groundwater and riparian vegetation models to assess effects of reservoir releases

    USGS Publications Warehouse

    Springer, Abraham E.; Wright, Julie M.; Shafroth, Patrick B.; Stromberg, Juliet C.; Patten, Duncan T.

    1999-01-01

    Although riparian areas in the arid southwestern United States are critical for maintaining species diversity, their extent and health have been declining since Euro‐American settlement. The purpose of this study was to develop a methodology to evaluate the potential for riparian vegetation restoration and groundwater recharge. A numerical groundwater flow model was coupled with a conceptual riparian vegetation model to predict hydrologic conditions favorable to maintaining riparian vegetation downstream of a reservoir. A Geographic Information System (GIS) was used for this one‐way coupling. Constant and seasonally varying releases from the dam were simulated using volumes anticipated to be permitted by a regional water supplier. Simulations indicated that seasonally variable releases would produce surface flow 5.4–8.5 km below the dam in a previously dry reach. Using depth to groundwater simulations from the numerical flow model with conceptual models of depths to water necessary for maintenance of riparian vegetation, the GIS analysis predicted a 5‐ to 6.5‐fold increase in the area capable of sustaining riparian vegetation.

  13. The surrounding landscape influences the diversity of leaf-litter ants in riparian cloud forest remnants.

    PubMed

    García-Martínez, Miguel Á; Valenzuela-González, Jorge E; Escobar-Sarria, Federico; López-Barrera, Fabiola; Castaño-Meneses, Gabriela

    2017-01-01

    Riparian vegetation is a distinctive and ecologically important element of landscapes worldwide. However, the relative influence of the surrounding landscape on the conservation of the biodiversity of riparian remnants in human-modified tropical landscapes is poorly understood. We studied the surrounding landscape to evaluate its influence on leaf-litter-ant alpha and beta diversity in riparian remnants in the tropical montane cloud forest region of central Veracruz, Mexico. Sampling was carried out in 12 sites with riparian vegetation during both rainy (2011) and dry (2012) seasons. Ten leaf-litter samples were collected along a 100-m transect per site and processed with Berlese-Tullgren funnels and Winkler sacks. Using remotely-sensed and ground-collected data, we characterized the landscape around each site according to nine land cover types and computed metrics of landscape composition and configuration. We collected a total of 8,684 ant individuals belonging to 53 species, 22 genera, 11 tribes, and 7 subfamilies. Species richness and the diversity of Shannon and Simpson increased significantly in remnants immersed in landscapes with a high percentage of riparian land cover and a low percentage of land covers with areas reforested with Pinus, cattle pastures, and human settlements and infrastructure. The composition of ant assemblages was a function of the percentage of riparian land cover in the landscape. This study found evidence that leaf-litter ants, a highly specialized guild of arthropods, are mainly impacted by landscape composition and the configuration of the focal remnant. Maintaining or improving the surrounding landscape quality of riparian vegetation remnants can stimulate the movement of biodiversity among forest and riparian remnants and foster the provision of ecosystem services by these ecosystems. Effective outcomes may be achieved by considering scientific knowledge during the early stages of riparian policy formulation, in addition to

  14. The surrounding landscape influences the diversity of leaf-litter ants in riparian cloud forest remnants

    PubMed Central

    Valenzuela-González, Jorge E.; Escobar-Sarria, Federico; López-Barrera, Fabiola; Castaño-Meneses, Gabriela

    2017-01-01

    Riparian vegetation is a distinctive and ecologically important element of landscapes worldwide. However, the relative influence of the surrounding landscape on the conservation of the biodiversity of riparian remnants in human-modified tropical landscapes is poorly understood. We studied the surrounding landscape to evaluate its influence on leaf-litter-ant alpha and beta diversity in riparian remnants in the tropical montane cloud forest region of central Veracruz, Mexico. Sampling was carried out in 12 sites with riparian vegetation during both rainy (2011) and dry (2012) seasons. Ten leaf-litter samples were collected along a 100-m transect per site and processed with Berlese-Tullgren funnels and Winkler sacks. Using remotely-sensed and ground-collected data, we characterized the landscape around each site according to nine land cover types and computed metrics of landscape composition and configuration. We collected a total of 8,684 ant individuals belonging to 53 species, 22 genera, 11 tribes, and 7 subfamilies. Species richness and the diversity of Shannon and Simpson increased significantly in remnants immersed in landscapes with a high percentage of riparian land cover and a low percentage of land covers with areas reforested with Pinus, cattle pastures, and human settlements and infrastructure. The composition of ant assemblages was a function of the percentage of riparian land cover in the landscape. This study found evidence that leaf-litter ants, a highly specialized guild of arthropods, are mainly impacted by landscape composition and the configuration of the focal remnant. Maintaining or improving the surrounding landscape quality of riparian vegetation remnants can stimulate the movement of biodiversity among forest and riparian remnants and foster the provision of ecosystem services by these ecosystems. Effective outcomes may be achieved by considering scientific knowledge during the early stages of riparian policy formulation, in addition to

  15. Regeneration and invasion of cottonwood riparian forest following wildfire

    USGS Publications Warehouse

    Wonkka, Carissa L.; Twidwell, Dirac; Bielski, Christine H.; Allen, Craig R.; Stambaugh, Michael C.

    2018-01-01

    Populus deltoides is considered to be a weak resprouter and highly susceptible to wildfire, but few post-wildfire studies have tracked P. deltoides response and resprouting within the Great Plains of North America. Following a wildfire in southwestern Kansas, U.S.A., we surveyed burned and unburned areas of a cottonwood riparian forest along the Cimarron River that included a major understory invader, tamarisk (Tamarix ramosissima Ledeb.). We tested the following hypotheses, which are consistent with the current understanding of P. deltoides response to wildfire in the Great Plains: (1) regeneration of P. deltoides will be low in areas burned by the wildfire; (2) the number of dead P. deltoides individuals will be greater in the wildfire than unburned areas; and (3) tamarisk regeneration will be higher than P. deltoides regeneration in the wildfire areas because tamarisk is considered a stronger resprouter. We found evidence contrary to two of our hypotheses 3 years following the wildfire. (1) P. deltoides regeneration was high following the wildfire, averaging 692 individuals/ha. (2) The number of dead mature cottonwood trees was greater in wildfire plots than in unburned plots. (3) There was more P. deltoides regeneration than tamarisk regeneration following wildfire. These findings, which diverge from the majority of studies examining P. deltoides regeneration in the Great Plains, suggest that differing local environmental and forest stand conditions, coupled with the timing and intensity of the fire, could be important determinants of riparian forest species' responses to wildfire.

  16. Optimal tree-stem bucking of northeastern species of China

    Treesearch

    Jingxin Wang; Chris B. LeDoux; Joseph McNeel

    2004-01-01

    An application of optimal tree-stem bucking to the northeastern tree species of China is reported. The bucking procedures used in this region are summarized, which are the basic guidelines for the optimal bucking design. The directed graph approach was adopted to generate the bucking patterns by using the network analysis labeling algorithm. A computer-based bucking...

  17. EnviroAtlas - Des Moines, IA - 51m Riparian Buffer Vegetated Cover

    EPA Pesticide Factsheets

    This EnviroAtlas dataset describes the percentage of a 51-m riparian buffer that is vegetated. Vegetated cover is defined as Trees & Forest and Grass & Herbaceous. There is a potential for decreased water quality in areas where the riparian buffer is less vegetated. The displayed line represents the center of the analyzed riparian buffer. The water bodies analyzed include hydrologically connected streams, rivers, connectors, reservoirs, lakes/ponds, ice masses, washes, locks, and rapids within the EnviroAtlas community area. This dataset was produced by the US EPA to support research and online mapping activities related to EnviroAtlas. EnviroAtlas (https://enviroatlas.epa.gov/EnviroAtlas) allows the user to interact with a web-based, easy-to-use, mapping application to view and analyze multiple ecosystem services for the contiguous United States. The dataset is available as downloadable data (https://edg.epa.gov/data/Public/ORD/EnviroAtlas) or as an EnviroAtlas map service. Additional descriptive information about each attribute in this dataset can be found in its associated EnviroAtlas Fact Sheet (https://www.epa.gov/enviroatlas/enviroatlas-fact-sheets)

  18. EnviroAtlas - New York, NY - 51m Riparian Buffer Forest Cover

    EPA Pesticide Factsheets

    This EnviroAtlas dataset describes the percentage of a 51-m riparian buffer that is forested. In this community, forest is defined as Trees & Forest. There is a potential for decreased water quality in areas where the riparian buffer is less forested. The displayed line represents the center of the analyzed riparian buffer. The water bodies analyzed include hydrologically connected streams, rivers, connectors, reservoirs, lakes/ponds, ice masses, washes, locks, and rapids within the EnviroAtlas community area. This dataset was produced by the US EPA to support research and online mapping activities related to EnviroAtlas. EnviroAtlas (https://www.epa.gov/enviroatlas) allows the user to interact with a web-based, easy-to-use, mapping application to view and analyze multiple ecosystem services for the contiguous United States. The dataset is available as downloadable data (https://edg.epa.gov/data/Public/ORD/EnviroAtlas) or as an EnviroAtlas map service. Additional descriptive information about each attribute in this dataset can be found in its associated EnviroAtlas Fact Sheet (https://www.epa.gov/enviroatlas/enviroatlas-fact-sheets)

  19. EnviroAtlas - Des Moines, IA - 51m Riparian Buffer Forest Cover

    EPA Pesticide Factsheets

    This EnviroAtlas dataset describes the percentage of a 51-m riparian buffer that is forested. Forest is defined as Trees & Forest. There is a potential for decreased water quality in areas where the riparian buffer is less forested. The displayed line represents the center of the analyzed riparian buffer. The water bodies analyzed include hydrologically connected streams, rivers, connectors, reservoirs, lakes/ponds, ice masses, washes, locks, and rapids within the EnviroAtlas community area. This dataset was produced by the US EPA to support research and online mapping activities related to EnviroAtlas. EnviroAtlas (https://enviroatlas.epa.gov/EnviroAtlas) allows the user to interact with a web-based, easy-to-use, mapping application to view and analyze multiple ecosystem services for the contiguous United States. The dataset is available as downloadable data (https://edg.epa.gov/data/Public/ORD/EnviroAtlas) or as an EnviroAtlas map service. Additional descriptive information about each attribute in this dataset can be found in its associated EnviroAtlas Fact Sheet (https://www.epa.gov/enviroatlas/enviroatlas-fact-sheets)

  20. When do species-tree and concatenated estimates disagree? An empirical analysis with higher-level scincid lizard phylogeny.

    PubMed

    Lambert, Shea M; Reeder, Tod W; Wiens, John J

    2015-01-01

    Simulation studies suggest that coalescent-based species-tree methods are generally more accurate than concatenated analyses. However, these species-tree methods remain impractical for many large datasets. Thus, a critical but unresolved issue is when and why concatenated and coalescent species-tree estimates will differ. We predict such differences for branches in concatenated trees that are short, weakly supported, and have conflicting gene trees. We test these predictions in Scincidae, the largest lizard family, with data from 10 nuclear genes for 17 ingroup taxa and 44 genes for 12 taxa. We support our initial predictions, andsuggest that simply considering uncertainty in concatenated trees may sometimes encompass the differences between these methods. We also found that relaxed-clock concatenated trees can be surprisingly similar to the species-tree estimate. Remarkably, the coalescent species-tree estimates had slightly lower support values when based on many more genes (44 vs. 10) and a small (∼30%) reduction in taxon sampling. Thus, taxon sampling may be more important than gene sampling when applying species-tree methods to deep phylogenetic questions. Finally, our coalescent species-tree estimates tentatively support division of Scincidae into three monophyletic subfamilies, a result otherwise found only in concatenated analyses with extensive species sampling. Copyright © 2014 Elsevier Inc. All rights reserved.

  1. Climate correlates of 20 years of trophic changes in a high-elevation riparian system

    USGS Publications Warehouse

    Martin, T.E.

    2007-01-01

    The consequences of climate change for ecosystem structure and function remain largely unknown. Here, I examine the ability of climate variation to explain long-term changes in bird and plant populations, as well as trophic interactions in a high-elevation riparian system in central Arizona, USA, based on 20 years of study. Abundances of dominant deciduous trees have declined dramatically over the 20 years, correlated with a decline in overwinter snowfall. Snowfall can affect overwinter presence of elk, whose browsing can significantly impact deciduous tree abundance. Thus, climate may affect the plant community indirectly through effects on herbivores, but may also act directly by influencing water availability for plants. Seven species of birds were found to initiate earlier breeding associated with an increase in spring temperature across years. The advance in breeding time did not affect starvation of young or clutch size. Earlier breeding also did not increase the length of the breeding season for single-brooded species, but did for multi-brooded species. Yet, none of these phenology-related changes was associated with bird population trends. Climate had much larger consequences for these seven bird species by affecting trophic levels below (plants) and above (predators) the birds. In particular, the climate-related declines in deciduous vegetation led to decreased abundance of preferred bird habitat and increased nest predation rates. In addition, summer precipitation declined over time, and drier summers also were further associated with greater nest predation in all species. The net result was local extinction and severe population declines in some previously common bird species, whereas one species increased strongly in abundance, and two species did not show clear population changes. These data indicate that climate can alter ecosystem structure and function through complex pathways that include direct and indirect effects on abundances and interactions

  2. Climate correlates of 20 years of trophic changes in a high-elevation riparian system.

    PubMed

    Martin, Thomas E

    2007-02-01

    The consequences of climate change for ecosystem structure and function remain largely unknown. Here, I examine the ability of climate variation to explain long-term changes in bird and plant populations, as well as trophic interactions in a high-elevation riparian system in central Arizona, USA, based on 20 years of study. Abundances of dominant deciduous trees have declined dramatically over the 20 years, correlated with a decline in overwinter snowfall. Snowfall can affect overwinter presence of elk, whose browsing can significantly impact deciduous tree abundance. Thus, climate may affect the plant community indirectly through effects on herbivores, but may also act directly by influencing water availability for plants. Seven species of birds were found to initiate earlier breeding associated with an increase in spring temperature across years. The advance in breeding time did not affect starvation of young or clutch size. Earlier breeding also did not increase the length of the breeding season for single-brooded species, but did for multi-brooded species. Yet, none of these phenology-related changes was associated with bird population trends. Climate had much larger consequences for these seven bird species by affecting trophic levels below (plants) and above (predators) the birds. In particular, the climate-related declines in deciduous vegetation led to decreased abundance of preferred bird habitat and increased nest predation rates. In addition, summer precipitation declined over time, and drier summers also were further associated with greater nest predation in all species. The net result was local extinction and severe population declines in some previously common bird species, whereas one species increased strongly in abundance, and two species did not show clear population changes. These data indicate that climate can alter ecosystem structure and function through complex pathways that include direct and indirect effects on abundances and interactions

  3. Tree diversity and species identity effects on soil fungi, protists and animals are context dependent.

    PubMed

    Tedersoo, Leho; Bahram, Mohammad; Cajthaml, Tomáš; Põlme, Sergei; Hiiesalu, Indrek; Anslan, Sten; Harend, Helery; Buegger, Franz; Pritsch, Karin; Koricheva, Julia; Abarenkov, Kessy

    2016-02-01

    Plant species richness and the presence of certain influential species (sampling effect) drive the stability and functionality of ecosystems as well as primary production and biomass of consumers. However, little is known about these floristic effects on richness and community composition of soil biota in forest habitats owing to methodological constraints. We developed a DNA metabarcoding approach to identify the major eukaryote groups directly from soil with roughly species-level resolution. Using this method, we examined the effects of tree diversity and individual tree species on soil microbial biomass and taxonomic richness of soil biota in two experimental study systems in Finland and Estonia and accounted for edaphic variables and spatial autocorrelation. Our analyses revealed that the effects of tree diversity and individual species on soil biota are largely context dependent. Multiple regression and structural equation modelling suggested that biomass, soil pH, nutrients and tree species directly affect richness of different taxonomic groups. The community composition of most soil organisms was strongly correlated due to similar response to environmental predictors rather than causal relationships. On a local scale, soil resources and tree species have stronger effect on diversity of soil biota than tree species richness per se.

  4. Analysis of growth trend changes for 51 temperate tree species using Korea national forest inventory data

    NASA Astrophysics Data System (ADS)

    Park, M.; Moon, M.; Park, J.; Cho, S.; Kim, H. S.

    2016-12-01

    Individual tree growth rates can be affected by various factors such as species, soil fertility, stand development stage, disturbance, and climate etc. To estimate the effect of changes in tree growth rate on the structure and functionality of forest ecosystem in the future, we analyzed the change of species-specific growth trends using the fifth Korea national forest inventory data, which was collected from 2006 to 2010. The ring samples of average tree were collected from nationwide inventory plots and the total number of individual tree ring series was 69,128 covering 185 tree species. Among those, fifty one species with more than 100 tree ring series were used for our analysis. For growth-trend analysis, standardized regional curves of individual species growth were generated from three forest zone in South Korea; subarctic, cool temperate, warm temperate forest zone. Then individual tree ring series was indexed by dividing the growth of the tree by expected growth from standardized regional curves. Then the ratio of all tree ring series were aligned by year and the Spearman's correlation coefficient of each species was calculated. The results show that most of species had increasing growth rates as forests developed after Korean war. For the last thirty years, 67.3% of species including Quercus spp. and Zelkova serrata had positive growth trends, on the other hand, 11.5% of species including Pinus spp. showed negative growth trends probably due to the changes in successional stages in Korean forests and climate change. These trends also vary with climate zone and species. For examples, Pinus densiflora, which showed negative growth trend overall, had steep negative growth trends in boreal and temperate zone, whereas it showed no specific trend in sub-tropical climate zone. Our trend analysis on 51 temperate tree species growth will be essential to predict the temperate forests species change for the this century.

  5. Predicting spatial variations of tree species richness in tropical forests from high-resolution remote sensing.

    PubMed

    Fricker, Geoffrey A; Wolf, Jeffrey A; Saatchi, Sassan S; Gillespie, Thomas W

    2015-10-01

    There is an increasing interest in identifying theories, empirical data sets, and remote-sensing metrics that can quantify tropical forest alpha diversity at a landscape scale. Quantifying patterns of tree species richness in the field is time consuming, especially in regions with over 100 tree species/ha. We examine species richness in a 50-ha plot in Barro Colorado Island in Panama and test if biophysical measurements of canopy reflectance from high-resolution satellite imagery and detailed vertical forest structure and topography from light detection and ranging (lidar) are associated with species richness across four tree size classes (>1, 1-10, >10, and >20 cm dbh) and three spatial scales (1, 0.25, and 0.04 ha). We use the 2010 tree inventory, including 204,757 individuals belonging to 301 species of freestanding woody plants or 166 ± 1.5 species/ha (mean ± SE), to compare with remote-sensing data. All remote-sensing metrics became less correlated with species richness as spatial resolution decreased from 1.0 ha to 0.04 ha and tree size increased from 1 cm to 20 cm dbh. When all stems with dbh > 1 cm in 1-ha plots were compared to remote-sensing metrics, standard deviation in canopy reflectance explained 13% of the variance in species richness. The standard deviations of canopy height and the topographic wetness index (TWI) derived from lidar were the best metrics to explain the spatial variance in species richness (15% and 24%, respectively). Using multiple regression models, we made predictions of species richness across Barro Colorado Island (BCI) at the 1-ha spatial scale for different tree size classes. We predicted variation in tree species richness among all plants (adjusted r² = 0.35) and trees with dbh > 10 cm (adjusted r² = 0.25). However, the best model results were for understory trees and shrubs (dbh 1-10 cm) (adjusted r² = 0.52) that comprise the majority of species richness in tropical forests. Our results indicate that high

  6. A United States national prioritization framework for tree species vulnerability to climate change

    Treesearch

    Kevin M. Potter; Barbara S. Crane; William W. Hargrove

    2017-01-01

    Climate change is one of several threats that will increase the likelihood that forest tree species could experience population-level extirpation or species-level extinction. Scientists and managers from throughout the United States Forest Service have cooperated to develop a framework for conservation priority-setting assessments of forest tree species. This framework...

  7. How much does climate change threaten European forest tree species distributions?

    PubMed

    Dyderski, Marcin K; Paź, Sonia; Frelich, Lee E; Jagodziński, Andrzej M

    2018-03-01

    Although numerous species distribution models have been developed, most were based on insufficient distribution data or used older climate change scenarios. We aimed to quantify changes in projected ranges and threat level by the years 2061-2080, for 12 European forest tree species under three climate change scenarios. We combined tree distribution data from the Global Biodiversity Information Facility, EUFORGEN, and forest inventories, and we developed species distribution models using MaxEnt and 19 bioclimatic variables. Models were developed for three climate change scenarios-optimistic (RCP2.6), moderate (RCP4.5), and pessimistic (RPC8.5)-using three General Circulation Models, for the period 2061-2080. Our study revealed different responses of tree species to projected climate change. The species may be divided into three groups: "winners"-mostly late-successional species: Abies alba, Fagus sylvatica, Fraxinus excelsior, Quercus robur, and Quercus petraea; "losers"-mostly pioneer species: Betula pendula, Larix decidua, Picea abies, and Pinus sylvestris; and alien species-Pseudotsuga menziesii, Quercus rubra, and Robinia pseudoacacia, which may be also considered as "winners." Assuming limited migration, most of the species studied would face a significant decrease in suitable habitat area. The threat level was highest for species that currently have the northernmost distribution centers. Ecological consequences of the projected range contractions would be serious for both forest management and nature conservation. © 2017 John Wiley & Sons Ltd.

  8. A novel approach to internal crown characterization for coniferous tree species classification

    NASA Astrophysics Data System (ADS)

    Harikumar, A.; Bovolo, F.; Bruzzone, L.

    2016-10-01

    The knowledge about individual trees in forest is highly beneficial in forest management. High density small foot- print multi-return airborne Light Detection and Ranging (LiDAR) data can provide a very accurate information about the structural properties of individual trees in forests. Every tree species has a unique set of crown structural characteristics that can be used for tree species classification. In this paper, we use both the internal and external crown structural information of a conifer tree crown, derived from a high density small foot-print multi-return LiDAR data acquisition for species classification. Considering the fact that branches are the major building blocks of a conifer tree crown, we obtain the internal crown structural information using a branch level analysis. The structure of each conifer branch is represented using clusters in the LiDAR point cloud. We propose the joint use of the k-means clustering and geometric shape fitting, on the LiDAR data projected onto a novel 3-dimensional space, to identify branch clusters. After mapping the identified clusters back to the original space, six internal geometric features are estimated using a branch-level analysis. The external crown characteristics are modeled by using six least correlated features based on cone fitting and convex hull. Species classification is performed using a sparse Support Vector Machines (sparse SVM) classifier.

  9. Linked in: connecting riparian areas to support forest biodiversity

    Treesearch

    Marie Oliver; Kelly Burnett; Deanna Olson

    2010-01-01

    Many forest-dwelling species rely on both terrestrial and aquatic habitat for their survival. These species, including rare and little-understood amphibians and arthropods, live in and around headwater streams and disperse overland to neighboring headwater streams. Forest management policies that rely on riparian buffer strips and structurebased management—practices...

  10. Effects of experimental floods on riparian and aquatic ecosystems: Bill Williams River, Arizona

    NASA Astrophysics Data System (ADS)

    Shafroth, P. B.; Andersen, D. C.; Wilcox, A. C.; Kui, L.; Stella, J. C.

    2013-12-01

    Development of flow prescriptions for environmental purposes along rivers is relatively common, but implementation of these 'environmental flows' occurs infrequently. Implementation is critical for testing hypotheses relating flow regime to biotic response, which ultimately can inform adaptive flow management. We describe the development of flow prescriptions and evaluate responses of riparian vegetation, beaver dams, and associated aquatic habitat to experimental floods and intervening base flows associated with an environmental flow program on the Bill Williams River (BWR), in semiarid Arizona. First, we assessed effects of flow releases between 1993 and 2009 designed to favor the establishment and maintenance of native riparian trees (Populus and Salix) and disfavor an invasive, nonnative shrub (Tamarix spp.) downstream of Alamo Dam on the BWR. Our data are multi-scaled and include a several-decade assessment of changes to major vegetation types based on a time series of aerial photography, an assessment of species composition and abundance sampled in permanent vegetation quadrats, and targeted seedling surveys following experimental floods. Between 1993 and 2009, we observed significant increases in Populus and Salix forests and essentially no change in Tamarix. Experimental floods in 2006 and 2007 resulted in higher mortality of Tamarix seedlings than Salix. These results illustrate the potential for managing streamflow to influence riparian vegetation dynamics, including management of nonnative species. Second, we examined the role of beaver as ecosystem engineers in the BWR and linkages to flow releases between 2004 and 2013. Beaver convert lotic stream habitat to lentic through dam construction and maintenance during low flow periods, and the process is reversed when a flood or other event causes dam failure. We estimated the extent of lotic and beaver-created lentic (beaver pond) habitat along the BWR and related the likelihood of damage or destruction of

  11. Negative plant-soil feedback predicts tree-species relative abundance in a tropical forest.

    PubMed

    Mangan, Scott A; Schnitzer, Stefan A; Herre, Edward A; Mack, Keenan M L; Valencia, Mariana C; Sanchez, Evelyn I; Bever, James D

    2010-08-05

    The accumulation of species-specific enemies around adults is hypothesized to maintain plant diversity by limiting the recruitment of conspecific seedlings relative to heterospecific seedlings. Although previous studies in forested ecosystems have documented patterns consistent with the process of negative feedback, these studies are unable to address which classes of enemies (for example, pathogens, invertebrates, mammals) exhibit species-specific effects strong enough to generate negative feedback, and whether negative feedback at the level of the individual tree is sufficient to influence community-wide forest composition. Here we use fully reciprocal shade-house and field experiments to test whether the performance of conspecific tree seedlings (relative to heterospecific seedlings) is reduced when grown in the presence of enemies associated with adult trees. Both experiments provide strong evidence for negative plant-soil feedback mediated by soil biota. In contrast, above-ground enemies (mammals, foliar herbivores and foliar pathogens) contributed little to negative feedback observed in the field. In both experiments, we found that tree species that showed stronger negative feedback were less common as adults in the forest community, indicating that susceptibility to soil biota may determine species relative abundance in these tropical forests. Finally, our simulation models confirm that the strength of local negative feedback that we measured is sufficient to produce the observed community-wide patterns in tree-species relative abundance. Our findings indicate that plant-soil feedback is an important mechanism that can maintain species diversity and explain patterns of tree-species relative abundance in tropical forests.

  12. Do temperate tree species diversity and identity influence soil microbial community function and composition?

    PubMed

    Khlifa, Rim; Paquette, Alain; Messier, Christian; Reich, Peter B; Munson, Alison D

    2017-10-01

    Studies of biodiversity-ecosystem function in treed ecosystems have generally focused on aboveground functions. This study investigates intertrophic links between tree diversity and soil microbial community function and composition. We examined how microbial communities in surface mineral soil responded to experimental gradients of tree species richness (SR), functional diversity (FD), community-weighted mean trait value (CWM), and tree identity. The site was a 4-year-old common garden experiment near Montreal, Canada, consisting of deciduous and evergreen tree species mixtures. Microbial community composition, community-level physiological profiles, and respiration were evaluated using phospholipid fatty acid (PLFA) analysis and the MicroResp ™ system, respectively. The relationship between tree species richness and glucose-induced respiration (GIR), basal respiration (BR), metabolic quotient (qCO 2 ) followed a positive but saturating shape. Microbial communities associated with species mixtures were more active (basal respiration [BR]), with higher biomass (glucose-induced respiration [GIR]), and used a greater number of carbon sources than monocultures. Communities associated with deciduous tree species used a greater number of carbon sources than those associated with evergreen species, suggesting a greater soil carbon storage capacity. There were no differences in microbial composition (PLFA) between monocultures and SR mixtures. The FD and the CWM of several functional traits affected both BR and GIR. In general, the CWM of traits had stronger effects than did FD, suggesting that certain traits of dominant species have more effect on ecosystem processes than does FD. Both the functions of GIR and BR were positively related to aboveground tree community productivity. Both tree diversity (SR) and identity (species and functional identity-leaf habit) affected soil microbial community respiration, biomass, and composition. For the first time, we identified

  13. Ambrosia Beetle (Coleoptera: Scolytidae) Species, Flight, and Attack on Living Eastern Cottonwood Trees.

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Coyle, D R; D.C. Booth: M.S. Wallace

    2005-12-01

    ABSTRACT In spring 2002, ambrosia beetles (Coleoptera: Scolytidae) infested an intensively managed 22-ha tree plantation on the upper coastal plain of South Carolina. Nearly 3,500 scolytids representing 28 species were captured in ethanol-baited traps from 18 June 2002 to 18 April 2004. More than 88% of total captures were exotic species. Five species [Dryoxylon onoharaensum (Murayama), Euwallacea validus (Eichhoff), Pseudopityophthorus minutissimus (Zimmermann), Xyleborus atratus Eichhoff, and Xyleborus impressus Eichhoff]) were collected in South Carolina for the first time. Of four tree species in the plantation, eastern cottonwood, Populus deltoides Bartram, was the only one attacked, with nearly 40% of themore » trees sustaining ambrosia beetle damage. Clone ST66 sustained more damage than clone S7C15. ST66 trees receiving fertilization were attacked more frequently than trees receiving irrigation, irrigation_fertilization, or controls, although the number of S7C15 trees attacked did not differ among treatments. The study location is near major shipping ports; our results demonstrate the necessity for intensive monitoring programs to determine the arrival, spread, ecology, and impact of exotic scolytids.« less

  14. Regional height-diameter equations for major tree species of southwest Oregon.

    Treesearch

    H. Temesgen; D.W. Hann; V.J. Monleon

    2006-01-01

    Selected tree height and diameter functions were evaluated for their predictive abilities for major tree species of southwest Oregon. The equations included tree diameter alone, or diameter plus alternative measures of stand density and relative position. Two of the base equations were asymptotic functions, and two were exponential functional forms. The inclusion of...

  15. Dynamics of Tree Species Diversity in Unlogged and Selectively Logged Malaysian Forests.

    PubMed

    Shima, Ken; Yamada, Toshihiro; Okuda, Toshinori; Fletcher, Christine; Kassim, Abdul Rahman

    2018-01-18

    Selective logging that is commonly conducted in tropical forests may change tree species diversity. In rarely disturbed tropical forests, locally rare species exhibit higher survival rates. If this non-random process occurs in a logged forest, the forest will rapidly recover its tree species diversity. Here we determined whether a forest in the Pasoh Forest Reserve, Malaysia, which was selectively logged 40 years ago, recovered its original species diversity (species richness and composition). To explore this, we compared the dynamics of secies diversity between unlogged forest plot (18.6 ha) and logged forest plot (5.4 ha). We found that 40 years are not sufficient to recover species diversity after logging. Unlike unlogged forests, tree deaths and recruitments did not contribute to increased diversity in the selectively logged forests. Our results predict that selectively logged forests require a longer time at least than our observing period (40 years) to regain their diversity.

  16. Breeding Bird Community Continues to Colonize Riparian Buffers Ten Years after Harvest

    PubMed Central

    2015-01-01

    Riparian ecosystems integrate aquatic and terrestrial communities and often contain unique assemblages of flora and fauna. Retention of forested buffers along riparian habitats is a commonly employed practice to reduce potential negative effects of land use on aquatic systems. However, very few studies have examined long-term population and community responses to buffers, leading to considerable uncertainty about effectiveness of this practice for achieving conservation and management outcomes. We examined short- (1–2 years) and long-term (~10 years) avian community responses (occupancy and abundance) to riparian buffer prescriptions to clearcut logging silvicultural practices in the Pacific Northwest USA. We used a Before-After-Control-Impact experimental approach and temporally replicated point counts analyzed within a Bayesian framework. Our experimental design consisted of forested control sites with no harvest, sites with relatively narrow (~13m) forested buffers on each side of the stream, and sites with wider (~30m) and more variable width unharvested buffer. Buffer treatments exhibited a 31–44% increase in mean species richness in the post-harvest years, a pattern most evident 10 years post-harvest. Post-harvest, species turnover was much higher on both treatments (63–74%) relative to the controls (29%). We did not find evidence of local extinction for any species but found strong evidence (no overlap in 95% credible intervals) for an increase in site occupancy on both Narrow (short-term: 7%; long-term 29%) and Wide buffers (short-term: 21%; long-term 93%) relative to controls after harvest. We did not find a treatment effect on total avian abundance. When assessing relationships between buffer width and site level abundance of four riparian specialists, we did not find strong evidence of reduced abundance in Narrow or Wide buffers. Silviculture regulations in this region dictate average buffer widths on small and large permanent streams that range

  17. Nutrition facts and limits for micronutrients in tree species used in urban forestry.

    PubMed

    Brun, Flávia G K; Brun, Eleandro J; Gerber, Dionatan; Szymczak, Denise A; Londero, Eduardo K; Meyer, Evandro A; Navroski, Márcio C

    2017-01-01

    There is a huge lack of researches that evaluate the nutritional limits in tree species used in urban forestry, especially in terms of micronutrients. This study aimed to establish limits and range of micronutrients levels for the proper development of tree species utilized in urban forestry. The study was conducted in the city of Santa Maria-RS-Brazil. Through forest inventory, 23 forest species present in urban forest were selected, and 05 vegetative branches of each tree were collected, in which the contents of B, Cu, Fe, Mn and Zn were analyzed. Ranges of micronutrients' contents were developed for class limits criteria. Nutritional problems were detected for B, Cu and Zn in G. robusta and S. cumini, indicating a need of fertilization and management of these trees. The levels of Mn were within an adequate range only for the species C. illinoensis and H. chrysotrichus. The contents of B were higher than the level considered adequate for H. chrysotrichusand M. nigra. The rates of Fe showed high levels for E. japonica, H. chrysotrichusand S. babylonica. The estimated nutritional limits enable a greater control in the classification of the results for each tree species utilized in urban forestry.

  18. [Mahalanobis distance based hyperspectral characteristic discrimination of leaves of different desert tree species].

    PubMed

    Lin, Hai-jun; Zhang, Hui-fang; Gao, Ya-qi; Li, Xia; Yang, Fan; Zhou, Yan-fei

    2014-12-01

    The hyperspectral reflectance of Populus euphratica, Tamarix hispida, Haloxylon ammodendron and Calligonum mongolicum in the lower reaches of Tarim River and Turpan Desert Botanical Garden was measured by using the HR-768 field-portable spectroradiometer. The method of continuum removal, first derivative reflectance and second derivative reflectance were used to deal with the original spectral data of four tree species. The method of Mahalanobis Distance was used to select the bands with significant differences in the original spectral data and transform spectral data to identify the different tree species. The progressive discrimination analyses were used to test the selective bands used to identify different tree species. The results showed that The Mahalanobis Distance method was an effective method in feature band extraction. The bands for identifying different tree species were most near-infrared bands. The recognition accuracy of four methods was 85%, 93.8%, 92.4% and 95.5% respectively. Spectrum transform could improve the recognition accuracy. The recognition accuracy of different research objects and different spectrum transform methods were different. The research provided evidence for desert tree species classification, monitoring biodiversity and the analysis of area in desert by using large scale remote sensing method.

  19. Effect of landscape tree cover, sex and season on the bioaccumulation of persistent organochlorine pesticides in fruit bats of riparian corridors in eastern Mexico.

    PubMed

    Valdespino, Carolina; Sosa, Vinicio J

    2017-05-01

    Riparian forests are recognized as important ecosystems for biodiversity conservation in transformed landscapes. Many animal species that use this type of vegetation facilitate its recovery through pollination and seed dispersal. In landscapes dominated by agrosystems and cattle ranching, persistent organochlorine pesticides (OCPs) in the riparian system may have an effect on the physiology and fitness of animals. In this study, we measured bioaccumulation of OCPs in the most abundant frugivorous bat, Sturnira hondurensis, from the upper part of La Antigua basin, Veracruz, Mexico and, from these data, estimated accumulation by the frugivorous bat community of riparian forests in contrasting, transformed (TL) and forested (FL) landscapes. Concentration of ΣDDT, Σdrines, Σclordano, ΣHCH, Σheptachlor and Σendosulfan was measured by gas-chromatography in 23 female and 33 male adult Sturnira captured during the dry and rainy seasons. Using censored data statistics, we found that the sex of the individual was significant for ΣHCH, and that interactions of landscape type (TL vs. FL) and season (dry vs. wet), and sex and season were significant for Σendosulfan and Σdrines, respectively. Mean ΣDDT (6.86 μg/g) and ΣHCH (28.22 μg/g) concentrations were lower than those reported for frugivorous bats in India but concentrations of Σdrines (13.86 μg/g) were higher than those reported in insectivorous bats. In our study sites, frugivorous bats are bioaccumulating higher amounts of OCPs in TL than in FL. We discuss the potential of this species as a bio-indicator of OCPs contamination in river basins. Copyright © 2017. Published by Elsevier Ltd.

  20. EnviroAtlas - Memphis, TN - 51m Riparian Buffer Vegetated Cover

    EPA Pesticide Factsheets

    This EnviroAtlas dataset describes the percentage of a 51-m riparian buffer that is vegetated. Vegetated cover is defined as Trees & Forest, Grass & Herbaceous, Woody Wetlands, and Emergent Wetlands. There is a potential for decreased water quality in areas where the riparian buffer is less forested. The displayed line represents the center of the analyzed riparian buffer. The water bodies analyzed include hydrologically connected streams, rivers, connectors, reservoirs, lakes/ponds, ice masses, washes, locks, and rapids within the EnviroAtlas community area. This dataset was produced by the US EPA to support research and online mapping activities related to EnviroAtlas. EnviroAtlas (https://www.epa.gov/enviroatlas) allows the user to interact with a web-based, easy-to-use, mapping application to view and analyze multiple ecosystem services for the contiguous United States. The dataset is available as downloadable data (https://edg.epa.gov/data/Public/ORD/EnviroAtlas) or as an EnviroAtlas map service. Additional descriptive information about each attribute in this dataset can be found in its associated EnviroAtlas Fact Sheet (https://www.epa.gov/enviroatlas/enviroatlas-fact-sheets).

  1. EnviroAtlas - Cleveland, OH - 51m Riparian Buffer Vegetated Cover

    EPA Pesticide Factsheets

    This EnviroAtlas dataset describes the percentage of a 51-m riparian buffer that is vegetated. In this community, vegetated cover is defined as Trees & Forest, Grass & Herbaceous, Woody Wetlands, and Emergent Wetlands. There is a potential for decreased water quality in areas where the riparian buffer is less vegetated. The displayed line represents the center of the analyzed riparian buffer. The water bodies analyzed include hydrologically connected streams, rivers, connectors, reservoirs, lakes/ponds, ice masses, washes, locks, and rapids within the EnviroAtlas community area. This dataset was produced by the US EPA to support research and online mapping activities related to EnviroAtlas. EnviroAtlas (https://www.epa.gov/enviroatlas ) allows the user to interact with a web-based, easy-to-use, mapping application to view and analyze multiple ecosystem services for the contiguous United States. The dataset is available as downloadable data (https://edg.epa.gov/data/Public/ORD/EnviroAtlas) or as an EnviroAtlas map service. Additional descriptive information about each attribute in this dataset can be found in its associated EnviroAtlas Fact Sheet (https://www.epa.gov/enviroatlas/enviroatlas-fact-sheets)

  2. EnviroAtlas - Paterson, NJ - 51m Riparian Buffer Vegetated Cover

    EPA Pesticide Factsheets

    This EnviroAtlas dataset describes the percentage of a 51-m riparian buffer that is vegetated. There is a potential for decreased water quality in areas where the riparian buffer is less vegetated. The displayed line represents the center of the analyzed riparian buffer. The water bodies analyzed include hydrologically connected streams, rivers, connectors, reservoirs, lakes/ponds, ice masses, washes, locks, and rapids within the Atlas Area. EnviroAtlas defines vegetated buffer for this community as trees and forest and grass and herbaceous. This dataset was produced by the US EPA to support research and online mapping activities related to EnviroAtlas. EnviroAtlas (https://www.epa.gov/enviroatlas) allows the user to interact with a web-based, easy-to-use, mapping application to view and analyze multiple ecosystem services for the contiguous United States. The dataset is available as downloadable data (https://edg.epa.gov/data/Public/ORD/EnviroAtlas) or as an EnviroAtlas map service. Additional descriptive information about each attribute in this dataset can be found in its associated EnviroAtlas Fact Sheet (https://www.epa.gov/enviroatlas/enviroatlas-fact-sheets).

  3. Delayed effects of flood control on a flood-dependent riparian forest

    USGS Publications Warehouse

    Katz, Gabrielle L.; Friedman, Jonathan M.; Beatty, Susan W.

    2005-01-01

    The downstream effects of dams on riparian forests are strongly mediated by the character and magnitude of adjustment of the fluvial–geomorphic system. To examine the effects of flow regulation on sand-bed streams in eastern Colorado, we studied the riparian forest on three river segments, the dam-regulated South Fork Republican River downstream of Bonny Dam, the unregulated South Fork Republican River upstream of Bonny Dam, and the unregulated Arikaree River. Although Bonny Dam significantly reduced peak and mean discharge downstream since 1951, there was little difference in forest structure between the regulated and unregulated segments. On all river segments, the riparian forest was dominated by the native pioneer tree, Populus deltoides, which became established during a period of channel narrowing beginning after the 1935 flood of record and ending by 1965. The nonnative Elaeagnus angustifolia was present on all river segments, with recruitment ongoing. The lack of contrast in forest structure between regulated and unregulated reaches resulted primarily from the fact that no large floods occurred on any of the study segments since dam construction. Most of the riparian forest in the study area was located on the broad narrowing terrace, which was rarely inundated on the unregulated segments, resulting in little contrast with the regulated segment. A minor dam effect occurred on the small modern floodplain, which was actively disturbed on the unregulated segments, but not on the regulated segments. Although Bonny Dam had the potential to significantly influence downstream riparian ecosystems, this influence had not been expressed, and may never be if a large flood does not occur within the lifetime of the dam. Minor dam effects to riparian systems can be expected downstream of large dams in some settings, including the present example in which there was insufficient time for the dam effects to by fully expressed.

  4. Organic and inorganic nitrogen uptake by 21 dominant tree species in temperate and tropical forests.

    PubMed

    Liu, Min; Li, Changcheng; Xu, Xingliang; Wanek, Wolfgang; Jiang, Ning; Wang, Huimin; Yang, Xiaodong

    2017-11-01

    Evidence shows that many tree species can take up organic nitrogen (N) in the form of free amino acids from soils, but few studies have been conducted to compare organic and inorganic N uptake patterns in temperate and tropical tree species in relation to mycorrhizal status and successional state. We labeled intact tree roots by brief 15N exposures using field hydroponic experiments in a temperate forest and a tropical forest in China. A total of 21 dominant tree species were investigated, 8 in the temperate forest and 13 in the tropical forest. All investigated tree species showed highest uptake rates for NH4+ (ammonium), followed by glycine and NO3- (nitrate). Uptake of NH4+ by temperate trees averaged 12.8 μg N g-1 dry weight (d.w.) root h-1, while those by tropical trees averaged 6.8 μg N g-1 d.w. root h-1. Glycine uptake rates averaged 3.1 μg N g-1 d.w. root h-1 for temperate trees and 2.4 μg N g-1 d.w. root h-1 for tropical trees. NO3- uptake was the lowest (averaging 0.8 μg N g-1 d.w. root h-1 for temperate trees and 1.2 μg N g-1 d.w. root h-1 for tropical trees). Uptake of NH4+ accounted for 76% of the total uptake of all three N forms in the temperate forest and 64% in the tropical forest. Temperate tree species had similar glycine uptake rates as tropical trees, with the contribution being slightly lower (20% in the temperate forest and 23% in the tropical forest). All tree species investigated in the temperate forest were ectomycorrhizal and all species but one in the tropical forest were arbuscular mycorrhizal (AM). Ectomycorrhizal trees showed significantly higher NH4+ and lower NO3- uptake rates than AM trees. Mycorrhizal colonization rates significantly affected uptake rates and contributions of NO3- or NH4+, but depended on forest types. We conclude that tree species in both temperate and tropical forests preferred to take up NH4+, with organic N as the second most important N source. These findings suggest that temperate and tropical forests

  5. Adventitious root formation in tree species: involvement of transcription factors.

    PubMed

    Legué, Valérie; Rigal, Adeline; Bhalerao, Rishikesh P

    2014-06-01

    Adventitious rooting is an essential step in the vegetative propagation of economically important horticultural and woody species. Populus has emerged as an experimental model for studying processes that are important in tree growth and development. It is highly useful for molecular genetic analysis of adventitious roots in trees. In this short review, we will highlight the recent progress made in the identification of transcription factors involved in the control of adventitious rooting in woody species. Their regulation will be discussed. © 2014 Scandinavian Plant Physiology Society.

  6. Challenges of predicting the potential distribution of a slow-spreading invader: a habitat suitability map for an invasive riparian tree

    USGS Publications Warehouse

    Jarnevich, Catherine S.; Reynolds, Lindsay V.

    2011-01-01

    Understanding the potential spread of invasive species is essential for land managers to prevent their establishment and restore impacted habitat. Habitat suitability modeling provides a tool for researchers and managers to understand the potential extent of invasive species spread. Our goal was to use habitat suitability modeling to map potential habitat of the riparian plant invader, Russian olive (Elaeagnus angustifolia). Russian olive has invaded riparian habitat across North America and is continuing to expand its range. We compiled 11 disparate datasets for Russian olive presence locations (n = 1,051 points and 139 polygons) in the western US and used Maximum entropy (Maxent) modeling to develop two habitat suitability maps for Russian olive in the western United States: one with coarse-scale water data and one with fine-scale water data. Our models were able to accurately predict current suitable Russian olive habitat (Coarse model: training AUC = 0.938, test AUC = 0.907; Fine model: training AUC = 0.923, test AUC = 0.885). Distance to water was the most important predictor for Russian olive presence in our coarse-scale water model, but it was only the fifth most important variable in the fine-scale model, suggesting that when water bodies are considered on a fine scale, Russian olive does not necessarily rely on water. Our model predicted that Russian olive has suitable habitat further west from its current distribution, expanding into the west coast and central North America. Our methodology proves useful for identifying potential future areas of invasion. Model results may be influenced by locations of cultivated individuals and sampling bias. Further study is needed to examine the potential for Russian olive to invade beyond its current range. Habitat suitability modeling provides an essential tool for enhancing our understanding of invasive species spread.

  7. In vitro propagation of tropical hardwood tree species — A review (2001-2011)

    Treesearch

    Paula M. Pijut; Rochelle R. Beasley; Shaneka S. Lawson; Kaitlin J. Palla; Micah E. Stevens; Ying Wang

    2012-01-01

    Tropical hardwood tree species are important economically and ecologically, and play a significant role in the biodiversity of plant and animal species within an ecosystem. There are over 600 species of tropical timbers in the world, many of which are commercially valuable in the international trade of plywood, roundwood, sawnwood, and veneer. Many of these tree...

  8. Adaptability of 14 tree species to two hydrol humic latosol soils in Hawaii.

    Treesearch

    Craig O. Whitesell; Jr. Myron O. Ishennrood

    1971-01-01

    Tree species capable of thriving on soils in high rainfall areas are needed in Hawaii for reforestation. The soils are highly leached and infertile.Two native and 12 introduced tree species were planted at two sites to determine adaptability. Survival, growth, vigor, and form were appraised 1 to 7 years after planting. Performance varied-both within and between species...

  9. Management and conservation of tree squirrels: the importance of endemism, species richness, and forest condition

    Treesearch

    John L. Koprowski

    2005-01-01

    Tree squirrels are excellent indicators of forest health yet the taxon is understudied. Most tree squirrels in the Holarctic Region are imperiled with some level of legal protection. The Madrean Archipelago is the epicenter for tree squirrel diversity in North America with 5 endemic species and 2 introduced species. Most species of the region are poorly studied in...

  10. Statistical analysis of texture in trunk images for biometric identification of tree species.

    PubMed

    Bressane, Adriano; Roveda, José A F; Martins, Antônio C G

    2015-04-01

    The identification of tree species is a key step for sustainable management plans of forest resources, as well as for several other applications that are based on such surveys. However, the present available techniques are dependent on the presence of tree structures, such as flowers, fruits, and leaves, limiting the identification process to certain periods of the year. Therefore, this article introduces a study on the application of statistical parameters for texture classification of tree trunk images. For that, 540 samples from five Brazilian native deciduous species were acquired and measures of entropy, uniformity, smoothness, asymmetry (third moment), mean, and standard deviation were obtained from the presented textures. Using a decision tree, a biometric species identification system was constructed and resulted to a 0.84 average precision rate for species classification with 0.83accuracy and 0.79 agreement. Thus, it can be considered that the use of texture presented in trunk images can represent an important advance in tree identification, since the limitations of the current techniques can be overcome.

  11. Tree diversity and species identity effects on soil fungi, protists and animals are context dependent

    PubMed Central

    Tedersoo, Leho; Bahram, Mohammad; Cajthaml, Tomáš; Põlme, Sergei; Hiiesalu, Indrek; Anslan, Sten; Harend, Helery; Buegger, Franz; Pritsch, Karin; Koricheva, Julia; Abarenkov, Kessy

    2016-01-01

    Plant species richness and the presence of certain influential species (sampling effect) drive the stability and functionality of ecosystems as well as primary production and biomass of consumers. However, little is known about these floristic effects on richness and community composition of soil biota in forest habitats owing to methodological constraints. We developed a DNA metabarcoding approach to identify the major eukaryote groups directly from soil with roughly species-level resolution. Using this method, we examined the effects of tree diversity and individual tree species on soil microbial biomass and taxonomic richness of soil biota in two experimental study systems in Finland and Estonia and accounted for edaphic variables and spatial autocorrelation. Our analyses revealed that the effects of tree diversity and individual species on soil biota are largely context dependent. Multiple regression and structural equation modelling suggested that biomass, soil pH, nutrients and tree species directly affect richness of different taxonomic groups. The community composition of most soil organisms was strongly correlated due to similar response to environmental predictors rather than causal relationships. On a local scale, soil resources and tree species have stronger effect on diversity of soil biota than tree species richness per se. PMID:26172210

  12. A merchantable and total height model for tree species in Maine

    Treesearch

    James A. Westfall; Kenneth M. Laustsen

    2006-01-01

    A model for predicting merchantable and total tree height for 18 species groups in Maine is presented. Only tree-level predictor variables are used, so stand-level attributes, such as age and site quality, are not required. A mixed-effects modeling approach accounts for the correlated within-tree measurements. Data-collection protocols encompass situations in which...

  13. Direct vs. Microclimate-Driven Effects of Tree Species Diversity on Litter Decomposition in Young Subtropical Forest Stands.

    PubMed

    Seidelmann, Katrin N; Scherer-Lorenzen, Michael; Niklaus, Pascal A

    2016-01-01

    Effects of tree species diversity on decomposition can operate via a multitude of mechanism, including alterations of microclimate by the forest canopy. Studying such effects in natural settings is complicated by the fact that topography also affects microclimate and thus decomposition, so that effects of diversity are more difficult to isolate. Here, we quantified decomposition rates of standard litter in young subtropical forest stands, separating effects of canopy tree species richness and topography, and quantifying their direct and micro-climate-mediated components. Our litterbag study was carried out at two experimental sites of a biodiversity-ecosystem functioning field experiment in south-east China (BEF-China). The field sites display strong topographical heterogeneity and were planted with tree communities ranging from monocultures to mixtures of 24 native subtropical tree species. Litter bags filled with senescent leaves of three native tree species were placed from Nov. 2011 to Oct. 2012 on 134 plots along the tree species diversity gradient. Topographic features were measured for all and microclimate in a subset of plots. Stand species richness, topography and microclimate explained important fractions of the variations in litter decomposition rates, with diversity and topographic effects in part mediated by microclimatic changes. Tree stands were 2-3 years old, but nevertheless tree species diversity explained more variation (54.3%) in decomposition than topography (7.7%). Tree species richness slowed litter decomposition, an effect that slightly depended on litter species identity. A large part of the variance in decomposition was explained by tree species composition, with the presence of three tree species playing a significant role. Microclimate explained 31.4% of the variance in decomposition, and was related to lower soil moisture. Within this microclimate effect, species diversity (without composition) explained 8.9% and topography 34.4% of

  14. Direct vs. Microclimate-Driven Effects of Tree Species Diversity on Litter Decomposition in Young Subtropical Forest Stands

    PubMed Central

    Seidelmann, Katrin N.; Scherer-Lorenzen, Michael; Niklaus, Pascal A.

    2016-01-01

    Effects of tree species diversity on decomposition can operate via a multitude of mechanism, including alterations of microclimate by the forest canopy. Studying such effects in natural settings is complicated by the fact that topography also affects microclimate and thus decomposition, so that effects of diversity are more difficult to isolate. Here, we quantified decomposition rates of standard litter in young subtropical forest stands, separating effects of canopy tree species richness and topography, and quantifying their direct and micro-climate-mediated components. Our litterbag study was carried out at two experimental sites of a biodiversity-ecosystem functioning field experiment in south-east China (BEF-China). The field sites display strong topographical heterogeneity and were planted with tree communities ranging from monocultures to mixtures of 24 native subtropical tree species. Litter bags filled with senescent leaves of three native tree species were placed from Nov. 2011 to Oct. 2012 on 134 plots along the tree species diversity gradient. Topographic features were measured for all and microclimate in a subset of plots. Stand species richness, topography and microclimate explained important fractions of the variations in litter decomposition rates, with diversity and topographic effects in part mediated by microclimatic changes. Tree stands were 2–3 years old, but nevertheless tree species diversity explained more variation (54.3%) in decomposition than topography (7.7%). Tree species richness slowed litter decomposition, an effect that slightly depended on litter species identity. A large part of the variance in decomposition was explained by tree species composition, with the presence of three tree species playing a significant role. Microclimate explained 31.4% of the variance in decomposition, and was related to lower soil moisture. Within this microclimate effect, species diversity (without composition) explained 8.9% and topography 34.4% of

  15. Tree species diversity mitigates disturbance impacts on the forest carbon cycle.

    PubMed

    Silva Pedro, Mariana; Rammer, Werner; Seidl, Rupert

    2015-03-01

    Biodiversity fosters the functioning and stability of forest ecosystems and, consequently, the provision of crucial ecosystem services that support human well-being and quality of life. In particular, it has been suggested that tree species diversity buffers ecosystems against the impacts of disturbances, a relationship known as the "insurance hypothesis". Natural disturbances have increased across Europe in recent decades and climate change is expected to amplify the frequency and severity of disturbance events. In this context, mitigating disturbance impacts and increasing the resilience of forest ecosystems is of growing importance. We have tested how tree species diversity modulates the impact of disturbance on net primary production and the total carbon stored in living biomass for a temperate forest landscape in Central Europe. Using the simulation model iLand to study the effect of different disturbance regimes on landscapes with varying levels of tree species richness, we found that increasing diversity generally reduces the disturbance impact on carbon storage and uptake, but that this effect weakens or even reverses with successional development. Our simulations indicate a clear positive relationship between diversity and resilience, with more diverse systems experiencing lower disturbance-induced variability in their trajectories of ecosystem functioning. We found that positive effects of tree species diversity are mainly driven by an increase in functional diversity and a modulation of traits related to recolonization and resource usage. The results of our study suggest that increasing tree species diversity could mitigate the effects of intensifying disturbance regimes on ecosystem functioning and improve the robustness of forest carbon storage and the role of forests in climate change mitigation.

  16. Woody riparian vegetation response to different alluvial water table regimes

    USGS Publications Warehouse

    Shafroth, P.B.; Stromberg, J.C.; Patten, D.T.

    2000-01-01

    Woody riparian vegetation in western North American riparian ecosystems is commonly dependent on alluvial groundwater. Various natural and anthropogenic mechanisms can cause groundwater declines that stress riparian vegetation, but little quantitative information exists on the nature of plant response to different magnitudes, rates, and durations of groundwater decline. We observed groundwater dynamics and the response of Populus fremontii, Salix gooddingii, and Tamarix ramosissima saplings at 3 sites between 1995 and 1997 along the Bill Williams River, Arizona. At a site where the lowest observed groundwater level in 1996 (-1.97 m) was 1.11 m lower than that in 1995 (-0.86 m), 92-100% of Populus and Salix saplings died, whereas 0-13% of Tamarix stems died. A site with greater absolute water table depths in 1996 (-2.55 m), but less change from the 1995 condition (0.55 m), showed less Populus and Salix mortality and increased basal area. Excavations of sapling roots suggest that root distribution is related to groundwater history. Therefore, a decline in water table relative to the condition under which roots developed may strand plant roots where they cannot obtain sufficient moisture. Plant response is likely mediated by other factors such as soil texture and stratigraphy, availability of precipitation-derived soil moisture, physiological and morphological adaptations to water stress, and tree age. An understanding of the relationships between water table declines and plant response may enable land and water managers to avoid activities that are likely to stress desirable riparian vegetation.

  17. Responses of tree species to heat waves and extreme heat events.

    PubMed

    Teskey, Robert; Wertin, Timothy; Bauweraerts, Ingvar; Ameye, Maarten; McGuire, Mary Anne; Steppe, Kathy

    2015-09-01

    The number and intensity of heat waves has increased, and this trend is likely to continue throughout the 21st century. Often, heat waves are accompanied by drought conditions. It is projected that the global land area experiencing heat waves will double by 2020, and quadruple by 2040. Extreme heat events can impact a wide variety of tree functions. At the leaf level, photosynthesis is reduced, photooxidative stress increases, leaves abscise and the growth rate of remaining leaves decreases. In some species, stomatal conductance increases at high temperatures, which may be a mechanism for leaf cooling. At the whole plant level, heat stress can decrease growth and shift biomass allocation. When drought stress accompanies heat waves, the negative effects of heat stress are exacerbated and can lead to tree mortality. However, some species exhibit remarkable tolerance to thermal stress. Responses include changes that minimize stress on photosynthesis and reductions in dark respiration. Although there have been few studies to date, there is evidence of within-species genetic variation in thermal tolerance, which could be important to exploit in production forestry systems. Understanding the mechanisms of differing tree responses to extreme temperature events may be critically important for understanding how tree species will be affected by climate change. © 2014 John Wiley & Sons Ltd.

  18. Avian nest box selection and nest success in burned and unburned southwestern riparian forests

    Treesearch

    D. Max Smith; Jeffrey F. Kelly; Deborah M. Finch

    2007-01-01

    Riparian forest communities in the southwestern United States were historically structured by a disturbance regime of annual flooding. In recent decades, however, frequency of flooding has decreased and frequency of wildfires has increased. Riparian forests provide important breeding habitat for a large variety of bird species, and the effects of this altered...

  19. Basal area growth for 15 tropical trees species in Puerto Rico. Forest

    Treesearch

    B. R. Parresol

    1995-01-01

    The tabonuco forest of Puerto Rico support a diverse population of tree species valued for timber, fuel, food, wildlife food and cover, and erosion control among other use. tree basal area growth data spanning 39 years are avaible on 15 species from eigth permanent plots in Luquillo Experimental Forest. The complexity of the rain forest challeges current forest...

  20. Herbs versus Trees: Influences on Teenagers' Knowledge of Plant Species

    ERIC Educational Resources Information Center

    Lückmann, Katrin; Menzel, Susanne

    2014-01-01

    The study reports on species knowledge among German adolescents (n = 507) as: (1) self-assessed evaluation of one's species knowledge; and (2) factual knowledge about popular local herbs and trees. Besides assessing species knowledge, we were interested in whether selected demographic factors, environmental attitude (as measured through the New…

  1. No evidence for consistent long-term growth stimulation of 13 tropical tree species: results from tree-ring analysis.

    PubMed

    Groenendijk, Peter; van der Sleen, Peter; Vlam, Mart; Bunyavejchewin, Sarayudh; Bongers, Frans; Zuidema, Pieter A

    2015-10-01

    The important role of tropical forests in the global carbon cycle makes it imperative to assess changes in their carbon dynamics for accurate projections of future climate-vegetation feedbacks. Forest monitoring studies conducted over the past decades have found evidence for both increasing and decreasing growth rates of tropical forest trees. The limited duration of these studies restrained analyses to decadal scales, and it is still unclear whether growth changes occurred over longer time scales, as would be expected if CO2 -fertilization stimulated tree growth. Furthermore, studies have so far dealt with changes in biomass gain at forest-stand level, but insights into species-specific growth changes - that ultimately determine community-level responses - are lacking. Here, we analyse species-specific growth changes on a centennial scale, using growth data from tree-ring analysis for 13 tree species (~1300 trees), from three sites distributed across the tropics. We used an established (regional curve standardization) and a new (size-class isolation) growth-trend detection method and explicitly assessed the influence of biases on the trend detection. In addition, we assessed whether aggregated trends were present within and across study sites. We found evidence for decreasing growth rates over time for 8-10 species, whereas increases were noted for two species and one showed no trend. Additionally, we found evidence for weak aggregated growth decreases at the site in Thailand and when analysing all sites simultaneously. The observed growth reductions suggest deteriorating growth conditions, perhaps due to warming. However, other causes cannot be excluded, such as recovery from large-scale disturbances or changing forest dynamics. Our findings contrast growth patterns that would be expected if elevated CO2 would stimulate tree growth. These results suggest that commonly assumed growth increases of tropical forests may not occur, which could lead to erroneous

  2. Large wood dynamics and biophysical consequences for riparian forests: A comparison of an unconfined alluvial river in a temperate rainforest and a bedrock confined river in a semi-arid South African savanna.

    NASA Astrophysics Data System (ADS)

    Latterell, J. J.; Pettit, N. E.; Naiman, R. J.

    2005-05-01

    Large wood shapes the geomorphology and ecology of rivers. We determined the origin, distribution, and fate of large wood in two rivers from contrasting environments. The Queets is an unstable temperate, rainforest river running from the Olympic Mountains (USA) through a glacial valley with colossal trees. In most years, the channel erodes a variety of forested landforms which forms jams that sculpt habitats. Many are displaced in a few years. Remaining jams initiate landform development and forest renewal. Thus, wood is stockpiled in the floodplain where it may become buried. Channel movements recapture most logs within 50 years. In contrast, the Sabie is a perennial river running through a confined bedrock channel in a fire-prone semi-arid South African savanna. Riparian trees are relatively small and many sink in water. A recent flood (February 2000) devastated the riparian forest, introducing wood to the channel. Jams formed on toppled trees, transported logs, and bedrock outcrops. Many trees survived and resprouted. Jams facilitated the establishment of woody plant seedlings and the intrusion of fire into riparian areas. Sunken wood formed unique depositional features. The Queets and Sabie rivers are strikingly different systems. However, large wood appears to promote the renewal and development of complex riparian forests in both rivers.

  3. Can nitrogen fertilization aid restoration of mature tree productivity in degraded dryland riverine ecosystems?

    USGS Publications Warehouse

    Andersen, Douglas C.; Adair, Elizabeth Carol; Nelson, Sigfrid Mark; Binkley, Dan

    2014-01-01

    Restoration of riparian forest productivity lost as a consequence of flow regulation is a common management goal in dryland riverine ecosystems. In the northern hemisphere, dryland river floodplain trees often include one or another species of Populus, which are fast-growing, nutrient-demanding trees. Because the trees are phreatophytic in drylands, and have water needs met in whole or in part by a shallow water table, their productivity may be limited by nitrogen (N) availability, which commonly limits primary productivity in mesic environments. We added 20 g N m−2 in a 2-m radius around the base of mature Populus fremontii along each of a regulated and free-flowing river in semiarid northwest Colorado, USA (total n = 42) in order to test whether growth is constrained by low soil N. Twelve years after fertilization, we collected increment cores from these and matched unfertilized trees and compared radial growth ratios (growth in the 3-year post-fertilization period/growth in the 3-year pre-fertilization period) in paired t tests. We expected a higher mean ratio in the fertilized trees. No effect from fertilization was detected, nor was a trend evident on either river. An alternative test using analysis of covariance (ANCOVA) produced a similar result. Our results underscore the need for additional assessment of which and to what extent factors other than water control dryland riverine productivity. Positive confirmation of adequate soil nutrients at these and other dryland riparian sites would bolster the argument that flow management is necessary and sufficient to maximize productivity and enhance resilience in affected desert riverine forests.

  4. Identification and Mapping of Tree Species in Urban Areas Using WORLDVIEW-2 Imagery

    NASA Astrophysics Data System (ADS)

    Mustafa, Y. T.; Habeeb, H. N.; Stein, A.; Sulaiman, F. Y.

    2015-10-01

    Monitoring and mapping of urban trees are essential to provide urban forestry authorities with timely and consistent information. Modern techniques increasingly facilitate these tasks, but require the development of semi-automatic tree detection and classification methods. In this article, we propose an approach to delineate and map the crown of 15 tree species in the city of Duhok, Kurdistan Region of Iraq using WorldView-2 (WV-2) imagery. A tree crown object is identified first and is subsequently delineated as an image object (IO) using vegetation indices and texture measurements. Next, three classification methods: Maximum Likelihood, Neural Network, and Support Vector Machine were used to classify IOs using selected IO features. The best results are obtained with Support Vector Machine classification that gives the best map of urban tree species in Duhok. The overall accuracy was between 60.93% to 88.92% and κ-coefficient was between 0.57 to 0.75. We conclude that fifteen tree species were identified and mapped at a satisfactory accuracy in urban areas of this study.

  5. Seeing the Forest through the Trees: Citizen Scientists Provide Critical Data to Refine Aboveground Carbon Estimates in Restored Riparian Forests

    NASA Astrophysics Data System (ADS)

    Viers, J. H.

    2013-12-01

    Integrating citizen scientists into ecological informatics research can be difficult due to limited opportunities for meaningful engagement given vast data streams. This is particularly true for analysis of remotely sensed data, which are increasingly being used to quantify ecosystem services over space and time, and to understand how land uses deliver differing values to humans and thus inform choices about future human actions. Carbon storage and sequestration are such ecosystem services, and recent environmental policy advances in California (i.e., AB 32) have resulted in a nascent carbon market that is helping fuel the restoration of riparian forests in agricultural landscapes. Methods to inventory and monitor aboveground carbon for market accounting are increasingly relying on hyperspatial remotely sensed data, particularly the use of light detection and ranging (LiDAR) technologies, to estimate biomass. Because airborne discrete return LiDAR can inexpensively capture vegetation structural differences at high spatial resolution (< 1 m) over large areas (> 1000 ha), its use is rapidly increasing, resulting in vast stores of point cloud and derived surface raster data. While established algorithms can quantify forest canopy structure efficiently, the highly complex nature of native riparian forests can result in highly uncertain estimates of biomass due to differences in composition (e.g., species richness, age class) and structure (e.g., stem density). This study presents the comparative results of standing carbon estimates refined with field data collected by citizen scientists at three different sites, each capturing a range of agricultural, remnant forest, and restored forest cover types. These citizen science data resolve uncertainty in composition and structure, and improve allometric scaling models of biomass and thus estimates of aboveground carbon. Results indicate that agricultural land and horticulturally restored riparian forests store similar

  6. Seasonal estimates of riparian evapotranspiration using remote and in situ measurements

    USGS Publications Warehouse

    Goodrich, D.C.; Scott, R.; Qi, J.; Goff, B.; Unkrich, C.L.; Moran, M.S.; Williams, D.; Schaeffer, S.; Snyder, K.; MacNish, R.; Maddock, T.; Pool, D.; Chehbouni, A.; Cooper, D.I.; Eichinger, W.E.; Shuttleworth, W.J.; Kerr, Y.; Marsett, R.; Ni, W.

    2000-01-01

    In many semi-arid basins during extended periods when surface snowmelt or storm runoff is absent, groundwater constitutes the primary water source for human habitation, agriculture and riparian ecosystems. Utilizing regional groundwater models in the management of these water resources requires accurate estimates of basin boundary conditions. A critical groundwater boundary condition that is closely coupled to atmospheric processes and is typically known with little certainty is seasonal riparian evapotranspiration ET). This quantity can often be a significant factor in the basin water balance in semi-arid regions yet is very difficult to estimate over a large area. Better understanding and quantification of seasonal, large-area riparian ET is a primary objective of the Semi-Arid Land-Surface-Atmosphere (SALSA) Program. To address this objective, a series of interdisciplinary experimental Campaigns were conducted in 1997 in the San Pedro Basin in southeastern Arizona. The riparian system in this basin is primarily made up of three vegetation communities: mesquite (Prosopis velutina), sacaton grasses (Sporobolus wrightii), and a cottonwood (Populus fremontii)/willow (Salix goodingii) forest gallery. Micrometeorological measurement techniques were used to estimate ET from the mesquite and grasses. These techniques could not be utilized to estimate fluxes from the cottonwood/willow (C/W) forest gallery due to the height (20-30 m) and non-uniform linear nature of the forest gallery. Short-term (2-4 days) sap flux measurements were made to estimate canopy transpiration over several periods of the riparian growing season. Simultaneous remote sensing measurements were used to spatially extrapolate tree and stand measurements. Scaled C/W stand level sap flux estimates were utilized to calibrate a Penman-Monteith model to enable temporal extrapolation between Synoptic measurement periods. With this model and set of measurements, seasonal riparian vegetation water use

  7. A weighted-means ordination of riparian birds in southeastern Wyoming

    Treesearch

    Deborah M. Finch

    1985-01-01

    Variation among habitat associations of 31 riparian bird species in southeastern Wyoming was analyzed using a weighted-means ordination. Three principal components explained 86.7% of the variation among habitat associations of bird species. The components showed high positive loadings for variables associated with canopy, shrub size, and vegetation height.

  8. Survey for least bell's vireo in riparian habitat on Vandenberg Air Force Base, Santa Barbara County, California

    NASA Technical Reports Server (NTRS)

    Breininger, David R.

    1988-01-01

    The least bell's vireo (Vireo bellii pusillus) was listed in 1986 as an endangered species by the U.S. Fish and Wildlife Service. Because of the possibility of the species existing on Vandenberg Air Force Base (VAFB), this survey was conducted to determine if they exist, and if so to prepare a distribution map of the species on the base. Major riparian areas were surveyed on foot for 17 days in April, May, and July 1987. No least bell's vireo were sighted; based on past studies, it is unlikely that there is a significant population on VAFB. There are, however, at least 13 other species of special concern that inhabit VAFB riparian woodlands. Most of these species have declined along the south coast of Santa Barbara County, and many have declined in much of the southern half of California. Riparian areas on VAFB are an important environmental resource for the southern half of California; many of these areas, however, show signs of degradation.

  9. Relative Nature of Wetlands: Riparian and Vegetational Considerations

    Treesearch

    Peter S. Bennett; Michael R. Kunzmann; Roy R. Johnson

    1989-01-01

    Riparian ecosystems have been divided into three basic types; hydroriparian, mesoriparian, and xeroriparian associated in the desert lowlands with perennial, intermittent, and ephemeral water respectively. Floral species associated with these ecosystems can be divided into four categories; obligate, preferential, facultative, and nonriparian. Additionally, various site...

  10. Enhancing moist forest restoration opportunities in riparian systems

    Treesearch

    Theresa Benavidez Jain; Russell T. Graham

    2004-01-01

    In northern Rocky Mountain moist forests, riparian systems contain many attributes that create unique biophysical conditions that alter disturbances and microenvironments; thus creating distinct forest structures, species composition, and management challenges. For example, browsing, limited opening size, competition from surrounding ground vegetation, high soil...

  11. Spatial and temporal variability of canopy microclimate in a Sierra Nevada riparian forest

    Treesearch

    T. Rambo; M. North

    2008-01-01

    Past riparian microclimate studies have measured changes horizontally from streams, but not vertically through the forest canopy. We recorded temperature and relative humidity for a year along a two-dimensional grid of 24 data-loggers arrayed up to 40 m height in four trees 2 - 30 m slope distance from a perennial second order stream in...

  12. Use of fish community data to evaluate restoration success of a riparian stream

    Treesearch

    Michael H. Paller; Marcel J.M. Reichert; John M. Dean; John C. Seigle

    2000-01-01

    From 1985 to 1988, stream and riparian habitats in Pen branch and Four Mile branch began recovering from deforestation caused by the previous release of hot water from nuclear reactors. The Pen branch corridor was replanted with wetland trees in 1995 to expedite recovery and restore the Pen branch ecosystem. Pen branch, Four Mile branch, and two relatively undisturbed...

  13. Arbuscular mycorrhizal fungal diversity and natural enemies promote coexistence of tropical tree species

    Treesearch

    Benedicte Bachelot; María Uriarte; Krista L. McGuire; Jill Thompson; Jess Zimmerman

    2017-01-01

    Negative population feedbacks mediated by natural enemies can promote species coexistence at the community scale through disproportionate mortality of numerically dominant (common) tree species. Simultaneously, associations with arbuscular mycorrhizal fungi (AMF) can result in positive effects on tree populations. Coupling data on seedling foliar damage from herbivores...

  14. Soil magnetic susceptibility reflects soil moisture regimes and the adaptability of tree species to these regimes

    USGS Publications Warehouse

    Wang, J.-S.; Grimley, D.A.; Xu, C.; Dawson, J.O.

    2008-01-01

    Flooded, saturated or poorly drained soils are frequently anaerobic, leading to dissolution of the strongly magnetic minerals, magnetite and maghemite, and a corresponding decrease in soil magnetic susceptibility (MS). In this study of five temperate deciduous forests in east-central Illinois, USA, mean surface soil MS was significantly higher adjacent to upland tree species (31 ?? 10-5 SI) than adjacent to floodplain or lowland tree species (17 ?? 10-5 SI), when comparing regional soils with similar parent material of loessal silt. Although the sites differ in average soil MS for each tree species, the relative order of soil MS means for associated tree species at different locations is similar. Lowland tree species, Celtis occidentalis L., Ulmus americana L., Acer saccharinum L., Carya laciniosa (Michx. f.) Loud., and Fraxinus pennsylvanica Marsh. were associated with the lowest measured soil MS mean values overall and at each site. Tree species' flood tolerance rankings increased significantly, as soil MS values declined, the published rankings having significant correlations with soil MS values for the same species groups. The three published classifications of tree species' flood tolerance were significantly correlated with associated soil MS values at all sites, but most strongly at Allerton Park, the site with the widest range of soil drainage classes and MS values. Using soil MS measurements in forests with soil parent material containing similar initial levels of strongly magnetic minerals can provide a simple, rapid and quantitative method to classify soils according to hydric regimes, including dry conditions, and associated plant composition. Soil MS values thus have the capacity to quantify the continuum of hydric tolerances of tree species and guide tree species selection for reforestation. ?? 2007 Elsevier B.V. All rights reserved.

  15. The influence of large wood accumulations on riparian seed bank diversity

    NASA Astrophysics Data System (ADS)

    Osei, N. A.

    2012-04-01

    Little is known about the structure and complexity of seed bank within the riparian corridor and the how large wood accumulations contribute to riparian seed bank diversity. This study aimed to examine and quantify seed bank assemblage and diversity along the undisturbed riparian corridor of the Highland Water, a second order lowland stream draining the New Forest. Seed bank samples were collected from five riparian corridor microhabitats namely mid-channel bars, floodplains, bare banks, banks adjacent large wood accumulations and within large wood accumulations that differed in their hydrologic connectivity with the river. Descriptive statistics and ordination methods applied to the floristic and sediment data sets indicates that sediment organic matter content, species richness and proportions of functional types distinctly differed among the riparian microhabitats types but there was no difference in viable seed densities. Banks adjacent large wood accumulations were the most floristically diverse and rich in organic matter with mid-channel bars exhibiting the reverse. This was due to the ability of large wood accumulations to buffer varying magnitudes of physical gradients and sort seeds and sediments, therefore altering the character of bare banks. This study not only strengthen the evidence that riparian corridors exhibit elevated spatial sediment and vegetation heterogeneity but also demonstrates the importance of large wood accumulation as habitat modifiers, ecosystem engineers and conservation sink for moisture, organic matter and seeds, resources essential for riparian vegetation conservation, recovery and restoration efforts.

  16. Monitoring the vegetation resources in riparian areas

    Treesearch

    Alma H. Winward

    2000-01-01

    This document provides information on three sampling methods used to inventory and monitor the vegetation resources in riparian areas. The vegetation cross-section method evaluates the health of vegetation across the valley floor. The greenline method provides a measurement of the streamside vegetation. The woody species regeneration method measures the density and age...

  17. Hide and go seek with temperature signals of Northeastern US Tree Species

    NASA Astrophysics Data System (ADS)

    Alexander, M. R.; Pederson, N.; Bishop, D. A.; Pearl, J. K.; Anchukaitis, K. J.

    2017-12-01

    Improving reconstructions of past climate is vital in providing long-term context for regional climate change. There have been only two published reconstructions of past temperatures in the northeastern U.S. (NEUS) since the 1980s, one based on Picea rubens, and one out in 2017 based upon Chamaecyparis thyoides (Atlantic white cedar; AWC). Because increased species diversity generally improves dendrohydroclimatic reconstructions and both Picea rubens and AWC have limitations as paleoproxies due to land-use and air pollution, we conducted a series of tests to ask, "Does species diversity improve reconstructions of temperature history in the northeastern United States?" The first two tests were performed on AWC and then a network of AWC and Picea rubens. Subsequent tests added groups of species or genera from a network of 230 tree-ring chronologies beginning with those having the strongest relation between warming temperatures and increased growth. PC1 of the AWC test represented 40% of the variance and showed a significant positive relation with winter temperature (r = 0.38). As additional species were included, the "winter temperature PC" accounted for less of the overall variance, ranging from 26% of the variance in test 2 to 5% by test 5. AWC is swamped by the hydroclimatic signal that dominates our network. Populations of species such as Fagus grandifolia, Fraxinus nigra, Juniperus virginiana, Liriodendron tulipifera, Pinus rigida, and Pinus strobus from our network loaded strongest with AWC on the winter temperature PC. Including multiple species accounted for almost 20% more variance in the winter temperature record than AWC alone. Although drought is a dominating influence of tree growth in this region, our results suggest that winter temperatures are recorded within NEUS tree rings. Increasing the species diversity of tree proxies has the potential for improving reconstruction of paleotemperatures in regions lacking latitudinal or altitudinal tree lines

  18. Similarities in riparian bird communities among elevational zones in southeastern Wyoming

    Treesearch

    Deborah M. Finch

    1986-01-01

    I examined trends in bird species richness and overall bird abundance in riparian habitats among elevations varying from 6740 ft. to 9800 ft. in southeastern Wyoming. Bird species diversity ranged from a low of three bird species and 23 pairs in subalpine shrub willow habitat to a maximum of 21 species and 101 pairs in lowland cottonwood habitat. Bird communities were...

  19. Tree species preferences of foraging songbirds during spring migration in floodplain forests of the Upper Mississippi River

    USGS Publications Warehouse

    Kirsch, Eileen M.; Wellik, Mike J.

    2017-01-01

    Floodplain forest of the Upper Mississippi River is important for songbirds during spring migration. However, the altered hydrology of this system and spread of reed canary grass (Phalaris arundinacea) and emerald ash borer (Agrilus planipennis) threaten tree diversity and long-term sustainability of this forest. We estimated tree preferences of songbirds during spring migration 2010–2013 to help guide management decisions that promote tree diversity and forest sustainability and to evaluate yearly variation in tree selection. We used the point center-quarter method to assess relative availability of tree species and tallied bird foraging observations on tree species as well as recording the phenophase of used trees on five 40 ha plots of contiguous floodplain forest between La Crosse, Wisconsin and New Albin, Iowa, from 15 April through 1 June. We quantified bird preferences by comparing proportional use of tree species by each bird species to estimates of tree species availability for all 4 y and for each year separately. Species that breed locally preferred silver maple (Acer saccharinum), which is dominant in this forest. The common transient migrant species and the suite of 17 transient wood warbler species preferred hackberry (Celtis occidentalis) and oaks (Quercus spp.), which are limited to higher elevations on the floodplain. We observed earlier leaf development the warm springs of 2010 and 2012 and later leaf development the cold springs of 2011 and 2013. Yellow-rumped Warbler (Setophaga coronata), American Redstart (S. ruticilla), Warbling Vireo (Vireo gilvus) and Baltimore Oriole (Icterus galbula), and the suite of transient migrant wood warblers spread their foraging efforts among tree species in colder springs and were more selective in warmer springs. All three of the important tree species are not regenerating well on the UMR and widespread die-off of silver maple is possible in 50 y without large scale management.

  20. Allometric biomass equations for 12 tree species in coniferous and broadleaved mixed forests, Northeastern China.

    PubMed

    He, Huaijiang; Zhang, Chunyu; Zhao, Xiuhai; Fousseni, Folega; Wang, Jinsong; Dai, Haijun; Yang, Song; Zuo, Qiang

    2018-01-01

    Understanding forest carbon budget and dynamics for sustainable resource management and ecosystem functions requires quantification of above- and below-ground biomass at individual tree species and stand levels. In this study, a total of 122 trees (9-12 per species) were destructively sampled to determine above- and below-ground biomass of 12 tree species (Acer mandshuricum, Acer mono, Betula platyphylla, Carpinus cordata, Fraxinus mandshurica, Juglans mandshurica, Maackia amurensis, P. koraiensis, Populus ussuriensis, Quercus mongolica, Tilia amurensis and Ulmus japonica) in coniferous and broadleaved mixed forests of Northeastern China, an area of the largest natural forest in the country. Biomass allocation was examined and biomass models were developed using diameter as independent variable for individual tree species and all species combined. The results showed that the largest biomass allocation of all species combined was on stems (57.1%), followed by coarse root (21.3%), branch (18.7%), and foliage (2.9%). The log-transformed model was statistically significant for all biomass components, although predicting power was higher for species-specific models than for all species combined, general biomass models, and higher for stems, roots, above-ground biomass, and total tree biomass than for branch and foliage biomass. These findings supplement the previous studies on this forest type by additional sample trees, species and locations, and support biomass research on forest carbon budget and dynamics by management activities such as thinning and harvesting in the northeastern part of China.

  1. Allometric biomass equations for 12 tree species in coniferous and broadleaved mixed forests, Northeastern China

    PubMed Central

    He, Huaijiang; Zhao, Xiuhai; Fousseni, Folega; Wang, Jinsong; Dai, Haijun; Yang, Song; Zuo, Qiang

    2018-01-01

    Understanding forest carbon budget and dynamics for sustainable resource management and ecosystem functions requires quantification of above- and below-ground biomass at individual tree species and stand levels. In this study, a total of 122 trees (9–12 per species) were destructively sampled to determine above- and below-ground biomass of 12 tree species (Acer mandshuricum, Acer mono, Betula platyphylla, Carpinus cordata, Fraxinus mandshurica, Juglans mandshurica, Maackia amurensis, P. koraiensis, Populus ussuriensis, Quercus mongolica, Tilia amurensis and Ulmus japonica) in coniferous and broadleaved mixed forests of Northeastern China, an area of the largest natural forest in the country. Biomass allocation was examined and biomass models were developed using diameter as independent variable for individual tree species and all species combined. The results showed that the largest biomass allocation of all species combined was on stems (57.1%), followed by coarse root (21.3%), branch (18.7%), and foliage (2.9%). The log-transformed model was statistically significant for all biomass components, although predicting power was higher for species-specific models than for all species combined, general biomass models, and higher for stems, roots, above-ground biomass, and total tree biomass than for branch and foliage biomass. These findings supplement the previous studies on this forest type by additional sample trees, species and locations, and support biomass research on forest carbon budget and dynamics by management activities such as thinning and harvesting in the northeastern part of China. PMID:29351291

  2. Riparian Wetlands: Mapping

    EPA Science Inventory

    Riparian wetlands are critical systems that perform functions and provide services disproportionate to their extent in the landscape. Mapping wetlands allows for better planning, management, and modeling, but riparian wetlands present several challenges to effective mapping due t...

  3. Basic principles and ecological consequences of changing water regimes: riparian plant communities.

    PubMed

    Nilsson, Christer; Svedmark, Magnus

    2002-10-01

    Recent research has emphasized the importance of riparian ecosystems as centers of biodiversity and links between terrestrial and aquatic systems. Riparian ecosystems also belong among the environments that are most disturbed by humans and are in need of restoration to maintain biodiversity and ecological integrity. To facilitate the completion of this task, researchers have an important function to communicate their knowledge to policy-makers and managers. This article presents some fundamental qualities of riparian systems, articulated as three basic principles. The basic principles proposed are: (1) The flow regime determines the successional evolution of riparian plant communities and ecological processes. (2) The riparian corridor serves as a pathway for redistribution of organic and inorganic material that influences plant communities along rivers. (3) The riparian system is a transition zone between land and water ecosystems and is disproportionately plant species-rich when compared to surrounding ecosystems. Translating these principles into management directives requires more information about how much water a river needs and when and how, i.e., flow variables described by magnitude, frequency, timing, duration, and rate of change. It also requires information about how various groups of organisms are affected by habitat fragmentation, especially in terms of their dispersal. Finally, it requires information about how effects of hydrologic alterations vary between different types of riparian systems and with the location within the watershed.

  4. Local biotic adaptation of trees and shrubs to plant neighbors

    USGS Publications Warehouse

    Grady, Kevin C.; Wood, Troy E.; Kolb, Thomas E.; Hersch-Green, Erika; Shuster, Stephen M.; Gehring, Catherine A.; Hart, Stephen C.; Allan, Gerard J.; Whitham, Thomas G.

    2017-01-01

    Natural selection as a result of plant–plant interactions can lead to local biotic adaptation. This may occur where species frequently interact and compete intensely for resources limiting growth, survival, and reproduction. Selection is demonstrated by comparing a genotype interacting with con- or hetero-specific sympatric neighbor genotypes with a shared site-level history (derived from the same source location), to the same genotype interacting with foreign neighbor genotypes (from different sources). Better genotype performance in sympatric than allopatric neighborhoods provides evidence of local biotic adaptation. This pattern might be explained by selection to avoid competition by shifting resource niches (differentiation) or by interactions benefitting one or more members (facilitation). We tested for local biotic adaptation among two riparian trees, Populus fremontii and Salix gooddingii, and the shrub Salix exigua by transplanting replicated genotypes from multiple source locations to a 17 000 tree common garden with sympatric and allopatric treatments along the Colorado River in California. Three major patterns were observed: 1) across species, 62 of 88 genotypes grew faster with sympatric neighbors than allopatric neighbors; 2) these growth rates, on an individual tree basis, were 44, 15 and 33% higher in sympatric than allopatric treatments for P. fremontii, S. exigua and S. gooddingii, respectively, and; 3) survivorship was higher in sympatric treatments for P. fremontiiand S. exigua. These results support the view that fitness of foundation species supporting diverse communities and dominating ecosystem processes is determined by adaptive interactions among multiple plant species with the outcome that performance depends on the genetic identity of plant neighbors. The occurrence of evolution in a plant-community context for trees and shrubs builds on ecological evolutionary research that has demonstrated co-evolution among herbaceous taxa, and

  5. Marine Riparian Vegetation Communities of Puget Sound

    DTIC Science & Technology

    2007-02-01

    species . In areas of frequent disturbance, early successional trees , such as red alder and maple, dominated coastal forests. Douglas fir is currently...sea level to the mountain tops), forest types are broken into zones, represented by the dominant canopy ( tree ) species , or cli- max community, with...Within each zone, there is also vertical stratification of vegetation types, including dominant canopy tree species , understory trees and shrubs, and

  6. [Reproductive phenology of tree species in the Tenosique tropical forest, Tabasco, Mexico].

    PubMed

    Ochoa-Gaona, Susana; Hernández, Isidro Pérez; de Jong, Bernardus H J

    2008-06-01

    Between August 2003 and August 2005 we registered the flowering and fruiting of 75 tree species (341 individual trees) in a tropical rain forest at Tenosique, Tabasco, Mexico. Monthly we checked five transects (500 m long; 5 m wide). To test the homogeneity of flowering and fruiting during the year, and between adjacent months, we applied a chi2 test. The flowering was bimodal, with a highest peak in March and April, coinciding with the dry season, and a second lower peak in July when precipitation is relatively low. The highest number of fruiting tree species occur between May and July, with its peak in May. Each of the most common botanical families showed a particular phenological pattern. Monthly rainfall and the number of species flowering or fruiting were not significantly correlated. This means that trees are flowering and fruiting all year long, with seasonal increases of both phenological phenomena in the dryer periods. We conclude that phenological patterns vary between individuals and between years and are not seasonally correlated. The data we generated are relevant to program the best periods of seed collections according to individual or groups of species, as part of forest management and conservation practices.

  7. Diversification rates and species richness across the Tree of Life

    PubMed Central

    Scholl, Joshua P.

    2016-01-01

    Species richness varies dramatically among clades across the Tree of Life, by over a million-fold in some cases (e.g. placozoans versus arthropods). Two major explanations for differences in richness among clades are the clade-age hypothesis (i.e. species-rich clades are older) and the diversification-rate hypothesis (i.e. species-rich clades diversify more rapidly, where diversification rate is the net balance of speciation and extinction over time). Here, we examine patterns of variation in diversification rates across the Tree of Life. We address how rates vary across higher taxa, whether rates within higher taxa are related to the subclades within them, and how diversification rates of clades are related to their species richness. We find substantial variation in diversification rates, with rates in plants nearly twice as high as in animals, and rates in some eukaryotes approximately 10-fold faster than prokaryotes. Rates for each kingdom-level clade are then significantly related to the subclades within them. Although caution is needed when interpreting relationships between diversification rates and richness, a positive relationship between the two is not inevitable. We find that variation in diversification rates seems to explain most variation in richness among clades across the Tree of Life, in contrast to the conclusions of previous studies. PMID:27605507

  8. Detecting mismatches of bird migration stopover and tree phenology in response to changing climate

    USGS Publications Warehouse

    Kellermann, Jherime L.; van Riper, Charles

    2015-01-01

    Migratory birds exploit seasonal variation in resources across latitudes, timing migration to coincide with the phenology of food at stopover sites. Differential responses to climate in phenology across trophic levels can result in phenological mismatch; however, detecting mismatch is sensitive to methodology. We examined patterns of migrant abundance and tree flowering, phenological mismatch, and the influence of climate during spring migration from 2009 to 2011 across five habitat types of the Madrean Sky Islands in southeastern Arizona, USA. We used two metrics to assess phenological mismatch: synchrony and overlap. We also examined whether phenological overlap declined with increasing difference in mean event date of phenophases. Migrant abundance and tree flowering generally increased with minimum spring temperature but depended on annual climate by habitat interactions. Migrant abundance was lowest and flowering was highest under cold, snowy conditions in high elevation montane conifer habitat while bird abundance was greatest and flowering was lowest in low elevation riparian habitat under the driest conditions. Phenological synchrony and overlap were unique and complementary metrics and should both be used when assessing mismatch. Overlap declined due to asynchronous phenologies but also due to reduced migrant abundance or flowering when synchrony was actually maintained. Overlap declined with increasing difference in event date and this trend was strongest in riparian areas. Montane habitat specialists may be at greatest risk of mismatch while riparian habitat could provide refugia during dry years for phenotypically plastic species. Interannual climate patterns that we observed match climate change projections for the arid southwest, altering stopover habitat condition.

  9. Long-term changes of tree species composition and distribution in Korean mountain forests

    NASA Astrophysics Data System (ADS)

    Lee, Boknam; Lee, Hoontaek; Cho, Sunhee; Yoon, Jongguk; Park, Jongyoung; Kim, Hyun Seok

    2017-04-01

    Long-term changes in the abundance and distribution of tree species in the temperate forests of South Korea remain poorly understood. We investigated how tree species composition and stand distribution change across temperate mountainous forests using the species composition and DBH size collected over the past 15 years (1998-2012) across 130 permanent forest plots of 0.1 ha in Jiri and Baegun mountains in South Korea. The overall net change of tree communities over the years showed positive in terms of stand density, richness, diversity, and evenness. At the species level, the change of relative species composition has been led by intermediate and shade-tolerant species, such as Quercus mongolica, Carpinus laxiflora, Quercus serrate, Quercus variabilis, Styrax japonicus, Lindera erythrocarpa, and Pinus densiflora and was categorized into five species communities, representing gradual increase or decrease, establishment, extinction, fluctuation of species population. At the community level, the change in species composition appeared to have consistent and directional patterns of increase in the annual rate of change in the mean species traits including species density, pole growth rate, adult growth rate, and adult stature. Based on the additive models, the distribution of species diversity was significantly related to topographical variables including elevation, latitude, longitude, slope, topographic wetness index, and curvature where elevation was the most significant driver, followed by latitude and longitude. However, the change in distribution of species diversity was only significantly influenced by latitude and longitude. This is the first study to reveal the long-term dynamics of change in tree species composition and distribution, which are important to broaden our understanding of temperate mountainous forest ecosystem in South Korea.

  10. EnviroAtlas - New York, NY - 51m Riparian Buffer Vegetated Cover

    EPA Pesticide Factsheets

    This EnviroAtlas dataset describes the percentage of a 51-m riparian buffer that is vegetated. In this community, vegetated cover is defined as Trees & Forest and Grass & Herbaceous. There is a potential for decreased water quality in areas where the riparian buffer is less vegetated. The displayed line represents the center of the analyzed riparian buffer. The water bodies analyzed include hydrologically connected streams, rivers, connectors, reservoirs, lakes/ponds, ice masses, washes, locks, and rapids within the EnviroAtlas community area. This dataset was produced by the US EPA to support research and online mapping activities related to EnviroAtlas. EnviroAtlas (https://www.epa.gov/enviroatlas) allows the user to interact with a web-based, easy-to-use, mapping application to view and analyze multiple ecosystem services for the contiguous United States. The dataset is available as downloadable data (https://edg.epa.gov/data/Public/ORD/EnviroAtlas) or as an EnviroAtlas map service. Additional descriptive information about each attribute in this dataset can be found in its associated EnviroAtlas Fact Sheet (https://www.epa.gov/enviroatlas/enviroatlas-fact-sheets)

  11. An empirical evaluation of two-stage species tree inference strategies using a multilocus dataset from North American pines

    PubMed Central

    2014-01-01

    Background As it becomes increasingly possible to obtain DNA sequences of orthologous genes from diverse sets of taxa, species trees are frequently being inferred from multilocus data. However, the behavior of many methods for performing this inference has remained largely unexplored. Some methods have been proven to be consistent given certain evolutionary models, whereas others rely on criteria that, although appropriate for many parameter values, have peculiar zones of the parameter space in which they fail to converge on the correct estimate as data sets increase in size. Results Here, using North American pines, we empirically evaluate the behavior of 24 strategies for species tree inference using three alternative outgroups (72 strategies total). The data consist of 120 individuals sampled in eight ingroup species from subsection Strobus and three outgroup species from subsection Gerardianae, spanning ∼47 kilobases of sequence at 121 loci. Each “strategy” for inferring species trees consists of three features: a species tree construction method, a gene tree inference method, and a choice of outgroup. We use multivariate analysis techniques such as principal components analysis and hierarchical clustering to identify tree characteristics that are robustly observed across strategies, as well as to identify groups of strategies that produce trees with similar features. We find that strategies that construct species trees using only topological information cluster together and that strategies that use additional non-topological information (e.g., branch lengths) also cluster together. Strategies that utilize more than one individual within a species to infer gene trees tend to produce estimates of species trees that contain clades present in trees estimated by other strategies. Strategies that use the minimize-deep-coalescences criterion to construct species trees tend to produce species tree estimates that contain clades that are not present in trees

  12. An empirical evaluation of two-stage species tree inference strategies using a multilocus dataset from North American pines.

    PubMed

    DeGiorgio, Michael; Syring, John; Eckert, Andrew J; Liston, Aaron; Cronn, Richard; Neale, David B; Rosenberg, Noah A

    2014-03-29

    As it becomes increasingly possible to obtain DNA sequences of orthologous genes from diverse sets of taxa, species trees are frequently being inferred from multilocus data. However, the behavior of many methods for performing this inference has remained largely unexplored. Some methods have been proven to be consistent given certain evolutionary models, whereas others rely on criteria that, although appropriate for many parameter values, have peculiar zones of the parameter space in which they fail to converge on the correct estimate as data sets increase in size. Here, using North American pines, we empirically evaluate the behavior of 24 strategies for species tree inference using three alternative outgroups (72 strategies total). The data consist of 120 individuals sampled in eight ingroup species from subsection Strobus and three outgroup species from subsection Gerardianae, spanning ∼47 kilobases of sequence at 121 loci. Each "strategy" for inferring species trees consists of three features: a species tree construction method, a gene tree inference method, and a choice of outgroup. We use multivariate analysis techniques such as principal components analysis and hierarchical clustering to identify tree characteristics that are robustly observed across strategies, as well as to identify groups of strategies that produce trees with similar features. We find that strategies that construct species trees using only topological information cluster together and that strategies that use additional non-topological information (e.g., branch lengths) also cluster together. Strategies that utilize more than one individual within a species to infer gene trees tend to produce estimates of species trees that contain clades present in trees estimated by other strategies. Strategies that use the minimize-deep-coalescences criterion to construct species trees tend to produce species tree estimates that contain clades that are not present in trees estimated by the

  13. SimPhy: Phylogenomic Simulation of Gene, Locus, and Species Trees

    PubMed Central

    Mallo, Diego; De Oliveira Martins, Leonardo; Posada, David

    2016-01-01

    We present a fast and flexible software package—SimPhy—for the simulation of multiple gene families evolving under incomplete lineage sorting, gene duplication and loss, horizontal gene transfer—all three potentially leading to species tree/gene tree discordance—and gene conversion. SimPhy implements a hierarchical phylogenetic model in which the evolution of species, locus, and gene trees is governed by global and local parameters (e.g., genome-wide, species-specific, locus-specific), that can be fixed or be sampled from a priori statistical distributions. SimPhy also incorporates comprehensive models of substitution rate variation among lineages (uncorrelated relaxed clocks) and the capability of simulating partitioned nucleotide, codon, and protein multilocus sequence alignments under a plethora of substitution models using the program INDELible. We validate SimPhy's output using theoretical expectations and other programs, and show that it scales extremely well with complex models and/or large trees, being an order of magnitude faster than the most similar program (DLCoal-Sim). In addition, we demonstrate how SimPhy can be useful to understand interactions among different evolutionary processes, conducting a simulation study to characterize the systematic overestimation of the duplication time when using standard reconciliation methods. SimPhy is available at https://github.com/adamallo/SimPhy, where users can find the source code, precompiled executables, a detailed manual and example cases. PMID:26526427

  14. RIP-ET: A riparian evapotranspiration package for MODFLOW-2005

    USGS Publications Warehouse

    Maddock, Thomas; Baird, Kathryn J.; Hanson, R.T.; Schmid, Wolfgang; Ajami, Hoori

    2012-01-01

    A new evapotranspiration package for the U.S. Geological Survey's groundwater-flow model, MODFLOW, is documented. The Riparian Evapotranspiration Package (RIP-ET) provides flexibility in simulating riparian and wetland transpiration not provided by the Evapotranspiration (EVT) or Segmented Function Evapotranspiration (ETS1) Packages for MODFLOW 2005. This report describes how the RIP-ET package was conceptualized and provides input instructions, listings and explanations of the source code, and an example. Traditional approaches to modeling evapotranspiration (ET) processes assume a piecewise linear relationship between ET flux and hydraulic head. The RIP-ET replaces this traditional relationship with a segmented, nonlinear dimensionless curve that reflects the eco-physiology of riparian and wetland ecosystems. Evapotranspiration losses from these ecosystems are dependent not only on hydraulic head, but on the plant types present. User-defined plant functional groups (PFGs) are used to elucidate the interaction between plant transpiration and groundwater conditions. Five generalized plant functional groups based on transpiration rates, plant rooting depth, and water tolerance ranges are presented: obligate wetland, shallow-rooted riparian, deep-rooted riparian, transitional riparian and bare ground/open water. Plant functional groups can be further divided into subgroups (PFSGs) based on plant size, density or other characteristics. The RIP-ET allows for partial habitat coverage and mixtures of plant functional subgroups to be present in a single model cell. RIP-ET also distinguishes between plant transpiration and bare-ground evaporation. Habitat areas are designated by polygons; each polygon can contain a mixture of PFSGs and bare ground, and is assigned a surface elevation. This process requires a determination of fractional coverage for each of the plant functional subgroups present in a polygon to account for the mixture of coverage types and resulting

  15. Tree cover and species composition effects on academic performance of primary school students.

    PubMed

    Sivarajah, Sivajanani; Smith, Sandy M; Thomas, Sean C

    2018-01-01

    Human exposure to green space and vegetation is widely recognized to result in physical and mental health benefits; however, to date, the specific effects of tree cover, diversity, and species composition on student academic performance have not been investigated. We compiled standardized performance scores in Grades 3 and 6 for the collective student body in 387 schools across the Toronto District School Board (TDSB), and examined variation in relation to tree cover, tree diversity, and tree species composition based on comprehensive inventories of trees on school properties combined with aerial-photo-based assessments of tree cover. Analyses accounted for variation due to socioeconomic factors using the learning opportunity index (LOI), a regional composite index of external challenges to learning that incorporates income and other factors, such as students with English as a second language. As expected, LOI had the greatest influence on student academic performance; however, the proportion of tree cover, as distinct from other types of "green space" such as grass, was found to be a significant positive predictor of student performance, accounting for 13% of the variance explained in a statistical model predicting mean student performance assessments. The effects of tree cover and species composition were most pronounced in schools that showed the highest level of external challenges, suggesting the importance of urban forestry investments in these schools.

  16. Tree cover and species composition effects on academic performance of primary school students

    PubMed Central

    Smith, Sandy M.; Thomas, Sean C.

    2018-01-01

    Human exposure to green space and vegetation is widely recognized to result in physical and mental health benefits; however, to date, the specific effects of tree cover, diversity, and species composition on student academic performance have not been investigated. We compiled standardized performance scores in Grades 3 and 6 for the collective student body in 387 schools across the Toronto District School Board (TDSB), and examined variation in relation to tree cover, tree diversity, and tree species composition based on comprehensive inventories of trees on school properties combined with aerial-photo-based assessments of tree cover. Analyses accounted for variation due to socioeconomic factors using the learning opportunity index (LOI), a regional composite index of external challenges to learning that incorporates income and other factors, such as students with English as a second language. As expected, LOI had the greatest influence on student academic performance; however, the proportion of tree cover, as distinct from other types of “green space” such as grass, was found to be a significant positive predictor of student performance, accounting for 13% of the variance explained in a statistical model predicting mean student performance assessments. The effects of tree cover and species composition were most pronounced in schools that showed the highest level of external challenges, suggesting the importance of urban forestry investments in these schools. PMID:29474503

  17. Quantitative metrics for assessing predicted climate change pressure on North American tree species

    Treesearch

    Kevin M. Potter; William W. Hargrove

    2013-01-01

    Changing climate may pose a threat to forest tree species, forcing three potential population-level responses: toleration/adaptation, movement to suitable environmental conditions, or local extirpation. Assessments that prioritize and classify tree species for management and conservation activities in the face of climate change will need to incorporate estimates of the...

  18. Tree species composition affects the abundance of rowan (Sorbus aucuparia L.) in urban forests in Finland.

    PubMed

    Hamberg, Leena; Lehvävirta, Susanna; Kotze, D Johan; Heikkinen, Juha

    2015-03-15

    Recent studies have shown a considerable increase in the abundance of rowan (Sorbus aucuparia) saplings in urban forests in Finland, yet the reasons for this increase are not well understood. Here we investigated whether canopy cover or tree species composition, i.e., the basal areas of different tree species in Norway spruce dominated urban forests, affects the abundances of rowan seedlings, saplings and trees. Altogether 24 urban forest patches were investigated. We sampled the number of rowan and other saplings, and calculated the basal areas of trees. We showed that rowan abundance was affected by tree species composition. The basal area of rowan trees (≥ 5 cm in diameter at breast height, dbh) decreased with increasing basal area of Norway spruce, while the cover of rowan seedlings increased with an increase in Norway spruce basal area. However, a decrease in the abundance of birch (Betula pendula) and an increase in the broad-leaved tree group (Acer platanoides, Alnus glutinosa, Alnus incana, Amelanchier spicata, Prunus padus, Quercus robur, Rhamnus frangula and Salix caprea) coincided with a decreasing number of rowans. Furthermore, rowan saplings were scarce in the vicinity of mature rowan trees. Although it seems that tree species composition has an effect on rowan, the relationship between rowan saplings and mature trees is complex, and therefore we conclude that regulating tree species composition is not an easy way to keep rowan thickets under control in urban forests in Finland. Copyright © 2015 Elsevier Ltd. All rights reserved.

  19. Operational Tree Species Mapping in a Diverse Tropical Forest with Airborne Imaging Spectroscopy.

    PubMed

    Baldeck, Claire A; Asner, Gregory P; Martin, Robin E; Anderson, Christopher B; Knapp, David E; Kellner, James R; Wright, S Joseph

    2015-01-01

    Remote identification and mapping of canopy tree species can contribute valuable information towards our understanding of ecosystem biodiversity and function over large spatial scales. However, the extreme challenges posed by highly diverse, closed-canopy tropical forests have prevented automated remote species mapping of non-flowering tree crowns in these ecosystems. We set out to identify individuals of three focal canopy tree species amongst a diverse background of tree and liana species on Barro Colorado Island, Panama, using airborne imaging spectroscopy data. First, we compared two leading single-class classification methods--binary support vector machine (SVM) and biased SVM--for their performance in identifying pixels of a single focal species. From this comparison we determined that biased SVM was more precise and created a multi-species classification model by combining the three biased SVM models. This model was applied to the imagery to identify pixels belonging to the three focal species and the prediction results were then processed to create a map of focal species crown objects. Crown-level cross-validation of the training data indicated that the multi-species classification model had pixel-level producer's accuracies of 94-97% for the three focal species, and field validation of the predicted crown objects indicated that these had user's accuracies of 94-100%. Our results demonstrate the ability of high spatial and spectral resolution remote sensing to accurately detect non-flowering crowns of focal species within a diverse tropical forest. We attribute the success of our model to recent classification and mapping techniques adapted to species detection in diverse closed-canopy forests, which can pave the way for remote species mapping in a wider variety of ecosystems.

  20. Habitat use and habitat overlap of riparian birds in three elevational zones

    Treesearch

    Deborah M. Finch

    1989-01-01

    I examined patterns of variance in habitat use and habitat overlap in 20 breeding bird species found along a riparian vegetational gradient in southeastern Wyoming to test whether habitat use in species differed (1) from availability of random habitat resources, (2) among elevational zones, and (3) between species that inhabited only one zone and species that occupied...