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Sample records for river california usa

  1. Increasing summer river discharge in southern California, USA, linked to urbanization

    NASA Astrophysics Data System (ADS)

    Townsend-Small, Amy; Pataki, Diane E.; Liu, Hongxing; Li, Zhaofu; Wu, Qiusheng; Thomas, Benjamin

    2013-09-01

    southern California relies heavily on imported water for domestic use. A synthesis of river discharge data in this region reveals that summer (June, July, and August) river discharge in watersheds that have at least 50% urban, suburban, and/or commercial land cover has increased by 250% or more over the past half-century, without any substantial precipitation during these months. Total annual discharge in the Los Angeles River has also increased at levels up to several hundred percent. Three factors likely contribute to our observations: (1) increased groundwater recharge rates from leaking water pipelines, (2) inputs of treated wastewater into streams and rivers, and (3) increased runoff or recharge due to over-irrigation of ornamental landscaping. In the southwestern United States, water importation consumes large amounts of energy and contributes to decline of river flows in source regions. Here we show that water importation also increases river flows in urban areas.

  2. Evaluation of sources and loading of pesticides to the Sacramento River, California, USA, during a storm event of winter 2005.

    PubMed

    Guo, Lei; Kelley, Kevin; Goh, Kean S

    2007-11-01

    A monitoring study was conducted in the tributaries and main stem of the Sacramento River, California, USA, during the storm event of January 26 to February 1, 2005. The purpose of the study was to evaluate the sources and loading of pesticides in the Sacramento River watershed during the winter storm season. A total of 26 pesticides or pesticide degradates were analyzed, among which five pesticides and one triazine degradate were detected. Diuron, diazinon, and simazine were found in all streams with a total load of 110.4, 15.4, and 15.7 kg, respectively, in the Sacramento River over the single storm event. Bromacil, hexazinone, and the triazine degradate diaminochlorotriazine were only detected in two smaller drainage canals with a load ranged from 0.25 to 7 kg. The major source of pesticides detected in the main stem Sacramento River was from the most upstream subbasin, the Sacramento River above Colusa, where detected pesticides either exceeded or were close to those at the main outlet of the Sacramento River at Alamar Marina. The higher precipitation in this subbasin was partly responsible for the greater contribution of pesticides observed. Diazinon was the only pesticide with concentrations above water quality criteria, indicating that additional mitigation measures may be needed to reduce its movement to surface water. PMID:17941734

  3. Influences of the unsaturated, saturated, and riparian zones on the transport of nitrate near the Merced River, California, USA

    USGS Publications Warehouse

    Domagalski, J.L.; Phillips, S.P.; Bayless, E.R.; Zamora, C.; Kendall, C.; Wildman, R.A.; Hering, J.G.

    2008-01-01

    Transport and transformation of nitrate was evaluated along a 1-km groundwater transect from an almond orchard to the Merced River, California, USA, within an irrigated agricultural setting. As indicated by measurements of pore-water nitrate and modeling using the root zone water quality model, about 63% of the applied nitrogen was transported through a 6.5-m unsaturated zone. Transport times from recharge locations to the edge of a riparian zone ranged from approximately 6 months to greater than 100 years. This allowed for partial denitrification in horizons having mildly reducing conditions, and essentially no denitrification in horizons with oxidizing conditions. Transport times across a 50-100-m-wide riparian zone of less than a year to over 6 years and more strongly reducing conditions resulted in greater rates of denitrification. Isotopic measurements and concentrations of excess N2 in water were indicative of denitrification with the highest rates below the Merced River. Discharge of water and nitrate into the river was dependent on gradients driven by irrigation or river stage. The results suggest that the assimilative capacity for nitrate of the groundwater system, and particularly the riverbed, is limiting the nitrate load to the Merced River in the study area. ?? Springer-Verlag 2007.

  4. Influences of the unsaturated, saturated, and riparian zones on the transport of nitrate near the Merced River, California, USA

    NASA Astrophysics Data System (ADS)

    Domagalski, Joseph L.; Phillips, Steven P.; Bayless, E. Randall; Zamora, Celia; Kendall, Carol; Wildman, Richard A.; Hering, Janet G.

    2008-06-01

    Transport and transformation of nitrate was evaluated along a 1-km groundwater transect from an almond orchard to the Merced River, California, USA, within an irrigated agricultural setting. As indicated by measurements of pore-water nitrate and modeling using the root zone water quality model, about 63% of the applied nitrogen was transported through a 6.5-m unsaturated zone. Transport times from recharge locations to the edge of a riparian zone ranged from approximately 6 months to greater than 100 years. This allowed for partial denitrification in horizons having mildly reducing conditions, and essentially no denitrification in horizons with oxidizing conditions. Transport times across a 50-100-m-wide riparian zone of less than a year to over 6 years and more strongly reducing conditions resulted in greater rates of denitrification. Isotopic measurements and concentrations of excess N2 in water were indicative of denitrification with the highest rates below the Merced River. Discharge of water and nitrate into the river was dependent on gradients driven by irrigation or river stage. The results suggest that the assimilative capacity for nitrate of the groundwater system, and particularly the riverbed, is limiting the nitrate load to the Merced River in the study area.

  5. Mercury concentrations and loads in a large river system tributary to San Francisco Bay, California, USA

    USGS Publications Warehouse

    David, N.; McKee, L.J.; Black, F.J.; Flegal, A.R.; Conaway, C.H.; Schoellhamer, D.H.; Ganju, N.K.

    2009-01-01

    In order to estimate total mercury (HgT) loads entering San Francisco Bay, USA, via the Sacramento-San Joaquin River system, unfiltered water samples were collected between January 2002 and January 2006 during high flow events and analyzed for HgT. Unfiltered HgT concentrations ranged from 3.2 to 75 ng/L and showed a strong correlation (r2 = 0.8, p < 0.001, n = 78) to suspended sediment concentrations (SSC). During infrequent large floods, HgT concentrations relative to SSC were approximately twice as high as observed during smaller floods. This difference indicates the transport of more Hg-contaminated particles during high discharge events. Daily HgT loads in the Sacramento-San Joaquin River at Mallard Island ranged from below the limit of detection to 35 kg. Annual HgT loads varied from 61 ?? 22 kg (n = 5) in water year (WY) 2002 to 470 ?? 170 kg (n = 25) in WY 2006. The data collected will assist in understanding the long-term recovery of San Francisco Bay from Hg contamination and in implementing the Hg total maximum daily load, the long-term cleanup plan for Hg in the Bay. ?? 2009 SETAC.

  6. Behaviour of wintering Tundra Swans Cygnus columbianus columbianus at the Eel River delta and Humboldt Bay, California, USA

    USGS Publications Warehouse

    Black, Jeffrey M.; Gress, Carol; Byers, Jacob W.; Jennings, Emily; Ely, Craig

    2010-01-01

    Tundra Swan Cygnus columbianus columbinanus phenology and behaviour at the Eel River delta and southern Humboldt Bay in northern California, USA, is described. Counts made each January from 1963 onwards peaked at 1,502 swans in 1988. Monthly counts recorded during the 2006/07 and 2008/09 winters peaked in February, at 1,033 and 772 swans respectively. Swans roosted on ephemeral ponds at the Humboldt Bay National Wildlife Refuge, on ephemeral ponds within grassland pastures in the vicinity of the Refuge, and perhaps also used the Eel River as a roost. Flights between Refuge roosts and the pastures and ponds occurred in the two hours after sunrise and before dark. In winters 2008/09 and 2009/10, the percentage of cygnets in the flocks was 10.6% and 21.4% respectively, and increased to =31% cygnets each year after most swans had departed from the area in March. Average brood size in 2009/10 was 2.1 cygnets. Daily activities consisted of foraging (44.9% of activities recorded), comfort behaviour (22.1%), locomotion (16.2%) and vigilance (15.5%). Eight neck-collared swans identified in the wintering flock were marked at four locations in different parts of Alaska, up to 1,300 km apart.

  7. The western pond turtle (Clemmys marmorata) in the Mojave River, California, USA: Highly adapted survivor or tenuous relict?

    USGS Publications Warehouse

    Lovich, J.; Meyer, K.

    2002-01-01

    Aspects of the ecology of populations of the western pond turtle Clemmys marmorata were investigated in the Mojave River of the central Mojave Desert, California, U.S.A. One population occupied man-made ponds and the other occurred in natural ponds in the flood plain of the Mojave River. Both habitats are severely degraded as a result of ground water depletion from human activities along the river and one is infested with the exotic shrub saltcedar Tamarix ramosissima. Mean female carapace length (CL) was significantly greater (14.4 cm) than that of males (13.7 cm). Live juveniles were not detected during the period of study. Shelled eggs were visible in X-radiographs from 26 May to 14 July. Mean clutch size was 4.46 and ranged from 3 to 6 eggs. Clutch size did not vary between 1998 and 1999 but was significantly correlated with CL for both years combined, increasing at the rate of 0.548 eggs/cm CL. Gravid female CL ranged from 13.3-16.0 cm. Some females nested in both years. Mean X-ray egg width (21.8 mm) was not significantly correlated with CL or clutch size. X-ray egg width differed more among clutches than within, whether including CL as a co-variate or not. Nesting migrations occurred from 6 June to 8 July with minimum round trip distances ranging from 17.5-585 m with a mean of 195 m. Mean estimated time of departure as measured at the drift fence was 18:13. Most females returned to the ponds in the early morning. Nesting migrations required females to be out of the water for estimated periods of 0.83 to 86 h. The destination of nesting females was typically fluvial sand bars in the channel of the dry riverbed. Overall, the ecology of C. marmorata in the Mojave River is very similar to that reported for populations in less severe habitats along the west coast of the United States. Notable exceptions include long nesting migrations to sandbars in the dry river channel, a possible result of human modifications to the environment, and an apparent lack of

  8. Reach-scale channel sensitivity to multiple human activities and natural events: Lower Santa Clara River, California, USA

    NASA Astrophysics Data System (ADS)

    Downs, Peter W.; Dusterhoff, Scott R.; Sears, William A.

    2013-05-01

    Understanding the cumulative impact of natural and human influences on the sensitivity of channel morphodynamics, a relative measure between the drivers for change and the magnitude of channel response, requires an approach that accommodates spatial and temporal variability in the suite of primary stressors. Multiple historical data sources were assembled to provide a reach-scale analysis of the lower Santa Clara River (LSCR) in Ventura County, California, USA. Sediment supply is naturally high due to tectonic activity, earthquake-generated landslides, wildfires, and high magnitude flow events during El Niño years. Somewhat typically for the region, the catchment has been subject to four reasonably distinct land use and resource management combinations since European-American settlement. When combined with analysis of channel morphological response (quantifiable since ca. 1930), reach-scale and temporal differences in channel sensitivity become apparent. Downstream reaches have incised on average 2.4 m and become narrower by almost 50% with changes focused in a period of highly sensitive response after about 1950 followed by forced insensitivity caused by structural flood embankments and a significant grade control structure. In contrast, the middle reaches have been responsive but are morphologically resilient, and the upstream reaches show a mildly sensitive aggradational trend. Superimposing the natural and human drivers for change reveals that large scale stressors (related to ranching and irrigation) have been replaced over time by a suite of stressors operating at multiple spatial scales. Lower reaches have been sensitive primarily to 'local' scale impacts (urban growth, flood control, and aggregate mining) whereas, upstream, catchment-scale influences still prevail (including flow regulation and climate-driven sediment supply factors). These factors illustrate the complexity inherent to cumulative impact assessment in fluvial systems, provide evidence for a

  9. Evaluation of a floating fish guidance structure at a hydrodynamically complex river junction in the Sacramento–San Joaquin River Delta, California, USA

    USGS Publications Warehouse

    Romine, Jason G.; Perry, Russell W.; Pope, Adam C; Stumpner, Paul; Liedtke, Theresa L.; Kumagai, Kevin K; Reeves, Ryan L

    2016-01-01

    Survival of out-migrating juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Sacramento–San Joaquin River delta, California, USA, varies by migration route. Survival of salmonids that enter the interior and southern Delta can be as low as half that of salmonids that remain in the main-stem Sacramento River. Reducing entrainment into the higher-mortality routes, such as Georgiana Slough, should increase overall survival. In spring 2014, a floating fish-guidance structure (FFGS) designed to reduce entrainment into Georgiana Slough was deployed just upstream of the Georgiana Slough divergence. We used acoustic telemetry to evaluate the effect of the FFGS on Chinook entrainment to Georgiana Slough. At intermediate discharge (200–400 m3 s–1), entrainment into Georgiana Slough was five percentage points lower when the FFGS was in the on state (19.1% on; 23.9% off). At higher discharge (>400 m3 s–1), entrainment was higher when the FFGS was in the on state (19.3% on; 9.7% off), and at lower discharge (0–200 m3 s–1) entrainment was lower when the FFGS was in the on state (43.7% on; 47.3% off). We found that discharge, cross-stream fish position, time of day, and proportion of flow remaining in the Sacramento River contributed to the probability of being entrained to Georgiana Slough.

  10. A legacy of change: The lower Colorado River, Arizona-California-Nevada, USA, and Sonora-Baja California Norte, Mexico

    USGS Publications Warehouse

    Mueller, G.A.; Marsh, P.C.; Minckley, W.L.

    2005-01-01

    The lower Colorado is among the most regulated rivers in the world. It ranks as the fifth largest river in volume in the coterminous United States, but its flow is fully allocated and no longer reaches the sea. Lower basin reservoirs flood nearly one third of the river channel and store 2 years of annual flow. Diverted water irrigates 1.5 million ha of cropland and provides water for industry and domestic use by 22 million people in the southwestern United States and northern Mexico. The native fish community of the lower Colorado River was among the most unique in the world, and the main stem was home to nine freshwater species, all of which were endemic to the basin. Today, five are extirpated, seven are federally endangered, and three are being reintroduced through stocking. Decline of the native fauna is attributed to predation by nonnative fishes and physical habitat degradation. Nearly 80 alien species have been introduced, and more than 20 now are common. These nonnative species thrived in modified habitats, where they largely eliminated the native kinds. As a result, the lower Colorado River has the dubious distinction of being among the few major rivers of the world with an entirely introduced fish fauna. ?? 2005 by the American Fisheries Society.

  11. Biogenic polycyclic aromatic hydrocarbons in sediments of the San Joaquin River in California (USA), and current paradigms on their formation.

    PubMed

    Wakeham, Stuart G; Canuel, Elizabeth A

    2016-06-01

    Biogenic perylene and higher plant pentacyclic triterpenoid-derived alkylated and partially aromatized tetra- and pentacyclic derivatives of chrysene (3,4,7-trimethyl- and 3,3,7-trimethyl-1,2,3,4-tetrahydrochrysene, THC) and picene (1,2,9-trimethyl- and 2,2,9-trimethyl-1,2,3,4-tetrahydropicene, THP) were two- to four-fold more abundant than pyrogenic PAH in two sediment cores from the San Joaquin River in Northern California (USA). In a core from Venice Cut (VC), located in the river, PAH concentrations varied little downcore and the whole-core PAH concentration (biogenics + pyrogenics) was 250.6 ± 73.7 ng g(-1) dw; biogenic PAH constituted 67 ± 4 % of total PAH. THC were 26 ± 9 % of total biogenic PAH, THP were 36 ± 7 %, and perylene was 38 ± 7 %. PAH distributions in a core from Franks Tract (FT), a former wetland that was converted to an agricultural tract in the late 1800s and flooded in 1938, were more variable. Surface sediments were dominated by pyrogenic PAH so that biogenic PAH were only ~30 % of total PAH. Deeper in the core, biogenic PAH constituted 60-93 % of total PAH; THC, THP and perylene were 31 ± 28 %, 24 ± 32 %, and 45 ± 36 % of biogenic PAH. At 100-103 cm depth, THP constituted 80 % of biogenic PAH and at 120-123 cm perylene was 95 % of biogenic PAH. Current concepts related to precursors and transformation processes responsible for the diagenetic generation of perylene and triterpenoid-derived PAH are discussed. Distributions of biogenic PAH in VC and FT sediments suggest that they may not form diagenetically within these sediments but rather might be delivered pre-formed from the river's watershed. PMID:26403247

  12. Mercury concentrations and loads in a large river system tributary to San Francisco Bay, California, U.S.A.

    PubMed

    David, Nicole; McKee, Lester J; Black, Frank J; Flegal, A Russell; Conaway, Christopher H; Schoellhamer, David H; Ganju, Neil K

    2009-10-01

    In order to estimate total mercury (HgT) loads entering San Francisco Bay, U.S.A., via the Sacramento-San Joaquin River system, unfiltered water samples were collected between January 2002 and January 2006 during high flow events and analyzed for HgT. Unfiltered HgT concentrations ranged from 3.2 to 75 ng/L and showed a strong correlation (r2 = 0.8, p < 0.001, n=78) to suspended sediment concentrations (SSC). During infrequent large floods, HgT concentrations relative to SSC were approximately twice as high as observed during smaller floods. This difference indicates the transport of more Hg-contaminated particles during high discharge events. Daily HgT loads in the Sacramento-San Joaquin River at Mallard Island ranged from below the limit of detection to 35 kg. Annual HgT loads varied from 61 +/- 22 kg (n=5) in water year (WY) 2002 to 470 +/- 170 kg (n=25) in WY 2006. The data collected will assist in understanding the long-term recovery of San Francisco Bay from Hg contamination and in implementing the Hg total maximum daily load, the long-term cleanup plan for Hg in the Bay. PMID:19499967

  13. Water Quality Assessment of the Los Angeles River Watershed, California, USA in Wet and Dry Weather Periods

    NASA Astrophysics Data System (ADS)

    Rezaie Boroon, M. H.; Von L Coo, C.

    2015-12-01

    The purpose of this study is to identify sources of potential pollutants and characterize urban water quality along the Los Angeles River from its head to the mouth during dry and wet weather periods. Los Angeles (LA) River flows through heavily populated urbanized area in the Los Angeles downtown. The LA River is an effluent-dominated water body during the dry season. The three waste water treatment plants (WWTP) including the Tillman, Burbank, and Glendale discharge the majority of the volume flowing in the LA River during the dry and wet period. The concentration values (ppm) for anions in the dry season ranging 5.5-16,027 (Cl), 0-1.0 (F), 0-21(NO3), 0-1.6 (PO4), and 13.3-2,312 (SO4); whereas the values (ppm) for anions in the wet season ranging 3.4-5,860 (Cl), 0-0.66 (F), 0-17 (NO3), 0-0.67 (PO4), 7.9- 745 (SO4). Dry season concentrations values for trace metals were obtained with values (ppb) ranging 0.9-10 (Ni), 0.8-62 (Zn), 1-4 (As), 0-1 (Pb) and 0-3 (Se). As for wet season trace metals (ppb) ranging 0.001-0.008 (Ni), 0.000001-0.038 (Zn), 0.0016-0.016 (As), 0.00099-0.0058 (Pb), 0.000001-0.0093 (Se). Higher concentrations values during the dry period in the LA River watershed may be attributed to the three WWTPs discharge (75% of the volume of water flowing in the LA River). In water-limited areas such as the Los Angeles basin, urban runoff is a water resource that could enhance restricted water supplies and to enhance localized renewable groundwater resources, thus an assessment of this precious water resource is important for local city and regulatory organizations. In water-limited areas such as the LA basin, urban runoff is a water resource that could enhance restricted water supplies and groundwater resources, thus an assessment of this precious water resource is important for local regulatory organizations.

  14. Using 10Be erosion rates and fluvial channel morphology to constrain fault throw rates in the southwestern Sacramento River Valley, California, USA

    NASA Astrophysics Data System (ADS)

    Cyr, A. J.

    2013-12-01

    The Sacramento - San Joaquin River Delta, California, USA, is a critical region for California water resources, agriculture, and threatened or endangered species. This landscape is affected by an extensive set of levees that enclose artificial islands created for agricultural use. In addition to their importance for sustaining agriculture, this levee system also supports extensive transport and power transmission infrastructure and urban/suburban development. These levees are susceptible to damage from even moderate ground shaking by either a large earthquake on one of the high-activity faults in the nearby San Francisco Bay region, or even a moderate earthquake on one of the low-activity faults in the Delta region itself. However, despite this danger the earthquake hazards in this region are poorly constrained due to our lack of understanding of faults in and near the Delta region. As part of an effort to better constrain the seismic hazard associated with known, but poorly constrained, faults in the region, a geomorphic analysis of the Dunnigan Hills, northwest of Woodland, CA, is being combined with cosmogenic 10Be catchment-averaged erosion rates. The Dunnigan Hills are a low-relief (maximum elevation 87 m) landscape generated by fault-bend folding above the west-vergent Sweitzer reverse fault that soles into a blind east-vergent reverse fault. These faults have been imaged by seismic reflection data, and local microseismicity indicates that this system is actively propagating to the east. However, the throw rates on the faults in this system remain unconstrained, despite the potential for significant shaking such as that experienced in the nearby April, 1892 earthquake sequence between Winters and Vacaville, Ca, ~25 km to the south, which has been estimated at magnitude 6.0 or greater. Geomorphic and cosmogenic 10Be analyses from 12 catchments draining the eastern flank of the Dunnigan Hills will be used to infer vertical rock uplift rates to better constrain

  15. Erosion Characteristics and Horizontal Variability for Small Erosion Depths in the Sacramento - San Joaquin River Delta, California, USA

    NASA Astrophysics Data System (ADS)

    Schoellhamer, D. H.; Manning, A. J.; Work, P. A.

    2015-12-01

    Cohesive sediment in the Sacramento-San Joaquin River Delta affects pelagic fish habitat, contaminant transport, and marsh accretion. Observations of suspended-sediment concentration in the delta indicate that about 0.05 to 0.20 kg/m2 are eroded from the bed during a tidal cycle. If erosion is horizontally uniform, the erosion depth is about 30 to 150 microns, the typical range in diameter of suspended flocs. Application of an erosion microcosm produces similarly small erosion depths. In addition, core erodibility in the microcosm calculated with a horizontally homogeneous model increases with depth, contrary to expectations for a consolidating bed, possibly because the eroding surface area increases as applied shear stress increases. Thus, field observations and microcosm experiments, combined with visual observation of horizontally varying biota and texture at the surface of sediment cores, indicate that a conceptual model of erosion that includes horizontally varying properties may be more appropriate than assuming horizontally homogeneous erosive properties. To test this hypothesis, we collected five cores and measured the horizontal variability of shear strength within each core in the top 5.08 cm with a shear vane. Small tubes built by a freshwater worm and macroalgae were observed on the surface of all cores. The shear vane was inserted into the sediment until the top of the vane was at the top of the sediment, torque was applied to the vane until the sediment failed and the vane rotated, and the corresponding dial reading in Nm was recorded. The dial reading was assumed to be proportional to the surface strength. The horizontal standard deviation of the critical shear stress was about 30% of the mean. Results of the shear vane test provide empirical evidence that surface strength of the bed varies horizontally. A numerical simulation of erosion with an areally heterogeneous bed reproduced erosion characteristics observed in the microcosm.

  16. Comparison of ground-water flow model particle-tracking results and isotopic data in the Mojave River ground-water basin, southern California, USA

    USGS Publications Warehouse

    Izbicki, J.A.; Stamos, C.L.; Nishikawa, T.; Martin, P.

    2004-01-01

    Flow-path and time-of-travel results for the Mojave River ground-water basin, southern California, calculated using the ground-water flow model MODFLOW and particle-tracking model MODPATH were similar to flow path and time-of-travel interpretations derived from delta-deuterium and carbon-14 data. Model and isotopic data both show short flow paths and young ground-water ages throughout the floodplain aquifer along most the Mojave River. Longer flow paths and older ground-water ages as great as 10,000 years before present were measured and simulated in the floodplain aquifer near the Mojave Valley. Model and isotopic data also show movement of water between the floodplain and regional aquifer and subsequent discharge of water from the river to dry lakes in some areas. It was not possible to simulate the isotopic composition of ground-water in the regional aquifer away from the front of the San Gabriel and San Bernardino Mountains - because recharge in these areas does not occur under the present-day climatic conditions used for calibration of the model.

  17. Diurnal variability in riverine dissolved organic matter composition determined by in situ optical measurement in the San Joaquin River (California, USA)

    USGS Publications Warehouse

    Spencer, R.G.M.; Pellerin, B.A.; Bergamaschi, B.A.; Downing, B.D.; Kraus, T.E.C.; Smart, D.R.; Dahlgren, R.A.; Hernes, P.J.

    2007-01-01

    Dissolved organic matter (DOM) concentration and composition in riverine and stream systems are known to vary with hydrological and productivity cycles over the annual and interannual time scales. Rivers are commonly perceived as homogeneous with respect to DOM concentration and composition, particularly under steady flow conditions over short time periods. However, few studies have evaluated the impact of short term variability (<1 day) on DOM dynamics. This study examined whether diurnal processes measurably altered DOM concentration and composition in the hypereutrophic San Joaquin River (California) during a relatively quiescent period. We evaluated the efficacy of using optical in situ measurements to reveal changes in DOM which may not be evident from bulk dissolved organic carbon (DOC) measurement alone. The in situ optical measurements described in this study clearly showed for the first time diurnal variations in DOM measurements, which have previously been related to both composition and concentration, even though diurnal changes were not well reflected in bulk DOC concentrations. An apparent asynchronous trend of DOM absorbance and chlorophyll-a in comparison to chromophoric dissolved organic matter (CDOM) fluorescence and spectral slope S290-350 suggests that no one specific CDOM spectrophotometric measurement explains absolutely DOM diurnal variation in this system; the measurement of multiple optical parameters is therefore recommended. The observed diurnal changes in DOM composition, measured by in situ optical instrumentation likely reflect both photochemical and biologically-mediated processes. The results of this study highlight that short-term variability in DOM composition may complicate trends for studies aiming to distinguish different DOM sources in riverine systems and emphasizes the importance of sampling specific study sites to be compared at the same time of day. The utilization of in situ optical technology allows short-term variability

  18. Using SPARROW to Model Total Nitrogen Sources, and Transport in Rivers and Streams of California and Adjacent States, U.S.A

    NASA Astrophysics Data System (ADS)

    Saleh, D.; Domagalski, J. L.

    2012-12-01

    Sources and factors affecting the transport of total nitrogen are being evaluated for a study area that covers most of California and some areas in Oregon and Nevada, by using the SPARROW model (SPAtially Referenced Regression On Watershed attributes) developed by the U.S. Geological Survey. Mass loads of total nitrogen calculated for monitoring sites at stream gauging stations are regressed against land-use factors affecting nitrogen transport, including fertilizer use, recharge, atmospheric deposition, stream characteristics, and other factors to understand how total nitrogen is transported under average conditions. SPARROW models have been used successfully in other parts of the country to understand how nutrients are transported, and how management strategies can be formulated, such as with Total Maximum Daily Load (TMDL) assessments. Fertilizer use, atmospheric deposition, and climatic data were obtained for 2002, and loads for that year were calculated for monitored streams and point sources (mostly from wastewater treatment plants). The stream loads were calculated by using the adjusted maximum likelihood estimation method (AMLE). River discharge and nitrogen concentrations were de-trended in these calculations in order eliminate the effect of temporal changes on stream load. Effluent discharge information as well as total nitrogen concentrations from point sources were obtained from USEPA databases and from facility records. The model indicates that atmospheric deposition and fertilizer use account for a large percentage of the total nitrogen load in many of the larger watersheds throughout the study area. Point sources, on the other hand, are generally localized around large cities, are considered insignificant sources, and account for a small percentage of the total nitrogen loads throughout the study area.

  19. Chemistry, mineralogy and origin of the clay-hill nitrate deposits, Amargosa River valley, Death Valley region, California, U.S.A.

    USGS Publications Warehouse

    Ericksen, G.E.; Hosterman, J.W.; St., Amand, P.

    1988-01-01

    The clay-hill nitrate deposits of the Amargosa River valley, California, are caliche-type accumulations of water-soluble saline minerals in clay-rich soils on saline lake beds of Miocene, Pliocene(?) and Pleistocene age. The soils have a maximum thickness of ??? 50 cm, and commonly consist of three layers: (1) an upper 5-10 cm of saline-free soil; (2) an underlying 15-20 cm of rubbly saline soil; and (3) a hard nitrate-rich caliche, 10-20 cm thick, at the bottom of the soil profile. The saline constituents, which make up as much as 50% of the caliche, are chiefly Cl-, NO-3, SO2-4 and Na+. In addition are minor amounts of K+, Mg2+ and Ca2+, varying, though generally minor, amounts of B2O3 and CO2-3, and trace amounts of I (probably as IO-3), NO-2, CrO2-4 and Mo (probably as MoO2-4). The water-soluble saline materials have an I/Br ratio of ??? 1, which is much higher than nearly all other saline depostis. The principal saline minerals of the caliche are halite (NaCl), nitratite (NaNO3), darapskite (Na3(SO4)(NO3)??H2O), glauberite (Na2Ca(SO4)2), gypsum (CaSO4??2H2O) and anhydrite (CaSO4). Borax (Na2B4O5(OH)4??8H2O), tincalconite (Na2B4O5(OH)4??3H2O) and trona (Na3(CO3)(HCO3)??2H2O) are abundant locally. The clay-hill nitrate deposits are analogous to the well-known Chilean nitrate deposits, and probably are of similar origin. Whereas the Chilean deposits are in permeable soils of the nearly rainless Atacama Desert, the clay-hill deposits are in relatively impervious clay-rich soils that inhibited leaching by rain water. The annual rainfall in the Death Valley region of ??? 5 cm is sufficient to leach water-soluble minerals from the more permeable soils. The clay-hill deposits contain saline materials from the lake beds beneath the nitrate deposits are well as wind-transported materials from nearby clay-hill soils, playas and salt marshes. The nitrate is probably of organic origin, consisting of atmospheric nitrogen fixed as protein by photoautotrophic blue-green algae

  20. Sediment Dynamics Affecting the Threatened Santa Ana Sucker in the Highly-modified Santa Ana River and Inset Channel, Southern California, USA

    NASA Astrophysics Data System (ADS)

    Minear, J. T.; Wright, S. A.

    2015-12-01

    In this study, we investigate the sediment dynamics of the low-flow channel of the Santa Ana River that is formed by wastewater discharges and contains some of the last remaining habitat of the Santa Ana Sucker (Catostomus santaanae). The Santa Ana River is a highly-modified river draining the San Bernardino Mountains and Inland Empire metropolitan area east of Los Angeles. Home to over 4 million people, the watershed provides habitat for the federally-threatened Santa Ana Sucker, which presently reside within the mainstem Santa Ana River in a reach supported by year-round constant discharges from water treatment plants. The nearly constant low-flow wastewater discharges and infrequent runoff events create a small, approximately 8 m wide, inset channel within the approximately 300 m wide mainstem channel that is typically dry except for large flood flows. The sediment dynamics within the inset channel are characterized by constantly evolving bed substrate and sediment transport rates, and occasional channel avulsions. The sediment dynamics have large influence on the Sucker, which rely on coarse-substrate (gravel and cobble) for their food production. In WY 2013 through the present, we investigated the sediment dynamics of the inset channel using repeat bathymetric and substrate surveys, bedload sampling, and discharge measurements. We found two distinct phases of the inset channel behavior: 1. 'Reset' flows, where sediment-laden mainstem discharges from upstream runoff events result in sand deposition in the inset channel or avulse the inset channel onto previously dry riverbed; and 2. 'Winnowing' flows, whereby the sand within the inset channel is removed by clear-water low flows from the wastewater treatment plant discharges. Thus, in contrast to many regulated rivers where high flows are required to flush fine sediments from the bed (for example, downstream from dams), in the Santa Ana River the low flows from wastewater treatment plants serve as the flushing

  1. Knemidocoptic Mange in Wild Golden Eagles, California, USA

    PubMed Central

    Stephenson, Nicole; Rogers, Krysta; Hawkins, Michelle G.; Sadar, Miranda; Guzman, David Sanchez-Migallon; Bell, Douglas A.; Smallwood, Kenneth S.; Wells, Amy; Shipman, Jessica; Foley, Janet

    2014-01-01

    During 2012–2013 in California, USA, 3 wild golden eagles were found with severe skin disease; 2 died. The cause was a rare mite, most closely related to Knemidocoptes derooi mites. Cautionary monitoring of eagle populations, habitats, and diseases is warranted. PMID:25271842

  2. Burkholderia pseudomallei Isolates in 2 Pet Iguanas, California, USA

    PubMed Central

    Zehnder, Ashley M.; Hawkins, Michelle G.; Koski, Marilyn A.; Lifland, Barry; Byrne, Barbara A.; Swanson, Alexandra A.; Rood, Michael P.; Elrod, Mindy Glass; Beesley, Cari A.; Blaney, David D.; Ventura, Jean; Hoffmaster, Alex R.; Beeler, Emily S.

    2014-01-01

    Burkholderia pseudomallei, the causative agent of melioidosis, was isolated from abscesses of 2 pet green iguanas in California, USA. The international trade in iguanas may contribute to importation of this pathogen into countries where it is not endemic and put persons exposed to these animals at risk for infection. PMID:24447394

  3. Burkholderia pseudomallei isolates in 2 pet iguanas, California, USA.

    PubMed

    Zehnder, Ashley M; Hawkins, Michelle G; Koski, Marilyn A; Lifland, Barry; Byrne, Barbara A; Swanson, Alexandra A; Rood, Michael P; Gee, Jay E; Elrod, Mindy Glass; Beesley, Cari A; Blaney, David D; Ventura, Jean; Hoffmaster, Alex R; Beeler, Emily S

    2014-02-01

    Burkholderia pseudomallei, the causative agent of melioidosis, was isolated from abscesses of 2 pet green iguanas in California, USA. The international trade in iguanas may contribute to importation of this pathogen into countries where it is not endemic and put persons exposed to these animals at risk for infection. PMID:24447394

  4. Determination of pesticides associated with suspended sediments in the San Joaquin River, California, USA, using gas chromatography-ion trap mass spectrometry

    USGS Publications Warehouse

    Bergamaschi, B.A.; Baston, D.S.; Crepeau, K.L.; Kuivila, K.M.

    1999-01-01

    An analytical method useful for the quantification of a range of pesticides and pesticide degradation products associated with suspended sediments was developed by testing a variety of extraction and cleanup schemes. The final extraction and cleanup methods chosen for use are suitable for the quantification of the listed pesticides using gas chromatography-ion trap mass spectrometry and the removal of interfering coextractable organic material found in suspended sediments. Methylene chloride extraction followed by Florisil cleanup proved most effective for separation of coextractives from the pesticide analytes. Removal of elemental sulfur was accomplished with tetrabutylammonium hydrogen sulfite. The suitability of the method for the analysis of a variety of pesticides was evaluated, and the method detection limits (MDLs) were determined (0.1-6.0 ng/g dry weight of sediment) for 21 compounds. Recovery of pesticides dried onto natural sediments averaged 63%. Analysis of duplicate San Joaquin River suspended-sediment samples demonstrated the utility of the method for environmental samples with variability between replicate analyses lower than between environmental samples. Eight of 21 pesticides measured were observed at concentrations ranging from the MDL to more than 80 ng/g dry weight of sediment and exhibited significant temporal variability. Sediment-associated pesticides, therefore, may contribute to the transport of pesticides through aquatic systems and should be studied separately from dissolved pesticides.

  5. Marine protected area networks in California, USA.

    PubMed

    Botsford, Louis W; White, J Wilson; Carr, Mark H; Caselle, Jennifer E

    2014-01-01

    California responded to concerns about overfishing in the 1990s by implementing a network of marine protected areas (MPAs) through two science-based decision-making processes. The first process focused on the Channel Islands, and the second addressed California's entire coastline, pursuant to the state's Marine Life Protection Act (MLPA). We review the interaction between science and policy in both processes, and lessons learned. For the Channel Islands, scientists controversially recommended setting aside 30-50% of coastline to protect marine ecosystems. For the MLPA, MPAs were intended to be ecologically connected in a network, so design guidelines included minimum size and maximum spacing of MPAs (based roughly on fish movement rates), an approach that also implicitly specified a minimum fraction of the coastline to be protected. As MPA science developed during the California processes, spatial population models were constructed to quantify how MPAs were affected by adult fish movement and larval dispersal, i.e., how population persistence within MPA networks depended on fishing outside the MPAs, and how fishery yields could either increase or decrease with MPA implementation, depending on fishery management. These newer quantitative methods added to, but did not supplant, the initial rule-of-thumb guidelines. In the future, similar spatial population models will allow more comprehensive evaluation of the integrated effects of MPAs and conventional fisheries management. By 2011, California had implemented 132 MPAs covering more than 15% of its coastline, and now stands on the threshold of the most challenging step in this effort: monitoring and adaptive management to ensure ecosystem sustainability. PMID:25358301

  6. Wind energy development in California, USA

    USGS Publications Warehouse

    Wilshire, H.; Prose, D.

    1987-01-01

    Windfarms have been developed rapidly in California in the last few years. The impetus has been a legislated goal to generate 10% of California's electricity by windpower by the year 2000, and generous state and federal tax incentives. Windpower is promoted as environmentally benign, which it is in traditional uses. The California program, however, is not traditional: it calls for centralized development of a magnitude sufficient to offset significant amounts of fossil fuels now used to generate electricity. Centralized windfarm development, as exemplified by the Altamont Pass, Tehachapi Mountains, and San Gorgonio Pass developments, involves major road building projects in erosion-sensitive terrain, effective closure of public lands, and other detrimental effects. A windfarm consisting of 200 turbines with 17-m rotors located in steep terrain 16 km from an existing corridor might occupy 235 ha and physically disturb 86 ha. With average annual wind speeds of 22.5 km/h, the farm would generate about 10??106 kWh/year at present levels of capacity. This annual production would offset 1% of one day's consumption of oil in California. To supply 10% of the state's electricity (at 1984 production rates) would require about 600,000 turbines of the type in common use today and would occupy more than 685,000 ha. It is likely that indirect effects would be felt in much larger areas and would include increased air and water pollution resulting from accelerated erosion, degradation of habitat of domestic and wild animals, damage to archaeological sites, and reduction of scenic quality of now-remote areas of the state. ?? 1987 Springer-Verlag New York Inc.

  7. Measurement of radon gas on major faults in California, USA

    USGS Publications Warehouse

    Zhang, W.; King, C.-Y.

    1994-01-01

    Abundant data have been gathered through measurements of radon gas emission in the soil on several major active faults, such as San Andreas and Calaveras, in California, U.S.A.. They show radon emissions and their spatial variations at the unlocked, locked, and creeping sections of faults with different tectonic movements. The characteristics of these variations and the role of fault gases in the research on earthquake prediction are discussed in this paper. ?? 1994 Acta Seismologica Sinica.

  8. Granite Exfoliation, Cosumnes River Watershed, Somerset, California

    NASA Astrophysics Data System (ADS)

    Crockett, I. Q.; Neiss-Cortez, M.

    2015-12-01

    In the Sierra Nevada foothills of California there are many exposed granite plutons within the greater Sierra Nevada batholith. As with most exposed parts of the batholith, these granite slabs exfoliate. It is important to understand exfoliation for issues of public safety as it can cause rock slides near homes, roads, and recreation areas. Through observation, measuring, and mapping we characterize exfoliation in our Cosumnes River watershed community.

  9. Flooding on California's Russian River: Role of atmospheric rivers

    USGS Publications Warehouse

    Ralph, F.M.; Neiman, P.J.; Wick, G.A.; Gutman, S.I.; Dettinger, M.D.; Cayan, D.R.; White, A.B.

    2006-01-01

    Experimental observations collected during meteorological field studies conducted by the National Oceanic and Atmospheric Administration near the Russian River of coastal northern California are combined with SSM/I satellite observations offshore to examine the role of landfalling atmospheric rivers in the creation of flooding. While recent studies have documented the characteristics and importance of narrow regions of strong meridional water vapor transport over the eastern Pacific Ocean (recently referred to as atmospheric rivers), this study describes their impact when they strike the U.S. West Coast. A detailed case study is presented, along with an assessment of all 7 floods on the Russian River since the experimental data were first available in October 1997. In all 7 floods, atmospheric river conditions were present and caused heavy rainfall through orographic precipitation. Not only do atmospheric rivers play a crucial role in the global water budget, they can also lead to heavy coastal rainfall and flooding, and thus represent a key phenomenon linkingweather and climate. Copyright 2006 by the American Geophysical Union.

  10. Microplastic contamination in the San Francisco Bay, California, USA.

    PubMed

    Sutton, Rebecca; Mason, Sherri A; Stanek, Shavonne K; Willis-Norton, Ellen; Wren, Ian F; Box, Carolynn

    2016-08-15

    Despite widespread detection of microplastic pollution in marine environments, data describing microplastic abundance in urban estuaries and microplastic discharge via treated municipal wastewater are limited. This study presents information on abundance, distribution, and composition of microplastic at nine sites in San Francisco Bay, California, USA. Also presented are characterizations of microplastic in final effluent from eight wastewater treatment plants, employing varying treatment technologies, that discharge to the Bay. With an average microplastic abundance of 700,000particles/km(2), Bay surface water appears to have higher microplastic levels than other urban waterbodies sampled in North America. Moreover, treated wastewater from facilities that discharge into the Bay contains considerable microplastic contamination. Facilities employing tertiary filtration did not show lower levels of contamination than those using secondary treatment. As textile-derived fibers were more abundant in wastewater, higher levels of fragments in surface water suggest additional pathways of microplastic pollution, such as stormwater runoff. PMID:27289280

  11. RELATIONSHIPS BETWEEN ENVIRONMENTAL VARIABLES AND BENTHIC DIATOM ASSEMBLAGES IN CALIFORNIA CENTRAL VALLEY STREAMS (USA)

    EPA Science Inventory

    Streams and rivers in the California Central Valley Ecoregion have been substantially modified by human activities. This study examines distributional patterns of benthic diatom assemblages in relation to environmental characteristics in streams and rivers of this region. Benthic...

  12. First report of the biological control agent Boreioglycaspis melaleucae (Hemiptera: Psyllidae) in California, USA.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Australian psyllid Boreioglycaspis melaleucae is a specialized herbivore of Melaleuca quinquenervia and other closely related congeners. Boreioglycaspis melaleucae was discovered in Los Angeles County (California, USA) in late 2009, feeding on ornamentally planted M. quinquenervia trees. The ps...

  13. Residential Mobility and Breast Cancer in Marin County, California, USA

    PubMed Central

    Jacquez, Geoffrey M.; Barlow, Janice; Rommel, Robert; Kaufmann, Andy; Rienti, Michael; AvRuskin, Gillian; Rasul, Jawaid

    2013-01-01

    Marin County (California, USA) has among the highest incidences of breast cancer in the U.S. A previously conducted case-control study found eight significant risk factors in participants enrolled from 1997–1999. These included being premenopausal, never using birth control pills, lower highest lifetime body mass index, having four or more mammograms from 1990–1994, beginning drinking alcohol after age 21, drinking an average two or more alcoholic drinks per day, being in the highest quartile of pack-years of cigarette smoking, and being raised in an organized religion. Previously conducted surveys provided residential histories; while Ǫ statistic accounted for participants’ residential mobility, and assessed clustering of breast cancer cases relative to controls based on the known risk factors. These identified specific cases, places, and times of excess breast cancer risk. Analysis found significant global clustering of cases localized to specific residential histories and times. Much of the observed clustering occurred among participants who immigrated to Marin County. However, persistent case-clustering of greater than fifteen years duration was also detected. Significant case-clustering among long-term residents may indicate geographically localized risk factors not accounted for in the study design, as well as uncertainty and incompleteness in the acquired addresses. Other plausible explanations include environmental risk factors and cases tending to settle in specific areas. A biologically plausible exposure or risk factor has yet to be identified. PMID:24366047

  14. Novel Picornavirus in Turkey Poults with Hepatitis, California, USA

    PubMed Central

    Honkavuori, Kirsi S.; Shivaprasad, H. L.; Street, Craig; Hirschberg, David L.; Hutchison, Stephen K.; Lipkin, W. Ian

    2011-01-01

    To identify a candidate etiologic agent for turkey viral hepatitis, we analyzed samples from diseased turkey poults from 8 commercial flocks in California, USA, that were collected during 2008–2010. High-throughput pyrosequencing of RNA from livers of poults with turkey viral hepatitis (TVH) revealed picornavirus sequences. Subsequent cloning of the ≈9-kb genome showed an organization similar to that of picornaviruses with conservation of motifs within the P1, P2, and P3 genome regions, but also unique features, including a 1.2-kb sequence of unknown function at the junction of P1 and P2 regions. Real-time PCR confirmed viral RNA in liver, bile, intestine, serum, and cloacal swab specimens from diseased poults. Analysis of liver by in situ hybridization with viral probes and immunohistochemical testing of serum demonstrated viral nucleic acid and protein in livers of diseased poults. Molecular, anatomic, and immunologic evidence suggests that TVH is caused by a novel picornavirus, tentatively named turkey hepatitis virus. PMID:21392440

  15. Residential mobility and breast cancer in Marin County, California, USA.

    PubMed

    Jacquez, Geoffrey M; Barlow, Janice; Rommel, Robert; Kaufmann, Andy; Rienti, Michael; AvRuskin, Gillian; Rasul, Jawaid

    2014-01-01

    Marin County (California, USA) has among the highest incidences of breast cancer in the U.S. A previously conducted case-control study found eight significant risk factors in participants enrolled from 1997-1999. These included being premenopausal, never using birth control pills, lower highest lifetime body mass index, having four or more mammograms from 1990-1994, beginning drinking alcohol after age 21, drinking an average two or more alcoholic drinks per day, being in the highest quartile of pack-years of cigarette smoking, and being raised in an organized religion. Previously conducted surveys provided residential histories; while statistic accounted for participants' residential mobility, and assessed clustering of breast cancer cases relative to controls based on the known risk factors. These identified specific cases, places, and times of excess breast cancer risk. Analysis found significant global clustering of cases localized to specific residential histories and times. Much of the observed clustering occurred among participants who immigrated to Marin County. However, persistent case-clustering of greater than fifteen years duration was also detected. Significant case-clustering among long-term residents may indicate geographically localized risk factors not accounted for in the study design, as well as uncertainty and incompleteness in the acquired addresses. Other plausible explanations include environmental risk factors and cases tending to settle in specific areas. A biologically plausible exposure or risk factor has yet to be identified. PMID:24366047

  16. Oklahoma City, Canadian River, OK, USA

    NASA Technical Reports Server (NTRS)

    1991-01-01

    This view of Oklahoma City, OK (35.5N, 97.5W) surrounded by the grasslands of the central plains, is detailed enough to use as a map of the major highways and throughfares within the city and surrounding area. Tinker Air Force Base and Will Rogers International Airport as well as Lakes Hefner, Stanley Draper and nearby recreation areas. The smaller community of Norman, on the banks of the Canadian River to the south, is home to the University of Oklahoma.

  17. Integrated Science Investigations of the Salton Sea, California, USA

    NASA Astrophysics Data System (ADS)

    Barnum, D.

    2006-12-01

    The Salton Sea is the latest waterbody to be formed by Colorado River floodwaters within the Salton Trough. Over the past 100 years, floodwaters have been replaced by agricultural drainage water and municipal discharges so that today, most of the water reaching the Salton Sea is agricultural drainwater flowing down the New, Alamo and Whitewater Rivers. An evaporation of about 6 feet per year and inputs of more than 4 million tons of salt per year have increased salinity of the waters of the Salton Sea. The current salinity level of approximately 46 parts per thousand is about 25% more saline than ocean water. Diverting water from the Imperial Valley agricultural lands to urban Southern California, and anticipated loss of inflows from Mexico and increasing water conservation activities will result in less water flowing into the Salton Sea. A Restoration Program is being conducted to evaluate the effects of diminished inflows on the Salton Sea Ecosystem and recommend alternatives to avoid or minimize those effects. The Salton Sea has become increasingly important as habitat for migratory birds because of wetland losses. California has lost approximately 91% of interior wetland acreage from pre-settlement until the mid-1980's. The Salton Sea provides critical habitat linking distant wetlands of Pacific and Central Flyways to wintering habitats in Mexico and Central and South America. More than 400 species of birds have been observed in the Salton Sea Ecosystem. Large percentages of the populations for several bird species such as the endangered Yuma Clapper Rail, the Eared Grebe, Snowy Plover and American White Pelican utilize the Salton Sea. Approximately 20 species of conservation concern utilize the Salton Sea ecosystem. Fish-eating birds such as Great Blue Herons, California Brown Pelicans, Double-crested Cormorants and several species of egrets are highly dependent upon the fishery of the Salton Sea. The Salton Sea fishery is now primarily comprised of tilapia

  18. Multimedia screening of contaminants of emerging concern (CECS) in coastal urban watersheds in southern California (USA).

    PubMed

    Maruya, Keith A; Dodder, Nathan G; Sengupta, Ashmita; Smith, Deborah J; Lyons, J Michael; Heil, Ann T; Drewes, Jörg E

    2016-08-01

    To examine the occurrence and fate of contaminants of emerging concern (CECs) and inform future monitoring of CECs in coastal urban waterways, water, sediment, and fish tissue samples were collected and analyzed for a broad suite of pharmaceuticals and personal care products (PPCPs), commercial and/or household chemicals, current use pesticides, and hormones in an effluent-dominated river and multiple embayments in southern California (USA). In the Santa Clara River, which receives treated wastewater from several facilities, aqueous phase CECs were detectable at stations nearest discharges from municipal wastewater treatment plants but were attenuated downstream. Sucralose and the chlorinated phosphate flame retardants tris(1-chloro-2-propyl) phosphate (TCPP), tris(1,3-dichloro-2-propyl) phosphate (TDCPP), and tris(2-chloroethyl) phosphate (TCEP) were most abundant in water, with maximum concentrations of 35 μg/L, 3.3 μg/L, 1.4 μg/L, and 0.81 μg/L, respectively. Triclocarban, an antimicrobial agent in use for decades, was more prevalent in water than triclosan or nonylphenol. Maximum concentrations of bifenthrin, permethrin, polybrominated diphenyl ethers (PBDEs), and degradates of fipronil exceeded CEC-specific monitoring trigger levels recently established for freshwater and estuarine sediments by factors of 10 to 1000, respectively. Maximum fish tissue concentrations of PBDEs varied widely (370 ng/g and 7.0 ng/g for the Santa Clara River and coastal embayments, respectively), with most species exhibiting concentrations at the lower end of this range. These results suggest that continued monitoring of pyrethroids, PBDEs, and degradates of fipronil in sediment is warranted in these systems. In contrast, aqueous pharmaceutical concentrations in the Santa Clara River were not close to exceeding current monitoring trigger levels, suggesting a lower priority for targeted monitoring in this medium. Environ Toxicol Chem 2016;35:1986-1994. © 2016 SETAC

  19. Pyrethroid and organophosphate pesticide-associated toxicity in two coastal watersheds (California, USA).

    PubMed

    Phillips, Bryn M; Anderson, Brian S; Hunt, John W; Siegler, Katie; Voorhees, Jennifer P; Tjeerdema, Ron S; McNeill, Katie

    2012-07-01

    Portions of the Santa Maria River and Oso Flaco Creek watersheds in central California, USA, are listed as impaired under section 303(d) of the Clean Water Act and require development of total maximum daily load (TMDL) allocations. These listings are for general pesticide contamination, but are largely based on historic monitoring of sediment and fish tissue samples that showed contamination by organochlorine pesticides. Recent studies have shown that toxicity in these watersheds is caused by organophosphate pesticides (water and sediment) and pyrethroid pesticides (sediment). The present study was designed to provide information on the temporal and spatial variability of toxicity associated with these pesticides to better inform the TMDL process. Ten stations were sampled in four study areas, one with urban influences, and the remaining in agriculture production areas. Water toxicity was assessed with the water flea Ceriodaphnia dubia, and sediment toxicity was assessed with the amphipod Hyalella azteca. Stations in the lower Santa Maria River had the highest incidence of toxicity, followed by stations influenced by urban inputs. Toxicity identification evaluations and chemical analysis demonstrated that the majority of the observed water toxicity was attributed to organophosphate pesticides, particularly chlorpyrifos, and that sediment toxicity was caused by mixtures of pyrethroid pesticides. The results demonstrate that both agriculture and urban land uses are contributing toxic concentrations of these pesticides to adjacent watersheds, and regional water quality regulators are now using this information to develop management objectives. PMID:22549911

  20. Seasonal Streamflow Reconstructions of the Choctawhatchee River (AL-USA)

    NASA Astrophysics Data System (ADS)

    Tootle, G. A.; Therrell, M.; Moat, T.; Meko, M.

    2015-12-01

    Tree ring samples were collected from Bald Cypress (Taxodium distichum) species in watersheds adjacent to the Choctawhatchee River (Alabama and Florida - USA). These samples were collected to update an existing tree ring proxy that was developed in the late 1980's and early 1990's (Stahle and Cleaveland, 1992, IGBP PAGES/World Data Center for Paleoclimatology Data Contribution # FL001, Choctawhatchee River. NOAA/NCDC Paleoclimatology Program, Boulder, Colorado, USA). The motivation for updating the tree ring proxy was to determine if recent droughts identified in historic unimpaired Choctawhatchee River streamflow records were reflected in Bald Cypress tree ring growth. Historic streamflow from 1934 to 2013 was obtained for the USGS station at Newton, Alabama and one, five and ten-year droughts were identified and ranked. Many of the most severe droughts were identified in recent (~2000 to present) records (see Figure). Combining the new tree ring proxy with other regional proxies, seasonal streamflow was reconstructed for the Choctawhatchee River Newton, Alabama gage. The reconstructed streamflow allows water managers and planners to observe past wet and dry periods that may exceed magnitude, duration and/or severity of wet and dry periods in observed records.

  1. Reclaiming agricultural drainage water with nanofiltration membranes: Imperial Valley, California, USA

    USGS Publications Warehouse

    Kharaka, Y.K.; Schroeder, R.A.; Setmire, J.G.

    2003-01-01

    We conducted pilot-scale field experiments using nanofiltration membranes to lower the salinity and remove Se, As and other toxic contaminants from saline agricultural wastewater in the Imperial Valley, California, USA. Farmlands in the desert climate (rainfall - 7.4 cm/a) of Imperial Valley cover -200,000 ha that are irrigated with water (-1.7 km3 annually) imported from the Colorado River. The salinity (-850 mg/L) and concentration of Se (-2.5 ??g/L) in the Colorado River water are high and evapotranpiration further concentrates salts in irrigation drainage water, reaching salinities of 3,000-15,000 mg/L TDS and a median Se value of -30 ??g/L. Experiments were conducted with two commercially available nanofiltration membranes, using drainage water of varying composition, and with or without the addition of organic precipitation inhibitors. Results show that these membranes selectively remove more than 95% of Se, SO4, Mo, U and DOC, and -30% of As from this wastewater. Low percentages of Cl, NO3 and HCO3, with enough cations to maintain electrical neutrality also were removed. The product water treated by these membranes comprised more than 90% of the wastewater tested. Results indicate that the treated product water from the Alamo River likely will have less than 0.2 ??g/L Se, salinity of 300-500 mg/L TDS and other chemical concentrations that meet the water quality criteria for irrigation and potable use. Because acceptability is a major issue for providing treated wastewater to urban centers, it may be prudent to use the reclaimed water for irrigation and creation of lower salinity wetlands near the Salton Sea; an equivalent volume of Colorado River water can then be diverted for the use of increasing populations of San Diego and other urban centers in southern California. Nanofiltration membranes yield greater reclaimed-water output and require lower pressure and less pretreatment, and therefore are generally more cost effective than traditional reverse

  2. Petrogenesis of serpentinites from the Franciscan Complex, western California, USA

    NASA Astrophysics Data System (ADS)

    Barnes, Jaime D.; Eldam, Rania; Lee, Cin-Ty A.; Errico, Jessica C.; Loewy, Staci; Cisneros, Miguel

    2013-09-01

    Serpentinites from the Franciscan Complex of California, USA, were analyzed for their bulk major and trace element compositions, relict mineral (spinel and pyroxene) compositions, and stable isotope (O, H, Cl) compositions with the goal of determining protolith origin and subsequent serpentinizing fluid sources in order to decipher the tectonic setting of serpentinization. We focused on serpentinite bodies found in the Franciscan Complex (west of Cuesta Ridge; south of San Francisco; Tiburon Peninsula; Healdsburg) (n = 12). Three samples from Cuesta Ridge (part of the Coast Range ophiolite) were also analyzed for comparison. Serpentinites from Cuesta Ridge have flat to U-shaped chondrite-normalized REE patterns and spinels with Cr# values > 0.60 implying a supra-subduction zone origin. In contrast, Franciscan serpentinites west of Cuesta Ridge and Tiburon Peninsula have positive-sloped REE patterns. This depletion in LREE is typical of abyssal peridotites. Most relict spinels have low Cr# values (< 0.3) and relict clinopyroxenes from Tiburon Peninsula have high HREE concentrations, also supporting an abyssal origin. Franciscan serpentinite samples from south of San Francisco and near Healdsburg have U-shaped REE patterns and spinel compositions that lie within the forearc peridotite field with some overlap into the abyssal field and are of more ambiguous origin. All samples are high in fluid-mobile elements with remarkable positive Ce and Y anomalies. We speculate that these anomalies may be due to involvement of highly oxidizing fluids resulting in the preferential scavenging of Ce and Y by ferromanganese oxyhydroxides during serpentinization. All samples (except those south of San Francisco) have δ18O values of + 5.4 to + 7.9‰, typical values for oceanic serpentinites formed via low-T seawater hydration on the seafloor. δD values of all samples are extremely low (- 107 to - 90‰), likely the result of post-serpentinization, post-emplacement interaction with

  3. BALD ROCK AND MIDDLE FORK FEATHER RIVER ROADLESS AREAS, CALIFORNIA.

    USGS Publications Warehouse

    Sorensen, Martin L.; Buehler, Alan R.

    1984-01-01

    The results of a mineral-resource assessment of the Bald Rock and Middle Fork Feather River Roadless Areas in California indicate several areas within the Middle Fork Feather River Roadless Area that have probable mineral-resource potential. A probable potential for placer gold exists at various localities, both in areas covered by Tertiary volcanic rocks and in small streams that drain into the Middle Fork of the Feather River. A probable potential for small deposits of chromite exists in tracts underlain by ultramafic rocks in the Melones fault zone. A probable potential for lead-silver deposits is recognized at the east end of the Middle Fork Feather River Roadless Area.

  4. Atmospheric modeling of the July 1991 metam sodium spill into California`s Upper Sacramento River

    SciTech Connect

    Baskett, R.L.; Nasstrom, J.S.; Watkins, J.J. Jr.; Ellis, J.S.; Sullivan, T.J.

    1992-03-05

    The California Office of Emergency Services asked the Department of Energy`s Atmosphere Release Advisory Capability (ARAC) at the Lawrence Livermore National Laboratory to determine the maximum credible air concentrations from a spill of metam sodium into California`s Upper Sacramento River. About 19,000 gallons of metam sodium herbicide were spilled into the river approximately 3 miles north of Dunsmuir, California, due to a tank-car derailment on the night of July 14, 1991. The herbicide moved in the river toward the northernmost finger of California`s largest reservoir, Lake Shasta, 45 miles to the south. As it flowed down the deep canyon, the water-soluble metam sodium decomposed into hydrogen sulfide and methylamine gases. Residents along the river were advised to evacuate the area, and a 50-mile stretch of Interstate 5 was temporarily closed. Response officials were also concerned that sunlight would readily evaporate the enlarged slick once it arrived into the still water of Lake Shasta on July 16. On July 15, ARAC used its three-dimensional emergency response modeling system to determine the highest instantaneous and 8-hour average air concentrations of toxic gas by- products over upper Lake Shasta. A quick response was possible using on-line topographic and geographic data bases in combination with forecasted southwestern surface winds. The worst-case calculation showed that the gases would be well below any health hazard.

  5. Dispersal of river sediment in the Southern California Bight

    USGS Publications Warehouse

    Warrick, J.A.; Farnsworth, K.L.

    2009-01-01

    The rivers of Southern California deliver episodic pulses of water, sediment, nutrients, and pollutants to the region's coastal waters. Although river-sediment dispersal is observed in positively buoyant (hypopycnal) turbid plumes extending tens of kilometers from river mouths, very little of the river sediment is found in these plumes. Rather, river sediment settles quickly from hypopycnal plumes to the seabed, where transport is controlled by bottom-boundary layer processes, presumably including fluid-mud (hyperpycnal) gravity currents. Here we investigate the geographical patterns of river-sediment dispersal processes by examining suspended-sediment concentrations and loads and the continental shelf morphology offshore river mouths. Throughout Southern California, river sediment is discharged at concentrations adequately high to induce enhanced sediment settling, including negative buoyancy. The rivers draining the Western Transverse Range produce suspended-sediment concentrations that are orders of magnitude greater than those in the urbanized region and Peninsular Range to the south, largely due to differences in sediment yield. The majority of sediment discharge from the Santa Clara River and Calleguas Creek occurs above the theoretical negative buoyancy concentration (>40 g/l). These rivers also produce event sediment loading as great as the Eel River, where fluid-mud gravity currents are observed. The continental shelf of Southern California has variable morphology, which influences the ability to transport via gravity currents. Over half of the rivers examined are adjacent to shelf slopes greater than 0.01, which are adequately steep to sustain auto-suspending gravity currents across the shelf, and have little (<10 m) Holocene sediment accumulation. Shelf settings of the Ventura, Santa Clara, and Tijuana Rivers are very broad and low sloped (less than 0.004), which suggests that fluid-mud gravity currents could transport across these shelves, albeit slowly

  6. Laboratory Testing for Middle East Respiratory Syndrome Coronavirus, California, USA, 2013–2014

    PubMed Central

    Shahkarami, Mahtab; Yen, Cynthia; Glaser, Carol; Xia, Dongxiang; Watt, James

    2015-01-01

    Since Middle East respiratory syndrome coronavirus (MERS-CoV) first emerged, the California Department of Public Health has coordinated efforts to identify possible cases in travelers to California, USA, from affected areas. During 2013–2014, the department investigated 54 travelers for MERS-CoV; none tested positive, but 32 (62%) of 52 travelers with suspected MERS-CoV had other respiratory viruses. PMID:26291839

  7. Geochemical characteristics of Heavy metals of river sediment from the main rivers at Texas, USA.

    NASA Astrophysics Data System (ADS)

    Matsumoto, I.; Hoffman, D.; MacAlister, J.; Ishiga, H.

    2008-12-01

    Trinity River is one of the biggest rivers which flows through Dallas and Fort Worth two big cities of USA and are highly populated. Trinity river drains into the Gulf of Mexico. Sediment samples collected from various points along the upper and lower streams were subjected to content analysis and elution analysis (using liquate (flow) out test) on the heavy metals like Cd, CN, Pb, Cr, As, Hg, Ni, Zn and Cu from the river sediment for the purpose of environment assessment. A total of 22 sample points were identified from upper stream to lower stream and samples were collected such that almost the whole stream length of Trinity River is covered. Results show that heavy metal content through out the river stream is below the recommended limits posing no immediate environmental threat. However, the experimental results show clear impact of human population in bigger cities on heavy metal concentrations in the river sediments as compared to smaller cities with low human population. It could be seen from the analysis that all the heavy metals show relatively high content and high elution value in Dallas and Fort Worth. As we move away from the big cities, the value of content and elution of sediment decreased by natural dilution effect by the river. And we also present the data of the Colorado and San Antonio rivers.

  8. Measured river leakages using conventional streamflow techniques: The case of Souhegan River, New Hampshire, USA

    USGS Publications Warehouse

    Harte, P.T.; Kiah, R.G.

    2009-01-01

    Multiple streamflow measurements were made at coupled discharge measurement stations to quantify rates of aquifer recharge and discharge on two reaches of the Souhegan River, New Hampshire, USA, flowing within a glacial-drift river-valley aquifer. The reaches included a predominantly losing (aquifer recharge) reach and a variable (aquifer recharge and discharge) reach located downstream of the former reach. River leakage, the differential between coupled upstream and downstream streamflow measurements along a reach, varied by almost 30 cubic feet per second (ft3/s) (0.85 m3/s) along the two reaches. The upper reach averaged 3.94 ft3/s (0.11 m3/s) loss whereas the lower reach averaged 4.85 ft3/s (0.14 m3/s) gain. At the upper reach, 13 losses were measured out of 19 coupled measurements. At the lower reach, ten out of 13 coupled measurements indicated gains in flow and suggest that this reach is primarily a gaining river reach. An important factor in river leakage appears to be antecedent trends in river stage. At the upper reach, gains were measured only during periods of declining river stage. Conversely, at the lower reach, streamflow loss was measured primarily during periods of rising river stage. Although some tendencies exist, several factors complicate the analysis of river leakage, most notably the inaccuracies in computed stream discharge. ?? Springer-Verlag 2008.

  9. Measured river leakages using conventional streamflow techniques: the case of Souhegan River, New Hampshire, USA

    NASA Astrophysics Data System (ADS)

    Harte, Philip T.; Kiah, Richard G.

    2009-03-01

    Multiple streamflow measurements were made at coupled discharge measurement stations to quantify rates of aquifer recharge and discharge on two reaches of the Souhegan River, New Hampshire, USA, flowing within a glacial-drift river-valley aquifer. The reaches included a predominantly losing (aquifer recharge) reach and a variable (aquifer recharge and discharge) reach located downstream of the former reach. River leakage, the differential between coupled upstream and downstream streamflow measurements along a reach, varied by almost 30 cubic feet per second (ft3/s) (0.85 m3/s) along the two reaches. The upper reach averaged 3.94 ft3/s (0.11 m3/s) loss whereas the lower reach averaged 4.85 ft3/s (0.14 m3/s) gain. At the upper reach, 13 losses were measured out of 19 coupled measurements. At the lower reach, ten out of 13 coupled measurements indicated gains in flow and suggest that this reach is primarily a gaining river reach. An important factor in river leakage appears to be antecedent trends in river stage. At the upper reach, gains were measured only during periods of declining river stage. Conversely, at the lower reach, streamflow loss was measured primarily during periods of rising river stage. Although some tendencies exist, several factors complicate the analysis of river leakage, most notably the inaccuracies in computed stream discharge.

  10. DETECTING FOREST STRESS AND DECLINE IN RESPONSE TO INCREASING RIVER FLOW IN SOUTHWEST FLORIDA, USA

    EPA Science Inventory

    Forest stress and decline resulting from increased river flows were investigated in Myakka River State Park (MRSP), Florida, USA. Since 1977, land-use changes around the upper Myakka River watershed have resulted in significant increases in water entering the river, which have...

  11. Public Health Response to Aedes aegypti and Ae. albopictus Mosquitoes Invading California, USA

    PubMed Central

    Kramer, Vicki; Yoshimizu, Melissa Hardstone; Metzger, Marco; Hu, Renjie; Padgett, Kerry; Vugia, Duc J.

    2015-01-01

    Aedes aegypti and Ae. albopictus mosquitoes, primary vectors of dengue and chikungunya viruses, were recently detected in California, USA. The threat of potential local transmission of these viruses increases as more infected travelers arrive from affected areas. Public health response has included enhanced human and mosquito surveillance, education, and intensive mosquito control. PMID:26401891

  12. A draft genome sequence of “Candidatus Liberibacter asiaticus” from California, USA

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The draft genome sequence of “Candidatus Liberibacter asiaticus” strain HHCA, collected from a lemon tree in California, USA, is reported. The HHCA strain has a genome size of 1,118,244 bp, with G+C content of 36.6%. The HHCA genome encodes 1,191 predicted open reading frames and 51 RNA genes....

  13. Emissions calculated from particulate matter and gaseous ammonia measurements from a commercial dairy in California, USA

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Emission rates and factors for particulate matter (PM) and gaseous ammonia (NH3) were estimated from measurements taken at a dairy in California, USA in June 2008. Concentration measurements were made using both point and remote sensors. Filter-based PM samplers and OPCs characterized aerodynamic an...

  14. Transformation Of Arsenic In Agricultural Drainage Water Disposed Into An Evaporation Basin In California, USA.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Evaporation basins have been widely used for the disposal of agricultural drainage in areas requiring subsurface drainage in the San Joaquin Valley of California, a high agricultural production area in USA. The irrigation drainage water contains elevated concentrations of trace elements, including S...

  15. Habitat Effects on Population Density and Movement of Insect Vectors of Xylella fastidiosa in California, USA

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Xylella fastidiosa is a xylem-limited bacterium that causes disease in grapevines, almonds, citrus, pear, alfalfa, and many other economically important plants. In California, USA, the bacteria are transmitted by several species of leafhoppers including the cicadellids Draeculacephala minerva Ball a...

  16. Description of the larvae of Nothotrichia shasta Harris and Armitage (Trichoptera: Hydroptilidae) from California, USA

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Nothotrichia Flint is a small genus of infrequently collected microcaddisflies that are amphitropical in distribution. Previously only known from adult specimens, the first description and illustration of larvae in the genus, N. shasta from California, USA is presented. We provide characters to sepa...

  17. Pyrethroid insecticide concentrations and toxicity in streambed sediments and loads in surface waters of the San Joaquin Valley, California, USA

    USGS Publications Warehouse

    Domagalski, J.L.; Weston, D.P.; Zhang, M.; Hladik, M.

    2010-01-01

    Pyrethroid insecticide use in California, USA, is growing, and there is a need to understand the fate of these compounds in the environment. Concentrations and toxicity were assessed in streambed sediment of the San Joaquin Valley of California, one of the most productive agricultural regions of the United States. Concentrations were also measured in the suspended sediment associated with irrigation or storm-water runoff, and mass loads during storms were calculated. Western valley streambed sediments were frequently toxic to the amphipod, Hyalella azteca, with most of the toxicity attributable to bifenthrin and cyhalothrin. Up to 100% mortality was observed in some locations with concentrations of some pyrethroids up to 20 ng/g. The western San Joaquin Valley streams are mostly small watersheds with clay soils, and sediment-laden irrigation runoff transports pyrethroid insecticides throughout the growing season. In contrast, eastern tributaries and the San Joaquin River had low bed sediment concentrations (<1 ng/g) and little or no toxicity because of the preponderance of sandy soils and sediments. Bifenthrin, cyhalothrin, and permethrin were the most frequently detected pyrethroids in irrigation and storm water runoff. Esfenvalerate, fenpropathrin, and resmethrin were also detected. All sampled streams contributed to the insecticide load of the San Joaquin River during storms, but some compounds detected in the smaller creeks were not detected in the San Joaquin River. The two smallest streams, Ingram and Hospital Creeks, which had high sediment toxicity during the irrigation season, accounted for less than 5% of the total discharge of the San Joaquin River during storm conditions, and as a result their contribution to the pyrethroid mass load of the larger river was minimal. ?? 2010 SETAC.

  18. Speciation and behavior of arsenic in evaporation basins, California, USA

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Disposal of saline subsurface drainage waters from croplands into evaporation basins (or ponds) in the San Joaquin Valley of California causes excessive accumulation of salts and elevated concentrations of arsenic (As), a potentially high risk element with little information about its fate, in the a...

  19. Waterbird Susceptibility to Avian Cholera at Hayward Marsh, California, USA.

    PubMed

    Wray, Amy K; Bell, Douglas A; Dramer, Peter; Taylor, Mark

    2016-07-01

    We characterized past avian cholera outbreaks in waterbirds at Hayward Marsh, California, US. In 2013, we surveyed populations and determined the presence of disease using several diagnostic methods, including behavioral and physical observations, field necropsy, and bacterial culture. We compiled this information with data from previous outbreaks from 1990-2012 to compare waterbird abundance to various measures of mortality, including percentage of mortality and percentage of difference between abundance and mortality by species. We suggest that Ruddy Duck ( Oxyura jamaicensis ) have consistently suffered greater mortality from this disease than have other species at this site. PMID:27258407

  20. Range and Frequency of Africanized Honey Bees in California (USA)

    PubMed Central

    Kono, Yoshiaki; Kohn, Joshua R.

    2015-01-01

    Africanized honey bees entered California in 1994 but few accounts of their northward expansion or their frequency relative to European honey bees have been published. We used mitochondrial markers and morphometric analyses to determine the prevalence of Africanized honeybees in San Diego County and their current northward progress in California west of the Sierra Nevada crest. The northernmost African mitotypes detected were approximately 40 km south of Sacramento in California’s central valley. In San Diego County, 65% of foraging honey bee workers carry African mitochondria and the estimated percentage of Africanized workers using morphological measurements is similar (61%). There was no correlation between mitotype and morphology in San Diego County suggesting Africanized bees result from bidirectional hybridization. Seventy percent of feral hives, but only 13% of managed hives, sampled in San Diego County carried the African mitotype indicating that a large fraction of foraging workers in both urban and rural San Diego County are feral. We also found a single nucleotide polymorphism at the DNA barcode locus COI that distinguishes European and African mitotypes. The utility of this marker was confirmed using 401 georeferenced honey bee sequences from the worldwide Barcode of Life Database. Future censuses can determine whether the current range of the Africanized form is stable, patterns of introgression at nuclear loci, and the environmental factors that may limit the northern range of the Africanized honey bee. PMID:26361047

  1. NORTH FORK OF THE AMERICAN RIVER WILDERNESS STUDY AREA, CALIFORNIA.

    USGS Publications Warehouse

    Harwood, David S.; Federspiel, Francis E.

    1984-01-01

    Mineral-resource surveys of the North Fork of the American River Wilderness study area, California have identified a zone of substantiated resource potential for gold and silver. Zones of probable gold and silver potential occur in the eastern part of the area between the Wubbena and La Trinidad mines and locally around the Marrs mine. A zone with probable chromium potential occurs in the serpentinite belt along the western border of the area. No energy resources were identified in this study.

  2. Linking hyporheic flow and nitrogen cycling near the Willamette River - A large river in Oregon, USA

    USGS Publications Warehouse

    Hinkle, S.R.; Duff, J.H.; Triska, F.J.; Laenen, A.; Gates, E.B.; Bencala, K.E.; Wentz, D.A.; Silva, S.R.

    2001-01-01

    Several approaches were used to characterize ground water/surface water interactions near the Willamette River - A large (ninth order) river in Oregon, USA. A series of potentiometric surface maps demonstrated the presence of highly dynamic hydraulic gradients between rivers and the adjacent aquifer. Hyporheic zone gradients extended on the order of hundreds of meters. River gains and losses at the river stretch scale (tens of kilometers) were consistent with fluxes implied by the potentiometric surface maps, and apparently reflect regional ground water/surface water interactions. Gains and losses of up to 5-10% of streamflow were observed at this scale. On the river reach scale (1-2 km), gains and losses on the order of 5% of streamflow were interpreted as representing primarily local hyporheic exchange. Isotopic and chemical data collected from shallow hyporheic zone wells demonstrated interaction between regional ground water and river water. The origin of sampled hyporheic zone water ranged from a mixture dominated by regional ground water to water containing 100% river water. The common assumption that ground and river water mix primarily in the river channel is not applicable in this system. Isotopic and chemical data also indicated that significant (nearly complete) vegetative nitrate uptake and/or nitrate reduction occurred in water from 4 of 12 hyporheic zone sites. In these cases, it was primarily nitrate transported to the hyporheic zone in regional ground water that was removed from solution. Isotopes of water and nitrate indicated that hyporheic zone water sampled at two sites was composed of water originating as river water and demonstrated that significant vegetative nitrate uptake and nitrate reduction occurred along these hyporheic zone flowpaths. Thus, the hyporheic zone may, in some instances, serve to remove nitrate from river water. Additional investigations with chemical tools and microbial enzyme assays were conducted at one hyporheic site. A

  3. Temporal and Spatial Variation of Atmospherically Deposited Organic Contaminants at High Elevation in Yosemite National Park, California, USA

    EPA Science Inventory

    Atmospherically deposited organic contaminants in the Sierra Nevada mountains of California, USA, have exceeded some thresholds of concern, but the spatial and temporal distributions of contaminants in the mountains are not well known. The present study evaluated (1) whether the...

  4. Bouse Formation in the Bristol basin near Amboy, California, USA

    USGS Publications Warehouse

    Miller, David M.; Reynolds, Robert E.; Bright, Jordan E.; Starratt, Scott W.

    2014-01-01

    Limestone beds underlain and overlain by alluvial fan conglomerate near Amboy, California, are very similar in many respects to parts of the Bouse Formation, suggesting that an arm of the Pliocene Bouse water body extended across a wide part of the southern Mojave Desert. The deposits are north of the town of Amboy at and below an elevation of 290 m, along the northern piedmont of the Bristol “dry” Lake basin. The Amboy outcrops contain the Lawlor Tuff (4.83 Ma), which is also found in an outcrop of the Bouse Formation in the Blythe basin near Buzzards Peak in the Chocolate Mountains, 180 km southeast of Amboy. Bouse exposures near Amboy are ∼3.4 m thick, white, distinctly bedded, with limestone and calcareous sandstone as well as stromatolite mounds; we interpret these as nearshore deposits. The Bouse at Amboy contains ostracodes, diatoms, and mollusks that indicate saline lake or estuarine environments with an admixture of fresh-water forms. Along with wading bird tracks and a spine from a marine fish, these fossils suggest that the deposits formed in saline waters near a fresh-water source such as a perennial stream. Beds of the outcrop dip southward and are 113 m above the surface of Bristol Playa, where similar age sediments are buried 270+ m deep, indicating significant faulting and vertical tectonics in this part of the Eastern California Shear Zone during the past 5 m.y. Confirmation of the Bouse Formation at Amboy strengthens previous assignments to the Bouse Formation for mudstones in driller logs at Danby “dry” Lake, California, and suggests that areally extensive arms of the Bouse water body were west of the Blythe basin. The Bristol basin arm of the lower Bouse basin probably was restricted from the main water body by narrow passages, but Bouse sediment there is similar to that in the Blythe basin, suggesting generally similar water chemistry and environmental conditions. Examining the degree to which Bouse deposits in the western arms

  5. River plume patterns and dynamics within the Southern California Bight

    NASA Astrophysics Data System (ADS)

    Warrick, J. A.; DiGiacomo, P. M.; Weisberg, S. B.; Nezlin, N. P.; Mengel, M.; Jones, B. H.; Ohlmann, J. C.; Washburn, L.; Terrill, E. J.; Farnsworth, K. L.

    2007-11-01

    Stormwater river plumes are important vectors of marine contaminants and pathogens in the Southern California Bight. Here we report the results of a multi-institution investigation of the river plumes across eight major river systems of southern California. We use in situ water samples from multi-day cruises in combination with MODIS satellite remote sensing, buoy meteorological observations, drifters, and HF radar current measurements to evaluate the dispersal patterns and dynamics of the freshwater plumes. River discharge was exceptionally episodic, and the majority of storm discharge occurred in a few hours. The combined plume observing techniques revealed that plumes commonly detach from the coast and turn to the left, which is the opposite direction of Coriolis influence. Although initial offshore velocity of the buoyant plumes was ˜50 cm/s and was influenced by river discharge inertia (i.e., the direct momentum of the river flux) and buoyancy, subsequent advection of the plumes was largely observed in an alongshore direction and dominated by local winds. Due to the multiple day upwelling wind conditions that commonly follow discharge events, plumes were observed to flow from their respective river mouths to down-coast waters at rates of 20-40 km/d. Lastly, we note that suspended-sediment concentration and beam-attenuation were poorly correlated with plume salinity across and within the sampled plumes (mean r2=0.12 and 0.25, respectively), while colored dissolved organic matter (CDOM) fluorescence was well correlated (mean r2=0.56), suggesting that CDOM may serve as a good tracer of the discharged freshwater in subsequent remote sensing and monitoring efforts of plumes.

  6. Status and habitat use of the California black rail in the Southwestern USA

    USGS Publications Warehouse

    Conway, C.J.; Sulzman, C.

    2007-01-01

    California black rails (Laterallus jamaicensis coturniculus) occur in two disjunct regions: the southwestern USA (western Arizona and southern California) and northern California (Sacramento Valley and the San Francisco Bay area). We examined current status of black rails in the southwestern USA by repeating survey efforts first conducted in 1973-1974 and again in 1989, and also examined wetland plant species associated with black rail distribution and abundance. We detected 136 black rails in Arizona and southern California. Black rail numbers detected during past survey efforts were much higher than the numbers detected during our more intensive survey effort, and hence, populations have obviously declined. Plants that were more common at points with black rails included common threesquare (Schoenoplectus pungens), arrowweed (Pluchea sericea), Fremont cottonwood (Populus fremontii), seepwillow (Baccharis salicifolia), and mixed shrubs, with common threesquare showing the strongest association with black rail presence. Plant species and non-vegetative communities that were less common at points with black rails included California bulrush (Schoenoplectus californicus), southern cattail (Typha domingensis), upland vegetation, and open water. Black rails were often present at sites that had some saltcedar (Tamarix ramosissima), but were rarely detected in areas dominated by saltcedar. We recommend that a standardized black rail survey effort be repeated annually to obtain estimates of black rail population trends. Management of existing emergent marshes with black rails is needed to maintain stands of common threesquare in early successional stages. Moreover, wetland restoration efforts that produce diverse wetland vegetation including common threesquare should be implemented to ensure that black rail populations persist in the southwestern USA. ?? 2007, The Society of Wetland Scientists.

  7. Spatial Distribution of Lead in Sacramento, California, USA

    PubMed Central

    Solt, Michael J.; Deocampo, Daniel M.; Norris, Michelle

    2015-01-01

    Chronic exposure to lead remains a health concern in many urban areas; Sacramento, California is one example, with state surveillance data showing nearly 3% of screened children reported with blood lead levels over 4.5 μg/dL in 2009. To investigate the environmental exposure, 91 soil samples were collected and analyzed by ICP-AES and ICP-MS for 14 elements. An additional 28 samples were collected from areas of focus and analyzed by hand-held X-ray fluorescence spectrometry for Pb and Zn. Analysis of the metals data revealed non-normal distributions and positive skewness, consistent with anthropogenic input. In addition, high correlation coefficients (≥0.75) of metal concentrations in Cd-Pb, Cd-Zn, Pb-Zn, and Sb-Sn pairs suggest similarities in the input mechanisms. Semivariograms generated from Pb and associated metals reveal these metals to exhibit spatial correlation. A prediction map of lead concentrations in soil was generated by ordinary kriging, showing elevated concentrations in soil located in the central, older area of Sacramento where historic traffic density and industrial activity have been historically concentrated. XRF analysis of Pb and Zn from additional samples verifies elevated concentrations in the central areas of Sacramento as predicted. PMID:25789455

  8. Modeling potential tsunami river surge in Redwood Creek, California

    NASA Astrophysics Data System (ADS)

    Courtney, J. E.; Admire, A. R.; Nicolini, T.; Dengler, L. A.

    2013-12-01

    Significant destruction can be caused by tsunami penetration in estuaries and up river channels. In the 1964 tsunami on the west coast of North America, much of the resulting damage was caused by tsunami river bores penetrating miles inland. A HEC-RAS model is used in this study to look at the likely extent of inundation from both distant and near-field tsunamis in Redwood Creek on the north coast of California. The Redwood Creek drainage basin has been analyzed extensively for riverine flooding, levee stability and sediment transport. The unsteady flow model in HEC-RAS uses an implicit finite difference scheme to approximate solutions to the continuity and momentum equations. Two different scenarios are evaluated in this analysis: 1. tsunami propagation up a dry river channel; 2. tsunami propagation up a partially full river channel. Scenario 1 provides the baseline for propagation behavior without river flow influence. Scenario 2 uses the HEC-RAS model to determine steady state conditions in the channel for different flow rates to establish initial boundary conditions. The tsunami magnitude and flow conditions are altered to determine the effect on tsunami surge propagation. This is achieved by altering the downstream boundary conditions to simulate the influence of a tsunami surge propagation event. A sensitivity analysis is conducted on the model parameters. The study will assist in tsunami hazard modeling and mitigation in areas where tsunami surge propagation is a concern to communities located along rivers.

  9. Diatoms in Historical Tsunami Deposits, Northern California, USA

    NASA Astrophysics Data System (ADS)

    Hemphill-Haley, E.; Loofbourrow, C.

    2013-12-01

    A fundamental challenge in using microfossils to differentiate paleotsunami deposits from those of other sources (storms, floods) is to identify characteristics that favor one mode of deposition over the other. The silt- to sand-size siliceous hard parts (valves) of diatoms are commonly found as transported particles in tsunami deposits, but logically, may also be found in other types of coastal deposits of the same grain size. To date, observations on diatom preservation and provenance have been invoked as supporting evidence for paleotsunami deposits. These observations can be tested and refined by detailed observations of diatom assemblages in recent, well-documented tsunami deposits. As a component of the U.S. Geological Survey Science Application for Risk Reduction (SAFRR) project, diatoms were examined in two historical tsunami deposits on the central and northern California coast: the 1946 deposit on the north end of Half Moon Bay (37.5°N) and the 1964 deposit about 10 km south of Crescent City (41.7°N). Both tsunamis were the result of distant-source events across the Pacific Ocean from California: the M 8.1 Eastern Aleutians Islands earthquake (1946) and the M 9.2 Alaska earthquake (1964). At both localities tsunami inundation was documented by eyewitness accounts. The deposits are now preserved in the shallow subsurface as ~1-10 cm thick layers of silt and sand intercalated in peaty marsh or clay-rich lagoon deposits. These historical tsunami deposits are particularly useful for documenting characteristics of entrained diatom assemblages for comparison to paleotsunami deposits. First, the deposits consist of mostly fine sand and silt, and therefore are an appropriate particle size for containing diatoms. Second, although they are recent enough to have been documented by eyewitness accounts, they are also old enough to have been altered by natural geological processes (e.g., burial, compaction, taphonomic affects on diatom valves) as would be found in

  10. Chlorinated hydrocarbons in flatfishes from the Southern California, USA, Bight

    SciTech Connect

    Schiff, K.; Allen, M.J.

    2000-06-01

    Although inputs of chlorinated hydrocarbon compounds to the Southern California Bight (SCB) are presently low, historical deposits represent a source of bioaccumulation potential to sediment-associated fauna. To assess this bioaccumulation potential, 14 chlorinated hydrocarbon classes were measured in livers of three species of flatfish collected from 63 randomly selected sites on the coastal shelf between Point Conception and the United States-Mexico international border. Tissue contamination was widespread throughout the SCB, but was limited to just two chlorinated hydrocarbon classes. Virtually 100% of Pacific sanddab (Citharichthys sordidus) and longfin sanddab (Citharichthys xanthostigma) populations were estimated to be contaminated with dichlorodiphenyltrichloroethane (total DDT = sum of o.p{prime} and p,p{prime} isomers of DDT + dichlorodiphenyldichloroethylene [DDE] + dichlorodiphenyldichloroethane [DDD]) and/or polychlorinated biphenyls (total PCBs). Total DDT also contaminated the majority (64%) of the Dover sole (Microstomus pacificus) population in the SCB. Total PCB measurements in tissues of SCB flatfish were dominated by 12 congeners (52, 66, 87, 101, 105, 118, 128, 138, 153, 170, 180, and 187), which averaged 95% of the combined mass of the 27 congeners analyzed. Sediment concentrations accounted for most of the variability observed in tissue concentrations for 8 of these 12 congeners and total PCBs. Normalized sediment concentrations were also significantly correlated to normalized tissue concentrations for total DDT and p,p{prime}-DDE. Tissue concentrations measured in this study from reference areas of the SCB were compared to tissue concentrations measured form reference areas in studies conducted in 1977 and 1985. Total DDT and total PCB liver concentrations were found to have decreased one to two orders of magnitude in pacific and longfin sanddabs between 1985 and 1994. Total DDT and total PCB liver concentrations decreased 5- to 35-fold in

  11. Establishment Failure in Biological Invasions: A Case History of Littorina littorea in California, USA

    PubMed Central

    Chang, Andrew L.; Blakeslee, April M. H.; Miller, A. Whitman; Ruiz, Gregory M.

    2011-01-01

    Background The early stages of biological invasions are rarely observed, but can provide significant insight into the invasion process as well as the influence vectors have on invasion success or failure. Methodology/Principal Findings We characterized three newly discovered populations of an introduced gastropod, Littorina littorea (Linné, 1758), in California, USA, comparing them to potential source populations in native Europe and the North American East Coast, where the snail is also introduced. Demographic surveys were used to assess spatial distribution and sizes of the snail in San Francisco and Anaheim Bays, California. Mitochondrial DNA was sequenced and compared among these nascent populations, and various populations from the North American East Coast and Europe, to characterize the California populations and ascertain their likely source. Demographic and genetic data were considered together to deduce likely vectors for the California populations. We found that the three large California L. littorea populations contained only adult snails and had unexpectedly high genetic diversity rather than showing an extreme bottleneck as typically expected in recent introductions. Haplotype diversity in Californian populations was significantly reduced compared to European populations, but not compared to East Coast populations. Genetic analyses clearly suggested the East Coast as the source region for the California introductions. Conclusions and Significance The California L. littorea populations were at an early, non-established phase of invasion with no evidence of recruitment. The live seafood trade is the most likely invasion vector for these populations, as it preferentially transports large numbers of adult L. littorea, matching the demographic structure of the introduced California L. littorea populations. Our results highlight continued operation of live seafood trade vectors and the influence of vectors on the demographic and genetic structure of the

  12. Earthquakes, Tsunamis, and Storms Recorded at Crescent City, California, USA

    NASA Astrophysics Data System (ADS)

    Kelsey, H. M.; Hemphill-Haley, E.; Loofbourrow, C.; Caldwell, D. J.; Graehl, N. A.; Robinson, M.

    2015-12-01

    Stratigraphic evidence for coseismic land-level change, tsunamis, and storms is found beneath freshwater marshes in coastal northern California at Crescent City (CC). Previous studies at CC have focused on tsunamis, including the 1964 farfield tsunami from the Alaska earthquake, and nearfield tsunamis from earthquakes in the Cascadia subduction zone (CSZ). In addition to new data on tsunami inundation and coseismic land-level change, evidence for deposition by large storms shows another significant coastal hazard for the area. Our results are from three freshwater wetland sites at CC: Marhoffer Creek, Elk Creek, and Sand Mine. Marhoffer Creek marsh is adjacent to the coast about 5 km north of CC, and at an elevation of > 3.4 m above NAVD88 (>1 m above highest tides). C-14 and diatom data show it has been a freshwater wetland for at least the past 1,800 yr. We identify tsunami deposits associated with two CSZ earthquakes (1700 C.E. and 1,650 yr BP) at Marhoffer Creek. Diatom data show that coseismic subsidence accompanied the 1700 C.E. earthquake; the tsunami deposit from that event extends 550 m inland from the beach. Cs-137 data show that thin sand layers about 70 m from the beach and 20 cm below the marsh surface were deposited by the farfield tsunami in 1964. Intercalated between the 1964 and 1700 tsunami deposits, and extending as far inland as the 1964 deposit, are storm deposits consisting of discontinuous layers of sand and detrital peat. The deposits are found in an interval about 0.5 m thick, and are perched at elevations above the highest winter tides. We surmise that at least some of these deposits record the catastrophic ARkStorm of 1861-1862. At Elk Creek wetland, diatom data confirm coseismic subsidence in 1700 in addition to tsunami deposition. The 1964 tsunami deposit is thin and found only proximal to the Elk Creek channel. At Sand Mine marsh, association with coseismic subsidence is used to differentiate CSZ tsunamis in a complex ~100 m wide

  13. Hydro-economic analysis of groundwater pumping for irrigated agriculture in California's Central Valley, USA

    NASA Astrophysics Data System (ADS)

    Medellín-Azuara, Josué; MacEwan, Duncan; Howitt, Richard E.; Koruakos, George; Dogrul, Emin C.; Brush, Charles F.; Kadir, Tariq N.; Harter, Thomas; Melton, Forrest; Lund, Jay R.

    2015-09-01

    As in many places, groundwater in California (USA) is the major alternative water source for agriculture during drought, so groundwater's availability will drive some inevitable changes in the state's water management. Currently, agricultural, environmental, and urban uses compete for groundwater, resulting in substantial overdraft in dry years with lowering of water tables, which in turn increases pumping costs and reduces groundwater pumping capacity. In this study, SWAP (an economic model of agricultural production and water use in California) and C2VISim (the California Department of Water Resources groundwater model for California's Central Valley) are connected. This paper examines the economic costs of pumping replacement groundwater during drought and the potential loss of pumping capacity as groundwater levels drop. A scenario of three additional drought years continuing from 2014 show lower water tables in California's Central Valley and loss of pumping capacity. Places without access to groundwater and with uncertain surface-water deliveries during drought are the most economically vulnerable in terms of crop revenues, employment and household income. This is particularly true for Tulare Lake Basin, which relies heavily on water imported from the Sacramento-San Joaquin Delta. Remote-sensing estimates of idle agricultural land between 2012 and 2014 confirm this finding. Results also point to the potential of a portfolio approach for agriculture, in which crop mixing and conservation practices have substantial roles.

  14. Random forest models for the probable biological condition of streams and rivers in the USA

    EPA Science Inventory

    The National Rivers and Streams Assessment (NRSA) is a probability based survey conducted by the US Environmental Protection Agency and its state and tribal partners. It provides information on the ecological condition of the rivers and streams in the conterminous USA, and the ex...

  15. Spatial prediction models for the probable biological condition of streams and rivers in the USA

    EPA Science Inventory

    The National Rivers and Streams Assessment (NRSA) is a probability-based survey conducted by the US Environmental Protection Agency and its state and tribal partners. It provides information on the ecological condition of the rivers and streams in the conterminous USA, and the ex...

  16. UHF RiverSonde observations of water surface velocity at Threemile Slough, California

    USGS Publications Warehouse

    Teague, C.C.; Barrick, D.E.; Lilleboe, P.M.; Cheng, R.T.; Ruhl, C.A.

    2005-01-01

    A UHF RiverSonde system, operating near 350 MHz, has been in operation at Threemile Slough in central California, USA since September 2004. The water in the slough is dominated by tidal effects, with flow reversals four times a day and a peak velocity of about 0.8 m/s in each direction. Water level and water velocity are continually measured by the U. S. Geological Survey at the experiment site. The velocity is measured every 15 minutes by an ultrasonic velocity meter (UVM) which determines the water velocity from two-way acoustic propagation time-difference measurements made across the channel. The RiverSonde also measures surface velocity every 15 minutes using radar resonant backscatter techniques. Velocity and water level data are retrieved through a radio data link and a wideband internet connection. Over a period of several months, the radar-derived mean surface velocity has been very highly correlated with the UVM index velocity several meters below the surface, with a coefficient of determination R2 of 0.976 and an RMS difference of less than 10 cm/s. The wind has a small but measurable effect on the velocities measured by both instruments. In addition to the mean surface velocity across the channel, the RiverSonde system provides an estimate of the cross-channel variation of the surface velocity. ?? 2005 IEEE.

  17. Effects of river regulation on aeolian landscapes, Colorado River, southwestern USA

    USGS Publications Warehouse

    Draut, Amy E.

    2012-01-01

    Connectivity between fluvial and aeolian sedimentary systems plays an important role in the physical and biological environment of dryland regions. This study examines the coupling between fluvial sand deposits and aeolian dune fields in bedrock canyons of the arid to semiarid Colorado River corridor, southwestern USA. By quantifying significant differences between aeolian landscapes with and without modern fluvial sediment sources, this work demonstrates for the first time that the flow- and sediment-limiting effects of dam operations affect sedimentary processes and ecosystems in aeolian landscapes above the fluvial high water line. Dune fields decoupled from fluvial sand supply have more ground cover (biologic crust and vegetation) and less aeolian sand transport than do dune fields that remain coupled to modern fluvial sand supply. The proportion of active aeolian sand area also is substantially lower in a heavily regulated river reach (Marble–Grand Canyon, Arizona) than in a much less regulated reach with otherwise similar environmental conditions (Cataract Canyon, Utah). The interconnections shown here among river flow and sediment, aeolian sand transport, and biologic communities in aeolian dunes demonstrate a newly recognized means by which anthropogenic influence alters dryland environments. Because fluvial–aeolian coupling is common globally, it is likely that similar sediment-transport connectivity and interaction with upland ecosystems are important in other dryland regions to a greater degree than has been recognized previously.

  18. Optical water quality of a blackwater river estuary: the Lower St. Johns River, Florida, USA

    NASA Astrophysics Data System (ADS)

    Gallegos, Charles L.

    2005-04-01

    This paper reports measurements of absorption and scattering coefficients in relation to standard water quality measurements in the St. Johns River (Florida, USA), a blackwater river in which phytoplankton chlorophyll and non-algal particulates as well as colored dissolved organic matter (CDOM) contribute substantially to the inherent optical properties of the water. Extremely high concentrations of CDOM in this river present special problems for the measurement of inherent optical properties, such as the presence of very fine particulate matter that passes through most glass fiber filters. Empirical relationships are presented for estimating true dissolved absorption at very high CDOM concentrations. Specific-absorption and -scattering coefficients of suspended particulate matter varied widely, but appeared to decline steadily with salinity at salinities above 5, consistent with increasing influence of large-sized, unconsolidated mineral particulates with increasing tidal energy near the estuary mouth. Relationships are given for prediction of inherent optical properties from water quality concentrations for use in radiative transfer modeling, and changes in water quality measurements are recommended that can avoid the need for empirical corrections.

  19. Effects of river regulation on aeolian landscapes, Colorado River, southwestern USA

    NASA Astrophysics Data System (ADS)

    Draut, Amy E.

    2012-06-01

    Connectivity between fluvial and aeolian sedimentary systems plays an important role in the physical and biological environment of dryland regions. This study examines the coupling between fluvial sand deposits and aeolian dune fields in bedrock canyons of the arid to semiarid Colorado River corridor, southwestern USA. By quantifying significant differences between aeolian landscapes with and without modern fluvial sediment sources, this work demonstrates for the first time that the flow- and sediment-limiting effects of dam operations affect sedimentary processes and ecosystems in aeolian landscapes above the fluvial high water line. Dune fields decoupled from fluvial sand supply have more ground cover (biologic crust and vegetation) and less aeolian sand transport than do dune fields that remain coupled to modern fluvial sand supply. The proportion of active aeolian sand area also is substantially lower in a heavily regulated river reach (Marble-Grand Canyon, Arizona) than in a much less regulated reach with otherwise similar environmental conditions (Cataract Canyon, Utah). The interconnections shown here among river flow and sediment, aeolian sand transport, and biologic communities in aeolian dunes demonstrate a newly recognized means by which anthropogenic influence alters dryland environments. Because fluvial-aeolian coupling is common globally, it is likely that similar sediment-transport connectivity and interaction with upland ecosystems are important in other dryland regions to a greater degree than has been recognized previously.

  20. Ecosystem Services of Rivers: The Don River (Russian Federation) and the Roanoke River (USA)

    EPA Science Inventory

    The concept of ecosystem services recognizes the services, and benefits, provided to people by ecosystems. River systems provide many services to people, including freshwater provisioning, carbon storage, fisheries, recreation, transportation, and biodiversity. Here, we review th...

  1. Genotypes and phylogeographical relationships of infectious hematopoietic necrosis virus in California, USA

    USGS Publications Warehouse

    Kelley, G.O.; Bendorf, C.M.; Yun, S.C.; Kurath, G.; Hedrick, R.P.

    2007-01-01

    Infectious hematopoietic necrosis virus (IHNV) contains 3 major genogroups in North America with discreet geographic ranges designated as upper (U), middle (M), and lower (L). A comprehensive genotyping of 237 IHNV isolates from hatchery and wild salmonids in California revealed 25 different sequence types (a to y) all in the L genogroup; specifically, the genogroup contained 14 sequence types that were unique to individual isolates as well as 11 sequence types representing 2 or more identical isolates. The most evident trend was the phylogenetic and geographical division of the L genogroup into 2 distinct subgroups designated as LI and LII. Isolates within Subgroup LI were primarily found within waterways linked to southern Oregon and northern California coastal rivers. Isolates in Subgroup LII were concentrated within inland valley watersheds that included the Sacramento River, San Joaquin River, and their tributaries. The temporal and spatial patterns of virus occurrence suggested that infections among adult Chinook salmon in the hatchery or that spawn in the river are a major source of virus potentially infecting other migrating or resident salmonids in California. Serum neutralization results of the California isolates of IHNV corroborated a temporal trend of sequence divergence; specifically, 2 progressive shifts in which more recent virus isolates represent new serotypes. A comparison of the estimates of divergence rates for Subgroup LI (1 ?? ICT5 mutations per nucleotide site per year) indicated stasis similar to that observed in the U genogroup, while the Subgroup LII rate (1 ?? 10 3 mutations per nucleotide site per year) suggested a more active evolution similar to that of the M genogroup. ?? Inter-Research 2007.

  2. Water-quality assessment of the American River, California

    USGS Publications Warehouse

    Shulters, M.V.

    1982-01-01

    Based on an analysis of water-quality data from more than 168 sites, the American River was found to be of overall good quality and suitable for all beneficial uses specified by the State of California, even though its natural condition has been altered by man 's activities in the basin. Time trend analyses indicate an increase in specific conductance (dissolved solids), hardness, and alkalinity over the past 20 years in the lower American River near Sacramento downstream from treated effluent and urban runoff sources. Most violations of specific water quality objectives for the basin have occurred in this segment. Water-quality conditions in the segment are expected to improve in 1982 when sewage treatment facility discharges will be discontinued. Potential water-quality problems in the upper American River basin could result from recreational overuse, improper land-use or poorly managed mining operations. Recreational overuse and increased urban runoff are the principal threats to water quality in the lower American River. Proposed monitoring activities include low-flow investigations on the lower American to measure diurnal variations in water-quality characteristics and studies in the uppper basin to determine the impact of increasing recreation and development as well as the effects of mine discharge. (USGS)

  3. Rates and risk factors for Coccidioidomycosis among prison inmates, California, USA, 2011.

    PubMed

    Wheeler, Charlotte; Lucas, Kimberley D; Mohle-Boetani, Janet C

    2015-01-01

    In California, coccidioidomycosis is a disease acquired by inhaling spores of Coccidioides immitis, a fungus found in certain arid regions, including the San Joaquin Valley, California, USA, where 8 state prisons are located. During 2011, we reviewed coccidioidomycosis rates at 2 of the prisons that consistently report >80% of California's inmate cases and determined inmate risk factors for primary, severe (defined as pulmonary coccidioidomycosis requiring >10 hospital days), and disseminated coccidioidomycosis (defined by hospital discharge International Classification of Disease, Ninth Revision code). Inmates of African American ethnicity who were >40 years of age were at significantly higher risk for primary coccidioidomycosis than their white counterparts (odds ratio = 2.0, 95% CI 1.5-2.8). Diabetes was a risk factor for severe pulmonary coccidioidomycosis, and black race a risk factor for disseminated disease. These findings contributed to a court decision mandating exclusion of black inmates and inmates with diabetes from the 2 California prisons with the highest rates of coccidioidomycosis. PMID:25533149

  4. ALTERED DEVELOPMENT AND REPRODUCTION IN MOSQUITOFISH EXPOSED TO PULP AND PAPER MILL EFFLUENT IN THE FENHOLLOW RIVER, FLORIDA USA

    EPA Science Inventory

    Female mosquitofish exposed to pulp and paper mill effluent (PME) in the Fenholloway River, Florida, USA have masculinized secondary sex characteristics and altered aromatase enzyme activity. We and others have shown that the Fenholloway River PME contains androgenic and progesto...

  5. Environmental Setting of the Lower Merced River Basin, California

    USGS Publications Warehouse

    Gronberg, Jo Ann M.; Kratzer, Charles R.

    2006-01-01

    In 1991, the U.S. Geological Survey began to study the effects of natural and anthropogenic influences on the quality of ground water, surface water, biology, and ecology as part of the National Water-Quality Assessment (NAWQA) Program. As part of this program, the San Joaquin-Tulare Basins study unit is assessing parts of the lower Merced River Basin, California. This report provides descriptions of natural and anthropogenic features of this basin as background information to assess the influence of these and other factors on water quality. The lower Merced River Basin, which encompasses the Mustang Creek Subbasin, gently slopes from the northeast to the southwest toward the San Joaquin River. The arid to semiarid climate is characterized by hot summers (highs of mid 90 degrees Fahrenheit) and mild winters (lows of mid 30 degrees Fahrenheit). Annual precipitation is highly variable, with long periods of drought and above normal precipitation. Population is estimated at about 39,230 for 2000. The watershed is predominately agricultural on the valley floor. Approximately 2.2 million pounds active ingredient of pesticides and an estimated 17.6 million pounds active ingredient of nitrogen and phosphorus fertilizer is applied annually to the agricultural land.

  6. Characterization of extreme precipitation within atmospheric river events over California

    NASA Astrophysics Data System (ADS)

    Jeon, S.; Prabhat; Byna, S.; Gu, J.; Collins, W. D.; Wehner, M. F.

    2015-11-01

    Atmospheric rivers (ARs) are large, spatially coherent weather systems with high concentrations of elevated water vapor. These systems often cause severe downpours and flooding over the western coastal United States - and with the availability of more atmospheric moisture in the future under global warming we expect ARs to play an important role as potential causes of extreme precipitation changes. Therefore, we aim to investigate changes in extreme precipitation properties correlated with AR events in a warmer climate, which are large-scale meteorological patterns affecting the weather and climate of California. We have recently developed the TECA (Toolkit for Extreme Climate Analysis) software for automatically identifying and tracking features in climate data sets. Specifically, we can now identify ARs that make landfall on the western coast of North America. Based on this detection procedure, we can investigate the impact of ARs by exploring the spatial extent of AR precipitation using climate model (CMIP5) simulations and characterize spatial patterns of dependence for future projections between AR precipitation extremes under climate change within the statistical framework. Our results show that AR events in the future RCP (Representative Concentration Pathway)8.5 scenario (2076-2100) tend to produce heavier rainfall with higher frequency and longer days than events from the historical run (1981-2005). We also find that the dependence between extreme precipitation events has a shorter spatial range, within localized areas in California, under the high future emissions scenario than under the historical run.

  7. Characterization of extreme precipitation within atmospheric river events over California

    DOE PAGESBeta

    Jeon, S.; Prabhat,; Byna, S.; Gu, J.; Collins, W. D.; Wehner, M. F.

    2015-11-17

    Atmospheric rivers (ARs) are large, spatially coherent weather systems with high concentrations of elevated water vapor. These systems often cause severe downpours and flooding over the western coastal United States – and with the availability of more atmospheric moisture in the future under global warming we expect ARs to play an important role as potential causes of extreme precipitation changes. Therefore, we aim to investigate changes in extreme precipitation properties correlated with AR events in a warmer climate, which are large-scale meteorological patterns affecting the weather and climate of California. We have recently developed the TECA (Toolkit for Extreme Climatemore » Analysis) software for automatically identifying and tracking features in climate data sets. Specifically, we can now identify ARs that make landfall on the western coast of North America. Based on this detection procedure, we can investigate the impact of ARs by exploring the spatial extent of AR precipitation using climate model (CMIP5) simulations and characterize spatial patterns of dependence for future projections between AR precipitation extremes under climate change within the statistical framework. Our results show that AR events in the future RCP (Representative Concentration Pathway)8.5 scenario (2076–2100) tend to produce heavier rainfall with higher frequency and longer days than events from the historical run (1981–2005). We also find that the dependence between extreme precipitation events has a shorter spatial range, within localized areas in California, under the high future emissions scenario than under the historical run.« less

  8. Sediment toxicity in mid-continent great rivers (USA)

    EPA Science Inventory

    In this study, 530 sediment samples were collected from 447 sites between 2004 and 2006 at randomly selected shoreline sites along the main channel of the Ohio, Missouri and Upper Mississippi Rivers as part of the Environmental Monitoring and Assessment Program for Great Rivers E...

  9. Channel evolution on the dammed Elwha River, Washington, USA

    USGS Publications Warehouse

    Draut, A.E.; Logan, J.B.; Mastin, M.C.

    2011-01-01

    Like many rivers in the western U.S., the Elwha River, Washington, has changed substantially over the past century in response to natural and human forcing. The lower river is affected by two upstream dams that are slated for removal as part of a major river restoration effort. In preparation for studying the effects of dam removal, we present a comprehensive field and aerial photographic analysis of dam influence on an anabranching, gravel-bed river. Over the past century with the dams in place, loss of the upstream sediment supply has caused spatial variations in the sedimentary and geomorphic character of the lower Elwha River channel. Bed sediment is armored and better sorted than on the naturally evolving bed upstream of the dams. On time scales of flood seasons, the channel immediately below the lower dam is fairly stable, but progresses toward greater mobility downstream such that the lowermost portion of the river responded to a recent 40-year flood with bank erosion and bed-elevation changes on a scale approaching that of the natural channel above the dams. In general, channel mobility in the lowest 4 km of the Elwha River has not decreased substantially with time. Enough fine sediment remains in the floodplain that – given sufficient flood forcing – the channel position, sinuosity, and braiding index change substantially. The processes by which this river accesses new fine sediment below the dams (rapid migration into noncohesive banks and avulsion of new channels) allow it to compensate for loss of upstream sediment supply more readily than would a dammed river with cohesive banks or a more limited supply of alluvium. The planned dam removal will provide a valuable opportunity to evaluate channel response to the future restoration of natural upstream sediment supply.

  10. Mapping the biological condition of USA rivers and streams

    EPA Science Inventory

    We predicted the probable (pr) biological condition (BC) of ~5.4 million km of stream within the conterminous USA (CONUS). National maps of prBC could provide an important tool for prioritizing monitoring and restoration of streams. The USEPA uses a spatially balanced survey desi...

  11. Using GIS and logistic regression to estimate agricultural chemical concentrations in rivers of the midwestern USA

    USGS Publications Warehouse

    Battaglin, W.A.

    1996-01-01

    Agricultural chemicals (herbicides, insecticides, other pesticides and fertilizers) in surface water may constitute a human health risk. Recent research on unregulated rivers in the midwestern USA documents that elevated concentrations of herbicides occur for 1-4 months following application in spring and early summer. In contrast, nitrate concentrations in unregulated rivers are elevated during the fall, winter and spring. Natural and anthropogenic variables of river drainage basins, such as soil permeability, the amount of agricultural chemicals applied or percentage of land planted in corn, affect agricultural chemical concentrations in rivers. Logistic regression (LGR) models are used to investigate relations between various drainage basin variables and the concentration of selected agricultural chemicals in rivers. The method is successful in contributing to the understanding of agricultural chemical concentration in rivers. Overall accuracies of the best LGR models, defined as the number of correct classifications divided by the number of attempted classifications, averaged about 66%.

  12. Hydrometeorology Testbed in the American River Basin of Northern California

    NASA Astrophysics Data System (ADS)

    Kingsmill, D.; Lundquist, J.; Jorgensen, D.; McGinley, J.; Werner, K.

    2006-12-01

    In California, most precipitation occurs in the winter, as a mixture of rain at lower elevations and snow in the higher mountains. Storms from the Pacific carry large amounts of moisture, and put people and property at risk from flooding because of the vast urban development and infrastructure in low-lying areas of the central valley of California. Improved flood prediction at finer spatial and temporal resolutions can help minimize these risks. The first step is to accurately measure and predict spatially-distributed precipitation. This is particularly true for river basins with complex orography where the processes that lead to the development of precipitation and determine its distribution and fate on the ground are not well understood. To make progress in this important area, the U.S. National Oceanic and Atmospheric Administration (NOAA) is leading a Hydrometeorology Testbed (HMT) effort designed to accelerate the testing and infusion of new technologies, models, and scientific results from the research community into daily forecasting operations. HMT is a national effort (http://hmt.noaa.gov) that will be implemented in different regions of the U.S. over the next decade. In each region, the focus will be on individual experimental test basins. The first full-scale implementation of HMT, called HMT-West, targets northern California's flood-vulnerable American River Basin (4740 km2) on the west slopes of the Sierra Nevada between Sacramento and Lake Tahoe. The deployment strategy is focused on the North Fork of the basin (875 km2), which is the least- controlled portion of the entire catchment. This basin was selected as a test basin because it has reliable streamflow records dating back to 1941 and has been well characterized by prior field studies (e.g. the Sierra Cooperative Pilot Project) and modeling efforts, focusing on both short-term operations and long-term climate scenarios. Intensive field activities in the North Fork of the American River started in

  13. Temporal and spatial variation of atmospherically deposited organic contaminants at high elevation in Yosemite National Park, California, USA

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Atmospherically deposited organic contaminants in the Sierra Nevada Mountains of California, USA, have exceeded some thresholds of concern, yet the distributions of contaminants in the mountains are not well known and there is little knowledge of temporal variation. The present study, (1) evaluated...

  14. ALIEN SPECIES IMPORTANTANCE IN NATIVE VEGETATION ALONG WADEABLE STREAMS, JOHN DAY RIVER BASIN, OREGON, USA

    EPA Science Inventory

    We evaluated the importance of alien species in existing vegetation along wadeable streams of a large, topographically diverse river basin in eastern Oregon, USA; sampling 165 plots (30 × 30 m) across 29 randomly selected 1-km stream reaches. Plots represented eight streamside co...

  15. PREDICTION OF CONTAMINATED SEDIMENT TRANSPORT IN THE MAURICE RIVER-UNION LAKE, NEW JERSEY, USA

    EPA Science Inventory

    A sediment and contaminant transport model and its application to the Maurice River-Union Lake system in southern New Jersey, USA is described. The application is meant to characterize and forecast sediment and arsenic (As) distributions before and after proposed dredging activit...

  16. PREDICTION OF CONTAMINATED SEDIMENT TRANSPORT IN THE MAURICE RIVER-UNION LAKE, NEW JERSEY, USA

    EPA Science Inventory

    This paper describes a sediment and contaminant transport model and its application to the Maurice River-Union Lake system in southern New Jersey, USA for the purpose of characterizing and forecasting sediment and arsenic distributions before and after proposed dredging activitie...

  17. Recovery of thermophilic Campylobacter by three sampling methods from classified river sites in Northeast Georgia, USA

    Technology Transfer Automated Retrieval System (TEKTRAN)

    It is not clear how best to sample streams for the detection of Campylobacter which may be introduced from agricultural or community land use. Fifteen sites in the watershed of the South Fork of the Broad River (SFBR) in Northeastern Georgia, USA, were sampled in three seasons. Seven sites were cl...

  18. Modeled summer background concentration nutrients and suspended sediment in the mid-continent (USA) great rivers

    EPA Science Inventory

    We used regression models to predict background concentration of four water quality indictors: total nitrogen (N), total phosphorus (P), chloride, and total suspended solids (TSS), in the mid-continent (USA) great rivers, the Upper Mississippi, the Lower Missouri, and the Ohio. F...

  19. A new libelluloid family from the Eocene Green River Formation (Colorado, USA) (Odonata, Anisoptera).

    PubMed

    Zeiri, Asma; Nel, Andre; Garrouste, Romain

    2015-01-01

    The new family Urolibellulidae is proposed for the new genus and species Urolibellula eocenica, based on a fossil dragonfly from the Eocene Green River Formation (USA). This new taxon is considered as the sister group of the extant Libellulidae. As the oldest libellulid dragonfly is dated from the Turonian, the Urolibellulidae should also be at least Late Cretaceous. PMID:26624363

  20. DISTRIBUTION OF AQUATIC OFF-CHANNEL HABITATS AND ASSOCIATED RIPARIAN VEGETATION, WILLAMETTE RIVER, OREGON, USA

    EPA Science Inventory

    The extent of aquatic off-channel habitats such as secondary and side channels, sloughs, and alcoves, have been reduced more than 50% since the 1850s along the upper main stem of the Willamette River, Oregon, USA. Concurrently, the hydrogeomorphic potential, and associated flood...

  1. Geochronology and paleoenvironment of pluvial Harper Lake, Mojave Desert, California, USA

    USGS Publications Warehouse

    Garcia, Anna L.; Knott, Jeffrey R.; Mahan, Shannon; Bright, Jordan

    2014-01-01

    Accurate reconstruction of the paleo-Mojave River and pluvial lake (Harper, Manix, Cronese, and Mojave) system of southern California is critical to understanding paleoclimate and the North American polar jet stream position over the last 500 ka. Previous studies inferred a polar jet stream south of 35°N at 18 ka and at ~ 40°N at 17–14 ka. Highstand sediments of Harper Lake, the upstream-most pluvial lake along the Mojave River, have yielded uncalibrated radiocarbon ages ranging from 24,000 to > 30,000 14C yr BP. Based on geologic mapping, radiocarbon and optically stimulated luminescence dating, we infer a ~ 45–40 ka age for the Harper Lake highstand sediments. Combining the Harper Lake highstand with other Great Basin pluvial lake/spring and marine climate records, we infer that the North American polar jet stream was south of 35°N about 45–40 ka, but shifted to 40°N by ~ 35 ka. Ostracodes (Limnocythere ceriotuberosa) from Harper Lake highstand sediments are consistent with an alkaline lake environment that received seasonal inflow from the Mojave River, thus confirming the lake was fed by the Mojave River. The ~ 45–40 ka highstand at Harper Lake coincides with a shallowing interval at downstream Lake Manix.

  2. Geochronology and paleoenvironment of pluvial Harper Lake, Mojave Desert, California, USA

    NASA Astrophysics Data System (ADS)

    Garcia, Anna L.; Knott, Jeffrey R.; Mahan, Shannon A.; Bright, Jordon

    2014-03-01

    Accurate reconstruction of the paleo-Mojave River and pluvial lake (Harper, Manix, Cronese, and Mojave) system of southern California is critical to understanding paleoclimate and the North American polar jet stream position over the last 500 ka. Previous studies inferred a polar jet stream south of 35°N at 18 ka and at ~ 40°N at 17-14 ka. Highstand sediments of Harper Lake, the upstream-most pluvial lake along the Mojave River, have yielded uncalibrated radiocarbon ages ranging from 24,000 to > 30,000 14C yr BP. Based on geologic mapping, radiocarbon and optically stimulated luminescence dating, we infer a ~ 45-40 ka age for the Harper Lake highstand sediments. Combining the Harper Lake highstand with other Great Basin pluvial lake/spring and marine climate records, we infer that the North American polar jet stream was south of 35°N about 45-40 ka, but shifted to 40°N by ~ 35 ka. Ostracodes (Limnocythere ceriotuberosa) from Harper Lake highstand sediments are consistent with an alkaline lake environment that received seasonal inflow from the Mojave River, thus confirming the lake was fed by the Mojave River. The ~ 45-40 ka highstand at Harper Lake coincides with a shallowing interval at downstream Lake Manix.

  3. Liquefaction caused by the 2009 Olancha, California (USA), M5.2 earthquake

    USGS Publications Warehouse

    Holzer, T.L.; Jayko, A.S.; Hauksson, E.; Fletcher, J.P.B.; Noce, T.E.; Bennett, M.J.; Dietel, C.M.; Hudnut, K.W.

    2010-01-01

    The October 3, 2009 (01:16:00 UTC), Olancha M5.2 earthquake caused extensive liquefaction as well as permanent horizontal ground deformation within a 1.2 km2area earthquake in Owens Valley in eastern California (USA). Such liquefaction is rarely observed during earthquakes of M ≤ 5.2. We conclude that subsurface conditions, not unusual ground motion, were the primary factors contributing to the liquefaction. The liquefaction occurred in very liquefiable sands at shallow depth (< 2 m) in an area where the water table was near the land surface. Our investigation is relevant to both geotechnical engineering and geology. The standard engineering method for assessing liquefaction potential, the Seed–Idriss simplified procedure, successfully predicted the liquefaction despite the small earthquake magnitude. The field observations of liquefaction effects highlight a need for caution by earthquake geologists when inferring prehistoric earthquake magnitudes from paleoliquefaction features because small magnitude events may cause such features.

  4. Burn severity and non-native species in Yosemite National Park, California, USA

    USGS Publications Warehouse

    Kaczynski, Kristen M.; Beatty, Susan W.; van Wagtendonk, Jan W.; Marshall, Kristin N.

    2011-01-01

    We examined non-native species density three years after the Tuolumne Fire, which burned 1540 ha in upper montane forest in California, USA. We sampled 60 plots, stratified by burn severity (low, moderate, or high severity) and landscape position (lowland or upland). We detected non-native species in 8 of 11 (73 %) of high severity lowland sites and in 5 of 10 (50 %) of moderate severity lowland sites but, overall, richness and abundance was low. We detected only five non-native species, of which bull thistle (Cirsium vulgare [Savi] Ten.) was the most common. Although non-native abundance is currently low, we recommend continued low intensity monitoring, especially on high severity burned lowland sites.

  5. Tick-borne Relapsing Fever and Borrelia hermsii, Los Angeles County, California, USA

    PubMed Central

    Raffel, Sandra J.; Schrumpf, Merry E.; Webster, Larry S.; Marques, Adriana R.; Spano, Robyn; Rood, Michael; Burns, Joe; Hu, Renjie

    2009-01-01

    The primary cause of tick-borne relapsing fever in western North America is Borrelia hermsii, a rodent-associated spirochete transmitted by the fast-feeding soft tick Ornithodoros hermsi. We describe a patient who had an illness consistent with relapsing fever after exposure in the mountains near Los Angeles, California, USA. The patient’s convalescent-phase serum was seropositive for B. hermsii but negative for several other vector-borne bacterial pathogens. Investigations at the exposure site showed the presence of O. hermsi ticks infected with B. hermsii and the presence of rodents that were seropositive for the spirochete. We determined that this tick-borne disease is endemic to the San Gabriel Mountains near the greater Los Angeles metropolitan area. PMID:19624916

  6. Hantavirus infections among overnight visitors to Yosemite National Park, California, USA, 2012.

    PubMed

    Núñez, Jonathan J; Fritz, Curtis L; Knust, Barbara; Buttke, Danielle; Enge, Barryett; Novak, Mark G; Kramer, Vicki; Osadebe, Lynda; Messenger, Sharon; Albariño, César G; Ströher, Ute; Niemela, Michael; Amman, Brian R; Wong, David; Manning, Craig R; Nichol, Stuart T; Rollin, Pierre E; Xia, Dongxiang; Watt, James P; Vugia, Duc J

    2014-03-01

    In summer 2012, an outbreak of hantavirus infections occurred among overnight visitors to Yosemite National Park in California, USA. An investigation encompassing clinical, epidemiologic, laboratory, and environmental factors identified 10 cases among residents of 3 states. Eight case-patients experienced hantavirus pulmonary syndrome, of whom 5 required intensive care with ventilatory support and 3 died. Staying overnight in a signature tent cabin (9 case-patients) was significantly associated with becoming infected with hantavirus (p<0.001). Rodent nests and tunnels were observed in the foam insulation of the cabin walls. Rodent trapping in the implicated area resulted in high trap success rate (51%), and antibodies reactive to Sin Nombre virus were detected in 10 (14%) of 73 captured deer mice. All signature tent cabins were closed and subsequently dismantled. Continuous public awareness and rodent control and exclusion are key measures in minimizing the risk for hantavirus infection in areas inhabited by deer mice. PMID:24565589

  7. Eremidrilus n. gen. (Annelida, Clitellata, Lumbriculidae) and new species from California, U.S.A.

    USGS Publications Warehouse

    Fend, S.V.; Rodriguez, P.

    2003-01-01

    A new Nearctic lumbriculid genus, Eremidrilus, includes four new California species (E. elegans, E. coyote, E. ritocsi, and E. felini) plus the new combination of Trichodrilus allegheniensis Cook, 1971 from the eastern U.S.A. Eremidrilus has the Trichodrilus arrangement of reproductive organs, but is distinguished by a filiform proboscis and male pores on folded porophores. A combination of other characters distinguishes most Eremidrilus species from most Trichodrilus species: (i) elongate-tubular thin-walled atria, (ii) posterior vasa deferentia forming a loop in XI, (iii) no posterior blood vessels, (iv) nephridia not present in VII. Spermathecae restricted to the first postatrial segment and laterally displaced spermathecal pores differentiate the western Eremidrilus species from the single eastern species. ?? 2003 NRC.

  8. Earliest record of the invasive Foraminifera Trochammina hadai in San Francisco Bay, California, USA

    USGS Publications Warehouse

    McGann, Mary

    2014-01-01

    In 1995, Trochammina hadai, a benthic Foraminifera prevalent in Japanese estuaries, was found in San Francisco Bay, California, USA. Subsequent field investigations determined that the species was also present in nearly all of the major ports and estuaries along the western United States. Because of its widespread colonization, it is of interest to determine when T. hadai first appeared as an invasive in the coastal regions of the North Pacific. In San Francisco Bay, the species was not found in 404 surface samples collected between 1930 and 1981. In 1983, however, a grab sediment sample from one of four sites in the southern portion of the bay contained T. hadai. This site was the most northern of the four and contained 12 specimens of the invasive, comprising 1.5% of the assemblage. This is the earliest appearance on record of T. hadai in San Francisco Bay.

  9. Hantavirus Infections among Overnight Visitors to Yosemite National Park, California, USA, 2012

    PubMed Central

    Núñez, Jonathan J.; Fritz, Curtis L.; Knust, Barbara; Buttke, Danielle; Enge, Barryett; Novak, Mark G.; Kramer, Vicki; Osadebe, Lynda; Messenger, Sharon; Albariño, César G.; Ströher, Ute; Niemela, Michael; Amman, Brian R.; Wong, David; Manning, Craig R.; Nichol, Stuart T.; Rollin, Pierre E.; Xia, Dongxiang; Watt, James P.

    2014-01-01

    In summer 2012, an outbreak of hantavirus infections occurred among overnight visitors to Yosemite National Park in California, USA. An investigation encompassing clinical, epidemiologic, laboratory, and environmental factors identified 10 cases among residents of 3 states. Eight case-patients experienced hantavirus pulmonary syndrome, of whom 5 required intensive care with ventilatory support and 3 died. Staying overnight in a signature tent cabin (9 case-patients) was significantly associated with becoming infected with hantavirus (p<0.001). Rodent nests and tunnels were observed in the foam insulation of the cabin walls. Rodent trapping in the implicated area resulted in high trap success rate (51%), and antibodies reactive to Sin Nombre virus were detected in 10 (14%) of 73 captured deer mice. All signature tent cabins were closed and subsequently dismantled. Continuous public awareness and rodent control and exclusion are key measures in minimizing the risk for hantavirus infection in areas inhabited by deer mice. PMID:24565589

  10. Coupled Teleconnections and River Dynamics for Enhanced Hydrologic Forecasting in the Upper Colorado River Basin USA

    NASA Astrophysics Data System (ADS)

    Matter, M. A.; Garcia, L. A.; Fontane, D. G.

    2005-12-01

    Accuracy of water supply forecasts has improved for some river basins in the western U.S.A. by integrating knowledge of climate teleconnections, such as El Niño/Southern Oscillation (ENSO), into forecasting routines, but in other basins, such as the Colorado River Basin (CRB), forecast accuracy has declined (Pagano et al. 2004). Longer lead time and more accurate seasonal forecasts, particularly during floods or drought, could help reduce uncertainty and risk in decision-making and lengthen the period for planning more efficient and effective strategies for water use and ecosystem management. The goal of this research is to extend the lead time for snowmelt hydrograph estimation by 4-6 months (from spring to the preceding fall), and at the same time increase the accuracy of snowmelt runoff estimates in the Upper CRB (UCRB). We hypothesize that: (1) UCRB snowpack accumulation and melt are driven by large scale climate modes, including ENSO, PDO and AMO, that establish by fall and persist into early spring; (2) forecast analysis may begin in the fall prior to the start of the primary snow accumulation period and when energy to change the climate system is decreasing; and (3) between fall and early spring, streamflow hydrographs will amplify precipitation and temperature signals, and thus will evolve characteristically in response to wet, dry or average hydroclimatic conditions. Historical in situ records from largely unregulated river reaches and undeveloped time periods of the UCRB are used to test this hypothesis. Preliminary results show that, beginning in the fall (e.g., October or November) streamflow characteristics, including magnitude, rate of change and variability, as well as timing and magnitude of fall/early winter and late winter/early spring season flow volumes, are directly correlated with the magnitude of the upcoming snowmelt runoff (or annual basin yield). The use of climate teleconnections to determine characteristic streamflow responses in the

  11. Late Pleistocene braided rivers of the Atlantic Coastal Plain, USA

    NASA Astrophysics Data System (ADS)

    Leigh, David S.; Srivastava, Pradeep; Brook, George A.

    2004-01-01

    Infrared Landsat imagery (band 4) clearly reveals braided river patterns on late Pleistocene terraces of unglaciated rivers in the Atlantic Coastal Plain of the southeastern United States, a region that presently exhibits meandering patterns that have existed throughout the Holocene. These Pleistocene braided patterns provide a unique global example of river responses to late Quaternary climate changes in an unglaciated humid subtropical region at 30-35° north latitude. Detailed morphological and chronological results are given for the Oconee-Altamaha River valley in Georgia and for the Pee Dee River valley in South Carolina, including 15 optically stimulated luminescence (OSL) dates and four radiocarbon dates. Correlative examples are drawn from additional small to large rivers in South- and North Carolina. OSL and radiocarbon ( 14C) dates indicate distinct braiding at 17-30 ka, within oxygen isotope stage 2 (OIS 2), and braiding probably existed at least during parts of OIS 3 and possibly OIS 4 back to ca 70 ka. The chronology suggests that braiding is the more common pattern for the late Quaternary in the southeastern United States. Braided terraces appear to have been graded to lower sea-levels and are onlapped by Holocene floodplain deposits up to 10-60 km from the coast. The braiding probably reflects the response of discharge and sediment yield to generally cooler and drier paleoclimates, which may have had a pronounced runoff season. Sedimentation of eolian dunes on the braid plains is coeval with braiding and supports the conclusion of dry soils and thin vegetation cover during the late Pleistocene. Our chronological data contribute to a body of literature indicating that reliable OSL age estimates can be obtained from quartz-rich bed load sand from braided rivers, based on good correlations with both radiocarbon dates from braided fluvial sediment and OSL dates from stratigraphically correlative eolian sand.

  12. Factors influencing the variation in capture rates of shrews in southern California, USA

    USGS Publications Warehouse

    Laakkonen, J.; Fisher, R.N.; Case, T.J.

    2003-01-01

    We examined the temporal variation in capture rates of shrews Notiosorex crawfordi (Coues, 1877) and Sorex ornatus (Merriam, 1895) in 20 sites representing fragmented and continuous habitats in southern California, USA. In N. crawfordi, the temporal variation was significantly correlated with the mean capture rates. Of the 6 landscape variables analyzed (size of the landscape, size of the sample area, altitude, edge, longitude and latitude), sample area was positively correlated with variation in capture rates of N. crawfordi. In S. ornatus, longitude was negatively correlated with variation in capture rates. Analysis of the effect of precipitation on the short- and long-term capture rates at 2 of the sites showed no correlation between rainfall and capture rates of shrews even though peak number of shrews at both sites were reached during the year of highest amount of rainfall. A key problem confounding capture rates of shrews in southern California is the low overall abundance of both shrew species in all habitats and seasons.

  13. Coccidioidomycosis among Workers Constructing Solar Power Farms, California, USA, 2011-2014.

    PubMed

    Wilken, Jason A; Sondermeyer, Gail; Shusterman, Dennis; McNary, Jennifer; Vugia, Duc J; McDowell, Ann; Borenstein, Penny; Gilliss, Debra; Ancock, Benedict; Prudhomme, Janice; Gold, Deborah; Windham, Gayle C; Lee, Lauren; Materna, Barbara L

    2015-11-01

    Coccidioidomycosis is associated with soil-disruptive work in Coccidioides-endemic areas of the southwestern United States. Among 3,572 workers constructing 2 solar power-generating facilities in San Luis Obispo County, California, USA, we identified 44 patients with symptom onset during October 2011-April 2014 (attack rate 1.2 cases/100 workers). Of these 44 patients, 20 resided in California outside San Luis Obispo County and 10 resided in another state; 9 were hospitalized (median 3 days), 34 missed work (median 22 days), and 2 had disseminated disease. Of the 25 patients who frequently performed soil-disruptive work, 6 reported frequent use of respiratory protection. As solar farm construction in Coccidioides-endemic areas increases, additional workers will probably be exposed and infected unless awareness is emphasized and effective exposure reduction measures implemented, including limiting dust generation and providing respiratory protection. Medical providers, including those in non-Coccidioides-endemic areas, should suspect coccidioidomycosis in workers with compatible illness and report cases to their local health department. PMID:26484688

  14. Application of environmental groundwater tracers at the Sulphur Bank Mercury Mine, California, USA

    USGS Publications Warehouse

    Engle, M.A.; Goff, F.; Jewett, D.G.; Reller, G.J.; Bauman, J.B.

    2008-01-01

    Boron, chloride, sulfate, ??D, ??18O, and 3H concentrations in surface water and groundwater samples from the Sulphur Bank Mercury Mine (SBMM), California, USA were used to examine geochemical processes and provide constraints on evaporation and groundwater flow. SBMM is an abandoned sulfur and mercury mine with an underlying hydrothermal system, adjacent to Clear Lake, California. Results for non-3H tracers (i.e., boron, chloride, sulfate, ??D, and ??18O) identify contributions from six water types at SBMM. Processes including evaporation, mixing, hydrothermal water input and possible isotopic exchange with hydrothermal gases are also discerned. Tritium data indicate that hydrothermal waters and other deep groundwaters are likely pre-bomb (before ???1952) in age while most other waters were recharged after ???1990. A boron-based steady-state reservoir model of the Herman Impoundment pit lake indicates that 71-79% of its input is from meteoric water with the remainder from hydrothermal contributions. Results for groundwater samples from six shallow wells over a 6-month period for ??D and ??18O suggests that water from Herman Impoundment is diluted another 3% to more than 40% by infiltrating meteoric water, as it leaves the site. Results for this investigation show that environmental tracers are an effective tool to understand the SBMM hydrogeologic regime. ?? Springer-Verlag 2007.

  15. Application of environmental groundwater tracers at the Sulphur Bank Mercury Mine, California, USA

    NASA Astrophysics Data System (ADS)

    Engle, Mark A.; Goff, Fraser; Jewett, David G.; Reller, Gregory J.; Bauman, Joel B.

    2008-05-01

    Boron, chloride, sulfate, δD, δ18O, and 3H concentrations in surface water and groundwater samples from the Sulphur Bank Mercury Mine (SBMM), California, USA were used to examine geochemical processes and provide constraints on evaporation and groundwater flow. SBMM is an abandoned sulfur and mercury mine with an underlying hydrothermal system, adjacent to Clear Lake, California. Results for non-3H tracers (i.e., boron, chloride, sulfate, δD, and δ18O) identify contributions from six water types at SBMM. Processes including evaporation, mixing, hydrothermal water input and possible isotopic exchange with hydrothermal gases are also discerned. Tritium data indicate that hydrothermal waters and other deep groundwaters are likely pre-bomb (before ~1952) in age while most other waters were recharged after ~1990. A boron-based steady-state reservoir model of the Herman Impoundment pit lake indicates that 71-79% of its input is from meteoric water with the remainder from hydrothermal contributions. Results for groundwater samples from six shallow wells over a 6-month period for δD and δ18O suggests that water from Herman Impoundment is diluted another 3% to more than 40% by infiltrating meteoric water, as it leaves the site. Results for this investigation show that environmental tracers are an effective tool to understand the SBMM hydrogeologic regime.

  16. Plasma cholinesterase levels of mountain plovers (Charadrius montanus) wintering in central California, USA.

    PubMed

    Iko, William M; Archuleta, Andrew S; Knopf, Fritz L

    2003-01-01

    Declines of over 60% in mountain plover (Charadrius montanus) populations over the past 30 years have made it a species of concern throughout its current range and a proposed species for listing under the U.S. Endangered Species Act. Wintering mountain plovers spend considerable time on freshly plowed agricultural fields where they may potentially be exposed to anticholinesterase pesticides. Because of the population status and wintering ecology of plovers, the objectives of our study were to use nondestructive methods to report baseline plasma cholinesterase (ChE) levels in free-ranging mountain plovers wintering in California, USA, and to assess whether sampled birds showed signs of ChE inhibition related to anticholinesterase chemical exposure. We compared plasma ChE activity for mountain plovers sampled from the Carrizo Plain (an area relatively free of anticholinesterase pesticide use) with similar measures for plovers from the Central Valley (where anticholinesterase pesticides are widely used). Analyses for ChE inhibition indicated that none of the plovers had been recently exposed to these chemicals. However, mean ChE levels of plovers from the Central Valley were significantly higher (32%) than levels reported for plovers from the Carrizo Plain. This result differs from our original assumption of higher exposure risk to mountain plovers in the Central Valley but does suggest that some effect is occurring in the ChE activity of mountain plovers wintering in California. PMID:12503754

  17. Coccidioidomycosis among Workers Constructing Solar Power Farms, California, USA, 2011–2014

    PubMed Central

    Sondermeyer, Gail; Shusterman, Dennis; McNary, Jennifer; Vugia, Duc J.; McDowell, Ann; Borenstein, Penny; Gilliss, Debra; Ancock, Benedict; Prudhomme, Janice; Gold, Deborah; Windham, Gayle C.; Lee, Lauren; Materna, Barbara L.

    2015-01-01

    Coccidioidomycosis is associated with soil-disruptive work in Coccidioides-endemic areas of the southwestern United States. Among 3,572 workers constructing 2 solar power–generating facilities in San Luis Obispo County, California, USA, we identified 44 patients with symptom onset during October 2011–April 2014 (attack rate 1.2 cases/100 workers). Of these 44 patients, 20 resided in California outside San Luis Obispo County and 10 resided in another state; 9 were hospitalized (median 3 days), 34 missed work (median 22 days), and 2 had disseminated disease. Of the 25 patients who frequently performed soil-disruptive work, 6 reported frequent use of respiratory protection. As solar farm construction in Coccidioides-endemic areas increases, additional workers will probably be exposed and infected unless awareness is emphasized and effective exposure reduction measures implemented, including limiting dust generation and providing respiratory protection. Medical providers, including those in non–Coccidioides-endemic areas, should suspect coccidioidomycosis in workers with compatible illness and report cases to their local health department. PMID:26484688

  18. Community ecology and disease risk: lizards, squirrels, and the Lyme disease spirochete in California, USA.

    PubMed

    Salkeld, Daniel J; Lane, Robert S

    2010-01-01

    Vector-borne zoonotic diseases are often maintained in complex transmission cycles involving multiple vertebrate hosts and their arthropod vectors. In the state of California, U.S.A., the spirochete Borrelia burgdorferi, which causes Lyme disease, is transmitted between vertebrate hosts by the western black-legged tick, Ixodes pacificus. Several mammalian species serve as reservoir hosts of the spirochete, but levels of tick infestation, reservoir competence, and Borrelia-infection prevalence vary widely among such hosts. Here, we model the host (lizards, Peromyscus mice, Californian meadow voles, dusky-footed wood rats, and western gray squirrels), vector, and pathogen community of oak woodlands in northwestern California to determine the relative importance of different tick hosts. Observed infection prevalence of B. burgdorferi in host-seeking I. pacificus nymphs was 1.8-5.3%, and our host-community model estimated an infection prevalence of 1.6-2.2%. The western gray squirrel (Sciurus griseus) was the only source of infected nymphs. Lizards, which are refractory to Borrelia infection, are important in feeding subadult ticks but reduce disease risk (nymphal infection prevalence). Species identity is therefore critical in understanding and determining the local disease ecology. PMID:20380218

  19. 75 FR 60804 - Nimbus Hatchery Fish Passage Project, Lower American River, California

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-10-01

    ... Bureau of Reclamation Nimbus Hatchery Fish Passage Project, Lower American River, California AGENCY... Reclamation, the lead Federal agency, and the California Department of Fish and Game (CDFG), acting as the... Hatchery Fish Passage Project (Project). The purpose of the Project is to create and maintain a...

  20. Landscape-level Connectivity in Coastal Southern California, USA, as Assessed through Carnivore Habitat Suitability

    USGS Publications Warehouse

    Hunter, R.D.; Fisher, R.N.; Crooks, K.R.

    2003-01-01

    Although the fragmentation of the natural landscape of coastal southern California, USA, is accelerating, large-scale assessments of regional connectivity are lacking. Because of their large area requirements and long dispersal movements, mammalian carnivores can be effective focal species to use when evaluating landscape-level connectivity. Our goal was to make an initial assessment of the extent of landscape-level connectivity in coastal southern California using mountain lions (Felis concolor [Linnaeusl) and bobcats (Felis rufus [Shreber]) as focal species. We first characterized habitat preferences for mountain lions and bobcats from previously derived habitat relationship models for these species; the resulting maps provided a coarse view of habitat preferences for use at regional scales. We then constructed GIS models to evaluate the disturbance impact of roadways and development, major determinants of carnivore distribution and abundance in the south coast region. Finally, we combined the habitat relationship models with the disturbance impact models to characterize habitat connectivity for mountain lions and bobcats in the ecoregion. Habitat connectivity in the ecoregion appeared higher for bobcats than for mountain lions due in part to higher habitat suitability for bobcats in coastal lowland areas. Our models suggest that much of the key carnivore habitat in the coastal southern California is at risk; over 80% of high suitability habitat and over 90% of medium suitability habitat for carnivores is found in the least protected land management classes. Overall, these models allow for (1) identification of core habitat blocks for carnivores and key landscape connections between core areas, (2) evaluation of the level of protection of these areas, and (3) a regional framework within which to develop and coordinate local management and conservation plans.

  1. A multifaceted approach to prioritize and design bank stabilization measures along the Big Sioux River, South Dakota, USA

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A multifaceted approach was used to manage fine-grained sediment loadings from river bank erosion along the Big Sioux River between Dell Rapids and Sioux Falls, South Dakota, USA. Simulations with the RVR Meander and CONCEPTS river-morphodynamics computer models were conducted to identify stream-ban...

  2. 10Be distribution in soils from Merced River terraces, California

    USGS Publications Warehouse

    Pavich, M.J.; Brown, L.; Harden, J.; Klein, J.; Middleton, R.

    1986-01-01

    The distribution and residence time of cosmogenic 10Be in clay-rich soil horizons is fundamental to understanding and modelling the migration of 10Be on terrestrial sediments and in groundwater solutions. We have analyzed seven profiles of clay-rich soils developed from terrace sediments of the Merced River, California. The terraces and soils of increasing age are used to compare the 10Be inventory with a simple model of accumulation, decay and erosion. The data show that the distribution of 10Be varies with soil horizon clay content, that the residence time of 10Be in these horizons exceeds 105 years, and that to a rough approximation the inventory of 10Be in a thoroughly sampled soil profile fits the equation: N = (q - Em)(1 - e-????)/?? where q is delivery rate, E is erosion rate, m is the concentration of 10Be in the eroding surface layer, ?? is the decay constant, and t is the age of the depositional unit from which the soil has developed. The general applicability of this model is uncertain and warrants further testing in well-calibrated terrace sequences. ?? 1986.

  3. Predicting Eurasian watermilfoil's (Myriophylum spicatum L.) distribution and response to biological control in Fall River, California

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Eurasian watermilfoil (Myriophyllum spicatum L.), was first observed in Fall River, California in approximately 2001. Its presence has had impacts on the river. During 2009 and 2010 we determined Eurasian watermilfoil abundance and distribution. We also determined water temperature and total P conce...

  4. Dispersal forcing of a southern California river plumes, based on field and remote sensing observations

    USGS Publications Warehouse

    Warrick, Jonathan A.; Mertes, Leal A.K.; Washburn, Libe; Siegel, David A.

    2004-01-01

    River plumes are important pathways of terrestrial materials entering the sea. In southern California, rivers are known to be the dominant source of littoral, shelf and basin sediment and coastal pollution, although a basic understanding of the dynamics of these river inputs does not exist. Here we evaluate forcing parameters of a southern California river plume using ship-based hydrographic surveys and satellite remote sensing measurements to provide the first insights of river dispersal dynamics in southern California. Our results suggest that plumes of the Santa Clara River are strongly influenced by river inertia, producing jet-like structures ~10 km offshore during annual recurrence (~two-year) flood events and ~30 km during exceptional (~10-year recurrence) floods. Upwelling-favorable winds may be strong following stormwater events and can alter dispersal pathways of thse plumes. Due to similar runoff relationships and other reported satellite observations, we hypothesize that interia-dominated dispersal may be an important characteristic of the small, mountainous rivers throughout southern California.

  5. Prediction of River Flooding using Geospatial and Statistical Analysis in New York, USA and Kent, UK

    NASA Astrophysics Data System (ADS)

    Marsellos, A.; Tsakiri, K.; Smith, M.

    2014-12-01

    Flooding in the rivers normally occurs during periods of excessive precipitation (i.e. New York, USA; Kent, UK) or ice jams during the winter period (New York, USA). For the prediction and mapping of the river flooding, it is necessary to evaluate the spatial distribution of the water (volume) in the river as well as study the interaction between the climatic and hydrological variables. Two study areas have been analyzed; one in Mohawk River, New York and one in Kent, United Kingdom (UK). A high resolution Digital Elevation Model (DEM) of the Mohawk River, New York has been used for a GIS flooding simulation to determine the maximum elevation value of the water that cannot continue to be restricted in the trunk stream and as a result flooding in the river may be triggered. The Flooding Trigger Level (FTL) is determined by incremental volumetric and surface calculations from Triangulated Irregular Network (TIN) with the use of GIS software and LiDAR data. The prediction of flooding in the river can also be improved by the statistical analysis of the hydrological and climatic variables in Mohawk River and Kent, UK. A methodology of time series analysis has been applied for the decomposition of the hydrological (water flow and ground water data) and climatic data in both locations. The KZ (Kolmogorov-Zurbenko) filter is used for the decomposition of the time series into the long, seasonal, and short term components. The explanation of the long term component of the water flow using the climatic variables has been improved up to 90% for both locations. Similar analysis has been performed for the prediction of the seasonal and short term component. This methodology can be applied for flooding of the rivers in multiple sites.

  6. Regional Sediment Budget of the Columbia River Littoral Cell, USA

    USGS Publications Warehouse

    Buijsman, Maarten C.; Sherwood, C.R.; Gibbs, A.E.; Gelfenbaum, G.; Kaminsky, G.M.; Ruggiero, P.; Franklin, J.

    2002-01-01

    Summary -- In this Open-File Report we present calculations of changes in bathymetric and topographic volumes for the Grays Harbor, Willapa Bay, and Columbia River entrances and the adjacent coasts of North Beach, Grayland Plains, Long Beach, and Clatsop Plains for four intervals: pre-jetty - 1920s (Interval 1), 1920s - 1950s (Interval 2), 1950s - 1990s (Interval 3), and 1920s 1990s (Interval 4). This analysis is part of the Southwest Washington Coastal Erosion Study (SWCES), the goals of which are to understand and predict the morphologic behavior of the Columbia River littoral cell on a management scale of tens of kilometers and decades. We obtain topographic Light Detection and Ranging (LIDAR) data from a joint project by the U.S. Geological Survey (USGS), National Oceanic and Atmospheric Administration (NOAA), National Aeronautic and Space Administration (NASA), and the Washington State Department of Ecology (DOE) and bathymetric data from the U.S. Coast and Geodetic Survey (USC&GS), U.S. Army Corps of Engineers (USACE), USGS, and the DOE. Shoreline data are digitized from T-Sheets and aerial photographs from the USC&GS and National Ocean Service (NOS). Instead of uncritically adjusting each survey to NAVD88, a common vertical land-based datum, we adjust some surveys to produce optimal results according to the following criteria. First, we minimize offsets in overlapping surveys within the same era, and second, we minimize bathymetric changes (relative to the 1990s) in deep water, where we assume minimal change has taken place. We grid bathymetric and topographic datasets using kriging and triangulation algorithms, calculate bathymetric-change surfaces for each interval, and calculate volume changes within polygons that are overlaid on the bathymetric-change surfaces. We find similar morphologic changes near the entrances to Grays Harbor and the Columbia River following jetty construction between 1898 and 1916 at the Grays Harbor entrance and between 1885 and

  7. Extensive geographic and ontogenetic variation characterizes the trophic ecology of a temperate reef fish on southern California (USA) rocky reefs

    PubMed Central

    Hamilton, Scott L.; Caselle, Jennifer E.; Lantz, Coulson A.; Egloff, Tiana L.; Kondo, Emi; Newsome, Seth D.; Loke-Smith, Kerri; Pondella, Daniel J.; Young, Kelly A.; Lowe, Christopher G.

    2015-01-01

    Interactions between predator and prey act to shape the structure of ecological communities, and these interactions can differ across space. California sheephead Semicossyphus pulcher are common predators of benthic invertebrates in kelp beds and rocky reefs in southern California, USA. Through gut content and stable isotope (δ13C and †15N) analyses, we investigated geographic and ontogenetic variation in trophic ecology across 9 populations located at island and mainland sites throughout southern California. We found extensive geographic variation in California sheephead diet composition over small spatial scales. Populations differed in the proportion of sessile filter/suspension feeders or mobile invertebrates in the diet. Spatial variation in diet was highly correlated with other life history and demographic traits (e.g. growth, survivorship, reproductive condition, and energy storage), in addition to proxies of prey availability from community surveys. Multivariate descriptions of the diet from gut contents roughly agreed with the spatial groupings of sites based on stable isotope analysis of both California sheephead and their prey. Ontogenetic changes in diet occurred consistently across populations, despite spatial differences in size structure. As California sheephead increase in size, diets shift from small filter feeders, like bivalves, to larger mobile invertebrates, such as sea urchins. Our results indicate that locations with large California sheephead present, such as many marine reserves, may experience increased predation pressure on sea urchins, which could ultimately affect kelp persistence. PMID:26246648

  8. Mercury correlations among six tissues for four waterbird species breeding in San Francisco Bay, California, USA

    USGS Publications Warehouse

    Eagles-Smith, C. A.; Ackerman, J.T.; Adelsbach, T.L.; Takekawa, J.Y.; Miles, A.K.; Keister, R.A.

    2008-01-01

    Despite a large body of research concerning mercury (Hg) in birds, no single tissue has been used consistently to assess Hg exposure, and this has hampered comparisons across studies. We evaluated the relationships of Hg concentrations among tissues in four species of waterbirds (American avocets [Recurvirostra americana], black-necked stilts [Himantopus mexicanus], Caspian terns [Hydroprogne caspia; formerly Sterna caspia], and Forster's terns [Sterna forsteri]) and across three life stages (prebreeding adults, breeding adults, and chicks) in San Francisco Bay, California, USA. Across species and life stages, Hg concentrations (least square mean ?? standard error) were highest in head feathers (6.45 ?? 0.31 ??g/g dry wt) and breast feathers (5.76 ?? 0.28 ??g/g dry wt), followed by kidney (4.54 ?? 0.22 ??g/g dry wt), liver (4.43 ?? 0.21 ??g/g dry wt), blood (3.10 ?? 0.15 ??g/g dry wt), and muscle (1.67 ?? 0.08 ??g/g dry wt). Relative Hg distribution among tissues, however, differed by species and life stage. Mercury concentrations were highly correlated among internal tissues (r 2 ??? 0.89). Conversely, the relationships between Hg in feathers and internal tissues were substantially weaker (r2 ??? 0.42). Regression slopes sometimes differed among species and life stages, indicating that care must be used when predicting Hg concentrations in one tissue based on those in another. However, we found good agreement between predictions made using a general tissue-prediction equation and more specific equations developed for each species and life stage. Finally, our results suggest that blood is an excellent, nonlethal predictor of Hg concentrations in internal tissues but that feathers are relatively poor indicators of Hg concentrations in internal tissues. ?? 2008 SETAC Printed in the USA.

  9. A regional mass balance of methylmercury in San Francisco Bay, California, USA.

    PubMed

    Yee, Donald; McKee, Lester J; Oram, John J

    2011-01-01

    The San Francisco Bay (California, USA) is a water body listed as impaired because of Hg contamination in sport fish for human consumption, as well as possible effects on resident wildlife. A legacy of Hg mining in local watersheds and Hg used in Au mining in the Sierra Nevada (USA) has contributed to contamination seen in the bay, with additional more recent and ongoing inputs from various sources. Methylmercury is the species of Hg most directly responsible for contamination in biota, so better understanding of its sources, loads, and processes was sought to identify the best means to reduce impacts. A regional scale model of San Francisco Bay was developed to characterize major methylmercury inputs and processes. The model was used to evaluate the potential impact of uncertainties in estimates for methylmercury loading pathways and environmental processes, identify major data gaps, and explore management prospects for reducing methylmercury contamination. External loading pathways considered in the mass balance include methylmercury loads entering via atmospheric deposition to the bay surface, and discharges from the Sacramento/San Joaquin Delta, local watersheds, municipal wastewater, and fringing wetlands. Internal processes considered include exchange between bed and suspended sediments and the water column, in situ production and demethylation, biological uptake, and losses via hydrologic transport to the ocean through the Golden Gate. In situ sediment methylation and demethylation were dominant sources and losses determining ambient steady-state concentrations in the model, with changes in external loads and export causing smaller changes. Better information on methylation and demethylation is thus most critical to improving understanding of methylmercury balances and management. PMID:20872899

  10. Groundwater flood of a river terrace in southwest Wisconsin, USA

    NASA Astrophysics Data System (ADS)

    Gotkowitz, Madeline B.; Attig, John W.; McDermott, Thomas

    2014-09-01

    Intense rainstorms in 2008 resulted in wide-spread flooding across the Midwestern United States. In Wisconsin, floodwater inundated a 17.7-km2 area on an outwash terrace, 7.5 m above the mapped floodplain of the Wisconsin River. Surface-water runoff initiated the flooding, but results of field investigation and modeling indicate that rapid water-table rise and groundwater inundation caused the long-lasting flood far from the riparian floodplain. Local geologic and geomorphic features of the landscape lead to spatial variability in runoff and recharge to the unconfined sand and gravel aquifer, and regional hydrogeologic conditions increased groundwater discharge from the deep bedrock aquifer to the river valley. Although reports of extreme cases of groundwater flooding are uncommon, this occurrence had significant economic and social costs. Local, state and federal officials required hydrologic analysis to support emergency management and long-term flood mitigation strategies. Rapid, sustained water-table rise and the resultant flooding of this high-permeability aquifer illustrate a significant aspect of groundwater system response to an extreme precipitation event. Comprehensive land-use planning should encompass the potential for water-table rise and groundwater flooding in a variety of hydrogeologic settings, as future changes in climate may impact recharge and the water-table elevation.

  11. Accumulation of current-use and organochlorine pesticides in crab embryos from Northern California, USA

    USGS Publications Warehouse

    Smalling, Kelly L.; Morgan, Steven; Kuivila, Kathryn K.

    2010-01-01

    Invertebrates have long been used as resident sentinels for assessing ecosystem health and productivity. The shore crabs, Hemigrapsus oregonensis and Pachygrapsus crassipes, are abundant in estuaries and beaches throughout northern California, USA and have been used as indicators of habitat conditions in several salt marshes. The overall objectives of the present study were to conduct a lab-based study to test the accumulation of current-use pesticides, validate the analytical method and to analyze field-collected crabs for a suite of 74 current-use and legacy pesticides. A simple laboratory uptake study was designed to determine if embryos could bioconcentrate the herbicide molinate over a 7-d period. At the end of the experiment, embryos were removed from the crabs and analyzed by gas chromatography/mass spectrometry. Although relatively hydrophilic (log KOW of 2.9), molinate did accumulate with an estimated bioconcentration factor (log BCF) of approximately 2.5. Following method validation, embryos were collected from two different Northern California salt marshes and analyzed. In field-collected embryos 18 current-use and eight organochlorine pesticides were detected including synthetic pyrethroids and organophosphate insecticides, as well as DDT and its degradates. Lipid-normalized concentrations of the pesticides detected in the field-collected crab embryos ranged from 0.1 to 4 ppm. Pesticide concentrations and profiles in crab embryos were site specific and could be correlated to differences in land-use practices. These preliminary results indicate that embryos are an effective sink for organic contaminants in the environment and have the potential to be good indicators of ecosystem health, especially when contaminant body burden analyses are paired with reproductive impairment assays.

  12. Bat Response to Differing Fire Severity in Mixed-Conifer Forest California, USA

    PubMed Central

    Heady, Paul A.; Hayes, John P.; Frick, Winifred F.

    2013-01-01

    Wildlife response to natural disturbances such as fire is of conservation concern to managers, policy makers, and scientists, yet information is scant beyond a few well-studied groups (e.g., birds, small mammals). We examined the effects of wildfire severity on bats, a taxon of high conservation concern, at both the stand (<1 ha) and landscape scale in response to the 2002 McNally fire in the Sierra Nevada region of California, USA. One year after fire, we conducted surveys of echolocation activity at 14 survey locations, stratified in riparian and upland habitat, in mixed-conifer forest habitats spanning three levels of burn severity: unburned, moderate, and high. Bat activity in burned areas was either equivalent or higher than in unburned stands for all six phonic groups measured, with four groups having significantly greater activity in at least one burn severity level. Evidence of differentiation between fire severities was observed with some Myotis species having higher levels of activity in stands of high-severity burn. Larger-bodied bats, typically adapted to more open habitat, showed no response to fire. We found differential use of riparian and upland habitats among the phonic groups, yet no interaction of habitat type by fire severity was found. Extent of high-severity fire damage in the landscape had no effect on activity of bats in unburned sites suggesting no landscape effect of fire on foraging site selection and emphasizing stand-scale conditions driving bat activity. Results from this fire in mixed-conifer forests of California suggest that bats are resilient to landscape-scale fire and that some species are preferentially selecting burned areas for foraging, perhaps facilitated by reduced clutter and increased post-fire availability of prey and roosts. PMID:23483936

  13. Urban sources and emissions of nitrous oxide and methane in southern California, USA

    NASA Astrophysics Data System (ADS)

    Townsend-Small, A.; Pataki, D.; Tyler, S. C.; Czimczik, C. I.; Xu, X.; Christensen, L. E.

    2012-12-01

    Anthropogenic activities have resulted in increasing levels of greenhouse gases, including carbon dioxide, methane, and nitrous oxide. While global and regional emissions sources of carbon dioxide are relatively well understood, methane and nitrous oxide are less constrained, particularly at regional scales. Here we present the results of an investigation of sources and emissions of methane and nitrous oxide in Los Angeles, California, USA, one of Earth's largest urban areas. The original goal of the project was to determine whether isotopes are useful tracers of agricultural versus urban nitrous oxide and methane sources. For methane, we found that stable isotopes (carbon-13 and deuterium) and radiocarbon are good tracers of biogenic versus fossil fuel sources. High altitude observations of methane concentration, measured continuously using tunable laser spectroscopy, and isotope ratios, measured on discrete flask samples using mass spectrometry, indicate that the predominant methane source in Los Angeles is from fossil fuels, likely from "fugitive" emissions from geologic formations, natural gas pipelines, oil refining, or power plants. We also measured nitrous oxide emissions and isotope ratios from urban (landscaping and wastewater treatment) and agricultural sources (corn and vegetable fields). There was no difference in nitrous oxide isotope ratios between the different types of sources, although stable isotopes did differ between nitrous oxide produced in oxic and anoxic wastewater treatment tanks. Our nitrous oxide flux data indicate that landscaped turfgrass emits nitrous oxide at rates equivalent to agricultural systems, indicating that ornamental soils should not be disregarded in regional nitrous oxide budgets. However, we also showed that wastewater treatment is a much greater source of nitrous oxide than soils regionally. This work shows that global nitrous oxide and methane budgets are not easily downscaled to regional, urban settings, which has

  14. Hydrochemical evidence for mixing of river water and groundwater during high-flow conditions, lower Suwannee River basin, Florida, USA

    USGS Publications Warehouse

    Crandall, C.A.; Katz, B.G.; Hirten, J.J.

    1999-01-01

    Karstic aquifers are highly susceptible to rapid infiltration of river water, particularly during periods of high flow. Following a period of sustained rainfall in the Suwannee River basin, Florida, USA, the stage of the Suwannee River rose from 3.0 to 5.88 m above mean sea level in April 1996 and discharge peaked at 360 m3/s. During these high-flow conditions, water from the Suwannee River migrated directly into the karstic Upper Floridan aquifer, the main source of water supply for the area. Changes in the chemical composition of groundwater were quantified using naturally occurring geochemical tracers and mass-balance modeling techniques. Mixing of river water with groundwater was indicated by a decrease in the concentrations of calcium, silica, and 222Rn; and by an increase in dissolved organic carbon (DOC), tannic acid, and chloride, compared to low-flow conditions in water from a nearby monitoring well, Wingate Sink, and Little River Springs. The proportion (fraction) of river water in groundwater ranged from 0.13 to 0.65 at Wingate Sink and from 0.5 to 0.99 at well W-17258, based on binary mixing models using various tracers. The effectiveness of a natural tracer in quantifying mixing of river water and groundwater was related to differences in tracer concentration of the two end members and how conservatively the tracer reacted in the mixed water. Solutes with similar concentrations in the two end-member waters (Na, Mg, K, Cl, SO4, SiO2) were not as effective tracers for quantifying mixing of river water and groundwater as those with larger differences in end-member concentrations (Ca, tannic acid, DOC, 222Rn, HCO3). ?? Springer-Verlag.

  15. Identifying and Characterizing Atmospheric Rivers Impacting Southern California

    NASA Astrophysics Data System (ADS)

    Harris, S. M.; Carvalho, L. V.

    2015-12-01

    Atmospheric rivers (ARs) are channels of high water vapor flux within the low atmosphere that transport moisture towards midlatitudes on synoptic timescales. For areas with coastal mountainous terrain such as North America's west coast, ARs often produce high intensity precipitation due to orographic forcing. Regional AR studies focus on the Pacific Northwest as this is where ARs landfall most frequently. For Southern California (SCA) there are relatively few AR landfalls per year, however, ARs that do landfall in SCA provide a majority of the area's annual total precipitation as well as some of the region's highest intensity rainfall. As SCA is prone to both drought as well as precipitation-induced hazards, and because the area is dependent on relatively few precipitation events to provide the bulk of annual rainfall totals, any changes to storm frequency or intensity may dramatically impact the region. It imperative to understand the characteristics and mechanisms behind high-impact ARs events that landfall in SCA in order to properly forecast and prepare for future occurrences, particularly as these events are important for water management and hazard mitigation. We develop an algorithm that uses daily total precipitable water fields from reanalysis to identify AR activity impacting North America's western coast from 1979 to 2013 and categorizes identified AR events according to landfall region. Additional reanalysis fields are used to create composites of atmospheric variables prior to, on the day of, and after AR landfall in order to determine and differentiate the defining characteristics for ARs impacting these varying regions. This allows us to characterize the atmospheric makeup behind ARs impacting SCA, including possible indications as to the mechanisms behind their initiation as well as trajectory.

  16. Large-scale dam removal on the Elwha River, Washington, USA: Coastal geomorphic change

    NASA Astrophysics Data System (ADS)

    Gelfenbaum, Guy; Stevens, Andrew W.; Miller, Ian; Warrick, Jonathan A.; Ogston, Andrea S.; Eidam, Emily

    2015-10-01

    Two dams on the Elwha River, Washington State, USA trapped over 20 million m3 of mud, sand, and gravel since 1927, reducing downstream sediment fluxes and contributing to erosion of the river's coastal delta. The removal of the Elwha and Glines Canyon dams, initiated in September 2011, induced massive increases in river sediment supply and provided an unprecedented opportunity to examine the geomorphic response of a coastal delta to these increases. Detailed measurements of beach topography and nearshore bathymetry show that ~ 2.5 million m3 of sediment was deposited during the first two years of dam removal, which is ~ 100 times greater than deposition rates measured prior to dam removal. The majority of the deposit was located in the intertidal and shallow subtidal region immediately offshore of the river mouth and was composed of sand and gravel. Additional areas of deposition include a secondary sandy deposit to the east of the river mouth and a muddy deposit west of the mouth. A comparison with fluvial sediment fluxes suggests that ~ 70% of the sand and gravel and ~ 6% of the mud supplied by the river was found in the survey area (within about 2 km of the mouth). A hydrodynamic and sediment transport model, validated with in-situ measurements, shows that tidal currents interacting with the larger relict submarine delta help disperse fine sediment large distances east and west of the river mouth. The model also suggests that waves and currents erode the primary deposit located near the river mouth and transport sandy sediment eastward to form the secondary deposit. Though most of the substrate of the larger relict submarine delta was unchanged during the first two years of dam removal, portions of the seafloor close to the river mouth became finer, modifying habitats for biological communities. These results show that river restoration, like natural changes in river sediment supply, can result in rapid and substantial coastal geomorphological responses.

  17. Groundwater movement, recharge, and perchlorate occurrence in a faulted alluvial aquifer in California (USA)

    USGS Publications Warehouse

    Izbicki, John A.; Teague, Nicholas F.; Hatzinger, Paul B.; Bohlke, John Karl; Sturchio, Neil C.

    2015-01-01

    Perchlorate from military, industrial, and legacy agricultural sources is present within an alluvial aquifer in the Rialto-Colton groundwater subbasin, 80 km east of Los Angeles, California (USA). The area is extensively faulted, with water-level differences exceeding 60 m across parts of the Rialto-Colton Fault separating the Rialto-Colton and Chino groundwater subbasins. Coupled well-bore flow and depth-dependent water-quality data show decreases in well yield and changes in water chemistry and isotopic composition, reflecting changing aquifer properties and groundwater recharge sources with depth. Perchlorate movement through some wells under unpumped conditions from shallower to deeper layers underlying mapped plumes was as high as 13 kg/year. Water-level maps suggest potential groundwater movement across the Rialto-Colton Fault through an overlying perched aquifer. Upward flow through a well in the Chino subbasin near the Rialto-Colton Fault suggests potential groundwater movement across the fault through permeable layers within partly consolidated deposits at depth. Although potentially important locally, movement of groundwater from the Rialto-Colton subbasin has not resulted in widespread occurrence of perchlorate within the Chino subbasin. Nitrate and perchlorate concentrations at the water table, associated with legacy agricultural fertilizer use, may be underestimated by data from long-screened wells that mix water from different depths within the aquifer.

  18. Holocene forest development and maintenance on different substrates in the Klamath Mountains, northern California, USA.

    PubMed

    Briles, Christy E; Whitlock, Cathy; Skinner, Carl N; Mohr, Jerry

    2011-03-01

    The influence of substrate on long-term vegetation dynamics has received little attention, and yet nutrient-limited ecosystems have some of the highest levels of endemism in the world. The diverse geology of the Klamath Mountains of northern California (USA) allows examination of the long-term influence of edaphic constraints in subalpine forests through a comparison of vegetation histories between nutrient-limited ultramafic substrates and terrain that is more fertile. Pollen and charcoal records spanning up to 15000 years from ultramafic settings reveal a distinctly different vegetation history compared to other soil types. In non-ultramafic settings, the dominant trees and shrubs shifted in elevation in response to Holocene climate variations resulting in compositional and structural changes, whereas on ultramafic substrates changes were primarily structural, not compositional. Fire activity was similar through most of the Holocene with the exception of declines over the last 4000 years on ultramafic substrates, likely due to the reduction of understory fuels and cooler wetter conditions than in the middle Holocene. These results suggest that the tree and shrub distributions were more responsive to past climate changes on non-ultramafic substrates compared to those on ultramafic substrates. The combination of these dynamics may help explain high levels of plant diversity in the Klamath Mountains and provide insights for managing these complex ecosystems. PMID:21608468

  19. Feline infectious peritonitis in a mountain lion (Puma concolor), California, USA.

    PubMed

    Stephenson, Nicole; Swift, Pamela; Moeller, Robert B; Worth, S Joy; Foley, Janet

    2013-04-01

    Feline infectious peritonitis (FIP) is a fatal immune-mediated vasculitis of felids caused by a mutant form of a common feline enteric virus, feline enteric coronavirus. The virus can attack many organ systems and causes a broad range of signs, commonly including weight loss and fever. Regardless of presentation, FIP is ultimately fatal and often presents a diagnostic challenge. In May 2010, a malnourished young adult male mountain lion (Puma concolor) from Kern County, California, USA was euthanized because of concern for public safety, and a postmortem examination was performed. Gross necropsy and histopathologic examination revealed necrotizing, multifocal myocarditis; necrotizing, neutrophilic, and histiocytic myositis and vasculitis of the tunica muscularis layer of the small and large intestines; and embolic, multifocal, interstitial pneumonia. Feline coronavirus antigen was detected in both the heart and intestinal tissue by immunohistochemistry. A PCR for coronavirus performed on kidney tissue was positive, confirming a diagnosis of FIP. Although coronavirus infection has been documented in mountain lions by serology, this is the first confirmed report of FIP. PMID:23568918

  20. Chemical preservation of insect cuticle from the Pleistocene asphalt deposits of California, USA

    NASA Astrophysics Data System (ADS)

    Stankiewicz, B. Artur; Briggs, Derek E. G.; Evershed, Richard P.; Duncan, Ian J.

    1997-06-01

    Cuticles of Coleoptera (beetles) and Orthoptera (crickets) from the Pleistocene asphalt deposits of Rancho La Brea and McKittrick in California, USA were studied by means of flash pyrolysis-gas chromatography /mass spectrometry (py-GC/MS). Commercial chitin, amino acid standards, and fresh and decayed cuticles of modern beetle and cricket were likewise investigated to allow the state of preservation of the fossil specimens to be interpreted. Insect cuticles are composed of chitin and proteins covalently cross-linked via catecholamine moieties. Pyrolysis of the fossil insects yielded all the products normally obtained from the pyrolysis of the chitin biopolymer, indicating that it has survived in a highly intact state. Proteins, on the other hand, are poorly preserved. Only phenols, indoles, and nitrobenzenes were present among the pyrolysis products, providing evidence for the preservation of tyrosine, tryptophan, and phenylalanine moieties. This demonstrates the preferential preservation of chitin in comparison with proteins, a result confirmed by scanning electron microscopy of the structure.

  1. Risk Factors for Human Lice and Bartonellosis among the Homeless, San Francisco, California, USA

    PubMed Central

    Cole-Porse, Charsey; Kjemtrup, Anne; Osikowicz, Lynn; Kosoy, Michael

    2014-01-01

    Homeless persons in San Francisco, California, USA, have been shown to have head and body lice infestations and Bartonella quintana infections. We surveyed a self-selected population of homeless persons in San Francisco to assess infestations of head and body lice, risks of having body lice, and presence of B. quintana in lice. A total of 203 persons who reported itching were surveyed during 2008–2010 and 2012: 60 (30%) had body lice, 10 (4.9%) had head lice, and 6 (3.0%) had both. B. quintana was detected in 10 (15.9%) of 63 body lice pools and in 6 (37.5%) of 16 head lice pools. Variables significantly associated (p<0.05) with having body lice in this homeless population included male sex, African–American ethnicity, and sleeping outdoors. Our study findings suggest that specific segments of the homeless population would benefit from information on preventing body lice infestations and louseborne diseases. PMID:25280380

  2. Alicyclobacillus vulcanalis sp. nov., a thermophilic, acidophilic bacterium isolated from Coso Hot Springs, California, USA.

    PubMed

    Simbahan, Jessica; Drijber, Rhae; Blum, Paul

    2004-09-01

    A thermo-acidophilic Gram-positive bacterium, strain CsHg2T, which grows aerobically at 35-65 degrees C (optimum 55 degrees C) and at pH 2.0-6.0 (optimum 4.0), was isolated from a geothermal pool located in Coso Hot Springs in the Mojave Desert, California, USA. Phylogenetic analysis of 16S rRNA gene sequences showed that this bacterium was most closely related to the type strains of Alicyclobacillus acidocaldarius (97.8 % identity) and Alicyclobacillus sendaiensis (96.9 %), three Japanese strains denoted as UZ-1, KHA-31 and MIH 332 (96.1-96.5 %) and Alicyclobacillus genomic species FR-6 (96.3 %). Phenotypic characteristics including temperature and pH optima, G+C composition, acid production from a variety of carbon sources and sensitivity to different metal salts distinguished CsHg2T from A. acidocaldarius, A. sendaiensis and FR-6. The cell lipid membrane was composed mainly of omega-cyclohexyl fatty acid, consistent with membranes from other Alicyclobacillus species. Very low DNA-DNA hybridization values between CsHg2T and the type strains of Alicyclobacillus indicate that CsHg2T represents a distinct species. On the basis of these results, the name Alicyclobacillus vulcanalis sp. nov. is proposed for this organism. The type strain is CsHg2T (ATCC BAA-915T = DSM 16176T). PMID:15388732

  3. Temporal and spatial patterns of phytoplankton production in Tomales Bay, California, U.S.A.

    USGS Publications Warehouse

    Cole, B.E.

    1989-01-01

    Primary productivity in the water column was measured 14 times between April 1985 and April 1986 at three sites in Tomales Bay, California, USA The conditions at these three stations encompassed the range of hydrographic conditions, phytoplankton biomass, phytoplankton community composition, and turbidity typical of this coastal embayment. Linear regression of the measured daily carbon uptake against the composite parameter B Zp Io (where B is the average phytoplankton biomass in the photic zone; Zp is the photic depth; and Io is the daily surface insolation) indicates that 90% of the variability in primary productivity is explained by variations in phytoplankton biomass and light availability. The linear function derived using Tomales Bay data is essentially the same as that which explains more than 80% of the variation in productivity in four other estuarine systems. Using the linear function and measured values for B, Zp, and Io, the daily photic-zone productivity was estimated for 10 sites at monthly intervals over the annual period. The average daily photic-zone productivity for the 10 sites ranged from 0??2 to 2??2 g C m-2. The bay-wide average annual primary productivity in the water column was 400 g C m-2, with most of the uptake occuring in spring and early summer. Spatial and temporal variations in primary productivity were similar to variations in phytoplankton biomass. Productivity was highest in the seaward and central regions of the bay and lowest in the shallow landward region. ?? 1989.

  4. Mercury levels, reproduction, and hematology in western grebes from three California Lakes, USA

    SciTech Connect

    Elbert, R.A.; Anderson, D.W.

    1998-02-01

    Twenty-three healthy adult western and Clark`s grebes (Aechmorphorus occidentalis and Aechmorphorus clarkii) were collected at three study sites in California, USA, in 1992: Clear Lake, Lake County; Eagle Lake, Lassen County; and Tule Lake, Siskiyou County. Liver, kidney, breast muscle, and brain were analyzed for total mercury (Hg) concentration (ppm wet weight), and blood was analyzed for various blood parameters. Clear Lake birds had greater Hg concentrations in kidney, breast muscle, and brain than birds from the other two lakes whereas liver concentrations were not statistically different. Average concentrations for Clear Lake birds were 2.74 ppm for liver, 2.06 ppm for kidney, 1.06 ppm for breast muscle, and 0.28 ppm for brain. The tissue levels of kidney, breast muscle, and brain at the other two study sites were one half the levels found at Clear Lake. These mean tissue levels were near, but below, those known to cause adverse effects. When data from all sites were merged, kidney, breast muscle, and brain concentrations are positively correlated to each other. Liver concentrations were not correlated to any other value. Brain Hg concentrations were also negatively correlated to blood potassium and blood phosphorus levels. Kidney Hg levels were positively correlated to percent blood heterophils and negatively correlated to percent eosinophils, suggesting that mercury levels might be affecting immune function. These biomarkers could not be related to any obvious ecological effects.

  5. Groundwater movement, recharge, and perchlorate occurrence in a faulted alluvial aquifer in California (USA)

    NASA Astrophysics Data System (ADS)

    Izbicki, John A.; Teague, Nicholas F.; Hatzinger, Paul B.; Böhlke, J. K.; Sturchio, Neil C.

    2015-05-01

    Perchlorate from military, industrial, and legacy agricultural sources is present within an alluvial aquifer in the Rialto-Colton groundwater subbasin, 80 km east of Los Angeles, California (USA). The area is extensively faulted, with water-level differences exceeding 60 m across parts of the Rialto-Colton Fault separating the Rialto-Colton and Chino groundwater subbasins. Coupled well-bore flow and depth-dependent water-quality data show decreases in well yield and changes in water chemistry and isotopic composition, reflecting changing aquifer properties and groundwater recharge sources with depth. Perchlorate movement through some wells under unpumped conditions from shallower to deeper layers underlying mapped plumes was as high as 13 kg/year. Water-level maps suggest potential groundwater movement across the Rialto-Colton Fault through an overlying perched aquifer. Upward flow through a well in the Chino subbasin near the Rialto-Colton Fault suggests potential groundwater movement across the fault through permeable layers within partly consolidated deposits at depth. Although potentially important locally, movement of groundwater from the Rialto-Colton subbasin has not resulted in widespread occurrence of perchlorate within the Chino subbasin. Nitrate and perchlorate concentrations at the water table, associated with legacy agricultural fertilizer use, may be underestimated by data from long-screened wells that mix water from different depths within the aquifer.

  6. Dissolved and Particulate Amino Acids in the Lower Mississippi and Pearl Rivers (USA)

    NASA Astrophysics Data System (ADS)

    Duan, S.; Bianchi, T. S.

    2006-12-01

    Seasonal changes (monthly samples) in abundance and composition of dissolved and particulate amino acids were observed at one station in the lower Mississippi and Pearl Rivers (MS, USA) from September 2001 to August 2003. Spatial variability was also observed during a 4 day transmit from river-mile 225 to river mouth (Head of Passes, LA) in the Mississippi River, and a two-day downstream sampling from Jackson (MS) to Stennis Space Center (MS). Temporal data in the lower Mississippi River showed significantly lower concentrations of dissolved combined amino acids (DCAA, 0.45-1.4 μ M) and dissolved amino acids in high molecular weight fraction (HMW DAA, 0.13-0.27 μ M) than in the Pearl River (DCAA, 0.91-2.8 μ M; HMW DAA, 0.25-0.95 μ M). DCAA and HMW DAA in both rivers were generally higher during high-flow periods. DFAA was significantly lower than DCAA in both rivers (0.05-0.08 μ M), and displayed minimal seasonal variability. Total particulate amino acids (PAA) in both rivers were in the same range (0.7-1.4 μ M). A C- normalized yield of PAA (PAA-C/POC) was negatively correlated with suspended particulate matter and positively with chl-a in both rivers. No significant difference in PAA composition was observed in the two rivers. However, PAA in both rivers was relatively enriched in arginine, alanine, methionine and leucine, and depleted in aspartic acid, serine, and non-protein amino acids, compared to DCAA. While DCAA spatial variability in the lower Mississippi River was minimal, decreases in PAA (from 1.06 to 0.43 μ M) were consistent with particulate organic carbon (POC) and particulate nitrogen (PN). Frequent variations in the PAA-C/POC ratio were inversely correlated with suspended particulate matter and PAA (R = -0.7, n = 48), suggesting short- scale sedimentation and resuspension events. A gradual increase in % non-protein AA along with a loss of phytoplankton biomass along the river, suggested was indicative of bacterial utilization of labile

  7. [Experiences of undocumented Mexican migrant women when accessing sexual and reproductive health services in California, USA: a case study].

    PubMed

    Deeb-Sossa, Natalia; Díaz Olavarrieta, Claudia; Juárez-Ramírez, Clara; García, Sandra G; Villalobos, Aremis

    2013-05-01

    This study focuses on the experience of Mexican women migrants in California, USA, with the use of formal health services for sexual and reproductive health issues. The authors used a qualitative interpretative approach with life histories, interviewing eight female users of healthcare services in California and seven key informants in Mexico and California. There were three main types of barriers to healthcare: immigration status, language, and gender. Participants reported long waiting times, discriminatory attitudes, and high cost of services. A combination of formal and informal healthcare services was common. The assessment of quality of care was closely related to undocumented immigration status. Social support networks are crucial to help solve healthcare issues. Quality of care should take intercultural health issues into account. PMID:23703003

  8. Reprint of: Large-scale dam removal on the Elwha River, Washington, USA: River channel and floodplain geomorphic change

    NASA Astrophysics Data System (ADS)

    East, Amy E.; Pess, George R.; Bountry, Jennifer A.; Magirl, Christopher S.; Ritchie, Andrew C.; Logan, Joshua B.; Randle, Timothy J.; Mastin, Mark C.; Minear, Justin T.; Duda, Jeffrey J.; Liermann, Martin C.; McHenry, Michael L.; Beechie, Timothy J.; Shafroth, Patrick B.

    2015-10-01

    A substantial increase in fluvial sediment supply relative to transport capacity causes complex, large-magnitude changes in river and floodplain morphology downstream. Although sedimentary and geomorphic responses to sediment pulses are a fundamental part of landscape evolution, few opportunities exist to quantify those processes over field scales. We investigated the downstream effects of sediment released during the largest dam removal in history, on the Elwha River, Washington, USA, by measuring changes in riverbed elevation and topography, bed sediment grain size, and channel planform as two dams were removed in stages over two years. As 10.5 million t (7.1 million m3) of sediment was released from two former reservoirs, downstream dispersion of a sediment wave caused widespread bed aggradation of ~ 1 m (greater where pools filled), changed the river from pool-riffle to braided morphology, and decreased the slope of the lowermost river. The newly deposited sediment, which was finer than most of the pre-dam-removal bed, formed new bars (largely pebble, granule, and sand material), prompting aggradational channel avulsion that increased the channel braiding index by almost 50%. As a result of mainstem bed aggradation, floodplain channels received flow and accumulated new sediment even during low to moderate flow conditions. The river system showed a two- to tenfold greater geomorphic response to dam removal (in terms of bed elevation change magnitude) than it had to a 40-year flood event four years before dam removal. Two years after dam removal began, as the river had started to incise through deposits of the initial sediment wave, ~ 1.2 million t of new sediment (~ 10% of the amount released from the two reservoirs) was stored along 18 river km of the mainstem channel and 25 km of floodplain channels. The Elwha River thus was able to transport most of the released sediment to the river mouth. The geomorphic alterations and changing bed sediment grain size along

  9. Turbidity and suspended-sediment transport in the Russian River Basin, California

    USGS Publications Warehouse

    Ritter, John R.; Brown, William M., III

    1971-01-01

    The Russian River in north coastal California has a persistent turbidness, which has reportedly caused a decline in the success of the sports fishermen. As a consequence, the number of sports fishermen angling in the river has declined, and industries dependent on their business have suffered. To determine the source of the turbidity and the rate of sediment transport in the basin, a network of sampling station was established in February 1964 along the river, on some of its tributaries, and near Lake Pillsbury in the upper Eel River basin.

  10. Atmospheric River Development and Effects on Southern California

    NASA Astrophysics Data System (ADS)

    Harris, S. M.; Carvalho, L. V.

    2014-12-01

    Throughout most of southern California (SCA) annual precipitation totals occur from relatively few storms per season. Any changes to storm frequency or intensity may dramatically impact the region, as its landscapes are prone to various rainfall-induced hazards including landslides and floods. These hazards become more frequent following drought or fire events, conditions also reliant on precipitation and common in SCA. Rainfall forecasts are especially difficult to determine as regional precipitation is affected by numerous phenomena. On synoptic timescales, atmospheric rivers (ARs) are one such phenomenon known to impact SCA rainfall. ARs are channels of high water vapor content found within the lower atmosphere that transport moisture towards midlatitudes. In areas with varying topography, ARs often produce high-intensity precipitation due to orographic forcing. Although much insight has been gained in understanding AR climatology affecting North America's western coast, the spatiotemporal characteristics and atmospheric forcings driving ARs to SCA need to be further addressed. The goal of this work is to understand the characteristics of ARs that impact SCA and to distinguish them from ARs that impact northern latitudes. We investigate AR characteristics as well as atmospheric features prior to plume initiation for ARs impacting different landfall regions along North America's western coast between 1998-2008. Dates of AR events are organized according to landfall region using total precipitable water (TPW) fields from the National Oceanic and Atmospheric Administration's Climate Forecast System Reanalysis (CFSR). Additional CFSR fields are used to create anomaly composites of moist static energy, geopotential height, as well as upper-level zonal and low-level meridional winds for each landfall region on the day of and prior to AR occurrence. ARs that impact SCA display different TPW plume characteristics as well as wave train patterns throughout the AR

  11. Non-wadeable river bioassessment: spatial variation of benthic diatom assemblages in Pacific Northwest rivers, USA

    EPA Science Inventory

    Current bioassessment efforts are focused on small wadeable streams, at least partly because assessing ecological conditions in non-wadeable large rivers poses many additional challenges. In this study, we sampled 20 sites in each of seven large rivers in the Pacific Northwest, U...

  12. Anthropogenic impacts on mercury concentrations and nitrogen and carbon isotope ratios in fish muscle tissue of the Truckee River watershed, Nevada, USA.

    PubMed

    Sexauer Gustin, Mae; Saito, Laurel; Peacock, Mary

    2005-07-15

    The lower Truckee River originates at Lake Tahoe, California/Nevada (NV), USA and ends in the terminal water body, Pyramid Lake, NV. The river has minimal anthropogenic inputs of contaminants until it encounters the cities of Reno and Sparks, NV, and receives inflows from Steamboat Creek (SBC). SBC originates at Washoe Lake, NV, where there were approximately six mills that used mercury for gold and silver amalgamation in the late 1800s. Since then, mercury has been distributed down the creek to the Truckee River. In addition, SBC receives agricultural and urban nonpoint source pollution, and treated effluent from the Reno-Sparks water reclamation facility. Fish muscle tissue was collected from different species in SBC and the Truckee River and analyzed for mercury and stable isotopes. Nitrogen (delta(15)N) and carbon (delta(13)C) isotopic values in these tissues provide insight as to fish food resources and help to explain their relative Hg concentrations. Mercury concentrations, and delta(15)N and delta(13)C values in fish muscle from the Truckee River, collected below the SBC confluence, were significantly different than that found in fish collected upstream. Mercury concentrations in fish tissue collected below the confluence for all but three fish sampled were significantly greater (0.1 to 0.65 microg/g wet wt.) than that measured in the tissue collected above the confluence (0.02 to 0.1 microg/g). Delta(15)N and delta(13)C isotopic values of fish muscle collected from the river below the confluence were higher and lower, respectively, than that measured in fish collected up river, most likely reflecting wastewater inputs. The impact of SBC inputs on muscle tissue isotope values declined down river whereas the impact due to Hg inputs showed the opposite trend. PMID:16084983

  13. Water availability and land subsidence in the Central Valley, California, USA

    NASA Astrophysics Data System (ADS)

    Faunt, Claudia C.; Sneed, Michelle; Traum, Jon; Brandt, Justin T.

    2015-11-01

    The Central Valley in California (USA) covers about 52,000 km2 and is one of the most productive agricultural regions in the world. This agriculture relies heavily on surface-water diversions and groundwater pumpage to meet irrigation water demand. Because the valley is semi-arid and surface-water availability varies substantially, agriculture relies heavily on local groundwater. In the southern two thirds of the valley, the San Joaquin Valley, historic and recent groundwater pumpage has caused significant and extensive drawdowns, aquifer-system compaction and subsidence. During recent drought periods (2007-2009 and 2012-present), groundwater pumping has increased owing to a combination of decreased surface-water availability and land-use changes. Declining groundwater levels, approaching or surpassing historical low levels, have caused accelerated and renewed compaction and subsidence that likely is mostly permanent. The subsidence has caused operational, maintenance, and construction-design problems for water-delivery and flood-control canals in the San Joaquin Valley. Planning for the effects of continued subsidence in the area is important for water agencies. As land use, managed aquifer recharge, and surface-water availability continue to vary, long-term groundwater-level and subsidence monitoring and modelling are critical to understanding the dynamics of historical and continued groundwater use resulting in additional water-level and groundwater storage declines, and associated subsidence. Modeling tools such as the Central Valley Hydrologic Model, can be used in the evaluation of management strategies to mitigate adverse impacts due to subsidence while also optimizing water availability. This knowledge will be critical for successful implementation of recent legislation aimed toward sustainable groundwater use.

  14. Water availability and land subsidence in the Central Valley, California, USA

    NASA Astrophysics Data System (ADS)

    Faunt, Claudia C.; Sneed, Michelle; Traum, Jon; Brandt, Justin T.

    2016-05-01

    The Central Valley in California (USA) covers about 52,000 km2 and is one of the most productive agricultural regions in the world. This agriculture relies heavily on surface-water diversions and groundwater pumpage to meet irrigation water demand. Because the valley is semi-arid and surface-water availability varies substantially, agriculture relies heavily on local groundwater. In the southern two thirds of the valley, the San Joaquin Valley, historic and recent groundwater pumpage has caused significant and extensive drawdowns, aquifer-system compaction and subsidence. During recent drought periods (2007-2009 and 2012-present), groundwater pumping has increased owing to a combination of decreased surface-water availability and land-use changes. Declining groundwater levels, approaching or surpassing historical low levels, have caused accelerated and renewed compaction and subsidence that likely is mostly permanent. The subsidence has caused operational, maintenance, and construction-design problems for water-delivery and flood-control canals in the San Joaquin Valley. Planning for the effects of continued subsidence in the area is important for water agencies. As land use, managed aquifer recharge, and surface-water availability continue to vary, long-term groundwater-level and subsidence monitoring and modelling are critical to understanding the dynamics of historical and continued groundwater use resulting in additional water-level and groundwater storage declines, and associated subsidence. Modeling tools such as the Central Valley Hydrologic Model, can be used in the evaluation of management strategies to mitigate adverse impacts due to subsidence while also optimizing water availability. This knowledge will be critical for successful implementation of recent legislation aimed toward sustainable groundwater use.

  15. Calibration of numerical models for small debris flows in Yosemite Valley, California, USA

    USGS Publications Warehouse

    Bertolo, P.; Wieczorek, G.F.

    2005-01-01

    This study compares documented debris flow runout distances with numerical simulations in the Yosemite Valley of California, USA, where about 15% of historical events of slope instability can be classified as debris flows and debris slides (Wieczorek and Snyder, 2004). To model debris flows in the Yosemite Valley, we selected six streams with evidence of historical debris flows; three of the debris flow deposits have single channels, and the other three split their pattern in the fan area into two or more channels. From field observations all of the debris flows involved coarse material, with only very small clay content. We applied the one dimensional DAN (Dynamic ANalysis) model (Hungr, 1995) and the two-dimensional FLO2D model (O'Brien et al., 1993) to predict and compare the runout distance and the velocity of the debris flows observed in the study area. As a first step, we calibrated the parameters for the two softwares through the back analysis of three debris- flows channels using a trial-and-error procedure starting with values suggested in the literature. In the second step we applied the selected values to the other channels, in order to evaluate their predictive capabilities. After parameter calibration using three debris flows we obtained results similar to field observations We also obtained a good agreement between the two models for velocities. Both models are strongly influenced by topography: we used the 30 m cell size DTM available for the study area, that is probably not accurate enough for a highly detailed analysis, but it can be sufficient for a first screening. European Geosciences Union ?? 2005 Author(s). This work is licensed under a Creative Commons License.

  16. Selenium bioaccumulation and body condition in shorebirds and terns breeding in San Francisco Bay, California, USA.

    PubMed

    Ackerman, Joshua T; Eagles-Smith, Collin A

    2009-10-01

    The present study evaluated Se bioaccumulation in four waterbird species (n=206 birds) that breed within San Francisco Bay, California, U.S.A.: American avocets (Recurvirostra americana), black-necked stilts (Himantopus mexicanus), Forster's terns (Sterna forsteri), and Caspian terns (Hydroprogne caspia). Selenium concentrations were variable and influenced by several factors, including species, region, reproductive stage, age, and sex. Adult Se concentrations (microg/g dry wt) in livers ranged from 3.07 to 48.70 in avocets (geometric mean +/- standard error, 7.92 +/- 0.64), 2.28 to 41.10 in stilts (5.29 +/- 0.38), 3.73 to 14.50 in Forster's terns (7.13 _ 0.38), and 4.77 to 14.40 in Caspian terns (6.73 +/- 0.78). Avocets had higher Se concentrations in the North Bay compared to the South Bay, whereas stilt Se concentrations were similar between these regions and Forster's terns had lower Se concentrations in the North Bay compared to the South Bay. Female avocets had higher Se concentrations than male avocets, but this was not the case for stilts and Forster's terns. Of the factors assessed, reproductive stage had the most consistent effect among species. Prebreeding birds tended to have higher liver Se concentrations than breeding birds, but this trend was statistically significant only for Forster's terns. Forster's tern chicks had lower Se concentrations than Forster's tern adults, whereas avocet and stilt adults and chicks were similar. Additionally, body condition was negatively related to liver Se concentrations in Forster's tern adults but not in avocet, stilt, or Caspian tern adults and chicks. These variable results illustrate the complexity of Se bioaccumulation and highlight the need to sample multiple species and examine several factors to assess the impact of Se on wildlife. PMID:19459720

  17. Mercury correlations among six tissues for four waterbird species breeding in San Francisco Bay, California, USA.

    PubMed

    Eagles-Smith, Collin A; Ackerman, Joshua T; Adelsbach, Terrence L; Takekawa, John Y; Miles, A Keith; Keister, Robin A

    2008-10-01

    Despite a large body of research concerning mercury (Hg) in birds, no single tissue has been used consistently to assess Hg exposure, and this has hampered comparisons across studies. We evaluated the relationships of Hg concentrations among tissues in four species of waterbirds (American avocets [Recurvirostra americana], black-necked stilts [Himantopus mexicanus], Caspian terns [Hydroprogne caspia; formerly Sterna caspia], and Forster's terns [Sterna forsteri]) and across three life stages (prebreeding adults, breeding adults, and chicks) in San Francisco Bay, California, USA. Across species and life stages, Hg concentrations (least square mean +/- standard error) were highest in head feathers (6.45 +/- 0.31 microg/g dry wt) and breast feathers (5.76 +/- 0.28 microg/g dry wt), followed by kidney (4.54 +/- 0.22 microg/g dry wt), liver (4.43 +/- 0.21 microg/g dry wt), blood (3.10 +/- 0.15 microg/g dry wt), and muscle (1.67 +/- 0.08 microg/g dry wt). Relative Hg distribution among tissues, however, differed by species and life stage. Mercury concentrations were highly correlated among internal tissues (r2 > or = 0.89). Conversely, the relationships between Hg in feathers and internal tissues were substantially weaker (r2 < or = 0.42). Regression slopes sometimes differed among species and life stages, indicating that care must be used when predicting Hg concentrations in one tissue based on those in another. However, we found good agreement between predictions made using a general tissue-prediction equation and more specific equations developed for each species and life stage. Finally, our results suggest that blood is an excellent, nonlethal predictor of Hg concentrations in internal tissues but that feathers are relatively poor indicators of Hg concentrations in internal tissues. PMID:18444697

  18. RNA shotgun metagenomic sequencing of northern California (USA) mosquitoes uncovers viruses, bacteria, and fungi

    PubMed Central

    Chandler, James Angus; Liu, Rachel M.; Bennett, Shannon N.

    2015-01-01

    Mosquitoes, most often recognized for the microbial agents of disease they may carry, harbor diverse microbial communities that include viruses, bacteria, and fungi, collectively called the microbiota. The composition of the microbiota can directly and indirectly affect disease transmission through microbial interactions that could be revealed by its characterization in natural populations of mosquitoes. Furthermore, the use of shotgun metagenomic sequencing (SMS) approaches could allow the discovery of unknown members of the microbiota. In this study, we use RNA SMS to characterize the microbiota of seven individual mosquitoes (species include Culex pipiens, Culiseta incidens, and Ochlerotatus sierrensis) collected from a variety of habitats in California, USA. Sequencing was performed on the Illumina HiSeq platform and the resulting sequences were quality-checked and assembled into contigs using the A5 pipeline. Sequences related to single stranded RNA viruses of the Bunyaviridae and Rhabdoviridae were uncovered, along with an unclassified genus of double-stranded RNA viruses. Phylogenetic analysis finds that in all three cases, the closest relatives of the identified viral sequences are other mosquito-associated viruses, suggesting widespread host-group specificity among disparate viral taxa. Interestingly, we identified a Narnavirus of fungi, also reported elsewhere in mosquitoes, that potentially demonstrates a nested host-parasite association between virus, fungi, and mosquito. Sequences related to 8 bacterial families and 13 fungal families were found across the seven samples. Bacillus and Escherichia/Shigella were identified in all samples and Wolbachia was identified in all Cx. pipiens samples, while no single fungal genus was found in more than two samples. This study exemplifies the utility of RNA SMS in the characterization of the natural microbiota of mosquitoes and, in particular, the value of identifying all microbes associated with a specific host

  19. Detection of the oyster herpesvirus in commercial bivalve in northern California, USA: conventional and quantitative PCR.

    PubMed

    Burge, Colleen A; Strenge, Robyn E; Friedman, Carolyn S

    2011-04-01

    The ostreid herpesvirus (OsHV-1) and related oyster herpesviruses (OsHV) are associated with world-wide mortalities of larval and juvenile bivalves. To quantify OsHV viral loads in mollusc tissues, we developed a SYBR Green quantitative PCR (qPCR) based on the A-region of the OsHV-1 genome. Reaction efficiency and precision were demonstrated using a plasmid standard curve. The analytical sensitivity is 1 copy per reaction. We collected Crassostrea gigas, C. sikamea, C. virginica, Ostrea edulis, O. lurida, Mytilus galloprovincialis, and Venerupis phillipinarum from Tomales Bay (TB), and C. gigas from Drakes Estero (DE), California, U.S.A., and initially used conventional PCR (cPCR) to test for presence of OsHV DNA. Subsequently, viral loads were quantified in selected samples of all tested bivalves except O. lurida. Copy numbers were low in each species tested but were significantly greater in C. gigas (p < 0.0001) compared to all other species, suggesting a higher level of infection. OsHV DNA was detected with cPCR and/or qPCR and confirmed by sequencing in C. gigas, C. sikamea, C. virginica, O. edulis, M. galloprovincialis, and V phillipinarum from TB and C. gigas from DE. These data indicate that multiple bivalve species may act as reservoirs for OsHV in TB. A lack of histological abnormalities in potential reservoirs requires alternative methods for their identification. Further investigation is needed to determine the host-parasite relationship for each potential reservoir, including characterization of viral loads and their relationship with infection (via in situ hybridization), assessments of mortality, and host responses. PMID:21648239

  20. Bed composition generation for morphodynamic modeling: Case study of San Pablo Bay in California, USA

    USGS Publications Warehouse

    van der Wegen, M.; Dastgheib, A.; Jaffe, B.E.; Roelvink, D.

    2011-01-01

    Applications of process-based morphodynamic models are often constrained by limited availability of data on bed composition, which may have a considerable impact on the modeled morphodynamic development. One may even distinguish a period of "morphodynamic spin-up" in which the model generates the bed level according to some ill-defined initial bed composition rather than describing the realistic behavior of the system. The present paper proposes a methodology to generate bed composition of multiple sand and/or mud fractions that can act as the initial condition for the process-based numerical model Delft3D. The bed composition generation (BCG) run does not include bed level changes, but does permit the redistribution of multiple sediment fractions over the modeled domain. The model applies the concept of an active layer that may differ in sediment composition above an underlayer with fixed composition. In the case of a BCG run, the bed level is kept constant, whereas the bed composition can change. The approach is applied to San Pablo Bay in California, USA. Model results show that the BCG run reallocates sand and mud fractions over the model domain. Initially, a major sediment reallocation takes place, but development rates decrease in the longer term. Runs that take the outcome of a BCG run as a starting point lead to more gradual morphodynamic development. Sensitivity analysis shows the impact of variations in the morphological factor, the active layer thickness, and wind waves. An important but difficult to characterize criterion for a successful application of a BCG run is that it should not lead to a bed composition that fixes the bed so that it dominates the "natural" morphodynamic development of the system. Future research will focus on a decadal morphodynamic hindcast and comparison with measured bathymetries in San Pablo Bay so that the proposed methodology can be tested and optimized. ?? 2010 The Author(s).

  1. Assessment of sediment toxicity and chemical concentrations in the San Diego Bay region, California, USA

    SciTech Connect

    Fairey, R.; Roberts, C.; Jacobi, M.

    1998-08-01

    Sediment quality within San Diego Bay, Mission Bay, and the Tijuana River Estuary of California was investigated as part of an ongoing statewide monitoring effort (Bay Protection and Toxic Cleanup Program). Study objectives were to determine the incidence, spatial patterns, and spatial extent of toxicity in sediments and porewater; the concentration and distribution of potentially toxic anthropogenic chemicals; and the relationships between toxicity and chemical concentrations. Rhepoxynius abronius survival bioassays, grain size, and total organic carbon analyses were performed on 350 sediment samples. Strongylocentrotus purpuratus development bioassays were performed on 164 pore-water samples. Toxicity was demonstrated throughout the San Diego Bay region, with increased incidence and concordance occurring in areas of industrial and shipping activity. Trace metal and trace synthetic organic analyses were performed on 229 samples. Copper, zinc, mercury, polycyclic aromatic hydrocarbons, polychlorinated biphenyls, and chlordane were found to exceed ERM (effects range median) or PEL (probable effects level) sediment quality guidelines and were considered the six major chemicals or chemical groups of concern. Statistical analysis of the relationships between amphipod toxicity, bulk phase sediment chemistry, and physical parameters demonstrated few significant linear relationships. Significant differences in chemical levels were found between toxic and nontoxic responses using multivariate and univariate statistics. Potential sources of anthropogenic chemicals were discussed.

  2. Transport of diazinon in the San Joaquin River Basin, California

    USGS Publications Warehouse

    Kratzer, C.R.

    1999-01-01

    Most of the application of the organophosphate insecticide diazinon in the San Joaquin River Basin occurs in winter to control wood-boring insects in dormant almond orchards. A federal-state collaborative study found that diazinon accounted for most of the observed toxicity of San Joaquin River water in February 1993. Previous studies focused mainly on west-side inputs to the San Joaquin River. In this 1994 study, the three major east-side tributaries to the San Joaquin River - the Merced, Tuolumne, and Stanislaus rivers - and a downstream site on the San Joaquin River were sampled throughout the hydrographs of a late January and an early February storm. In both storms, the Tuolumne River had the highest concentrations of diazinon and transported the largest load of the three tributaries. The Stanislaus River was a small source in both storms. On the basis of previous storm sampling and estimated travel times, ephemeral west-side creeks probably were the main diazinon source early in the storms, whereas the Tuolumne and Merced rivers and east-side drainages directly to the San Joaquin River were the main sources later. Although 74 percent of diazinon transport in the San Joaquin River during 1991-1993 occurred in January and February, transport during each of the two 1994 storms was only 0.05 percent of the amount applied during preceding dry periods. Nevertheless, some of the diazinon concentrations in the San Joaquin River during the January storm exceeded 0.35 ??g/L, a concentration shown to be acutely toxic to water fleas. On the basis of this study and previous studies, diazinon concentrations and streamflow are highly variable during January and February storms, and frequent sampling is required to evaluate transport in the San Joaquin River Basin.

  3. Observations and Impacts from the 2010 Chilean and 2011 Japanese Tsunamis in California (USA)

    NASA Astrophysics Data System (ADS)

    Wilson, Rick I.; Admire, Amanda R.; Borrero, Jose C.; Dengler, Lori A.; Legg, Mark R.; Lynett, Patrick; McCrink, Timothy P.; Miller, Kevin M.; Ritchie, Andy; Sterling, Kara; Whitmore, Paul M.

    2013-06-01

    The coast of California was significantly impacted by two recent teletsunami events, one originating off the coast of Chile on February 27, 2010 and the other off Japan on March 11, 2011. These tsunamis caused extensive inundation and damage along the coast of their respective source regions. For the 2010 tsunami, the NOAA West Coast/Alaska Tsunami Warning Center issued a state-wide Tsunami Advisory based on forecasted tsunami amplitudes ranging from 0.18 to 1.43 m with the highest amplitudes predicted for central and southern California. For the 2011 tsunami, a Tsunami Warning was issued north of Point Conception and a Tsunami Advisory south of that location, with forecasted amplitudes ranging from 0.3 to 2.5 m, the highest expected for Crescent City. Because both teletsunamis arrived during low tide, the potential for significant inundation of dry land was greatly reduced during both events. However, both events created rapid water-level fluctuations and strong currents within harbors and along beaches, causing extensive damage in a number of harbors and challenging emergency managers in coastal jurisdictions. Field personnel were deployed prior to each tsunami to observe and measure physical effects at the coast. Post-event survey teams and questionnaires were used to gather information from both a physical effects and emergency response perspective. During the 2010 tsunami, a maximum tsunami amplitude of 1.2 m was observed at Pismo Beach, and over 3-million worth of damage to boats and docks occurred in nearly a dozen harbors, most significantly in Santa Cruz, Ventura, Mission Bay, and northern Shelter Island in San Diego Bay. During the 2011 tsunami, the maximum amplitude was measured at 2.47 m in Crescent City Harbor with over 50-million in damage to two dozen harbors. Those most significantly affected were Crescent City, Noyo River, Santa Cruz, Moss Landing, and southern Shelter Island. During both events, people on docks and near the ocean became at risk to

  4. Transport of diazinon in the San Joaquin River basin, California

    USGS Publications Warehouse

    Kratzer, Charles R.

    1997-01-01

    Most of the application of the organophosphate insecticide diazinon in the San Joaquin River Basin occurs in winter to control wood boring insects in dormant almond orchards. A federal-state collaborative study found that diazinon accounted for most of the observed toxicity of San Joaquin River water to water fleas in February 1993. Previous studies focussed mainly on west-side inputs to the San Joaquin River. In this 1994 study, the three major east-side tributaries to the San Joaquin River, the Merced, Tuolumne, and Stanislaus Rivers, and a downstream site on the San Joaquin River were sampled throughout the hydrographs of a late January and an early February storm. In both storms, the Tuolumne River had the highest concentrations of diazinon and transported the largest load of the three tributaries. The Stanislaus River was a small source in both storms. On the basis of previous storm sampling and estimated traveltimes, ephemeral west-side creeks were probably the main diazinon source early in the storms, while the Tuolumne and Merced Rivers and east-side drainage directly to the San Joaquin River were the main sources later. Although 74 percent of diazinon transport in the San Joaquin River during 199193 occurred in January and February, transport during each of the two 1994 storms was only 0.05 percent of the amount applied during preceeding dry periods. Nevertheless, some of the diazinon concentrations in the San Joaquin River during the January storm exceeded 0.35 micrograms per liter, a concentration shown to be acutely toxic to water fleas. Diazinon concentrations were highly variable during the storms and frequent sampling was required to adequately describe the concentration curves and to estimate loads.

  5. Evaluation of Stream Loads Used to Calibrate a SPARROW Model for California, USA

    NASA Astrophysics Data System (ADS)

    Domagalski, J. L.; Saleh, D.

    2012-12-01

    A SPARROW (Spatially Referenced Regression on Watershed Attributes) Model is being developed for California. The model will be used to understand how Total Nitrogen (TN) and Total Phosphorus (TP) are transported from land to water from sources such as the atmosphere, fertilizer, soils, wastewater treatment facilities, etc., and relies on accurate calibration of mass loads obtained from water sampling at gauging stations in order to link mass at a location to upstream sources. Prior to input to the SPARROW model, the mass loads are calculated separately using a five-parameter log linear multi-regression model utilizing discharge, chemical measurements, time, and seasonal adjustments to obtain the best fit for the relationship of discharge and concentration. The gauging stations are situated in three ecological management zones as defined by the U.S. Environmental Protection Agency: the Western Forested Mountains, the Central Valley, and the Xeric West. Load models for nitrogen have at times been shown to be positively biased when the form of TN is predominately nitrate. The regions under study have different sources of nitrogen, which will affect the form of TN transported. Some stream segments are natural settings (forested), while others are highly influenced by agriculture and urban (Central Valley) settings and others by arid climate (Xeric). These differences affect the form of TN transported (dissolved as nitrate or suspended in the form of organic nitrogen), and hence it is expected that the efficiency of the discharge-load model may not be uniform at all locations. Less than 10% of the TN is in the form of nitrate in streams of the western forested mountains, but about 30% is nitrate in the Central Valley and about 40% in the arid region. Model efficiency was evaluated using the Nash Sutcliffe (NS) equation, which examines the square of the residuals of modeled results and observed values after transforming the logarithm of loads back to the actual data

  6. Assessing management options to reduce water temperatures in regulated rivers of California

    NASA Astrophysics Data System (ADS)

    Pike, A.; Danner, E.; Boughton, D. A.; Harrison, L.

    2014-12-01

    In many regulated rivers throughout the western United States, deliberate management of water temperature below reservoirs is crucial to the survival of endangered salmonids. However, management options at reservoirs are often limited to adjusting either the flow volume and/or release temperature to alter the downstream water temperature. Here we investigate the efficacy of this approach in three major regulated rivers in California: the Sacramento River, the Klamath River, and the St. Ynez River. We use a 1-dimensional water temperature model (RAFT) to compute heat fluxes to/from the river based on meteorological conditions, channel bathymetry, and reservoir releases. A sensitivity analysis evaluates the thermal response of the river to reservoir releases during summertime flow conditions. Results indicate that the water temperature dynamics downstream of reservoirs vary between rivers. Although both the Sacramento and Klamath Rivers exhibit cooling in response to increased flows, the Sacramento River is cooled more effectively by decreasing the release temperature. In contrast, increased flow rate in the St. Ynez River does not as strongly influence downstream temperatures due to shallower flows combined with significant thermal buffering already provided by deep alluvial streambed.

  7. Large-scale dam removal on the Elwha River, Washington, USA: coastal geomorphic change

    USGS Publications Warehouse

    Gelfenbaum, Guy R.; Stevens, Andrew W.; Miller, Ian M.; Warrick, Jonathan A.; Ogston, Andrea S.; Eidam, Emily

    2015-01-01

    Two dams on the Elwha River, Washington State, USA trapped over 20 million m3 of mud, sand, and gravel since 1927, reducing downstream sediment fluxes and contributing to erosion of the river's coastal delta. The removal of the Elwha and Glines Canyon dams, initiated in September 2011, induced massive increases in river sediment supply and provided an unprecedented opportunity to examine the geomorphic response of a coastal delta to these increases. Detailed measurements of beach topography and nearshore bathymetry show that ~ 2.5 million m3 of sediment was deposited during the first two years of dam removal, which is ~ 100 times greater than deposition rates measured prior to dam removal. The majority of the deposit was located in the intertidal and shallow subtidal region immediately offshore of the river mouth and was composed of sand and gravel. Additional areas of deposition include a secondary sandy deposit to the east of the river mouth and a muddy deposit west of the mouth. A comparison with fluvial sediment fluxes suggests that ~ 70% of the sand and gravel and ~ 6% of the mud supplied by the river was found in the survey area (within about 2 km of the mouth). A hydrodynamic and sediment transport model, validated with in-situ measurements, shows that tidal currents interacting with the larger relict submarine delta help disperse fine sediment large distances east and west of the river mouth. The model also suggests that waves and currents erode the primary deposit located near the river mouth and transport sandy sediment eastward to form the secondary deposit. Though most of the substrate of the larger relict submarine delta was unchanged during the first two years of dam removal, portions of the seafloor close to the river mouth became finer, modifying habitats for biological communities. These results show that river restoration, like natural changes in river sediment supply, can result in rapid and substantial coastal geomorphological

  8. 76 FR 9740 - Plumas National Forest, Feather River Ranger District; California; On Top Hazardous Fuels...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-02-22

    ... Forest Service Plumas National Forest, Feather River Ranger District; California; On Top Hazardous Fuels... statement. SUMMARY: The On Top Hazardous Fuels Reduction Project would construct a Defensible Fuel Profile... designing the On Top Hazardous Fuels Reduction Project on National Forest System land in compliance with...

  9. Germination characteristics of Zannichellia palustris from a northern California spring-fed river

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The germination characteristics of Zannichellia palustris seeds collected from the spring-fed Fall River of Northern California were investigated across a range of constant temperatures from 4.2 to 40.8 ºC. Germination experiments were conducted on freshly produced and collected seeds. Seeds germina...

  10. Simulation and control of morphological changes due to dam removal in the Sandy River, Oregon, USA

    NASA Astrophysics Data System (ADS)

    Ding, Y.; Altinakar, M. S.

    2015-03-01

    A one-dimensional channel evolution simulation model (CCHE1D) is applied to assess morphological changes in a reach of the Sandy River, Oregon, USA, due to the Marmot Dam removal in 2007. Sediment transport model parameters (e.g. sediment transport capacity, bed roughness coefficient) were calibrated using observed bed changes after the dam removal. The validated model is then applied to assess long-term morphological changes in response to a 10-year hydrograph selected from historical storm water records. The long-term assessment of sedimentation gives a reasonable prediction of morphological changes, expanding erosion in reservoir and growing deposition immediately downstream of the dam site. This prediction result can be used for managing and planning river sedimentation after dam removal. A simulation-based optimization model is also applied to determine the optimal sediment release rates during dam-removal that will minimize the morphological changes in the downstream reaches.

  11. Organic matter sources and rehabilitation of the Sacramento-San Joaquin Delta (California, USA)

    USGS Publications Warehouse

    Jassby, A.D.; Cloern, J.E.

    2000-01-01

    1. The Sacramento San Joaquin River Delta, a complex mosaic of tidal freshwater habitats in California, is the focus of a major ecosystem rehabilitation effort because of significant long-term changes in critical ecosystem functions. One of these functions is the production, transport and transformation of organic matter that constitutes the primary food supply, which may be sub-optimal at trophic levels supporting fish recruitment. A long historical data set is used to define the most important organic matter sources, the factors underlying their variability, and the implications of ecosystem rehabilitation actions for these sources. 2. Tributary-borne loading is the largest organic carbon source on an average annual Delta-wide basis; phytoplankton production and agricultural drainage are secondary; wastewater treatment plant discharge, tidal marsh drainage and possibly aquatic macrophyte production are tertiary; and benthic microalgal production, urban run-off and other sources are negligible. 3. Allochthonous dissolved organic carbon must be converted to particulate form - with losses due to hydraulic flushing and to heterotroph growth inefficiency - before it becomes available to the metazoan food web. When these losses are accounted for, phytoplankton production plays a much larger role than is evident from a simple accounting of bulk organic carbon sources, especially in seasons critical for larval development and recruitment success. Phytoplankton-derived organic matter is also an important component of particulate loading to the Delta. 4. The Delta is a net producer of organic matter in critically dry years but, because of water diversion from the Delta, transport of organic matter from the Delta to important, downstream nursery areas in San Francisco Bay is always less than transport into the Delta from upstream sources. 5. Of proposed rehabilitation measures, increased use of floodplains probably offers the biggest increase in organic matter sources. 6

  12. Latest Pliocene and Quaternary diatom floras of the Lake Tahoe basin, California and Nevada, USA

    NASA Astrophysics Data System (ADS)

    Starratt, S. W.

    2005-12-01

    Despite an active research program at Lake Tahoe, few attempts have been made to understand the conditions that existed within the watershed prior to European contact. A greater understanding of the Quaternary history of the basin would not only benefit local stakeholders, but would also enhance the knowledge of the entire Truckee River system. Lake Tahoe has been called one of the most oligotrophic lakes in the world. Historically, the lake has contained low levels of phosphorus (5 g/L) and nitrogen (100 g/L). As a result, the abundance of phytoplankton and zooplankton is also low. Over the past century anthropogenic inputs have caused parts of the lake to become seasonally mesotrophic. The impact of climate variability on the nutrient load in the lake is poorly known. Detailed analysis of the pre-European contact record is necessary in order to unravel the complex interaction between natural and human inputs to the watershed. Dredge samples collected from slump blocks and surface sediments in the deep basin and surface samples collected at a number of sites around the margin of Lake Tahoe have been analyzed for diatoms and chrysophyte stomatocysts. The deep lake basin diatom flora is dominated by planktonic, oligotrophic, alkaliphilic taxa such as Cyclotella bodanica and C. ocellata. Planktonic and obligate planktonic taxa ( Aulacoseira distans, Fragilaria crotonensis, Stephanodiscus spp.) found close to shore and benthic taxa are representative of oligotrophic to eutrophic conditions ( Frustulia rhomboides, Tetracyclus glans, Achnanthes minutissima, Epithemia spp., Rhopalodia gibba, Meridion circulare). Several samples of diatomaceous sediment collected near Tahoe City, California, on the west side of the lake, contain taxa that are representative of shallow, more eutrophic conditions and at least one of these samples contains late Pliocene taxa ( Tertiarius sp., Pliocaenicus sp.), which suggests that at least locally, the lake at that time was shallower and was

  13. Pliocene to late Pleistocene magmatism in the Aurora Volcanic Field, Nevada and California, USA

    NASA Astrophysics Data System (ADS)

    Kingdon, S.; Cousens, B.; John, D. A.; du Bray, E. A.

    2013-12-01

    The 3.9- 0.1 Ma Aurora Volcanic Field (AVF) covers 325 km2 east and southeast of the Bodie Hills, north of Mono Lake, California, USA. The AVF is located immediately northwest of the Long Valley magmatic system and adjacent and overlapping the Miocene Bodie Hills Volcanic Field (BHVF). Rock types range from trachybasalt to trachydacite, and high-silica rhyolite. The trachybasalts to trachydacites are weakly to moderately porphyritic (1-30%) with variable phenocryst assemblages that are some combination of plagioclase, hornblende, clinopyroxene, and lesser orthopyroxene, olivine, and/or biotite. Microphenocrysts are dominated by plagioclase, and include opaque oxides, clinopyroxene, and apatite. These rocks are weakly to strongly devitrified. The high-silica rhyolites are sparsely porphyritic with trace to 10% phenocrysts of quartz, sanidine, plagioclase, biotite, (+/- hornblende), accessory opaque oxide minerals, titanite, allanite, (+/-apatite, zircon), and have glassy groundmasses. Rocks in the AVF are less strongly porphyritic than those of BHVF. Plagioclase phenocrysts are often oscillatory zoned and many have sieve texture. Amphiboles have distinct black opaque rims. Xenocrystic quartz and plagioclase are rare. AVF lavas have bimodal SiO2 compositions, ranging from 49 to 78 wt%, with a gap between 65 and 75 wt%. They are high-K calc-alkaline to shoshonitic in composition, and are metaluminous to weakly peraluminous. They are enriched in rare earth elements (REE), especially light REEs, compared to the Miocene BHVF rocks. Primordial mantle-normalized incompatible element patterns show arc- or subduction-related signatures, with enrichment in Ba and Pb, and depletion in Nb and Ta. Enrichment in K and Sr and depletion in Ti are less pronounced than in the BHVF rocks. There is no correlation between lead isotope ratios and silica (initial 206Pb/204Pb ratios range from 18.974 to 19.151). Neodymium isotope ratios show a moderate negative correlation with silica

  14. Holocene climate on the Modoc Plateau, northern California, USA: The view from Medicine Lake

    USGS Publications Warehouse

    Starratt, S.W.

    2009-01-01

    Medicine Lake is a small (165 ha), relatively shallow (average 7.3 m), intermediate elevation (2,036 m) lake located within the summit caldera of Medicine Lake volcano, Siskiyou County, California, USA. Sediment cores and high-resolution bathymetric and seismic reflection data were collected from the lake during the fall of 1999 and 2000. Sediments were analyzed for diatoms, pollen, density, grain size (sand/mud ratio), total organic carbon (TOC), and micro-scale fabric analysis. Using both 14C (AMS) dating and tephrochronology, the basal sediments were estimated to have been deposited about 11,400 cal year BP, thus yielding an estimated average sedimentation rate of about 20.66 cm/1,000 year. The lowermost part of the core (11,400-10,300 cal year BP) contains the transition from glacial to interglacial conditions. From about 11,000-5,500 cal year BP, Medicine Lake consisted of two small, steep-sided lakes or one lake with two steep-sided basins connected by a shallow shelf. During this time, both the pollen (Abies/Artemisia ratio) and the diatom (Cyclotella/Navicula ratio) evidences indicate that the effective moisture increased, leading to a deeper lake. Over the past 5,500 years, the pollen record shows that effective moisture continued to increase, and the diatom record indicates fluctuations in the lake level. The change in the lake level pattern from one of the increasing depths prior to about 6,000 cal year BP to one of the variable depths may be related to changes in the morphology of the Medicine Lake caldera associated with the movement of magma and the eruption of the Medicine Lake Glass Flow about 5,120 cal year BP. These changes in basin morphology caused Medicine Lake to flood the shallow shelf which surrounds the deeper part of the lake. During this period, the Cyclotella/Navicula ratio and the percent abundance of Isoetes vary, suggesting that the level of the lake fluctuated, resulting in changes in the shelf area available for colonization by

  15. Thin layers and species-specific characterization of the phytoplankton community in Monterey Bay, California, USA

    NASA Astrophysics Data System (ADS)

    Rines, J. E. B.; McFarland, M. N.; Donaghay, P. L.; Sullivan, J. M.

    2010-01-01

    During the summers of 2005 and 2006, experiments designed to understand the properties of densely concentrated, thin layers of plankton and the processes governing their dynamics were conducted in Monterey Bay, California, USA. Our goal was to elucidate the role that species-specific properties of phytoplankton play in thin layer dynamics. Using adaptive sampling, we collected water samples from inside and outside bio-optical features of the water column. Characterization of the phytoplankton was compiled from live and preserved samples, and analyzed within a framework of physical, optical, chemical and acoustical data. In both years, Monterey Bay was home to an extraordinarily diverse assemblage of phytoplankton and other protists. Bioluminescent dinoflagellates, and Harmful Algal Bloom (HAB) taxa were common. In 2005, community assemblages were widespread, thus advection of water through the experimental mooring array did not result in floristic changes. In 2006 phytoplankton were very patchy in horizontal distribution, and advection of water through the array was at times accompanied by dramatic shifts in community composition. Individual taxa often exhibited disparate patterns of vertical distribution, with some found throughout the water column, whereas others were restricted to narrow depth intervals. Thin layers were observed in both years. In 2005, the dinoflagellate Akashiwo sanguinea formed intense thin layers near the pycnocline at night, and migrated to near surface waters at dawn. In 2006, layer composition was more complex, and related to the water mass present at the time of sampling. Optically detected thin layers of phytoplankton can be studied from the perspective of the impact their high biomass has on both ecological processes, and ocean optics. But thin layers can also be studied from the species-specific perspective of each organism, its role within the thin layer habitat, and the impact that life within a thin layer has on its life history

  16. Trends in the suspended-sediment yields of coastal rivers of northern California, 1955–2010

    USGS Publications Warehouse

    Warrick, J.A.; Madej, M.A.; Goñi, M. A.; Wheatcroft, R.A.

    2013-01-01

    Time-dependencies of suspended-sediment discharge from six coastal watersheds of northern California – Smith River, Klamath River, Trinity River, Redwood Creek, Mad River, and Eel River – were evaluated using monitoring data from 1955 to 2010. Suspended-sediment concentrations revealed time-dependent hysteresis and multi-year trends. The multi-year trends had two primary patterns relative to river discharge: (i) increases in concentration resulting from both land clearing from logging and the flood of record during December 1964 (water year 1965), and (ii) continual decreases in concentration during the decades following this flood. Data from the Eel River revealed that changes in suspended-sediment concentrations occurred for all grain-size fractions, but were most pronounced for the sand fraction. Because of these changes, the use of bulk discharge-concentration relationships (i.e., “sediment rating curves”) without time-dependencies in these relationships resulted in substantial errors in sediment load estimates, including 2.5-fold over-prediction of Eel River sediment loads since 1979. We conclude that sediment discharge and sediment discharge relationships (such as sediment rating curves) from these coastal rivers have varied substantially with time in response to land use and climate. Thus, the use of historical river sediment data and sediment rating curves without considerations for time-dependent trends may result in significant errors in sediment yield estimates from the globally-important steep, small watersheds.

  17. Changes in productivity and contaminants in bald eagles nesting along the lower Columbia River, USA.

    PubMed

    Buck, Jeremy A; Anthony, Robert G; Schuler, Carol A; Isaacs, Frank B; Tillitt, Donald E

    2005-07-01

    Previous studies documented poor productivity of bald eagles (Haliaeetus leucocephalus) in the lower Columbia River (LCR), USA, and elevated p,p'-dichlorodiphenyldichloroethylene (DDE), polychlorinated biphenyls (PCBs), dioxins, and furans in eagle eggs. From 1994 to 1995, we collected partially incubated eggs at 19 of 43 occupied territories along the LCR and compared productivity and egg contaminants to values obtained in the mid-1980s. We found higher productivity at new nesting sites along the river, yet productivity at 23 older breeding territories remained low and was not different (p = 0.713) between studies. Eggshell thickness at older territories had not improved (p = 0.404), and eggshells averaged 11% thinner than shells measured before dichlorodiphenyltrichloroethane use. Decreases in DDE (p = 0.022) and total PCBs (p = 0.0004) in eggs from older breeding areas occurred between study periods. Productivity was not correlated to contaminants, but DDE, PCBs, and dioxin-like chemicals exceeded estimated no-effect values. Some dioxin-like contaminants in eggs were correlated to nest location, with highest concentrations occurring toward the river's mouth where productivity was lowest. Although total productivity increased due to the success of new nesting pairs in the region, egg contaminants remain high enough to impair reproduction at older territories and, over time, may alter productivity of new pairs nesting near the river's mouth. PMID:16050597

  18. Changes in productivity and contaminants in bald eagles nesting along the lower Columbia River, USA

    USGS Publications Warehouse

    Buck, J.A.; Anthony, R.G.; Schuler, C.A.; Isaacs, F.B.; Tillitt, D.E.

    2005-01-01

    Previous studies documented poor productivity of bald eagles (Haliaeetus leucocephalus) in the lower Columbia River (LCR), USA, and elevated p,p???-dichlorodiphenyldichloroethylene (DDE), polychlorinated biphenyls (PCBs), dioxins, and furans in eagle eggs. From 1994 to 1995, we collected partially incubated eggs at 19 of 43 occupied territories along the LCR and compared productivity and egg contaminants to values obtained in the mid-1980s. We found higher productivity at new nesting sites along the river, yet productivity at 23 older breeding territories remained low and was not different (p = 0.713) between studies. Eggshell thickness at older territories had not improved (p = 0.404), and eggshells averaged 11% thinner than shells measured before dichlorodiphenyltrichloroethane use. Decreases in DDE (p = 0.022) and total PCBs (p = 0.0004) in eggs from older breeding areas occurred between study periods. Productivity was not correlated to contaminants, but DDE, PCBs, and dioxin-like chemicals exceeded estimated no-effect values. Some dioxin-like contaminants in eggs were correlated to nest location, with highest concentrations occurring toward the river's mouth where productivity was lowest. Although total productivity increased due to the success of new nesting pairs in the region, egg contaminants remain high enough to impair reproduction at older territories and, over time, may alter productivity of new pairs nesting near the river's mouth. ?? 2005 SETAC.

  19. Dermatitis among workers cleaning the Sacramento River after a chemical spill--California, 1991

    SciTech Connect

    Not Available

    1991-12-06

    On July 14, 1991, a train tanker car derailed in northern California, spilling 19,000 gallons of the soil fumigant metam sodium (sodium methyldithiocarbamate) into the Sacramento River north of Redding. The major breakdown product of metam sodium, methylisothiocyanate (MITC), is a known skin irritant at high concentrations (greater than 1%). By July 21, the concentration of MITC in the river, at multiple test sites, measured 20-40 parts per billion (0.01%). On August 6, Shasta County health officials notified the California Department of Health Services (CDHS) of an outbreak of dermatitis among Shasta County jail inmates and crew leaders who had assisted in removing dead fish from the river on July 21-22 in greater than 100 F (greater than 38 C) ambient temperature.

  20. Discovery of South American suckermouth armored catfishes (Loricariidae, Pterygoplichthys spp.) in the Santa Fe River drainage, Suwannee River basin, USA

    USGS Publications Warehouse

    Nico, Leo G.; Butt, Peter L.; Johnston, Gerald R.; Jelks, Howard L.; Kail, Matthew; Walsh, Stephen J.

    2012-01-01

    We report on the occurrence of South American suckermouth armored catfishes (Loricariidae) in the Suwannee River basin, southeastern USA. Over the past few years (2009-2012), loricariid catfishes have been observed at various sites in the Santa Fe River drainage, a major tributary of the Suwannee in the state of Florida. Similar to other introduced populations of Pterygoplichthys, there is high likelihood of hybridization. To date, we have captured nine specimens (270-585 mm, standard length) in the Santa Fe River drainage. One specimen taken from Poe Spring best agrees with Pterygoplichthys gibbiceps (Kner, 1854) or may be a hybrid with either P. pardalis or P. disjunctivus. The other specimens were taken from several sites in the drainage and include seven that best agree with Pterygoplichthys disjunctivus (Weber, 1991); and one a possible P. disjunctivus x P. pardalis hybrid. We observed additional individuals, either these or similar appearing loricariids, in Hornsby and Poe springs and at various sites upstream and downstream of the long (> 4 km) subterranean portion of the Santa Fe River. These specimens represent the first confirmed records of Pterygoplichthys in the Suwannee River basin. The P. gibbiceps specimen represents the first documented record of an adult or near adult of this species in open waters of North America. Pterygoplichthys disjunctivus or its hybrids (perhaps hybrid swarms) are already abundant and widespread in other parts of peninsular Florida, but the Santa Fe River represents a northern extension of the catfish in the state. Pterygoplichthys are still relatively uncommon in the Santa Fe drainage and successful reproduction not yet documented. However, in May 2012 we captured five adult catfish (two mature or maturing males and three gravid females) from a single riverine swallet pool. One male was stationed at a nest burrow (no eggs present). To survive the occasional harsh Florida winters, these South American catfish apparently use

  1. Water quality assessment of the Sacramento River Basin, California; environmental setting and study design

    USGS Publications Warehouse

    Domagalski, Joseph L.; Knifong, Donna L.; MacCoy, Dorene E.; Dileanis, Peter D.; Dawson, Barbara J.; Majewski, Michael S.

    1998-01-01

    This report describes the environmental setting and investigative activities of the Sacramento River Basin study unit of the National Water-Quality Assessment Program. The Sacramento River Basin is one of 60 study units located throughout the United States that has been scheduled for study as part of the National Water-Quality Assessment Program. The Sacramento River Basin is the most important source of freshwater in California. Water quality studies in the Sacramento River Basin study unit focus on the Sacramento Valley because it is here that the principal uses of water and potential impacts on water quality occur. Investigative activities include a network of surface water sites, where water chemistry and aquatic biological sampling are done, and a variety of ground water studies. In addition, investigations of the cycling and distribution of volatile organic compounds in the urban environment and the distribution of total and methyl mercury in the Sacramento River and tributaries will be completed.

  2. Concentrations of organic contaminants detected during managed flow conditions, San Joaquin River and Old River, California, 2001

    USGS Publications Warehouse

    Orlando, James L.; Kuivila, Kathryn M.

    2005-01-01

    Concentrations of organic contaminants were determined in water samples collected at six surface-water sites located along the San Joaquin and Old Rivers during April through June 2001. Water samples were collected, coincident with salmon smolt caging studies conducted by researchers from the Bodega Marine Laboratory at the University of California at Davis to characterize exposure of the salmon smolt to organic contaminants. Sampling occurred prior to, during, and following the implementation of managed streamflow conditions on the San Joaquin and Old Rivers as part of the Vernalis Adaptive Management Plan. Thirteen pesticides were detected in water samples collected during this study, and at least five pesticides were detected in each sample. The total number of pesticide detections varied little between river systems and between sites, but the maximum concentrations of most pesticides occurred in San Joaquin River samples. The total number of pesticides detected varied little over the three time periods. However, during the period of managed streamflow, the fewest number of pesticides were detected at their absolute maximum concentration. Nine wastewater compounds were detected during this study. Suspended-sediment concentrations were similar for the San Joaquin and Old Rivers except during the period of managed streamflow conditions, when suspended-sediment concentration was higher at sites on the San Joaquin River than at sites on the Old River. Values for water parameters (pH, specific conductance, and hardness) were lowest during the period of managed flows.

  3. ORGANIC POLLUTANT DEPOSITION TO THE SIERRA NEVADA (CALIFORNIA, USA) SNOWPACK AND ASSOCIATED LAKE AND STREAM ECOSYSTEM

    EPA Science Inventory

    High elevation ecosystems in the western USA and Canada are receiving deposition of persistent organic pollutants (POPs) that presumably originate in the USA as well as outside its borders. In April 1992 we obtained paired snowpack samples from each of two watersheds located in t...

  4. Effects of hydrologic infrastructure on flow regimes of California's Central Valley rivers: Implications for fish populations

    USGS Publications Warehouse

    Brown, Larry R.; Bauer, Marissa L.

    2010-01-01

    Alteration of natural flow regimes is generally acknowledged to have negative effects on native biota; however, methods for defining ecologically appropriate flow regimes in managed river systems are only beginning to be developed. Understanding how past and present water management has affected rivers is an important part of developing such tools. In this paper, we evaluate how existing hydrologic infrastructure and management affect streamflow characteristics of rivers in the Central Valley, California and discuss those characteristics in the context of habitat requirements of native and alien fishes. We evaluated the effects of water management by comparing observed discharges with estimated discharges assuming no water management ("full natural runoff"). Rivers in the Sacramento River drainage were characterized by reduced winter–spring discharges and augmented discharges in other months. Rivers in the San Joaquin River drainage were characterized by reduced discharges in all months but particularly in winter and spring. Two largely unaltered streams had hydrographs similar to those based on full natural runoff of the regulated rivers. The reduced discharges in the San Joaquin River drainage streams are favourable for spawning of many alien species, which is consistent with observed patterns of fish distribution and abundance in the Central Valley. However, other factors, such as water temperature, are also important to the relative success of native and alien resident fishes. As water management changes in response to climate change and societal demands, interdisciplinary programs of research and monitoring will be essential for anticipating effects on fishes and to avoid unanticipated ecological outcomes.

  5. Tobacco use prevalence and correlates among adolescents in a clinician initiated tobacco prevention trial in California, USA.

    PubMed Central

    Hovell, M F; Slymen, D J; Keating, K J; Jones, J A; Burkham-Kreitner, S; Hofstetter, C R; Noel, D; Rubin, B

    1996-01-01

    OBJECTIVES: Baseline data for the clinician initiated, tobacco prevention trial, the first non-school based clinician mediated tobacco prevention study, were used to explore the degree to which young people receiving orthodontic treatment use tobacco and the differences in use rates between national, California, and patient samples. Correlates of tobacco use were identified and these correlates were contrasted with findings from the published reports. DESIGN AND SETTING: A 26 item telephone survey assessed demographic information, tobacco use, selected health related behaviours, and variables based on social learning theory. The study was conducted among 11 to 18 year old orthodontic patients from San Diego, Orange, Riverside, San Bernardino, and Los Angeles Counties, California, USA. PARTICIPANTS: Of the 17925 patients who were eligible, 16915 (> 94%) completed the survey. MEASUREMENTS AND MAIN RESULTS: Multivariate analyses were conducted using a logistic mixed effects model. Although the 30 day prevalence rate of tobacco use (6%, n = 1010) proved lower than California and national samples, the rates for the age, gender, and race ethnicity subgroups showed trends similar to those seen in California and national samples. Ten variables were significantly associated with tobacco use (p < 0.05), including 30 day alcohol use (OR = 7.88), age (OR = 1.32), and living with a tobacco user (OR = 1.72). CONCLUSIONS: Because 6% of orthodontic patients use tobacco, interventions are warranted to reach the health "Objectives for the Nation". Patterns of correlates of tobacco use were essentially the same for orthodontic patients, California, and national samples, suggesting that these associations are generalisable. PMID:8935468

  6. Flies from L.A., The Sequel: A further twelve new species of Megaselia (Diptera: Phoridae) from the BioSCAN Project in Los Angeles (California, USA)

    PubMed Central

    Brown, Brian V.; Disney, R. Henry L.

    2016-01-01

    Abstract Background Presented are continued results from the BioSCAN Project, an urban biodiversity study sampling primarily from private backyards in Los Angeles, California (USA). Presented are continued results from the BioSCAN Project, an urban biodiversity study sampling primarily from private backyards in Los Angeles, California (USA). New information Twelve new species of Megaselia (Diptera: Phoridae) are described: M. baileyae, M. friedrichae, M. gonzalezorum, M. joanneae, M. losangelensis, M. phyllissunae, M. pongsaiae, M. shatesae, M. stoakesi, M. studentorum, M. voluntariorum, M. wongae. PMID:27226746

  7. The Influence of Salmon Recolonization on Riparian Communities in the Cedar River, Washington, USA

    NASA Astrophysics Data System (ADS)

    Moravek, J.; Clipp, H.; Kiffney, P.

    2015-12-01

    Salmon are a valuable cultural and economic resource throughout the Pacific Northwest, but increasing human activity is degrading coastal ecosystems and threatening local salmon populations. Salmon conservation efforts often focus on habitat restoration, including the re-colonization of salmon into historically obstructed areas such as the Cedar River in Washington, USA. However, to assess the implications of salmon re-colonization on a landscape scale, it is critical to consider not only the river ecosystem but also the surrounding riparian habitat. Although prior studies suggest that salmon alter riparian food web dynamics, the riparian community on the Cedar River has not yet been characterized. To investigate possible connections between salmon and the riparian habitat, we surveyed riparian spider communities along a gradient of salmon inputs (g/m2). In 10-m transects along the banks of the river, we identified spiders and spider webs, collected prey from webs, and characterized nearby aquatic macroinvertebrate communities. We found that the density of aquatic macroinvertebrates, as well as the density of spider prey, both had significant positive relationships with salmon inputs, supporting the hypothesis that salmon provide energy and nutrients for both aquatic and riparian food webs. We also found that spider diversity significantly decreased with salmon inputs, potentially due to confounding factors such as stream gradient or vegetation structure. Although additional information is needed to fully understand this relationship, the significant connection between salmon inputs and spider diversity is compelling motivation for further studies regarding the link between aquatic and riparian systems on the Cedar River. Understanding the connections between salmon and the riparian community is critical to characterizing the landscape-scale implications of sustainable salmon management in the Pacific Northwest.

  8. Carbon, nitrogen, and phosphorus accumulation in floodplains of Atlantic Coastal Plain rivers, USA

    USGS Publications Warehouse

    Noe, G.B.; Hupp, C.R.

    2005-01-01

    Net nutrient accumulation rates were measured in riverine floodplains of the Atlantic Coastal Plain in Virginia, Maryland, and Delaware, USA. The floodplains were located in watersheds with different land use and included two sites on the Chickahominy River (urban), one site on the Mattaponi River (forested), and five sites on the Pocomoke River (agricultural). The Pocomoke River floodplains lie along reaches with natural hydrogeomorphology and on reaches with restricted flooding due to channelization and levees. A network of feldspar clay marker horizons was placed on the sediment surface of each floodplain site 3-6 years prior to sampling. Sediment cores were collected from the material deposited over the feldspar clay pads. This overlying sediment was separated from the clay layer and then dried, weighed, and analyzed for its total carbon (C), nitrogen (N), and phosphorus (P) content. Mean C accumulation rates ranged from 61 to 212 g??m-2??yr-1, N accumulation rates ranged from 3.5 to 13.4 g??m -2??yr-1, and P accumulation rates ranged from 0.2 to 4.1 g??m-2??yr-1 among the eight floodplains. Patterns of intersite variation in mineral sediment and P accumulation rates were similar to each other, as was variation in organic sediment and C and N accumulation rates. The greatest sediment and C, N, and P accumulation rates were observed on Chickahominy River floodplains downstream from the growing metropolitan area of Richmond, Virginia. Nutrient accumulation rates were lowest on Pocomoke River floodplains that have been hydraulically disconnected from the main channel by channelization and levees. Sediment P concentrations and P accumulation rates were much greater on the hydraulically connected floodplain immediately downstream of the limit of channelization and dense chicken agriculture of the upper Pocomoke River watershed. These findings indicate that (1) watershed land use has a large effect on sediment and nutrient retention in floodplains, and (2) limiting

  9. Clay mineral content of continental shelf and river sediments, southern California

    USGS Publications Warehouse

    Hein, James R.; Dowling, Jennifer S.

    2001-01-01

    This report contains data on the clay mineral content of 250 shelf surface-sediment samples from the California Continental Borderland (Tables 1, 2; Figures 1-7), 79 samples with depth in cores from Santa Monica Bay (Table 3; see Table 1 for surface sediment data for those same cores and for core locations), 24 suspended and 13 bottom sediment samples from rivers draining Southern California (Table 4), and six rock samples or composite rock samples from the Palos Verdes Headland (Table 4). This report is designed as the data repository and these data are discussed in a paper by Hein et al. (2001).

  10. A regional-scale study of chromium and nickel in soils of northern California, USA

    USGS Publications Warehouse

    Morrison, J.M.; Goldhaber, M.B.; Lee, L.; Holloway, J.M.; Wanty, R.B.; Wolf, R.E.; Ranville, J.F.

    2009-01-01

    A soil geochemical survey was conducted in a 27,000-km2 study area of northern California that includes the Sierra Nevada Mountains, the Sacramento Valley, and the northern Coast Range. The results show that soil geochemistry in the Sacramento Valley is controlled primarily by the transport and weathering of parent material from the Coast Range to the west and the Sierra Nevada to the east. Chemically and mineralogically distinctive ultramafic (UM) rocks (e.g. serpentinite) outcrop extensively in the Coast Range and Sierra Nevada. These rocks and the soils derived from them have elevated concentrations of Cr and Ni. Surface soil samples derived from UM rocks of the Sierra Nevada and Coast Range contain 1700-10,000 mg/kg Cr and 1300-3900 mg/kg Ni. Valley soils west of the Sacramento River contain 80-1420 mg/kg Cr and 65-224 mg/kg Ni, reflecting significant contributions from UM sources in the Coast Range. Valley soils on the east side contain 30-370 mg/kg Cr and 16-110 mg/kg Ni. Lower Cr and Ni concentrations on the east side of the valley are the result of greater dilution by granitic sources of the Sierra Nevada. Chromium occurs naturally in the Cr(III) and Cr(VI) oxidation states. Trivalent Cr is a non-toxic micronutrient, but Cr(VI) is a highly soluble toxin and carcinogen. X-ray diffraction and scanning electron microscopy of soils with an UM parent show Cr primarily occurs within chromite and other mixed-composition spinels (Al, Mg, Fe, Cr). Chromite contains Cr(III) and is highly refractory with respect to weathering. Comparison of a 4-acid digestion (HNO3, HCl, HF, HClO4), which only partially dissolves chromite, and total digestion by lithium metaborate (LiBO3) fusion, indicates a lower proportion of chromite-bound Cr in valley soils relative to UM source soils. Groundwater on the west side of the Sacramento Valley has particularly high concentrations of dissolved Cr ranging up to 50 ??g L-1 and averaging 16.4 ??g L-1. This suggests redistribution of Cr

  11. Long-term UHF RiverSonde river velocity observations at Castle Rock, Washington and Threemile Slough, California

    USGS Publications Warehouse

    Teague, C.C.; Barrick, D.E.; Lilleboe, P.M.; Cheng, R.T.; Ruhl, C.A.

    2005-01-01

    Long-term, non-contact river velocity measurements have been made using a UHF RiverSonde system for several months at each of two locations having quite different flow characteristics. Observations were made on the Cowlitz River at Castle Rock, Washington from October 2003 to June 2004, where the unidirectional flow of the river ranged from about 1.0 to 3.5 m/s. The radar velocity was highly correlated with the stage height which was continually measured by the U. S. Geological Survey. The profile of the along-channel velocity across the water channel also compared favorably with in-situ measurements performed by the Survey. The RiverSonde was moved to Threemile Slough, in central California, in September 2004 and has been operating there for several months. At Threemile Slough, which connects the Sacramento and San Joaquin Rivers, the flow is dominated by tidal effects and reverses direction four times per day, with a maximum speed of about 0.8 m/s in each direction. Water level and water velocity are continually measured by the Survey at the Threemile Slough site, with velocity recorded every 15 minutes from measurements made by an ultrasonic velocity meter (UVM). Over a period of several months, the radar and UVM velocity measurements have been highly correlated, with a coefficient of determination R2 of 0.976. ??2005 IEEE.

  12. In vivo bioassay-guided fractionation of marine sediment extracts from the Southern California Bight, USA, for estrogenic activity.

    PubMed

    Schlenk, Daniel; Sapozhnikova, Yelena; Irwin, Mary Ann; Xie, Lingtian; Hwang, Wendy; Reddy, Sharanya; Brownawell, Bruce J; Armstrong, Jeff; Kelly, Mike; Montagne, David E; Kolodziej, Edward P; Sedlak, David; Snyder, Shane

    2005-11-01

    The exposure and uptake of environmental estrogenic compounds have been reported in previous studies of demersal flatfish species in the central Southern California Bight (SCB), USA. The objective of this study was to evaluate the estrogenic or feminizing activity of marine sediments from the SCB by using in vivo vitellogenin (VTG) assays in male or juvenile fish. In 2003, sediments were collected near wastewater outfalls serving the counties of Los Angeles (LACSD) and Orange (OCSD), and the city of San Diego (SD), California, USA. Cultured male California halibut (CH; Paralichthys californicus) were either directly exposed to sediments for 7 d or treated with two intraperitoneal injections of sediment extract over 7 d. The 17beta-estradiol (E2) equivalent values ranged from 1 to 90 microg/kg with LACSD > SD > OCSD. Measurable concentrations of E2 were observed in all sediment extracts and ranged from 0.16 to 0.45 ng/g. Estrone (El) was only observed in sediments near the LACSD outfall (0.6 ng/g). Alkylphenols and alkylphenol ethoxylates were observed in all sediment samples, but were highest near the OCSD outfall, where concentrations of nonylphenol were 3,200 ng/g. Fractionation studies of the LACSD sediment extract collected in 2004 failed to demonstrate relationships between VTG expression and 62 analytes, including E2, which was observed in the whole extract (2.9 ng/g). Oxybenzone (1.6 ng/g) was identified in bioactive fractions as well as unknown compounds of relatively high polarity. These results indicate that estrogen receptor-based assays may underestimate environmental estrogenic activity and estrogenic compounds other than classic natural and xenoestrogens may contribute to estrogenic activity of sediments from the SCB. PMID:16398118

  13. Clumped isotope paleothermometry of the Mio-Pliocene freshwater Lake Mohave. Lower ancestral Colorado River, USA

    NASA Astrophysics Data System (ADS)

    Lang, K. A.; Huntington, K. W.

    2015-12-01

    The fluvio-lacustrine deposits of the Bouse Formation are an archive of ancestral Colorado River integration in the Late Miocene and Early Pliocene. In Mohave Valley along the California-Arizona-Nevada border, exposures of the Bouse Formation are observed ~400 m above the modern river elevation, which has been interpreted as evidence of tectonic uplift following a regionally extensive marine incursion and integration of the ancestral Colorado River by capture. However, recent investigations instead favor a "top-down" process of river integration by sequential infilling of freshwater lakes that does not require subsequent tectonic uplift. Accurate interpretation of the Bouse Formation's depositional environment is needed to test these models and ultimately, constrain the timing and mechanism of southwestern Colorado Plateau uplift. To further constrain interpretations of depositional environment, we present new clumped isotope analyses with major and trace element geochemistry and scanning electron microscopy of carbonate samples from the Bouse Formation in Mohave Valley. Here the Bouse Formation contains three distinct facies: basal marl and limestone overlain by thick beds of calcareous claystone interbedded with siltstone and sandstone and locally overlain by tufa. Bulk geochemistry of all facies is consistent with a similar freshwater source yet each facies is isotopically distinct, potentially indicating a strong influence of facies-specific fractionation processes. Carbonate formation temperatures measured in tufa samples are variable, suggesting multiple generations of calcite precipitation. Formation temperatures from basal marl and claystone samples are generally consistent with near-surface lake temperatures, broadly supporting a lacustrine depositional environment and "top-down" process of ancestral Colorado River integration. More broadly, our results quantify the variability in carbonate formation temperatures with different lacustrine facies and

  14. Mercury and selenium accumulation in the Colorado River food web, Grand Canyon, USA.

    PubMed

    Walters, David M; Rosi-Marshall, Emma; Kennedy, Theodore A; Cross, Wyatt F; Baxter, Colden V

    2015-10-01

    Mercury (Hg) and selenium (Se) biomagnify in aquatic food webs and are toxic to fish and wildlife. The authors measured Hg and Se in organic matter, invertebrates, and fishes in the Colorado River food web at sites spanning 387 river km downstream of Glen Canyon Dam (AZ, USA). Concentrations were relatively high among sites compared with other large rivers (mean wet wt for 6 fishes was 0.17-1.59 μg g(-1) Hg and 1.35-2.65 μg g(-1) Se), but consistent longitudinal patterns in Hg or Se concentrations relative to the dam were lacking. Mercury increased (slope = 0.147) with δ(15) N, a metric of trophic position, indicating biomagnification similar to that observed in other freshwater systems. Organisms regularly exceeded exposure risk thresholds for wildlife and humans (6-100% and 56-100% of samples for Hg and Se, respectfully, among risk thresholds). In the Colorado River, Grand Canyon, Hg and Se concentrations pose exposure risks for fish, wildlife, and humans, and the findings of the present study add to a growing body of evidence showing that remote ecosystems are vulnerable to long-range transport and subsequent bioaccumulation of contaminants. Management of exposure risks in Grand Canyon will remain a challenge, as sources and transport mechanisms of Hg and Se extend far beyond park boundaries. PMID:26287953

  15. Public support for ecosystem restoration in the Hudson River Valley, USA.

    PubMed

    Connelly, Nancy A; Knuth, Barbara A; Kay, David L

    2002-04-01

    We applied the Theory of Planned Behavior to help understand the relationships between environmental beliefs, support for ecosystem restoration actions, and willingness to pay (WTP) for restoration and protection goals in the Hudson River estuary, New York State, USA. We conducted a mail survey with 3,000 randomly-chosen local residents of the Hudson River estuary in the fall of 1999. As hypothesized, the broad ecosystem restoration goals of the Hudson River Estuary Action Plan were more strongly supported than the corresponding specific implementation actions. We found that beliefs and past behavior were better explanatory variables than sociodemographic characteristics for explaining people's support for ecosystem restoration actions and WTP for restoration and protection goals. Because ecosystem restoration goals appear to be more generally acceptable than specific restoration actions, proponents of restoration programs should not become complacent about the need for active public outreach and involvement even if initial restoration program discussions have been low in controversy. Efforts to assess and foster support for ecosystem restoration should be targeted toward audiences identified on the basis of beliefs and past behaviors rather than on sociodemographic characteristics. PMID:12071498

  16. Body morphology differs in wild juvenile Chinook salmon Oncorhynchus tshawytscha in the Willamette River, Oregon, USA

    USGS Publications Warehouse

    Billman, E.J.; Whitman, L.D.; Schroeder, R.K.; Sharpe, C.S.; Noakes, David L. G.; Schreck, Carl B.

    2014-01-01

    Body morphology of juvenile Chinook salmon Oncorhynchus tshawytscha in the upper Willamette River, Oregon, U.S.A., was analysed to determine if variation in body shape is correlated with migratory life-history tactics followed by juveniles. Body shape was compared between migrating juveniles that expressed different life-history tactics, i.e. autumn migrants and yearling smolts, and among parr sampled at three sites along a longitudinal river gradient. In the upper Willamette River, the expression of life-history tactics is associated with where juveniles rear in the basin with fish rearing in downstream locations generally completing ocean ward migrations earlier in life than fish rearing in upstream locations. The morphological differences that were apparent between autumn migrants and yearling smolts were similar to differences between parr rearing in downstream and upstream reaches, indicating that body morphology is correlated with life-history tactics. Autumn migrants and parr from downstream sampling sites had deeper bodies, shorter heads and deeper caudal peduncles compared with yearling smolts and parr from the upstream sampling site. This study did not distinguish between genetic and environmental effects on morphology; however, the results suggest that downstream movement of juveniles soon after emergence is associated with differentiation in morphology and with the expression of life-history variation.

  17. Mercury and selenium accumulation in the Colorado River food web, Grand Canyon, USA

    USGS Publications Warehouse

    Walters, David M.; E.J. Rosi-Marshall; Kennedy, Theodore A.; W.F. Cross; C.V. Baxter

    2015-01-01

    Mercury (Hg) and selenium (Se) biomagnify in aquatic food webs and are toxic to fish and wildlife. The authors measured Hg and Se in organic matter, invertebrates, and fishes in the Colorado River food web at sites spanning 387 river km downstream of Glen Canyon Dam (AZ, USA). Concentrations were relatively high among sites compared with other large rivers (mean wet wt for 6 fishes was 0.17–1.59 μg g–1 Hg and 1.35–2.65 μg g–1 Se), but consistent longitudinal patterns in Hg or Se concentrations relative to the dam were lacking. Mercury increased (slope = 0.147) with δ15N, a metric of trophic position, indicating biomagnification similar to that observed in other freshwater systems. Organisms regularly exceeded exposure risk thresholds for wildlife and humans (6–100% and 56–100% of samples for Hg and Se, respectfully, among risk thresholds). In the Colorado River, Grand Canyon, Hg and Se concentrations pose exposure risks for fish, wildlife, and humans, and the findings of the present study add to a growing body of evidence showing that remote ecosystems are vulnerable to long-range transport and subsequent bioaccumulation of contaminants. Management of exposure risks in Grand Canyon will remain a challenge, as sources and transport mechanisms of Hg and Se extend far beyond park boundaries. Environ Toxicol Chem2015;9999:1–10

  18. Quaternary eolian dunes in the Savannah River valley, Jasper County, South Carolina, USA

    NASA Astrophysics Data System (ADS)

    Swezey, Christopher S.; Schultz, Arthur P.; González, Wilma Alemán; Bernhardt, Christopher E.; Doar, William R.; Garrity, Christopher P.; Mahan, Shannon A.; McGeehin, John P.

    2013-09-01

    Sand hills in the Savannah River valley in Jasper County (South Carolina, USA) are interpreted as the remnants of parabolic eolian dunes composed of sand derived from the Savannah River and stabilized by vegetation under prevailing climate conditions. Optically stimulated luminescence ages reveal that most of the dunes were active ca. 40 to 19 ka ago, coincident with the last glacial maximum (LGM) through early deglaciation. Modern surface winds are not sufficient for sustained eolian sand transport. When the dunes were active, winds blew at velocities of at least 4 m/s from west to east, and some vegetation was present. The ratio of annual precipitation to potential evapotranspiration (P:PE) was less than the modern ratio of 1.23 and may have been < 0.30, caused by stronger winds (which would have resulted in greater evaporation) and/or reduced precipitation. The Savannah River dunes are part of a larger assemblage of eolian dunes that were active in the eastern United States during and immediately after the LGM, suggesting that eolian sediment behavior in this region has been controlled by regional forcing mechanisms during the Quaternary.

  19. Macroinvertebrate Responses to Constructed Riffles in the Cache River, Illinois, USA

    NASA Astrophysics Data System (ADS)

    Walther, Denise A.; Whiles, Matt R.

    2008-04-01

    Stream restoration practices are becoming increasingly common, but biological assessments of these improvements are still limited. Rock weirs, a type of constructed riffle, were implemented in the upper Cache River in southern Illinois, USA, in 2001 and 2003-2004 to control channel incision and protect high quality riparian wetlands as part of an extensive watershed-level restoration. Construction of the rock weirs provided an opportunity to examine biological responses to a common in-stream restoration technique. We compared macroinvertebrate assemblages on previously constructed rock weirs and newly constructed weirs to those on snags and scoured clay streambed, the two dominant substrates in the unrestored reaches of the river. We quantitatively sampled macroinvertebrates on these substrates on seven occasions during 2003 and 2004. Ephemeroptera, Plecoptera, and Trichoptera (EPT) biomass and aquatic insect biomass were significantly higher on rock weirs than the streambed for most sample periods. Snags supported intermediate EPT and aquatic insect biomass compared to rock weirs and the streambed. Nonmetric multidimensional scaling (NMDS) ordinations for 2003 and 2004 revealed distinct assemblage groups for rock weirs, snags, and the streambed. Analysis of similarity supported visual interpretation of NMDS plots. All pair-wise substrate comparisons differed significantly, except recently constructed weirs versus older weirs. Results indicate positive responses by macroinvertebrate assemblages to in-stream restoration in the Cache River. Moreover, these responses were not evident with more common measures of total density, biomass, and diversity.

  20. Fish assemblage response to a small dam removal in the Eightmile River system, Connecticut, USA.

    PubMed

    Poulos, Helen M; Miller, Kate E; Kraczkowski, Michelle L; Welchel, Adam W; Heineman, Ross; Chernoff, Barry

    2014-11-01

    We examined the effects of the Zemko Dam removal on the Eightmile River system in Salem, Connecticut, USA. The objective of this research was to quantify spatiotemporal variation in fish community composition in response to small dam removal. We sampled fish abundance over a 6-year period (2005-2010) to quantify changes in fish assemblages prior to dam removal, during drawdown, and for three years following dam removal. Fish population dynamics were examined above the dam, below the dam, and at two reference sites by indicator species analysis, mixed models, non-metric multidimensional scaling, and analysis of similarity. We observed significant shifts in fish relative abundance over time in response to dam removal. Changes in fish species composition were variable, and they occurred within 1 year of drawdown. A complete shift from lentic to lotic fishes failed to occur within 3 years after the dam was removed. However, we did observe increases in fluvial and transition (i.e., pool head, pool tail, or run) specialist fishes both upstream and downstream from the former dam site. Our results demonstrate the importance of dam removal for restoring river connectivity for fish movement. While the long-term effects of dam removal remain uncertain, we conclude that dam removals can have positive benefits on fish assemblages by enhancing river connectivity and fluvial habitat availability. PMID:25022888

  1. A spatial model of white sturgeon rearing habitat in the lower Columbia River, USA

    USGS Publications Warehouse

    Hatten, J.R.; Parsley, M.J.

    2009-01-01

    Concerns over the potential effects of in-water placement of dredged materials prompted us to develop a GIS-based model that characterizes in a spatially explicit manner white sturgeon Acipenser transmontanus rearing habitat in the lower Columbia River, USA. The spatial model was developed using water depth, riverbed slope and roughness, fish positions collected in 2002, and Mahalanobis distance (D2). We created a habitat suitability map by identifying a Mahalanobis distance under which >50% of white sturgeon locations occurred in 2002 (i.e., high-probability habitat). White sturgeon preferred relatively moderate to high water depths, and low to moderate riverbed slope and roughness values. The eigenvectors indicated that riverbed slope and roughness were slightly more important than water depth, but all three variables were important. We estimated the impacts that fill might have on sturgeon habitat by simulating the addition of fill to the thalweg, in 3-m increments, and recomputing Mahalanobis distances. Channel filling simulations revealed that up to 9 m of fill would have little impact on high-probability habitat, but 12 and 15 m of fill resulted in habitat declines of ???12% and ???45%, respectively. This is the first spatially explicit predictive model of white sturgeon rearing habitat in the lower Columbia River, and the first to quantitatively predict the impacts of dredging operations on sturgeon habitat. Future research should consider whether water velocity improves the accuracy and specificity of the model, and to assess its applicability to other areas in the Columbia River.

  2. Accounting for Consumptive Use of Lower Colorado River Water in Arizona, California, Nevada, and Utah

    USGS Publications Warehouse

    Owen-Joyce, Sandra J.; Wilson, Richard P.

    1994-01-01

    In the Colorado River valley between the east end of Lake Mead and the international boundary with Mexico (see figure), the river is the principal source of water for agricultural, domestic, municipal, industrial, hydroelectric-power generation, and recreational purposes. Water is stored in surface reservoirs and in the river aquifer---permeable sediments and sedimentary rocks that fill the lower Colorado River valley and adjacent tributary valleys. The hydraulic connection between the river and the river aquifer, overbank flow prior to building of the dams, and infiltration as the reservoirs filled allowed the sediments and sedimentary rocks to become saturated with water from the river. Ratios of isotopes of hydrogen and oxygen in water from wells indicate that most of the water in the river aquifer beneath the flood plain and in many places beneath the adjacent alluvial slopes originated from the river. The water table in the river aquifer extends from the river, beneath the flood plain, and under the alluvial slopes until it intersects bedrock. Precipitation in the surrounding mountains and inflow from tributary valleys also contribute small quantities of water to the river aquifer. Consumptive use of river water in the valley results from evapotranspiration by vegetation (crops and phreatophytes) on the flood plain, pumpage from wells to meet domestic and municipal needs, and pumpage from the river for export to areas in California, Arizona, and Nevada outside of the river valley. Most crops are grown on the flood plain; in a few areas, land on the adjacent terraces has been cultivated. Crops were grown on about 70 percent of the total vegetated area in 1984. Phreatophytes---natural vegetation that obtains water from the river aquifer---covered the remaining vegetated areas on the uncultivated flood plain. Most of the water used for irrigation is diverted or pumped directly from the river and reservoirs. Most of the water used for domestic and municipal

  3. Diazinon and chlorpyrifos loads in the San Joaquin River basin, California, January and February 2000

    USGS Publications Warehouse

    Kratzer, Charles R.; Zamora, Celia; Knifong, Donna L.

    2002-01-01

    The application of diazinon and chlorpyrifos on dormant orchards in 2000 in the San Joaquin River Basin was less than 21 percent of application in 1993 and 1994. A total of 13 sites were sampled weekly during nonstorm periods and more frequently during two storm periods. The sites included five major river and eight minor tributary sites. The highest concentrations of diazinon and chlorpyrifos occurred during the storm periods. Four samples from major river sites (Tuolumne River and two San Joaquin River sites) had diazinon concentrations greater than 0.08 microgram per liter, the concentration being considered by the state of California as its criterion maximum concentration for the protection of aquatic habitat. One sample from a major river site (San Joaquin River) exceeded the equivalent State guideline of 0.02 microgram per liter for chlorpyrifos. At the eight minor tributary sites, 24 samples exceeded the diazinon guideline and four samples exceeded the chlorpyrifos guideline. The total diazinon load in the San Joaquin River near Vernalis during January and February 2000 was 19.6 pounds active ingredient; of this, 8.17 pounds active ingredient was transported during two storms. In 1994, 27.4 pounds active ingredient was transported during two storms. The total chlorpyrifos load in the San Joaquin River near Vernalis during January and February 2000 was 5.68 pounds active ingredient; of this, 2.17 pounds active ingredient was transported during the two storms. During the frequently sampled February 2000 storm, the main sources of diazinon in the San Joaquin River Basin were the San Joaquin River near Stevinson Basin (25 percent), Tuolumne River Basin (14 percent), and the Stanislaus River Basin (10 percent). The main sources of chlorpyrifos in the San Joaquin River Basin were the San Joaquin River near Stevinson Basin (17 percent), Tuolumne River Basin (13 percent), and the Merced River Basin (11 percent). The total January and February diazinon load in the

  4. Effects of bank storage and well pumping on base flow, Carmel River, Monterey County, California

    NASA Astrophysics Data System (ADS)

    Kondolf, G. M.; Maloney, L. M.; Williams, J. G.

    1987-06-01

    Bank storage contributions to base flow may be important on alluvial rivers with highly permeable bank materials, such as the lower Carmel River, Monterey County, California. The recharge phase of bank storage occurs during flood stage in the river when a hydraulic gradient exists from the river into the banks. In general, discharge from bank storage is most important on the recession limb of individual floods, with most stored water typically being discharged within 2-3 flood periods. As the river stage continues to fall, a hydraulic gradient from the banks to the river will be maintained and stored water will drain from the banks. On the Carmel River, the seasonal recession limb provides conditions of a gradually declining stage over several months. In 1982, a moderately wet year, bank storage contributions were detected two months after the last peak flow of the winter rainy season, during a period of critical importance to steelhead trout and probably to riparian vegetation. However, in 1983, an extremely wet year, bank storage was undetectable two months after the season's last peak flow, probably because the sustained base flow from the upper basin overwhelmed the more transient bank storage contribution. Groundwater withdrawal from the alluvial aquifer locally lowered the water table so that streamflow was influent to the banks in the reach of major pumping wells. This effect was striking in its persistence, whether the Carmel River was gaining or losing overall in its alluvial reach. Pumping rates were roughly comparable to flow losses across the well field.

  5. Development of curves that represent trends in selected hydraulic variables for the Sacramento River at Butte City, California

    USGS Publications Warehouse

    Burkham, D.E.; Guay, Richard

    1981-01-01

    Streamflow records for the Sacramento River at Butte City, California, are used to develop curves that represent trends in discharges, stages, and velocities that are equaled or exceeded 95, 90, 75, 50, and 25 percent of the time. (USGS)

  6. Sediment Dynamics and Coastal Response to Large-Scale Dam Removal: Elwha River, USA

    NASA Astrophysics Data System (ADS)

    Gelfenbaum, G. R.; Stevens, A. W.; Miller, I. M.; Warrick, J. A.; Ritchie, A. C.

    2013-12-01

    Two dams on the Elwha River, Washington State, USA trapped over 25 million m3 of mud, sand, and gravel since the early 1900s and contributed to erosion of the delta protruding into the Strait of Juan de Fuca. The removal of the Elwha and Glines Canyon dams, initiated in September 2011, is providing an unprecedented opportunity to examine the geomorphic response of a coastal delta to massive changes in river sediment supply. Observations once or twice a year prior to and during dam removal of nearshore bathymetry, collected using personal watercraft equipped with RTK GPS and single-beam echosounders and beach topography, collected with RTK GPS mounted on backpacks provide a sequence of continuous DEM surfaces to quantify geomorphic change. Bed sediments are sampled by grab sampler in water depths between -9 and -1 m around the delta, and by hand and a 'cobble-cam' digital camera during low tide on sub-aerial beaches. An approximately monthly series of low altitude, high-resolution vertical aerial ortho-images qualitatively document sub-aerial changes in coastal landforms. Comparison of the March 2013 survey with surveys conducted prior to dam removal shows large changes in the morphology of the river mouth and submarine delta. Sediment accumulation was widespread throughout the survey area but was concentrated primarily in two distinct areas. The largest area of deposition was located adjacent to the river mouth and covered approximately 368,000 m2 with an average thickness of 3.1 m and a maximum of 8 m. A secondary area of deposition was observed to the east of the river mouth and covered 115,600 m2 with a mean thickness of 0.69 m and a maximum of 1.8 m. Net accumulation within the study area totals roughly 1,300,000 m3 since the removal of the two dams began in 2011. Surface sediment of the primary deposit adjacent to the river mouth is coarser (coarse to medium sand) than the secondary deposit to the east (medium to fine sand). Numerical model simulations of

  7. Milankovitch Forcing in Equatorial, Late Triassic Pangea: (Deep River; Dan River, and Richmond Basins, Southeastern USA)

    NASA Astrophysics Data System (ADS)

    Olsen, P. E.; Kent, D. V.; Letourneau, P. M.

    2003-12-01

    The Milankovitch character of lake level fluctuations in the tropics of central Pangea has been well established since the pioneering work of Van Houten in the 1960's (1) that laid the foundation for quantitative analysis of core and outcrops in the 1990's (2,3). In the region from about 3° to 10° N latitude giant rift lakes fluctuated to the classic Milankovitch frequencies of precessional forcing of ~20, 96, 128, and 404 ky, as well as the less well known 1.75 and 3.5 m.y. cycles. The latter are the Triassic values for the periods of g4-g3 of eccentricity related precessional forcing and the secular resonance, theta (2(g4- g3) - (s4-s3)), of precessional and obliquity related forcing. We attribute the forcing of lake depth largely to modulation of the strength of tropical convergence. Late Triassic rifts located from 0° to 3° N latitude show similar patterns, except with a strong tendency towards a doubling of the climatic precessional frequency and a lack of evaporites as previously reported from the Dan River basin (4,5,6). Here we report on new analyses of coal-bearing cores and drill holes from the Deep River, Dan River, and Richmond basin of older Late Triassic lacustrine strata that reinforce this pattern but show that the doubling of the precessional frequency is not ubiquitous at the equator and also show that very strong climatic transitions appear related to the 1.75 and 3.5 m.y. cycles juxtaposing coals and caliches in vertical sequence and sometimes coinciding with major faunal and floral transitions. (1) Van Houten FB. 1964. Kansas Geol. Surv. Bull. 169:497. (2) Olsen PE & Kent DV. 1996. Palaeogeo. Palaeoclim. Palaeoecol. 122:1-26. (3) Olsen PE & Kent DV. 1999. Phil. Trans. Roy. Soc. Lond. (A) 357:1761-1787. (4) Olsen PE & Kent DV.1996. Eos, Trans., AGU 77(46), Suppl.:301. (5) Olsen PE. 1997. Ann. Rev. Earth Planet. Sci. 25:337-401. (6) Olsen PE & Kent DV. 2000. in Bachmann G. and Lerche I. (eds.), Epicontinental Triassic, Vol. 3, Zent. Geol

  8. 77 FR 23658 - Six Rivers National Forest, Gasquet Ranger District, California, The Smith River National...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-20

    ... Smith River National Recreation Area Restoration and Motorized Travel Management Project AGENCY: Forest.... This project responds to the Travel Management Rule, Subpart B (36 CFR 212.52), which requires the...-pacificsouthwest-six-rivers@fs.fed.us . Please insure that ``Smith River NRA Restoration and Motorized...

  9. How is Physical Depositional Setting Related to Silica Chemistry in the Platte River, USA?

    NASA Astrophysics Data System (ADS)

    Van Orsdel, Z. R.; Mohr, R. C.; Ford, E.; Wagner, Z.; Kettenring, K. M.; Triplett, L.

    2013-12-01

    Beginning in 2003, a non-native subspecies of Phragmites australis, a wetland grass, invaded the Platte River in Nebraska, USA. The plants' dense root and rhizome structures caused channel narrowing and increased deposition of fine sediment. We hypothesized that a significant proportion of the fine sediment was comprised of biogenic silica particles including terrestrial plant phytoliths. In this study, we determined a relationship between particle size and biogenic silica content in Platte River sediments to help characterize when and where silica is sequestered in the riparian areas of rivers. Historically a wide, braided, largely unvegetated sand-bed river, the Platte has undergone several major changes since the early 1900s. The main anthropogenic impact on the Platte has been a ~75 percent reduction in flow, leading to channel narrowing and more vegetation occupying riparian areas. Phragmites is particularly effective at building islands and extending river banks because its roots add cohesion to sediment. We suspect that the presence of Phragmites in the Platte River has resulted in a reduction of bioavailable silica (dissolved and particulate amorphous particles) being exported to the downstream receiving waters, ultimately including the Gulf of Mexico. We want to better understand silica sequestration in riverine environments, because silicon is often a limiting nutrient for some phytoplankton (e.g., diatoms and radiolaria) in coastal oceans. In the Platte, lower water levels and increased vegetation density cause reduced flow velocity, allowing more silica particles to settle out of suspension. We hypothesized that silica content in the riparian sediments of the Platte River negatively correlate with particle size, and that the non-native subspecies of Phragmites uses more silica than the native variety. In order to quantify the effect Phragmites is having on the Platte's silica load, plant and sediment samples were prepared using a timed NaOH digestion

  10. Habitat requirements of the endangered California freshwater shrimp (Syncaris pacifica) in lagunitas and Olema creeks, Marin County, California, USA

    USGS Publications Warehouse

    Martin, Barbara A.; Saiki, Michael K.; Fong, Darren

    2009-01-01

    This study was conducted to better understand the habitat requirements and environmental limiting factors of Syncaris pacifica, the California freshwater shrimp. This federally listed endangered species is native to perennial lowland streams in a few watersheds in northern California. Field sampling occurred in Lagunitas and Olema creeks at seasonal intervals from February 2003 to November 2004. Ten glides, five pools, and five riffles served as fixed sampling reaches, with eight glides, four pools, and four riffles located in Lagunitas Creek and the remainder in Olema Creek. A total of 1773 S. pacifica was counted during this study, all of which were captured along vegetated banks in Lagunitas Creek. Syncaris pacifica was most numerous in glides (64), then in pools (31), and lastly in riffles (5). According to logistic regression analysis, S. pacifica was mostly associated with submerged portions of streambank vegetation (especially overhanging vegetation such as ferns and blackberries, emergent vegetation such as sedge and brooklime, and fine roots associated with water hemlock, willow, sedge, and blackberries) along with low water current velocity and a sandy substrate. These seemingly favorable habitat conditions for S. pacifica were present in glides and pools in Lagunitas Creek, but not in Olema Creek. ?? 2009 The Crustacean Society.

  11. Impacts of Migratory Sandhill Cranes (Grus canadensis) on Microbial Water Quality in the Central Platte River, Nebraska, USA

    EPA Science Inventory

    Wild birds have been shown to be significant sources of numerous types of pathogens that are relevant to humans and agriculture. The presence of large numbers of migratory birds in such a sensitive and important ecosystem as the Platte River in central Nebraska, USA, could potent...

  12. CLASSIFICATION OF HIGH SPATIAL RESOLUTION, HYPERSPECTRAL REMOTE SENSING IMAGERY OF THE LITTLE MIAMI RIVER WATERSHED IN SOUTHWEST OHIO, USA (FINAL)

    EPA Science Inventory

    The document and associated land use/land cover (LULC) coverage, entitled Classification of High Spatial Resolution, Hyperspectral Remote Sensing Imagery of the Little Miami River Watershed in Southwest Ohio, USA, is the result of a collaborative effort among an interdisci...

  13. COMPONENTS OF SURFACE AND SUBSURFACE CONNECTIVITY IN A LARGE OREGON (USA) RIVER--WHAT CAN BE RESTORED?

    EPA Science Inventory

    We conducted research on the Willamette River in western Oregon (USA) to determine the ecological functions of off-channel habitats (OCH). OCHs have declined in our 70 km study reach of the active floodplain since European settlement. Surface and subsurface connectivity between...

  14. Monitoring of Water Quality Dynamics in Fresno River and Hensley Lake, California*

    NASA Astrophysics Data System (ADS)

    Wang, Z.; Blumenshine, S.; Wright, A.; McClanahan, M.; Holcomb, R. E.; Sartono, O.

    2004-12-01

    The Fresno River is located near the geographical center of California and is the first major tributary east of the San Joaquin River. Hensley Lake was created by the construction of Hidden Dam on the Fresno River for flood control, irrigation, resource management, and recreation. The reservoir has a storage capacity of 90,000 acre feet (110 million m3) and a water surface area of about 1,500 acres (6 km2). In recent years, algae blooms appeared in the lake, causing public concerns over continued beneficial uses of Fresno River and Hensley Lake. This monitoring and simulation project was conducted to identify the major nutrient sources and nutrient and algae dynamics in the watershed and reservoir. A GIS-aided BASINS model was set up for basin scale water quality simulation in the future. Historical data analysis and field sampling of physical, chemical and biological parameters of the River and Lake waters indicated that: (1) The annual contribution of river water to the lake has significantly decreased after the year 2000 (reasons to be investigated). This caused a decrease in water storage in the reservoir likely lead to eutrophic and even hypereutrophic conditions in the lake; (2) The dissolved oxygen in the river is at a critical (near minimum) level for potential beneficial uses. Oxygen levels quickly declined with depth in the lake during summer, far below the minimum concentrations for warm water systems as determined by California Water Quality Standards (5.0mg/L). Oxygen deficit is caused not only by not having enough light through surface water but also oxygen consumption by surface algae and their decomposers in the deep water through respiration; (3) Nutrient concentrations in the watershed were always lower than the lake site closest to the river inflow, strongly suggesting that the river water is diluting the lake; and (4) High bacteria (total Coliform and E. Coli) numbers prevailed in the middle and downstream reaches of the river, indicating that

  15. Molecular Diversity of Trypanosoma cruzi Detected in the Vector Triatoma protracta from California, USA

    PubMed Central

    Shender, Lisa A.; Lewis, Michael D.; Rejmanek, Daniel; Mazet, Jonna A. K.

    2016-01-01

    Background Trypanosoma cruzi, causative agent of Chagas disease in humans and dogs, is a vector-borne zoonotic protozoan parasite that can cause fatal cardiac disease. While recognized as the most economically important parasitic infection in Latin America, the incidence of Chagas disease in the United States of America (US) may be underreported and even increasing. The extensive genetic diversity of T. cruzi in Latin America is well-documented and likely influences disease progression, severity and treatment efficacy; however, little is known regarding T. cruzi strains endemic to the US. It is therefore important to expand our knowledge on US T. cruzi strains, to improve upon the recognition of and response to locally acquired infections. Methodology/Principle Findings We conducted a study of T. cruzi molecular diversity in California, augmenting sparse genetic data from southern California and for the first time investigating genetic sequences from northern California. The vector Triatoma protracta was collected from southern (Escondido and Los Angeles) and northern (Vallecito) California regions. Samples were initially screened via sensitive nuclear repetitive DNA and kinetoplast minicircle DNA PCR assays, yielding an overall prevalence of approximately 28% and 55% for southern and northern California regions, respectively. Positive samples were further processed to identify discrete typing units (DTUs), revealing both TcI and TcIV lineages in southern California, but only TcI in northern California. Phylogenetic analyses (targeting COII-ND1, TR and RB19 genes) were performed on a subset of positive samples to compare Californian T. cruzi samples to strains from other US regions and Latin America. Results indicated that within the TcI DTU, California sequences were similar to those from the southeastern US, as well as to several isolates from Latin America responsible for causing Chagas disease in humans. Conclusions/Significance Triatoma protracta populations

  16. Earthquake-induced sediment failures on a 0.25o slope, Klamath River delta, California.

    USGS Publications Warehouse

    Field, M.E.; Gardner, J.V.; Jennings, A.E.; Edwards, B.D.

    1982-01-01

    On Nov. 8, 1980, a major earthquake (magnitude 6.5-7.2) occurred 60 km off the coast of N California. A survey of the area using high-resolution seismic-reflection and side-scan sonar equipment revealed the presence of extensive sediment failure and flows in a zone about 1 km wide and 20 km long that trends parallel to the shelf on the very gently sloping (less than 0.25o) Klamath River delta.-from Authors

  17. Colorado River Floods, Droughts, and Shrimp Fishing in the Upper Gulf of California, Mexico

    NASA Astrophysics Data System (ADS)

    All, John D.

    2006-01-01

    Accurate procedures that measure hydrologic variability would have great value for evaluating ecosystem impacts of upstream water use in the Colorado River Basin. Many local extractive income-based stakeholders rely directly or indirectly on ecosystem health and are adversely affected when the river does not flow. This study focuses on the impact of little or no Colorado River flow on the Mexican shrimp industry. Although there have been complaints that U.S. diversions of Colorado River flow have greatly impaired the shrimp fishery, this research demonstrates that freshwater rarely reaches the Gulf even during times of flooding, and that other factors such as overfishing may influence the instability of shrimp populations. Advanced very-high-resolution radiometer (AVHRR) satellite imagery was used to assess water volumes diverted away from the channel of the Colorado River and ultimately the Gulf of California during flooding periods. Analysis of data demonstrated that little freshwater actually reaches the Gulf even during floods because of its diversion into a large dry lake bed basin known as Laguna Salada. Fuller use of the Colorado River throughout its entire course to the sea is possible and could benefit a large cohort of users without catastrophic habitat destruction in delta ecosystems. Reconstruction of a natural earthen berm, as proposed by Ducks Unlimited, would maximize the use of floodwaters for ecosystem benefits. These findings have profound implications for local economic activities dependent on hydrologic resources in the Colorado River Delta and Upper Gulf.

  18. Colorado river floods, droughts, and shrimp fishing in the upper gulf of California, Mexico.

    PubMed

    All, John D

    2006-01-01

    Accurate procedures that measure hydrologic variability would have great value for evaluating ecosystem impacts of upstream water use in the Colorado River Basin. Many local extractive income-based stakeholders rely directly or indirectly on ecosystem health and are adversely affected when the river does not flow. This study focuses on the impact of little or no Colorado River flow on the Mexican shrimp industry. Although there have been complaints that U.S. diversions of Colorado River flow have greatly impaired the shrimp fishery, this research demonstrates that freshwater rarely reaches the Gulf even during times of flooding, and that other factors such as overfishing may influence the instability of shrimp populations. Advanced very-high-resolution radiometer (AVHRR) satellite imagery was used to assess water volumes diverted away from the channel of the Colorado River and ultimately the Gulf of California during flooding periods. Analysis of data demonstrated that little freshwater actually reaches the Gulf even during floods because of its diversion into a large dry lake bed basin known as Laguna Salada. Fuller use of the Colorado River throughout its entire course to the sea is possible and could benefit a large cohort of users without catastrophic habitat destruction in delta ecosystems. Reconstruction of a natural earthen berm, as proposed by Ducks Unlimited, would maximize the use of floodwaters for ecosystem benefits. These findings have profound implications for local economic activities dependent on hydrologic resources in the Colorado River Delta and Upper Gulf. PMID:16362490

  19. Current Status of Western Yellow-Billed Cuckoo along the Sacramento and Feather Rivers, California.

    PubMed

    Dettling, Mark D; Seavy, Nathaniel E; Howell, Christine A; Gardali, Thomas

    2015-01-01

    To evaluate the current status of the western population of the Yellow-billed Cuckoo (Coccyzus americanus) along the Sacramento and Feather rivers in California's Sacramento Valley, we conducted extensive call playback surveys in 2012 and 2013. We also quantified the amount and distribution of potential habitat. Our survey transects were randomly located and spatially balanced to sample representative areas of the potential habitat. We estimated that the total area of potential habitat was 8,134 ha along the Sacramento River and 2,052 ha along the Feather River, for a total of 10,186 ha. Large-scale restoration efforts have created potential habitat along both of these rivers. Despite this increase in the amount of habitat, the number of cuckoos we detected was extremely low. There were 8 detection occasions in 2012 and 10 occasions in 2013 on the Sacramento River, in both restored and remnant habitat. We had no detections on the Feather River in either year. We compared our results to 10 historic studies from as far back as 1972 and found that the Yellow-billed Cuckoo had unprecedentedly low numbers in 2010, 2012, and 2013. The current limiting factor for the Yellow-billed Cuckoo in the Sacramento Valley is likely not the amount of appropriate vegetation, as restoration has created more habitat over the last 30 years. Reasons for the cuckoo decline on the Sacramento and Feather rivers are unclear. PMID:25915801

  20. INDOOR AND OUTDOOR ULTRA-FINE PARTICLE COUNTS IN A 1999 TWO-SEASON FRESNO, CALIFORNIA, USA ACUTE CARDIAC PANEL STUDY

    EPA Science Inventory

    Indoor and Outdoor Ultrafine Particle Counts in a 1999 Two-Season Fresno, California, USA Acute Cardiac Panel Study.

    John Creason, Debra Walsh, Lucas Neas, US Environmental Protection Agency, Office of Research and Development, National Health and Environmental Effects R...

  1. Dissolved pesticide data for the San Joaquin River at Vernalis and the Sacramento River at Sacramento, California, 1991-94

    USGS Publications Warehouse

    MacCoy, Dorene E.; Crepeau, Kathryn L.; Kuivila, Kathryn M.

    1995-01-01

    Water samples were collected from sites on the San Joaquin and Sacramento Rivers, California and were analyzed for dissolved organic pesticides. This data collection and analysis are a part of an ongoing project by the U.S. Geological Survey Toxic Contaminants Hydrology program to determine the fate and transport of organic pesticides that enter the San Francisco Bay Estuary. Concentrations of selected pesticides were measured in filtered water samples using solid-phase extraction and gas chromatograph-mass spectrometry at the U.S. Geological Survey organic chemistry laboratory in Sacramento.

  2. Isolation of Onchocerca lupi in Dogs and Black Flies, California, USA

    PubMed Central

    Hassan, Hassan K.; Bolcen, Shanna; Kubofcik, Joseph; Nutman, Thomas B.; Eberhard, Mark L.; Middleton, Kelly; Wekesa, Joseph Wakoli; Ruedas, Gimena; Nelson, Kimberly J.; Dubielzig, Richard; De Lombaert, Melissa; Silverman, Bruce; Schorling, Jamie J.; Adler, Peter H.; Beeler, Emily S.

    2015-01-01

    In southern California, ocular infections caused by Onchocerca lupi were diagnosed in 3 dogs (1 in 2006, 2 in 2012). The infectious agent was confirmed through morphologic analysis of fixed parasites in tissues and by PCR and sequencing of amplicons derived from 2 mitochondrially encoded genes and 1 nuclear-encoded gene. A nested PCR based on the sequence of the cytochrome oxidase subunit 1 gene of the parasite was developed and used to screen Simulium black flies collected from southern California for O. lupi DNA. Six (2.8%; 95% CI 0.6%–5.0%) of 213 black flies contained O. lupi DNA. Partial mitochondrial16S rRNA gene sequences from the infected flies matched sequences derived from black fly larvae cytotaxonomically identified as Simulium tribulatum. These data implicate S. tribulatum flies as a putative vector for O. lupi in southern California. PMID:25897954

  3. Valve morphology and systematic position of Navicula walkeri (Bacillariophyceae), a diatom endemic to Oregon and California (USA)

    USGS Publications Warehouse

    Kociolek, J.P.; Spaulding, S.A.; Kingston, J.C.

    1998-01-01

    Variation in valve size and ultrastructure is documented for Navicula walkeri, a freshwater diatom species endemic to Oregon and central California (USA). In LM, this large diatom has longitudinal lines on either side of the axial area, as well as lineolate striae. External proximal raphe ends recurve toward the same side as the deflected distal ends. A large central nodule and bulbous areas at the terminus of each raphe branch are visible internally. The edges of an axial plate form the image of longitudinal lines. The suite of features present in N. walkeri suggests it is part of Navicula sensu stricto but occupies an isolated position within the group. Navicula sensu stricto is not an entirely homogeneous assemblage, and further refinements of the systematic affinities of its members may be warranted.

  4. Health Care–Associated Infection Outbreak Investigations in Outpatient Settings, Los Angeles County, California, USA, 2000−2012

    PubMed Central

    Coelho, Laura; Bancroft, Elizabeth; Terashita, Dawn

    2015-01-01

    Health care services are increasingly delivered in outpatient settings. However, infection control oversight in outpatient settings to ensure patient safety has not improved and literature quantifying reported health care–associated infection outbreaks in outpatient settings is scarce. The objective of this analysis was to characterize investigations of suspected and confirmed outbreaks in outpatient settings in Los Angeles County, California, USA, reported during 2000–2012, by using internal logs; publications; records; and correspondence of outbreak investigations by characteristics of the setting, number, and type of infection control breaches found during investigations, outcomes of cases, and public health responses. Twenty-eight investigations met the inclusion criteria. Investigations occurred frequently, in diverse settings, and required substantial public health resources. Most outpatient settings investigated had >1 infection control breach. Lapses in infection control were suspected to be the outbreak source for 16 of the reviewed investigations. PMID:26196293

  5. Kinetics of Extracellular Peptidases in Sediments of the White Oak River, NC, USA

    NASA Astrophysics Data System (ADS)

    Steen, A. D.; Kevorkian, R. T.; Alperin, M. J.; Lloyd, K. G.

    2013-12-01

    Recent molecular work has shed light on the mechanisms underlying organoheterotrophy in the marine subsurface, including production of extracellular peptidases by deeply-branching Archaea. Here we present measurements of the potential activity (Vmax) and half-saturation constants (Km) for six extracellular peptidase substrates in sediments from 0 to 83 cm deep in the White Oak River estuary, NC, USA. Potential activities at 83 cm were on average 12% of the values at the surface, but because surface Vmax values were several orders of magnitude greater than comparable values from surface seawater, the deep activities were still substantial. Km values did not display a clear trend with depth. Activities consistent with leucyl aminopeptidase were higher than any other extracellular peptidase, but there was no clear division in activities between endopeptidases (which cleave bonds in the interior of proteins) versus aminopeptidases (which cleave N-terminal amino acids). Competitive inhibition experiments will reveal the extent to which the activities we measured reflect the distinct enzymes. We will also present model-based estimates of organic carbon mineralization rates based on methane and sulfate profiles in order to assess the relative importance of extracellular peptidases as a means to acquire organic carbon in the subsurface. Saturation curves for 5 peptidase substrates at the surface and 83 cm in the White Oak River.

  6. An Investigation Into the Ecohydrology of Riparian Wetlands Along the Gila River, NM, USA

    NASA Astrophysics Data System (ADS)

    Samson, J.; Stone, M. C.

    2013-12-01

    The dynamism of the Gila River, in southwestern New Mexico, USA, has resulted in the creation of a topographically diverse floodplain that supports an array of riparian wetlands. The purpose of this study is to investigate the ecohydrologic and ecohydraulic processes of two of these wetlands, in order to predict their potential response to anthropogenic or natural changes in hydrology. One represents a natural wetland and the other a wetland that exists only as a result of an anthropogenic modification to the river system. A network of 30 wells and 2 weather stations were installed in early 2013 to provide a high resolution of data on surface water and ground water hydrologic conditions. Phreatic surface contour maps were produced to aid in the visualization of sub-surface gradients. Based on these results, an electrical resistivity investigation was conducted to identify paleoflow channels as well as depth to bedrock and other potential areas of interest. These data formed the development of three dimensional ModFlow models that were used to investigate potential future stream flow scenarios on wetland hydrology. The model outputs are being used in tandem with the results of quarterly ecological surveys on vegetation, algae, benthic, and bird communities, to make predictions of potential changes in community structure and function.

  7. Revision of the biostratigraphy of the Chatham Group (Upper Triassic), Deep River basin, North Carolina, USA

    USGS Publications Warehouse

    Litwin, R.J.; Ash, S.R.

    1993-01-01

    Paleontological evidence from the Upper Triassic Chatham Group in the three subbasins of the Deep River basin (North Carolina, USA) supports a significant revision of the ages assigned to most of this non-marine continental sedimentary sequence. This study confirms an early(?) or mid-Carnian age in the Sanford subbasin for the base of the Pekin Formation, the lowest unit of the Chatham Group. However, diagnostic late Carnian palynomorphs have been recovered from coals in the lower part of the Cumnock Formation in the Sanford subbasin, and from a sample of the Cumnock Formation equivalent in the Wadesboro subbasin. Plant megafossils and fossil verebrates from rocks in the Sanford subbasin also support a late Carnian age for the Cumnock Formation and its equivalents. The overlying Sanford Formation, which has not yet been dated paleontologically, probably includes beds of Norian age, as over 1000 m of strata may be present between the Cumnock Formation coals (dated here as late Carnian) and the top of the Sanford Formation. This chronostratigraphic interval appears similar to, but slightly longer than, that preserved in the Dan River-Danville and Davie County basins 100 km to the northwest. Our evidence, therefore, indicates that the Chatham Group was deposited over a much longer time interval [early(?) to mid-Carnian through early Norian] than previously was believed. ?? 1993.

  8. Nephrolithiasis in free-ranging North American river otter (Lontra canadensis) in North Carolina, USA.

    PubMed

    Niemuth, Jennifer N; Sanders, Charles W; Mooney, Charles B; Olfenbuttel, Colleen; DePerno, Christopher S; Stoskopf, Michael K

    2014-03-01

    The North American river otter (Lontra canadensis) serves as an indicator species for environmental monitoring, is prized as a valuable furbearer, and is a popular display animal in zoologic collections. Nephrolithiasis has been reported as a frequent problem in other free-ranging and captive otter species but is rarely reported in North American river otters. In this study, we compared the prevalence of nephrolithiasis diagnosed using routine gross pathologic examination techniques with the use of computed tomography (CT) of excised kidneys. We also evaluated whether otter nephroliths could be accurately classified by their CT densities, and we examined the renal tissue uric acid concentrations in free-ranging otters in North Carolina, USA. Kidneys were collected from carcasses of legally trapped, free-ranging animals. Nephroliths were observed in 16.2% of the individuals (n = 229). Associations were found between age and nephrolith status and between capture location and nephrolith status (P = 0.026 and < 0.001, respectively). Computed tomography Hounsfield unit density measurements were not useful in determining nephrolith chemical composition in this study. Renal tissue uric acid concentrations were similar across genders, age groups, and stone status. The chemical composition of the nephroliths was determined by scanning electron microscopy-energy dispersive X-ray spectroscopy to be calcium phosphate in the carbonate form. PMID:24712169

  9. Identifying groundwater-stream interaction in a karst region: Lower Flint River Basin, Georgia, USA

    NASA Astrophysics Data System (ADS)

    Rugel, K.; Jackson, C. R.; Golladay, S. W.; Hicks, D. W.; Dowd, J. F.

    2010-12-01

    Fracturing and dissolution of the Ocala Limestone formation in southwestern Georgia, USA, have resulted in mature karstic development and a high-yielding aquifer; the Upper Floridan. This aquifer, which supplies many millions of gallons of water per day for irrigated agriculture, is hydraulically connected to many streams throughout the lower Flint River Basin. Analyses of long-term data from the U.S. Geological Survey indicate significant changes in stream flow since irrigation intensified during the mid 1970’s. Natural stream flow declines during droughts are exacerbated by irrigation pumping both directly from streams and from the aquifer, threatening several federally-listed aquatic species in this region. We compare physiochemical characteristics of stream reaches within the lower Flint River Basin (including specific conductivity, NO3-, Ca+, δ18O, and δD) with remote sensing data to identify the locations of streambed fractures and joints, which could be enhancing stream-aquifer exchanges. These methods may be useful for updating current hydrologic models and providing information to resource managers charged with protecting vulnerable aquatic species in this and other watersheds.

  10. Water Hyacinth Identification Using CART Modeling With Hyperspectral Data in the Sacramento-San Joaquin River Delta of California

    NASA Astrophysics Data System (ADS)

    Khanna, S.; Hestir, E. L.; Santos, M. J.; Greenberg, J. A.; Ustin, S. L.

    2007-12-01

    Water hyacinth (Eichhornia crassipes) is an invasive aquatic weed that is causing severe economic and ecological impacts in the Sacramento-San Joaquin River Delta (California, USA). Monitoring its distribution using remote sensing is the crucial first step in modeling its predicted spread and implementing control and eradication efforts. However, accurately mapping this species is confounded by its several phenological forms, namely a healthy vegetative canopy, flowering canopy with dense conspicuous terminal flowers above the foliage, and floating dead and senescent forms. The full range of these phenologies may be simultaneously present at any time, given the heterogeneity of environmental and ecological conditions in the Delta. There is greater spectral variation within water hyacinth than between any of the co-occurring species (pennywort and water primrose), so classification approaches must take these different phenological stages into consideration. We present an approach to differentiating water hyacinth from co-occurring species based on knowledge of relevant variation in leaf chlorophyll, floral pigments, foliage water content, and variation in leaf structure using a classification and regression tree (CART) applied to airborne hyperspectral remote sensing imagery.

  11. Climate effects of pacific decadal oscillation on streamflow of the Feather River, California

    USGS Publications Warehouse

    Koczot, K.; Dettinger, M.

    2003-01-01

    The timing of maximum monthly-mean streamflow for the Feather River in northern California has come earlier in the year in recent decades (since the 1950s), as have timings in most rivers throughout California and the western United States. Much of the timing shift in the Feather River basin appears to coincide with interdecadal changes in the North Pacific climate regime. The coincident timing changes are seen as a shift in the month of maximum streamflow from April-May during the cooler Pacific Decadal Oscillation (PDO) phase to March-April during the warmer phase. The change in streamflow timing in the Feather River basin became an issue during the testing of a new set of watershed models of inflow to Lake Oroville, because model performance degraded in simulations of recent years (1998-2001). The model calibration period (1971-97) was dominated by the warmer (1977-98) PDO phase. However, the 1998-2001 period mostly corresponds to a newly reestablished cool PDO (beginning late 1998). Simulations during 1998-2001 failed to reproduce streamflow as well as simulations of the calibration period, probably because some model parameters, like those associated with rain-snow mixes or temperature and precipitation distributions, are not calibrated for climatic conditions that occur during a cool PDO.

  12. Risk of Myxobolus cerebralis infection to rainbow trout in the Madison River, Montana, USA

    USGS Publications Warehouse

    Krueger, R.C.; Kerans, B.L.; Vincent, E.R.; Rasmussen, C.

    2006-01-01

    Myxobolus cerebralis, the parasite that causes salmonid whirling disease, has had detrimental effects on several salmonid populations in the Intermountain West, including the rainbow trout in the Madison River, Montana, USA. The goal of this study was to examine relationships among characteristics of the environment, Tubifex tubifex (the alternate host) populations, and rainbow trout whirling disease risk in the Madison River. Environmental characteristics were measured in side channels of the Madison River, and differences were described with a principal components analysis. The density of T. tubifex, the prevalence of infection in T. tubifex, and the density of infected T. tubifex were determined for the side channels using benthic core samples and examination of live tubificids for infection. The site-specific contribution to whirling disease risk in the side channels was determined using in situ exposures of sentinel rainbow trout. Regression analyses were used to determine correlations among these characteristics. Side channels differed in site-specific contribution to rainbow trout whirling disease risk, which was positively correlated to the density of infected T. tubifex. Side channels with fine sediments and lower water temperatures made greater site-specific contribution to whirling disease risk and had higher densities of infected T. tubifex than side channels with coarser sediments and higher temperatures. The ability to characterize areas of high whirling disease risk is essential for improving our understanding of the dynamics of M. cerebralis such that appropriate management strategies can be implemented. In addition, this study provides a model of how the disease ecology of complex aquatic parasites can be examined when the influential processes operate on different spatial scales. ?? 2006 by the Ecological Society of America.

  13. Initial Geomorphic Responses to Removal of Milltown Dam, Clark Fork River, Montana, USA

    NASA Astrophysics Data System (ADS)

    Wilcox, A. C.; Brinkerhoff, D.; Woelfle-Erskine, C.

    2008-12-01

    The removal of Milltown Dam on the Clark Fork River, Montana, USA, is creating a field-scale experiment on upstream and downstream responses to dam removal and on how gravel-bed rivers respond to sediment pulses. Milltown Dam was removed in 2008, reconnecting the Clark Fork River to its upstream basin in terms of sediment transport and fish passage. This dam removal is especially notable because (1) it is the largest dam removal to date in the United States in terms of the volume of reservoir sediment potentially available for downstream transport (over 3 million m3; 1.7 million m3 are being mechanically removed); and (2) the dam is the downstream end of the largest Superfund site in the United States, the Clark Fork Complex, and reservoir sediments are composed largely of contaminated mine tailings. Data collection on pre- and post-dam removal channel morphology, bed sediment characteristics, and sediment loads are being used to investigate spatial and temporal patterns of sediment transport and deposition associated with this dam removal. In the first several months following breaching of the dam, snowmelt runoff with a 3-year recurrence interval peak caused substantial erosion and downstream transport of metals-laden sediments from Milltown reservoir. Reservoir sediments in the Clark Fork arm of Milltown reservoir eroded at levels far exceeding modeling predictions as a result of both incision to the new base level created by dam removal and bank retreat of over 200 m in reaches upstream of a constructed bypass reach and remediation area. Copper and other metals in these eroded reservoir sediments provide a tracer for identifying whether sediment deposits observed downstream of the dam originated from Milltown reservoir or uncontaminated tributaries and indicate that Milltown sediments have reached over 200 km downstream. Downstream deposition has been greatest along channel margins and in side-channel areas, whereas the transport capacity of the active channel

  14. Ecology of nonnative Siberian prawn (Palaemon modestus) in the lower Snake River, Washington, USA

    USGS Publications Warehouse

    Erhardt, John M.; Tiffan, Kenneth F.

    2016-01-01

    We assessed the abundance, distribution, and ecology of the nonnative Siberian prawn Palaemon modestus in the lower Snake River, Washington, USA. Analysis of prawn passage abundance at three Snake River dams showed that populations are growing at exponential rates, especially at Little Goose Dam where over 464,000 prawns were collected in 2015. Monthly beam trawling during 2011–2013 provided information on prawn abundance and distribution in Lower Granite and Little Goose Reservoirs. Zero-inflated regression predicted that the probability of prawn presence increased with decreasing water velocity and increasing depth. Negative binomial models predicted higher catch rates of prawns in deeper water and in closer proximity to dams. Temporally, prawn densities decreased slightly in the summer, likely due to the mortality of older individuals, and then increased in autumn and winter with the emergence and recruitment of young of the year. Seasonal length frequencies showed that distinct juvenile and adult size classes exist throughout the year, suggesting prawns live from 1 to 2 years and may be able to reproduce multiple times during their life. Most juvenile prawns become reproductive adults in 1 year, and peak reproduction occurs from late July through October. Mean fecundity (189 eggs) and reproductive output (11.9 %) are similar to that in their native range. The current use of deep habitats by prawns likely makes them unavailable to most predators in the reservoirs. The distribution and role of Siberian prawns in the lower Snake River food web will probably continue to change as the population grows and warrants continued monitoring and investigation.

  15. Biological and chemical characterization of metal bioavailability in sediments from Lake Roosevelt, Columbia River, Washington, USA

    USGS Publications Warehouse

    Besser, J.M.; Brumbaugh, W.G.; Ivey, C.D.; Ingersoll, C.G.; Moran, P.W.

    2008-01-01

    We studied the bioavailability and toxicity of copper, zinc, arsenic, cadmium, and lead in sediments from Lake Roosevelt (LR), a reservoir on the Columbia River in Washington, USA that receives inputs of metals from an upstream smelter facility. We characterized chronic sediment toxicity, metal bioaccumulation, and metal concentrations in sediment and pore water from eight study sites: one site upstream in the Columbia River, six sites in the reservoir, and a reference site in an uncontaminated tributary. Total recoverable metal concentrations in LR sediments generally decreased from upstream to downstream in the study area, but sediments from two sites in the reservoir had metal concentrations much lower than adjacent reservoir sites and similar to the reference site, apparently due to erosion of uncontaminated bank soils. Concentrations of acid-volatile sulfide in LR sediments were too low to provide strong controls on metal bioavailability, and selective sediment extractions indicated that metals in most LR sediments were primarily associated with iron and manganese oxides. Oligochaetes (Lumbriculus variegatus) accumulated greatest concentrations of copper from the river sediment, and greatest concentrations of arsenic, cadmium, and lead from reservoir sediments. Chronic toxic effects on amphipods (Hyalella azteca; reduced survival) and midge larvae (Chironomus dilutus; reduced growth) in whole-sediment exposures were generally consistent with predictions of metal toxicity based on empirical and equilibrium partitioning-based sediment quality guidelines. Elevated metal concentrations in pore waters of some LR sediments suggested that metals released from iron and manganese oxides under anoxic conditions contributed to metal bioaccumulation and toxicity. Results of both chemical and biological assays indicate that metals in sediments from both riverine and reservoir habitats of Lake Roosevelt are available to benthic invertebrates. These findings will be used as

  16. REVIEW OF THE FISHERIES OF THE SALTON SEA, CALIFORNIA, USA: PAST, PRESENT, FUTURE. (R826552)

    EPA Science Inventory

    The Salton Sea is an endorheic, 980-km2 salt lake in the Sonoran Desert of southern California. The historical fish community switched from freshwater to marine species as salinity increased due to evaporation and brackish water inflows. Three species, bairdiella (<...

  17. APPLICATION OF ENVIRONMENTAL GROUNDWATER TRACERS AT THE SULPHUR BANK MERCURY MINE, CALIFORNIA, USA

    EPA Science Inventory

    This paper reports on boron, chloride, sulfate, δD, δ18O, and 3H concentrations in surface water and groundwater samples from the Sulphur Bank Mercury Mine, California (SBMM) to examine and provide constraints on the site’s groundwater system. SBMM is an abandoned sulfur and merc...

  18. Olive fruit fly (Diptera: Tephritidae) in California table olives, USA: Invasion, distribution, and management implications

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Olive fruit fly, Bactrocera oleae (Rossi), was discovered in California in late 1998. Thereafter, intensive research was conducted to develop pest control methods in table olives. The life history of olive fruit fly was elucidated, and the distribution and abundance of the adults determined through ...

  19. Use of soil fumigants and air quality issues in California, USA

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Many high value cash crops use soil fumigants for profitable production.The primary fumigants used in California are 1,3-dichloropropene (Telone®), chloropicrin, metam salts (sodium or potassium), and methyl bromide. Most of these toxic chemicals and their formulations are volatile compounds (VOCs),...

  20. An Investigation of Summertime Inland Water Body Temperatures in California and Nevada (USA): Recent Trends and Future Projections

    NASA Astrophysics Data System (ADS)

    Healey, Nathan; Hook, Simon; Piccolroaz, Sebastiano; Toffolon, Marco; Radocinski, Robert

    2016-04-01

    Inland water body temperature has been identified as an ideal indicator of potential climate change. Understanding inland water body temperature trends is important for forecasting impacts to limnological, biological, and hydrological resources. Many inland water bodies are situated in remote locations with incomplete data records of in-situ monitoring or lack in-situ observations altogether. Thus, the utilization of satellite data is essential for understanding the behavior of global inland water body temperatures. Part of this research provides an analysis of summertime (July-September) temperature trends in the largest California/Nevada (USA) inland water bodies between 1991 and 2015. We examine satellite temperature retrievals from ATSR (ATSR-1, ATSR-2, AATSR), MODIS (Terra and Aqua), and VIIRS sensors. Our findings indicate that inland water body temperatures in the western United States were rapidly warming between 1991 and 2009, but since then trends have been decreasing. This research also includes implementation of a model called air2water to predict future inland water body surface temperature through the sole input of air temperature. Using projections from CMIP5-CCSM4 output, our model indicates that Lake Tahoe (USA) is expected to experience an increase of roughly 3 °C by 2100.

  1. Rapid formation of hyperpycnal sediment gravity currents offshore of a semi-arid California river

    NASA Astrophysics Data System (ADS)

    Warrick, Jonathan A.; Xu, Jingping; Noble, Marlene A.; Lee, Homa J.

    2008-05-01

    Observations of sediment dispersal from the Santa Clara River of southern California during two moderately sized river discharge events suggest that river sediment rapidly formed a negatively buoyant (hyperpycnal) bottom plume along the seabed within hours of peak discharge. An array of acoustic and optical sensors were placed at three stations 1 km from the Santa Clara River mouth in 10-m water depth during January-February 2004. These combined observations suggest that fluid mud concentrations of suspended sediment (>10 g/l) and across-shore gravity currents (˜5 cm/s) were observed in the lower 20-40 cm of the water column 4-6 h after discharge events. Gravity currents were wave dominated, rather than auto-suspending, and appeared to consist of silt-to-clay sized sediment from the river. Sediment mass balances suggest that 25-50% of the discharged river sediment was transported by these hyperpycnal currents. Sediment settling purely by flocs (˜1 mm/s) cannot explain the formation of the observed hyperpycnal plumes, therefore we suggest that some enhanced sediment settling from mixing, convective instabilities, or diverging plumes occurred that would explain the formation of the gravity currents. These combined results provide field evidence that high suspended-sediment concentrations from rivers (>1 g/l) may rapidly form hyperpycnal sediment gravity currents immediately offshore of river mouths, and these pathways can explain a significant portion of the river-margin sediment budget. The fate of this sediment will be strongly influenced by bathymetry, whereas the fate of the remaining sediment will be much more influenced by ocean currents.

  2. Episodic Channels: Effects of Regulation on Non-Equilibrium River Systems in California (Invited)

    NASA Astrophysics Data System (ADS)

    Kondolf, G. M.; Minear, J. T.

    2010-12-01

    Mediterranean-climate rivers are characterized by episodic channels, whose geomorphic work is concentrated in short, infrequent events (large floods), separated by long periods of quiescence in which the channel narrows and riparian vegetation can establish and mature, only to be disrupted by the next large disturbance. While not ‘pretty’ in conventional terms, such rivers support diverse assemblages of native species, adapted to the episodic regime. Because of the importance of irrigated agriculture in Mediterranean-climate regions, large reservoir storage projects are common, resulting in dam-induced reductions flood peaks, which have reduced dynamism in downstream channels. The result has been loss of habitat diversity and native species. A systems-level analysis of the Sacramento-San Joaquin and other rivers reveals that Q2 has commonly been reduced by 80%, sediment loads reduced, and vegetation encroached in formerly active channels. More profound have been hardening of banks and isolation of floodplains by levees. Restoration of ecological values in such rivers will require room for the river to move and flood, as well as floods sufficient to drive these processes. We identify a set of rivers with highest potential for re-activation or preservation of dynamic process in California.

  3. Trace elements in bed sediments of the San Joaquin River and its tributary streams, California, 1985

    SciTech Connect

    Clifton, D.G.; Gilliom, R.J.

    1989-01-01

    Bed sediments were sampled at 24 sites on the San Joaquin River, California and its tributaries in October 1985 to assess the distribution of trace elements and factors affecting their concentrations. The proportion of less than 62-micrometer sediment was significantly (alpha = 0.05) correlated with organic-carbon concentrations. Bed sediments from tributaries originating in the Sierra Nevada were much coarser than sediments in streams draining the Coast Range and western valley. Selenium concentrations in water have been measured. Interrelations among trace elements were examined using principal component analysis. 57% of the variance was accounted for in the first two principal components, which together show a distinct separation between sites dominated by Coast Range sediments and sites dominated by Sierra Nevada sediments. The third and fourth components accounted for 21% of the variance and distinguished the mixed-source sediments of the intermittent upper San Joaquin River from other parts of the river system. Generally, elements in bed sediments of the San Joaquin River and its tributaries were similar in concentration to elements in San Joaquin Valley soils, and concentrations were far below hazardous waste criteria. Concentrations were lower than in sediments from some polluted urban rivers and water more comparable to other rural agricultural rivers. 35 refs., 3 figs., 14 tabs.

  4. Channel Maintenance and Flushing Flows for the Klamath River Below Iron Gate Dam, California

    USGS Publications Warehouse

    Holmquist-Johnson, Cristopher L.; Milhous, Robert T.

    2010-01-01

    The Klamath River is a major river in northern California and southern Oregon. Iron Gate Dam divides the river into the two subunits where there is a significant change in utilization of the river. Downstream of Iron Gate Dam, the river is very important for the propagation of salmon. To address concerns relating to substrate conditions in the mainstem Klamath River below Iron Gate Dam, the Arcata, California, office of the U.S. Fish and Wildlife Service contracted with the U.S. Geological Survey (USGS) to determine flushing flows required to improve and maintain quality spawning and rearing habitats for salmon, and to reduce the abundance of preferred habitats of the polychaete worm suspected of being the intermediate host for Ceratomyxa shasta, a species of bacteria that infects fish. Historically, the river has had the capacity to move sediment just below Iron Gate Reservoir, but there have been periods when the capacity was very low. The results indicate that if the future is more like the pre-1961 period (low transport capacity) than the more recent period, there will be significant sediment issues in the Klamath River below Iron Gate Dam. It seems that during normal or wet years, winter months, and periods of high flow, sediments are flushed either downstream or deposited on higher surfaces. The recent drought conditions during 2000-2005 probably resulted in extensive fine-grained sedimentation along the river, which in turn may have caused increased establishment of aquatic vegetation and increased concentrations of C. shasta. It appears that releases from Iron Gate Dam as far downstream as Seiad Valley are important in maintaining flow conditions to flush the fines and clean the gravels in the river during summer months, or during drought years. Sediment transport studies indicate that supplemental flows during dry or drought conditions may provide some flushing flows in reaches downstream of the dam. For purposes of flushing fine sediments during drought

  5. Complete nucleotide sequence and genome organization of an endornavirus from bottle gourd (Lagenaria siceraria) in California, U.S.A.

    PubMed

    Kwon, Sun-Jung; Tan, Shih-Hua; Vidalakis, Georgios

    2014-08-01

    The full-length nucleotide sequence and genome organization of an Endornavirus isolated from ornamental hard shell bottle gourd plants (Lagenaria siceraria (Molina) Standl.) in California (CA), USA tentatively named L. siceraria endornavirus-California (LsEV-CA) was determined. The LsEV-CA genome was 15088 bp in length, with a G + C content of 36.55 %. The lengths of the 5' and 3' untranslated regions were 111 and 52 bp, respectively. The genome of LsEV-CA contained one large ORF encoding a 576 kDa polyprotein. The predicted protein contains two glycosyltransferase motifs, as well as RNA-dependent RNA polymerase and helicase domains. LsEV-CA was detected in healthy-looking field-grown gourd plants, as well as plants expressing yellows symptoms. It was also detected in non-symptomatic greenhouse-grown gourd seedlings grown from seed obtained from the same field sites. These preliminary data indicate that LsEV-CA is likely not associated with the gourd-yellows syndrome observed in the field. PMID:24818693

  6. Placing the 2012-2015 California-Nevada drought into a paleoclimatic context: Insights from Walker Lake, California-Nevada, USA

    NASA Astrophysics Data System (ADS)

    Hatchett, Benjamin J.; Boyle, Douglas P.; Putnam, Aaron E.; Bassett, Scott D.

    2015-10-01

    Assessing regional hydrologic responses to past climate changes can offer a guide for how water resources might respond to ongoing and future climate change. Here we employed a coupled water balance and lake evaporation model to examine Walker Lake behaviors during the Medieval Climate Anomaly (MCA), a time of documented hydroclimatic extremes. Together, a 14C-based shoreline elevation chronology, submerged subfossil tree stumps in the West Walker River, and regional paleoproxy evidence indicate a ~50 year pluvial episode that bridged two 140+ year droughts. We developed estimates of MCA climates to examine the transient lake behavior and evaluate watershed responses to climate change. Our findings suggest the importance of decadal climate persistence to elicit large lake-level fluctuations. We also simulated the current 2012-2015 California-Nevada drought and found that the current drought exceeds MCA droughts in mean severity but not duration.

  7. Transport and retention of dissolved silica in rivers of the conterminous USA

    NASA Astrophysics Data System (ADS)

    Lauerwald, Ronny; Hartmann, Jens; Jansen, Nils; Dürr, Hans H.

    2010-05-01

    Dissolved silica (DSi) is an important nutrient in freshwater and coastal ecosystems. The availability of DSi in aquatic ecosystems is governed by mobilization from the terrestrial system and fluvial transport. Part of the mobilized DSi is retained in the rivers, associated lakes and wetlands due to biotic uptake and sedimentation. On large scale, fluvial DSi fluxes to coastal zones have been assessed mainly based on data from sampling locations at or near the mouth of major world rivers, while for the limnic retention of silica only first-order estimates exist (e.g. Beusen et al., 2009). DSi fluxes from small basins are often neglected in analyses. For the conterminous USA, the mobilization of DSi has recently been analyzed by Jansen et al. (2010), who described an empirical DSi mobilization function trained on headwater catchments in which limnic DSi retention is less likely to occur. It is here hypothesized that for larger catchments retention of silica can be calculated as difference between predicted DSi mobilization and DSi fluxes derived from hydrochemical monitoring data. Based on this assumption, fluvial fluxes of DSi in the conterminous USA were analyzed distinguishing mobilization, retention, and export to the coastal zone. River chemistry data from the USGS programs WQN and NAWQA were used to calculate annual DSi fluxes for 638 sampling locations. For each water sampling location the river catchment and its properties (e.g. lithology, land cover, lake area) were derived. DSi mobilization was estimated spatially explicitly by applying a fitted mobilization function after Jansen et al. (2010). Silica retention was calculated by subtracting DSi fluxes based on USGS data from the predicted amount of mobilized DSi. Export of DSi was estimated for distinct coastal segments. For the analyses, average annual runoffs from two different data sets, gridded UNH/GRDC data (Fekete et al., 2002) and PCR-GLOBWB (Van Beek, 2007), were used. The respective results are

  8. Invading species in the Eel River, California: Successes, failures, and relationships with resident species

    USGS Publications Warehouse

    Brown, L.R.; Moyle, P.B.

    1997-01-01

    We examined invasions of non-native fishes into the Eel River, California. At least 16 species of fish have been introduced into the drainage which originally supported 12-14 fish species. Our study was prompted by the unauthorized introduction in 1979 of Sacramento squawfish, Ptychocheilus grandis, a large predatory cyprinid. From 1986 to 1990, we conducted growth and diet studies of squaw fish, conducted intensive surveys of the distribution and habitat associations of both native and introduced species, and examined the nature of species-habitat and interspecies relationships. We found no evidence for increased growth or expanded feeding habits, compared to native populations, of Sacramento squawfish as they invaded the Eel River drainage. Ten of the introduced species were well established, with four species limited to a reservoir and six species established in streams. The success or failure of introductions of stream species appeared to be a function of the ability of a species to survive the fluctuating, highly seasonal, flow regime. The present mixture of native and exotic species has not formed stable fish assemblages but it seems likely that four habitat-associated assemblages will develop. The overall effect of the successful species introductions has been to assemble a group of species, with some exceptions, that are native to and occur together in many California streams. The assemblages now forming are similar to those found in other California streams. The assemblage characterized by squawfish and suckers is likely to be resistant to invasion, in the absence of human caused habitat modifications.

  9. Age Determination of the Remaining Peat in the Sacramento-San Joaquin Delta, California, USA

    USGS Publications Warehouse

    Drexler, Judith Z.; de Fontaine, Christian S.; Knifong, Donna L.

    2007-01-01

    Introduction The Sacramento-San Joaquin Delta of California was once a 1,400 square kilometer (km2) tidal marsh, which contained a vast layer of peat ranging up to 15 meters (m) thick (Atwater and Belknap, 1980). Because of its favorable climate and highly fertile peat soils, the majority of the Delta was drained and reclaimed for agriculture during the late 1800s and early 1900s. Drainage of the peat soils changed the conditions in the surface layers of peat from anaerobic (having no free oxygen present) to aerobic (exposed to the atmosphere). This change in conditions greatly increased the decomposition rate of the peat, which consists largely of organic (plant) matter. Thus began the process of land-surface subsidence, which initially was a result of peat shrinkage and compaction, and later largely was a result of oxidation by which organic carbon in the peat essentially vaporized to carbon dioxide (Deverel and others, 1998; Ingebritsen and Ikehara, 1999). Because of subsidence, the land-surface elevation on farmed islands in the Delta has decreased from a few meters to as much as 8 m below local mean sea level (California Department of Water Resources, 1995; Steve Deverel, Hydrofocus, Inc., written commun., 2007). The USGS, in collaboration with the University of California at Davis, and Hydrofocus Inc. of Davis, California, has been studying the formation of the Delta and the impact of wetland reclamation on the peat column as part of a project called Rates and Evolution of Peat Accretion through Time (REPEAT). The purpose of this report is to provide results on the age of the remaining peat soils on four farmed islands in the Delta.

  10. Identifying sources of dissolved organic carbon in agriculturally dominated rivers using radiocarbon age dating: Sacramento-San Joaquin River Basin, California

    USGS Publications Warehouse

    Sickman, James O.; DiGiorgio, Carol L.; Davisson, M. Lee; Lucero, Delores M.; Bergamaschi, Brian A.

    2010-01-01

    We used radiocarbon measurements of dissolved organic carbon (DOC) to resolve sources of riverine carbon within agriculturally dominated landscapes in California. During 2003 and 2004, average Δ14C for DOC was -254‰ in agricultural drains in the Sacramento-San Joaquin Delta, -218‰ in the San Joaquin River, -175‰ in the California State Water Project and -152‰ in the Sacramento River. The age of bulk DOC transiting the rivers of California's Central Valley is the oldest reported for large rivers and suggests wide-spread loss of soil organic matter caused by agriculture and urbanization. Using DAX 8 adsorbent, we isolated and measured 14C concentrations in hydrophobic acid fractions (HPOA); river samples showed evidence of bomb-pulse carbon with average Δ14C of 91 and 76‰ for the San Joaquin and Sacramento Rivers, respectively, with older HPOA, -204‰, observed in agricultural drains. An operationally defined non-HPOA fraction of DOC was observed in the San Joaquin River with seasonally computed Δ14C values of between -275 and -687‰; the source of this aged material was hypothesized to be physically protected organic-matter in high clay-content soils and agrochemicals (i.e., radiocarbon-dead material) applied to farmlands. Mixing models suggest that the Sacramento River contributes about 50% of the DOC load in the California State Water Project, and agricultural drains contribute approximately one-third of the load. In contrast to studies showing stabilization of soil carbon pools within one or two decades following land conversion, sustained loss of soil organic matter, occurring many decades after the initial agricultural-land conversion, was observed in California's Central Valley.