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Sample records for spatial olap application

  1. Easier surveillance of climate-related health vulnerabilities through a Web-based spatial OLAP application

    PubMed Central

    Bernier, Eveline; Gosselin, Pierre; Badard, Thierry; Bédard, Yvan

    2009-01-01

    Background Climate change has a significant impact on population health. Population vulnerabilities depend on several determinants of different types, including biological, psychological, environmental, social and economic ones. Surveillance of climate-related health vulnerabilities must take into account these different factors, their interdependence, as well as their inherent spatial and temporal aspects on several scales, for informed analyses. Currently used technology includes commercial off-the-shelf Geographic Information Systems (GIS) and Database Management Systems with spatial extensions. It has been widely recognized that such OLTP (On-Line Transaction Processing) systems were not designed to support complex, multi-temporal and multi-scale analysis as required above. On-Line Analytical Processing (OLAP) is central to the field known as BI (Business Intelligence), a key field for such decision-support systems. In the last few years, we have seen a few projects that combine OLAP and GIS to improve spatio-temporal analysis and geographic knowledge discovery. This has given rise to SOLAP (Spatial OLAP) and a new research area. This paper presents how SOLAP and climate-related health vulnerability data were investigated and combined to facilitate surveillance. Results Based on recent spatial decision-support technologies, this paper presents a spatio-temporal web-based application that goes beyond GIS applications with regard to speed, ease of use, and interactive analysis capabilities. It supports the multi-scale exploration and analysis of integrated socio-economic, health and environmental geospatial data over several periods. This project was meant to validate the potential of recent technologies to contribute to a better understanding of the interactions between public health and climate change, and to facilitate future decision-making by public health agencies and municipalities in Canada and elsewhere. The project also aimed at integrating an initial

  2. Usability Evaluation of the Spatial OLAP Visualization and Analysis Tool (SOVAT)

    PubMed Central

    Scotch, Matthew; Parmanto, Bambang; Monaco, Valerie

    2015-01-01

    Increasingly sophisticated technologies, such as On-Line Analytical Processing (OLAP) and Geospatial Information Systems (GIS), are being leveraged for conducting community health assessments (CHA). Little is known about the usability of OLAP and GIS interfaces with respect to CHA. We conducted an iterative usability evaluation of the Spatial OLAP Visualization and Analysis Tool (SOVAT), a software application that combines OLAP and GIS. A total of nine graduate students and six community health researchers were asked to think-aloud while completing five CHA questions using SOVAT. The sessions were analyzed after every three participants and changes to the interface were made based on the findings. Measures included elapsed time, answers provided, erroneous actions, and satisfaction. Traditional OLAP interface features were poorly understood by participants and combined OLAP-GIS features needed to be better emphasized. The results suggest that the changes made to the SOVAT interface resulted in increases in both usability and user satisfaction. PMID:26613012

  3. A Conceptual Modeling Approach for OLAP Personalization

    NASA Astrophysics Data System (ADS)

    Garrigós, Irene; Pardillo, Jesús; Mazón, Jose-Norberto; Trujillo, Juan

    Data warehouses rely on multidimensional models in order to provide decision makers with appropriate structures to intuitively analyze data with OLAP technologies. However, data warehouses may be potentially large and multidimensional structures become increasingly complex to be understood at a glance. Even if a departmental data warehouse (also known as data mart) is used, these structures would be also too complex. As a consequence, acquiring the required information is more costly than expected and decision makers using OLAP tools may get frustrated. In this context, current approaches for data warehouse design are focused on deriving a unique OLAP schema for all analysts from their previously stated information requirements, which is not enough to lighten the complexity of the decision making process. To overcome this drawback, we argue for personalizing multidimensional models for OLAP technologies according to the continuously changing user characteristics, context, requirements and behaviour. In this paper, we present a novel approach to personalizing OLAP systems at the conceptual level based on the underlying multidimensional model of the data warehouse, a user model and a set of personalization rules. The great advantage of our approach is that a personalized OLAP schema is provided for each decision maker contributing to better satisfy their specific analysis needs. Finally, we show the applicability of our approach through a sample scenario based on our CASE tool for data warehouse development.

  4. CAMS: OLAPing Multidimensional Data Streams Efficiently

    NASA Astrophysics Data System (ADS)

    Cuzzocrea, Alfredo

    In the context of data stream research, taming the multidimensionality of real-life data streams in order to efficiently support OLAP analysis/mining tasks is a critical challenge. Inspired by this fundamental motivation, in this paper we introduce CAMS (C ube-based A cquisition model for M ultidimensional S treams), a model for efficiently OLAPing multidimensional data streams. CAMS combines a set of data stream processing methodologies, namely (i) the OLAP dimension flattening process, which allows us to obtain dimensionality reduction of multidimensional data streams, and (ii) the OLAP stream aggregation scheme, which aggregates data stream readings according to an OLAP-hierarchy-based membership approach. We complete our analytical contribution by means of experimental assessment and analysis of both the efficiency and the scalability of OLAPing capabilities of CAMS on synthetic multidimensional data streams. Both analytical and experimental results clearly connote CAMS as an enabling component for next-generation Data Stream Management Systems.

  5. The Composite OLAP-Object Data Model

    SciTech Connect

    Pourabbas, Elaheh; Shoshani, Arie

    2005-12-07

    In this paper, we define an OLAP-Object model that combines the main characteristics of OLAP and Object data models in order to achieve their functionalities in a common framework. We classify three different object classes: primitive, regular and composite. Then, we define a query language which uses the path concept in order to facilitate data navigation and data manipulation. The main feature of the proposed language is an anchor. It allows us to fix dynamically an object class (primitive, regular or composite) along the paths over the OLAP-Object data model for expressing queries. The queries can be formulated on objects, composite objects and combination of both. The power of the proposed query language is investigated through multiple query examples. The semantic of different clauses and syntax of the proposed language are investigated.

  6. Connecting traditional sciences with the OLAP and data mining paradigms

    NASA Astrophysics Data System (ADS)

    Guergachi, Aziz A.

    2003-03-01

    The paradigms of OLAP, multidimensional modeling and data mining have first emerged in the areas of market analysis and finance to address various needs of people working in these areas. Does this mean that they are useful and applicable in these areas only? Or, can they also be applicable in the other more traditional areas of science and engineering? What characterize the systems for which these paradigms are suitable? What are the goals of these paradigms? How do they relate to the traditional body of knowledge that has been developed throughout the centuries in the areas of mathematics, statistics, systems science and engineering? Where, how and to what extent can we leverage the conventional wisdom that has been accumulated in the aforementioned disciplines to develop a foundational basis for the above paradigms? The goal of this paper is to address these questions at the foundational level. We argue that the paradigms of OLAP, multidimensional modeling and data mining can also be applied successfully to complex engineering systems, such as membrane-based water/wastewater treatment plants, for example. We develop mathematically-based axiomatic definition of the concepts of 'dimension,' 'dimension level,' 'dimension hierarchy' and 'measure' using set theory and equivalence relations.

  7. Using data warehousing and OLAP in public health care.

    PubMed

    Hristovski, D; Rogac, M; Markota, M

    2000-01-01

    The paper describes the possibilities of using data warehousing and OLAP technologies in public health care in general and then our own experience with these technologies gained during the implementation of a data warehouse of outpatient data at the national level. Such a data warehouse serves as a basis for advanced decision support systems based on statistical, OLAP or data mining methods. We used OLAP to enable interactive exploration and analysis of the data. We found out that data warehousing and OLAP are suitable for the domain of public health and that they enable new analytical possibilities in addition to the traditional statistical approaches. PMID:11079907

  8. Examining the Impact of Culture and Human Elements on OLAP Tools Usefulness

    ERIC Educational Resources Information Center

    Sharoupim, Magdy S.

    2010-01-01

    The purpose of the present study was to examine the impact of culture and human-related elements on the On-line Analytical Processing (OLAP) usability in generating decision-making information. The use of OLAP technology has evolved rapidly and gained momentum, mainly due to the ability of OLAP tools to examine and query large amounts of data sets…

  9. View discovery in OLAP databases through statistical combinatorial optimization

    SciTech Connect

    Hengartner, Nick W; Burke, John; Critchlow, Terence; Joslyn, Cliff; Hogan, Emilie

    2009-01-01

    OnLine Analytical Processing (OLAP) is a relational database technology providing users with rapid access to summary, aggregated views of a single large database, and is widely recognized for knowledge representation and discovery in high-dimensional relational databases. OLAP technologies provide intuitive and graphical access to the massively complex set of possible summary views available in large relational (SQL) structured data repositories. The capability of OLAP database software systems to handle data complexity comes at a high price for analysts, presenting them a combinatorially vast space of views of a relational database. We respond to the need to deploy technologies sufficient to allow users to guide themselves to areas of local structure by casting the space of 'views' of an OLAP database as a combinatorial object of all projections and subsets, and 'view discovery' as an search process over that lattice. We equip the view lattice with statistical information theoretical measures sufficient to support a combinatorial optimization process. We outline 'hop-chaining' as a particular view discovery algorithm over this object, wherein users are guided across a permutation of the dimensions by searching for successive two-dimensional views, pushing seen dimensions into an increasingly large background filter in a 'spiraling' search process. We illustrate this work in the context of data cubes recording summary statistics for radiation portal monitors at US ports.

  10. View Discovery in OLAP Databases through Statistical Combinatorial Optimization

    SciTech Connect

    Joslyn, Cliff A.; Burke, Edward J.; Critchlow, Terence J.

    2009-05-01

    The capability of OLAP database software systems to handle data complexity comes at a high price for analysts, presenting them a combinatorially vast space of views of a relational database. We respond to the need to deploy technologies sufficient to allow users to guide themselves to areas of local structure by casting the space of ``views'' of an OLAP database as a combinatorial object of all projections and subsets, and ``view discovery'' as an search process over that lattice. We equip the view lattice with statistical information theoretical measures sufficient to support a combinatorial optimization process. We outline ``hop-chaining'' as a particular view discovery algorithm over this object, wherein users are guided across a permutation of the dimensions by searching for successive two-dimensional views, pushing seen dimensions into an increasingly large background filter in a ``spiraling'' search process. We illustrate this work in the context of data cubes recording summary statistics for radiation portal monitors at US ports.

  11. Incorporating Spatial Data into Enterprise Applications

    NASA Astrophysics Data System (ADS)

    Akiki, Pierre; Maalouf, Hoda

    The main goal of this chapter is to discuss the usage of spatial data within enterprise as well as smaller line-of-business applications. In particular, this chapter proposes new methodologies for storing and manipulating vague spatial data and provides methods for visualizing both crisp and vague spatial data. It also provides a comparison between different types of spatial data, mainly 2D crisp and vague spatial data, and their respective fields of application. Additionally, it compares existing commercial relational database management systems, which are the most widely used with enterprise applications, and discusses their deficiencies in terms of spatial data support. A new spatial extension package called Spatial Extensions (SPEX) is provided in this chapter and is tested on a software prototype.

  12. Developing Access Control Model of Web OLAP over Trusted and Collaborative Data Warehouses

    NASA Astrophysics Data System (ADS)

    Fugkeaw, Somchart; Mitrpanont, Jarernsri L.; Manpanpanich, Piyawit; Juntapremjitt, Sekpon

    This paper proposes the design and development of Role- based Access Control (RBAC) model for the Single Sign-On (SSO) Web-OLAP query spanning over multiple data warehouses (DWs). The model is based on PKI Authentication and Privilege Management Infrastructure (PMI); it presents a binding model of RBAC authorization based on dimension privilege specified in attribute certificate (AC) and user identification. Particularly, the way of attribute mapping between DW user authentication and privilege of dimensional access is illustrated. In our approach, we apply the multi-agent system to automate flexible and effective management of user authentication, role delegation as well as system accountability. Finally, the paper culminates in the prototype system A-COLD (Access Control of web-OLAP over multiple DWs) that incorporates the OLAP features and authentication and authorization enforcement in the multi-user and multi-data warehouse environment.

  13. The M-OLAP Cube Selection Problem: A Hyper-polymorphic Algorithm Approach

    NASA Astrophysics Data System (ADS)

    Loureiro, Jorge; Belo, Orlando

    OLAP systems depend heavily on the materialization of multidimensional structures to speed-up queries, whose appropriate selection constitutes the cube selection problem. However, the recently proposed distribution of OLAP structures emerges to answer new globalization's requirements, capturing the known advantages of distributed databases. But this hardens the search for solutions, especially due to the inherent heterogeneity, imposing an extra characteristic of the algorithm that must be used: adaptability. Here the emerging concept known as hyper-heuristic can be a solution. In fact, having an algorithm where several (meta-)heuristics may be selected under the control of a heuristic has an intrinsic adaptive behavior. This paper presents a hyper-heuristic polymorphic algorithm used to solve the extended cube selection and allocation problem generated in M-OLAP architectures.

  14. Multidimensional Analysis and Location Intelligence Application for Spatial Data Warehouse Hotspot in Indonesia using SpagoBI

    NASA Astrophysics Data System (ADS)

    Uswatun Hasanah, Gamma; Trisminingsih, Rina

    2016-01-01

    Spatial data warehouse refers to data warehouse which has a spatial component that represents the geographic location of the position or an object on the Earth's surface. Spatial data warehouse can be visualized in the form of a crosstab tables, graphs, and maps. Spatial data warehouse of hotspot in Indonesia has been constructed by researchers from FIRM NASA 2006-2015. This research develops multidimensional analysis module and location intelligence module using SpagoBI. The multidimensional analysis module is able to visualize online analytical processing (OLAP). The location intelligence module creates dynamic map visualization in map zone and map point. Map zone can display the different colors based on the number of hotspot in each region and map point can display different sizes of the point to represent the number of hotspots in each region. This research is expected to facilitate users in the presentation of hotspot data as needed.

  15. Spatial transformations: from fundamentals to applications

    PubMed Central

    Foster, Robert; Grant, Patrick; Hao, Yang; Hibbins, Alastair; Philbin, Thomas; Sambles, Roy

    2015-01-01

    This paper forms the introduction to this themed issue of Philosophical Transactions of the Royal Society A on ‘Spatial transformations’, arising from the Royal Society Scientific Discussion Meeting held in January 2015. The paper begins with a review of the concepts and history of spatial transformations, followed by a discussion of the contributions from the papers in this themed issue. A summary of the advantages and current limitations of spatial transformations concludes the paper, with the key challenges identified at the Scientific Discussion Meeting also given. PMID:26217061

  16. Hedonic approaches based on spatial econometrics and spatial statistics: application to evaluation of project benefits

    NASA Astrophysics Data System (ADS)

    Tsutsumi, Morito; Seya, Hajime

    2009-12-01

    This study discusses the theoretical foundation of the application of spatial hedonic approaches—the hedonic approach employing spatial econometrics or/and spatial statistics—to benefits evaluation. The study highlights the limitations of the spatial econometrics approach since it uses a spatial weight matrix that is not employed by the spatial statistics approach. Further, the study presents empirical analyses by applying the Spatial Autoregressive Error Model (SAEM), which is based on the spatial econometrics approach, and the Spatial Process Model (SPM), which is based on the spatial statistics approach. SPMs are conducted based on both isotropy and anisotropy and applied to different mesh sizes. The empirical analysis reveals that the estimated benefits are quite different, especially between isotropic and anisotropic SPM and between isotropic SPM and SAEM; the estimated benefits are similar for SAEM and anisotropic SPM. The study demonstrates that the mesh size does not affect the estimated amount of benefits. Finally, the study provides a confidence interval for the estimated benefits and raises an issue with regard to benefit evaluation.

  17. APPLICATION OF SPATIAL INFORMATION TECHNOLOGY TO PETROLEUM RESOURCE ASSESSMENT ANALYSIS.

    USGS Publications Warehouse

    Miller, Betty M.; Domaratz, Michael A.

    1984-01-01

    Petroleum resource assessment procedures require the analysis of a large volume of spatial data. The US Geological Survey (USGS) has developed and applied spatial information handling procedures and digital cartographic techniques to a recent study involving the assessment of oil and gas resource potential for 74 million acres of designated and proposed wilderness lands in the western United States. The part of the study which dealt with the application of spatial information technology to petroleum resource assessment procedures is reviewed. A method was designed to expedite the gathering, integrating, managing, manipulating and plotting of spatial data from multiple data sources that are essential in modern resource assessment procedures.

  18. Radiographic applications of spatial frequency multiplexing

    NASA Technical Reports Server (NTRS)

    Macovski, A.

    1981-01-01

    The application of spacial frequency encoding techniques which allow different regions of the X-ray spectrum to be encoded on conventional radiographs was studied. Clinical considerations were reviewed, as were experimental studies involving the encoding and decoding of X-ray images at different energies and the subsequent processing of the data to produce images of specific materials in the body.

  19. Applications of spatially offset Raman spectroscopy to defense and security

    NASA Astrophysics Data System (ADS)

    Guicheteau, Jason; Hopkins, Rebecca

    2016-05-01

    Spatially offset Raman spectroscopy (SORS) allows for sub-surface and through barrier detection and has applications in drug analysis, cancer detection, forensic science, as well as defense and security. This paper reviews previous efforts in SORS and other through barrier Raman techniques and presents a discussion on current research in defense and security applications.

  20. Proposal of Interactive Applications to Enhance Student's Spatial Perception

    ERIC Educational Resources Information Center

    Moran, Samuel; Rubio, Ramon; Gallego, Ramon; Suarez, Javier; Martin, Santiago

    2008-01-01

    The aim of this series of applications is to enhance students' spatial perception capacity by means of exercises that require the student to concentrate on mentally recreating the figures represented. Each application is designed with an increasing level of difficulty, designed to increase the students' concentration and train their spatial…

  1. Spatial extended hazard model with application to prostate cancer survival.

    PubMed

    Li, Li; Hanson, Timothy; Zhang, Jiajia

    2015-06-01

    This article develops a Bayesian semiparametric approach to the extended hazard model, with generalization to high-dimensional spatially grouped data. County-level spatial correlation is accommodated marginally through the normal transformation model of Li and Lin (2006, Journal of the American Statistical Association 101, 591-603), using a correlation structure implied by an intrinsic conditionally autoregressive prior. Efficient Markov chain Monte Carlo algorithms are developed, especially applicable to fitting very large, highly censored areal survival data sets. Per-variable tests for proportional hazards, accelerated failure time, and accelerated hazards are efficiently carried out with and without spatial correlation through Bayes factors. The resulting reduced, interpretable spatial models can fit significantly better than a standard additive Cox model with spatial frailties. PMID:25521422

  2. Design and implementation of GGEarth spatial data service application system

    NASA Astrophysics Data System (ADS)

    Chen, Jianhua; Miao, Fang; Wang, Weihong; Wang, Huajun

    2009-06-01

    The digital earth concept has aroused strong repercussions and been arousing researches boom both at home and abroad once it is proposed. Many digital earth prototype systems have been researched and distributed in worldwide, and the Google Earth is more typical. The booming development of digital earth's research and its prototype's development bring about G/S mode timely, a novel spatial information distributing access, and organization software architecture mode. Based on native GML spatial database system and Google Earth, with G/S mode as its architecture, and combination with GML/KML compressive transport and transformation, this paper proposed and designed the software architecture of GGEarth spatial data service application system, the research content and key implementation technologies were given. This system provides functions of data presentation, query, update and spatial analysis, which uses native GML spatial database (and GML, KML documents) as the standard data center, and the client based on Google Earth COM API as the front-end. This system can be applied in fields of digital city, digital tourism and traditional Web GIS. The authors developed the GGEarth experimental system and ran it with the data of '5.12' Wenchuan earthquake timing and the model data of digital Jiuzhaigou virtual tourism. Some running screenshots are also given.

  3. Management model application at nested spatial levels in Mediterranean Basins

    NASA Astrophysics Data System (ADS)

    Lo Porto, Antonio; De Girolamo, Anna Maria; Froebrich, Jochen

    2014-05-01

    In the EU Water Framework Directive (WFD) implementation processes, hydrological and water quality models can be powerful tools that allow to design and test alternative management strategies, as well as judging their general feasibility and acceptance. Although in recent decades several models have been developed, their use in Mediterranean basins, where rivers have a temporary character, is quite complex and there is limited information in literature which can facilitate model applications and result evaluations in this region. The high spatial variability which characterizes rainfall events, soil hydrological properties and land uses of Mediterranean basin makes more difficult to simulate hydrological and water quality in this region than in other Countries. This variability also has several implications in modeling simulations results especially when simulations at different spatial scale are needed for watershed management purpose. It is well known that environmental processes operating at different spatial scale determine diverse impacts on water quality status (hydrological, chemical, ecological). Hence, the development of management strategies have to include both large scale (watershed) and local spatial scales approaches (e.g. stream reach). This paper presents the results of a study which analyzes how the spatial scale affects the results of hydrologic process and water quality of model simulations in a Mediterranean watershed. Several aspects involved in modeling hydrological and water quality processes at different spatial scale for river basin management are investigated including model data requirements, data availability, model results and uncertainty. A hydrologic and water quality model (SWAT) was used to simulate hydrologic processes and water quality at different spatial scales in the Candelaro river basin (Puglia, S-E Italy) and to design management strategies to reach as possible WFD goals. When studying a basin to assess its current status

  4. Spatial effects in real networks: Measures, null models, and applications

    NASA Astrophysics Data System (ADS)

    Ruzzenenti, Franco; Picciolo, Francesco; Basosi, Riccardo; Garlaschelli, Diego

    2012-12-01

    Spatially embedded networks are shaped by a combination of purely topological (space-independent) and space-dependent formation rules. While it is quite easy to artificially generate networks where the relative importance of these two factors can be varied arbitrarily, it is much more difficult to disentangle these two architectural effects in real networks. Here we propose a solution to this problem, by introducing global and local measures of spatial effects that, through a comparison with adequate null models, effectively filter out the spurious contribution of nonspatial constraints. Our filtering allows us to consistently compare different embedded networks or different historical snapshots of the same network. As a challenging application we analyze the World Trade Web, whose topology is known to depend on geographic distances but is also strongly determined by nonspatial constraints (degree sequence or gross domestic product). Remarkably, we are able to detect weak but significant spatial effects both locally and globally in the network, showing that our method succeeds in retrieving spatial information even when nonspatial factors dominate. We finally relate our results to the economic literature on gravity models and trade globalization.

  5. Large capacity spatially multiplexed optical memories for incoherent correlator application

    NASA Astrophysics Data System (ADS)

    Yu, Francis T.

    1987-05-01

    We have, in this research program, completed various significant aspects on the study of a Large Capacity Spatially Multiplexed Optical Correlator. They are summarized in the following paragraphs: We have quantitatively analyzed the noise performance of an incoherent optical signal processor. The effects due to temporal coherence and due to spatial coherence were studied. In this period, we have also completed research on a real-time large-capacity rapid-scanning optical correlator utilizing a rotating grating concept. We have shown that the proposed optical scanning correlator is capable of processing large-capacity optical memories with rapid spectrum scanning. With the implementation of a closed-circuit TV system the OSC system can be applied in real-world situations. A study of polychromatic correlation by spectral-spatial matched filtering has been conducted. Application of this technique to large capability spatially multiplexing matched filter synthesis is discussed. This technique offers true color signal detection, which is suitable for color image recognition and identification. We have also developed a joint transform correlation concept. This technique utilizes a magneto-optic device with a liquid crystal light valve.

  6. A spatial haplotype copying model with applications to genotype imputation.

    PubMed

    Yang, Wen-Yun; Hormozdiari, Farhad; Eskin, Eleazar; Pasaniuc, Bogdan

    2015-05-01

    Ever since its introduction, the haplotype copy model has proven to be one of the most successful approaches for modeling genetic variation in human populations, with applications ranging from ancestry inference to genotype phasing and imputation. Motivated by coalescent theory, this approach assumes that any chromosome (haplotype) can be modeled as a mosaic of segments copied from a set of chromosomes sampled from the same population. At the core of the model is the assumption that any chromosome from the sample is equally likely to contribute a priori to the copying process. Motivated by recent works that model genetic variation in a geographic continuum, we propose a new spatial-aware haplotype copy model that jointly models geography and the haplotype copying process. We extend hidden Markov models of haplotype diversity such that at any given location, haplotypes that are closest in the genetic-geographic continuum map are a priori more likely to contribute to the copying process than distant ones. Through simulations starting from the 1000 Genomes data, we show that our model achieves superior accuracy in genotype imputation over the standard spatial-unaware haplotype copy model. In addition, we show the utility of our model in selecting a small personalized reference panel for imputation that leads to both improved accuracy as well as to a lower computational runtime than the standard approach. Finally, we show our proposed model can be used to localize individuals on the genetic-geographical map on the basis of their genotype data. PMID:25526526

  7. [Scan statistic theory and its application in spatial epidemiology].

    PubMed

    Li, Xiu-yang; Chen, Kun

    2008-08-01

    To introduce the basic concept of scan statistic, its computation method and application in the area of spatial epidemiology. Retrospective space-time permutation statistics for evaluating the clustering of disease monitoring program is illustrated, using data on recent acute onset of cardiovascular disease in Hangzhou, China. Calculations were performed with SaTScan Version 7.0.3. With 999 Monte Carlo replications, the program took 5 seconds to run on a 100-MHz Pentium PC. The geographical surveillance program on acute onset clusters of cardiovascular disease, data which showed statistical significance, would include: a) from January 1, 1997 to February 28, 2007 in Qiantan township, Jiande county (P = 0.001); b) highly significant between January 1, 1997 and February 28, 1999 for Lushan street, Lingqiao township in Fuyang county (P = 0.003); c) between March 1, 2001 and February 29, 2004 for Dayuan town, Xinyi town, Shouxiang town in Fuyang (P = 0.004); d) between March 1, 2004 and Feb 28, 2006 for Chengzhan street, Ziyang street, Hubin street, Qinbo street, Xiaoying street, Wangjiang street, Chaoming street, Changqing street, Wulin street, Tianshui street, Wenhui street and Shiqiao street in Hangzhou (P = 0.005), respectively. The retrospective space-time permutation statistics seems useful as a screening tool for identifying the cluster of disease. Scan statistics are practical and effective method for deciding which cluster alarms would merit further investigation and which clusters are probably chance occurrences in the study of spatial epidemiology. PMID:19103124

  8. Spatial and statistical GIS Applications for geological and environmental courses

    NASA Astrophysics Data System (ADS)

    Marsellos, A.; Tsakiri, K.

    2012-12-01

    Building student's career through undergraduate and graduate courses integrated with modern statistical and GIS software foster a competitive curriculum for their future employment. We present examples that may be introduced in geological courses (e.g. mineralogy, geomorphology, geochronology, structural geology, tectonics, stratigraphy) and environmental courses (natural hazards, hydrology, atmospheric science). Univariate and multivariate statistical models can be used for the interpretation and mapping of the geological and environmental problems. Some of the main statistical univariate models such as the normal distribution as well as the multivariate methods such as the principal component analysis, cluster analysis and factor analysis are the basic methods for understanding the variables of the environmental and geological problems. Examples are presented describing the basic steps for the solution of the problems. Some of the geological problems in different scales are the interpretation of 3D structural data, identification of suitable outcrops for mapping shear sense kinematic indicators. categorical or cluster analysis on lineations depending on their origin, topology of mineral assemblages and spatial distribution of their c-axis, distinguishing paleo-elevations using cluster analysis in geomorphological structures using LiDAR intensity and elevation data for determination of meander evolution patterns and prediction of vulnerable sites for flooding or landsliding. Other applications in atmospheric and hydrology science are the prediction of ground level ozone and the decomposition of water use time series. Those fundamental statistical and spatial concepts may be used in the field or in the lab. In the lab, modern computers and friendly interface user software allow students to process data using advanced statistical methods and GIS techniques. Modern applications in tablets or smart phones may complement field work. Teaching those methods can

  9. Spatial processing techniques for satellite altimetry applications in continental hydrology

    NASA Astrophysics Data System (ADS)

    Maillard, Philippe; Calmant, Stéphane

    2013-10-01

    Radar-based satellite altimetry is a well recognized measuring technique with good precision for oceanographic applications. For continental hydrology, its use is complicated by a number of factors such as river width, satellite crossing angle and noise from the river banks or islands. These factors make precision vary significantly. The satellite crossing points can be made into virtual gauging stations that can complement the existing network of in situ stations. This article describes a series of spatially explicit processing to correct or exclude altimetry measurements not related to the water level. While some processing take advantage of a priori information such as the centerline of the river, other processing are based on pattern recognition to characterize the shape described by the sequence of points. These problems are dealt with by fitting a second degree polynomial curve to the sequence of points and characterizing its shape. The correction is applied by determining a weight for each point in the crossing sequence of measurements. These processing approaches have been combined into a single tool called VHSTOOL. The method is tested on a 1000 km stretch of the S˜ao Francisco River in Brazil. Data from Envisat cover the 2003-2010 period while the recently launched Altika sensor provided data for a few months in 2013. Results show that the average accuracy of 60 cm obtained (45 cm by removing outliers) is comparable to that of completely manual methods. Altika measurements could not be validated since no recent in situ data was available but initial evaluation suggests increased details should bring some improvements over Envisat data.

  10. Correlation of Spatially Filtered Dynamic Speckles in Distance Measurement Application

    SciTech Connect

    Semenov, Dmitry V.; Nippolainen, Ervin; Kamshilin, Alexei A.; Miridonov, Serguei V.

    2008-04-15

    In this paper statistical properties of spatially filtered dynamic speckles are considered. This phenomenon was not sufficiently studied yet while spatial filtering is an important instrument for speckles velocity measurements. In case of spatial filtering speckle velocity information is derived from the modulation frequency of filtered light power which is measured by photodetector. Typical photodetector output is represented by a narrow-band random noise signal which includes non-informative intervals. Therefore more or less precious frequency measurement requires averaging. In its turn averaging implies uncorrelated samples. However, conducting research we found that correlation is typical property not only of dynamic speckle patterns but also of spatially filtered speckles. Using spatial filtering the correlation is observed as a response of measurements provided to the same part of the object surface or in case of simultaneously using several adjacent photodetectors. Found correlations can not be explained using just properties of unfiltered dynamic speckles. As we demonstrate the subject of this paper is important not only from pure theoretical point but also from the point of applied speckle metrology. E.g. using single spatial filter and an array of photodetector can greatly improve accuracy of speckle velocity measurements.

  11. Spatial filtering efficiency of monostatic biaxial lidar: analysis and applications.

    PubMed

    Agishev, Ravil R; Comeron, Adolfo

    2002-12-20

    Results of lidar modeling based on spatial-angular filtering efficiency criteria are presented. Their analysis shows that the low spatial-angular filtering efficiency of traditional visible and near-infrared systems is an important cause of low signal/background-radiation ratio (SBR) at the photodetector input The low SBR may be responsible for considerable measurement errors and ensuing the low accuracy of the retrieval of atmospheric optical parameters. As shown, the most effective protection against sky background radiation for groundbased biaxial lidars is the modifying of their angular field according to a spatial-angular filtering efficiency criterion. Some effective approaches to achieve a high filtering efficiency for the receiving system optimization are discussed. PMID:12510915

  12. Bayesian spatial transformation models with applications in neuroimaging data

    PubMed Central

    Miranda, Michelle F.; Zhu, Hongtu; Ibrahim, Joseph G.

    2013-01-01

    Summary The aim of this paper is to develop a class of spatial transformation models (STM) to spatially model the varying association between imaging measures in a three-dimensional (3D) volume (or 2D surface) and a set of covariates. Our STMs include a varying Box-Cox transformation model for dealing with the issue of non-Gaussian distributed imaging data and a Gaussian Markov Random Field model for incorporating spatial smoothness of the imaging data. Posterior computation proceeds via an efficient Markov chain Monte Carlo algorithm. Simulations and real data analysis demonstrate that the STM significantly outperforms the voxel-wise linear model with Gaussian noise in recovering meaningful geometric patterns. Our STM is able to reveal important brain regions with morphological changes in children with attention deficit hyperactivity disorder. PMID:24128143

  13. GIS application on spatial landslide analysis using statistical based models

    NASA Astrophysics Data System (ADS)

    Pradhan, Biswajeet; Lee, Saro; Buchroithner, Manfred F.

    2009-09-01

    This paper presents the assessment results of spatially based probabilistic three models using Geoinformation Techniques (GIT) for landslide susceptibility analysis at Penang Island in Malaysia. Landslide locations within the study areas were identified by interpreting aerial photographs, satellite images and supported with field surveys. Maps of the topography, soil type, lineaments and land cover were constructed from the spatial data sets. There are ten landslide related factors were extracted from the spatial database and the frequency ratio, fuzzy logic, and bivariate logistic regression coefficients of each factor was computed. Finally, landslide susceptibility maps were drawn for study area using frequency ratios, fuzzy logic and bivariate logistic regression models. For verification, the results of the analyses were compared with actual landslide locations in study area. The verification results show that bivariate logistic regression model provides slightly higher prediction accuracy than the frequency ratio and fuzzy logic models.

  14. Full Spatial Resolution Infrared Sounding Application in the Preconvection Environment

    NASA Astrophysics Data System (ADS)

    Liu, C.; Liu, G.; Lin, T.

    2013-12-01

    Advanced infrared (IR) sounders such as the Atmospheric Infrared Sounder (AIRS) and Infrared Atmospheric Sounding Interferometer (IASI) provide atmospheric temperature and moisture profiles with high vertical resolution and high accuracy in preconvection environments. The derived atmospheric stability indices such as convective available potential energy (CAPE) and lifted index (LI) from advanced IR soundings can provide critical information 1 ; 6 h before the development of severe convective storms. Three convective storms are selected for the evaluation of applying AIRS full spatial resolution soundings and the derived products on providing warning information in the preconvection environments. In the first case, the AIRS full spatial resolution soundings revealed local extremely high atmospheric instability 3 h ahead of the convection on the leading edge of a frontal system, while the second case demonstrates that the extremely high atmospheric instability is associated with the local development of severe thunderstorm in the following hours. The third case is a local severe storm that occurred on 7-8 August 2010 in Zhou Qu, China, which caused more than 1400 deaths and left another 300 or more people missing. The AIRS full spatial resolution LI product shows the atmospheric instability 3.5 h before the storm genesis. The CAPE and LI from AIRS full spatial resolution and operational AIRS/AMSU soundings along with Geostationary Operational Environmental Satellite (GOES) Sounder derived product image (DPI) products were analyzed and compared. Case studies show that full spatial resolution AIRS retrievals provide more useful warning information in the preconvection environments for determining favorable locations for convective initiation (CI) than do the coarser spatial resolution operational soundings and lower spectral resolution GOES Sounder retrievals. The retrieved soundings are also tested in a regional data assimilation WRF 3D-var system to evaluate the

  15. Bayesian spatial models: Applications for tropospheric ozone data

    NASA Astrophysics Data System (ADS)

    Menezes, Kim Anne

    1999-12-01

    This research addresses issues pertaining to trend estimation in tropospheric ozone data as well as estimation of the spatial correlation structure of these data collected at multiple monitoring sites. Assessing long-term trends in tropospheric ozone data is imperative because of its adverse effect on human health and on agricultural crops. Moreover, we also estimate the spatial correlation structure of such data, which is essential for spatial trend estimation, spatial prediction and for redesigning an existing network of stations. The U.S. Environmental Protection Agency's (EPA) National Ambient Air Quality Standard for ozone is stated in terms of exceedances of a specified threshold level. Therefore, the EPA is concerned with the long-term trend in the probability of an exceedance. In the first part of my dissertation we build a multivariate nonparametric probit regression model estimated within a hierarchical Bayes framework to model the probability of an exceedance after allowing for the effects of changing meteorological conditions. There are three advantages to using this model. First, the trends estimated at each site in a region can be separated into a city-wide component that is common to all sites, and a site-specific component that is unique to the individual site. Second, the hierarchical Bayes framework allows for the ``borrowing of strength'' from data collected at other monitoring sites to increase the information available regarding the trend at each individual site. Third, the nonparametric model does not require the a priori specification of the functional forms relating the probability of an exceedance to the meteorological variables. Ozone data from four Houston monitoring sites for the period 1981-1997 are analyzed. In the second part we provide a penalized likelihood approach to estimating the spatial correlation structure when the assumptions of stationarity and isotropy are violated. The spatial correlation structure under these

  16. Implementing an SIG based platform of application and service for city spatial information in Shanghai

    NASA Astrophysics Data System (ADS)

    Yu, Bailang; Wu, Jianping

    2006-10-01

    Spatial Information Grid (SIG) is an infrastructure that has the ability to provide the services for spatial information according to users' needs by means of collecting, sharing, organizing and processing the massive distributed spatial information resources. This paper presents the architecture, technologies and implementation of the Shanghai City Spatial Information Application and Service System, a SIG based platform, which is an integrated platform that serves for administration, planning, construction and development of the city. In the System, there are ten categories of spatial information resources, including city planning, land-use, real estate, river system, transportation, municipal facility construction, environment protection, sanitation, urban afforestation and basic geographic information data. In addition, spatial information processing services are offered as a means of GIS Web Services. The resources and services are all distributed in different web-based nodes. A single database is created to store the metadata of all the spatial information. A portal site is published as the main user interface of the System. There are three main functions in the portal site. First, users can search the metadata and consequently acquire the distributed data by using the searching results. Second, some spatial processing web applications that developed with GIS Web Services, such as file format conversion, spatial coordinate transfer, cartographic generalization and spatial analysis etc, are offered to use. Third, GIS Web Services currently available in the System can be searched and new ones can be registered. The System has been working efficiently in Shanghai Government Network since 2005.

  17. Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics.

    PubMed

    Breckels, Lisa M; Holden, Sean B; Wojnar, David; Mulvey, Claire M; Christoforou, Andy; Groen, Arnoud; Trotter, Matthew W B; Kohlbacher, Oliver; Lilley, Kathryn S; Gatto, Laurent

    2016-05-01

    Sub-cellular localisation of proteins is an essential post-translational regulatory mechanism that can be assayed using high-throughput mass spectrometry (MS). These MS-based spatial proteomics experiments enable us to pinpoint the sub-cellular distribution of thousands of proteins in a specific system under controlled conditions. Recent advances in high-throughput MS methods have yielded a plethora of experimental spatial proteomics data for the cell biology community. Yet, there are many third-party data sources, such as immunofluorescence microscopy or protein annotations and sequences, which represent a rich and vast source of complementary information. We present a unique transfer learning classification framework that utilises a nearest-neighbour or support vector machine system, to integrate heterogeneous data sources to considerably improve on the quantity and quality of sub-cellular protein assignment. We demonstrate the utility of our algorithms through evaluation of five experimental datasets, from four different species in conjunction with four different auxiliary data sources to classify proteins to tens of sub-cellular compartments with high generalisation accuracy. We further apply the method to an experiment on pluripotent mouse embryonic stem cells to classify a set of previously unknown proteins, and validate our findings against a recent high resolution map of the mouse stem cell proteome. The methodology is distributed as part of the open-source Bioconductor pRoloc suite for spatial proteomics data analysis. PMID:27175778

  18. Spatial noise in microdisplays for near-to-eye applications

    NASA Astrophysics Data System (ADS)

    Hastings, Arthur R., Jr.; Draper, Russell S.; Wood, Michael V.; Fellowes, David A.

    2011-06-01

    Spatial noise in imaging systems has been characterized and its impact on image quality metrics has been addressed primarily with respect to the introduction of this noise at the sensor component. However, sensor fixed pattern noise is not the only source of fixed pattern noise in an imaging system. Display fixed pattern noise cannot be easily mitigated in processing and, therefore, must be addressed. In this paper, a thorough examination of the amount and the effect of display fixed pattern noise is presented. The specific manifestation of display fixed pattern noise is dependent upon the display technology. Utilizing a calibrated camera, US Army RDECOM CERDEC NVESD has developed a microdisplay (μdisplay) spatial noise data collection capability. Noise and signal power spectra were used to characterize the display signal to noise ratio (SNR) as a function of spatial frequency analogous to the minimum resolvable temperature difference (MRTD) of a thermal sensor. The goal of this study is to establish a measurement technique to characterize μdisplay limiting performance to assist in proper imaging system specification.

  19. Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics

    PubMed Central

    Breckels, Lisa M.; Holden, Sean B.; Wojnar, David; Mulvey, Claire M.; Christoforou, Andy; Groen, Arnoud; Trotter, Matthew W. B.; Kohlbacher, Oliver; Lilley, Kathryn S.; Gatto, Laurent

    2016-01-01

    Sub-cellular localisation of proteins is an essential post-translational regulatory mechanism that can be assayed using high-throughput mass spectrometry (MS). These MS-based spatial proteomics experiments enable us to pinpoint the sub-cellular distribution of thousands of proteins in a specific system under controlled conditions. Recent advances in high-throughput MS methods have yielded a plethora of experimental spatial proteomics data for the cell biology community. Yet, there are many third-party data sources, such as immunofluorescence microscopy or protein annotations and sequences, which represent a rich and vast source of complementary information. We present a unique transfer learning classification framework that utilises a nearest-neighbour or support vector machine system, to integrate heterogeneous data sources to considerably improve on the quantity and quality of sub-cellular protein assignment. We demonstrate the utility of our algorithms through evaluation of five experimental datasets, from four different species in conjunction with four different auxiliary data sources to classify proteins to tens of sub-cellular compartments with high generalisation accuracy. We further apply the method to an experiment on pluripotent mouse embryonic stem cells to classify a set of previously unknown proteins, and validate our findings against a recent high resolution map of the mouse stem cell proteome. The methodology is distributed as part of the open-source Bioconductor pRoloc suite for spatial proteomics data analysis. PMID:27175778

  20. Nonparametric Spatial Models for Extremes: Application to Extreme Temperature Data.

    PubMed

    Fuentes, Montserrat; Henry, John; Reich, Brian

    2013-03-01

    Estimating the probability of extreme temperature events is difficult because of limited records across time and the need to extrapolate the distributions of these events, as opposed to just the mean, to locations where observations are not available. Another related issue is the need to characterize the uncertainty in the estimated probability of extreme events at different locations. Although the tools for statistical modeling of univariate extremes are well-developed, extending these tools to model spatial extreme data is an active area of research. In this paper, in order to make inference about spatial extreme events, we introduce a new nonparametric model for extremes. We present a Dirichlet-based copula model that is a flexible alternative to parametric copula models such as the normal and t-copula. The proposed modelling approach is fitted using a Bayesian framework that allow us to take into account different sources of uncertainty in the data and models. We apply our methods to annual maximum temperature values in the east-south-central United States. PMID:24058280

  1. SOIL PHOSPHOROUS SPATIAL DISTRIBUTION IN PASTURES RECEIVING POULTRY LITTER APPLICATIONS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Environmentally-based P management strategies could be improved by delineating management zones incorporating the effects of landscape position on soil morphology, hydrology, and soil P distribution. Three farm pasture sites in SW Missouri receiving long-term poultry litter applications were sampled...

  2. In vivo Application of Short-lag Spatial Coherence and Harmonic Spatial Coherence Imaging in Fetal Ultrasound

    PubMed Central

    Kakkad, Vaibhav; Dahl, Jeremy; Ellestad, Sarah; Trahey, Gregg

    2014-01-01

    Fetal scanning is one of the most common applications of ultrasound imaging and serves as a source of vital information about maternal and fetal health. Visualization of clinically relevant structures, however, can be severely compromised in difficult-to-image patients due to poor resolution and the presence of high levels of acoustical noise or clutter. We have developed novel coherence-based beamforming methods called Short-Lag Spatial Coherence (SLSC) imaging and Harmonic Spatial Coherence imaging (HSCI) and applied them to suppress the effects of clutter in fetal imaging. This method is used to create images of the spatial coherence of the backscattered ultrasound as opposed to images of echo magnitude. We present the results of a patient study to assess the benefits of coherence-based beamforming in the context of first trimester fetal exams. Matched fundamental B-mode, SLSC, harmonic B-mode and HSCI images were generated using raw RF data collected on 11 volunteers in the first trimester of pregnancy. The images were compared for qualitative differences in image texture and target conspicuity as well as using quantitative imaging metrics such as SNR, CNR and contrast. SLSC and HSCI showed statistically significant improvements across all imaging metrics compared to B-mode and harmonic B-mode respectively. These improvements were greatest for poor quality B-mode images where contrast of anechoic targets was improved from 15 dB in fundamental B-mode to 27 dB in SLSC and 17 dB in harmonic B-mode to 30 dB in HSCI. CNR improved from 1.4 to 2.5 in the fundamental images and 1.4 to 3.1 in the harmonic case. These results exhibit the potential of coherence-based beamforming to improve image quality and target detectability, especially in high noise environments. PMID:25116292

  3. Application of geo-spatial technology in schistosomiasis modelling in Africa: a review.

    PubMed

    Manyangadze, Tawanda; Chimbari, Moses John; Gebreslasie, Michael; Mukaratirwa, Samson

    2015-01-01

    Schistosomiasis continues to impact socio-economic development negatively in sub-Saharan Africa. The advent of spatial technologies, including geographic information systems (GIS), Earth observation (EO) and global positioning systems (GPS) assist modelling efforts. However, there is increasing concern regarding the accuracy and precision of the current spatial models. This paper reviews the literature regarding the progress and challenges in the development and utilization of spatial technology with special reference to predictive models for schistosomiasis in Africa. Peer-reviewed papers identified through a PubMed search using the following keywords: geo-spatial analysis OR remote sensing OR modelling OR earth observation OR geographic information systems OR prediction OR mapping AND schistosomiasis AND Africa were used. Statistical uncertainty, low spatial and temporal resolution satellite data and poor validation were identified as some of the factors that compromise the precision and accuracy of the existing predictive models. The need for high spatial resolution of remote sensing data in conjunction with ancillary data viz. ground-measured climatic and environmental information, local presence/absence intermediate host snail surveys as well as prevalence and intensity of human infection for model calibration and validation are discussed. The importance of a multidisciplinary approach in developing robust, spatial data capturing, modelling techniques and products applicable in epidemiology is highlighted. PMID:26618307

  4. Parallelized genetic optimization of spatial light modulator addressing for diffractive applications.

    PubMed

    Haist, Tobias; Lingel, Christian; Adler, Rodolfo; Osten, Wolfgang

    2014-03-01

    We describe a new technique for optimizing the addressing of spatial light modulators in dynamic holographic applications. The method utilizes 200 times parallelization using imaging of subholograms in combination with genetic optimization. Compared to a fixed linear addressing curve for all different gratings, the diffraction efficiency can be improved by up to 25% for a Holoeye Pluto LCoS modulator. PMID:24663371

  5. Phase conjugation of mode scrambled optical beams Application to spatial recovery and interbeam temporal information exchange

    NASA Astrophysics Data System (ADS)

    Yahalom, Ram; Kyuma, Kazuo; Yariv, Amnon

    1987-03-01

    Coupling of temporal information between two beams is demonstrated using a combination of a multimode fiber and a photorefractive passive phase conjugation mirror. It is shown that the polarization and spatial properties are fully recovered but temporal information is exchanged. The theoretical explanation for these phenomena and possible applications are discussed.

  6. Progressive phase conjugation and its application in reconfigurable spatial-mode extraction and conversion

    NASA Astrophysics Data System (ADS)

    Okamoto, Atsushi; Maeda, Tomohiro; Hirasaki, Yuki; Tomita, Akihisa; Sato, Kunihiro

    2014-05-01

    We develop a new technology, which is referred to as progressive phase conjugation (PPC), in which phase conjugation is electrically performed without requiring a coherent reference beam by fusion using a reference-free spatial phase detection and spatial phase modulation. This method enables remote setting of a phase detector from the signal transmitter without an additional transmission line for the reference beam. It also enables realization of high-speed and dynamic wavefront compensation owing to its open-loop architecture using the single-shot phase detection method. Therefore, the PPC is applicable to a wide range of optical communication technologies, including the reconfigurable spatial-mode extraction and conversion of mode transmission in a multi-mode fiber (MMF). In our experiment, spatial modes are generated by directing a laser beam into a MMF with a 50-micron core diameter. At the output side of the optical fiber, the phase distributions of the spatial modes are detected using the reference-free phase detector constructed by combining a spatial filtering method with holographic diversity interferometry using two CCD imagers. Then, the phase conjugate distribution of the detected phase pattern is displayed on a LCOS-type SLM. We confirm that the PPC system can extract a specific mode pattern with a considerably low crosstalk of less than 1% by displaying the corresponding phase-conjugation pattern on the SLM. In addition, we demonstrated a reconfigurable spatial-mode conversion by the phase control technology using the SLM. By applying the spatial phase modulation to an optical beam incident on the SLM, the spatial mode of the output beam is flexibly changed.

  7. Assessing the quality of open spatial data for mobile location-based services research and applications

    NASA Astrophysics Data System (ADS)

    Ciepłuch, C.; Mooney, P.; Jacob, R.; Zheng, J.; Winstanely, A. C.

    2011-12-01

    New trends in GIS such as Volunteered Geographical Information (VGI), Citizen Science, and Urban Sensing, have changed the shape of the geoinformatics landscape. The OpenStreetMap (OSM) project provided us with an exciting, evolving, free and open solution as a base dataset for our geoserver and spatial data provider for our research. OSM is probably the best known and best supported example of VGI and user generated spatial content on the Internet. In this paper we will describe current results from the development of quality indicators for measures for OSM data. Initially we have analysed the Ireland OSM data in grid cells (5km) to gather statistical data about the completeness, accuracy, and fitness for purpose of the underlying spatial data. This analysis included: density of user contributions, spatial density of points and polygons, types of tags and metadata used, dominant contributors in a particular area or for a particular geographic feature type, etc. There greatest OSM activity and spatial data density is highly correlated with centres of large population. The ability to quantify and assess if VGI, such as OSM, is of sufficient quality for mobile mapping applications and Location-based services is critical to the future success of VGI as a spatial data source for these technologies.

  8. Hybrid modeling of spatial continuity for application to numerical inverse problems

    USGS Publications Warehouse

    Friedel, Michael J.; Iwashita, Fabio

    2013-01-01

    A novel two-step modeling approach is presented to obtain optimal starting values and geostatistical constraints for numerical inverse problems otherwise characterized by spatially-limited field data. First, a type of unsupervised neural network, called the self-organizing map (SOM), is trained to recognize nonlinear relations among environmental variables (covariates) occurring at various scales. The values of these variables are then estimated at random locations across the model domain by iterative minimization of SOM topographic error vectors. Cross-validation is used to ensure unbiasedness and compute prediction uncertainty for select subsets of the data. Second, analytical functions are fit to experimental variograms derived from original plus resampled SOM estimates producing model variograms. Sequential Gaussian simulation is used to evaluate spatial uncertainty associated with the analytical functions and probable range for constraining variables. The hybrid modeling of spatial continuity is demonstrated using spatially-limited hydrologic measurements at different scales in Brazil: (1) physical soil properties (sand, silt, clay, hydraulic conductivity) in the 42 km2 Vargem de Caldas basin; (2) well yield and electrical conductivity of groundwater in the 132 km2 fractured crystalline aquifer; and (3) specific capacity, hydraulic head, and major ions in a 100,000 km2 transboundary fractured-basalt aquifer. These results illustrate the benefits of exploiting nonlinear relations among sparse and disparate data sets for modeling spatial continuity, but the actual application of these spatial data to improve numerical inverse modeling requires testing.

  9. Research on spatial coding compressive spectral imaging and its applicability for rural survey

    NASA Astrophysics Data System (ADS)

    Chen, Yuheng; Ji, Yiqun; Zhou, Jiankang; Chen, Xinhua; Shen, Weimin

    Compressive spectral imaging combines traditional spectral imaging method with new concept of compressive sensing thus has the advantages such as reducing acquisition data amount, realizing snapshot imaging for large field of view and increasing image signal-to-noise and its preliminary application effectiveness has been explored by early usage on the occasions such as high-speed imaging and fluorescent imaging. In this paper, the application potentiality for spatial coding compressive spectral imaging technique on rural survey is revealed. The physical model for spatial coding compressive spectral imaging is built on which its data flow procession is analyzed and its data reconstruction issue is concluded. The existing sparse reconstruction methods are reviewed thus specific module based on the two-step iterative shrinkage/thresholding algorithm is built so as to execute the imaging data reconstruction. The simulating imaging experiment based on AVIRIS visible band data of a specific selected rural scene is carried out. The spatial identification and spectral featuring extraction capacity for different ground species are evaluated by visual judgment of both single band image and spectral curve. The data fidelity evaluation parameters (RMSE and PSNR) are put forward so as to verify the data fidelity maintaining ability of this compressive imaging method quantitatively. The application potentiality of spatial coding compressive spectral imaging on rural survey, crop monitoring, vegetation inspection and further agricultural development demand is verified in this paper.

  10. Design of data warehouse in teaching state based on OLAP and data mining

    NASA Astrophysics Data System (ADS)

    Zhou, Lijuan; Wu, Minhua; Li, Shuang

    2009-04-01

    The data warehouse and the data mining technology is one of information technology research hot topics. At present the data warehouse and the data mining technology in aspects and so on commercial, financial industry as well as enterprise's production, market marketing obtained the widespread application, but is relatively less in educational fields' application. Over the years, the teaching and management have been accumulating large amounts of data in colleges and universities, while the data can not be effectively used, in the light of social needs of the university development and the current status of data management, the establishment of data warehouse in university state, the better use of existing data, and on the basis dealing with a higher level of disposal --data mining are particularly important. In this paper, starting from the decision-making needs design data warehouse structure of university teaching state, and then through the design structure and data extraction, loading, conversion create a data warehouse model, finally make use of association rule mining algorithm for data mining, to get effective results applied in practice. Based on the data analysis and mining, get a lot of valuable information, which can be used to guide teaching management, thereby improving the quality of teaching and promoting teaching devotion in universities and enhancing teaching infrastructure. At the same time it can provide detailed, multi-dimensional information for universities assessment and higher education research.

  11. Assessing spatial resolution versus sensitivity from laser speckle contrast imaging: application to frequency analysis.

    PubMed

    Bricq, Stéphanie; Mahé, Guillaume; Rousseau, David; Humeau-Heurtier, Anne; Chapeau-Blondeau, François; Varela, Julio Rojas; Abraham, Pierre

    2012-10-01

    For blood perfusion monitoring, laser speckle contrast (LSC) imaging is a recent non-contact technique that has the characteristic of delivering noise-like speckled images. To exploit LSC images for quantitative physiological measurements, we developed an approach that implements controlled spatial averaging to reduce the detrimental impact of the noise and improve measurement sensitivity. By this approach, spatial resolution and measurement sensitivity can be traded-off in a flexible way depending on the quantitative prospect of the study. As an application, detectability of the cardiac activity from LSC images of forearm using power spectrum analysis is studied through the construction of spatial activity maps offering a window on the blood flow perfusion and its regional distribution. Comparisons with results obtained with signals of laser Doppler flowmetry probes are performed. PMID:22644256

  12. [Application of spatial relative risk estimation in communicable disease risk evaluation].

    PubMed

    Zhang, Yewu; Guo, Qing; Wang, Xiaofeng; Yu, Meng; Su, Xuemei; Dong, Yan; Zhang, Chunxi

    2015-05-01

    This paper summaries the application of adaptive kernel density algorithm in the spatial relative risk estimation of communicable diseases by using the reported data of infectious diarrhea (other than cholera, dysentery, typhoid and paratyphoid) in Ludian county and surrounding area in Yunnan province in 2013. Statistically significant fluctuations in an estimated risk function were identified through the use of asymptotic tolerance contours, and finally these data were visualized though disease mapping. The results of spatial relative risk estimation and disease mapping showed that high risk areas were in southeastern Shaoyang next to Ludian. Therefore, the spatial relative risk estimation of disease by using adaptive kernel density algorithm and disease mapping technique is a powerful method in identifying high risk population and areas. PMID:26080648

  13. Existence and continuity of bi-spatial random attractors and application to stochastic semilinear Laplacian equations

    NASA Astrophysics Data System (ADS)

    Li, Yangrong; Gu, Anhui; Li, Jia

    2015-01-01

    A concept of a bi-spatial random attractor for a random dynamical system is introduced. A unified result about existence and upper semi-continuity for a family of bi-spatial random attractors is obtained if a family of random systems is convergent, uniformly absorbing in an initial space and uniformly omega-compact in both initial and terminate spaces. The upper semi-continuity result improves all existing results even for single-spatial attractors. As an application of the abstract result, it is shown that every semilinear Laplacian equation on the entire space perturbed by a multiplicative and stochastic noise possesses an (L2, Lq)-random attractor with q > 2. Moreover, it is proved that the family of obtained attractors is upper semi-continuous at any density of noises and the family of attractors for the corresponding compact systems is both upper and lower semi-continuous at infinity under the topology of both spaces.

  14. Simulation of spatially evolving turbulence and the applicability of Taylor's hypothesis in compressible flow

    NASA Technical Reports Server (NTRS)

    Lee, Sangsan; Lele, Sanjiva K.; Moin, Parviz

    1992-01-01

    For the numerical simulation of inhomogeneous turbulent flows, a method is developed for generating stochastic inflow boundary conditions with a prescribed power spectrum. Turbulence statistics from spatial simulations using this method with a low fluctuation Mach number are in excellent agreement with the experimental data, which validates the procedure. Turbulence statistics from spatial simulations are also compared to those from temporal simulations using Taylor's hypothesis. Statistics such as turbulence intensity, vorticity, and velocity derivative skewness compare favorably with the temporal simulation. However, the statistics of dilatation show a significant departure from those obtained in the temporal simulation. To directly check the applicability of Taylor's hypothesis, space-time correlations of fluctuations in velocity, vorticity, and dilatation are investigated. Convection velocities based on vorticity and velocity fluctuations are computed as functions of the spatial and temporal separations. The profile of the space-time correlation of dilatation fluctuations is explained via a wave propagation model.

  15. Application of a Spatial Intelligent Decision System on Self-Rated Health Status Estimation.

    PubMed

    Calzada, Alberto; Liu, Jun; Wang, Hui; Nugent, Chris; Martinez, Luis

    2015-11-01

    Self- assessed general health status is a commonly-used survey technique since it can be used as a predictor for several public health risks such as mortality, deprivation, and fear of crime or poverty. Therefore, it is a useful alternative measure to help assessing the public health situation of a neighborhood or town, and can be utilized by authorities in many decision support situations related to public health, budget allocation and general policy-making, among others. It can be considered as spatial decision problems, since both data location and spatial relationships make a prominent impact during the decision making process. This paper utilizes a recently-developed spatial intelligent decision system, named, Spatial RIMER(+), to model the self-rated health estimation decision problem using real data in the areas of Northern Ireland, UK. The goal is to learn from past or partial observations on self-rated health status to predict its future or neighborhood behavior and reference it in the map. Three scenarios in line of this goal are discussed in details, i.e., estimation of unknown, downscaling, and predictions over time. They are used to demonstrate the flexibility and applicability of the spatial decision support system and their positive capabilities in terms of accuracy, efficiency and visualization. PMID:26330224

  16. The application of spatial analysis based on rough set theory and hierarchical analysis

    NASA Astrophysics Data System (ADS)

    Lin, Zhiyong; Liang, Shuang

    2009-10-01

    As the development of the theory and technology of geographical information, Geographical Information System (GIS) has been widely applied in variety of industries. It usually refers to the analytical problem of multi-factor in GIS thematic application. In this field, the determination of factors' weight is a common and important problem. It actually deals the data when processing the spatial analysis applying GIS, for example, according to the importance of some factor, assign some value to it then process spatial overlay operation using the values and finally conclude some evaluation or result. In reality, there are many factors that affect the some kind of evaluation. Usually, we choose several more important factors as the evaluation criterion in order to make convenient for research. Then we assign some weight values to these factors and process spatial analysis then conclude some decision or evaluation to make support for decision-making. We can choose the factors that can make more impaction on the evaluation or decision-making using the method of Analytical Hierarchy Process (AHP). However, it has strong subjectivity of the factors' weight values assigned by this method. Rough set theory, which can effectively remove the impaction made by artificial factors, can make up the deficiency. It can make the spatial analysis more objective and more effective combining the two methods in GIS spatial analysis.

  17. Jackson State University's Center for Spatial Data Research and Applications: New facilities and new paradigms

    NASA Technical Reports Server (NTRS)

    Davis, Bruce E.; Elliot, Gregory

    1989-01-01

    Jackson State University recently established the Center for Spatial Data Research and Applications, a Geographical Information System (GIS) and remote sensing laboratory. Taking advantage of new technologies and new directions in the spatial (geographic) sciences, JSU is building a Center of Excellence in Spatial Data Management. New opportunities for research, applications, and employment are emerging. GIS requires fundamental shifts and new demands in traditional computer science and geographic training. The Center is not merely another computer lab but is one setting the pace in a new applied frontier. GIS and its associated technologies are discussed. The Center's facilities are described. An ARC/INFO GIS runs on a Vax mainframe, with numerous workstations. Image processing packages include ELAS, LIPS, VICAR, and ERDAS. A host of hardware and software peripheral are used in support. Numerous projects are underway, such as the construction of a Gulf of Mexico environmental data base, development of AI in image processing, a land use dynamics study of metropolitan Jackson, and others. A new academic interdisciplinary program in Spatial Data Management is under development, combining courses in Geography and Computer Science. The broad range of JSU's GIS and remote sensing activities is addressed. The impacts on changing paradigms in the university and in the professional world conclude the discussion.

  18. Transmission Phase Holography: Spatial-Mode Filter Design for Quantum Information Applications

    NASA Astrophysics Data System (ADS)

    Hillmer, Rachel; Barreiro, Julio; Kwiat, Paul

    2007-03-01

    Photon spatial modes offer access to promising new applications in quantum information because they provide a higher-dimensional basis set than the usual two-dimensional one associated with polarization. Downconversion experiments have demonstrated spatial-mode entanglement [1], and even hyperentanglement in polarization and spatial mode [2]. However optical elements currently lack the refinement necessary to perform efficient, high-fidelity operations using spatial modes. Holographic filters for Laguerre-Gaussian and Hermite-Gaussian laser modes can act as modes converters, and have long been studied (under the terms ``modans'' and ``kinoforms'') for use in electrical engineering applications [3,4]. Her we present analytical refinements and optimizations of these techniques, with predicted mode fidelities over 95% and diffraction efficiencies up to 98%. Results of our experimental implementions of these solutions are presented. [1] Walborn, S.P, et al, ``Entanglement and conservation of orbital angular momentum in spontaneous parametric down-conversion,'' Phys. Rev. A 69, 023811 (2004); [2] Barreiro, J.T. et al, ``Generation of Hyperentangled Photon Pairs,'' Phys. Rev. Lett. 95, 260501 (2005); [3] Soifer, V.A., ``Methods of Computer Design of Diffractive Optical Elements,'' John Wiley & Sons, Inc., 2002; [4] Golub, M. and Soifer, V., ``Laser Beam Mode Selection by Computer Generated Holograms,'' CRC Press, Inc., 1994.

  19. A spatially filtered multilevel model to account for spatial dependency: application to self-rated health status in South Korea

    PubMed Central

    2014-01-01

    Background This study aims to suggest an approach that integrates multilevel models and eigenvector spatial filtering methods and apply it to a case study of self-rated health status in South Korea. In many previous health-related studies, multilevel models and single-level spatial regression are used separately. However, the two methods should be used in conjunction because the objectives of both approaches are important in health-related analyses. The multilevel model enables the simultaneous analysis of both individual and neighborhood factors influencing health outcomes. However, the results of conventional multilevel models are potentially misleading when spatial dependency across neighborhoods exists. Spatial dependency in health-related data indicates that health outcomes in nearby neighborhoods are more similar to each other than those in distant neighborhoods. Spatial regression models can address this problem by modeling spatial dependency. This study explores the possibility of integrating a multilevel model and eigenvector spatial filtering, an advanced spatial regression for addressing spatial dependency in datasets. Methods In this spatially filtered multilevel model, eigenvectors function as additional explanatory variables accounting for unexplained spatial dependency within the neighborhood-level error. The specification addresses the inability of conventional multilevel models to account for spatial dependency, and thereby, generates more robust outputs. Results The findings show that sex, employment status, monthly household income, and perceived levels of stress are significantly associated with self-rated health status. Residents living in neighborhoods with low deprivation and a high doctor-to-resident ratio tend to report higher health status. The spatially filtered multilevel model provides unbiased estimations and improves the explanatory power of the model compared to conventional multilevel models although there are no changes in the

  20. High-Q polymer resonators with spatially controlled photo-functionalization for biosensing applications

    NASA Astrophysics Data System (ADS)

    Beck, Torsten; Mai, Martin; Grossmann, Tobias; Wienhold, Tobias; Hauser, Mario; Mappes, Timo; Kalt, Heinz

    2013-03-01

    We demonstrate the applicability of polymeric whispering gallery mode resonators fabricated on silicon as biosensors. Optical measurements on the passive resonators in the visible spectral range yield Q-factors as high as 1.3×107. Local, covalent surface functionalization, is achieved by spatially controlled UV-exposure of a derivative of the photoreactive crosslinker benzophenone. Protein detection is shown using the specific binding of the biotin-streptavidin system.

  1. Spatially controlled electro-stimulated DNA adsorption and desorption for biochip applications.

    PubMed

    Hook, Andrew L; Thissen, Helmut; Hayes, Jason P; Voelcker, Nicolas H

    2006-05-15

    The manipulation of biomolecules at solid/liquid interfaces is important for the enhanced performance of a number of biomedical devices, including biochips. This study focuses on the spatial control of surface interactions of DNA as well as the electro-stimulated adsorption and desorption of DNA by appropriate surface modification of highly doped p-type silicon. Surface modification by plasma polymerisation of allylamine resulted in a surface that supported DNA adsorption and sustained cell attachment. Subsequent high-density grafting of poly(ethylene oxide) formed a low fouling layer resistant to biomolecule adsorption and cell attachment. Spatially controlled excimer laser ablation of the surface produced patterns of re-exposed plasma polymer with high-resolution. On patterned surfaces, preferential electro-stimulated adsorption of DNA to the allylamine plasma polymer surface and subsequent desorption by the application of a negative bias was observed. Furthermore, the concept presented here was investigated for use in transfection chips. Cell culture experiments with human embryonic kidney cells, using the expression of green fluorescent protein as a reporter, demonstrated efficient and controlled transfection of cells. Electro-stimulated desorption of DNA was shown to yield significantly enhanced solid phase transfection efficiencies to values of up to 30%. The ability to spatially control DNA adsorption combined with the ability to control the binding and release of DNA by application of a controlled voltage enables an advanced level of control over DNA bioactivity on solid substrates and lends itself to biochip applications. PMID:16303297

  2. Displaying R spatial statistics on Google dynamic maps with web applications created by Rwui

    PubMed Central

    2012-01-01

    Background The R project includes a large variety of packages designed for spatial statistics. Google dynamic maps provide web based access to global maps and satellite imagery. We describe a method for displaying directly the spatial output from an R script on to a Google dynamic map. Methods This is achieved by creating a Java based web application which runs the R script and then displays the results on the dynamic map. In order to make this method easy to implement by those unfamiliar with programming Java based web applications, we have added the method to the options available in the R Web User Interface (Rwui) application. Rwui is an established web application for creating web applications for running R scripts. A feature of Rwui is that all the code for the web application being created is generated automatically so that someone with no knowledge of web programming can make a fully functional web application for running an R script in a matter of minutes. Results Rwui can now be used to create web applications that will display the results from an R script on a Google dynamic map. Results may be displayed as discrete markers and/or as continuous overlays. In addition, users of the web application may select regions of interest on the dynamic map with mouse clicks and the coordinates of the region of interest will automatically be made available for use by the R script. Conclusions This method of displaying R output on dynamic maps is designed to be of use in a number of areas. Firstly it allows statisticians, working in R and developing methods in spatial statistics, to easily visualise the results of applying their methods to real world data. Secondly, it allows researchers who are using R to study health geographics data, to display their results directly onto dynamic maps. Thirdly, by creating a web application for running an R script, a statistician can enable users entirely unfamiliar with R to run R coded statistical analyses of health geographics

  3. Application of Alignment Methodologies to Spatial Ontologies in the Hydro Domain

    NASA Astrophysics Data System (ADS)

    Lieberman, J. E.; Cheatham, M.; Varanka, D.

    2015-12-01

    Ontologies are playing an increasing role in facilitating mediation and translation between datasets representing diverse schemas, vocabularies, or knowledge communities. This role is relatively straightforward when there is one ontology comprising all relevant common concepts that can be mapped to entities in each dataset. Frequently, one common ontology has not been agreed to. Either each dataset is represented by a distinct ontology, or there are multiple candidates for commonality. Either the one most appropriate (expressive, relevant, correct) ontology must be chosen, or else concepts and relationships matched across multiple ontologies through an alignment process so that they may be used in concert to carry out mediation or other semantic operations. A resulting alignment can be effective to the extent that entities in in the ontologies represent differing terminology for comparable conceptual knowledge. In cases such as spatial ontologies, though, ontological entities may also represent disparate conceptualizations of space according to the discernment methods and application domains on which they are based. One ontology's wetland concept may overlap in space with another ontology's recharge zone or wildlife range or water feature. In order to evaluate alignment with respect to spatial ontologies, alignment has been applied to a series of ontologies pertaining to surface water that are used variously in hydrography (characterization of water features), hydrology (study of water cycling), and water quality (nutrient and contaminant transport) application domains. There is frequently a need to mediate between datasets in each domain in order to develop broader understanding of surface water systems, so there is a practical as well theoretical value in the alignment. From a domain expertise standpoint, the ontologies under consideration clearly contain some concepts that are spatially as well as conceptually identical and then others with less clear

  4. A Visible, Spatially-Modulated Imaging Fourier Transform Spectrometer (SMIFTS) for Astronomical Applications

    NASA Astrophysics Data System (ADS)

    Rafert, J. B.; Holbert, E. T.; Rusk, E. T.; Durham, S. E.; Caudill, E.; Keating, D.; Newby, H.

    1992-12-01

    We have constructed several visible, Spatially-Modulated Imaging Fourier Transform Spectrometers (SMIFTS) for spatially resolved spectral imaging in the visible wavelength region based on work by several authors including Yoshihara and Kitade (1967), Okamoto et al. (1984), Barnes (1985) and Smith and Schempp (1991). Our spectrometers require no moving parts, are compact and enjoy a number of advantages over the other spectral data collection technologies. The unique combination of characteristics define an important niche for astronomical, remote sensing, and reconnaissance spectral data acquisition. Our SMIFTS simultaneously acquires hundreds or thousands of spectral bands for hundreds or thousands of spectral channesl. This type of sensor has been called a "hyperspectral" sensor to emphasize the major quantitative difference between this type of sensor and multispectral imagers which collect only a few spectral bands. The SMIFTS consists of input optics (a telescope), a field limiting aperture, a beamsplitter which divides the input beam into two paths, two mirrors which redirect the split beams through the same path, a collimating lens which forms the interferogram of the input aperture on the detector plane, and a cylindrical imaging lens. Thus on the detector array one axis contains spatial information and the other axis contains the spectral information for each point of the spatial axis. The result of this arrangement is that each row of the detector array contains the interferogram of the corresponding point on the aperture or slit. This slit can be fixed upon the target, or the slit can be scanned across the target to build up a second axis of spatial information resulting in a data set with four dimensions: two spatial, one spectral, and one temporal. We present sample data for both astronomical and remote sensing applications taken with the Malabar SMIFTS. Barnes, T.H. "Photodiode Array Fourier Transform Spectrometer with Improved Dynamic Range", Appl

  5. The market value of cultural heritage in urban areas: an application of spatial hedonic pricing

    NASA Astrophysics Data System (ADS)

    Lazrak, Faroek; Nijkamp, Peter; Rietveld, Piet; Rouwendal, Jan

    2014-01-01

    The current literature often values intangible goods like cultural heritage by applying stated preference methods. In recent years, however, the increasing availability of large databases on real estate transactions and listed prices has opened up new research possibilities and has reduced various existing barriers to applications of conventional (spatial) hedonic analysis to the real estate market. The present paper provides one of the first applications using a spatial autoregressive model to investigate the impact of cultural heritage—in particular, listed buildings and historic-cultural sites (or historic landmarks)—on the value of real estate in cities. In addition, this paper suggests a novel way of specifying the spatial weight matrix—only prices of sold houses influence current price—in identifying the spatial dependency effects between sold properties. The empirical application in the present study concerns the Dutch urban area of Zaanstad, a historic area for which over a long period of more than 20 years detailed information on individual dwellings, and their market prices are available in a GIS context. In this paper, the effect of cultural heritage is analysed in three complementary ways. First, we measure the effect of a listed building on its market price in the relevant area concerned. Secondly, we investigate the value that listed heritage has on nearby property. And finally, we estimate the effect of historic-cultural sites on real estate prices. We find that, to purchase a listed building, buyers are willing to pay an additional 26.9 %, while surrounding houses are worth an extra 0.28 % for each additional listed building within a 50-m radius. Houses sold within a conservation area appear to gain a premium of 26.4 % which confirms the existence of a `historic ensemble' effect.

  6. Instability in spatial error models: an application to the hypothesis of convergence in the European case

    NASA Astrophysics Data System (ADS)

    Mur, Jesús; López, Fernando; Angulo, Ana

    2010-09-01

    This paper focuses on the hypothesis of stability in the mechanisms of spatial dependence that are usually employed in spatial econometric models. We propose a specification strategy for which the first step is to solve a local estimation algorithm, called the Zoom estimation. The aim of this stage is to detect problems of heterogeneity in the parameters and to identify the regimes. Then we resort to a battery of formal Lagrange Multipliers to test the assumption of stability in the processes of spatial dependence. The alternative hypothesis consists of the existence of several regimes in these parameters. A small Monte Carlo serves to confirm the behaviour of this strategy in a context of finite size samples. As an illustration, we solve an application to the case of the hypothesis of convergence for the per capita income in the European regions. Our results reveal the existence of a strong Centre-Periphery dichotomy in which instability extends to all the elements (coefficients of regression as well as parameters of spatial dependence) that intervene in a classical conditional β-convergence model.

  7. Binomial tau-leap spatial stochastic simulation algorithm for applications in chemical kinetics.

    PubMed

    Marquez-Lago, Tatiana T; Burrage, Kevin

    2007-09-14

    In cell biology, cell signaling pathway problems are often tackled with deterministic temporal models, well mixed stochastic simulators, and/or hybrid methods. But, in fact, three dimensional stochastic spatial modeling of reactions happening inside the cell is needed in order to fully understand these cell signaling pathways. This is because noise effects, low molecular concentrations, and spatial heterogeneity can all affect the cellular dynamics. However, there are ways in which important effects can be accounted without going to the extent of using highly resolved spatial simulators (such as single-particle software), hence reducing the overall computation time significantly. We present a new coarse grained modified version of the next subvolume method that allows the user to consider both diffusion and reaction events in relatively long simulation time spans as compared with the original method and other commonly used fully stochastic computational methods. Benchmarking of the simulation algorithm was performed through comparison with the next subvolume method and well mixed models (MATLAB), as well as stochastic particle reaction and transport simulations (CHEMCELL, Sandia National Laboratories). Additionally, we construct a model based on a set of chemical reactions in the epidermal growth factor receptor pathway. For this particular application and a bistable chemical system example, we analyze and outline the advantages of our presented binomial tau-leap spatial stochastic simulation algorithm, in terms of efficiency and accuracy, in scenarios of both molecular homogeneity and heterogeneity. PMID:17867731

  8. Quantitative characterization of the spatial distribution of particles in materials: Application to materials processing

    NASA Technical Reports Server (NTRS)

    Parse, Joseph B.; Wert, J. A.

    1991-01-01

    Inhomogeneities in the spatial distribution of second phase particles in engineering materials are known to affect certain mechanical properties. Progress in this area has been hampered by the lack of a convenient method for quantitative description of the spatial distribution of the second phase. This study intends to develop a broadly applicable method for the quantitative analysis and description of the spatial distribution of second phase particles. The method was designed to operate on a desktop computer. The Dirichlet tessellation technique (geometrical method for dividing an area containing an array of points into a set of polygons uniquely associated with the individual particles) was selected as the basis of an analysis technique implemented on a PC. This technique is being applied to the production of Al sheet by PM processing methods; vacuum hot pressing, forging, and rolling. The effect of varying hot working parameters on the spatial distribution of aluminum oxide particles in consolidated sheet is being studied. Changes in distributions of properties such as through-thickness near-neighbor distance correlate with hot-working reduction.

  9. [Application of Land-use Regression Models in Spatial-temporal Differentiation of Air Pollution].

    PubMed

    Wu, Jian-sheng; Xie, Wu-dan; Li, Jia-cheng

    2016-02-15

    With the rapid development of urbanization, industrialization and motorization, air pollution has become one of the most serious environmental problems in our country, which has negative impacts on public health and ecological environment. LUR model is one of the common methods simulating spatial-temporal differentiation of air pollution at city scale. It has broad application in Europe and North America, but not really in China. Based on many studies at home and abroad, this study started with the main steps to develop LUR model, including obtaining the monitoring data, generating variables, developing models, model validation and regression mapping. Then a conclusion was drawn on the progress of LUR models in spatial-temporal differentiation of air pollution. Furthermore, the research focus and orientation in the future were prospected, including highlighting spatial-temporal differentiation, increasing classes of model variables and improving the methods of model development. This paper was aimed to popularize the application of LUR model in China, and provide a methodological basis for human exposure, epidemiologic study and health risk assessment. PMID:27363125

  10. Spatial variability of soil potassium in sugarcane areas subjected to the application of vinasse.

    PubMed

    De Carvalho, Laércio A; Meurer, Ismael; Da Silva Junior, Carlos A; Santos, Cristiane F B; Libardi, Paulo L

    2014-12-01

    When deposited on land the vinasse can promote improvement in fertility, however, often fertilizer application occurs in areas considered homogeneous, without taking into account the variability of the soil. The objective of this study was to evaluate the effect of vinasse application on potassium content in two classes of soils cultivated with sugarcane, and characterize the spatial variability of soil using geostatistical techniques. In the 2010 and 2011 crop year, soil samples were collected from an experimental grid at 0-0.2 and 0.2-0.4 m depth in three soils cultivated with sugarcane, totaling 90 samplings in each grid, for the determination of pH, calcium (Ca), magnesium (Mg), potassium (K), phosphorus (P), aluminum (Al) and potential acidity (H + Al). The data have been submitted to analysis of descriptive statistics and the K attribute was subjected to geostatistical analysis. The coefficient of variation indicated medium and high variability of K for the three soils. The results showed that the spatial dependence of K increased in depth to FRce and decreased to PHlv, indicating that the attribute could have followed the pattern of distribution of clay in depth. The investigation of the spatial variability of K on the surface and subsurface soils provided the definition of management zones with different levels of fertility, which can be organized into sub-areas for a more efficient management of the resources and the environment. PMID:25590735

  11. Applications of Spatial Technology in Schistosomiasis Control Programme in The People's Republic of China.

    PubMed

    Wang, X-Y; He, J; Yang, K; Liang, S

    2016-01-01

    Schistosomiasis, as the important parasitic disease, has caused serious threats to human health globally. The People's Republic of China has acquired significant achievements based on large-scale interventions and innovational technology. The spatial technology was introduced in 1980s and widely used in the study and control of schistosomiasis in The People's Republic of China. This chapter reviews the progress and application of spatial technology in schistosomiasis control by analysing the spatiotemporal pattern of and the impact of ecological changes on schistosomiasis transmission, which have provided the information to design and select the control strategy, and assisted the establishment of the monitoring and early warning system in The People's Republic of China, especially in the marshland and mountainous regions. PMID:27137446

  12. Transformative Relation of Kinematical Descriptive Quantities Defined by Different Spatial Referential Frame, Its Property and Application

    NASA Astrophysics Data System (ADS)

    Luo, Ji

    2012-08-01

    Quantitative transformations between corresponding kinetic quantities defined by any two spatial referential frames, whose relative kinematics relations (purely rotational and translational movement) are known, are presented based on necessarily descriptive definitions of the fundamental concepts (instant, time, spatial referential frame that distinguishes from Maths. Coordination, physical point) had being clarified by directly empirical observation with artificially descriptive purpose. Inductive investigation of the transformation reveals that all physical quantities such as charge, temperature, time, volume, length, temporal rate of the quantities and relations like temporal relation between signal source and observer as such are independent to spatial frames transformation except above kinematical quantities transformations, kinematics related dynamics such as Newton ’ s second law existing only in inertial frames and exchange of kinetic energy of mass being valid only in a selected inertial frame. From above bas is, we demonstrate a series of inferences and applications such as phase velocity of light being direct respect to medium (including vacuum) rather than to the frame, using spatial referential frame to describe any measurable field (electric field, magnetic field, gravitational field) and the field ’ s variation; and have tables to contrast and evaluate all aspects of those hypotheses related with spacetime such as distorted spacetime around massive stellar, four dimension spacetime, gravitational time dilation and non - Euclid geometry with new one. The demonstration strongly suggests all the hypotheses are invalid in capable tested concepts ’ meaning and relations. The conventional work on frame transformation and its property, hypothesized by Voigt, Heaviside, Lorentz, Poincare and Einstein a century ago with some mathematical speculation lacking rigorous definition of the fundamental concepts such as instant, time, spatial reference

  13. High dimensional spatial modeling of extremes with applications to United States Rainfalls

    NASA Astrophysics Data System (ADS)

    Zhou, Jie

    2007-12-01

    data sets with extreme value distributions involved. One of the main outcomes of this model is for producing N-year return values and return years for a given value for precipitation at a single location given climate model projections based on a grid. This is very important, because in many applications, detailed precipitation information on pointwise locations is more important that predictions averaged over grids. The second model can be applied to those large data sets and is based on transformed Gaussian processes. These processes are thresholded due to the emphasis on rainfall extremes. Keywords. Block Circulant Matrix; Extreme value theory; Fast Fourier Transform; Generalized Linear Mixed Model; Kriging; Markov Chain Monte Carlo; Spectral Representation; Spatial statistics

  14. Scalable digital spatial light modulator-micromesh heterostructures for real time wave optical applications.

    PubMed

    Jeong, Hoon; Choi, Jaewu

    2014-09-22

    For large-scale real time wave optical applications, we propose and demonstrate scalable simple digital spatial light modulator (SLM)-micromesh (μM) heterostructures, which fully harness ubiquitous well developed consumer information displays for real time large-scale SLMs and advanced patterning technologies for promoting the wave optical properties of SLMs of any size. Weakly diffractive projection mode large-scale SLMs with poor demultiplexity are transformed to highly diffractive mode heterostructures with fine patterned micromeshes as efficient demultiplexers or wave optical promoters. As a result, diffraction efficiency, diffraction angle, demultiplexity, multiplexity, reconstructed image quality and numbers of visibly reconstructed images largely increase even though the pixel pitches of the employed SLMs are many orders of magnitude larger than the wavelength of the illuminating light. The approach shown in this study can be applicable even for any sized weakly diffractive SLMs, and can simultaneously increase the effective spatial bandwidth and the physical dimension required for their wave optical applications. This can't be achieved by presently available SLMs alone. PMID:25321757

  15. Cherenkov detectors for spatial imaging applications using discrete-energy photons

    NASA Astrophysics Data System (ADS)

    Rose, Paul B.; Erickson, Anna S.

    2016-08-01

    Cherenkov detectors can offer a significant advantage in spatial imaging applications when excellent timing response, low noise and cross talk, large area coverage, and the ability to operate in magnetic fields are required. We show that an array of Cherenkov detectors with crude energy resolution coupled with monochromatic photons resulting from a low-energy nuclear reaction can be used to produce a sharp image of material while providing large and inexpensive detector coverage. The analysis of the detector response to relative transmission of photons with various energies allows for reconstruction of material's effective atomic number further aiding in high-Z material identification.

  16. Application of Image Analysis for Characterization of Spatial Arrangements of Features in Microstructure

    NASA Technical Reports Server (NTRS)

    Louis, Pascal; Gokhale, Arun M.

    1995-01-01

    A number of microstructural processes are sensitive to the spatial arrangements of features in microstructure. However, very little attention has been given in the past to the experimental measurements of the descriptors of microstructural distance distributions due to the lack of practically feasible methods. We present a digital image analysis procedure to estimate the micro-structural distance distributions. The application of the technique is demonstrated via estimation of K function, radial distribution function, and nearest-neighbor distribution function of hollow spherical carbon particulates in a polymer matrix composite, observed in a metallographic section.

  17. Application of spatial frequency response as a criterion for evaluating thermal imaging camera performance

    NASA Astrophysics Data System (ADS)

    Lock, Andrew; Amon, Francine

    2008-04-01

    Police, firefighters, and emergency medical personnel are examples of first responders that are utilizing thermal imaging cameras in a very practical way every day. However, few performance metrics have been developed to assist first responders in evaluating the performance of thermal imaging technology. This paper describes one possible metric for evaluating spatial resolution using an application of Spatial Frequency Response (SFR) calculations for thermal imaging. According to ISO 12233, the SFR is defined as the integrated area below the Modulation Transfer Function (MTF) curve derived from the discrete Fourier transform of a camera image representing a knife-edge target. This concept is modified slightly for use as a quantitative analysis of the camera's performance by integrating the area between the MTF curve and the camera's characteristic nonuniformity, or noise floor, determined at room temperature. The resulting value, which is termed the Effective SFR, can then be compared with a spatial resolution value obtained from human perception testing of task specific situations to determine the acceptability of the performance of thermal imaging cameras. The testing procedures described herein are being developed as part of a suite of tests for possible inclusion into a performance standard on thermal imaging cameras for first responders.

  18. Spatial-scanning hyperspectral imaging probe for bio-imaging applications

    NASA Astrophysics Data System (ADS)

    Lim, Hoong-Ta; Murukeshan, Vadakke Matham

    2016-03-01

    The three common methods to perform hyperspectral imaging are the spatial-scanning, spectral-scanning, and snapshot methods. However, only the spectral-scanning and snapshot methods have been configured to a hyperspectral imaging probe as of today. This paper presents a spatial-scanning (pushbroom) hyperspectral imaging probe, which is realized by integrating a pushbroom hyperspectral imager with an imaging probe. The proposed hyperspectral imaging probe can also function as an endoscopic probe by integrating a custom fabricated image fiber bundle unit. The imaging probe is configured by incorporating a gradient-index lens at the end face of an image fiber bundle that consists of about 50 000 individual fiberlets. The necessary simulations, methodology, and detailed instrumentation aspects that are carried out are explained followed by assessing the developed probe's performance. Resolution test targets such as United States Air Force chart as well as bio-samples such as chicken breast tissue with blood clot are used as test samples for resolution analysis and for performance validation. This system is built on a pushbroom hyperspectral imaging system with a video camera and has the advantage of acquiring information from a large number of spectral bands with selectable region of interest. The advantages of this spatial-scanning hyperspectral imaging probe can be extended to test samples or tissues residing in regions that are difficult to access with potential diagnostic bio-imaging applications.

  19. A Novel Artificial Immune Algorithm for Spatial Clustering with Obstacle Constraint and Its Applications

    PubMed Central

    Sun, Liping; Luo, Yonglong; Ding, Xintao; Zhang, Ji

    2014-01-01

    An important component of a spatial clustering algorithm is the distance measure between sample points in object space. In this paper, the traditional Euclidean distance measure is replaced with innovative obstacle distance measure for spatial clustering under obstacle constraints. Firstly, we present a path searching algorithm to approximate the obstacle distance between two points for dealing with obstacles and facilitators. Taking obstacle distance as similarity metric, we subsequently propose the artificial immune clustering with obstacle entity (AICOE) algorithm for clustering spatial point data in the presence of obstacles and facilitators. Finally, the paper presents a comparative analysis of AICOE algorithm and the classical clustering algorithms. Our clustering model based on artificial immune system is also applied to the case of public facility location problem in order to establish the practical applicability of our approach. By using the clone selection principle and updating the cluster centers based on the elite antibodies, the AICOE algorithm is able to achieve the global optimum and better clustering effect. PMID:25435862

  20. Optimal Spatial Resolution of Omnidirectional Imaging Systems for Pipe Inspection Applications

    NASA Astrophysics Data System (ADS)

    Dehghan Tezerjani, Abbasali; Mehrandezh, Mehran; Paranjape, Raman

    2015-10-01

    Achieving optimal spatial resolution in imaging systems plays a major role in the design of vision-based industrial inspection tools. Single-view omnidirectional imaging systems provide a cost-effective and computationally-traceable solution for real-time inspection of infrastructure with a favorable size factor. We formulate, for the first time, the spatial cylindrical resolution of omnidirectional Catadioptric and Dioptric imaging systems with the focus on pipe inspection applications. We also provide a design guideline to achieve the highest resolution in these systems. First, we deliver a comprehensive study on optimal resolution in Catadioptric imaging systems which consist of a perspective pinhole camera, a collimated laser as the light source, and a reflective surface (i.e., hyperbolic mirror). Variation of the spatial resolution in terms of the camera's focal length, the mirror curvature, and the relative position between the laser projector and the camera is fully investigated via simulation and experiments. Also, the optimal resolution in Dioptric systems, which consist of a camera with compound refractive lenses (i.e., fish-eye lens) is studied and compared with that in Catadioptric systems. Tests were conducted on a 40-cm-diameter PVC pipe in a controlled laboratory environment.

  1. Spatial and Temporal Simulation of Human Evolution. Methods, Frameworks and Applications

    PubMed Central

    Benguigui, Macarena; Arenas, Miguel

    2014-01-01

    Analyses of human evolution are fundamental to understand the current gradients of human diversity. In this concern, genetic samples collected from current populations together with archaeological data are the most important resources to study human evolution. However, they are often insufficient to properly evaluate a variety of evolutionary scenarios, leading to continuous debates and discussions. A commonly applied strategy consists of the use of computer simulations based on, as realistic as possible, evolutionary models, to evaluate alternative evolutionary scenarios through statistical correlations with the real data. Computer simulations can also be applied to estimate evolutionary parameters or to study the role of each parameter on the evolutionary process. Here we review the mainly used methods and evolutionary frameworks to perform realistic spatially explicit computer simulations of human evolution. Although we focus on human evolution, most of the methods and software we describe can also be used to study other species. We also describe the importance of considering spatially explicit models to better mimic human evolutionary scenarios based on a variety of phenomena such as range expansions, range shifts, range contractions, sex-biased dispersal, long-distance dispersal or admixtures of populations. We finally discuss future implementations to improve current spatially explicit simulations and their derived applications in human evolution. PMID:25132795

  2. A hierarchical spatial model of avian abundance with application to Cerulean Warblers

    USGS Publications Warehouse

    Thogmartin, W.E.; Sauer, J.R.; Knutson, M.G.

    2004-01-01

    is counts, such as animal counts, activity (e.g.,nest) counts, or species richness. The most noteworthy practical application of this spatial modeling approach is the ability to map relative species abundance. The functional relationships that we elucidated for the Cerulean Warbler provide a basis for the development of management programs and may serve to focus management and monitoring on areas and habitat variables important to Cerulean Warblers.

  3. Lack of spatial and behavioral responses to immunocontraception application in African elephants (Loxodonta africana).

    PubMed

    Delsink, Audrey K; Kirkpatrick, Jay; van Altena, J J; Bertschinger, Henk J; Ferreira, Sam M; Slotow, Robert

    2013-12-01

    Opinions are divided as to whether human intervention to control elephant (Loxodonta africana) population growth is desirable, partly because of elephant welfare concerns. Female contraception through immunization with porcine zona pellucida (PZP) proteins is viable. The effects of sustained use and application of the PZP vaccine on elephant behavioral and spatial responses were examined by evaluating herd ranging, fission-fusion dynamics, association patterns, and reproductive and sexual behaviors. Minimal change was anticipated as a result of long calf dependence on and association with cows, a reduced but not indefinite 0% growth rate and the known mechanism of action of PZP vaccines, and minimal expected change in resource requirements necessitating behavioral or spatial use adaptations. Although behavioral effects identified in previous hormonal contraceptive trials were evident, it was demonstrated that immunocontraception caused no prolonged behavioral, social, or spatial changes over the 11-yr study period. Individually identified elephants were monitored from 1999 to 2011. Minimal, short-term social disruption, with temporary changes to the herds' core ranges, was observed during the annual treatment events, particularly in the first three treatment years, when vaccinations were conducted exclusively from the ground. Thereafter, when vaccinations were conducted aerially, minor disruptions were confined to the morning of administration only. Despite sustained treatments resulting in demographic changes of fewer calves being born, treatments did not alter spatial range use, and no adverse interherd-intraherd relations were observed. Similarly, resource requirements did not change as calving still occurred, although in fewer numbers. It was concluded that PZP immunocontraception has no detectable behavioral or social consequences in elephants over the course of 11 yr, providing a convincing argument for the use of sustained immunocontraception in the medium

  4. Towards a typology of spatial relations and properties for urban applications

    NASA Astrophysics Data System (ADS)

    Bucher, B.; Falquet, G.; Clementini, E.; Sester, M.

    2012-10-01

    Relations that occur between features located in space-like the fact that a street is surrounded by very high buildings, that an airport is close to a city- as well as spatial properties of features-like the height and width of a door- play an important role for many urban applications. Digital models of cities can assist in the evaluation of these relations and properties either through visualisation or through computation, mainly based on geometrical information. Hence, considering the objective of explaining to potential users of these city models what useful information they can derive from these data and how, a possible way to address this objective lies in the usage of a pivot model composed of relevant spatial properties and relations, connected to information meaningful to the user and connected to the possible computation of them on available data. This paper firstly sets the ground for a typology of such relevant relations and properties that are shared by different applications and that can be derived/approximated from existing data. It then proposes a model to describe these properties and relations and connect them to their possible computation based on data (2D or 3D). An important aspect of this model is to distinguish between a conceptual layer where relations occur between "real world" features and an implementation layer where they are calculated based on database features and geometries.

  5. From high spatial resolution imagery to spatial indicators : Application for hydromorphy follow-up on Bourgneuf wetland

    NASA Astrophysics Data System (ADS)

    Bailly, J. S.; Puech, C.; Lukac, F.; Massé, J.

    2003-04-01

    On Atlantic coastal wetlands, the understanding of hydrological processes may refer to hydraulic surface structures characterization as small ditches or channels networks, permanent and temporary water bodies. Moreover to improve the understanding, this characerization should be realized regarding different seasons and different spatial scales: elementary parcel, managment unit and whole wetland scales. In complement to usual observations on a few local ground points, high spatial resolution remote sensing may be a good information support for extraction and characterization on elementary objects, especially water bodies, permanents or temporary ones and ditches. To carry out a floow-up on wetlands, a seasonal image acquisition rate, reachable from most of satelite systems, is in that case informative for hydrological needs. In this work, georeferencing methods on openfield wetlands have been handled with care in order to use diachronic images or combined geographical data; lack of relief, short vegetation and well structured landscape make this preprocess easier in comparison to other landscape situations. In this presentation we focus on spatial hydromorphy parameters constructed from images with specific processes. Especially, hydromorphy indicators for parcels or managment units have been developped using an IRC winter-spring-summer metric resolution set of images: these descriptors are based on water areas evolution or hydrophyl vegetations presence traducing hydrodynamic submersion behaviour in temporary water bodies. An other example presents a surface water network circulation indicator elaborated on IRC aerial photography combined with vectorized geographic database. This indicator is based on ditches width and vegetation presence : a specific process uses vectorized geo data set to define transects across ditches on which classified image analysis is carried out (supervised classification). These first results proposing hydromorphy descriptors from very

  6. Development of spatial density maps based on geoprocessing web services: application to tuberculosis incidence in Barcelona, Spain

    PubMed Central

    2011-01-01

    Background Health professionals and authorities strive to cope with heterogeneous data, services, and statistical models to support decision making on public health. Sophisticated analysis and distributed processing capabilities over geocoded epidemiological data are seen as driving factors to speed up control and decision making in these health risk situations. In this context, recent Web technologies and standards-based web services deployed on geospatial information infrastructures have rapidly become an efficient way to access, share, process, and visualize geocoded health-related information. Methods Data used on this study is based on Tuberculosis (TB) cases registered in Barcelona city during 2009. Residential addresses are geocoded and loaded into a spatial database that acts as a backend database. The web-based application architecture and geoprocessing web services are designed according to the Representational State Transfer (REST) principles. These web processing services produce spatial density maps against the backend database. Results The results are focused on the use of the proposed web-based application to the analysis of TB cases in Barcelona. The application produces spatial density maps to ease the monitoring and decision making process by health professionals. We also include a discussion of how spatial density maps may be useful for health practitioners in such contexts. Conclusions In this paper, we developed web-based client application and a set of geoprocessing web services to support specific health-spatial requirements. Spatial density maps of TB incidence were generated to help health professionals in analysis and decision-making tasks. The combined use of geographic information tools, map viewers, and geoprocessing services leads to interesting possibilities in handling health data in a spatial manner. In particular, the use of spatial density maps has been effective to identify the most affected areas and its spatial impact. This

  7. Active crop canopy sensor optimal spatial scale for in-season variable-rate nitrogen application in corn

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Active crop canopy reflectance sensors have shown to be an efficient method for assessing spatially-variable crop nitrogen (N) need and controlling remedial in-season N applications in wheat. Recently, these sensors have been studied for N application in corn. This study will be conducted during the...

  8. Using GIS to generate spatially balanced random survey designs for natural resource applications.

    PubMed

    Theobald, David M; Stevens, Don L; White, Denis; Urquhart, N Scott; Olsen, Anthony R; Norman, John B

    2007-07-01

    Sampling of a population is frequently required to understand trends and patterns in natural resource management because financial and time constraints preclude a complete census. A rigorous probability-based survey design specifies where to sample so that inferences from the sample apply to the entire population. Probability survey designs should be used in natural resource and environmental management situations because they provide the mathematical foundation for statistical inference. Development of long-term monitoring designs demand survey designs that achieve statistical rigor and are efficient but remain flexible to inevitable logistical or practical constraints during field data collection. Here we describe an approach to probability-based survey design, called the Reversed Randomized Quadrant-Recursive Raster, based on the concept of spatially balanced sampling and implemented in a geographic information system. This provides environmental managers a practical tool to generate flexible and efficient survey designs for natural resource applications. Factors commonly used to modify sampling intensity, such as categories, gradients, or accessibility, can be readily incorporated into the spatially balanced sample design. PMID:17546523

  9. Early non-destructive biofouling detection and spatial distribution: Application of oxygen sensing optodes.

    PubMed

    Farhat, N M; Staal, M; Siddiqui, A; Borisov, S M; Bucs, Sz S; Vrouwenvelder, J S

    2015-10-15

    Biofouling is a serious problem in reverse osmosis/nanofiltration (RO/NF) applications, reducing membrane performance. Early detection of biofouling plays an essential role in an adequate anti-biofouling strategy. Presently, fouling of membrane filtration systems is mainly determined by measuring changes in pressure drop, which is not exclusively linked to biofouling. Non-destructive imaging of oxygen concentrations (i) is specific for biological activity of biofilms and (ii) may enable earlier detection of biofilm accumulation than pressure drop. The objective of this study was to test whether transparent luminescent planar O2 optodes, in combination with a simple imaging system, can be used for early non-destructive biofouling detection. This biofouling detection is done by mapping the two-dimensional distribution of O2 concentrations and O2 decrease rates inside a membrane fouling simulator (MFS). Results show that at an early stage, biofouling development was detected by the oxygen sensing optodes while no significant increase in pressure drop was yet observed. Additionally, optodes could detect spatial heterogeneities in biofouling distribution at a micro scale. Biofilm development started mainly at the feed spacer crossings. The spatial and quantitative information on biological activity will lead to better understanding of the biofouling processes, contributing to the development of more effective biofouling control strategies. PMID:26117369

  10. Fiber-Based, Spatially and Temporally Shaped Picosecond UV Laser for Advanced RF Gun Applications

    SciTech Connect

    Shverdin, M Y; Anderson, S G; Betts, S M; Gibson, D J; Hartemann, F V; Hernandez, J E; Johnson, M; Jovanovic, I; Messerly, M; Pruet, J; Tremaine, A M; McNabb, D P; Siders, C W; Barty, C J

    2007-06-08

    The fiber-based, spatially and temporally shaped, picosecond UV laser system described here has been specifically designed for advanced rf gun applications, with a special emphasis on the production of high-brightness electron beams for free-electron lasers and Compton scattering light sources. The laser pulse can be shaped to a flat-top in both space and time with a duration of 10 ps at full width of half-maximum (FWHM) and rise and fall times under 1 ps. The expected pulse energy is 50 {micro}J at 261.75 nm and the spot size diameter of the beam at the photocathode is 2 mm. A fiber oscillator and amplifier system generates a chirped pump pulse at 1047 nm; stretching is achieved in a chirped fiber Bragg grating. A single multi-layer dielectric grating based compressor recompresses the input pulse to 250 fs FWHM and a two stage harmonic converter frequency quadruples the beam. Temporal shaping is achieved with a Michelson-based ultrafast pulse stacking device with nearly 100% throughput. Spatial shaping is achieved by truncating the beam at the 20% energy level with an iris and relay-imaging the resulting beam profile onto the photocathode. The integration of the system, as well as preliminary laser measurements will be presented.

  11. [Applicability analysis of spatially explicit model of leaf litter in evergreen broad-leaved forests].

    PubMed

    Zhao, Qing-Qing; Liu, He-Ming; Jonard, Mathieu; Wang, Zhang-Hua; Wang, Xi-Hua

    2014-11-01

    The spatially explicit model of leaf litter can help to understand its dispersal process, which is very important to predict the distribution pattern of leaves on the surface of the earth. In this paper, the spatially explicit model of leaf litter was developed for 20 tree species using litter trap data from the mapped forest plot in an evergreen broad-leaved forest in Tiantong, Zhejiang Pro- vince, eastern China. Applicability of the model was analyzed. The model assumed an allometric equation between diameter at breast height (DBH) and leaf litter amount, and the leaf litter declined exponentially with the distance. Model parameters were estimated by the maximum likelihood method. Results showed that the predicted and measured leaf litter amounts were significantly correlated, but the prediction accuracies varied widely for the different tree species, averaging at 49.3% and ranging from 16.0% and 74.0%. Model qualities of tree species significantly correlated with the standard deviations of the leaf litter amount per trap, DBH of the tree species and the average leaf dry mass of tree species. There were several ways to improve the forecast precision of the model, such as installing the litterfall traps according to the distribution of the tree to cover the different classes of the DBH and distance apart from the parent trees, determining the optimal dispersal function of each tree species, and optimizing the existing dispersal function. PMID:25898606

  12. Detection of spatially extended sources in high energy astrophysics with special application to lunar occultation

    NASA Astrophysics Data System (ADS)

    Jenke, Peter Alexander

    2009-01-01

    Occultation is a technique that enables image reconstruction and source identification with a non-imaging detector. Such an approach is well suited for a future survey mission in nuclear astrophysics. In particular, the Lunar Occultation Technique (LOT) utilizes the Moon as an occulting object and is the basis of a new gamma-ray survey mission concept, the Lunar OCcultation Observer (LOCO). Techniques utilizing the LOT to detect spatially extended emission, from the Galactic plane or Galactic Center region, have been developed. Given knowledge of detector position in lunar orbit, combined with lunar ephemeris and relevant coordinate transformations, occultation time series can be used to reconstruct skymaps of these extended Galactic emitters. Monte-Carlo Markov Chains (MCMC), incorporating the Metropolis-Hastings algorithm for parametric model testing, form the basis of the technique. Performance of the imaging methodology, and its application to nuclear astrophysics will be presented.

  13. Ultra-spatial synchrotron radiation for imaging molecular chemical structure: Applications in plant and animal studies

    DOE PAGESBeta

    Yu, Peiqiang

    2007-01-01

    Synchrotron-based Fourier transform infrared microspectroscopy (S-FTIR) has been developed as a rapid, direct, non-destructive, bioanalytical technique. This technique takes advantage of synchrotron light brightness and small effective source size and is capable of exploring the molecular chemical features and make-up within microstructures of a biological tissue without destruction of inherent structures at ultra-spatial resolutions within cellular dimension. To date there has been very little application of this advanced synchrotron technique to the study of plant and animal tissues' inherent structure at a cellular or subcellular level. In this article, a novel approach was introduced to show the potential of themore » newly developed, advanced synchrotron-based analytical technology, which can be used to reveal molecular structural-chemical features of various plant and animal tissues.« less

  14. A GIS-based approach for spatial analysis of agricultural nitrogen pollution and its application

    NASA Astrophysics Data System (ADS)

    Lu, Liping; Liu, Weidong; Sun, Lin; Qin, Zhihao

    2009-10-01

    Agricultural pollution, which has a direct impact on the water, soil and air quality, is a common but increasingly serious environmental problem nowadays. The misusage of fertilizer, high application fertilizer and low utilization rate, are the major factors of the pollution. Therefore, the pollution caused by nitrate nitrogen has posed a very serious problem to the ecological environment. Combined with the GIS technology, this paper takes Majiang County in Guizhou province that is at southwest of China as a case, to carry out the research on the calculation of the nitrogen surplus in paddy field and the dry land based on the farmland nutrient balance model using the fertilizer amount. This paper reveals the spatial distribution characteristic of the nitrogen pollution, which can help to find a reasonable crop cultivation and fertilization methods to increase the effective utilization fertilization and therefore reduce the pollution.

  15. Advanced Spatial-Division Multiplexed Measurement Systems Propositions-From Telecommunication to Sensing Applications: A Review.

    PubMed

    Weng, Yi; Ip, Ezra; Pan, Zhongqi; Wang, Ting

    2016-01-01

    The concepts of spatial-division multiplexing (SDM) technology were first proposed in the telecommunications industry as an indispensable solution to reduce the cost-per-bit of optical fiber transmission. Recently, such spatial channels and modes have been applied in optical sensing applications where the returned echo is analyzed for the collection of essential environmental information. The key advantages of implementing SDM techniques in optical measurement systems include the multi-parameter discriminative capability and accuracy improvement. In this paper, to help readers without a telecommunication background better understand how the SDM-based sensing systems can be incorporated, the crucial components of SDM techniques, such as laser beam shaping, mode generation and conversion, multimode or multicore elements using special fibers and multiplexers are introduced, along with the recent developments in SDM amplifiers, opto-electronic sources and detection units of sensing systems. The examples of SDM-based sensing systems not only include Brillouin optical time-domain reflectometry or Brillouin optical time-domain analysis (BOTDR/BOTDA) using few-mode fibers (FMF) and the multicore fiber (MCF) based integrated fiber Bragg grating (FBG) sensors, but also involve the widely used components with their whole information used in the full multimode constructions, such as the whispering gallery modes for fiber profiling and chemical species measurements, the screw/twisted modes for examining water quality, as well as the optical beam shaping to improve cantilever deflection measurements. Besides, the various applications of SDM sensors, the cost efficiency issue, as well as how these complex mode multiplexing techniques might improve the standard fiber-optic sensor approaches using single-mode fibers (SMF) and photonic crystal fibers (PCF) have also been summarized. Finally, we conclude with a prospective outlook for the opportunities and challenges of SDM

  16. Modeling diffusion-weighted MRI as a spatially variant Gaussian mixture: Application to image denoising

    PubMed Central

    Gonzalez, Juan Eugenio Iglesias; Thompson, Paul M.; Zhao, Aishan; Tu, Zhuowen

    2011-01-01

    Purpose: This work describes a spatially variant mixture model constrained by a Markov random field to model high angular resolution diffusion imaging (HARDI) data. Mixture models suit HARDI well because the attenuation by diffusion is inherently a mixture. The goal is to create a general model that can be used in different applications. This study focuses on image denoising and segmentation (primarily the former). Methods: HARDI signal attenuation data are used to train a Gaussian mixture model in which the mean vectors and covariance matrices are assumed to be independent of spatial locations, whereas the mixture weights are allowed to vary at different lattice positions. Spatial smoothness of the data is ensured by imposing a Markov random field prior on the mixture weights. The model is trained in an unsupervised fashion using the expectation maximization algorithm. The number of mixture components is determined using the minimum message length criterion from information theory. Once the model has been trained, it can be fitted to a noisy diffusion MRI volume by maximizing the posterior probability of the underlying noiseless data in a Bayesian framework, recovering a denoised version of the image. Moreover, the fitted probability maps of the mixture components can be used as features for posterior image segmentation. Results: The model-based denoising algorithm proposed here was compared on real data with three other approaches that are commonly used in the literature: Gaussian filtering, anisotropic diffusion, and Rician-adapted nonlocal means. The comparison shows that, at low signal-to-noise ratio, when these methods falter, our algorithm considerably outperforms them. When tractography is performed on the model-fitted data rather than on the noisy measurements, the quality of the output improves substantially. Finally, ventricle and caudate nucleus segmentation experiments also show the potential usefulness of the mixture probability maps for

  17. Making digital phantoms with spectral and spatial light modulators for quantitative applications of hyperspectral optical medical imaging devices

    NASA Astrophysics Data System (ADS)

    Chon, Bonghwan; Tokumasu, Fuyuki; Lee, Ji Youn; Allen, David W.; Rice, Joseph P.; Hwang, Jeeseong

    2015-03-01

    We present a procedure to generate digital phantoms with a hyperspectral image projector (HIP) consisting of two liquid crystal on silicon (LCoS) spatial light modulators (SLMs). The digital phantoms are 3D image data cubes of the spatial distribution of spectrally resolved abundances of intracellular light-absorbing oxy-hemoglobin molecules in single erythrocytes. Spectrally and spatially resolved image data indistinguishable from the real scene may be used as standards to calibrate image sensors and validate image analysis algorithms for their measurement quality, performance consistency, and inter-laboratory comparisons for quantitative biomedical imaging applications.

  18. Geodesic Information Flows: Spatially-Variant Graphs and Their Application to Segmentation and Fusion.

    PubMed

    Cardoso, M Jorge; Modat, Marc; Wolz, Robin; Melbourne, Andrew; Cash, David; Rueckert, Daniel; Ourselin, Sebastien

    2015-09-01

    Clinical annotations, such as voxel-wise binary or probabilistic tissue segmentations, structural parcellations, pathological regions-of-interest and anatomical landmarks are key to many clinical studies. However, due to the time consuming nature of manually generating these annotations, they tend to be scarce and limited to small subsets of data. This work explores a novel framework to propagate voxel-wise annotations between morphologically dissimilar images by diffusing and mapping the available examples through intermediate steps. A spatially-variant graph structure connecting morphologically similar subjects is introduced over a database of images, enabling the gradual diffusion of information to all the subjects, even in the presence of large-scale morphological variability. We illustrate the utility of the proposed framework on two example applications: brain parcellation using categorical labels and tissue segmentation using probabilistic features. The application of the proposed method to categorical label fusion showed highly statistically significant improvements when compared to state-of-the-art methodologies. Significant improvements were also observed when applying the proposed framework to probabilistic tissue segmentation of both synthetic and real data, mainly in the presence of large morphological variability. PMID:25879909

  19. A spatial application of a vegetation productivity equation for neo-soil reconstruction

    SciTech Connect

    Burley, J.B.

    1999-07-01

    Reclamation specialists are interested in the application of recently developed soil productivity equations for post-mining reclamation planning and design. This paper presents the application of one recently developed soil productivity equation to a surface coal mine site in Mercer County, North Dakota. Geographic information systems (GIS) technology (Map*Factory 1.1) was combined with a soil productivity equation developed by the author to generate a GIS script to calculate a site's pre-mining productivity per 10 meter grid cell and then summed to calculate the grand and the expected average soil productivity for the site, resulting in a pre-mining baseline numerical spatial scores. Several post-mining alternatives were evaluated to study various soil management strategies to restore post-mining soil productivity, including: an abandoned mine landscape treatment, a reconstructed topsoil treatment with graded gentile slopes, and a reconstructed topsoil treatment with soil improvements. The results indicated that the abandoned mine scenario was significantly different than the other three treatments (p{le}0.05), with the reconstructed topsoil treatment with soil amendments generating the greatest estimated productivity.

  20. Using Geo-Spatial Technologies for Field Applications in Higher Geography Education

    ERIC Educational Resources Information Center

    Karatepe, Akif

    2012-01-01

    Today's important geo-spatial technologies, GIS (Geographic Information Systems), GPS (Global Positioning Systems) and Google Earth have been widely used in geography education. Transferring spatially oriented data taken by GPS to the GIS and Google Earth has provided great benefits in terms of showing the usage of spatial technologies for field…

  1. EMCCD based luminescence imaging system for spatially resolved geo-chronometric and radiation dosimetric applications

    NASA Astrophysics Data System (ADS)

    Chauhan, N.; Adhyaru, P.; Vaghela, H.; Singhvi, A. K.

    2014-11-01

    We report the development of an Electron Multiplier Charge Coupled Device (EMCCD) based luminescence dating system. The system enables position sensitive measurements of luminescence for the estimation of spatially resolved distribution of equivalent dose for complex geological samples. The system includes: 1) a sample stimulation unit (with both thermal and optical stimulations), 2) an optics unit that comprises imaging optics and, 3) a data acquisition and processing unit. The system works in a LabVIEW environment with a graphical user interface (GUI). User specified stimulation protocols enable thermal and optical stimulation in any desired combination. The optics unit images the luminescence on to a EMCCD (512 × 512 pixels, each of 16μm × 16μm size) and maintains a unit magnification. This unit has flexible focusing and a filter housing that enables change of filters combinations without disturbing the setup. Time integrated EMCCD images of luminescence from the sample are acquired as a function of programmable dwell time and these images are processed using indigenously developed MATLAB based programs. Additionally, the programs align the acquired images using a set of control points (identifier features on the images) to a single pixel accuracy. The dose evaluation is based on integrated intensity from selected pixels followed by generation of a growth curve giving luminescence as a function of applied beta doses. Development of this EMCCD camera based luminescence system will enable in-situ luminescence measurements of the samples, without the requirement of separating mineral grains from their matrix. It will also allow age estimation of samples such as lithic artifacts/structures via dating of their surfaces, fusion crust of meteorites, pedogenic carbonates, etc and will additionally open up possibilities of application like testing spatial uniformity of doping in artificial luminescence phosphors, dating/dosimetry of inclusions etc.

  2. Spatial light modulators and applications III; Proceedings of the Meeting, San Diego, CA, Aug. 7, 8, 1989

    NASA Technical Reports Server (NTRS)

    Efron, Uzi (Editor)

    1990-01-01

    Recent advances in the technology and applications of spatial light modulators (SLMs) are discussed in review essays by leading experts. Topics addressed include materials for SLMs, SLM devices and device technology, applications to optical data processing, and applications to artificial neural networks. Particular attention is given to nonlinear optical polymers, liquid crystals, magnetooptic SLMs, multiple-quantum-well SLMs, deformable-mirror SLMs, three-dimensional optical memories, applications of photorefractive devices to optical computing, photonic neurocomputers and learning machines, holographic associative memories, SLMs as parallel memories for optoelectronic neural networks, and coherent-optics implementations of neural-network models.

  3. A spatially distributed energy balance snowmelt model for application in mountain basins

    USGS Publications Warehouse

    Marks, D.; Domingo, J.; Susong, D.; Link, T.; Garen, D.

    1999-01-01

    Snowmelt is the principal source for soil moisture, ground-water re-charge, and stream-flow in mountainous regions of the western US, Canada, and other similar regions of the world. Information on the timing, magnitude, and contributing area of melt under variable or changing climate conditions is required for successful water and resource management. A coupled energy and mass-balance model ISNOBAL is used to simulate the development and melting of the seasonal snowcover in several mountain basins in California, Idaho, and Utah. Simulations are done over basins varying from 1 to 2500 km2, with simulation periods varying from a few days for the smallest basin, Emerald Lake watershed in California, to multiple snow seasons for the Park City area in Utah. The model is driven by topographically corrected estimates of radiation, temperature, humidity, wind, and precipitation. Simulation results in all basins closely match independently measured snow water equivalent, snow depth, or runoff during both the development and depletion of the snowcover. Spatially distributed estimates of snow deposition and melt allow us to better understand the interaction between topographic structure, climate, and moisture availability in mountain basins of the western US. Application of topographically distributed models such as this will lead to improved water resource and watershed management.Snowmelt is the principal source for soil moisture, ground-water re-charge, and stream-flow in mountainous regions of the western US, Canada, and other similar regions of the world. Information on the timing, magnitude, and contributing area of melt under variable or changing climate conditions is required for successful water and resource management. A coupled energy and mass-balance model ISNOBAL is used to simulate the development and melting of the seasonal snowcover in several mountain basins in California, Idaho, and Utah. Simulations are done over basins varying from 1 to 2500 km2, with

  4. Application of Spatial Continuous Wavelet Transforms to Identify Noise in Regional Airborne Electromagnetic Data

    NASA Astrophysics Data System (ADS)

    Nenna, V.; Pidlisecky, A.

    2012-12-01

    As mapping of groundwater resources with airborne electromagnetics expands into more urban areas, it is increasingly important to identify sources of cultural noise in acquired data sets. A number of methods have been proposed to reduce the impact of cultural coupling on acquired data. While intense local calibration to increase the signal to noise ratio has been used, most often in practice, the transients associated with these noise sources are manually identified and filtered out during data processing. This can be a challenging task, particularly as datasets grow large (e.g. up to terabytes of data). In response to this, we propose a method for identifying noise in airborne electromagnetic data based on a spatial application of the continuous wavelet transform (CWT). We apply a continuous wavelet transform to three airborne electromagnetic surveys collected in the Edmonton-Calgary Corridor as part of a groundwater inventory sponsored by the Alberta Geological Survey and Environment Alberta. The three surveys consist of 210 flightlines covering approximately 18 000 linear kilometers with roughly 13 m sounding spacing. B-field and dB/dt data from a three-component 20-channel GeoTEM multicoil system, were recorded at 5 on-time and 15 off-time channels with a total measurement time of 16.664 ms per sounding. The nominal height of vertical axis transmitter was 120 m; the current pulse was 670 A, and the pulse-width was 4.045 ms. Wavelet transforms are localized in time and frequency, similar to a windowed Fourier transform, and are used to identify dominant frequencies within a signal as a function of time or space. While there are a number of options for wavelet functions, we convolve a Morlet wavelet with the data signal at 120 distance scales on a logarithmic scale from 0.1 to 30 km. We calculate the CWT along each flightline for all off-time channels. We then calculate the wavelet power normalized by the data variance, and bin results into 4 bins of spatial

  5. DOTAGWA: A CASE STUDY IN WEB-BASED ARCHITECTURES FOR CONNECTING SURFACE WATER MODELS TO SPATIALLY ENABLED WEB APPLICATIONS

    EPA Science Inventory

    The Automated Geospatial Watershed Assessment (AGWA) tool is a desktop application that uses widely available standardized spatial datasets to derive inputs for multi-scale hydrologic models (Miller et al., 2007). The required data sets include topography (DEM data), soils, clima...

  6. A spatially distributed energy balance snowmelt model for application in mountain basins

    NASA Astrophysics Data System (ADS)

    Marks, Danny; Domingo, James; Susong, Dave; Link, Tim; Garen, David

    1999-09-01

    Snowmelt is the principal source for soil moisture, ground-water re-charge, and stream-flow in mountainous regions of the western US, Canada, and other similar regions of the world. Information on the timing, magnitude, and contributing area of melt under variable or changing climate conditions is required for successful water and resource management. A coupled energy and mass-balance model ISNOBAL is used to simulate the development and melting of the seasonal snowcover in several mountain basins in California, Idaho, and Utah. Simulations are done over basins varying from 1 to 2500 km2, with simulation periods varying from a few days for the smallest basin, Emerald Lake watershed in California, to multiple snow seasons for the Park City area in Utah. The model is driven by topographically corrected estimates of radiation, temperature, humidity, wind, and precipitation. Simulation results in all basins closely match independently measured snow water equivalent, snow depth, or runoff during both the development and depletion of the snowcover. Spatially distributed estimates of snow deposition and melt allow us to better understand the interaction between topographic structure, climate, and moisture availability in mountain basins of the western US. Application of topographically distributed models such as this will lead to improved water resource and watershed management.

  7. Lighting up the World The first global application of the open source, spatial electrification toolkit (ONSSET)

    NASA Astrophysics Data System (ADS)

    Mentis, Dimitrios; Howells, Mark; Rogner, Holger; Korkovelos, Alexandros; Siyal, Shahid; Broad, Oliver; Zepeda, Eduardo; Bazilian, Morgan

    2016-04-01

    In September 2015, the international community has adopted a new set of targets, following and expanding on the millennium development goals (MDGs), the Sustainable Development Goals (SDGs). Ensuring access to affordable, reliable, sustainable and modern energy for all is one of the 17 set goals that each country should work towards realizing. According to the latest Global Tracking Framework, 15% of the global population live without access to electricity. The majority of those (87%) reside in rural areas. Countries can reach universal access through various electrification options, depending on different levels of energy intensity and local characteristics of the studied areas, such as renewable resources availability, spatially differentiated costs of diesel-fuelled electricity generation, distance from power network and major cities, population density and others, data which are usually inadequate in national databases. This general paucity of reliable energy-related information in developing countries calls for the utilization of geospatial data. This paper presents a Geographic Information Systems (GIS) based electrification analysis for all countries that have not yet reached full access to electricity (Sub-Saharan Africa, Developing Asia, Latin America and Middle East). The cost optimal mix of electrification options ranges from grid extensions to mini-grid and stand-alone applications and is identified for all relevant countries. It is illustrated how this mix is influenced by scrolling through various electrification levels and different oil prices. Such an analysis helps direct donors and investors and inform multinational actions with regards to investments related to energy access.

  8. An electrostatic spatial resonance model for coaxial helical structures with applications to the filamentous bacteriophages.

    PubMed Central

    Marzec, C J; Day, L A

    1994-01-01

    A model is presented that treats the symmetry matching problem in structures made of two interacting coaxial helices of point charges. The charges are sources of a potential field that mediates a non-specific attractive interaction between the helices. The problem is represented in Fourier space, which affords the most generality. It is found that coaxial helices with optimally mated symmetries can lock into spatial resonance configurations that maximize their interaction. The resonances are represented as vectors in a discrete three-dimensional space. Two algebraic relations are given for the four symmetry parameters of two helices in resonance. One-start inner helices interacting with coaxial one-start or NR-start outer helices are considered. Applications are made to the filamentous bacteriophages Ff, Pf1, Xf, and Pf3. The interaction given by the linearized Poisson-Boltzmann equation is calculated in this formalism to allow comparison of the electrostatic free energy of interaction of different resonance structures. Experimental nucleotide/subunit ratios are accounted for, and models for the DNA-protein interfaces are presented, with particular emphasis on Pf1. PMID:7696463

  9. Invariant Feature Matching for Image Registration Application Based on New Dissimilarity of Spatial Features

    PubMed Central

    Mousavi Kahaki, Seyed Mostafa; Nordin, Md Jan; Ashtari, Amir H.; J. Zahra, Sophia

    2016-01-01

    An invariant feature matching method is proposed as a spatially invariant feature matching approach. Deformation effects, such as affine and homography, change the local information within the image and can result in ambiguous local information pertaining to image points. New method based on dissimilarity values, which measures the dissimilarity of the features through the path based on Eigenvector properties, is proposed. Evidence shows that existing matching techniques using similarity metrics—such as normalized cross-correlation, squared sum of intensity differences and correlation coefficient—are insufficient for achieving adequate results under different image deformations. Thus, new descriptor’s similarity metrics based on normalized Eigenvector correlation and signal directional differences, which are robust under local variation of the image information, are proposed to establish an efficient feature matching technique. The method proposed in this study measures the dissimilarity in the signal frequency along the path between two features. Moreover, these dissimilarity values are accumulated in a 2D dissimilarity space, allowing accurate corresponding features to be extracted based on the cumulative space using a voting strategy. This method can be used in image registration applications, as it overcomes the limitations of the existing approaches. The output results demonstrate that the proposed technique outperforms the other methods when evaluated using a standard dataset, in terms of precision-recall and corner correspondence. PMID:26985996

  10. Design and Development of an Open Source Software Application for the Characterization of Spatially Variable Fields

    NASA Astrophysics Data System (ADS)

    Gunnell, D. K.; Osorio-Murillo, C. A.; Over, M. W.; Frystacky, H.; Ames, D. P.; Rubin, Y.

    2013-12-01

    The characterization of the structural parameters of spatially variable fields (SVFs) is essential to understanding the variability of hydrological processes such as infiltration, evapotranspiration, groundwater contaminant transport, etc. SVFs can be characterized using a Bayesian inverse method called Method of Anchored Distributions (MAD). This method characterizes the structural parameters of SVFs using prior information of structural parameter fields, indirect measurements, and simulation models allowing the transfer of valuable information to a target variable field. An example SVF in hydrology is hydraulic conductivity, which may be characterized by head pressure measurements through a simulation model such as MODFLOW. This poster will present the design and development of a free and open source inverse modeling desktop software application and extension framework called MAD# for the characterization of the structural parameters of SVFs using MAD. The developed software is designed with a flexible architecture to support different simulation models and random field generators and includes geographic information system (GIS) interfaces for representing, analyzing, and understanding SVFs. This framework has also been made compatible with Mono, a cross-platform implementation of C#, for a wider usability.

  11. On the spatial coherence in mixed sound fields and its application to signal-to-diffuse ratio estimation.

    PubMed

    Thiergart, Oliver; Del Galdo, Giovanni; Habets, Emanuël A P

    2012-10-01

    Many applications in spatial sound recording and processing model the sound scene as a sum of directional and diffuse sound components. The power ratio between both components, i.e., the signal-to-diffuse ratio (SDR), represents an important measure for algorithms which aim at performing robustly in reverberant environments. This contribution discusses the SDR estimation from the spatial coherence between two arbitrary first-order directional microphones. First, the spatial coherence is expressed as function of the SDR. For most microphone setups, the spatial coherence is a complex function where both the absolute value and phase contain relevant information on the SDR. Secondly, the SDR estimator is derived from the spatial coherence function. The estimator is discussed for different practical microphone setups including coincident setups of arbitrary first-order directional microphones and spaced setups of identical first-order directional microphones. An unbiased SDR estimation requires noiseless coherence estimates as well as information on the direction-of-arrival of the directional sound, which usually has to be estimated. Nevertheless, measurement results verify that the proposed estimator is applicable in practice and provides accurate results. PMID:23039430

  12. Spatial Double Generalized Beta Regression Models: Extensions and Application to Study Quality of Education in Colombia

    ERIC Educational Resources Information Center

    Cepeda-Cuervo, Edilberto; Núñez-Antón, Vicente

    2013-01-01

    In this article, a proposed Bayesian extension of the generalized beta spatial regression models is applied to the analysis of the quality of education in Colombia. We briefly revise the beta distribution and describe the joint modeling approach for the mean and dispersion parameters in the spatial regression models' setting. Finally, we…

  13. A spatial bivariate probit model for correlated binary data with application to adverse birth outcomes.

    PubMed

    Neelon, Brian; Anthopolos, Rebecca; Miranda, Marie Lynn

    2014-04-01

    Motivated by a study examining geographic variation in birth outcomes, we develop a spatial bivariate probit model for the joint analysis of preterm birth and low birth weight. The model uses a hierarchical structure to incorporate individual and areal-level information, as well as spatially dependent random effects for each spatial unit. Because rates of preterm birth and low birth weight are likely to be correlated within geographic regions, we model the spatial random effects via a bivariate conditionally autoregressive prior, which induces regional dependence between the outcomes and provides spatial smoothing and sharing of information across neighboring areas. Under this general framework, one can obtain region-specific joint, conditional, and marginal inferences of interest. We adopt a Bayesian modeling approach and develop a practical Markov chain Monte Carlo computational algorithm that relies primarily on easily sampled Gibbs steps. We illustrate the model using data from the 2007-2008 North Carolina Detailed Birth Record. PMID:22599322

  14. Measuring the value of air quality: application of the spatial hedonic model.

    PubMed

    Kim, Seung Gyu; Cho, Seong-Hoon; Lambert, Dayton M; Roberts, Roland K

    2010-03-01

    This study applies a hedonic model to assess the economic benefits of air quality improvement following the 1990 Clean Air Act Amendment at the county level in the lower 48 United States. An instrumental variable approach that combines geographically weighted regression and spatial autoregression methods (GWR-SEM) is adopted to simultaneously account for spatial heterogeneity and spatial autocorrelation. SEM mitigates spatial dependency while GWR addresses spatial heterogeneity by allowing response coefficients to vary across observations. Positive amenity values of improved air quality are found in four major clusters: (1) in East Kentucky and most of Georgia around the Southern Appalachian area; (2) in a few counties in Illinois; (3) on the border of Oklahoma and Kansas, on the border of Kansas and Nebraska, and in east Texas; and (4) in a few counties in Montana. Clusters of significant positive amenity values may exist because of a combination of intense air pollution and consumer awareness of diminishing air quality. PMID:20376167

  15. Expanding Scales and Applications for 2D Spatial Mapping of CO2 using GreenLITE

    NASA Astrophysics Data System (ADS)

    Erxleben, W. H.; Dobler, J. T.; Zaccheo, T. S.; Blume, N.; Braun, M.

    2015-12-01

    The Greenhouse gas Laser Imaging Tomography Experiment (GreenLITE) system is a new measurement approach originally developed under a cooperative agreement with the Department of Energy (DOE) National Energy Technology Laboratory (NETL), Atmospheric Environmental Sciences (AER) and Exelis Inc. (now part of Harris Corp.). The original system design provides 24/7 monitoring of Ground Carbon Storage (GCS) sites, in order to help ensure worker safety and verify 99% containment. The first generation was designed to cover up to 1km2 area, and employs the Exelis Continuous Wave (CW) Intensity Modulated (IM) approach to measure differential transmission. A pair of scanning transceivers was built and combined with a series of retro reflectors, and a local weather station to provide the information required for producing estimates of the atmospheric CO2 concentration over a number of overlapping lines-of-site. The information from the transceivers, and weather station, are sent remotely to a web-based processing and storage tool, which in-turn uses the data to generate estimates of the 2D spatial distribution over the area of coverage and disseminate that information near real-time via a secure web interface. Recently, in 2015, Exelis and AER have invested in the expansion of the GreenLITE transceiver system to 5 km range, enabling areas up to 25 km2 to be evaluated with this technology, and opening new possibilities for applications such as urban scale monitoring. The 5 km system is being tested in conjunction with the National Institute of Standards and Technology at the Boulder Atmospheric Observatory in August of this year. This talk will review the initial GreenLITE system, testing and deployment of that system, and the more recent development, expansion and testing of the 5 km system.

  16. Application of spatial features to satellite land-use analysis. [spectral signature variations

    NASA Technical Reports Server (NTRS)

    Smith, J.; Hornung, R.; Berry, J.

    1975-01-01

    A Level I land-use analysis of selected training areas of the Colorado Front Range was carried out using digital ERTS-A satellite imagery. Level I land-use categories included urban, agriculture (irrigated and dryland farming), rangeland, and forests. The spatial variations in spectral response for these land-use classes were analyzed using discrete two-dimensional Fourier transforms to isolate and extract spatial features. Analysis was performed on ERTS frame 1352-17134 (July 10, 1973) and frame number 1388-17131 (August 15, 1973). On training sets, spatial features yielded 80 to 100 percent classification accuracies with commission errors ranging from 0 to 20 percent.

  17. Application of spatial Poisson process models to air mass thunderstorm rainfall

    NASA Technical Reports Server (NTRS)

    Eagleson, P. S.; Fennessy, N. M.; Wang, Qinliang; Rodriguez-Iturbe, I.

    1987-01-01

    Eight years of summer storm rainfall observations from 93 stations in and around the 154 sq km Walnut Gulch catchment of the Agricultural Research Service, U.S. Department of Agriculture, in Arizona are processed to yield the total station depths of 428 storms. Statistical analysis of these random fields yields the first two moments, the spatial correlation and variance functions, and the spatial distribution of total rainfall for each storm. The absolute and relative worth of three Poisson models are evaluated by comparing their prediction of the spatial distribution of storm rainfall with observations from the second half of the sample. The effect of interstorm parameter variation is examined.

  18. A SPATIALLY EXPLICIT HIERARCHICAL APPROACH TO MODELING COMPLEX ECOLOGICAL SYSTEMS: THEORY AND APPLICATIONS. (R827676)

    EPA Science Inventory

    Ecological systems are generally considered among the most complex because they are characterized by a large number of diverse components, nonlinear interactions, scale multiplicity, and spatial heterogeneity. Hierarchy theory, as well as empirical evidence, suggests that comp...

  19. Application of spatially weighted Technology for mapping intermediate and felsic igneous rocks in Fujian Province, China

    NASA Astrophysics Data System (ADS)

    Zhang, Daojun

    2016-04-01

    Magmatic activity is of great significance to mineralization not only for heat and fluid it provides, but also for parts of material source it brings. Due to the cover of soil and vegetation and its spatial nonuniformity detected singals from the ground's surface may be weak and of spatial variability, and this brings serious challenges to mineral exploration in these areas. Two models based on spatially weighted technology, i.e., local singularity analysis (LSA) and spatially weighted logistic regression (SWLR) are applied in this study to deal with this challenge. Coverage cannot block the migration of geochemical elements, it is possible that the geochemical features of soil above concealed rocks can be different from surrounding environment, although this kind of differences are weak; coverage may also weaken the surface expression of geophysical fields. LSA is sensitive to weak changes in density or energy, which makes it effective to map the distribution of concealed igneous rock based on geochemical and geophysical properties. Data integration can produce better classification results than any single data analysis, but spatial variability of spatial variables caused by non-stationary coverage can greatly affect the results since sometimes it is hard to establish a global model. In this paper, SWLR is used to integrate all spatial layers extracted from both geochemical and geophysical data, and the iron polymetallic metallogenic belt in sours-west of Fujian Province is used as s study case. It is found that LSA technique effectively extracts different sources of geologic anomalies; and the spatial distribution of intermediate and felsic igneous rocks delineated by SWLR shows higher accuracy compared with the result obtained via global model.

  20. Spatial pattern of 2009 dengue distribution in Kuala Lumpur using GIS application.

    PubMed

    Aziz, S; Ngui, R; Lim, Y A L; Sholehah, I; Nur Farhana, J; Azizan, A S; Wan Yusoff, W S

    2012-03-01

    In the last few years in Malaysia, dengue fever has increased dramatically and has caused huge public health concerns. The present study aimed to establish a spatial distribution of dengue cases in the city of Kuala Lumpur using a combination of Geographic Information System (GIS) and spatial statistical tools. Collation of data from 1,618 dengue cases in 2009 was obtained from Kuala Lumpur City Hall (DBKL). These data were processed and then converted into GIS format. Information on the average monthly rainfall was also used to correlate with the distribution pattern of dengue cases. To asses the spatial distribution of dengue cases, Average Nearest Neighbor (ANN) Analysis was applied together with spatial analysis with the ESRI ArcGIS V9.3 programme. Results indicated that the distribution of dengue cases in Kuala Lumpur for the year 2009 was spatially clustered with R value less than 1 (R = 0.42; z-scores = - 4.47; p < 0.001). Nevertheless, when this pattern was further analyzed according to month by each zone within Kuala Lumpur, two distinct patterns were observed which include a clustered pattern (R value < 1) between April to June and a dispersed pattern (R value > 1) between August and November. In addition, the mean monthly rainfall has not influenced the distribution pattern of the dengue cases. Implementation of control measures is more difficult for dispersed pattern compared to clustered pattern. From this study, it was found that distribution pattern of dengue cases in Kuala Lumpur in 2009 was spatially distributed (dispersed or clustered) rather than cases occurring randomly. It was proven that by using GIS and spatial statistic tools, we can determine the spatial distribution between dengue and population. Utilization of GIS tools is vital in assisting health agencies, epidemiologist, public health officer, town planner and relevant authorities in developing efficient control measures and contingency programmes to effectively combat dengue fever

  1. GWR-PM - Spatial variation relationship analysis with Geographically Weighted Regression (GWR) - An application at Peninsular Malaysia

    NASA Astrophysics Data System (ADS)

    Jamhuri, J.; Azhar, B. M. S.; Puan, C. L.; Norizah, K.

    2016-06-01

    GWR-PM has been developed exclusively for decision makers in Peninsular Malaysia and the purpose is to provide them with additional flexibility in analysing spatial variation. While GWR extension analysis in ArcMap application has a universal coordinate system, GWR-PM is specifically designed with Peninsular Malaysia's coordinate system of Kertau RSO Malaya Meter. This paper presents the development of GWR-PM model by using a model builder, the application of which is to examine the forest fire risk at North Selangor Peat Swamp Forest. This model can be extended and improved by using ArcGIS language of phyton.

  2. Multilevel Modelling with Spatial Interaction Effects with Application to an Emerging Land Market in Beijing, China

    PubMed Central

    Dong, Guanpeng; Harris, Richard; Jones, Kelvyn; Yu, Jianhui

    2015-01-01

    This paper develops a methodology for extending multilevel modelling to incorporate spatial interaction effects. The motivation is that classic multilevel models are not specifically spatial. Lower level units may be nested into higher level ones based on a geographical hierarchy (or a membership structure—for example, census zones into regions) but the actual locations of the units and the distances between them are not directly considered: what matters is the groupings but not how close together any two units are within those groupings. As a consequence, spatial interaction effects are neither modelled nor measured, confounding group effects (understood as some sort of contextual effect that acts ‘top down’ upon members of a group) with proximity effects (some sort of joint dependency that emerges between neighbours). To deal with this, we incorporate spatial simultaneous autoregressive processes into both the outcome variable and the higher level residuals. To assess the performance of the proposed method and the classic multilevel model, a series of Monte Carlo simulations are conducted. The results show that the proposed method performs well in retrieving the true model parameters whereas the classic multilevel model provides biased and inefficient parameter estimation in the presence of spatial interactions. An important implication of the study is to be cautious of an apparent neighbourhood effect in terms of both its magnitude and statistical significance if spatial interaction effects at a lower level are suspected. Applying the new approach to a two-level land price data set for Beijing, China, we find significant spatial interactions at both the land parcel and district levels. PMID:26086913

  3. Monitoring survival rates of landbirds at varying spatial scales: An application of the MAPS Program

    USGS Publications Warehouse

    Rosenberg, D.K.; DeSante, D.F.; Hines, J.E.

    2000-01-01

    Survivorship is a primary demographic parameter affecting population dynamics, and thus trends in species abundance. The Monitoring Avian Productivity and Survivorship (MAPS) program is a cooperative effort designed to monitor landbird demographic parameters. A principle goal of MAPS is to estimate annual survivorship and identify spatial patterns and temporal trends in these rates. We evaluated hypotheses of spatial patterns in survival rates among a collection of neighboring sampling sites, such as within national forests, among biogeographic provinces, and between breeding populations that winter in either Central or South America, and compared these geographic-specific models to a model of a common survival rate among all sampling sites. We used data collected during 1992-1995 from Swainson's Thrush (Cathorus ustulatus) populations in the western region of the United States. We evaluated the ability to detect spatial and temporal patterns of survivorship with simulated data. We found weak evidence of spatial differences in survival rates at the local scale of 'location,' which typically contained 3 mist-netting stations. There was little evidence of differences in survival rates among biogeographic provinces or between populations that winter in either Central or South America. When data were pooled for a regional estimate of survivorship, the percent relative bias due to pooling 'locations' was 12 years of monitoring. Detection of spatial patterns and temporal trends in survival rates from local to regional scales will provide important information for management and future research directed toward conservation of landbirds.

  4. Over-constraints and a unified mobility method for general spatial mechanisms Part 2: Application of the principle

    NASA Astrophysics Data System (ADS)

    Lu, Wenjuan; Zeng, Daxing; Huang, Zhen

    2016-01-01

    The pre-research on mobility analysis presented a unified-mobility formula and a methodology based on reciprocal screw theory by HUANG, which focused on classical and modern parallel mechanisms. However its range of application needs to further extend to general multi-loop spatial mechanism. This kind of mechanism is not only more complex in structure but also with strong motion coupling among loops, making the mobility analysis even more complicated, and the relevant research has long been ignored. It is focused on how to apply the new principle for general spatial mechanism to those various multi-loop spatial mechanisms, and some new meaningful knowledge is further found. Several typical examples of the general multi-loop spatial mechanisms with motion couple even strong motion couple are considered. These spatial mechanisms include different closing way: over-constraint appearing in rigid closure, in movable closure, and in dynamic closure as well; these examples also include two different new methods to solve this kind of issue: the way to recognize over-constraints by analyzing relative movement between two connected links and by constructing a virtual loop to recognize over-constraints. In addition, over-constraint determination tabulation is brought to analyze the motion couple. The researches above are all based upon the screw theory. All these multi-loop spatial mechanisms with different kinds of structures can completely be solved by following the directions and examples, and the new mobility theory based on the screw theory is also proved to be valid. This study not only enriches and develops the theory and makes the theory more universal, but also has a special meaning for innovation in mechanical engineering.

  5. A Key Concept: Spatial Organization

    ERIC Educational Resources Information Center

    Kostrowicki, Jerzy

    1975-01-01

    The application of geography to spatial planning is discussed. Concepts presented include the regional concept, the typological concept, and spatial structure, spatial processes, and spatial organization. For address of journal see SO 504 028. (Author/RM)

  6. Application of spatially distributed water and carbon flux models over the Columbia River Basin

    SciTech Connect

    Marks, D.; Turner, D.P.

    1995-06-01

    A georeferenced database at the 1 km spatial resolution was developed to initialize and drive process-based models of water and carbon flux over the Columbia River Basin (671,579 km{sup 2}). Estimates were made at each grid cell for variables including daily solar radiation, air temperature, humidity, and precipitation as climate drivers, and topographic structure, water holding capacity, vegetation type and leaf area as physical conditions. The database has been used to compare alternative algorithms for modeling evapotranspiration, carbon flux, and snow melt at the regional scale. It also provided a means to perform scaling exercises which examine the effects of spatial aggregation on model inputs and outputs. Relatively high spatial resolution analysis of biogeochemical cycling are desirable from several perspectives and may be particularly important in the study of the potential impacts of climate change.

  7. Unsupervised Spatial Event Detection in Targeted Domains with Applications to Civil Unrest Modeling

    PubMed Central

    Zhao, Liang; Chen, Feng; Dai, Jing; Hua, Ting; Lu, Chang-Tien; Ramakrishnan, Naren

    2014-01-01

    Twitter has become a popular data source as a surrogate for monitoring and detecting events. Targeted domains such as crime, election, and social unrest require the creation of algorithms capable of detecting events pertinent to these domains. Due to the unstructured language, short-length messages, dynamics, and heterogeneity typical of Twitter data streams, it is technically difficult and labor-intensive to develop and maintain supervised learning systems. We present a novel unsupervised approach for detecting spatial events in targeted domains and illustrate this approach using one specific domain, viz. civil unrest modeling. Given a targeted domain, we propose a dynamic query expansion algorithm to iteratively expand domain-related terms, and generate a tweet homogeneous graph. An anomaly identification method is utilized to detect spatial events over this graph by jointly maximizing local modularity and spatial scan statistics. Extensive experiments conducted in 10 Latin American countries demonstrate the effectiveness of the proposed approach. PMID:25350136

  8. Spatial quantile regression using INLA with applications to childhood overweight in Malawi.

    PubMed

    Mtambo, Owen P L; Masangwi, Salule J; Kazembe, Lawrence N M

    2015-04-01

    Analyses of childhood overweight have mainly used mean regression. However, using quantile regression is more appropriate as it provides flexibility to analyse the determinants of overweight corresponding to quantiles of interest. The main objective of this study was to fit a Bayesian additive quantile regression model with structured spatial effects for childhood overweight in Malawi using the 2010 Malawi DHS data. Inference was fully Bayesian using R-INLA package. The significant determinants of childhood overweight ranged from socio-demographic factors such as type of residence to child and maternal factors such as child age and maternal BMI. We observed significant positive structured spatial effects on childhood overweight in some districts of Malawi. We recommended that the childhood malnutrition policy makers should consider timely interventions based on risk factors as identified in this paper including spatial targets of interventions. PMID:26046633

  9. Violent crime in San Antonio, Texas: an application of spatial epidemiological methods.

    PubMed

    Sparks, Corey S

    2011-12-01

    Violent crimes are rarely considered a public health problem or investigated using epidemiological methods. But patterns of violent crime and other health conditions are often affected by similar characteristics of the built environment. In this paper, methods and perspectives from spatial epidemiology are used in an analysis of violent crimes in San Antonio, TX. Bayesian statistical methods are used to examine the contextual influence of several aspects of the built environment. Additionally, spatial regression models using Bayesian model specifications are used to examine spatial patterns of violent crime risk. Results indicate that the determinants of violent crime depend on the model specification, but are primarily related to the built environment and neighborhood socioeconomic conditions. Results are discussed within the context of a rapidly growing urban area with a diverse population. PMID:22748228

  10. Application of adaptive optics in complicated and integrated spatial multisensor system and its measurement analysis

    NASA Astrophysics Data System (ADS)

    Ding, Quanxin; Guo, Chunjie; Cai, Meng; Liu, Hua

    2007-12-01

    Adaptive Optics Expand System is a kind of new concept spatial equipment, which concerns system, cybernetics and informatics deeply, and is key way to improve advanced sensors ability. Traditional Zernike Phase Contrast Method is developed, and Accelerated High-level Phase Contrast Theory is established. Integration theory and mathematical simulation is achieved. Such Equipment, which is based on some crucial components, such as, core optical system, multi mode wavefront sensor and so on, is established for AOES advantageous configuration and global design. Studies on Complicated Spatial Multisensor System Integratation and measurement Analysis including error analysis are carried out.

  11. A multi-equation spatial econometric model, with application to EU manufacturing productivity growth

    NASA Astrophysics Data System (ADS)

    Fingleton, Bernard

    2007-06-01

    A multi-equation spatial econometric model is used to explain variations across EU regions in manufacturing productivity growth based on recent theoretical developments in urban economics and economic geography. The paper shows that temporal and spatial parameter homogeneity is an unrealistic assumption, contrary to what is typically assumed in the literature. Constraints are imposed on parameters across time periods and between core and peripheral regions of the EU, with the significant loss of fit providing overwhelming evidence of parameter heterogeneity, although the final model does highlight increasing returns to scale, which is a central feature of contemporary theory.

  12. Application of spatially referenced regression modeling for the evaluation of total nitrogen loading in the Chesapeake Bay watershed

    USGS Publications Warehouse

    Preston, Stephen D.; Brakebill, John W.

    1999-01-01

    The reduction of stream nutrient loads is an important part of current efforts to improve water quality in the Chesapeake Bay. To design programs that will effectively reduce stream nutrient loading, resource managers need spatially detailed information that describes the location of nutrient sources and the watershed factors that affect delivery of nutrients to the Bay. To address this need, the U.S. Geological Survey has developed a set of spatially referenced regression models for the evaluation of nutrient loading in the watershed. The technique applied for this purpose is referred to as ?SPARROW? (SPAtially Referenced Regressions On Watershed attributes), which is a statistical modeling approach that retains spatial referencing for illustrating predictions, and for relating upstream nutrient sources to downstream nutrient loads. SPARROW is based on a digital stream-network data set that is composed of stream segments (reaches) that are attributed with traveltime and connectivity information. Drainage-basin boundaries are defined for each stream reach in the network data set through the use of a digital elevation model. For the Chesapeake Bay watershed, the spatial network was developed using the U.S. Environmental Protection Agency?s River Reach File 1 digital stream network, and is composed of 1,408 stream reaches and watershed segments. To develop a SPARROW model for total nitrogen in the Chesapeake Bay watershed, data sets for sources and basin characteristics were incorporated into the spatial network and related to stream-loading information by using a nonlinear regression model approach. Total nitrogen source variables that were statistically significant in the model include point sources, urban area, fertilizer application, manure generation and atmospheric deposition. Total nitrogen loss variables that were significant in the model include soil permeability and instream-loss rates for four stream-reach classes. Applications of SPARROW for evaluating

  13. Integration of high-resolution spatial and spectral data acquisition systems to provide complementary datasets for cultural heritage applications

    NASA Astrophysics Data System (ADS)

    Simon, Camille; Huxhagen, Uwe; Mansouri, Alamin; Heritage, Adrian; Boochs, Frank; Marzani, Franck S.

    2010-02-01

    Modern optical measuring systems are able to record objects with high spatial and spectral precision. The acquisition of spatial data is possible with resolutions of a few hundredths of a millimeter using active projection-based camera systems, while spectral data can be obtained using filter-based multispectral camera systems that can capture surface spectral reflectance with high spatial resolution. We present a methodology for combining data from these two discrete optical measuring systems by registering their individual measurements into a common geometrical frame. Furthermore, the potential for its application as a tool for the non-invasive monitoring of paintings and polychromy is evaluated. The integration of time-referenced spatial and spectral datasets is beneficial to record and monitor cultural heritage. This enables the type and extent of surface and colorimetric change to be precisely characterized and quantified over time. Together, these could facilitate the study of deterioration mechanisms or the efficacy of conservation treatments by measuring the rate, type, and amount of change over time. An interdisciplinary team of imaging scientists and art scholars was assembled to undertake a trial program of repeated data acquisitions of several valuable historic surfaces of cultural heritage objects. The preliminary results are presented and discussed.

  14. An impedance method for spatial sensing of 3D cell constructs--towards applications in tissue engineering.

    PubMed

    Canali, C; Mazzoni, C; Larsen, L B; Heiskanen, A; Martinsen, Ø G; Wolff, A; Dufva, M; Emnéus, J

    2015-09-01

    We present the characterisation and validation of multiplexed 4-terminal (4T) impedance measurements as a method for sensing the spatial location of cell aggregates within large three-dimensional (3D) gelatin scaffolds. The measurements were performed using an array of four rectangular chambers, each having eight platinum needle electrodes for parallel analysis. The electrode positions for current injection and voltage measurements were optimised by means of finite element simulations to maximise the sensitivity field distribution and spatial resolution. Eight different 4T combinations were experimentally tested in terms of the spatial sensitivity. The simulated sensitivity fields were validated using objects (phantoms) with different conductivity and size placed in different positions inside the chamber. This provided the detection limit (volume sensitivity) of 16.5%, i.e. the smallest detectable volume with respect to the size of the measurement chamber. Furthermore, the possibility for quick single frequency analysis was demonstrated by finding a common frequency of 250 kHz for all the presented electrode combinations. As final proof of concept, a high density of human hepatoblastoma (HepG2) cells were encapsulated in gelatin to form artificial 3D cell constructs and detected when placed in different positions inside large gelatin scaffolds. Taken together, these results open new perspectives for impedance-based sensing technologies for non-invasive monitoring in tissue engineering applications providing spatial information of constructs within biologically relevant 3D environments. PMID:26198701

  15. SPHARA - A Generalized Spatial Fourier Analysis for Multi-Sensor Systems with Non-Uniformly Arranged Sensors: Application to EEG

    PubMed Central

    Graichen, Uwe; Eichardt, Roland; Fiedler, Patrique; Strohmeier, Daniel; Zanow, Frank; Haueisen, Jens

    2015-01-01

    Important requirements for the analysis of multichannel EEG data are efficient techniques for signal enhancement, signal decomposition, feature extraction, and dimensionality reduction. We propose a new approach for spatial harmonic analysis (SPHARA) that extends the classical spatial Fourier analysis to EEG sensors positioned non-uniformly on the surface of the head. The proposed method is based on the eigenanalysis of the discrete Laplace-Beltrami operator defined on a triangular mesh. We present several ways to discretize the continuous Laplace-Beltrami operator and compare the properties of the resulting basis functions computed using these discretization methods. We apply SPHARA to somatosensory evoked potential data from eleven volunteers and demonstrate the ability of the method for spatial data decomposition, dimensionality reduction and noise suppression. When employing SPHARA for dimensionality reduction, a significantly more compact representation can be achieved using the FEM approach, compared to the other discretization methods. Using FEM, to recover 95% and 99% of the total energy of the EEG data, on average only 35% and 58% of the coefficients are necessary. The capability of SPHARA for noise suppression is shown using artificial data. We conclude that SPHARA can be used for spatial harmonic analysis of multi-sensor data at arbitrary positions and can be utilized in a variety of other applications. PMID:25885290

  16. Digital Hydrologic Networks Supporting Applications Related to Spatially Referenced Regression Modeling

    USGS Publications Warehouse

    Brakebill, J.W.; Wolock, D.M.; Terziotti, S.E.

    2011-01-01

    Digital hydrologic networks depicting surface-water pathways and their associated drainage catchments provide a key component to hydrologic analysis and modeling. Collectively, they form common spatial units that can be used to frame the descriptions of aquatic and watershed processes. In addition, they provide the ability to simulate and route the movement of water and associated constituents throughout the landscape. Digital hydrologic networks have evolved from derivatives of mapping products to detailed, interconnected, spatially referenced networks of water pathways, drainage areas, and stream and watershed characteristics. These properties are important because they enhance the ability to spatially evaluate factors that affect the sources and transport of water-quality constituents at various scales. SPAtially Referenced Regressions On Watershed attributes (SPARROW), a process-based/statistical model, relies on a digital hydrologic network in order to establish relations between quantities of monitored contaminant flux, contaminant sources, and the associated physical characteristics affecting contaminant transport. Digital hydrologic networks modified from the River Reach File (RF1) and National Hydrography Dataset (NHD) geospatial datasets provided frameworks for SPARROW in six regions of the conterminous United States. In addition, characteristics of the modified RF1 were used to update estimates of mean-annual streamflow. This produced more current flow estimates for use in SPARROW modeling. ?? 2011 American Water Resources Association. This article is a U.S. Government work and is in the public domain in the USA.

  17. Digital hydrologic networks supporting applications related to spatially referenced regression modeling

    USGS Publications Warehouse

    Brakebill, John W.; Wolock, David M.; Terziotti, Silvia

    2011-01-01

    Digital hydrologic networks depicting surface-water pathways and their associated drainage catchments provide a key component to hydrologic analysis and modeling. Collectively, they form common spatial units that can be used to frame the descriptions of aquatic and watershed processes. In addition, they provide the ability to simulate and route the movement of water and associated constituents throughout the landscape. Digital hydrologic networks have evolved from derivatives of mapping products to detailed, interconnected, spatially referenced networks of water pathways, drainage areas, and stream and watershed characteristics. These properties are important because they enhance the ability to spatially evaluate factors that affect the sources and transport of water-quality constituents at various scales. SPAtially Referenced Regressions On Watershed attributes (SPARROW), a process-based ⁄ statistical model, relies on a digital hydrologic network in order to establish relations between quantities of monitored contaminant flux, contaminant sources, and the associated physical characteristics affecting contaminant transport. Digital hydrologic networks modified from the River Reach File (RF1) and National Hydrography Dataset (NHD) geospatial datasets provided frameworks for SPARROW in six regions of the conterminous United States. In addition, characteristics of the modified RF1 were used to update estimates of mean-annual streamflow. This produced more current flow estimates for use in SPARROW modeling.

  18. Digital Hydrologic Networks Supporting Applications Related to Spatially Referenced Regression Modeling1

    PubMed Central

    Brakebill, JW; Wolock, DM; Terziotti, SE

    2011-01-01

    Abstract Digital hydrologic networks depicting surface-water pathways and their associated drainage catchments provide a key component to hydrologic analysis and modeling. Collectively, they form common spatial units that can be used to frame the descriptions of aquatic and watershed processes. In addition, they provide the ability to simulate and route the movement of water and associated constituents throughout the landscape. Digital hydrologic networks have evolved from derivatives of mapping products to detailed, interconnected, spatially referenced networks of water pathways, drainage areas, and stream and watershed characteristics. These properties are important because they enhance the ability to spatially evaluate factors that affect the sources and transport of water-quality constituents at various scales. SPAtially Referenced Regressions On Watershed attributes (SPARROW), a process-based/statistical model, relies on a digital hydrologic network in order to establish relations between quantities of monitored contaminant flux, contaminant sources, and the associated physical characteristics affecting contaminant transport. Digital hydrologic networks modified from the River Reach File (RF1) and National Hydrography Dataset (NHD) geospatial datasets provided frameworks for SPARROW in six regions of the conterminous United States. In addition, characteristics of the modified RF1 were used to update estimates of mean-annual streamflow. This produced more current flow estimates for use in SPARROW modeling. PMID:22457575

  19. Dynamic spatially-explicit mass-balance modeling for targeted watershed phosphorus management II: Model Application

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Cost-effective nonpoint source phosphorus (P) control should target the land areas at greatest risk for P loss. We combined mass-balance modeling and geographic analysis to identify and map high-risk areas for P export by integrating long-term P input/output accounting with spatially variable physi...

  20. Digital Hydrologic Networks Supporting Applications Related to Spatially Referenced Regression Modeling.

    PubMed

    Brakebill, Jw; Wolock, Dm; Terziotti, Se

    2011-10-01

    Digital hydrologic networks depicting surface-water pathways and their associated drainage catchments provide a key component to hydrologic analysis and modeling. Collectively, they form common spatial units that can be used to frame the descriptions of aquatic and watershed processes. In addition, they provide the ability to simulate and route the movement of water and associated constituents throughout the landscape. Digital hydrologic networks have evolved from derivatives of mapping products to detailed, interconnected, spatially referenced networks of water pathways, drainage areas, and stream and watershed characteristics. These properties are important because they enhance the ability to spatially evaluate factors that affect the sources and transport of water-quality constituents at various scales. SPAtially Referenced Regressions On Watershed attributes (SPARROW), a process-based/statistical model, relies on a digital hydrologic network in order to establish relations between quantities of monitored contaminant flux, contaminant sources, and the associated physical characteristics affecting contaminant transport. Digital hydrologic networks modified from the River Reach File (RF1) and National Hydrography Dataset (NHD) geospatial datasets provided frameworks for SPARROW in six regions of the conterminous United States. In addition, characteristics of the modified RF1 were used to update estimates of mean-annual streamflow. This produced more current flow estimates for use in SPARROW modeling. PMID:22457575

  1. Estimation and Application of Spatially Variable Noise Fields in Diffusion Tensor Imaging

    PubMed Central

    Landman, Bennett A.; Bazin, Pierre-Louis; Prince, Jerry L.

    2009-01-01

    Optimal interpretation of magnetic resonance image content often requires an estimate of the underlying image noise, which is typically realized as a spatially invariant estimate of the noise distribution. This is not an ideal practice in diffusion tensor imaging because the noise distribution is usually spatially varying due to the use of fast imaging and noise suppression techniques. A new estimation approach for spatially varying noise fields is proposed in this article. The approach is based on a noise invariance property in scenarios in which more than one image, each with potentially different signal levels, are acquired on each slice, as in diffusion weighted MRI. This technique leads to improved noise field estimates in simulations, phantom experiments and in vivo studies when compared to traditional noise field estimators that use regional variability or background intensity histograms. The proposed method reduces the noise field estimation error by a factor of 100 in simulations, shows a strong linear correlation (R2 = 0.99) between theoretical and estimated noise changes in phantoms, and demonstrates consistent (<5% variability) noise field estimates in vivo. The advantages of spatially varying noise field estimation are demonstrated for power analysis, outlier detection, and tensor estimation. PMID:19250784

  2. Application of spatial pedotransfer functions to understand soil modulation of vegetation response to climate

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A fundamental knowledge gap in understanding land-atmosphere interactions is accurate, high resolution spatial representation of soil physical and hydraulic properties. We present a novel approach to predict hydraulic soil parameters by combining digital soil mapping techniques with pedotransfer fun...

  3. Assessing applicability of SWAT calibrated at multiple spatial scales from field to stream

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The capability of SWAT for simulating long-term hydrology and water quality was evaluated using data collected in subwatershed K of the Little River Experimental watershed located in South Atlantic Coastal Plain of the USA. The SWAT model was calibrated to measurements made at various spatial scales...

  4. Bayesian two-part spatial models for semicontinuous data with application to emergency department expenditures.

    PubMed

    Neelon, Brian; Zhu, Li; Neelon, Sara E Benjamin

    2015-07-01

    In health services research, it is common to encounter semicontinuous data characterized by a point mass at zero and a continuous distribution of positive values. Examples include medical expenditures, in which the zeros represent patients who do not use health services, while the continuous distribution describes the level of expenditures among users. Semicontinuous data are customarily analyzed using two-part mixture models. In the spatial analysis of semicontinuous data, two-part models are especially appealing because they provide a joint picture of how health services utilization and associated expenditures vary across geographic regions. However, when applying these models, careful attention must be paid to distributional choices, as model misspecification can lead to biased and imprecise inferences. This paper introduces a broad class of Bayesian two-part models for the spatial analysis of semicontinuous data. Specific models considered include two-part lognormal, log skew-elliptical, and Bayesian non-parametric models. Multivariate conditionally autoregressive priors are used to link model components and provide spatial smoothing across neighboring regions, resulting in a joint spatial modeling framework for health utilization and expenditures. We develop a fully conjugate Gibbs sampling scheme, leading to efficient posterior computation. We illustrate the approach using data from a recent study of emergency department expenditures. PMID:25649743

  5. Spatial variation of earthquake ground motion for application to soil-structure interaction

    SciTech Connect

    Abrahamson, N. )

    1992-03-01

    The spatial variation of strong ground motion from fifteen earthquakes recorded by the Lotung LSST strong motion array is analyzed. The earthquakes range in magnitude from 3.7 to 7.8 and in source distance from 4 to 80 km. In all a total of 533 station pairs are used with station separations ranging from 60 to 85 meters. The spatial variation of ground motion is divided into two parts: variation in the fourier phase (coherence), and variation in the Fourier amplitude. Empirical functions describing the frequency and separation distance dependence of the coherency and amplitude variation appropriate for use in engineering analyses are derived. Taken together, the spatial variation functions given in this study provide a complete description of the statistical properties of the horizontal components of the seismic wavefield assuming plane wave propagation for the S-wave window. Since the S-waves generally cause the largest shaking, these spatial variation functions are appropriate for use in engineering analyses of large structures.

  6. Spatial variation of earthquake ground motion for application to soil-structure interaction. Final report

    SciTech Connect

    Abrahamson, N.

    1992-03-01

    The spatial variation of strong ground motion from fifteen earthquakes recorded by the Lotung LSST strong motion array is analyzed. The earthquakes range in magnitude from 3.7 to 7.8 and in source distance from 4 to 80 km. In all a total of 533 station pairs are used with station separations ranging from 60 to 85 meters. The spatial variation of ground motion is divided into two parts: variation in the fourier phase (coherence), and variation in the Fourier amplitude. Empirical functions describing the frequency and separation distance dependence of the coherency and amplitude variation appropriate for use in engineering analyses are derived. Taken together, the spatial variation functions given in this study provide a complete description of the statistical properties of the horizontal components of the seismic wavefield assuming plane wave propagation for the S-wave window. Since the S-waves generally cause the largest shaking, these spatial variation functions are appropriate for use in engineering analyses of large structures.

  7. Application of spatial cross correlation to detection of migration of submarine sand dunes

    NASA Astrophysics Data System (ADS)

    Duffy, Garret P.; Hughes-Clarke, John E.

    2005-12-01

    Knowledge of migration rates of bedforms provides an indirect indication of the behavior of tidally averaged bottom currents, enables optimization of hydrographic survey frequency and may enable calculation of bedload transport rate. To measure bedform migration rate, we test the use of spatial correlation as a measurement method, which quantifies and locates a region of maximum similarity between two spatial variables. For the latter, we use consecutive eight-bit images of spatial gradient, derived from bathymetric digital terrain models, carrying out the correlation over this representation of the shape of the seabed rather than the bathymetric surface. The digital terrain models were compiled from six repeat multibeam surveys of a headland-associated bank near Saint John, New Brunswick, with a roughly 30-day interval. Vectors are drawn depicting the movement of a sand dune at time t0 toward a point in the spatial correlation array at a later time, t1. A number of different techniques of picking the end of the migration vector were used. The sinuosity of the dune crest at the scale of the correlation window has an impact on which migration vector is the better pick. Averaging of migration vectors from consecutive epochs diminishes random errors in the correlation picks using any single pair of images and creates a more accurate picture of the migration field. Migration rates and crest-relative migration directions vary substantially across the sand bank, reflecting the high gradients in bottom shear stress around the headland.

  8. An Analysis of Spatial Configuration and its Application to Research in Higher Education.

    ERIC Educational Resources Information Center

    Cole, Nancy S.; Cole, James W. L.

    This paper presents an analysis of the spatial configuration of variables in a multivariate system. The purpose of the analysis is to make clearer the relationships among the variables by locating them in a minimally-dimensioned space. Similarly, individuals are located in the smaller space and related to each other on the basis of the variables…

  9. SU-E-P-30: Clinical Applications of Spatially Fractionated Radiation Therapy (GRID) Using Helical Tomotherapy

    SciTech Connect

    Zhang, X; Liang, X; Penagaricano, J; Morrill, S; Corry, P; Paudel, N; Vaneerat, V Ratanatharathorn; Yan, Y; Griffin, R

    2015-06-15

    Purpose: To present the first clinical applications of Helical Tomotherapy-based spatially fractionated radiotherapy (HT-GRID) for deep seated tumors and associated dosimetric study. Methods: Ten previously treated GRID patients were selected (5 HT-GRID and 5 LINAC-GRID using a commercially available GRID block). Each case was re-planned either in HT-GRID or LINAC-GRID for a total of 10 plans for both techniques using same prescribed dose of 20 Gy to maximum point dose of GRID GTV. For TOMO-GRID, a programmable virtual TOMOGRID template mimicking a GRID pattern was generated. Dosimetric parameters compared included: GRID GTV mean dose (Dmean) and equivalent uniform dose (EUD), GRID GTV dose inhomogeneity (Ratio(valley/peak)), normal tissue Dmean and EUD, and other organs-at-risk(OARs) doses. Results: The median tumor volume was 634 cc, ranging from 182 to 4646 cc. Median distance from skin to the deepest part of tumor was 22cm, ranging from 8.9 to 38cm. The median GRID GTV Dmean and EUD was 10.65Gy (9.8–12.5Gy) and 7.62Gy (4.31–11.06Gy) for HT-GRID and was 6.73Gy (4.44–8.44Gy) and 3.95Gy (0.14–4.2Gy) for LINAC-GRID. The median Ratio(valley/peak) was 0.144(0.05–0.29) for HT-GRID and was 0.055(0.0001–0.14) for LINAC-GRID. For normal tissue in HT-GRID, the median Dmean and EUD was 1.24Gy (0.34–2.54Gy) and 5.45 Gy(3.45–6.89Gy) and was 0.61 Gy(0.11–1.52Gy) and 6Gy(4.45–6.82Gy) for LINAC-GRID. The OAR doses were comparable between the HT-GRID and LINAC-GRID. However, in some cases it was not possible to avoid a critical structure in LINAC-GRID; while HT-GRID can spare more tissue doses for certain critical structures. Conclusion: HT-GRID delivers higher GRID GTV Dmean, EUD and Ratio(valley/peak) compared to LINAC-GRID. HT-GRID delivers higher Dmean and lower EUD for normal tissue compared to LINAC-GRID. TOMOGRID template can be highly patient-specific and allows adjustment of the GRID pattern to different tumor sizes and shapes when they are deeply

  10. A Novel Fixed Low-Rank Constrained EEG Spatial Filter Estimation with Application to Movie-Induced Emotion Recognition

    PubMed Central

    Suyama, Takayuki

    2016-01-01

    This paper proposes a novel fixed low-rank spatial filter estimation for brain computer interface (BCI) systems with an application that recognizes emotions elicited by movies. The proposed approach unifies such tasks as feature extraction, feature selection, and classification, which are often independently tackled in a “bottom-up” manner, under a regularized loss minimization problem. The loss function is explicitly derived from the conventional BCI approach and solves its minimization by optimization with a nonconvex fixed low-rank constraint. For evaluation, an experiment was conducted to induce emotions by movies for dozens of young adult subjects and estimated the emotional states using the proposed method. The advantage of the proposed method is that it combines feature selection, feature extraction, and classification into a monolithic optimization problem with a fixed low-rank regularization, which implicitly estimates optimal spatial filters. The proposed method shows competitive performance against the best CSP-based alternatives. PMID:27597862

  11. A Novel Fixed Low-Rank Constrained EEG Spatial Filter Estimation with Application to Movie-Induced Emotion Recognition.

    PubMed

    Yano, Ken; Suyama, Takayuki

    2016-01-01

    This paper proposes a novel fixed low-rank spatial filter estimation for brain computer interface (BCI) systems with an application that recognizes emotions elicited by movies. The proposed approach unifies such tasks as feature extraction, feature selection, and classification, which are often independently tackled in a "bottom-up" manner, under a regularized loss minimization problem. The loss function is explicitly derived from the conventional BCI approach and solves its minimization by optimization with a nonconvex fixed low-rank constraint. For evaluation, an experiment was conducted to induce emotions by movies for dozens of young adult subjects and estimated the emotional states using the proposed method. The advantage of the proposed method is that it combines feature selection, feature extraction, and classification into a monolithic optimization problem with a fixed low-rank regularization, which implicitly estimates optimal spatial filters. The proposed method shows competitive performance against the best CSP-based alternatives. PMID:27597862

  12. Evaluation of geostatistical estimators and their applicability to characterise the spatial patterns of recreational fishing catch rates

    PubMed Central

    Aidoo, Eric N.; Mueller, Ute; Goovaerts, Pierre; Hyndes, Glenn A.

    2015-01-01

    Western Australians are heavily engaged in recreational fishing activities with a participation rate of approximately 30%. An accurate estimation of the spatial distribution of recreational catch per unit effort (catch rates) is an integral component for monitoring fish population changes and to develop strategies for ecosystem-based marine management. Geostatistical techniques such as kriging can provide useful tools for characterising the spatial distributions of recreational catch rates. However, most recreational fishery data are highly skewed, zero-inflated and when expressed as ratios are impacted by the small number problem which can influence the estimates obtained from the traditional kriging. The applicability of ordinary, indicator and Poisson kriging to recreational catch rate data was evaluated for three aquatic species with different behaviours and distribution patterns. The prediction performance of each estimator was assessed based on cross-validation. For all three species, the accuracy plot of the indicator kriging (IK) showed a better agreement between expected and empirical proportions of catch rate data falling within probability intervals of increasing size, as measured by the goodness statistic. Also, indicator kriging was found to be better in predicting the latent catch rate for the three species compared to ordinary and Poisson kriging. For each species, the spatial maps from the three estimators displayed similar patterns but Poisson kriging produced smoother spatial distributions. We show that the IK estimator may be preferable for the spatial modelling of catch rate data exhibiting these characteristics, and has the best prediction performance regardless of the life history and distribution patterns of those three species. PMID:26120221

  13. Mutual information spectrum for selection of event-related spatial components. Application to eloquent motor cortex mapping

    PubMed Central

    Ossadtchi, Alexei; Pronko, Platon; Baillet, Sylvain; Pflieger, Mark E.; Stroganova, Tatiana

    2014-01-01

    Spatial component analysis is often used to explore multidimensional time series data whose sources cannot be measured directly. Several methods may be used to decompose the data into a set of spatial components with temporal loadings. Component selection is of crucial importance, and should be supported by objective criteria. In some applications, the use of a well defined component selection criterion may provide for automation of the analysis. In this paper we describe a novel approach for ranking of spatial components calculated from the EEG or MEG data recorded within evoked response paradigm. Our method is called Mutual Information (MI) Spectrum and is based on gauging the amount of MI of spatial component temporal loadings with a synthetically created reference signal. We also describe the appropriate randomization based statistical assessment scheme that can be used for selection of components with statistically significant amount of MI. Using simulated data with realistic trial to trial variations and SNR corresponding to the real recordings we demonstrate the superior performance characteristics of the described MI based measure as compared to a more conventionally used power driven gauge. We also demonstrate the application of the MI Spectrum for the selection of task-related independent components from real MEG data. We show that the MI spectrum allows to identify task-related components reliably in a consistent fashion, yielding stable results even from a small number of trials. We conclude that the proposed method fits naturally the information driven nature of ICA and can be used for routine and automatic ranking of independent components calculated from the functional neuroimaging data collected within event-related paradigms. PMID:24478692

  14. High-fidelity spatially resolved multiphoton counting for quantum imaging applications.

    PubMed

    Chrapkiewicz, Radosław; Wasilewski, Wojciech; Banaszek, Konrad

    2014-09-01

    We present a method for spatially resolved multiphoton counting based on an intensified camera with the retrieval of multimode photon statistics fully accounting for nonlinearities in the detection process. The scheme relies on one-time quantum tomographic calibration of the detector. Faithful, high-fidelity reconstruction of single- and two-mode statistics of multiphoton states is demonstrated for coherent states and their statistical mixtures. The results consistently exhibit classical values of the Mandel parameter and the noise reduction factor in contrast to raw statistics of camera photo-events. Detector operation is reliable for illumination levels up to the average of one detected photon per an event area-substantially higher than in previous approaches to characterize quantum statistical properties of light with spatial resolution. PMID:25166081

  15. Spatial glass transition temperature variations in polymer glass: application to a maltodextrin-water system.

    PubMed

    van Sleeuwen, Rutger M T; Zhang, Suying; Normand, Valéry

    2012-03-12

    A model was developed to predict spatial glass transition temperature (T(g)) distributions in glassy maltodextrin particles during transient moisture sorption. The simulation employed a numerical mass transfer model with a concentration dependent apparent diffusion coefficient (D(app)) measured using Dynamic Vapor Sorption. The mass average moisture content increase and the associated decrease in T(g) were successfully modeled over time. Large spatial T(g) variations were predicted in the particle, resulting in a temporary broadening of the T(g) region. Temperature modulated differential scanning calorimetry confirmed that the variation in T(g) in nonequilibrated samples was larger than in equilibrated samples. This experimental broadening was characterized by an almost doubling of the T(g) breadth compared to the start of the experiment. Upon reaching equilibrium, both the experimental and predicted T(g) breadth contracted back to their initial value. PMID:22268547

  16. A Bayesian network approach to knowledge integration and representation of farm irrigation: 3. Spatial application

    NASA Astrophysics Data System (ADS)

    Robertson, D. E.; Wang, Q. J.; McAllister, A. T.; Abuzar, M.; Malano, H. M.; Etchells, T.

    2009-02-01

    Catchment managers are interested in understanding impacts of the management options they promote at both farm and regional scales. In this third paper of this series, we use Inteca-Farm, a Bayesian network model of farm irrigation in the Shepparton Irrigation Region of northern Victoria, Australia, to assess the current condition of management outcome measures and the impact of historical and future management intervention. To help overcome difficulties in comprehending modeling results that are expressed as probability distributions, to capture uncertainties, we introduce methods to spatially display and compare the output from Bayesian network models and to use these methods to compare model predictions for three management scenarios. Model predictions suggest that management intervention has made a substantial improvement to the condition of management outcome measures and that further improvements are possible. The results highlight that the management impacts are spatially variable, which demonstrates that farm modeling can provide valuable evidence in substantiating the impact of catchment management intervention.

  17. Extending Lkn Climate Regionalization with Spatial Regularization: AN Application to Epidemiological Research

    NASA Astrophysics Data System (ADS)

    Liss, Alexander; Gel, Yulia R.; Kulinkina, Alexandra; Naumova, Elena N.

    2016-06-01

    Regional climate is a critical factor in public health research, adaptation studies, climate change burden analysis, and decision support frameworks. Existing climate regionalization schemes are not well suited for these tasks as they rarely take population density into account. In this work, we are extending our recently developed method for automated climate regionalization (LKN-method) to incorporate the spatial features of target population. The LKN method consists of the data limiting step (L-step) to reduce dimensionality by applying principal component analysis, a classification step (K-step) to produce hierarchical candidate regions using k-means unsupervised classification algorithm, and a nomination step (N-step) to determine the number of candidate climate regions using cluster validity indexes. LKN method uses a comprehensive set of multiple satellite data streams, arranged as time series, and allows us to define homogeneous climate regions. The proposed approach extends the LKN method to include regularization terms reflecting the spatial distribution of target population. Such tailoring allows us to determine the optimal number and spatial distribution of climate regions and thus, to ensure more uniform population coverage across selected climate categories. We demonstrate how the extended LKN method produces climate regionalization can be better tailored to epidemiological research in the context of decision support framework.

  18. Spatial Analysis and GIS Applications for Estimating Monthly Rainfall Totals on Mauritius

    NASA Astrophysics Data System (ADS)

    Staub, C. G.; Stevens, F. R.; Waylen, P. R.

    2015-12-01

    Reliable gridded rainfall data are critical for GIS-based climate change impact assessments, water resources planning and management, design of hydraulic works and urban development. Small Island Developing States (SIDS) are highly dependent on rainfall, more sensitive, and have a lower adaptive capacity to climate change than mainland countries yet are poorly studied. Extensive hydrometeorological records exist in Mauritius, offering a unique opportunity to model rainfall distribution and produce high resolution gridded datasets for GIS-based models. Multiple regression is used to model mean annual and monthly rainfall on the island for the period 1997 - 2011 and derive a physical basis for understanding spatial rainfall patterns. The models incorporate latitude, longitude, slope, distance to coast, elevation and their interactions accounting for 68% of the variance in mean annual rainfall and 55-72% of variance in mean monthly rainfall across the island. Spatial trends are removed from observed monthly rainfall totals and ordinary kriging is applied to the residuals. The regression and kriging results are combined to produce a high resolution, physically consistent gridded time-series dataset. Estimate and variance values from each month are then used to calculate 95% confidence interval surfaces. Cross-validation reveals close correspondence between predicted and observed values. This regression kriging approach captures what is currently understood about the spatial and temporal variability of precipitation in this mountainous sub-tropical location, giving us greater confidence in the reliability of the new rainfall estimates.

  19. Spatial rule-based modeling: a method and its application to the human mitotic kinetochore.

    PubMed

    Ibrahim, Bashar; Henze, Richard; Gruenert, Gerd; Egbert, Matthew; Huwald, Jan; Dittrich, Peter

    2013-01-01

    A common problem in the analysis of biological systems is the combinatorial explosion that emerges from the complexity of multi-protein assemblies. Conventional formalisms, like differential equations, Boolean networks and Bayesian networks, are unsuitable for dealing with the combinatorial explosion, because they are designed for a restricted state space with fixed dimensionality. To overcome this problem, the rule-based modeling language, BioNetGen, and the spatial extension, SRSim, have been developed. Here, we describe how to apply rule-based modeling to integrate experimental data from different sources into a single spatial simulation model and how to analyze the output of that model. The starting point for this approach can be a combination of molecular interaction data, reaction network data, proximities, binding and diffusion kinetics and molecular geometries at different levels of detail. We describe the technique and then use it to construct a model of the human mitotic inner and outer kinetochore, including the spindle assembly checkpoint signaling pathway. This allows us to demonstrate the utility of the procedure, show how a novel perspective for understanding such complex systems becomes accessible and elaborate on challenges that arise in the formulation, simulation and analysis of spatial rule-based models. PMID:24709796

  20. In Vivo Application of Short-Lag Spatial Coherence Imaging in Human Liver

    PubMed Central

    Jakovljevic, Marko; Trahey, Gregg E.; Nelson, Rendon C.; Dahl, Jeremy J.

    2013-01-01

    We present the results of a patient study conducted to assess the performance of two novel imaging methods, namely Short-Lag Spatial Coherence (SLSC) and Harmonic Spatial Coherence Imaging (HSCI), in in vivo liver environment. Similar in appearance to the B-mode images, SLSC and HSCI images are based solely on the spatial coherence of fundamental and harmonic echo data, respectively, and do not depend on the echo magnitude. SLSC and HSCI suppress incoherent echo signals and thus tend to reduce clutter. The SLSC and HSCI images of 17 patients demonstrate sharper delineation of blood vessel walls, suppressed clutter inside the vessel lumen, and show reduced speckle in surrounding tissue compared to matched B-modes. Target contrast and contrast-to-noise ratio (CNR) show statistically significant improvements between fundamental B-mode and SLSC imaging and between harmonic B-mode and HSCI imaging (in all cases p < 0.01). The magnitude of improvement in contrast and CNR increases as the overall quality of B-mode images decreases. Poor quality fundamental B-mode images (where image quality classification is based on both contrast and CNR) exhibit the highest improvements in both contrast and CNR (288 % improvement in contrast and 533 % improvement in CNR). PMID:23347642

  1. Spatial Rule-Based Modeling: A Method and Its Application to the Human Mitotic Kinetochore

    PubMed Central

    Ibrahim, Bashar; Henze, Richard; Gruenert, Gerd; Egbert, Matthew; Huwald, Jan; Dittrich, Peter

    2013-01-01

    A common problem in the analysis of biological systems is the combinatorial explosion that emerges from the complexity of multi-protein assemblies. Conventional formalisms, like differential equations, Boolean networks and Bayesian networks, are unsuitable for dealing with the combinatorial explosion, because they are designed for a restricted state space with fixed dimensionality. To overcome this problem, the rule-based modeling language, BioNetGen, and the spatial extension, SRSim, have been developed. Here, we describe how to apply rule-based modeling to integrate experimental data from different sources into a single spatial simulation model and how to analyze the output of that model. The starting point for this approach can be a combination of molecular interaction data, reaction network data, proximities, binding and diffusion kinetics and molecular geometries at different levels of detail. We describe the technique and then use it to construct a model of the human mitotic inner and outer kinetochore, including the spindle assembly checkpoint signaling pathway. This allows us to demonstrate the utility of the procedure, show how a novel perspective for understanding such complex systems becomes accessible and elaborate on challenges that arise in the formulation, simulation and analysis of spatial rule-based models. PMID:24709796

  2. Visualization and Analysis of Wireless Sensor Network Data for Smart Civil Structure Applications Based On Spatial Correlation Technique

    NASA Astrophysics Data System (ADS)

    Chowdhry, Bhawani Shankar; White, Neil M.; Jeswani, Jai Kumar; Dayo, Khalil; Rathi, Manorma

    2009-07-01

    Disasters affecting infrastructure, such as the 2001 earthquakes in India, 2005 in Pakistan, 2008 in China and the 2004 tsunami in Asia, provide a common need for intelligent buildings and smart civil structures. Now, imagine massive reductions in time to get the infrastructure working again, realtime information on damage to buildings, massive reductions in cost and time to certify that structures are undamaged and can still be operated, reductions in the number of structures to be rebuilt (if they are known not to be damaged). Achieving these ideas would lead to huge, quantifiable, long-term savings to government and industry. Wireless sensor networks (WSNs) can be deployed in buildings to make any civil structure both smart and intelligent. WSNs have recently gained much attention in both public and research communities because they are expected to bring a new paradigm to the interaction between humans, environment, and machines. This paper presents the deployment of WSN nodes in the Top Quality Centralized Instrumentation Centre (TQCIC). We created an ad hoc networking application to collect real-time data sensed from the nodes that were randomly distributed throughout the building. If the sensors are relocated, then the application automatically reconfigures itself in the light of the new routing topology. WSNs are event-based systems that rely on the collective effort of several micro-sensor nodes, which are continuously observing a physical phenomenon. WSN applications require spatially dense sensor deployment in order to achieve satisfactory coverage. The degree of spatial correlation increases with the decreasing inter-node separation. Energy consumption is reduced dramatically by having only those sensor nodes with unique readings transmit their data. We report on an algorithm based on a spatial correlation technique that assures high QoS (in terms of SNR) of the network as well as proper utilization of energy, by suppressing redundant data transmission

  3. Application of spatial methods to identify areas with lime requirement in eastern Croatia

    NASA Astrophysics Data System (ADS)

    Bogunović, Igor; Kisic, Ivica; Mesic, Milan; Zgorelec, Zeljka; Percin, Aleksandra; Pereira, Paulo

    2016-04-01

    With more than 50% of acid soils in all agricultural land in Croatia, soil acidity is recognized as a big problem. Low soil pH leads to a series of negative phenomena in plant production and therefore as a compulsory measure for reclamation of acid soils is liming, recommended on the base of soil analysis. The need for liming is often erroneously determined only on the basis of the soil pH, because the determination of cation exchange capacity, the hydrolytic acidity and base saturation is a major cost to producers. Therefore, in Croatia, as well as some other countries, the amount of liming material needed to ameliorate acid soils is calculated by considering their hydrolytic acidity. For this research, several interpolation methods were tested to identify the best spatial predictor of hidrolitic acidity. The purpose of this study was to: test several interpolation methods to identify the best spatial predictor of hidrolitic acidity; and to determine the possibility of using multivariate geostatistics in order to reduce the number of needed samples for determination the hydrolytic acidity, all with an aim that the accuracy of the spatial distribution of liming requirement is not significantly reduced. Soil pH (in KCl) and hydrolytic acidity (Y1) is determined in the 1004 samples (from 0-30 cm) randomized collected in agricultural fields near Orahovica in eastern Croatia. This study tested 14 univariate interpolation models (part of ArcGIS software package) in order to provide most accurate spatial map of hydrolytic acidity on a base of: all samples (Y1 100%), and the datasets with 15% (Y1 85%), 30% (Y1 70%) and 50% fewer samples (Y1 50%). Parallel to univariate interpolation methods, the precision of the spatial distribution of the Y1 was tested by the co-kriging method with exchangeable acidity (pH in KCl) as a covariate. The soils at studied area had an average pH (KCl) 4,81, while the average Y1 10,52 cmol+ kg-1. These data suggest that liming is necessary

  4. Compact, transmissive two-dimensional spatial disperser design with application in simultaneous endoscopic imaging and laser microsurgery.

    PubMed

    Metz, Philipp; Adam, Jost; Gerken, Martina; Jalali, Bahram

    2014-01-20

    Minimally invasive surgery procedures benefit from a reduced size of endoscopic devices. A prospective path to implement miniaturized endoscopy is single optical-fiber-based spectrally encoded imaging. While simultaneous spectrally encoded inertial-scan-free imaging and laser microsurgery have been successfully demonstrated in a large table setup, a highly miniaturized optical design would promote the development of multipurpose endoscope heads. This paper presents a highly scalable, entirely transmissive axial design for a spectral 2D spatial disperser. The proposed design employs a grating prism and a virtual imaged phased array (VIPA). Based on semi-analytical device modeling, we performed a systematic parameter analysis to assess the spectral disperser's manufacturability and to obtain an optimum application-specific design. We found that, in particular, a low grating period combined with a high optical input bandwidth and low VIPA tilt showed favorable results in terms of a high spatial resolution, a small device diameter, and a large field of view. Our calculations reveal that a reasonable imaging performance can be achieved with system diameters of below 5 mm, which renders the proposed 2D spatial disperser design highly suitable for use in future endoscope heads that combine mechanical-scan-free imaging and laser microsurgery. PMID:24514122

  5. Joint Variable Spatial Downscaling (JVSD): A New Downscaling Method with Application to the Southeast US

    NASA Astrophysics Data System (ADS)

    Zhang, F.; Georgakakos, A. P.

    2011-12-01

    Joint Variable Spatial Downscaling (JVSD) is a new downscaling method developed to produce high resolution gridded hydrological datasets suitable for regional watershed modeling and assessments. JVSD differs from other statistical downscaling methods in that multiple climatic variables are downscaled simultaneously to produce realistic and consistent climate fields. JVSD includes two major steps: bias correction and spatial downscaling. In the bias correction step, JVSD uses a differencing process to create stationary joint cumulative frequency statistics of the variables being downscaled. Bias correction is then based on quantile-to-quantile mapping of these stationary frequency distributions probability space. The functional relationship between these statistics and those of the historical observation period is subsequently used to remove GCM bias. The original variables are recovered through summation of bias corrected differenced sequences. In the spatial disaggregation step, JVSD uses a historical analogue approach, with historical analogues identified simultaneously for all atmospheric fields and over all areas of the basin under study. Analysis and comparisons with 20th Century Climate in Coupled Models (20C3M) data show that JVSD reproduces the sub-grid climatic features as well as their temporal/spatial variability in the historical periods. Comparisons are also performed for precipitation and temperature with the North American regional climate change assessment program (NARCCAP) and other statistical downscaling methods over the southeastern US. The results show that JVSD performs favorably. JVSD is applied for all A1B and A2 CMIP3 GCM scenarios in the Apalachicola-Chattahoochee-Flint River Basin (southeast US) with the following general findings: (i) Mean monthly temperature exhibits increasing trends over the ACF basin for all seasons and all A1B and A2 scenarios; Most significant are the A2 temperature increases in the 2050 - 2099 time periods; (ii

  6. Spatial and Temporal Variability in Pesticide Exposure Downstream of a Heavily Irrigated Cropping Area: Application of Different Monitoring Techniques.

    PubMed

    O'Brien, Dominique; Lewis, Stephen; Davis, Aaron; Gallen, Christie; Smith, Rachael; Turner, Ryan; Warne, Michael; Turner, Scott; Caswell, Stewart; Mueller, Jochen F; Brodie, Jon

    2016-05-25

    Pesticide exposure threatens many freshwater and estuarine ecosystems around the world. This study examined the temporal and spatial trends of pesticide concentrations in a waterway within an agriculturally developed dry-tropics catchment using a combination of grab and passive sampling methods over a continuous two-year monitoring program. A total of 43 pesticide residues were detected with 7 pesticides exceeding ecologically relevant water quality guidelines/trigger values during the study period and 4 (ametryn, atrazine, diuron, and metolachlor) of these exceeding guidelines for several months. The presence and concentration of the pesticides in the stream coincided with seasonal variability in rainfall, harvest timing/cropping cycle, and management changes. The sampling approach used demonstrates that the application of these complementary sampling techniques (both grab and passive sampling methods) was effective in establishing pesticide usage patterns in upstream locations where application data are unavailable. PMID:26755130

  7. MALDI Imaging Mass Spectrometry (MALDI-IMS)—Application of Spatial Proteomics for Ovarian Cancer Classification and Diagnosis

    PubMed Central

    Gustafsson, Johan O. R.; Oehler, Martin K.; Ruszkiewicz, Andrew; McColl, Shaun R.; Hoffmann, Peter

    2011-01-01

    MALDI imaging mass spectrometry (MALDI-IMS) allows acquisition of mass data for metabolites, lipids, peptides and proteins directly from tissue sections. IMS is typically performed either as a multiple spot profiling experiment to generate tissue specific mass profiles, or a high resolution imaging experiment where relative spatial abundance for potentially hundreds of analytes across virtually any tissue section can be measured. Crucially, imaging can be achieved without prior knowledge of tissue composition and without the use of antibodies. In effect MALDI-IMS allows generation of molecular data which complement and expand upon the information provided by histology including immuno-histochemistry, making its application valuable to both cancer biomarker research and diagnostics. The current state of MALDI-IMS, key biological applications to ovarian cancer research and practical considerations for analysis of peptides and proteins on ovarian tissue are presented in this review. PMID:21340013

  8. Spatial input variables applications for hydrological simulation of south Wyoming watershed: case study of Muddy Creek via MIKE SHE

    NASA Astrophysics Data System (ADS)

    Liu, T.; Miller, S. N.; Chitrakar, S.

    2013-12-01

    With the abundant online data sources, there are great advantages of hydrological simulation for the American watershed management. Not only are the conventional station-based data conveniently accessible, but also the spatial data provide the great possibility for the hydrological approaches. This case study demonstrates the possible applications and access source for the hydrological modeling, which might be used as reference. The modeling input time series or parameters origins from various sources: precipitation is from TRMM (as spatial input of hydrological model) and NOAA (station-based), evapotranspiration came from (NASA MODIS platform via ArcGIS access), temperature is delivered by NOAA database (station-based) and NASA MODIS (spatial input), the snow mask and depth also can be obtained from NOAA, NASA MODIS and NRCS, discharge data might be from USGS hydro-climate data network (HCDN). The parameters of static state are surely complete such as DEM contributed by STRM of NASA, soil related data from SSURGO and landuse related data obtained from USGS. The different institutes might focus on different aspects, temporal span, geo-locations. But supported by the various sources of data, the hydrological modeling can be setup solidly by interpolating the various data. The daily time step simulation is manually calibrated for 1 year period referred by 4 discharge gauging stations, as well as 1 year of validation period. Simulation resolution is uniformed to 200m*200m cells size according the 2600km2 of watershed domain. The case study demonstrates that the station-based and spatial data could cooperate each other and support the accurate hydrological modeling during. Based on the established model, it can be further extended for the assessment of water quality impact and sediment transportation simulation. The final goal the modeling approach is to serve the land management on hydrological response.

  9. Spatially uniform and nonuniform analyses of electroencephalographic dynamics,with application to the topography of the alpha rhythm

    NASA Astrophysics Data System (ADS)

    O'Connor, S. C.; Robinson, P. A.

    2004-07-01

    Corticothalamic dynamics are investigated using a model in which spatial nonuniformities are incorporated via the coupling of spatial eigenmodes. Comparison of spectra generated using the nonuniform analysis with those generated using a uniform one demonstrates that, for most frequencies, local activity is only weakly dependent on activity elsewhere in the cortex; however, dispersion of low-wave-number activity ensures that distant dynamics influence local dynamics at low frequencies (below approximately 2Hz ), and at the alpha frequency (approximately 10Hz ), where propagating signals are inherently weakly damped, and wavelengths are large. When certain model parameters have similar spatial profiles, as is expected from physiology, the low-frequency discrepancies tend to cancel, and the uniform analysis with local parameter values is an adequate approximation to the full nonuniform one across the whole spectrum, at least for large-scale nonuniformities. After comparing the uniform and nonuniform analyses, we consider one possible application of the nonuniform analysis: studying the phenomenon of occipital alpha dominance, whereby the alpha frequency and power are greater at the back of the head (occipitally) than at the front. In order to infer realistic nonuniformities in the model parameters, the uniform version of the model is first fitted to data recorded from 98 normal subjects in a waking, eyes-closed state. This yields a set of parameters at each of five electrode sites along the midline. The inferred parameter nonuniformities are consistent with anatomical and physiological constraints. Introducing these spatial profiles into the full nonuniform model then quantitatively reproduces observed site-dependent variations in the alpha power and frequency. The results confirm that the frequency shift is mainly due to a decrease in the corticothalamic propagation delay, but indicate that the delay nonuniformity cannot account for the observed occipital increase in

  10. Spatial analysis of electricity demand patterns in Greece: Application of a GIS-based methodological framework

    NASA Astrophysics Data System (ADS)

    Tyralis, Hristos; Mamassis, Nikos; Photis, Yorgos N.

    2016-04-01

    We investigate various uses of electricity demand in Greece (agricultural, commercial, domestic, industrial use as well as use for public and municipal authorities and street lightning) and we examine their relation with variables such as population, total area, population density and the Gross Domestic Product. The analysis is performed on data which span from 2008 to 2012 and have annual temporal resolution and spatial resolution down to the level of prefecture. We both visualize the results of the analysis and we perform cluster and outlier analysis using the Anselin local Moran's I statistic as well as hot spot analysis using the Getis-Ord Gi* statistic. The definition of the spatial patterns and relationships of the aforementioned variables in a GIS environment provides meaningful insight and better understanding of the regional development model in Greece and justifies the basis for an energy demand forecasting methodology. Acknowledgement: This research has been partly financed by the European Union (European Social Fund - ESF) and Greek national funds through the Operational Program "Education and Lifelong Learning" of the National Strategic Reference Framework (NSRF) - Research Funding Program: ARISTEIA II: Reinforcement of the interdisciplinary and/ or inter-institutional research and innovation (CRESSENDO project; grant number 5145).

  11. Spatially resolved spectroscopic measurements of a dielectric barrier discharge plasma jet applicable for soft ionization

    NASA Astrophysics Data System (ADS)

    Olenici-Craciunescu, S. B.; Müller, S.; Michels, A.; Horvatic, V.; Vadla, C.; Franzke, J.

    2011-03-01

    An atmospheric pressure microplasma ionization source based on a dielectric barrier discharge with a helium plasma cone outside the electrode region has been developed for liquid chromatography/mass spectrometry and as ionization source for ion mobility spectrometry. It turned out that dielectric barrier discharge ionization could be regarded as a soft ionization technique characterized by only minor fragmentation similar to atmospheric pressure chemical ionization (APCI). Mainly protonated molecules were detected. In order to characterize the soft ionization mechanism spatially resolved optical emission spectrometry (OES) measurements were performed on plasma jets burning either in He or in Ar. Besides to spatial intensity distributions of noble gas spectral lines, in both cases a special attention was paid to lines of N 2+ and N 2. The obtained mapping of the plasma jet shows very different number density distributions of relevant excited species. In the case of helium plasma jet, strong N 2+ lines were observed. In contrast to that, the intensities of N 2 lines in Ar were below the present detection limit. The positions of N 2+ and N 2 distribution maxima in helium indicate the regions where the highest efficiency of the water ionization and the protonation process is expected.

  12. Development and application of a spatial hydrology model of Okefenokee Swamp, Georgia

    USGS Publications Warehouse

    Loftin, C.S.; Kitchens, W.M.; Ansay, N.

    2001-01-01

    The model described herein was used to assess effects of the Suwannee River sill (a low earthen dam constructed to impound the Suwannee River within the Okefenokee National Wildlife Refuge to eliminate wildfires) on the hydrologic environment of Okefenokee Swamp, Georgia. Developed with Arc/Info Macro Language routines in the GRID environment, the model distributes water in the swamp landscape using precipitation, inflow, evapotranspiration, outflow, and standing water. Water movement direction and rate are determined by the neighborhood topographic gradient, determined using survey grade Global Positioning Systems technology. Model data include flow rates from USGS monitored gauges, precipitation volumes and water levels measured within the swamp, and estimated evapotranspiration volumes spatially modified by vegetation type. Model output in semi-monthly time steps includes water depth, water surface elevation above mean sea level, and movement direction and volume. Model simulations indicate the sill impoundment affects 18 percent of the swamp during high water conditions when wildfires are scarce and has minimal spatial effect (increasing hydroperiods in less than 5 percent of the swamp) during low water and drought conditions when fire occurrence is high but precipitation and inflow volumes are limited.

  13. A mobile system for quantifying the spatial variability of the surface energy balance: design and application

    NASA Astrophysics Data System (ADS)

    Wohlfahrt, Georg; Tasser, Erich

    2015-05-01

    We present a mobile device for the quantification of the small-scale (a few square meters) spatial variability in the surface energy balance components and several auxiliary variables of short-statured (<1 m) canopies. The key element of the mobile device is a handheld four-component net radiometer for the quantification of net radiation, albedo and infrared surface temperature, which is complemented with measurements of air temperature, wind speed, soil temperature and soil water content. Data are acquired by a battery-powered data logger, which is mounted on a backpack together with the auxiliary sensors. The proposed device was developed to bridge between the spatial scales of satellite/airborne remote sensing and fixed, stationary tower-based measurements with an emphasis on micrometeorological, catchment hydrological and landscape-ecological research questions. The potential of the new device is demonstrated through four selected case studies, which cover the issues of net radiation heterogeneity within the footprint of eddy covariance flux measurements due to (1) land use and (2) slope and aspect of the underlying surface, (3) controls on landscape-scale variability in soil temperature and albedo and (4) the estimation of evapotranspiration based exclusively on measurements with the mobile device.

  14. A mobile system for quantifying the spatial variability of the surface energy balance: design and application

    NASA Astrophysics Data System (ADS)

    Tasser, Erich; Wohlfahrt, Georg

    2014-05-01

    We present a mobile device for the quantification of the small-scale spatial variability in the surface energy balance components and several auxiliary variables of short-statured canopies. The key element of the mobile device is a hand-held four-component net radiometer for the quantification of net radiation, albedo and infrared surface temperature, which is complemented with measurements of air temperature, wind speed, soil temperature and soil water content. Data are acquired by a battery-powered data logger, which is mounted on a backpack together with the auxiliary sensors. The proposed device was developed to bridge between the spatial scales of satellite/airborne remote sensing and fixed, stationary tower-based measurements with an emphasis on micrometeorological, catchment hydrological and landscape-ecological research questions. The potential of the new device is demonstrated through four selected case studies, which cover the issues of net radiation heterogeneity within the footprint of eddy covariance flux measurements due to (i) land use and (ii) slope and aspect of the underlying surface, (iii) controls on landscape-scale variability in soil temperature and albedo, and (iv) the estimation of evapotranspiration based exclusively on measurements with the mobile device.

  15. Bandwidth of the contrast sensitivity function as an index of spatial vision with application to refraction.

    PubMed

    Jiang, B C; Scialfa, C T; Tyrrell, R A; Garvey, P M; Leibowitz, H W

    1990-04-01

    The contrast sensitivity function (CSF), although containing more information than traditional measures of acuity, has found difficulty gaining clinical acceptance. The hesitancy of clinicians to adopt the CSF stems, in part, from the fact that it is not as readily interpreted as is acuity. In order to facilitate such interpretation, five indices of spatial vision which are derivable from the CSF were examined in a sample of 287 persons aged 5 to 85 years. All indices were found to be both age-sensitive and strongly related to each other, but bandwidth of the CSF was chosen as a practical index for clinical settings. In a second study, acuity and CSF bandwidth were measured under 0 to +/- 1 D optical blur. It was found that the correction providing best acuity also maximized CSF bandwidth, and that bandwidth was more sensitive to optical blur than was acuity. Results support the assertion that CSF bandwidth is a readily interpreted index of spatial vision that can be measured efficiently within the context of clinical refraction. PMID:2342788

  16. SEHR-ECHO v1.0: a Spatially Explicit Hydrologic Response model for ecohydrologic applications

    NASA Astrophysics Data System (ADS)

    Schaefli, B.; Nicótina, L.; Imfeld, C.; Da Ronco, P.; Bertuzzo, E.; Rinaldo, A.

    2014-11-01

    This paper presents the Spatially Explicit Hydrologic Response (SEHR) model developed at the Laboratory of Ecohydrology of the Ecole Polytechnique Fédérale de Lausanne for the simulation of hydrological processes at the catchment scale. The key concept of the model is the formulation of water transport by geomorphologic travel time distributions through gravity-driven transitions among geomorphic states: the mobilization of water (and possibly dissolved solutes) is simulated at the subcatchment scale and the resulting responses are convolved with the travel paths distribution within the river network to obtain the hydrologic response at the catchment outlet. The model thus breaks down the complexity of the hydrologic response into an explicit geomorphological combination of dominant spatial patterns of precipitation input and of hydrologic process controls. Nonstationarity and nonlinearity effects are tackled through soil moisture dynamics in the active soil layer. We present here the basic model set-up for precipitation-runoff simulation and a detailed discussion of its parameter estimation and of its performance for the Dischma River (Switzerland), a snow-dominated catchment with a small glacier cover.

  17. Airborne gamma-ray spectrometer survey data application in spatial methods

    SciTech Connect

    Bresnahan, P.J.

    1996-12-31

    The purpose of this research was to develop a methodology that used geographic information system (GIS) tools to convert airborne gamma-ray spectrometer (AGRS) survey data to various spatial data formats for use in radiological hazard mapping and risk assessments. The importance of this conversion methodology results from the versatility and consistency of spatial interpolations using commercially supported software as opposed to previous methods. Maps of interpolated AGRS data provide potential radiological hazard boundaries, delineated by user-defined limits, to guide intense field surveys. Resulting GIS products may be combined with other risk assessment inputs to model and monitor hazardous environments. The AGRS data used in this research was collected during the 1991 sitewide survey at Savannah River site (SRS) as part of the comprehensive integrated remote sensing (CIRS) program conducted by EG&G for the SRS. The AGRS survey component of the program is designed to provide a database for studying the transport of manufactured radionuclides through the environment at the SRS and surrounding areas. The AGRS data have historically been presented only in hardcopy format as acetate overlays on aerial photography. Recently, digital files representing contoured isotopic response have been delivered to the SRS as GIS themes. Since AGRS data are often a collection of dense sample points, interpolation of the data has previously been conducted by connecting points in series along flight paths. To improve on the original algorithm used to contour AGRS data, a triangulated irregular network (TIN) was used as the data model for contour and raster generation.

  18. A mobile system for quantifying the spatial variability of the surface energy balance: design and application.

    PubMed

    Wohlfahrt, Georg; Tasser, Erich

    2015-05-01

    We present a mobile device for the quantification of the small-scale (a few square meters) spatial variability in the surface energy balance components and several auxiliary variables of short-statured (<1 m) canopies. The key element of the mobile device is a handheld four-component net radiometer for the quantification of net radiation, albedo and infrared surface temperature, which is complemented with measurements of air temperature, wind speed, soil temperature and soil water content. Data are acquired by a battery-powered data logger, which is mounted on a backpack together with the auxiliary sensors. The proposed device was developed to bridge between the spatial scales of satellite/airborne remote sensing and fixed, stationary tower-based measurements with an emphasis on micrometeorological, catchment hydrological and landscape-ecological research questions. The potential of the new device is demonstrated through four selected case studies, which cover the issues of net radiation heterogeneity within the footprint of eddy covariance flux measurements due to (1) land use and (2) slope and aspect of the underlying surface, (3) controls on landscape-scale variability in soil temperature and albedo and (4) the estimation of evapotranspiration based exclusively on measurements with the mobile device. PMID:25063050

  19. Application of land use regression modelling to assess the spatial distribution of road traffic noise in three European cities.

    PubMed

    Aguilera, Inmaculada; Foraster, Maria; Basagaña, Xavier; Corradi, Elisabetta; Deltell, Alexandre; Morelli, Xavier; Phuleria, Harish C; Ragettli, Martina S; Rivera, Marcela; Thomasson, Alexandre; Slama, Rémy; Künzli, Nino

    2015-01-01

    Noise prediction models and noise maps are used to estimate the exposure to road traffic noise, but their availability and the quality of the noise estimates is sometimes limited. This paper explores the application of land use regression (LUR) modelling to assess the long-term intraurban spatial variability of road traffic noise in three European cities. Short-term measurements of road traffic noise taken in Basel, Switzerland (n=60), Girona, Spain (n=40), and Grenoble, France (n=41), were used to develop two LUR models: (a) a "GIS-only" model, which considered only predictor variables derived with Geographic Information Systems; and (b) a "Best" model, which in addition considered the variables collected while visiting the measurement sites. Both noise measurements and noise estimates from LUR models were compared with noise estimates from standard noise models developed for each city by the local authorities. Model performance (adjusted R(2)) was 0.66-0.87 for "GIS-only" models, and 0.70-0.89 for "Best" models. Short-term noise measurements showed a high correlation (r=0.62-0.78) with noise estimates from the standard noise models. LUR noise estimates did not show any systematic differences in the spatial patterns when compared with those from standard noise models. LUR modelling with accurate GIS source data can be a promising tool for noise exposure assessment with applications in epidemiological studies. PMID:25227731

  20. Spatial three-dimensional landslide susceptibility mapping tool and its applications

    NASA Astrophysics Data System (ADS)

    Xie, Mowen; Tetsuro, Esaki; Qiu, Cheng; Jia, Lin

    There are three methods of zoning landslide susceptibility: qualitative, statistical methodologies, and geotechnical model. Qualitative approaches are based on the judgment of those conducting the susceptibility or hazard assessment; the statistical approach uses a predictive function or index derived from a combination of weighted factors; and the deterministic, or physically based, models are based on the physical laws of conservation of mass, energy, and momentum. Two-dimensional deterministic models are widely used in the design of civil engineering, and the infinite slope model (one-dimensional) is always employed in the deterministic-model-based landslide hazard mapping. This article presents a new GIS (Geographic Information Systems)-based landslide susceptibility mapping system which can be used to identify the three-dimensional (3-D) landslide bodies from complex topography. All slope-related spatial information (vector or raster dataset) was integrated in the system, by dividing the study area into slope units and assuming the initial slip to be the lower part of an ellipsoid. The 3-D critical slip surface in the 3-D slope stability analysis was located by minimizing the 3-D safety factor using the Monte Carlo random simulation. The failure probability of the landslide was calculated using an approximate method in which effective cohesion, effective friction angle, and 3-D safety factor were assumed to be in normal distribution. A computational program called 3-DSlopeGIS, in which a GIS Developer kit (ArcObjects of ESRI) had been used to fulfill the GIS spatial analysis function and effective data management, has been developed to implement all the calculations of the 3-D slope problem. By using the spatial analysis functions, the data management, and the visualization of GIS for processing the complicated slope-related data, the 3-D slope stability problem is easier to be studied through a friendly visual graphical user interface. The system has been

  1. Passive microwave derived snowmelt timing: significance, spatial and temporal variability, and potential applications

    NASA Astrophysics Data System (ADS)

    Semmens, Kathryn Alese

    Snow accumulation and melt are dynamic features of the cryosphere indicative of a changing climate. Spring melt and refreeze timing are of particular importance due to the influence on subsequent hydrological and ecological processes, including peak runoff and green-up. To investigate the spatial and temporal variability of melt timing across a sub-arctic region (the Yukon River Basin (YRB), Alaska/Canada) dominated by snow and lacking substantial ground instrumentation, passive microwave remote sensing was utilized to provide daily brightness temperatures (Tb) regardless of clouds and darkness. Algorithms to derive the timing of melt onset and the end of melt-refreeze, a critical transition period where the snowpack melts during the day and refreezes at night, were based on thresholds for Tb and diurnal amplitude variations (day and night difference). Tb data from the Special Sensor Microwave Imager (1988 to 2011) was used for analyzing YRB terrestrial snowmelt timing and for characterizing melt regime patterns for icefields in Alaska and Patagonia. Tb data from the Advanced Microwave Scanning Radiometer for EOS (2003 to 2010) was used for determining the occurrence of early melt events (before melt onset) associated with fog or rain on snow, for investigating the correlation between melt timing and forest fires, and for driving a flux-based snowmelt runoff model. From the SSM/I analysis: the melt-refreeze period lengthened for the majority of the YRB with later end of melt-refreeze and earlier melt onset; and positive Tb anomalies were found in recent years from glacier melt dynamics. From the AMSR-E analysis: early melt events throughout the YRB were most often associated with warm air intrusions and reflect a consistent spatial distribution; years and areas of earlier melt onset and refreeze had more forest fire occurrences suggesting melt timing's effects extend to later seasons; and satellite derived melt timing served as an effective input for model

  2. Application of Geo-Spatial Techniques for Precise Demarcation of Village/Panchayat Boundaries

    NASA Astrophysics Data System (ADS)

    Rao, S. S.; Banu, V.; Tiwari, A.; Bahuguna, S.; Uniyal, S.; Chavan, S. B.; Murthy, M. V. R.; Arya, V. S.; Nagaraja, R.; Sharma, J. R.

    2014-11-01

    In order to achieve the overall progress of the country with active and effective participation of all sections of society, the 12th Five Year Plan (FYP) would bring Panchayats centre-stage and achieve the inclusive growth agenda through inclusive governance. The concept of 'democratic decentralization' in the form of a three-tier administration was introduced in the name of "Panchayat Raj". Horizontally, it is a network of village Panchayats. Vertically, it is an organic growth of Panchayats rising up to national level. The Ministry of Panchayati Raj has three broad agenda: Empowerment, Enablement and Accountability. Space based Information Support for Decentralized Planning (SIS-DP) is one of the initiatives taken by Govt. of India with ISRO/DOS for generation and dissemination of spatial information for planning at the grass root level. The boundary layer for villages across different states/district/block is available with line departments. Most of these data exist at a much generalized scale. These boundaries do not overlay exactly with that of ground realities and may not be suitable for accurate analysis in terms of area, shape, position, etc. To deal with this problem, a strategy is adopted, which makes use of High Resolution Satellite Imagery (HRSI) from Indian Remote sensing satellites and cadastral maps at 1:4000 scale integrated with GIS techniques to enhance the accuracy of geo-spatial depiction of Village/Panchayat boundaries. Cadastral maps are used to depict the boundaries of land parcels and other features at the village level. These maps are registered to ortho products of HRSI using Ground Control Points. The cadastral maps are precisely overlaid on ortho-rectified HRSI and each parcel vertex is tagged with the real-world geographical coordinates. Village boundaries are extracted from the geo-referenced village cadastral maps. These boundaries are fine-tuned by considering under lap and overlap of neighboring villages and a mosaic is generated at

  3. Documentation of a spatial data-base management system for monitoring pesticide application in Washington

    USGS Publications Warehouse

    Schurr, K.M.; Cox, S.E.

    1994-01-01

    The Pesticide-Application Data-Base Management System was created as a demonstration project and was tested with data submitted to the Washington State Department of Agriculture by pesticide applicators from a small geographic area. These data were entered into the Department's relational data-base system and uploaded into the system's ARC/INFO files. Locations for pesticide applica- tions are assigned within the Public Land Survey System grids, and ARC/INFO programs in the Pesticide-Application Data-Base Management System can subdivide each survey section into sixteen idealized quarter-quarter sections for display map grids. The system provides data retrieval and geographic information system plotting capabilities from a menu of seven basic retrieval options. Additionally, ARC/INFO coverages can be created from the retrieved data when required for particular applications. The Pesticide-Application Data-Base Management System, or the general principles used in the system, could be adapted to other applica- tions or to other states.

  4. Optimal steering for kinematic vehicles with applications to spatially distributed agents

    NASA Astrophysics Data System (ADS)

    Brown, Scott; Praeger, Cheryl E.; Giudici, Michael

    While there is no universal method to address control problems involving networks of autonomous vehicles, there exist a few promising schemes that apply to different specific classes of problems, which have attracted the attention of many researchers from different fields. In particular, one way to extend techniques that address problems involving a single autonomous vehicle to those involving teams of autonomous vehicles is to use the concept of Voronoi diagram. The Voronoi diagram provides a spatial partition of the environment the team of vehicles operate in, where each element of this partition is associated with a unique vehicle from the team. The partition induces a graph abstraction of the operating space that is in an one-to-one correspondence with the network abstraction of the team of autonomous vehicles; a fact that can provide both conceptual and analytical advantages during mission planning and execution. In this dissertation, we propose the use of a new class of Voronoi-like partitioning schemes with respect to state-dependent proximity (pseudo-) metrics rather than the Euclidean distance or other generalized distance functions, which are typically used in the literature. An important nuance here is that, in contrast to the Euclidean distance, state-dependent metrics can succinctly capture system theoretic features of each vehicle from the team (e.g., vehicle kinematics), as well as the environment-vehicle interactions, which are induced, for example, by local winds/currents. We subsequently illustrate how the proposed concept of state-dependent Voronoi-like partition can induce local control schemes for problems involving networks of spatially distributed autonomous vehicles by examining a sequential pursuit problem of a maneuvering target by a group of pursuers distributed in the plane. The construction of generalized Voronoi diagrams with respect to state-dependent metrics poses some significant challenges. First, the generalized distance metric

  5. Spatial, High-Accuracy, Positioning-Encoding Sensor (SHAPES) for large space system control applications

    NASA Technical Reports Server (NTRS)

    Mclauchlan, J. M.

    1982-01-01

    The Spatial, High-Accuracy, Position-Encoding Sensor is a controls sensor suitable for the determination of the static shape and vibrational motion of large space structures and similar systems and for the determination of position and velocity in rendezvous and docking. It uses a combination of electro-optical techniques to measure the three-dimensional coordinates distributed over the structure at reading rates high compared to the rates at which the coordinates are changing. The technical approach is that of measuring the distance to and the direction of points on the structure from a single sensor head. Many points can be measured simultaneously from a single head without significantly increasing the complexity of the system.

  6. Transmissive spatial light modulators with high figure-of-merit liquid crystals for foveated imaging applications

    NASA Astrophysics Data System (ADS)

    Harriman, Jamie; Gauza, Sebastian; Wu, Shin-Tson; Wick, David; Bagwell, Brett; Martinez, Ty; Payne, Don; Serati, Steven

    2006-02-01

    Unique liquid crystal (LC) spatial light modulators (SLM) are being developed for foveated imaging systems that provide wide field-of-view (FOV) coverage (+/-60° in azimuth and elevation) without requiring gimbals or other mechanical scanners. Recently, a transmissive-SLM- based system operating in the visible (532 nm) has been demonstrated. The LC SLM development is addressing implementation issues through the development of high figure-of-merit (FoM) LC materials and transmissive high-resolution SLMs. Transmissive SLM operation allows the foveated imaging configuration to be very compact using a very simple lens system. The reduction in the size, weight and cost of the imaging optics and in data acquisition/processing hardware makes the foveated approach attractive for small platforms such as unmanned airborne vehicles (UAVs) or missile seekers.

  7. Image segmentation using joint spatial-intensity-shape features: application to CT lung nodule segmentation

    NASA Astrophysics Data System (ADS)

    Ye, Xujiong; Siddique, Musib; Douiri, Abdel; Beddoe, Gareth; Slabaugh, Greg

    2009-02-01

    Automatic segmentation of medical images is a challenging problem due to the complexity and variability of human anatomy, poor contrast of the object being segmented, and noise resulting from the image acquisition process. This paper presents a novel feature-guided method for the segmentation of 3D medical lesions. The proposed algorithm combines 1) a volumetric shape feature (shape index) based on high-order partial derivatives; 2) mean shift clustering in a joint spatial-intensity-shape (JSIS) feature space; and 3) a modified expectation-maximization (MEM) algorithm on the mean shift mode map to merge the neighboring regions (modes). In such a scenario, the volumetric shape feature is integrated into the process of the segmentation algorithm. The joint spatial-intensity-shape features provide rich information for the segmentation of the anatomic structures or lesions (tumors). The proposed method has been evaluated on a clinical dataset of thoracic CT scans that contains 68 nodules. A volume overlap ratio between each segmented nodule and the ground truth annotation is calculated. Using the proposed method, the mean overlap ratio over all the nodules is 0.80. On visual inspection and using a quantitative evaluation, the experimental results demonstrate the potential of the proposed method. It can properly segment a variety of nodules including juxta-vascular and juxta-pleural nodules, which are challenging for conventional methods due to the high similarity of intensities between the nodules and their adjacent tissues. This approach could also be applied to lesion segmentation in other anatomies, such as polyps in the colon.

  8. Thermal Characterization of Defects in Aircraft Structures Via Spatially Controlled Heat Application

    NASA Technical Reports Server (NTRS)

    Cramer, K. Elliott; Winfree, William P.

    1997-01-01

    Recent advances in thermal imaging technology have spawned a number of new thermal NDE techniques that provide quantitative information about flaws in aircraft structures. Thermography has a number of advantages as an inspection technique. It is a totally noncontacting, nondestructive, imaging technology capable of inspecting a large area in a matter of a few seconds. The development of fast, inexpensive image processors have aided in the attractiveness of thermography as an NDE technique. These image processors have increased the signal to noise ratio of thermography and facilitated significant advances in post-processing. The resulting digital images enable archival records for comparison with later inspections thus providing a means of monitoring the evolution of damage in a particular structure. The National Aeronautics and Space Administration's Langley Research Center has developed a thermal NDE technique designed to image a number of potential flaws in aircraft structures. The technique involves injecting a small, spatially controlled heat flux into the outer surface of an aircraft. Images of fatigue cracking, bond integrity and material loss due to corrosion are generated from measurements of the induced surface temperature variations. This paper will present a discussion of the development of the thermal imaging system as well as the techniques used to analyze the resulting thermal images. Spatial tailoring of the heat coupled with the analysis techniques represent a significant improvement in the delectability of flaws over conventional thermal imaging. Results of laboratory experiments on fabricated crack, disbond and material loss samples will be presented to demonstrate the capabilities of the technique. An integral part of the development of this technology is the use of analytic and computational modeling. The experimental results will be compared with these models to demonstrate the utility of such an approach.

  9. Spatial deconvolution of spectropolarimetric data: an application to quiet Sun magnetic elements

    NASA Astrophysics Data System (ADS)

    Quintero Noda, C.; Asensio Ramos, A.; Orozco Suárez, D.; Ruiz Cobo, B.

    2015-07-01

    Context. One of the difficulties in extracting reliable information about the thermodynamical and magnetic properties of solar plasmas from spectropolarimetric observations is the presence of light dispersed inside the instruments, known as stray light. Aims: We aim to analyze quiet Sun observations after the spatial deconvolution of the data. We examine the validity of the deconvolution process with noisy data as we analyze the physical properties of quiet Sun magnetic elements. Methods: We used a regularization method that decouples the Stokes inversion from the deconvolution process, so that large maps can be quickly inverted without much additional computational burden. We applied the method on Hinode quiet Sun spectropolarimetric data. We examined the spatial and polarimetric properties of the deconvolved profiles, comparing them with the original data. After that, we inverted the Stokes profiles using the Stokes Inversion based on Response functions (SIR) code, which allow us to obtain the optical depth dependence of the atmospheric physical parameters. Results: The deconvolution process increases the contrast of continuum images and makes the magnetic structures sharper. The deconvolved Stokes I profiles reveal the presence of the Zeeman splitting while the Stokes V profiles significantly change their amplitude. The area and amplitude asymmetries of these profiles increase in absolute value after the deconvolution process. We inverted the original Stokes profiles from a magnetic element and found that the magnetic field intensity reproduces the overall behavior of theoretical magnetic flux tubes, that is, the magnetic field lines are vertical in the center of the structure and start to fan when we move far away from the center of the magnetic element. The magnetic field vector inferred from the deconvolved Stokes profiles also mimic a magnetic flux tube but in this case we found stronger field strengths and the gradients along the line-of-sight are larger

  10. Michaelis-Menten Kinetics under Spatially Constrained Conditions: Application to Mibefradil Pharmacokinetics

    PubMed Central

    Kosmidis, Kosmas; Karalis, Vangelis; Argyrakis, Panos; Macheras, Panos

    2004-01-01

    Two different approaches were used to study the kinetics of the enzymatic reaction under heterogeneous conditions to interpret the unusual nonlinear pharmacokinetics of mibefradil. Firstly, a detailed model based on the kinetic differential equations is proposed to study the enzymatic reaction under spatial constraints and in vivo conditions. Secondly, Monte Carlo simulations of the enzyme reaction in a two-dimensional square lattice, placing special emphasis on the input and output of the substrate were applied to mimic in vivo conditions. Both the mathematical model and the Monte Carlo simulations for the enzymatic reaction reproduced the classical Michaelis-Menten (MM) kinetics in homogeneous media and unusual kinetics in fractal media. Based on these findings, a time-dependent version of the classic MM equation was developed for the rate of change of the substrate concentration in disordered media and was successfully used to describe the experimental plasma concentration-time data of mibefradil and derive estimates for the model parameters. The unusual nonlinear pharmacokinetics of mibefradil originates from the heterogeneous conditions in the reaction space of the enzymatic reaction. The modified MM equation can describe the pharmacokinetics of mibefradil as it is able to capture the heterogeneity of the enzymatic reaction in disordered media. PMID:15345531

  11. Spatial Temporal Image Correlation Spectroscopy (STICS) for Flow Analysis with Application for Blood Flow Mapping (abstract)

    NASA Astrophysics Data System (ADS)

    Rossow, Molly; Mantulin, William M.; Gratton, Enrico

    2009-04-01

    It is important for surgeons to be able to measure blood flow in exposed arterioles during surgery. We report our progress in the development of an optical technique that will measure blood flow in surgically exposed blood vessels and enable previously difficult measurements. By monitoring optical fluctuations, the optical technique, based on Spatial Temporal Image Correlation (STICS), will directly measure the velocity of micron-scale particles-such as red blood cells. It will complement existing technology and provide qualitative measurements that were not previously possible. It relies on the concept that blood, when viewed on a small enough scale, is an inhomogeneous substance. Individual blood cells passing between a near-infrared light source and a detector will cause fluctuations in the transmitted optical signal. The speed, direction, and flow pattern of blood cells can be determined from these optical fluctuations. We present a series of computer simulations and experiments on phantom and animal systems to test this technique's ability to map complex flow patterns.

  12. Patch-Based Segmentation with Spatial Consistency: Application to MS Lesions in Brain MRI

    PubMed Central

    Mechrez, Roey; Goldberger, Jacob; Greenspan, Hayit

    2016-01-01

    This paper presents an automatic lesion segmentation method based on similarities between multichannel patches. A patch database is built using training images for which the label maps are known. For each patch in the testing image, k similar patches are retrieved from the database. The matching labels for these k patches are then combined to produce an initial segmentation map for the test case. Finally an iterative patch-based label refinement process based on the initial segmentation map is performed to ensure the spatial consistency of the detected lesions. The method was evaluated in experiments on multiple sclerosis (MS) lesion segmentation in magnetic resonance images (MRI) of the brain. An evaluation was done for each image in the MICCAI 2008 MS lesion segmentation challenge. Results are shown to compete with the state of the art in the challenge. We conclude that the proposed algorithm for segmentation of lesions provides a promising new approach for local segmentation and global detection in medical images. PMID:26904103

  13. Spatial Variability and Application of Ratios between BTEX in Two Canadian Cities

    PubMed Central

    Miller, Lindsay; Xu, Xiaohong; Wheeler, Amanda; Atari, Dominic Odwa; Grgicak-Mannion, Alice; Luginaah, Isaac

    2011-01-01

    Spatial monitoring campaigns of volatile organic compounds were carried out in two similarly sized urban industrial cities, Windsor and Sarnia, ON, Canada. For Windsor, data were obtained for all four seasons at approximately 50 sites in each season (winter, spring, summer, and fall) over a three-year period (2004, 2005, and 2006) for a total of 12 sampling sessions. Sampling in Sarnia took place at 37 monitoring sites in fall 2005. In both cities, passive sampling was done using 3M 3500 organic vapor samplers. This paper characterizes benzene, toluene, ethylbenzene, o, and (m + p)-xylene (BTEX) concentrations and relationships among BTEX species in the two cities during the fall sampling periods. BTEX concentration levels and rank order among the species were similar between the two cities. In Sarnia, the relationships between the BTEX species varied depending on location. Correlation analysis between land use and concentration ratios showed a strong influence from local industries. Use one of the ratios between the BTEX species to diagnose photochemical age may be biased due to point source emissions, for example, 53 tonnes of benzene and 86 tonnes of toluene in Sarnia. However, considering multiple ratios leads to better conclusions regarding photochemical aging. Ratios obtained in the sampling campaigns showed significant deviation from those obtained at central monitoring stations, with less difference in the (m + p)/E ratio but better overall agreement in Windsor than in Sarnia. PMID:22235184

  14. Application of speed-enhanced spatial domain correlation filters for real-time security monitoring

    NASA Astrophysics Data System (ADS)

    Gardezi, Akber; Bangalore, Nagachetan; Al-Kandri, Ahmed; Birch, Philip; Young, Rupert; Chatwin, Chris

    2011-11-01

    A speed enhanced space variant correlation filer which has been designed to be invariant to change in orientation and scale of the target object but also to be spatially variant, i.e. the filter function becoming dependant on local clutter conditions within the image. The speed enhancement of the filter is due to the use of optimization techniques employing low-pass filtering to restrict kernel movement to be within regions of interest. The detection and subsequent identification capability of the two-stage process has been evaluated in highly cluttered backgrounds using both visible and thermal imagery acquired from civil and defense domains along with associated training data sets for target detection and classification. In this paper a series of tests have been conducted in multiple scenarios relating to situations that pose a security threat. Performance matrices comprised of peak-to-correlation energy (PCE) and peak-to-side lobe ratio (PSR) measurements of the correlation output have been calculated to allow the definition of a recognition criterion. The hardware implementation of the system has been discussed in terms of Field Programmable Gate Array (FPGA) chipsets with implementation bottle necks and their solution being considered.

  15. Application of a computable model of human spatial vision to phase discrimination

    NASA Technical Reports Server (NTRS)

    Nielsen, K. R. K.; Watson, A. B.; Ahumada, A. J., Jr.

    1985-01-01

    A computable model of human spatial vision is used to make predictions for phase-discrimination experiments. This model is being developed to deal with a broad range of problems in vision and was not specifically formulated to deal with phase discrimination. In the model, cross-correlation of the stimuli with an array of sensors produces feature vectors that are operated on by a position-uncertain ideal observer to simulate detection and discrimination experiments. In this report, the stimuli are compound sinusoidal gratings composed of a fundamental and a higher-frequency component added in various phases. Model predictions are compared with three key results from the literature: (1) the effect of the contrast of the fundamental on phase discrimination, (2) threshold phase difference as a function of the fundamental frequency, and (3) the contrast required for phase discrimination as a function of the frequency ratio of the two grating components. In the first two cases, the predictions capture the main features of the data, although quantitative discrepancies remain. In the third case, the model fails, and this failure suggests additional restrictions on the combination of information across sensors.

  16. Spatial organization of cilia tufts governs airways mucus transport: Application to severe asthma

    NASA Astrophysics Data System (ADS)

    Khelloufi, Mustapha Kamel; Gras, Delphine; Chanez, Pascal; Viallat, Annie

    2014-11-01

    We study the coupling between both density and spatial repartition of beating cilia tufts, and the coordinated transport of mucus in an in-vitro epithelial model. We use a fully differentiated model epithelium in air liquid interface (ALI) obtained from endo-bronchial biopsies from healthy subjects and patients with asthma. The asthma phenotype is known to persist in the model. Mucus transport is characterized by the trajectories and velocities of microscopic beads incorporated in the mucus layer. When the beating cilia tufts density is higher than dc = 11/100 × 100 μm2 a spherical spiral coordinated mucus transport is observed over the whole ALI chamber (radius = 6 mm). Below dc, local mucus coordinated transport is observed on small circular domains on the epithelium surface. We reveal that the radii of these domains scale with the beating cilia tufts density with a power 3.7. Surprisingly, this power law is independent on cilia beat frequency, concentration and rheological properties of mucus for healthy subject and patient with asthma. The rotating or linear mucus transport is related to dispersion of the cilia tufts on the epithelium surface. We show that impaired mucus transport observed in severe asthma model epithelia is due to a drastic lack and dysfunction of cilia tufts. The author acknowledges the support of the French Agence Nationale de la Recherche (ANR) under reference ANR-13-BSV5-0015-01.

  17. Spatial filtering self-velocimeter for vehicle application using a CMOS linear image sensor

    NASA Astrophysics Data System (ADS)

    He, Xin; Zhou, Jian; Nie, Xiaoming; Long, Xingwu

    2015-03-01

    The idea of using a spatial filtering velocimeter (SFV) to measure the velocity of a vehicle for an inertial navigation system is put forward. The presented SFV is based on a CMOS linear image sensor with a high-speed data rate, large pixel size, and built-in timing generator. These advantages make the image sensor suitable to measure vehicle velocity. The power spectrum of the output signal is obtained by fast Fourier transform and is corrected by a frequency spectrum correction algorithm. This velocimeter was used to measure the velocity of a conveyor belt driven by a rotary table and the measurement uncertainty is ˜0.54%. Furthermore, it was also installed on a vehicle together with a laser Doppler velocimeter (LDV) to measure self-velocity. The measurement result of the designed SFV is compared with that of the LDV. It is shown that the measurement result of the SFV is coincident with that of the LDV. Therefore, the designed SFV is suitable for a vehicle self-contained inertial navigation system.

  18. Spatial Temporal Image Correlation Spectroscopy (STICS) for Flow Analysis with Application for Blood Flow Mapping

    SciTech Connect

    Rossow, Molly; Gratton, Enrico; Mantulin, William M.

    2009-04-19

    It is important for surgeons to be able to measure blood flow in exposed arterioles during surgery. We report our progress in the development of an optical technique that will measure blood flow in surgically exposed blood vessels and enable previously difficult measurements. By monitoring optical fluctuations, the optical technique, based on Spatial Temporal Image Correlation (STICS), will directly measure the velocity of micron-scale particles--such as red blood cells. It will complement existing technology and provide qualitative measurements that were not previously possible. It relies on the concept that blood, when viewed on a small enough scale, is an inhomogeneous substance. Individual blood cells passing between a near-infrared light source and a detector will cause fluctuations in the transmitted optical signal. The speed, direction, and flow pattern of blood cells can be determined from these optical fluctuations. We present a series of computer simulations and experiments on phantom and animal systems to test this technique's ability to map complex flow patterns.

  19. Application of high spatial resolution airborne hyperspectral remote sensing data in thematic information extraction

    NASA Astrophysics Data System (ADS)

    Xu, Hong-gen; Ma, Hong-chao; Li, De-ren; Song, Yan

    2006-10-01

    The airborne hyperspectral remote sensing data, such as PHI, OMIS, has the virtues of high spatial and spectral resolution. Hence, from the view of target classification we can consider that it can provide the ability of discriminating targets more detailedly than other data. So it's important to extract thematic information and update database using this kind of data. Whereas, the hyperspectral data has abundant bands and high between-band correlation, the traditional classification methods such as maximum likelihood classifier (MLC) and spectral angle mapper (SAM) have performed poorly in thematic information extraction. For this reason, we present a new method for thematic information extraction with hyperspectral remote sensing data. We perform classification by means of combining the self-organizing map (SOM) neural network which is considered as full-pixel technique with linear spectral mixture analysis (LSMA) which is considered as mixed-pixel technique. The SOM neural network is improved from some aspects to classify the pure data and find the mixed data. And then the mixed data are unmixed and classified by LSMA. The result of experiment shows that we can have the better performance in thematic information extraction with PHI by this means.

  20. Laser correlation velocimetry performance in diesel applications: spatial selectivity and velocity sensitivity

    NASA Astrophysics Data System (ADS)

    Hespel, Camille; Blaisot, Jean-Bernard; Gazon, Matthieu; Godard, Gilles

    2012-07-01

    The characterization of diesel jets in the near field of the nozzle exit still presents challenges for experimenters. Detailed velocity measurements are needed to characterize diesel injector performance and also to establish boundary conditions for CFD codes. The present article examines the efficiency of laser correlation velocimetry (LCV) applied to diesel spray characterization. A new optical configuration based on a long-distance microscope was tested, and special care was taken to examine the spatial selectivity of the technique. Results show that the depth of the measurement volume (along the laser beam) of LCV extends beyond the depth of field of the imaging setup. The LCV results were also found to be particularly sensitive to high-speed elements of a spray. Results from high-pressure diesel jets in a back-pressure environment indicate that this technique is particularly suited to the very near field of the nozzle exit, where the flow is the narrowest and where the velocity distribution is not too large. It is also shown that the performance of the LCV technique is controlled by the filtering and windowing parameters used in the processing of the raw signals.

  1. Mapping Genetic Diversity of Cherimoya (Annona cherimola Mill.): Application of Spatial Analysis for Conservation and Use of Plant Genetic Resources

    PubMed Central

    van Zonneveld, Maarten; Scheldeman, Xavier; Escribano, Pilar; Viruel, María A.; Van Damme, Patrick; Garcia, Willman; Tapia, César; Romero, José; Sigueñas, Manuel; Hormaza, José I.

    2012-01-01

    There is a growing call for inventories that evaluate geographic patterns in diversity of plant genetic resources maintained on farm and in species' natural populations in order to enhance their use and conservation. Such evaluations are relevant for useful tropical and subtropical tree species, as many of these species are still undomesticated, or in incipient stages of domestication and local populations can offer yet-unknown traits of high value to further domestication. For many outcrossing species, such as most trees, inbreeding depression can be an issue, and genetic diversity is important to sustain local production. Diversity is also crucial for species to adapt to environmental changes. This paper explores the possibilities of incorporating molecular marker data into Geographic Information Systems (GIS) to allow visualization and better understanding of spatial patterns of genetic diversity as a key input to optimize conservation and use of plant genetic resources, based on a case study of cherimoya (Annona cherimola Mill.), a Neotropical fruit tree species. We present spatial analyses to (1) improve the understanding of spatial distribution of genetic diversity of cherimoya natural stands and cultivated trees in Ecuador, Bolivia and Peru based on microsatellite molecular markers (SSRs); and (2) formulate optimal conservation strategies by revealing priority areas for in situ conservation, and identifying existing diversity gaps in ex situ collections. We found high levels of allelic richness, locally common alleles and expected heterozygosity in cherimoya's putative centre of origin, southern Ecuador and northern Peru, whereas levels of diversity in southern Peru and especially in Bolivia were significantly lower. The application of GIS on a large microsatellite dataset allows a more detailed prioritization of areas for in situ conservation and targeted collection across the Andean distribution range of cherimoya than previous studies could do, i.e. at

  2. Mapping genetic diversity of cherimoya (Annona cherimola Mill.): application of spatial analysis for conservation and use of plant genetic resources.

    PubMed

    Zonneveld, Maarten van; Scheldeman, Xavier; Escribano, Pilar; Viruel, María A; Van Damme, Patrick; Garcia, Willman; Tapia, César; Romero, José; Sigueñas, Manuel; Hormaza, José I

    2012-01-01

    There is a growing call for inventories that evaluate geographic patterns in diversity of plant genetic resources maintained on farm and in species' natural populations in order to enhance their use and conservation. Such evaluations are relevant for useful tropical and subtropical tree species, as many of these species are still undomesticated, or in incipient stages of domestication and local populations can offer yet-unknown traits of high value to further domestication. For many outcrossing species, such as most trees, inbreeding depression can be an issue, and genetic diversity is important to sustain local production. Diversity is also crucial for species to adapt to environmental changes. This paper explores the possibilities of incorporating molecular marker data into Geographic Information Systems (GIS) to allow visualization and better understanding of spatial patterns of genetic diversity as a key input to optimize conservation and use of plant genetic resources, based on a case study of cherimoya (Annona cherimola Mill.), a Neotropical fruit tree species. We present spatial analyses to (1) improve the understanding of spatial distribution of genetic diversity of cherimoya natural stands and cultivated trees in Ecuador, Bolivia and Peru based on microsatellite molecular markers (SSRs); and (2) formulate optimal conservation strategies by revealing priority areas for in situ conservation, and identifying existing diversity gaps in ex situ collections. We found high levels of allelic richness, locally common alleles and expected heterozygosity in cherimoya's putative centre of origin, southern Ecuador and northern Peru, whereas levels of diversity in southern Peru and especially in Bolivia were significantly lower. The application of GIS on a large microsatellite dataset allows a more detailed prioritization of areas for in situ conservation and targeted collection across the Andean distribution range of cherimoya than previous studies could do, i.e. at

  3. Spatial Heat Maps from Fast Information Matching of Fast and Slow Degrees of Freedom: Application to Molecular Dynamics Simulations.

    PubMed

    Kovacs, Julio A; Wriggers, Willy

    2016-08-25

    We introduce a fast information matching (FIM) method for transforming time domain data into spatial images through handshaking between fast and slow degrees of freedom. The analytics takes advantage of the detailed time series available from biomolecular computer simulations, and it yields spatial heat maps that can be visualized on 3D molecular structures or in the form of interaction networks. The speed of our efficient mutual information solver is on the order of a basic Pearson cross-correlation calculation. We demonstrate that the FIM method is superior to linear cross-correlation for the detection of nonlinear dependence in challenging situations where measures for the global dynamics (the "activity") diverge. The analytics is applied to the detection of hinge-bending hot spots and to the prediction of pairwise contacts between residues that are relevant for the global activity exhibited by the molecular dynamics (MD) trajectories. Application examples from various MD laboratories include the millisecond bovine pancreatic trypsin inhibitor (BPTI) trajectory using canonical MD, a Gaussian accelerated MD folding trajectory of chignolin, and the heat-induced unfolding of engrailed homeodomain (EnHD). The FIM implementation will be freely disseminated with our open-source package, TimeScapes. PMID:27169521

  4. Spatial Techniques

    NASA Astrophysics Data System (ADS)

    Jabeur, Nafaa; Sahli, Nabil

    The environment, including the Earth and the immense space, is recognized to be the main source of useful information for human beings. During several decades, the acquisition of data from this environment was constrained by tools and techniques with limited capabilities. However, thanks to continuous technological advances,spatial data are available in huge quantities for different applications. The technological advances have been achieved in terms of hardware and software as well. They are allowing for better accuracy and availability, which in turn improves the quality and quantity of useful knowledge that can be extracted from the environment. They have been applied to geography, resulting in geospatial techniques. Applied to both science and technology, geospatial techniques resulted in areas of expertise, such as land surveying, cartography, navigation, remote sensing, Geographic Infor-mation Systems (GISs), and Global Positioning Systems (GPSs). They had evolved quickly with advances in computing, satellite technology and a growing demand to understand our global environment. In this chapter, we will discuss three important techniques that are widely used in spatial data acquisition and analysis: GPS and remote sensing techniques that are used to collect spatial data and a GIS that is used to store, manipulate, analyze, and visualize spatial data. Later in this book, we will discuss the techniques that are currently available for spatial knowledge discovery.

  5. Development of a web GIS application for emissions inventory spatial allocation based on open source software tools

    NASA Astrophysics Data System (ADS)

    Gkatzoflias, Dimitrios; Mellios, Giorgos; Samaras, Zissis

    2013-03-01

    Combining emission inventory methods and geographic information systems (GIS) remains a key issue for environmental modelling and management purposes. This paper examines the development of a web GIS application as part of an emission inventory system that produces maps and files with spatial allocated emissions in a grid format. The study is not confined in the maps produced but also presents the features and capabilities of a web application that can be used by every user even without any prior knowledge of the GIS field. The development of the application was based on open source software tools such as MapServer for the GIS functions, PostgreSQL and PostGIS for the data management and HTML, PHP and JavaScript as programming languages. In addition, background processes are used in an innovative manner to handle the time consuming and computational costly procedures of the application. Furthermore, a web map service was created to provide maps to other clients such as the Google Maps API v3 that is used as part of the user interface. The output of the application includes maps in vector and raster format, maps with temporal resolution on daily and hourly basis, grid files that can be used by air quality management systems and grid files consistent with the European Monitoring and Evaluation Programme Grid. Although the system was developed and validated for the Republic of Cyprus covering a remarkable wide range of pollutant and emissions sources, it can be easily customized for use in other countries or smaller areas, as long as geospatial and activity data are available.

  6. Teledetection passive et processus decisionnel a reference spatiale: Application a l'aquaculture en milieu marin

    NASA Astrophysics Data System (ADS)

    Habbane, Mohamed

    L'objectif de cette etude est d'elaborer un processus decisionnel a reference spatiale (PDRS) pour la mariculture. Le PDRS est applique aux eaux cotieres de la baie des Chaleurs, dans le golfe du Saint-Laurent (Canada). Une carte preliminaire regionale d'indices du potentiel maricole, d'une limite de resolution spatiale de 1 kmsp2, est produite avec des parametres du niveau 1. Ces parametres englobent la temperature de l'eau de surface, extraite des images AVHRR, la salinite, les courants ainsi que les pigments chlorophylliens, quantifies a l'aide de mesures in situ. Les images AVHRR, prises en 1994, ont ete utiliees comme reference primaire pour selectionner des aires pouvant supporter une activite maricole sur la cote nord de la baie des Chaleurs. La temperature de surface extraite de ces images permet une analyse mesoechelle a la fois qualitative et quantitative des processus cotiers observes pendant la periode d'acquisition des donnees. Les autres donnees, soit la salinite, les courants et les concentrations en pigments chlorophylliens, sont analysees de facon a identifier la variabilite spatio-temporelle des caracteristiques des eaux de surface. L'ensemble des informations permet de produire une carte preliminaire regionale d'indices du potentiel maricole de la partie centrale de la baie des Chaleurs. Selon cet indice (defini entre 0 et 1), le secteur de potentiel aquicole de 0,5 a 0,75 s'etend sur une superficie d'environ 300 kmsp2. La localisation de cette aire potentielle est en accord avec les fortes concentrations en pigments chlrophylliens, presentant des conditions environnementales ideales a une haute productivite biologique. Par la suite la carte preliminaire est modifiee en tenant compte des parametres du niveau 2. Ces parametres sont la geomorphologie littorale, la bathymetrie, les sediments en suspension, les vents, les vagues, le debit d'eau douce, la glace marine, le carbone organique dissous, les aires de peche et les sources de pollution. Ces

  7. The Application of Spatial Signature Analysis to Electrical Test Data: Validation Study

    SciTech Connect

    Gleason, S.S.; Karnowski, T.P.; Lakhani, F.; Tobin, K.W.

    1999-03-15

    This paper presents the results of the Spatial Signature Analysis (SSA) Electrical-test (e-test) validation study that was conducted between February and June, 1998. SSA is an automated procedure developed by researchers at the Oak Ridge National Laboratory to address the issue of intelligent data reduction while providing feedback on current manufacturing processes. SSA was initially developed to automate the analysis of optical defect data. Optical defects can form groups, or clusters, which may have a distinct shape. These patterns can reveal information about the manufacturing process. Optical defect SSA uses image processing algorithms and a classifier system to interpret and identify these patterns, or signatures. SSA has been extended to analyze and interpret electrical test data. The algorithms used for optical defect SSA have been adapted and applied to e-test binmaps. An image of the binmap is created, and features such as geometric and invariant moments are extracted and presented to a pair-wise, fuzzy, k-NN classifier. The classifier itself was prepared by manually training, which consists of storing example signatures of interest in a library, then executing an automated process which treats the examples as prototype signatures. The training process includes a procedure for automatically determining which features are most relevant to each class. The evaluation was performed by installing the SSA software as a batch process at three SEMATECH member company sites. Feedback from member company representatives was incorporated and classifiers were built to automatically assign labels to the binmap signatures. The three sites produced memory devices (DRAM) and microprocessors in a mature process fabrication environment. For all of these products, 5,620 signatures that encompassed approximately 552 wafers were human-classified and analyzed. The performance of the SSA E-test system indicates that the approach was successful in reliably classifying binmap

  8. Spatial Frequency Domain Imaging: Applications in Preclinical Models of Alzheimer's Disease

    NASA Astrophysics Data System (ADS)

    Lin, Alexander Justin

    A clinical challenge in Alzheimer's disease (AD) is diagnosing and treating patients earlier, before symptoms of cognitive dysfunction occur. A good screening test would be sensitive to the AD brain pathology, safe, and cost-effective. Diffuse optical imaging, which measures how non-ionizing light is absorbed and scattered in tissue, may fulfill these three parameters. We imaged the brains of transgenic AD mouse models in vivo with a quantitative, camera-based, diffuse optical imaging technology called spatial frequency domain imaging (SFDI) to characterize near-infrared (650-970nm) optical biomarkers of AD. Compared to age-matched control mice, we found a decrease in light absorption --- due to lower oxygenated and total hemoglobin concentrations in the brain --- correlating to decreased blood vessel volume and density in histology. Light scattering also increased in AD mice, correlating to brain structural changes caused by neuron loss and activation of inflammatory cells. Furthermore, inhaled gas challenges revealed brain vascular function was diminished. To investigate how AD affects the small changes in blood perfusion caused by increased brain activity, we built a new SFDI system from a commercial light-emitting diode microprojector and off-the-shelf optical components and cameras to measure optical properties in the visible range (460-632nm). Our measurements showed a reduced amplitude and duration of blood vessel dilation to increased brain activity in the AD mice. Altogether, this work increased our understanding of AD pathogenesis, explored optical biomarkers of AD, and improved technology access to other research labs. These results and technologies can further be used to facilitate longitudinal drug therapy trials in mice and provide a roadmap to diffuse optical spectroscopy studies in humans.

  9. Frequency assessment of spatially distributed generations of flood scenarios: an application on Italian territory

    NASA Astrophysics Data System (ADS)

    Lomazzi, M.; Roth, G.; Rudari, R.; Taramasso, A. C.; Ghizzoni, T.; Benedetti, R.; Espa, G.; Terpessi, C.

    2009-12-01

    The flooding risk impact on society cannot be understated: it influences land use and territorial planning and development at both physical and regulatory levels. To cope with it, a variety of actions can be put in place, involving multidisciplinary competences. Mitigation measures goes from the improvement of monitoring systems to the development of hydraulic structures, throughout land use restrictions, civil protection and insurance plans. All of those options present social and economic impacts, either positive or negative, whose proper estimate should rely on the assumption of appropriate - present and future - scenarios, i.e. quantitative event descriptions in terms of i) the flood hazard, with its probability of occurrence, extension, intensity, and duration, ii) the exposed values and iii) their vulnerability. At present, initial attention has been devoted to the design of flood scenarios, or ensembles of them, and to the evaluation of their frequency of occurrence. In the present work, a model for spatially distributed flood scenarios generation and frequency assessment is proposed and applied to the Italian territory. The study area has been divided into homogeneous regions according to their hydrologic, orographic and meteoclimatic characteristics. A statistical model for flood scenarios simulation has been implemented throughout a conditional approach based on MCMC simulations by using i) a historical flood events catalogue; ii) a homogeneous regions correlation matrix; and iii) an auxiliary variables data set. In this framework, the role of the information stored in the historical flood events catalogue "Aree Vulnerate Italiane" (AVI, http://avi.gndci.cnr.it/), produced by the Italian National Research Council, is of crucial importance.

  10. Application of spatial and non-spatial data analysis in determination of the factors that impact municipal solid waste generation rates in Turkey

    SciTech Connect

    Keser, Saniye; Duzgun, Sebnem; Aksoy, Aysegul

    2012-03-15

    Highlights: Black-Right-Pointing-Pointer Spatial autocorrelation exists in municipal solid waste generation rates for different provinces in Turkey. Black-Right-Pointing-Pointer Traditional non-spatial regression models may not provide sufficient information for better solid waste management. Black-Right-Pointing-Pointer Unemployment rate is a global variable that significantly impacts the waste generation rates in Turkey. Black-Right-Pointing-Pointer Significances of global parameters may diminish at local scale for some provinces. Black-Right-Pointing-Pointer GWR model can be used to create clusters of cities for solid waste management. - Abstract: In studies focusing on the factors that impact solid waste generation habits and rates, the potential spatial dependency in solid waste generation data is not considered in relating the waste generation rates to its determinants. In this study, spatial dependency is taken into account in determination of the significant socio-economic and climatic factors that may be of importance for the municipal solid waste (MSW) generation rates in different provinces of Turkey. Simultaneous spatial autoregression (SAR) and geographically weighted regression (GWR) models are used for the spatial data analyses. Similar to ordinary least squares regression (OLSR), regression coefficients are global in SAR model. In other words, the effect of a given independent variable on a dependent variable is valid for the whole country. Unlike OLSR or SAR, GWR reveals the local impact of a given factor (or independent variable) on the waste generation rates of different provinces. Results show that provinces within closer neighborhoods have similar MSW generation rates. On the other hand, this spatial autocorrelation is not very high for the exploratory variables considered in the study. OLSR and SAR models have similar regression coefficients. GWR is useful to indicate the local determinants of MSW generation rates. GWR model can be utilized to

  11. Applications of high-resolution spatial discretization scheme and Jacobian-free Newton–Krylov method in two-phase flow problems

    SciTech Connect

    Zou, Ling; Zhao, Haihua; Zhang, Hongbin

    2015-09-01

    The majority of the existing reactor system analysis codes were developed using low-order numerical schemes in both space and time. In many nuclear thermal–hydraulics applications, it is desirable to use higher-order numerical schemes to reduce numerical errors. High-resolution spatial discretization schemes provide high order spatial accuracy in smooth regions and capture sharp spatial discontinuity without nonphysical spatial oscillations. In this work, we adapted an existing high-resolution spatial discretization scheme on staggered grids in two-phase flow applications. Fully implicit time integration schemes were also implemented to reduce numerical errors from operator-splitting types of time integration schemes. The resulting nonlinear system has been successfully solved using the Jacobian-free Newton–Krylov (JFNK) method. The high-resolution spatial discretization and high-order fully implicit time integration numerical schemes were tested and numerically verified for several two-phase test problems, including a two-phase advection problem, a two-phase advection with phase appearance/disappearance problem, and the water faucet problem. Numerical results clearly demonstrated the advantages of using such high-resolution spatial and high-order temporal numerical schemes to significantly reduce numerical diffusion and therefore improve accuracy. Our study also demonstrated that the JFNK method is stable and robust in solving two-phase flow problems, even when phase appearance/disappearance exists.

  12. Application of spatial and non-spatial data analysis in determination of the factors that impact municipal solid waste generation rates in Turkey.

    PubMed

    Keser, Saniye; Duzgun, Sebnem; Aksoy, Aysegul

    2012-03-01

    In studies focusing on the factors that impact solid waste generation habits and rates, the potential spatial dependency in solid waste generation data is not considered in relating the waste generation rates to its determinants. In this study, spatial dependency is taken into account in determination of the significant socio-economic and climatic factors that may be of importance for the municipal solid waste (MSW) generation rates in different provinces of Turkey. Simultaneous spatial autoregression (SAR) and geographically weighted regression (GWR) models are used for the spatial data analyses. Similar to ordinary least squares regression (OLSR), regression coefficients are global in SAR model. In other words, the effect of a given independent variable on a dependent variable is valid for the whole country. Unlike OLSR or SAR, GWR reveals the local impact of a given factor (or independent variable) on the waste generation rates of different provinces. Results show that provinces within closer neighborhoods have similar MSW generation rates. On the other hand, this spatial autocorrelation is not very high for the exploratory variables considered in the study. OLSR and SAR models have similar regression coefficients. GWR is useful to indicate the local determinants of MSW generation rates. GWR model can be utilized to plan waste management activities at local scale including waste minimization, collection, treatment, and disposal. At global scale, the MSW generation rates in Turkey are significantly related to unemployment rate and asphalt-paved roads ratio. Yet, significances of these variables may diminish at local scale for some provinces. At local scale, different factors may be important in affecting MSW generation rates. PMID:22104614

  13. Optimising the application of multiple-capture traps for invasive species management using spatial simulation.

    PubMed

    Warburton, Bruce; Gormley, Andrew M

    2015-01-01

    Internationally, invasive vertebrate species pose a significant threat to biodiversity, agricultural production and human health. To manage these species a wide range of tools, including traps, are used. In New Zealand, brushtail possums (Trichosurus vulpecula), stoats (Mustela ermine), and ship rats (Rattus rattus) are invasive and there is an ongoing demand for cost-effective non-toxic methods for controlling these pests. Recently, traps with multiple-capture capability have been developed which, because they do not require regular operator-checking, are purported to be more cost-effective than traditional single-capture traps. However, when pest populations are being maintained at low densities (as is typical of orchestrated pest management programmes) it remains uncertain if it is more cost-effective to use fewer multiple-capture traps or more single-capture traps. To address this uncertainty, we used an individual-based spatially explicit modelling approach to determine the likely maximum animal-captures per trap, given stated pest densities and defined times traps are left between checks. In the simulation, single- or multiple-capture traps were spaced according to best practice pest-control guidelines. For possums with maintenance densities set at the lowest level (i.e. 0.5/ha), 98% of all simulated possums were captured with only a single capacity trap set at each site. When possum density was increased to moderate levels of 3/ha, having a capacity of three captures per trap caught 97% of all simulated possums. Results were similar for stoats, although only two potential captures per site were sufficient to capture 99% of simulated stoats. For rats, which were simulated at their typically higher densities, even a six-capture capacity per trap site only resulted in 80% kill. Depending on target species, prevailing density and extent of immigration, the most cost-effective strategy for pest control in New Zealand might be to deploy several single

  14. Optimising the Application of Multiple-Capture Traps for Invasive Species Management Using Spatial Simulation

    PubMed Central

    Warburton, Bruce; Gormley, Andrew M.

    2015-01-01

    Internationally, invasive vertebrate species pose a significant threat to biodiversity, agricultural production and human health. To manage these species a wide range of tools, including traps, are used. In New Zealand, brushtail possums (Trichosurus vulpecula), stoats (Mustela ermine), and ship rats (Rattus rattus) are invasive and there is an ongoing demand for cost-effective non-toxic methods for controlling these pests. Recently, traps with multiple-capture capability have been developed which, because they do not require regular operator-checking, are purported to be more cost-effective than traditional single-capture traps. However, when pest populations are being maintained at low densities (as is typical of orchestrated pest management programmes) it remains uncertain if it is more cost-effective to use fewer multiple-capture traps or more single-capture traps. To address this uncertainty, we used an individual-based spatially explicit modelling approach to determine the likely maximum animal-captures per trap, given stated pest densities and defined times traps are left between checks. In the simulation, single- or multiple-capture traps were spaced according to best practice pest-control guidelines. For possums with maintenance densities set at the lowest level (i.e. 0.5/ha), 98% of all simulated possums were captured with only a single capacity trap set at each site. When possum density was increased to moderate levels of 3/ha, having a capacity of three captures per trap caught 97% of all simulated possums. Results were similar for stoats, although only two potential captures per site were sufficient to capture 99% of simulated stoats. For rats, which were simulated at their typically higher densities, even a six-capture capacity per trap site only resulted in 80% kill. Depending on target species, prevailing density and extent of immigration, the most cost-effective strategy for pest control in New Zealand might be to deploy several single

  15. Models for assessing the spatial distribution of geodetic point patterns: application to geoid prediction quality

    NASA Astrophysics Data System (ADS)

    Hassouna, Raaed Mohamed Kamel

    2013-05-01

    In this study, some stochastic and deterministic models have been proposed for the assessment of the regularity and isotropy of geodetic point patterns. These models utilized realized point configurations within a rectangular window, leaning on stochastic geometry. As an illustrative example, the geographical extent of the Egyptian Territory was selected as a test window. The proposed models have agreed with the visual and qualitative characteristics of the investigated patterns. Also, it has been found that the stochastic and deterministic models for regularity and isotropy have very strong mutual correlation coefficients. Furthermore, the proposed models were applied to some geoid interpolation algorithms. In particular, the relationships among the data/check point distributions and the geoid interpolation accuracies, were investigated. Finally, a closed expression was proposed, which efficiently describes the relations among such features. So, it is recommended to use such approach for the pre-analysis and planning of the geographic distributions of point patterns in similar and other geodetic applications.

  16. Effect of spatial heterogeneities of water fluxes and application pattern on cadusafos fate on banana-cultivated andosols.

    PubMed

    Saison, C; Cattan, P; Louchart, X; Voltz, M

    2008-12-24

    In tropical humid environments under intensive banana production, pesticide transfer in waters can be of particular concern due to heavy rainfall, steep slopes, and soils with high infiltration capacities. The transfer in percolation and runoff waters of the nematicide cadusafos was investigated during a three month field experiment. The spatial heterogeneity of the banana plantation was taken into account by measuring percolation fluxes both under the banana plants and in the interrows with a specially designed lysimeter device installed at 60 cm depth. At the field scale, 0.34% of the pesticide applied was transferred in percolation, 0.13% in runoff. Forty-nine percent of cadusafos losses occurred by percolation under the banana plants, 23% by interrow percolation, and 28% by runoff. Losses were highest during the three weeks following cadusafos application, and this is also when dissipation in the soil was highest (calculated half-life in the soil: 7d). After this period, losses of cadusafos were low, both in soil and waters. Under the banana plant, saturated fluxes carried most of the pesticide, despite total percolation fluxes being at least five-times higher than saturated ones. Although overall pesticide transfer in water was low (0.5% of applied), it was not negligible due to the frequency of pesticide application in these areas. PMID:19053376

  17. Closed-loop adaptive optics using a spatial light modulator for sensing and compensating of optical aberrations in ophthalmic applications

    NASA Astrophysics Data System (ADS)

    Akondi, Vyas; Jewel, Md. Atikur Rahman; Vohnsen, Brian

    2014-09-01

    Sensing and compensating of optical aberrations in closed-loop mode using a single spatial light modulator (SLM) for ophthalmic applications is demonstrated. Notwithstanding the disadvantages of the SLM, in certain cases, this multitasking capability of the device makes it advantageous over existing deformable mirrors (DMs), which are expensive and in general used for aberration compensation alone. A closed-loop adaptive optics (AO) system based on a single SLM was built. Beam resizing optics were used to utilize the large active area of the device and hence make it feasible to generate 137 active subapertures for wavefront sensing. While correcting Zernike aberrations up to fourth order introduced with the help of a DM (for testing purposes), diffraction-limited resolution was achieved. It is shown that matched filter and intensity-weighted centroiding techniques stand out among others. Closed-loop wavefront correction of aberrations in backscattered light from the eyes of three healthy human subjects was demonstrated after satisfactory results were obtained using an artificial eye, which was simulated with a short focal length lens and a sheet of white paper as diffuser. It is shown that the closed-loop AO system based on a single SLM is capable of diffraction-limited correction for ophthalmic applications.

  18. Spatial services grid

    NASA Astrophysics Data System (ADS)

    Cao, Jian; Li, Qi; Cheng, Jicheng

    2005-10-01

    This paper discusses the concept, key technologies and main application of Spatial Services Grid. The technologies of Grid computing and Webservice is playing a revolutionary role in studying the spatial information services. The concept of the SSG (Spatial Services Grid) is put forward based on the SIG (Spatial Information Grid) and OGSA (open grid service architecture). Firstly, the grid computing is reviewed and the key technologies of SIG and their main applications are reviewed. Secondly, the grid computing and three kinds of SIG (in broad sense)--SDG (spatial data grid), SIG (spatial information grid) and SSG (spatial services grid) and their relationships are proposed. Thirdly, the key technologies of the SSG (spatial services grid) is put forward. Finally, three representative applications of SSG (spatial services grid) are discussed. The first application is urban location based services gird, which is a typical spatial services grid and can be constructed on OGSA (Open Grid Services Architecture) and digital city platform. The second application is region sustainable development grid which is the key to the urban development. The third application is Region disaster and emergency management services grid.

  19. DotAGWA: A case study in web-based architectures for connecting surface water models to spatially enabled web applications

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Automated Geospatial Watershed Assessment (AGWA) tool is a desktop application that uses widely available standardized spatial datasets to derive inputs for multi-scale hydrologic models (Miller et al., 2007). The required data sets include topography (DEM data), soils, climate, and land-cover ...

  20. The effect of application method on the temporal and spatial distribution of neonicotinoid insecticides in greenhouse zinnia and impact on aphid populations

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Greenhouse trials were designed to evaluate the effect the application technique would have on temporal and spatial movement of neonicotinoid insecticides imidacloprid and thiamethoxam through plant tissue. Mature Zinnia elegans plants were treated by either a soil drench of neonicotinoid insectici...

  1. Design optimization of the sensor spatial arrangement in a direct magnetic field-based localization system for medical applications.

    PubMed

    Marechal, Luc; Shaohui Foong; Zhenglong Sun; Wood, Kristin L

    2015-08-01

    Motivated by the need for developing a neuronavigation system to improve efficacy of intracranial surgical procedures, a localization system using passive magnetic fields for real-time monitoring of the insertion process of an external ventricular drain (EVD) catheter is conceived and developed. This system operates on the principle of measuring the static magnetic field of a magnetic marker using an array of magnetic sensors. An artificial neural network (ANN) is directly used for solving the inverse problem of magnetic dipole localization for improved efficiency and precision. As the accuracy of localization system is highly dependent on the sensor spatial location, an optimization framework, based on understanding and classification of experimental sensor characteristics as well as prior knowledge of the general trajectory of the localization pathway, for design of such sensing assemblies is described and investigated in this paper. Both optimized and non-optimized sensor configurations were experimentally evaluated and results show superior performance from the optimized configuration. While the approach presented here utilizes ventriculostomy as an illustrative platform, it can be extended to other medical applications that require localization inside the body. PMID:26736407

  2. Spatial organization of the gravitropic response in plants: applicability of the revised local curvature distribution model to Triticum aestivum coleoptiles.

    PubMed

    Meskauskas, A; Jurkoniene, S; Moore, D

    1999-08-01

    The revised local curvature distribution model, which provides accurate computer simulations of the gravitropic response of mushroom stems, was found to produce accurate simulations of the gravitropic reaction of wheat (Triticum aestivum) coleoptiles. The key feature of the mathematical model that enables it to approach universality of application is the assumption that the stem has an autonomic straightening reaction (curvature compensation or 'autotropism'). In the model, the local bending rate for any segment of the organ is determined by the difference between the 'bending signal' (generated by the gravitropic signal perception system) and a 'straightening signal' (which is proportional to the local curvature of the segment). The model reveals three major differences between the gravitropic reactions of wheat coleoptiles and Coprinus mushroom stems. First, in Coprinus, the capacity for autonomic straightening is much more concentrated in the apical region of the stem. Second, local perception of the gravitropic signal, which is necessary for exact simulation in Coprinus, is not needed in wheat coleoptiles (the corresponding constant in the model can be set to zero). Third, the transmission rate of the gravitropic signal is about seven times faster in wheat coleoptiles than in the mushroom stem. Thus, we demonstrate that a single model, depending on the values given to its parameters, is able to simulate the spatial organization of the gravitropic reaction of wheat coleoptiles and Coprinus mushroom stems. The model promises to be a valuable predictive tool in guiding future research into the gravitropic reaction of axial organs of all types. PMID:11542912

  3. The application of quaternions and other spatial representations to the reconstruction of re-entry vehicle motion.

    SciTech Connect

    De Sapio, Vincent

    2010-09-01

    The analysis of spacecraft kinematics and dynamics requires an efficient scheme for spatial representation. While the representation of displacement in three dimensional Euclidean space is straightforward, orientation in three dimensions poses particular challenges. The unit quaternion provides an approach that mitigates many of the problems intrinsic in other representation approaches, including the ill-conditioning that arises from computing many successive rotations. This report focuses on the computational utility of unit quaternions and their application to the reconstruction of re-entry vehicle (RV) motion history from sensor data. To this end they will be used in conjunction with other kinematic and data processing techniques. We will present a numerical implementation for the reconstruction of RV motion solely from gyroscope and accelerometer data. This will make use of unit quaternions due to their numerical efficacy in dealing with the composition of many incremental rotations over a time series. In addition to signal processing and data conditioning procedures, algorithms for numerical quaternion-based integration of gyroscope data will be addressed, as well as accelerometer triangulation and integration to yield RV trajectory. Actual processed flight data will be presented to demonstrate the implementation of these methods.

  4. Development of Knowledge Intensive Applications for Hospital

    NASA Astrophysics Data System (ADS)

    Kim, Jongho; Hong, Han-Kuk; Jang, Gil-Sang; Kim, Joung Yeon; Kim, Taehun

    Most studies of medical intelligence system have focused on the development of backend data repositories rather than frontend user applications. Also, they tend to lack systematic development models which demonstrate how user requirements inform system design and implementation. For these reasons, it is highly desirable to show the process of eliciting knowledge requirements in addition to the development process for knowledge-intensive applications. This research covers the implementation of a medical intelligence system based on analysis of knowledge requirements such as OLAP (On-line Analytical Processing) fundamental functionalities and knowledge types. The proposed medical intelligence system provides health care providers and their supporters with the ability to draw meaningful insights from very large, complex data sets. A real life case is presented to illustrate the system’s practical usage. Six application packages are defined, namely: explorer, analyzer, reporter, statistician, visualizer, and meta administrator. Finally, the study concludes with an evaluation of the developed system and future research directions.

  5. Enhancing a Low-Cost Virtual Reality Application through Constructivist Approach: The Case of Spatial Training of Middle Graders

    ERIC Educational Resources Information Center

    Samsudin, Khairulanuar; Rafi, Ahmad; Mohamad Ali, Ahmad Zamzuri; Abd. Rashid, Nazre

    2014-01-01

    The aim of this study is to develop and to test a low-cost virtual reality spatial trainer in terms of its effectiveness in spatial training. The researchers adopted three features deriving from the constructivist perspective to guide the design of the trainer, namely interaction, instruction, and support. The no control pre test post test…

  6. How Students Solve Problems in Spatial Geometry while Using a Software Application for Visualizing 3D Geometric Objects

    ERIC Educational Resources Information Center

    Widder, Mirela; Gorsky, Paul

    2013-01-01

    In schools, learning spatial geometry is usually dependent upon a student's ability to visualize three dimensional geometric configurations from two dimensional drawings. Such a process, however, often creates visual obstacles which are unique to spatial geometry. Useful software programs which realistically depict three dimensional geometric…

  7. Application of spatial synoptic classification in evaluating links between heat stress and cardiovascular mortality and morbidity in Prague, Czech Republic

    NASA Astrophysics Data System (ADS)

    Urban, Aleš; Kyselý, Jan

    2015-09-01

    Spatial synoptic classification (SSC) is here first employed in assessing heat-related mortality and morbidity in Central Europe. It is applied for examining links between weather patterns and cardiovascular (CVD) mortality and morbidity in an extended summer season (16 May-15 September) during 1994-2009. As in previous studies, two SSC air masses (AMs)—dry tropical (DT) and moist tropical (MT)—are associated with significant excess CVD mortality in Prague, while effects on CVD hospital admissions are small and insignificant. Excess mortality for ischaemic heart diseases is more strongly associated with DT, while MT has adverse effect especially on cerebrovascular mortality. Links between the oppressive AMs and excess mortality relate also to conditions on previous days, as DT and MT occur in typical sequences. The highest CVD mortality deviations are found 1 day after a hot spell's onset, when temperature as well as frequency of the oppressive AMs are highest. Following this peak is typically DT- to MT-like weather transition, characterized by decrease in temperature and increase in humidity. The transition between upward (DT) and downward (MT) phases is associated with the largest excess CVD mortality, and the change contributes to the increased and more lagged effects on cerebrovascular mortality. The study highlights the importance of critically evaluating SSC's applicability and benefits within warning systems relative to other synoptic and epidemiological approaches. Only a subset of days with the oppressive AMs is associated with excess mortality, and regression models accounting for possible meteorological and other factors explain little of the mortality variance.

  8. Spatially distributed flood forecasting in flash flood prone areas: Application to road network supervision in Southern France

    NASA Astrophysics Data System (ADS)

    Naulin, J.-P.; Payrastre, O.; Gaume, E.

    2013-04-01

    SummaryAccurate flood forecasts are critical to an efficient flood event management strategy. Until now, hydro-meteorological forecasts have mainly been used to establish early-warnings in France (meteorological and flood vigilance maps) or over the world (flash-flood guidances). These forecasts are typically limited either to the main streams covered by the flood forecasting services or to watersheds with specific assets like check dams, which in most cases are well gauged river sections, thus leaving aside large parts of the territory. This paper presents a distributed hydro-meteorological forecasting approach, which makes use of the high spatial and temporal resolution rainfall estimates that are now available, to provide information at ungauged sites. The proposed system intended to detect road inundation risks had initially been developed and tested in areas of limited size. This paper presents the extension of such a system to an entire region (i.e. the Gard region in Southern France), including over 2000 crossing points between rivers and roads and its validation with respect to a large data set of actual reported road inundations observed during recent flash flood events. These initial validation results appear to be most promising. The eventual proposed tool would provide the necessary information for flood event management services to identify the areas at risk and adopt appropriate safety and rescue measures: i.e. pre-positioning of rescue equipment, interruption of the traffic on the exposed roads and determination of safe access or evacuation routes. Moreover, beyond the specific application to the supervision of a road network, the research undertaken herein also provides results for the performance of hydro-meteorological forecasts on ungauged headwaters.

  9. Spatial variation of soil salinity in the Mexicali Valley, Mexico: application of a practical method for agricultural monitoring.

    PubMed

    Judkins, Gabriel; Myint, Soe

    2012-09-01

    The degradation of irrigated lands through the process of soil salinization, or the buildup of salts in the soil, has hampered recent increases in agricultural productivity and threatens the sustainability of large-scale cultivation in critical agricultural regions of the world. Rapid detection of soil salinity on a regional basis has been identified as key for effective mitigation of such land degradation. The ability to detect regional patterns of soil salinity at an accuracy sufficient for regional-scale resource management is demonstrated using Landsat 5 Thematic Mapper (TM) imagery. A case study of the Mexicali Valley of Baja California, Mexico was selected due to the region's agricultural significance and concern for future soil salinity increases. Surface soil salinity was mapped using georeferenced field measurements of electrical conductivity (EC), collected concurrently with Landsat 5 TM imagery. Correlations between EC measurements and common indices derived from the satellite imagery were used to produce a model of soil salinity through regression analysis. Landsat band 7, TNDVI, PCA 1, Tasseled Cap 3 and Tasseled Cap 5 were found to offer the most promising correlations with surface soil salinity. Generally low levels of soil salinity were detected, however, distinct areas of elevated surface salinity were detected at levels potentially impacting sensitive crops cultivated within the region. The difficulty detecting low levels of salinity and the mid-range spatial resolution of Landsat 5 TM imagery restrict the applicability of this methodology to the study of broad regional patterns of degradation most appropriate for use by regional resource managers. PMID:22744157

  10. Developing an entropy-based model of spatial information estimation and its application in the design of precipitation gauge networks

    NASA Astrophysics Data System (ADS)

    Su, Ho-Ting; You, Gene Jiing-Yun

    2014-11-01

    This study proposed a spatial information estimation model for the analysis of precipitation gauge networks, to improve on previous methods based on information theory. The proposed model employs a two-dimensional transinformation-distance (T-D) relationship in conjunction with multivariate information approximation to estimate transinformation to ungauged locations from existing stations, while taking into consideration the influence of multiple stations and anisotropy. The proposed model is used to evaluate the spatial distribution of precipitation data and the characteristics of information transfer, which are then applied in a spatial optimization algorithm for the selection of additional station locations. This framework was implemented to investigate temporal and spatial patterns in information content in the Shihmen Reservoir watershed. The results demonstrate obvious anisotropy associated with the delivery of information. By comparing different cases, it was determined that the efficiency of information delivery dominates the spatial distribution of the information content, such that eccentricity is merely supplemental. Efficiency in information delivery is also heavily influenced by temporal scale. For data covering long intervals (monthly and annual), efficiency in the delivery of information is relatively high, while the uncertainty or heterogeneity of hourly or daily time series produces low spatial correlations due to the inefficient delivery of information. The proposed spatial optimization algorithm confirmed that the optimal location for new stations lies close to the center of low information zones. Additional stations could improve information content considerably; however, the margin of improvement decreases with the number of stations.

  11. Identifying Spatial Clusters of Schistosomiasis in Anhui Province of China: A Study from the Perspective of Application

    PubMed Central

    Sun, Liqian; Chen, Yue; Lynn, Henry; Wang, Qizhi; Zhang, Shiqing; Li, Rui; Xia, Congcong; Jiang, Qingwu; Hu, Yi; Gao, Fenghua; Zhang, Zhijie

    2015-01-01

    With the strategy shifting from morbidity control to transmission interruption, the burden of schistosomiasis in China has been declining over the past decade. However, further controls of the epidemic in the lake and marshland regions remain a challenge. Prevalence data at county level were obtained from the provincial surveillance system in Anhui during 1997–2010. Spatial autocorrelation analysis and spatial scan statistics were combined to assess the spatial pattern of schistosomiasis. The spatial-temporal cluster analysis based on retrospective space-time scan statistics was further used to detect risk clusters. The Global Moran’s I coefficients were mostly statistically significant during 1997–2004 but not significant during 2005–2010. The clusters detected by two spatial cluster methods occurred in Nanling, Tongling, Qingyang and Wuhu during 1997–2004, and Guichi and Wuhu from 2005 to 2010, respectively. Spatial-temporal cluster analysis revealed 2 main clusters, namely Nanling (1999–2002) and Guichi (2005–2008). The clustering regions were significantly narrowed while the spatial extent became scattered during the study period. The high-risk areas shifted from the low reaches of the Yangtze River to the upper stream, suggesting the focus of schistosomiasis control should be shifted accordingly and priority should be given to the snail habitats within the high-risk areas of schistosomiasis. PMID:26393632

  12. Identifying Spatial Clusters of Schistosomiasis in Anhui Province of China: A Study from the Perspective of Application.

    PubMed

    Sun, Liqian; Chen, Yue; Lynn, Henry; Wang, Qizhi; Zhang, Shiqing; Li, Rui; Xia, Congcong; Jiang, Qingwu; Hu, Yi; Gao, Fenghua; Zhang, Zhijie

    2015-09-01

    With the strategy shifting from morbidity control to transmission interruption, the burden of schistosomiasis in China has been declining over the past decade. However, further controls of the epidemic in the lake and marshland regions remain a challenge. Prevalence data at county level were obtained from the provincial surveillance system in Anhui during 1997-2010. Spatial autocorrelation analysis and spatial scan statistics were combined to assess the spatial pattern of schistosomiasis. The spatial-temporal cluster analysis based on retrospective space-time scan statistics was further used to detect risk clusters. The Global Moran's I coefficients were mostly statistically significant during 1997-2004 but not significant during 2005-2010. The clusters detected by two spatial cluster methods occurred in Nanling, Tongling, Qingyang and Wuhu during 1997-2004, and Guichi and Wuhu from 2005 to 2010, respectively. Spatial-temporal cluster analysis revealed 2 main clusters, namely Nanling (1999-2002) and Guichi (2005-2008). The clustering regions were significantly narrowed while the spatial extent became scattered during the study period. The high-risk areas shifted from the low reaches of the Yangtze River to the upper stream, suggesting the focus of schistosomiasis control should be shifted accordingly and priority should be given to the snail habitats within the high-risk areas of schistosomiasis. PMID:26393632

  13. Spatial wildlife-vehicle collision models: a review of current work and its application to transportation mitigation projects.

    PubMed

    Gunson, Kari E; Mountrakis, Giorgos; Quackenbush, Lindi J

    2011-04-01

    In addition to posing a serious risk to motorist safety, vehicle collisions with wildlife are a significant threat for many species. Previous spatial modeling has concluded that wildlife-vehicle collisions (WVCs) exhibit clustering on roads, which is attributed to specific landscape and road-related factors. We reviewed twenty-four published manuscripts that used generalized linear models to statistically determine the influence that numerous explanatory predictors have on the location of WVCs. Our motivation was to summarize empirical WVC findings to facilitate application of this knowledge to planning, and design of mitigation strategies on roads. In addition, commonalities between studies were discussed and recommendations for future model design were made. We summarized the type and measurement of each significant predictor and whether they potentially increased or decreased the occurrence of collisions with ungulates, carnivores, small-medium vertebrates, birds, and amphibians and reptiles. WVCs commonly occurred when roads bisect favorable cover, foraging, or breeding habitat for specific species or groups of species. WVCs were generally highest on road sections with high traffic volumes, or low motorist visibility, and when roads cut through drainage movement corridors, or level terrain. Ungulates, birds, small-medium vertebrates, and carnivore collision locations were associated with road-side vegetation and other features such as salt pools. In several cases, results were spurious due to confounding and interacting predictors within the same model. For example, WVCs were less likely to occur when a road bisected steep slopes; however, steep slopes may be located along specific road-types and habitat that also influence the occurrence of WVCs. In conclusion, this review showed that much of the current literature has gleaned the obvious, broad-scale relationships between WVCs and predictors from available data sets, and localized studies can provide unique

  14. Condensation of earthquake location distributions: Optimal spatial information encoding and application to multifractal analysis of south Californian seismicity.

    PubMed

    Kamer, Yavor; Ouillon, Guy; Sornette, Didier; Wössner, Jochen

    2015-08-01

    We present the "condensation" method that exploits the heterogeneity of the probability distribution functions (PDFs) of event locations to improve the spatial information content of seismic catalogs. As its name indicates, the condensation method reduces the size of seismic catalogs while improving the access to the spatial information content of seismic catalogs. The PDFs of events are first ranked by decreasing location errors and then successively condensed onto better located and lower variance event PDFs. The obtained condensed catalog differs from the initial catalog by attributing different weights to each event, the set of weights providing an optimal spatial representation with respect to the spatially varying location capability of the seismic network. Synthetic tests on fractal distributions perturbed with realistic location errors show that condensation improves spatial information content of the original catalog, which is quantified by the likelihood gain per event. Applied to Southern California seismicity, the new condensed catalog highlights major mapped fault traces and reveals possible additional structures while reducing the catalog length by ∼25%. The condensation method allows us to account for location error information within a point based spatial analysis. We demonstrate this by comparing the multifractal properties of the condensed catalog locations with those of the original catalog. We evidence different spatial scaling regimes characterized by distinct multifractal spectra and separated by transition scales. We interpret the upper scale as to agree with the thickness of the brittle crust, while the lower scale (2.5 km) might depend on the relocation procedure. Accounting for these new results, the epidemic type aftershock model formulation suggests that, contrary to previous studies, large earthquakes dominate the earthquake triggering process. This implies that the limited capability of detecting small magnitude events cannot be used

  15. Condensation of earthquake location distributions: Optimal spatial information encoding and application to multifractal analysis of south Californian seismicity

    NASA Astrophysics Data System (ADS)

    Kamer, Yavor; Ouillon, Guy; Sornette, Didier; Wössner, Jochen

    2015-08-01

    We present the "condensation" method that exploits the heterogeneity of the probability distribution functions (PDFs) of event locations to improve the spatial information content of seismic catalogs. As its name indicates, the condensation method reduces the size of seismic catalogs while improving the access to the spatial information content of seismic catalogs. The PDFs of events are first ranked by decreasing location errors and then successively condensed onto better located and lower variance event PDFs. The obtained condensed catalog differs from the initial catalog by attributing different weights to each event, the set of weights providing an optimal spatial representation with respect to the spatially varying location capability of the seismic network. Synthetic tests on fractal distributions perturbed with realistic location errors show that condensation improves spatial information content of the original catalog, which is quantified by the likelihood gain per event. Applied to Southern California seismicity, the new condensed catalog highlights major mapped fault traces and reveals possible additional structures while reducing the catalog length by ˜25 % . The condensation method allows us to account for location error information within a point based spatial analysis. We demonstrate this by comparing the multifractal properties of the condensed catalog locations with those of the original catalog. We evidence different spatial scaling regimes characterized by distinct multifractal spectra and separated by transition scales. We interpret the upper scale as to agree with the thickness of the brittle crust, while the lower scale (2.5 km) might depend on the relocation procedure. Accounting for these new results, the epidemic type aftershock model formulation suggests that, contrary to previous studies, large earthquakes dominate the earthquake triggering process. This implies that the limited capability of detecting small magnitude events cannot be

  16. Relative impacts of the fragmentation and spatial structure of habitats on freshwater fish distributions: application on French watersheds (Invited)

    NASA Astrophysics Data System (ADS)

    Le Pichon, C.; Belliard, J.; Talès, E.; Gorges, G.; Clément, F.

    2009-12-01

    Most of the rivers of the Ile de France region, intimately linked with the megalopolis of Paris, are severely altered and freshwater fishes are exposed to habitat alteration, reduced connectivity and pollution. Several species thus present fragmented distributions and decreasing densities. In this context, the European Water Framework Directive (2000) has goals of hydrosystems rehabilitation and no further damage. In particular, the preservation and restoration of ecological connectivity of river networks is a key element for fish populations. These goals require the identification of natural and anthropological factors which influence the spatial distribution of species. We have proposed a riverscape approach, based on landscape ecology concepts, combined with a set of spatial analysis methods to assess the multiscale relationships between the spatial pattern of fish habitats and processes depending on fish movements. In particular, we used this approach to test the relative roles of spatial arrangement of fish habitats and the presence of physical barriers in explaining fish spatial distributions in a small rural watershed (106 km2). We performed a spatially continuous analysis of fish-habitat relationships. Fish habitats and physical barriers were mapped along the river network (33 km) with a GPS and imported into a GIS. In parallel, a longitudinal electrofishing survey of the distribution and abundance of fishes was made using a point abundance sampling scheme. Longitudinal arrangement of fish habitats were evaluated using spatial analysis methods: patch/distance metrics and moving window analysis. Explanatory models were developed to test the relative contribution of local environmental variables and spatial context in explaining fish presence. We have recorded about 100 physical barriers, on average one every 330 meters; most artificial barriers were road pipe culverts, falls associated with ponds and sluice gates. Contrasted fish communities and densities

  17. An application of GIS and Bayesian network in studying spatial-causal relations between enterprises and environmental factors

    NASA Astrophysics Data System (ADS)

    Shen, Tiyan; Li, Xi; Li, Maiqing

    2009-10-01

    The paper intends to employ Geographic Information System (GIS) and Bayesian Network to discover the spatial causality between enterprises and environmental factors in Beijing Metropolis. The census data of Beijing was spatialized by means of GIS in the beginning, and then the training data was made using density mapping technique. Base on the training data, the structure of a Bayesian Network was learnt with the help of Maximum Weight Spanning Tree. Eight direct relations were discussed in the end, of which, the most exciting discovery, "Enterprise-Run Society", as the symbol of the former planned economy, was emphasized in the spatial relations between heavy industry and schools. Though the final result is not so creative in economic perspective, it is of significance in technique view due to all discoveries were drawn from data, therefore leading to the realization of the importance of GIS and data mining to economic geography research.

  18. Analysis of the spatial climate structure from a viticultural perspective. Application to determine viticulture suitability and zonification in Extremadura (Spain)

    NASA Astrophysics Data System (ADS)

    Rebollo, Francisco J.; Moral, Francisco J.; Paniagua, Luís L.; García, Abelardo

    2014-05-01

    The basis for assessing the suitability for viticulture in wine regions is an accurate depiction of the temperature spatial distribution. Thus, using data for a long time internal (1980-2011) and from 117 meteorological stations, four bioclimatic indices were calculated and their spatial distribution patterns were mapped using a multivariate method, the regression-kriging technique. It was obtained that the spatial variability of climate within Extremaduran natural regions (NRs) is significant. Although the warmer conditions predominate in Extremadura, some NRs have part of their territory by up to eight climate classes; this information enables a better understanding of the viticulture suitability within each NR and delineating homogeneous zones. Finally, comparisons of Extremaduran NRs with others worlwide were conducted, which should be taken into account to select varieties and assess the possibilities of producing new wines.

  19. Calculation of spatial distribution of optical escape factor and its application to He I collisional-radiative model

    SciTech Connect

    Iida, Yohei; Kado, Shinichiro; Tanaka, Satoru

    2010-12-15

    An integral analytical formula for a spatial distribution of the optical escape factor (OEF) in an infinite cylindrical plasma is derived as a function of an arbitrary upper state spatial density profile, the temperature ratio of the upper state to the lower state, and the optical depth of the corresponding transition. Test calculations are carried out for three different upper state profiles, i.e., uniform (rectangular), parabolic, and Gaussian upper state profiles. The OEF takes on negative values at the periphery of the parabolic and Gaussian upper state profiles. These characteristics cannot be expressed by the conventional OEF formulas derived for the center of the plasma, even though the optical depth is increased. In addition to the analytical derivation of the formula, two practical formulas are proposed: an empirical formula of the spatial distribution of the OEF for the Gaussian upper state density profile and a linear formula of the OEF distribution for upper state profiles that are expressed as linear combinations. These formulas enable us to calculate the spatial distribution of the OEF for the multiple-Gaussian upper state profile without the need for time-consuming integral calculations.

  20. Spatial and temporal single-cell volume estimation by a fluorescence imaging technique with application to astrocytes in primary culture

    NASA Astrophysics Data System (ADS)

    Khatibi, Siamak; Allansson, Louise; Gustavsson, Tomas; Blomstrand, Fredrik; Hansson, Elisabeth; Olsson, Torsten

    1999-05-01

    Cell volume changes are often associated with important physiological and pathological processes in the cell. These changes may be the means by which the cell interacts with its surrounding. Astroglial cells change their volume and shape under several circumstances that affect the central nervous system. Following an incidence of brain damage, such as a stroke or a traumatic brain injury, one of the first events seen is swelling of the astroglial cells. In order to study this and other similar phenomena, it is desirable to develop technical instrumentation and analysis methods capable of detecting and characterizing dynamic cell shape changes in a quantitative and robust way. We have developed a technique to monitor and to quantify the spatial and temporal volume changes in a single cell in primary culture. The technique is based on two- and three-dimensional fluorescence imaging. The temporal information is obtained from a sequence of microscope images, which are analyzed in real time. The spatial data is collected in a sequence of images from the microscope, which is automatically focused up and down through the specimen. The analysis of spatial data is performed off-line and consists of photobleaching compensation, focus restoration, filtering, segmentation and spatial volume estimation.

  1. Correction of systematic spatial noise in push-broom hyperspectral sensors: application to CHRIS/PROBA images.

    PubMed

    Gómez-Chova, Luis; Alonso, Luis; Guanter, Luis; Camps-Valls, Gustavo; Calpe, Javier; Moreno, José

    2008-10-01

    Hyperspectral remote sensing images are affected by different types of noise. In addition to typical random noise, nonperiodic partially deterministic disturbance patterns generally appear in the data. These patterns, which are intrinsic to the image formation process, are characterized by a high degree of spatial and spectral coherence. We present a new technique that faces the problem of removing the spatially coherent noise known as vertical striping, usually found in images acquired by push-broom sensors. The developed methodology is tested on data acquired by the Compact High Resolution Imaging Spectrometer (CHRIS) onboard the Project for On-board Autonomy (PROBA) orbital platform, which is a typical example of a push-broom instrument exhibiting a relatively high noise component. The proposed correction method is based on the hypothesis that the vertical disturbance presents higher spatial frequencies than the surface radiance. A technique to exclude the contribution of the spatial high frequencies of the surface from the destriping process is introduced. First, the performance of the proposed algorithm is tested on a set of realistic synthetic images with added modeled noise in order to quantify the noise reduction and the noise estimation accuracy. Then, algorithm robustness is tested on more than 350 real CHRIS images from different sites, several acquisition modes (different spatial and spectral resolutions), and covering the full range of possible sensor temperatures. The proposed algorithm is benchmarked against the CHRIS reference algorithm. Results show excellent rejection of the noise pattern with respect to the original CHRIS images, especially improving the removal in those scenes with a natural high contrast. However, some low-frequency components still remain. In addition, the developed correction model captures and corrects the dependency of the noise patterns on sensor temperature, which confirms the robustness of the presented approach. PMID

  2. Simulating Human and Environmental Exposure from Hand-Held Knapsack Pesticide Application: Be-WetSpa-Pest, an Integrative, Spatially Explicit Modeling Approach.

    PubMed

    Binder, Claudia R; García-Santos, Glenda; Andreoli, Romano; Diaz, Jaime; Feola, Giuseppe; Wittensoeldner, Moritz; Yang, Jing

    2016-05-25

    This paper presents an integrative and spatially explicit modeling approach for analyzing human and environmental exposure from pesticide application of smallholders in the potato-producing Andean region in Colombia. The modeling approach fulfills the following criteria: (i) it includes environmental and human compartments; (ii) it contains a behavioral decision-making model for estimating the effect of policies on pesticide flows to humans and the environment; (iii) it is spatially explicit; and (iv) it is modular and easily expandable to include additional modules, crops, or technologies. The model was calibrated and validated for the Vereda La Hoya and was used to explore the effect of different policy measures in the region. The model has moderate data requirements and can be adapted relatively easily to other regions in developing countries with similar conditions. PMID:26828854

  3. Spatial distribution and accessibility to public sector tertiary care teaching hospitals in Karachi: A Geographic Information Systems application.

    PubMed

    Shaikh, Masood Ali; Ali, Mir Shabbar

    2016-07-01

    Optimal utilization of specialized curative healthcare services is contingent on spatial access to tertiary-care hospitals by the targeted population. The objectives of this study were to determine the spatial distribution of public sector tertiary-care teaching hospitals in Karachi, and to use GIS and network analysis for modeling the accessibility to these hospitals for Karachi residents. Maps of three, six, and nine kilometer buffers were created around the five selected hospitals to determine which towns of Karachi are either entirely or partially covered/accessible. Most of the towns in Karachi were covered either partially or completely by the three buffers and service areas of 3,6, and 9 kilometers around the five selected hospitals. This study highlights the limitations of using publicly available data for road network, and the need for creating and making available in public domain, comprehensive road network vector dataset in conjunction with population breakdowns by administrative subdivisions. PMID:27427142

  4. Method and apparatus for spatially variable rate application of agricultural chemicals based on remotely sensed vegetation data

    NASA Technical Reports Server (NTRS)

    Hood, Kenneth Brown (Inventor); Seal, Michael R. (Inventor); Lewis, Mark David (Inventor); Johnson, James William (Inventor)

    2004-01-01

    Remotely sensed spectral image data are used to develop a Vegetation Index file which represents spatial variations of actual crop vigor throughout a field that is under cultivation. The latter information is processed to place it in a format that can be used by farm personnel to correlate and calibrate it with actually observed crop conditions existing at control points within the field. Based on the results, farm personnel formulate a prescription request, which is forwarded via email or FTP to a central processing site, where the prescription is prepared. The latter is returned via email or FTP to on-side farm personnel, who can load it into a controller on a spray rig that directly applies inputs to the field at a spatially variable rate.

  5. Method and system for spatially variable rate application of agricultural chemicals based on remotely sensed vegetation data

    NASA Technical Reports Server (NTRS)

    Hood, Kenneth Brown (Inventor); Seal, Michael R. (Inventor); Lewis, Mark David (Inventor); Johnson, James William (Inventor)

    2007-01-01

    Remotely sensed spectral image data are used to develop a Vegetation Index file which represents spatial variations of actual crop vigor throughout a field that is under cultivation. The latter information is processed to place it in a format that can be used by farm personnel to correlate and calibrate it with actually observed crop conditions existing at control points within the field. Based on the results, farm personnel formulate a prescription request, which is forwarded via email or FTP to a central processing site, where the prescription is prepared. The latter is returned via email or FTP to on-side farm personnel, who can load it into a controller on a spray rig that directly applies inputs to the field at a spatially variable rate.

  6. SEHR-ECHO v1.0: a Spatially-Explicit Hydrologic Response model for ecohydrologic applications

    NASA Astrophysics Data System (ADS)

    Schaefli, Bettina; Nicótina, Ludovico; Da Ronco, Pierfrancesco; Bertuzzo, Enrico; Rinaldo, Andrea

    2015-04-01

    We present here the SEHR-ECHO model, which stands for Spatially Explicit Hydrologic Response (SEHR) model developed at the Laboratory of Ecohydrology (ECHO) of the Ecole Polytechnique Fédérale de Lausanne. The model is being developed for the spatially-explicit simulation of streamflow and transport processes at the catchment scale. The key concept of the model is the formulation of water transport by geomorphologic travel time distributions: the mobilization of water (and possibly dissolved solutes) is simulated at the subcatchment scale and the resulting responses are convolved with the travel paths distribution within the river network to obtain the hydrologic response at the catchment outlet. The Matlab source code of the current version for alpine streamflow simulation is already freely available. A truly free open source version using Python will become available in the future.

  7. Enabling multi-disciplinary climate science through the application of GIS and high-resolution spatial data

    NASA Astrophysics Data System (ADS)

    Altmann, G.; Wilson, C. J.; Gangodagamage, C.; Wullschleger, S. D.

    2013-12-01

    Multidisciplinary field studies in climate science require effective methods for communicating data needs across a broad range of spatial and temporal scales. The Next Generation Ecosystem Experiment-Arctic seeks to reduce uncertainty in climate prediction by investigating critical land-atmosphere interactions in terrestrial ecosystems of Alaska. Using high-resolution LiDAR imagery and GIS, we applied geographic visualization principles to synthesize spatial data and facilitate cross-discipline communication for field planning, instrument implementation and model data integration. We hypothesized that providing three-dimensional (3D) representation of arctic landscape features would enhance perception and provide an effective medium to better optimize further field studies and analyses. Results indicate that key landscape features, such as polygonal ground and drained thaw lake basins (DTLB), represented in 3D maps offered superior recognition and differentiation among these features than traditional 2D maps. When overlaying 3D landscape features with high-resolution spatial data, such as WorldView-2 panchromatic imagery, digital elevation models (DEM), remotely derived indexes such as NDVI, or site instrumentation, further recognition and quantification of landscape processes was attained. Conversely, we observed that data inclusion in excess resulted in poor cognition of key features and/or themes. At various scales, 3D visualization proved to be effective at characterizing both large-scale (1:50) site level characteristics (polygon/trough), as well as small-scale (1:500) regional features (high vs. low polygon terrain). We conclude that applying GIS and high-resolution spatial data to create 3D visualizations is highly effective in representing key arctic landscape features across a wide range of scales. When combining multiple data layers (in moderation), these visualizations prove to be a valuable tool for communicating data needs, refining field

  8. Spatial Data Analysis.

    PubMed

    Banerjee, Sudipto

    2016-03-18

    With increasing accessibility to geographic information systems (GIS) software, statisticians and data analysts routinely encounter scientific data sets with geocoded locations. This has generated considerable interest in statistical modeling for location-referenced spatial data. In public health, spatial data routinely arise as aggregates over regions, such as counts or rates over counties, census tracts, or some other administrative delineation. Such data are often referred to as areal data. This review article provides a brief overview of statistical models that account for spatial dependence in areal data. It does so in the context of two applications: disease mapping and spatial survival analysis. Disease maps are used to highlight geographic areas with high and low prevalence, incidence, or mortality rates of a specific disease and the variability of such rates over a spatial domain. They can also be used to detect hot spots or spatial clusters that may arise owing to common environmental, demographic, or cultural effects shared by neighboring regions. Spatial survival analysis refers to the modeling and analysis for geographically referenced time-to-event data, where a subject is followed up to an event (e.g., death or onset of a disease) or is censored, whichever comes first. Spatial survival analysis is used to analyze clustered survival data when the clustering arises from geographical regions or strata. Illustrations are provided in these application domains. PMID:26789381

  9. Approaches to Capture Variance Differences in Rest fMRI Networks in the Spatial Geometric Features: Application to Schizophrenia

    PubMed Central

    Gopal, Shruti; Miller, Robyn L.; Baum, Stefi A.; Calhoun, Vince D.

    2016-01-01

    Identification of functionally connected regions while at rest has been at the forefront of research focusing on understanding interactions between different brain regions. Studies have utilized a variety of approaches including seed based as well as data-driven approaches to identifying such networks. Most such techniques involve differentiating groups based on group mean measures. There has been little work focused on differences in spatial characteristics of resting fMRI data. We present a method to identify between group differences in the variability in the cluster characteristics of network regions within components estimated via independent vector analysis (IVA). IVA is a blind source separation approach shown to perform well in capturing individual subject variability within a group model. We evaluate performance of the approach using simulations and then apply to a relatively large schizophrenia data set (82 schizophrenia patients and 89 healthy controls). We postulate, that group differences in the intra-network distributional characteristics of resting state network voxel intensities might indirectly capture important distinctions between the brain function of healthy and clinical populations. Results demonstrate that specific areas of the brain, superior, and middle temporal gyrus that are involved in language and recognition of emotions, show greater component level variance in amplitude weights for schizophrenia patients than healthy controls. Statistically significant correlation between component level spatial variance and component volume was observed in 19 of the 27 non-artifactual components implying an evident relationship between the two parameters. Additionally, the greater spread in the distance of the cluster peak of a component from the centroid in schizophrenia patients compared to healthy controls was observed for seven components. These results indicate that there is hidden potential in exploring variance and possibly higher

  10. Statistical monitoring of spatial patterns of environmental indices for integrated ecosystem assessment: Application to the Bay of Biscay pelagic zone

    NASA Astrophysics Data System (ADS)

    Woillez, Mathieu; Petitgas, Pierre; Huret, Martin; Struski, Caroline; Léger, Fabien

    2010-10-01

    Monitoring the environment of fish is a key component of the ecosystem approach to fisheries management. Here, we propose a methodology to statistically monitor time series of maps of environmental indices. These maps were derived from a 37-year hindcast of a coupled physical-biogeochemical model. The space-time variability in the maps was decomposed using empirical orthogonal functions into time-invariant spatial patterns and time-varying amplitudes for these patterns. A statistical process control chart was then applied to the time series of the amplitudes. In that way, changes were detected with known statistical performance. The monitoring system also specified how long the changes lasted and which years, seasons and zones were affected. Results for all indices were assembled in an integrative dashboard of the detected deviations. For illustration, the procedure was applied to the Bay of Biscay pelagic zone. The selected environmental indices characterized the evolution of hydrological structures such as fronts and river plumes, as well as changes in temperature, water column stratification, horizontal current flow and primary production. A major result was that, in the last decade, sea surface temperature showed repeated significant shifts towards warming, which were largest in the northern half of the Bay, while the spatial extension of river plumes over the shelf alternated between wet and dry years. From 2005, several other indices showed repeated significant deviations: increase in sea bottom temperature, increase in the depth of the pycnocline and changes in coastal currents. The procedure provided an integrated view of ecosystem variability and change for all its components and their spatial organization.