Sample records for tanganyika east african

  1. Geochemical and Sedimentological Records of Late Quaternary Climate Change, Lake Tanganyika, Tropical East Africa

    NASA Astrophysics Data System (ADS)

    Felton, A. A.; Russell, J. M.; Cohen, A. S.; Baker, M. E.; McGlue, M. M.; Lezzar, K. E.

    2005-12-01

    We have analyzed piston core records from Lake Tanganyika (western Tanzania, East African Rift Valley) to investigate possible signals of tropical paleoclimate change during the Late Quaternary. Long paleoclimate records from East Africa are of importance for understanding climatic processes such as the role of solar variability in regulating tropical climates at Milankovitch time scales, and the relationship between abrupt climate changes, migration of Intertropical Convergence Zone, and regional climate variability (Nicholson, 2000). However, records of pre-Holocene climate variability from tropical African lakes (>25ka) are still quite rare. Long records from Lake Tanganyika are of particular interest given the lake's antiquity and its demonstrated potential for producing high resolution (frequently annually laminated) sedimentary records (Cohen et al., 1993). We analyzed physical properties, grain size, total organic carbon, major, minor and trace element variability, and biogenic silica data for a 7.75 m core from the Kalya slope and horst region of central Lake Tanganyika at 640m water depth. Nine 14C dates provide an age model for the core, which spans ~62 cal kyr. Elemental concentrations preserved in Lake Tanganyika sediments record variability in deposition and runoff into the lake basin. Under conditions of rapid erosion, exposure and rapid weathering of bedrock has been shown to generate high concentrations of original silicate minerals enriched in soluble cations such as sodium and potassium, elements that are also biologically conservative. Prior to 40ka cal yr. core sediments are characterized by high magnetic susceptibility, intermediate levels of organic carbon, low to intermediate levels of biogenic silica, and fine grain size, indicative of relatively high precipitation. There is a profound decrease in magnetic susceptibility, a decrease in organic carbon and an increase in grain size at 40ka cal yr, which persists until ~16ka cal yr. Seismic

  2. The North Tanganyika hydrothermal fields, East African Rift system: Their tectonic control and relationship to volcanism and rift segmentation

    NASA Astrophysics Data System (ADS)

    Coussement, C.; Gente, P.; Rolet, J.; Tiercelin, J.-J.; Wafula, M.; Buku, S.

    1994-10-01

    The two branches of the East African Rift system include numerous hydrothermal fields, which are closely related to the present fault motion and to volcanic and seismic activity. In this study structural data from Pemba and Cape Banza hydrothermal fields (western branch, North Tanganyika, Zaire) are discussed in terms of neotectonic phenomena. Different types of records, such as fieldwork (onshore and underwater) and LANDSAT and SPOT imagery, are used to explain structural controls on active and fossil hydrothermal systems and their significance. The Pemba site is located at the intersection of 000-020°-trending normal faults belonging to the Uvira Border Fault System and a 120-130°-trending transtensional fault zone and is an area of high seismicity, with events of relatively large magnitude ( Ms < 6.5). The Cape Banza site occurs at the northern end of the Ubawari Peninsula horst. It is bounded by two fault systems trending 015° and is characterized seismically by events of small magnitude ( Ms < 4). The hydrothermal area itself is tectonically controlled by structures striking 170-180° and 080°. The analysis of both hydrothermal areas demonstrates the rejuvenation of older Proterozoic structures during Recent rift faulting and the location of the hydrothermal activity at the junctions of submeridian and transverse faults. The fault motion is compatible with a regional direction of extension of 090-110°. The Cape Banza and Pemba hydrothermal fields may testify to magma chambers existing below the junctions of the faults. They appear to form at structural nodes and may represent a future volcanic province. Together with the four surface volcanic provinces existing along the western branch, they possibly indicate an incipient rift segmentation related to 'valley-valley' or 'transverse fault-valley' junctions, contrasting with the spacing of the volcanoes measured in the eastern branch. These spacings appear to express the different elastic thicknesses between

  3. A tribal level phylogeny of Lake Tanganyika cichlid fishes based on a genomic multi-marker approach

    PubMed Central

    Meyer, Britta S.; Matschiner, Michael; Salzburger, Walter

    2015-01-01

    The species-flocks of cichlid fishes in the East African Great Lakes Victoria, Malawi and Tanganyika constitute the most diverse extant adaptive radiations in vertebrates. Lake Tanganyika, the oldest of the lakes, harbors the morphologically and genetically most diverse assemblage of cichlids and contains the highest number of endemic cichlid genera of all African lakes. Based on morphological grounds, the Tanganyikan cichlid species have been grouped into 12–16 distinct lineages, so-called tribes. While the monophyly of most of the tribes is well established, the phylogenetic relationships among the tribes remain largely elusive. Here, we present a new tribal level phylogenetic hypothesis for the cichlid fishes of Lake Tanganyika that is based on the so far largest set of nuclear markers and a total alignment length of close to 18 kb. Using next-generation amplicon sequencing with the 454 pyrosequencing technology, we compiled a dataset consisting of 42 nuclear loci in 45 East African cichlid species, which we subjected to maximum likelihood and Bayesian inference phylogenetic analyses. We analyzed the entire concatenated dataset and each marker individually, and performed a Bayesian concordance analysis and gene tree discordance tests. Overall, we find strong support for a position of the Oreochromini, Boulengerochromini, Bathybatini and Trematocarini outside of a clade combining the substrate spawning Lamprologini and the mouthbrooding tribes of the ‘H-lineage’, which are both strongly supported to be monophyletic. The Eretmodini are firmly placed within the ‘H-lineage’, as sister-group to the most species-rich tribe of cichlids, the Haplochromini. The phylogenetic relationships at the base of the ‘H-lineage’ received less support, which is likely due to high speciation rates in the early phase of the radiation. Discordance among gene trees and marker sets further suggests the occurrence of past hybridization and/or incomplete lineage sorting in

  4. The Impact of the Geologic History and Paleoclimate on the Diversification of East African Cichlids

    PubMed Central

    Danley, Patrick D.; Husemann, Martin; Ding, Baoqing; DiPietro, Lyndsay M.; Beverly, Emily J.; Peppe, Daniel J.

    2012-01-01

    The cichlid fishes of the East African Great Lakes are the largest extant vertebrate radiation identified to date. These lakes and their surrounding waters support over 2,000 species of cichlid fish, many of which are descended from a single common ancestor within the past 10 Ma. The extraordinary East African cichlid diversity is intricately linked to the highly variable geologic and paleoclimatic history of this region. Greater than 10 Ma, the western arm of the East African rift system began to separate, thereby creating a series of rift basins that would come to contain several water bodies, including the extremely deep Lakes Tanganyika and Malawi. Uplifting associated with this rifting backponded many rivers and created the extremely large, but shallow Lake Victoria. Since their creation, the size, shape, and existence of these lakes have changed dramatically which has, in turn, significantly influenced the evolutionary history of the lakes' cichlids. This paper reviews the geologic history and paleoclimate of the East African Great Lakes and the impact of these forces on the region's endemic cichlid flocks. PMID:22888465

  5. Tectonic inheritance in the development of the Kivu - north Tanganyika rift segment of the East African Rift System: role of pre-existing structures of Precambrian to early Palaeozoic origin.

    NASA Astrophysics Data System (ADS)

    Delvaux, Damien; Fiama Bondo, Silvanos; Ganza Bamulezi, Gloire

    2017-04-01

    The present architecture of the junction between the Kivu rift basin and the north Tanganyika rift basin is that of a typical accommodation zone trough the Ruzizi depression. However, this structure appeared only late in the development of the Western branch of the East African Rift System and is the result of a strong control by pre-existing structures of Precambrian to early Palaeozoic origin. In the frame of a seismic hazard assessment of the Kivu rift region, we (Delvaux et al., 2016) constructed homogeneous geological, structural and neotectonic maps cross the five countries of this region, mapped the pre-rift, early rift and Late Quaternary faults and compiled the existing knowledge on thermal springs (assumed to be diagnostic of current tectonic activity along faults). We also produced also a new catalogue of historical and instrumental seismicity and defined the seismotectonic characteristics (stress field, depth of faulting) using published focal mechanism data. Rifting in this region started at about 11 Ma by initial doming and extensive fissural basaltic volcanism along normal faults sub-parallel to the axis of the future rift valley, as a consequence of the divergence between the Nubia and the Victoria plate. In a later stage, starting around 8-7 Ma, extension localized along a series of major border faults individualizing the subsiding tectonic basins from the uplifting rift shoulders, while lava evolved towards alkali basaltic composition until 2.6 Ma. During this stage, initial Kivu rift valley was extending linearly in a SSW direction, much further than its the actual termination at Bukavu, into the Mwenga-Kamituga graben, up to Namoya. The SW extremity of this graben was linked via a long oblique transfer zone to the central part of Lake Tanganyika, itself reactivating an older ductile-brittle shear zone. In the late Quaternary-early Holocene, volcanism migrated towards the center of the basin, with the development of the Virunga volcanic massif

  6. The genomic substrate for adaptive radiation in African cichlid fish.

    PubMed

    Brawand, David; Wagner, Catherine E; Li, Yang I; Malinsky, Milan; Keller, Irene; Fan, Shaohua; Simakov, Oleg; Ng, Alvin Y; Lim, Zhi Wei; Bezault, Etienne; Turner-Maier, Jason; Johnson, Jeremy; Alcazar, Rosa; Noh, Hyun Ji; Russell, Pamela; Aken, Bronwen; Alföldi, Jessica; Amemiya, Chris; Azzouzi, Naoual; Baroiller, Jean-François; Barloy-Hubler, Frederique; Berlin, Aaron; Bloomquist, Ryan; Carleton, Karen L; Conte, Matthew A; D'Cotta, Helena; Eshel, Orly; Gaffney, Leslie; Galibert, Francis; Gante, Hugo F; Gnerre, Sante; Greuter, Lucie; Guyon, Richard; Haddad, Natalie S; Haerty, Wilfried; Harris, Rayna M; Hofmann, Hans A; Hourlier, Thibaut; Hulata, Gideon; Jaffe, David B; Lara, Marcia; Lee, Alison P; MacCallum, Iain; Mwaiko, Salome; Nikaido, Masato; Nishihara, Hidenori; Ozouf-Costaz, Catherine; Penman, David J; Przybylski, Dariusz; Rakotomanga, Michaelle; Renn, Suzy C P; Ribeiro, Filipe J; Ron, Micha; Salzburger, Walter; Sanchez-Pulido, Luis; Santos, M Emilia; Searle, Steve; Sharpe, Ted; Swofford, Ross; Tan, Frederick J; Williams, Louise; Young, Sarah; Yin, Shuangye; Okada, Norihiro; Kocher, Thomas D; Miska, Eric A; Lander, Eric S; Venkatesh, Byrappa; Fernald, Russell D; Meyer, Axel; Ponting, Chris P; Streelman, J Todd; Lindblad-Toh, Kerstin; Seehausen, Ole; Di Palma, Federica

    2014-09-18

    Cichlid fishes are famous for large, diverse and replicated adaptive radiations in the Great Lakes of East Africa. To understand the molecular mechanisms underlying cichlid phenotypic diversity, we sequenced the genomes and transcriptomes of five lineages of African cichlids: the Nile tilapia (Oreochromis niloticus), an ancestral lineage with low diversity; and four members of the East African lineage: Neolamprologus brichardi/pulcher (older radiation, Lake Tanganyika), Metriaclima zebra (recent radiation, Lake Malawi), Pundamilia nyererei (very recent radiation, Lake Victoria), and Astatotilapia burtoni (riverine species around Lake Tanganyika). We found an excess of gene duplications in the East African lineage compared to tilapia and other teleosts, an abundance of non-coding element divergence, accelerated coding sequence evolution, expression divergence associated with transposable element insertions, and regulation by novel microRNAs. In addition, we analysed sequence data from sixty individuals representing six closely related species from Lake Victoria, and show genome-wide diversifying selection on coding and regulatory variants, some of which were recruited from ancient polymorphisms. We conclude that a number of molecular mechanisms shaped East African cichlid genomes, and that amassing of standing variation during periods of relaxed purifying selection may have been important in facilitating subsequent evolutionary diversification.

  7. Scientific Drilling at Lake Tanganyika, Africa: A Transformative Record for Understanding Evolution in Isolation and the Biological History of the African Continent, University of Basel, 6-8 June 2016

    NASA Astrophysics Data System (ADS)

    Cohen, Andrew S.; Salzburger, Walter

    2017-05-01

    We report on the outcomes of a workshop held to discuss evolutionary biology, paleobiology and paleoecology questions that could be addressed by a scientific drilling project at Lake Tanganyika, the largest, deepest and oldest of the African Rift Valley lakes. Lake Tanganyika is of special significance to evolutionary biologists as it harbors one of the most spectacular endemic faunas of any lake on earth, with hundreds of unique species of fish, molluscs, crustaceans and other organisms that have evolved over the lake's long history. Most of these groups of organisms are known from fossils in short cores from the lake, raising the possibility that both body fossil and ancient DNA records might be recovered from long drill cores. The lake's sedimentary record could also provide a record of African terrestrial ecosystem history since the late Miocene. This 3-day workshop brought together biological and geological specialists on the lake and its surroundings to prioritize paleobiological, ecological and microbiological objectives that could ultimately be incorporated into an overall drilling plan for Lake Tanganyika and to consider how biological objectives can effectively be integrated into the paleoclimate and tectonics objectives of a Lake Tanganyika drilling project already considered in prior workshops.

  8. The genomic substrate for adaptive radiation in African cichlid fish

    PubMed Central

    Malinsky, Milan; Keller, Irene; Fan, Shaohua; Simakov, Oleg; Ng, Alvin Y.; Lim, Zhi Wei; Bezault, Etienne; Turner-Maier, Jason; Johnson, Jeremy; Alcazar, Rosa; Noh, Hyun Ji; Russell, Pamela; Aken, Bronwen; Alföldi, Jessica; Amemiya, Chris; Azzouzi, Naoual; Baroiller, Jean-François; Barloy-Hubler, Frederique; Berlin, Aaron; Bloomquist, Ryan; Carleton, Karen L.; Conte, Matthew A.; D'Cotta, Helena; Eshel, Orly; Gaffney, Leslie; Galibert, Francis; Gante, Hugo F.; Gnerre, Sante; Greuter, Lucie; Guyon, Richard; Haddad, Natalie S.; Haerty, Wilfried; Harris, Rayna M.; Hofmann, Hans A.; Hourlier, Thibaut; Hulata, Gideon; Jaffe, David B.; Lara, Marcia; Lee, Alison P.; MacCallum, Iain; Mwaiko, Salome; Nikaido, Masato; Nishihara, Hidenori; Ozouf-Costaz, Catherine; Penman, David J.; Przybylski, Dariusz; Rakotomanga, Michaelle; Renn, Suzy C. P.; Ribeiro, Filipe J.; Ron, Micha; Salzburger, Walter; Sanchez-Pulido, Luis; Santos, M. Emilia; Searle, Steve; Sharpe, Ted; Swofford, Ross; Tan, Frederick J.; Williams, Louise; Young, Sarah; Yin, Shuangye; Okada, Norihiro; Kocher, Thomas D.; Miska, Eric A.; Lander, Eric S.; Venkatesh, Byrappa; Fernald, Russell D.; Meyer, Axel; Ponting, Chris P.; Streelman, J. Todd; Lindblad-Toh, Kerstin; Seehausen, Ole; Di Palma, Federica

    2015-01-01

    Cichlid fishes are famous for large, diverse and replicated adaptive radiations in the Great Lakes of East Africa. To understand the molecular mechanisms underlying cichlid phenotypic diversity, we sequenced the genomes and transcriptomes of five lineages of African cichlids: the Nile tilapia (Oreochromis niloticus), an ancestral lineage with low diversity; and four members of the East African lineage: Neolamprologus brichardi/pulcher (older radiation, Lake Tanganyika), Metriaclima zebra (recent radiation, Lake Malawi), Pundamilia nyererei (very recent radiation, Lake Victoria), and Astatotilapia burtoni (riverine species around Lake Tanganyika). We found an excess of gene duplications in the East African lineage compared to tilapia and other teleosts, an abundance of non-coding element divergence, accelerated coding sequence evolution, expression divergence associated with transposable element insertions, and regulation by novel microRNAs. In addition, we analysed sequence data from sixty individuals representing six closely related species from Lake Victoria, and show genome-wide diversifying selection on coding and regulatory variants, some of which were recruited from ancient polymorphisms. We conclude that a number of molecular mechanisms shaped East African cichlid genomes, and that amassing of standing variation during periods of relaxed purifying selection may have been important in facilitating subsequent evolutionary diversification. PMID:25186727

  9. Evolutionary history of Lake Tanganyika's scale-eating cichlid fishes.

    PubMed

    Koblmüller, Stephan; Egger, Bernd; Sturmbauer, Christian; Sefc, Kristina M

    2007-09-01

    Although Lake Tanganyika is not the most species-rich of the Great East African Lakes it comprises by far the greatest diversity of cichlid fishes in terms of morphology, ecology, and breeding styles. Our study focuses on the Tanganyikan cichlid tribe Perissodini, which exhibits one of the most peculiar feeding strategies found in cichlids-scale-eating. Their evolutionary history was reconstructed from 1416 bp DNA sequence of two mitochondrial genes (ND2 and partial control region) and from 612 AFLP markers. We confirm the inclusion of the zooplanktivorous genus Haplotaxodon in the tribe Perissodini, and species status of Haplotaxodon trifasciatus. Within the Perissodini, the major lineages emerged within a short period roughly 1.5-2 MYA, which makes their radiation slightly younger than that of other Tanganyikan cichlid tribes. Most scale-eaters evolved in deep-water habitat, perhaps associated with the previously documented radiations of other deep-water dwelling cichlid lineages, and colonized the shallow habitat only recently.

  10. Investigating “mass hysteria” in early postcolonial Uganda: Benjamin H. Kagwa, East African psychiatry, and the Gisu

    PubMed Central

    Pringle, Yolana

    2016-01-01

    In the early 1960s, medical officers and administrators began to receive reports of what was being described as “mass madness” and “mass hysteria” in Tanganyika (now Tanzania) and Uganda. Each epidemic reportedly affected between 300 and 600 people and, coming in the wake of independence from colonial rule, caused considerable concern. One of the practitioners sent to investigate was Benjamin H. Kagwa, a Ugandan-born psychiatrist whose report represents the first investigation by an African psychiatrist in East Africa. This article uses Kagwa’s investigation to explore some of the difficulties facing East Africa’s first generation of psychiatrists as they took over responsibility for psychiatry. During this period, psychiatrists worked in an intellectual climate that was both attempting to deal with the legacy of colonial racism, and which placed faith in African psychiatrists to reveal more culturally sensitive insights into African psychopathology. The epidemics were the first major challenge for psychiatrists such as Kagwa precisely because they appeared to confirm what colonial psychiatrists had been warning for years—that westernization would eventually result in mass mental instability. As this article argues, however, Kagwa was never fully able to free himself from the practices and assumptions that had pervaded his discipline under colonial rule. His analysis of the epidemics as a “mental conflict” fit into a much longer tradition of psychiatry in East Africa, and stood starkly against the explanations of the local community. PMID:24191308

  11. Phylogenetic relationships among East African haplochromine fish as revealed by short interspersed elements (SINEs).

    PubMed

    Terai, Yohey; Takezaki, Naoko; Mayer, Werner E; Tichy, Herbert; Takahata, Naoyuki; Klein, Jan; Okada, Norihiro

    2004-01-01

    Genomic DNA libraries were prepared from two endemic species of Lake Victoria haplochromine (cichlid) fish and used to isolate and characterize a set of short interspersed elements (SINEs). The distribution and sequences of the SINEs were used to infer phylogenetic relationships among East African haplochromines. The SINE-based classification divides the fish into four groups, which, in order of their divergence from a stem lineage, are the endemic Lake Tanganyika flock (group 1); fish of the nonendemic, monotypic, widely distributed genus Astatoreochromis (group 2); the endemic Lake Malawi flock (group 3); and group 4, which contains fish from widely dispersed East African localities including Lakes Victoria, Edward, George, Albert, and Rukwa, as well as many rivers. The group 4 haplochromines are characterized by a subset of polymorphic SINEs, each of which is present in some individuals and absent in others of the same population at a given locality, the same morphologically defined species, and the same mtDNA-defined haplogroup. SINE-defined group 4 contains six of the seven previously described mtDNA haplogroups. One of the polymorphic SINEs appears to be fixed in the endemic Lake Victoria flock; four others display the presence-or-absence polymorphism within the species of this flock. These findings have implications for the origin of Lake Victoria cichlids and for their founding population sizes.

  12. East African Rift Valley, Kenya

    NASA Technical Reports Server (NTRS)

    1990-01-01

    This rare, cloud free view of the East African Rift Valley, Kenya (1.5N, 35.5E) shows a clear view of the Turkwell River Valley, an offshoot of the African REift System. The East African Rift is part of a vast plate fracture which extends from southern Turkey, through the Red Sea, East Africa and into Mozambique. Dark green patches of forests are seen along the rift margin and tea plantations occupy the cooler higher ground.

  13. Acute schistosomiasis in European students returning from fieldwork at Lake Tanganyika, Tanzania.

    PubMed

    Steiner, Florian; Ignatius, Ralf; Friedrich-Jaenicke, Barbara; Dieckmann, Sebastian; Harms, Gundel; Poppert, Sven; Mockenhaupt, Frank P

    2013-01-01

    Schistosomiasis is common in many African regions and poses a risk for travelers and the local population. So far, schistosomiasis in travelers or expatriates returning from the Tanzanian bank of Lake Tanganyika has not been reported. We report a group of students who sought treatment with signs of acute schistosomiasis after having returned from Lake Tanganyika, Tanzania. Information as to travel and exposure as well as clinical and laboratory data were collected. Schistosomiasis was diagnosed in 8 of 16 students from Berlin, Germany, who had returned from a 2- to 3-month stay of fieldwork in Kigoma District at Lake Tanganyika, Tanzania. All 16 students reported frequent freshwater exposure at the lake. Six patients showed signs of acute schistosomiasis and had fever, and some of them also had cough, weakness, headache, or abdominal pain. Eosinophilia was present in five of the six symptomatic individuals. Notably, two serologically enzyme-linked immunosorbent assay (ELISA)-positive individuals did not report or present with symptoms or abnormal laboratory parameters. Schistosoma mansoni eggs were found in one symptomatic and one asymptomatic individual each. Blood and stool samples from the other eight individuals who were equally exposed to freshwater yielded negative results. This is the first report of an outbreak of acute schistosomiasis imported from the Tanzanian shore of Lake Tanganyika and highlights the risk for travelers and the local population of acquiring the infection in that part of Tanzania. It provides arguments for routine serological screening for schistosomiasis in individuals who had prior freshwater contact in endemic areas, irrespective of symptoms or other laboratory findings. © 2013 International Society of Travel Medicine.

  14. Paleolimnology of Lake Tanganyika, East Africa, over the past 100 k yr

    USGS Publications Warehouse

    Scholz, C.A.; King, J.W.; Ellis, G.S.; Swart, Peter K.; Stager, J.C.; Colman, Steven M.

    2003-01-01

    New sediment core data from a unique slow-sedimentation rate site in Lake Tanganyika contain a much longer and continuous record of limnological response to climate change than have been previously observed in equatorial regions of central Africa. The new core site was first located through an extensive seismic reflection survey over the Kavala Island Ridge (KIR), a sedimented basement high that separates the Kigoma and Kalemie Basins in Lake Tanganyika. Proxy analyses of paleoclimate response carried out on core T97-52V include paleomagnetic and index properties, TOC and isotopic analyses of organic carbon, and diatom and biogenic silica analyses. A robust age model based on 11 radiocarbon (AMS) dates indicates a linear, continuous sedimentation rate nearly an order of magnitude slower here compared to other core sites around the lake. This age model indicates continuous sedimentation over the past 79 k yr, and a basal age in excess of 100 k yr. The results of the proxy analyses for the past ??? 20 k yr are comparable to previous studies focused on that interval in Lake Tanganyika, and show that the lake was about 350 m lower than present at the Last Glacial Maximum (LGM). Repetitive peaks in TOC and corresponding drops in ??13C over the past 79 k yr indicate periods of high productivity and mixing above the T97-52V core site, probably due to cooler and perhaps windier conditions. From ??? 80 through ??? 58 k yr the ??13C values are relatively negative (-26 to -28???) suggesting predominance of algal contributions to bottom sediments at this site during this time. Following this interval there is a shift to higher values of ??13C, indicating a possible shift to C-4 pathway-dominated grassland-type vegetation in the catchment, and indicating cooler, dryer conditions from ??? 55 k yr through the LGM. Two seismic sequence boundaries are observed at shallow stratigraphic levels in the seismic reflection data, and the upper boundary correlates to a major discontinuity

  15. Assessing the contributions of East African and West Pacific warming to the 2014 boreal spring East African drought

    USGS Publications Warehouse

    Funk, Christopher C.; Shukla, Shraddhanand; Hoell, Andrew; Livneh, Ben

    2015-01-01

    Anthropogenic warming contributed to the 2014 East African drought by increasing East African and west Pacific temperatures, and increasing the gradient between standardized western and central Pacific SST causing reduced rainfall, evapotranspiration, and soil moisture.

  16. Modeling the Sedimentary Infill of Lakes in the East African Rift: A Case Study of Multiple versus Single Rift Basin Segments

    NASA Astrophysics Data System (ADS)

    Zhang, C.; Scholz, C. A.

    2016-12-01

    The sedimentary basins in the East African Rift are considered excellent modern examples for investigating sedimentary infilling and evolution of extensional systems. Some lakes in the western branch of the rift have formed within single-segment systems, and include Lake Albert and Lake Edward. The largest and oldest lakes developed within multi-segment systems, and these include Lake Tanganyika and Lake Malawi. This research aims to explore processes of erosion and sedimentary infilling of the catchment area in single-segment rift (SSR) and multi-segment rift (MSR) systems. We consider different conditions of regional precipitation and evaporation, and assess the resulting facies architecture through forward modeling, using state-of-the-art commercial basin modeling software. Dionisos is a three-dimensional numerical stratigraphic forward modeling software program, which simulates basin-scale sediment transport based on empirical water- and gravity-driven diffusion equations. It was classically used to quantify the sedimentary architecture and basin infilling of both marine siliciclastic and carbonate environments. However, we apply this approach to continental rift basin environments. In this research, two scenarios are developed, one for a MSR and the other for a SSR. The modeled systems simulate the ratio of drainage area and lake surface area observed in modern Lake Tanganyika and Lake Albert, which are examples of MSRs and SSRs, respectively. The main parameters, such as maximum subsidence rate, water- and gravity-driven diffusion coefficients, rainfall, and evaporation, are approximated using these real-world examples. The results of 5 million year model runs with 50,000 year time steps show that MSRs are characterized by a deep water lake with relatively modest sediment accumulation, while the SSRs are characterized by a nearly overfilled lake with shallow water depths and thick sediment accumulation. The preliminary modeling results conform to the features

  17. Paleolimnological investigations of anthropogenic environmental change in Lake Tanganyika: I. An introduction to the project

    USGS Publications Warehouse

    Cohen, A.S.; Palacios-Fest, M. R.; McGill, J.; Swarzenski, P.W.; Verschuren, D.; Sinyinza, R.; Songori, T.; Kakagozo, B.; Syampila, M.; O'Reilly, C. M.; Alin, S.R.

    2005-01-01

    We investigated paleolimnological records from a series of river deltas around the northeastern rim of Lake Tanganyika, East Africa (Tanzania and Burundi) in order to understand the history of anthropogenic activity in the lake's catchment over the last several centuries, and to determine the impact of these activities on the biodiversity of littoral and sublittoral lake communities. Sediment pollution caused by increased rates of soil erosion in deforested watersheds has caused significant changes in aquatic communities along much of the lake's shoreline. We analyzed the effects of sediment discharge on biodiversity around six deltas or delta complexes on the east coast of Lake Tanganyika: the Lubulungu River delta, Kabesi River delta, Nyasanga/Kahama River deltas, and Mwamgongo River delta in Tanzania; and the Nyamuseni River delta and Karonge/Kirasa River deltas in Burundi. Collectively, these deltas and their associated rivers were chosen to represent a spectrum of drainage-basin sizes and disturbance levels. By comparing deltas that are similar in watershed attributes (other than disturbance levels), our goal was to explore a series of historical "experiments" at the watershed scale, with which we could more clearly evaluate hypotheses of land use or other effects on nearshore ecosystems. Here we discuss these deltas, their geologic and physiographic characteristics, and the field procedures used for coring and sampling the deltas, and various indicators of anthropogenic impact. ?? Springer 2005.

  18. New Progress on Radiocarbon Geochronology in Southern Lake Tanganyika (East Africa)

    NASA Astrophysics Data System (ADS)

    McGlue, M. M.; Soreghan, M. J.

    2017-12-01

    Our limnogeological research in Lake Tanganyika focuses on elucidating the patterns of sediment accumulation on deepwater horsts, outer platforms, and littoral environments in the lake's southern basin ( 6-8°S latitude). Here, we present new radiocarbon (14C) dates from high-quality surface sediment cores, in order to make comparisons with previously published age models, to address the presence and spatiotemporal variability of a reservoir effect, and to constrain sedimentation rates and facies at sites that may be important targets for future scientific drilling. Plant macrofossils are rare in deepwater sediment cores, so charcoal and bulk organic matter have been the primary materials used for dating. On the Kavala Island Ridge (KIR) horst, initial core descriptions revealed variations in laminae presence, thickness, and chemistry. Sediment cores from the KIR at 172m water depth consist of thickly laminated diatom oozes. Charcoal from the bases of these cores returned median ages of 2.1-2.2 cal ka, suggesting linear accumulation rates on the order of 0.51 mm/yr. By contrast, a core from 420 m water depth on the KIR exhibited very thin laminations and diatom layers were much less prominent. Charcoal at the base of this core produced a median age of 8.1 cal ka, suggesting a linear accumulation rate of 0.11 mm/yr. These initial results suggest that sedimentation rates may vary considerably over sublacustrine horst blocks. We will test this initial discovery with additional sedimentation rate information from the Kalya and Nitiri horsts. In addition, we report new 14C dates made on both dead and live-collected shells of the endemic gastropod Neothauma tanganyicense. These shells form vast accumulations along shallow-water platforms of the lake and form an important substrate for a number of other endemic species. The discovery of living snails in southern Lake Tanganyika may allow for the development of a species-specific reservoir correction. A limited N

  19. Mating and Parental Care in Lake Tanganyika's Cichlids

    PubMed Central

    Sefc, Kristina M.

    2011-01-01

    Cichlid fishes of Lake Tanganyika display a variety of mating and parental care behaviors, including polygamous and monogamous mouthbrooding and substrate breeding, cooperative breeding, as well as various alternative reproductive tactics such as sneaking and piracy. Moreover, reproductive behaviors sometimes vary within species both in space and in time. Here, I survey reports on mating and parenting behaviors of Lake Tanganyika cichlid species and address the evolution of mating and parental care patterns and sexual dimorphism. Notes on measures of sexual selection intensity and the difficulties of defining mating systems and estimating selection intensities at species level conclude the essay. PMID:21822482

  20. Infection with Echinostoma sp. in a group of travellers to Lake Tanganyika, Tanzania, in January 2017.

    PubMed

    Chunge, Ruth N; Chunge, Charles N

    2017-09-01

    A small group of travellers became infected with Echinostoma sp. after ingesting raw fish which they caught in Lake Tanganyika, Tanzania, in January 2017. The infection was diagnosed by finding the characteristic eggs in stool samples collected over a 2-week period following their return to Kenya. Echinostoma is a genus of parasitic flukes normally known to infect humans in southeast Asia and the Far East. This appears to be the first report of echinostomiasis in East Africa which can be attributed clearly to ingestion of locally caught raw fish. © International Society of Travel Medicine, 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

  1. Seismic hazard of the Kivu rift (western branch, East African Rift system): new neotectonic map and seismotectonic zonation model

    NASA Astrophysics Data System (ADS)

    Delvaux, Damien; Mulumba, Jean-Luc; Sebagenzi Mwene Ntabwoba, Stanislas; Fiama Bondo, Silvanos; Kervyn, François; Havenith, Hans-Balder

    2017-04-01

    The first detailed probabilistic seismic hazard assessment has been performed for the Kivu and northern Tanganyika rift region in Central Africa. This region, which forms the central part of the Western Rift Branch, is one of the most seismically active part of the East African rift system. It was already integrated in large scale seismic hazard assessments, but here we defined a finer zonation model with 7 different zones representing the lateral variation of the geological and geophysical setting across the region. In order to build the new zonation model, we compiled homogeneous cross-border geological, neotectonic and sismotectonic maps over the central part of East D.R. Congo, SW Uganda, Rwanda, Burundi and NW Tanzania and defined a new neotectonic sheme. The seismic risk assessment is based on a new earthquake catalogue, compiled on the basis of various local and global earthquake catalogues. The use of macroseismic epicenters determined from felt earthquakes allowed to extend the time-range back to the beginning of the 20th century, spanning 126 years, with 1068 events. The magnitudes have been homogenized to Mw and aftershocks removed. From this initial catalogue, a catalogue of 359 events from 1956 to 2015 and with M > 4.4 has been extracted for the seismic hazard assessment. The seismotectonic zonation includes 7 seismic source areas that have been defined on the basis of the regional geological structure, neotectonic fault systems, basin architecture and distribution of thermal springs and earthquake epicenters. The Gutenberg-Richter seismic hazard parameters were determined using both the least square linear fit and the maximum likelihood method (Kijko & Smit aue program). Seismic hazard maps have been computed with the Crisis 2012 software using 3 different attenuation laws. We obtained higher PGA values (475 years return period) for the Kivu rift region than the previous estimates (Delvaux et al., 2016). They vary laterally in function of the tectonic

  2. IDEAL Symposium on the East African Lakes

    NASA Astrophysics Data System (ADS)

    Johnson, T. C.; Kelts, K.; Lehman, J. T.; Wuest, A.

    A vast array of interdisciplinary problems presented by the African Great Lakes were highlighted at the International Symposium on the Limnology, Climatology and Paleoclimatology of the East African Lakes, organized by the International Decade for the East African Lakes (IDEAL) February 17-21 in Jinja, Uganda. Approximately 125 scientists attended from North America, Europe, Africa, and New Zealand. Jinja is located on the northern shore of Lake Victoria at the head-waters of the Nile and is the site of the host institution for the symposium, the Uganda Freshwater Fisheries Research Organization (UFFRO). The conveners of the symposium were Tom Johnson of Duke University, George Kitaka of UNESCO-ROSTA, and Eric Odada of the University of Nairobi.

  3. East African cheetahs: evidence for two population bottlenecks?

    PubMed Central

    O'Brien, S J; Wildt, D E; Bush, M; Caro, T M; FitzGibbon, C; Aggundey, I; Leakey, R E

    1987-01-01

    A combined population genetic and reproductive analysis was undertaken to compare free-ranging cheetahs from east Africa (Acinonyx jubatus raineyi) with the genetically impoverished and reproductively impaired south African subspecies (Acinonyx jubatus jubatus). Like that of their south African counterparts, the quality of semen specimens from east African cheetahs was poor, with a low concentration of spermatozoa (25.3 X 10(6) per ejaculate) and a high incidence of morphological abnormalities (79%). From an electrophoretic survey of the products of 49 genetic loci in A. jubatus raineyi, two allozyme polymorphisms were detected; one of these, for a nonspecific esterase, shows an allele that is rare (less than 1% incidence) in south African specimens. Estimates of polymorphism (2-4%) and average heterozygosity (0.0004-0.014) affirm the cheetah as the least genetically variable felid species. The genetic distance between south and east African cheetahs was low (0.004), suggesting that the development of genetic uniformity preceded the recent geographic isolation of the subspecies. We propose that at least two population bottlenecks followed by inbreeding produced the modern cheetah species. The first and most extreme was ancient, possibly late Pleistocene (circa 10,000 years ago); the second was more recent (within the last century) and led to the south African populations. PMID:3467370

  4. Infestation and Pathological Alterations by Ergasilus sarsi (Copepoda) on the Tanganyika Killifish from Africa

    PubMed Central

    Kilian, Esmari; Avenant-Oldewage, Annemariè

    2013-01-01

    A total of 204 Ergasilus sarsi, a copepod, were collected from Tanganyika Killifish Lamprichthys tanganicanus in Lake Tanganyika during March 2010. The prevalence was 86.40%, the mean intensity was 7.56, and the mean abundance was 6.38. Only 27 of the fish were infested, and the highest infestation on one fish was 29. Proliferation of mucus cells and lamellar fusion occurred. Haemorrhage due to blood vessel compression was noted. This is the first record of E. sarsi from Tanganyika Killifish. This study is also the first to provide a description of the pathological alterations caused by E. sarsi. PMID:24341764

  5. Understanding the health beliefs and practices of East African refugees.

    PubMed

    Simmelink, Jennifer; Lightfoot, Elizabeth; Dube, Amano; Blevins, Jennifer; Lum, Terry

    2013-03-01

    To explore East African refugees' perceptions, ideas, and beliefs about health and health care, as well as the ways in which health information is shared within their communities. This study consisted of 2 focus groups with a total of 15 participants, including East African community leaders and health professionals. East African refugees in the United States have strong cultural, religious, and traditional health practices that shape their health behavior and influence their interactions with Western health care systems. Health care providers who understand refugees' beliefs about health may achieve more compliance with refugee patients.

  6. Seismic hazard assessment of the Kivu rift segment based on a new seismotectonic zonation model (western branch, East African Rift system)

    NASA Astrophysics Data System (ADS)

    Delvaux, Damien; Mulumba, Jean-Luc; Sebagenzi, Mwene Ntabwoba Stanislas; Bondo, Silvanos Fiama; Kervyn, François; Havenith, Hans-Balder

    2017-10-01

    In the frame of the Belgian GeoRisCA multi-risk assessment project focusing on the Kivu and northern Tanganyika rift region in Central Africa, a new probabilistic seismic hazard assessment has been performed for the Kivu rift segment in the central part of the western branch of the East African rift system. As the geological and tectonic setting of this region is incompletely known, especially the part lying in the Democratic Republic of the Congo, we compiled homogeneous cross-border tectonic and neotectonic maps. The seismic risk assessment is based on a new earthquake catalogue based on the ISC reviewed earthquake catalogue and supplemented by other local catalogues and new macroseismic epicenter data spanning 126 years, with 1068 events. The magnitudes have been homogenized to Mw and aftershocks removed. The final catalogue used for the seismic hazard assessment spans 60 years, from 1955 to 2015, with 359 events and a magnitude of completeness of 4.4. The seismotectonic zonation into 7 seismic source areas was done on the basis of the regional geological structure, neotectonic fault systems, basin architecture and distribution of thermal springs and earthquake epicenters. The Gutenberg-Richter seismic hazard parameters were determined by the least square linear fit and the maximum likelihood method. Seismic hazard maps have been computed using existing attenuation laws with the Crisis 2012 software. We obtained higher PGA values (475 years return period) for the Kivu rift region than the previous estimates. They also vary laterally in function of the tectonic setting, with the lowest value in the volcanically active Virunga - Rutshuru zone, highest in the currently non-volcanic parts of Lake Kivu, Rusizi valley and North Tanganyika rift zone, and intermediate in the regions flanking the axial rift zone.

  7. Model, Proxy and Isotopic Perspectives on the East African Humid Period

    NASA Technical Reports Server (NTRS)

    Tierney, Jessica E.; Lewis, Sophie C.; Cook, Benjamin I.; LeGrande, Allegra N.; Schmidt, Gavin A.

    2011-01-01

    Both North and East Africa experienced more humid conditions during the early and mid-Holocene epoch (11,000-5000yr BP; 11-5 ka) relative to today. The North African Humid Period has been a major focus of paleoclimatic study, and represents a response of the hydrological cycle to the increase in boreal summer insolation and associated ocean, atmosphere and land surface feedbacks. Meanwhile, the mechanisms that caused the coeval East African Humid Period are poorly understood. Here, we use results from isotopeenabled coupled climate modeling experiments to investigate the cause of the East African Humid Period. The modeling results are interpreted alongside proxy records of both water balance and the isotopic composition of rainfall. Our simulations show that the orbitally-induced increase in dry season precipitation and the subsequent reduction in precipitation seasonality can explain the East African Humid Period, and this scenario agrees well with regional lake level and pollen paleoclimate data. Changes in zonal moisture flux from both the Atlantic and Indian Ocean account for the simulated increase in precipitation from June through November. Isotopic paleoclimate data and simulated changes in moisture source demonstrate that the western East African Rift Valley in particular experienced more humid conditions due to the influx of Atlantic moisture and enhanced convergence along the Congo Air Boundary. Our study demonstrates that zonal changes in moisture advection are an important determinant of climate variability in the East African region.

  8. East African ROAD

    NASA Astrophysics Data System (ADS)

    Tekle, Kelali

    2016-10-01

    In the developing world astronomy had been treated as the science of elites. As a result of this overwhelming perception, astronomy compared with other applied sciences has got less attention and its role in development has been insignificant. However, the IAU General Assembly decision in 2009 opened new opportunity for countries and professionals to deeply look into Astronomy and its role in development. Then, the subsequent establishment of regional offices in the developing world is helping countries to integrate astronomy with other earth and space based sciences so as to progressively promote its scientific and development importance. Gradually nations have come to know that space is the frontier of tomorrow and the urgency of preeminence on space frontier starts at primary school and ascends to tertiary education. For this to happen, member nations in east African region have placed STEM education at the center of their education system. For instance, Ethiopian has changed University enrollment strategy to be in favor of science and engineering subjects, i.e. every year seventy percent of new University entrants join science and engineering fields while thirty percent social science and humanities. Such bold actions truly promote astronomy to be conceived as gateway to science and technology. To promote the concept of astronomy for development the East African regional office has actually aligned it activities to be in line with the focus areas identified by the IAU strategy (2010 to 2020).

  9. Assessment of conventional oil resources of the East African Rift Province, East Africa, 2016

    USGS Publications Warehouse

    Brownfield, Michael E.; Schenk, Christopher J.; Klett, Timothy R.; Mercier, Tracey J.; Gaswirth, Stephanie B.; Marra, Kristen R.; Finn, Thomas M.; Le, Phuong A.; Leathers-Miller, Heidi M.

    2017-03-27

    Using a geology-based assessment methodology, the U.S. Geological Survey estimated undiscovered, technically recoverable mean conventional resources of 13.4 billion barrels of oil and 4.6 trillion cubic feet of gas in the East African Rift Province of east Africa.

  10. Successes and Challenges in East African Conservation Education

    ERIC Educational Resources Information Center

    Johnson-Pynn, Julie S.; Johnson, Laura R.

    2005-01-01

    Environmental education (EE) programs that include service-learning components have great potential to positively impact East African youth, their communities, and their ecology. This exploratory study describes 2 programs in East Africa, The Jane Goodall Institute's Roots & Shoots (R&S) and Wildlife Clubs of Uganda (WCU). The authors…

  11. Century-Long Warming Trends in the Upper Water Column of Lake Tanganyika.

    PubMed

    Kraemer, Benjamin M; Hook, Simon; Huttula, Timo; Kotilainen, Pekka; O'Reilly, Catherine M; Peltonen, Anu; Plisnier, Pierre-Denis; Sarvala, Jouko; Tamatamah, Rashid; Vadeboncoeur, Yvonne; Wehrli, Bernhard; McIntyre, Peter B

    2015-01-01

    Lake Tanganyika, the deepest and most voluminous lake in Africa, has warmed over the last century in response to climate change. Separate analyses of surface warming rates estimated from in situ instruments, satellites, and a paleolimnological temperature proxy (TEX86) disagree, leaving uncertainty about the thermal sensitivity of Lake Tanganyika to climate change. Here, we use a comprehensive database of in situ temperature data from the top 100 meters of the water column that span the lake's seasonal range and lateral extent to demonstrate that long-term temperature trends in Lake Tanganyika depend strongly on depth, season, and latitude. The observed spatiotemporal variation in surface warming rates accounts for small differences between warming rate estimates from in situ instruments and satellite data. However, after accounting for spatiotemporal variation in temperature and warming rates, the TEX86 paleolimnological proxy yields lower surface temperatures (1.46 °C lower on average) and faster warming rates (by a factor of three) than in situ measurements. Based on the ecology of Thaumarchaeota (the microbes whose biomolecules are involved with generating the TEX86 proxy), we offer a reinterpretation of the TEX86 data from Lake Tanganyika as the temperature of the low-oxygen zone, rather than of the lake surface temperature as has been suggested previously. Our analyses provide a thorough accounting of spatiotemporal variation in warming rates, offering strong evidence that thermal and ecological shifts observed in this massive tropical lake over the last century are robust and in step with global climate change.

  12. Century-Long Warming Trends in the Upper Water Column of Lake Tanganyika

    PubMed Central

    Kraemer, Benjamin M.; Hook, Simon; Huttula, Timo; Kotilainen, Pekka; O’Reilly, Catherine M.; Peltonen, Anu; Plisnier, Pierre-Denis; Sarvala, Jouko; Tamatamah, Rashid; Vadeboncoeur, Yvonne; Wehrli, Bernhard; McIntyre, Peter B.

    2015-01-01

    Lake Tanganyika, the deepest and most voluminous lake in Africa, has warmed over the last century in response to climate change. Separate analyses of surface warming rates estimated from in situ instruments, satellites, and a paleolimnological temperature proxy (TEX86) disagree, leaving uncertainty about the thermal sensitivity of Lake Tanganyika to climate change. Here, we use a comprehensive database of in situ temperature data from the top 100 meters of the water column that span the lake’s seasonal range and lateral extent to demonstrate that long-term temperature trends in Lake Tanganyika depend strongly on depth, season, and latitude. The observed spatiotemporal variation in surface warming rates accounts for small differences between warming rate estimates from in situ instruments and satellite data. However, after accounting for spatiotemporal variation in temperature and warming rates, the TEX86 paleolimnological proxy yields lower surface temperatures (1.46 °C lower on average) and faster warming rates (by a factor of three) than in situ measurements. Based on the ecology of Thaumarchaeota (the microbes whose biomolecules are involved with generating the TEX86 proxy), we offer a reinterpretation of the TEX86 data from Lake Tanganyika as the temperature of the low-oxygen zone, rather than of the lake surface temperature as has been suggested previously. Our analyses provide a thorough accounting of spatiotemporal variation in warming rates, offering strong evidence that thermal and ecological shifts observed in this massive tropical lake over the last century are robust and in step with global climate change. PMID:26147964

  13. Fishing with bed nets on Lake Tanganyika: a randomized survey.

    PubMed

    McLean, Kate A; Byanaku, Aisha; Kubikonse, Augustine; Tshowe, Vincent; Katensi, Said; Lehman, Amy G

    2014-10-07

    Malaria is among the most common causes of death along Lake Tanganyika, a problem which many aid organizations have attempted to combat through the distribution of free mosquito bed nets to high-risk communities. The Lake Tanganyika Floating Health Clinic (LTFHC), a health-based non-governmental organization (NGO), has observed residents of the Lake Tanganyika basin using bed nets to fish small fry near the shoreline, despite a series of laws that prohibit bed net use and other fine-gauge nets for fishing, implemented to protect the near-shore fish ecology. The LTFHC sought to quantify the sources of bed nets and whether they were being used for fishing. The LTFHC conducted a survey of seven lakeside villages in Lagosa Ward, Tanzania. The government has divided each village into two to six pre-existing geographic sub-villages depending on population size. Seven households per sub-village were chosen at random for survey administration. The survey consisted of 23 questions regarding mosquito bed net practices, including the use of bed nets for fishing, as well as questions pertaining to any perceived changes to the fish supply. A total of 196 surveys were administered over a four-week period with a 100% response rate. Over 87% of households surveyed have used a mosquito bed net for fishing at some point. The majority of respondents reported receiving their bed net for free (96.4%), observing "many" residents of their village using bed nets for fishing (97.4%), and noticing a subjective decrease in the fish supply over time (64.9%). The findings of this study raise concerns that the use of free malaria bed nets for fishing is widespread along Lake Tanganyika, and that this dynamic will have an adverse effect on fish ecology. Further studies are indicated to fully define the scope of bed net misuse and the effects of alternative vector control strategies in water-based communities.

  14. Deciphering the role of fluids in early stage rifting from full moment tensor inversion of East African earthquakes

    NASA Astrophysics Data System (ADS)

    Oliva, S. J. C.; Ebinger, C. J.; Keir, D.; Shillington, D. J.; Chindandali, P. R. N.

    2016-12-01

    The East African Rift splits around the Archaean Tanzania craton into the magmatic Eastern branch and the mostly amagmatic Western branch, which continues south of the craton. Temporary seismic networks recently deployed in three rift sectors allow for comparison and insights into the early stages of rifting, including areas with lower crustal earthquakes. We analyze earthquakes with ML > 3.5 in the area recorded by CRAFTI (northern Tanzania/Kenya), TANGA (Tanganyika rift), and/or SEGMeNT (Malawi rift) networks. For events not well enclosed by these arrays, nearby permanent stations are used to improve azimuthal coverage when possible. We present source mechanisms as well as better-constrained source depth estimates from moment tensor inversion using Dreger and Ford TDMT algorithm (Dreger, 2003; Minson & Dreger, 2008). Data and synthetic waveforms are bandpass filtered between 0.02 to 0.10 Hz, or a narrower frequency band within this range, depending on lake noise, which can interfere strongly on the lower end of this frequency range. Results suggest local stress reorientations as well as significant dilatation components on some events within magmatic rift sectors. The implications of these results for crustal rheology and magmatic modification will be discussed in light of the growing complementary data sets from the three projects to inform our understanding of early rifting as a whole.

  15. Focal mechanisms and the stress regime in NE and SW Tanzania, East Africa

    NASA Astrophysics Data System (ADS)

    Brazier, Richard A.; Nyblade, Andrew A.; Florentin, Juliette

    2005-07-01

    We report 12 new focal mechanisms from earthquakes in NE and SW Tanzania where the stress regime within the East African rift system is not well constrained. Focal mechanisms for events at the intersection of the Lake Tanganyika and Rukwa rifts in SW Tanzania indicate a complicated stress pattern with possible dextral strike-slip motion on some faults but oblique motion on others (either sinistral on NW striking faults or dextral on NE striking faults). Within the Rukwa rift, focal mechanisms indicate normal dip-slip motion with NE-SW opening. In NE Tanzania where the Eastern rift impinges on the margin of the Tanzania Craton, fault motions are consistent with a zone of distributed block faults and sub E-W extension. All twelve earthquakes likely nucleated within the crust.

  16. Cenozoic East African Magmatism and the African LLSVP

    NASA Astrophysics Data System (ADS)

    Rooney, T. O.

    2017-12-01

    The Ethiopian-Arabian Large Igneous Province preserves a 45 Ma record of mantle-lithosphere interaction, manifesting as flood basalts, shield volcanoes, silicic eruptions, and monogenetic magmatic events. During the Cenozoic, magmatism in in this region has resulted from the interplay between lithospheric extension and material upwelling from the African large low-velocity shear velocity province (LLSVP). Consequently, the study of magmatism in East Africa provides a complement to investigations of the Pacific LLSVP. The volumetrically significant flood basalt events of the Eocene to Early Miocene suggest a role for material upwelling from the African LLSVP, however the modern focusing of East African magmatism into oceanic spreading centers and continental rifts also highlights the control of lithospheric thinning in magma generation processes. The study of the mantle reservoirs derived from the African LLSVP is complicated by the slow relative motion of the African plate during the Cenozoic, resulting in significant spatial overlap in lavas derived from different magmatic events. This complexity is being resolved with enhanced geochronological precision and a focus on the geochemical characteristics of the volcanic products. It is now apparent that there are three distinct pulses of basaltic volcanism, followed by either by bimodal or silicic volcanism, totaling ca. 720,000 km3 of magmatism: (A) Eocene Initial Phase from 45-34 Ma, which is dominated by basaltic volcanism and focused on Southern Ethiopia and Northern Kenya (Turkana). (B) Oligocene Traps phase from 33.9-27 Ma, which coincides with a significant increase in the aerial extent of volcanism. Broadly age equivalent 1 to 2 km thick sequences of dominantly basalt are centered on the NW Ethiopian Plateau and Yemen, but also Turkana during this period. (C) Early Miocene resurgence phase from 26.9-22 Ma, where basaltic volcanism is seen throughout the region but is less volumetrically significant than the

  17. Seismic anisotropy across the east African plateau from shear wave splitting analysis

    NASA Astrophysics Data System (ADS)

    Bagley, B. C.; Nyblade, A.; Mulibo, G.; Tugume, F.

    2011-12-01

    Previous studies of the east African plateau reveal complicated patterns of seismic anisotropy that are not easily explained by a single mechanism. The pattern is defined by rift-parallel fast directions for stations within or near Cenozoic rift valleys, and near-null results in Precambrian terrains away from the rift. Data from 65 temporary Africa Array stations deployed between 2007 and 2011 are being used to make new shear wave splitting measurements. The stations span the east African plateau and cover both the eastern and western branches of the east African rift system, as well as unrifted Proterozoic and Archean terrains in Uganda, Kenya, Tanzania, and Zambia. Through analysis of shear wave splitting we will better constrain the distribution of seismic anisotropy, and and from it gain new insight into the tectonic evolution of east Africa.

  18. Alternative Reproductive Tactics in the Shell-Brooding Lake Tanganyika Cichlid Neolamprologus brevis

    PubMed Central

    Ota, Kazutaka; Aibara, Mitsuto; Morita, Masaya; Awata, Satoshi; Hori, Michio; Kohda, Masanori

    2012-01-01

    Alternative reproductive tactics (ARTs) are found in several Lake Tanganyika shell-brooding cichlids. Field studies were conducted in the Wonzye population to examine reproductive ecology and ARTs in the Lake Tanganyika shell-brooding cichlid Neolamprologus brevis. We discovered that this fish occurred in both rocky- and sandy-bottom habitats, but in rocky habitats, brood-caring females exclusively occurred in shell-patches that another cichlid species created. All N. brevis of both sexes in the patches were sexually mature, whereas immature males and females with unripe eggs were found frequently in sandy-bottom habitats. Males in sandy-bottom habitats were smaller, but fed more frequently and were in better somatic condition than males in the patches. Similar tendency was found in females. This indicates that N. brevis uses different habitats depending on the stage of its life history, with migration from sandy-bottom habitats to the shell-patches for reproduction. Males in the patches exhibited different behavior patterns: floating above the patches and lying in the patches. The former was larger, more aggressive, and invested less in gonads (relative to body size) than the latter. These results accord with those of other shell-brooding Lake Tanganyika cichlids with ARTs, and they therefore suggest the presence of ARTs in N. brevis. PMID:22888463

  19. East African Rift

    NASA Technical Reports Server (NTRS)

    2008-01-01

    Places where the earth's crust has formed deep fissures and the plates have begun to move apart develop rift structures in which elongate blocks have subsided relative to the blocks on either side. The East African Rift is a world-famous example of such rifting. It is characterized by 1) topographic deep valleys in the rift zone, 2) sheer escarpments along the faulted walls of the rift zone, 3) a chain of lakes within the rift, most of the lakes highly saline due to evaporation in the hot temperatures characteristic of climates near the equator, 4) voluminous amounts of volcanic rocks that have flowed from faults along the sides of the rift, and 5) volcanic cones where magma flow was most intense. This example in Kenya displays most of these features near Lake Begoria.

    The image was acquired December 18, 2002, covers an area of 40.5 x 32 km, and is located at 0.1 degrees north latitude, 36.1 degrees east longitude.

    The U.S. science team is located at NASA's Jet Propulsion Laboratory, Pasadena, Calif. The Terra mission is part of NASA's Science Mission Directorate.

  20. East African Cenozoic vegetation history.

    PubMed

    Linder, Hans Peter

    2017-11-01

    The modern vegetation of East Africa is a complex mosaic of rainforest patches; small islands of tropic-alpine vegetation; extensive savannas, ranging from almost pure grassland to wooded savannas; thickets; and montane grassland and forest. Here I trace the evolution of these vegetation types through the Cenozoic. Paleogene East Africa was most likely geomorphologically subdued and, as the few Eocene fossil sites suggest, a woodland in a seasonal climate. Woodland rather than rainforest may well have been the regional vegetation. Mountain building started with the Oligocene trap lava flows in Ethiopia, on which rainforest developed, with little evidence of grass and none of montane forests. The uplift of the East African Plateau took place during the middle Miocene. Fossil sites indicate the presence of rainforest, montane forest and thicket, and wooded grassland, often in close juxtaposition, from 17 to 10 Ma. By 10 Ma, marine deposits indicate extensive grassland in the region and isotope analysis indicates that this was a C 3 grassland. In the later Miocene rifting, first of the western Albertine Rift and then of the eastern Gregory Rift, added to the complexity of the environment. The building of the high strato-volcanos during the later Mio-Pliocene added environments suitable for tropic-alpine vegetation. During this time, the C 3 grassland was replaced by C 4 savannas, although overall the extent of grassland was reduced from the mid-Miocene high to the current low level. Lake-level fluctuations during the Quaternary indicate substantial variation in rainfall, presumably as a result of movements in the intertropical convergence zone and the Congo air boundary, but the impact of these fluctuations on the vegetation is still speculative. I argue that, overall, there was an increase in the complexity of East African vegetation complexity during the Neogene, largely as a result of orogeny. The impact of Quaternary climatic fluctuation is still poorly understood

  1. East African and Kuunga Orogenies in Tanzania - South Kenya

    NASA Astrophysics Data System (ADS)

    Fritz, H.; Hauzenberger, C. A.; Tenczer, V.

    2012-04-01

    Tanzania and southern Kenya hold a key position for reconstructing Gondwana consolidation because here different orogen belts with different tectonic styles interfere. The older, ca. 650-620 Ma East African Orogeny resulted from the amalgamation of arc terranes in the northern Arabian-Nubian Shield (ANS) and continental collision between East African pieces and parts of the Azania terrane in the south (Collins and Pisarevsky, 2005). The change form arc suturing to continental collision settings is found in southern Kenya where southernmost arcs of the ANS conjoin with thickened continental margin suites of the Eastern Granulite Belt. The younger ca. 570-530 Ma Kuunga orogeny heads from the Damara - Zambesi - Irumide Belts (De Waele et al., 2006) over Tanzania - Mozambique to southern India and clashes with the East African orogen in southern-central Tanzania. Two transitional orogen settings may be defined, (1) that between island arcs and inverted passive continental margin within the East African Orogen and, (2) that between N-S trending East African and W-E trending Kuungan orogenies. The Neoproterozoic island arc suites of SE-Kenya are exposed as a narrow stripe between western Azania and the Eastern Granulite belt. This suture is a steep, NNW stretched belt that aligns roughly with the prominent southern ANS shear zones that converge at the southern tip of the ANS (Athi and Aswa shear zones). Oblique convergence resulted in low-vorticity sinstral shear during early phases of deformation. Syn-magmatic and syn-tectonic textures are compatible with deformation at granulite metamorphic conditions and rocks exhumed quickly during ongoing transcurrent motion. The belt is typified as wrench tectonic belt with horizontal northwards flow of rocks within deeper portions of an island arc. The adjacent Eastern Granulite Nappe experienced westward directed, subhorizontal, low-vorticity, high temperature flow at partly extreme metamorphic conditions (900°C, 1.2 to 1.4 GPa

  2. Anthropometrics and Body Composition in East African Runners: Potential Impact on Performance.

    PubMed

    Mooses, Martin; Hackney, Anthony C

    2017-04-01

    Maximal oxygen uptake (V̇O 2 max), fractional utilization of V̇O 2 max during running, and running economy (RE) are crucial factors for running success for all endurance athletes. Although evidence is limited, investigations of these key factors indicate that East Africans' superiority in distance running is largely due to a unique combination of these factors. East African runners appear to have a very high level of RE most likely associated, at least partly, with anthropometric characteristics rather than with any specific metabolic property of the working muscle. That is, evidence suggest that anthropometrics and body composition might have important parameters as determinants of superior performance of East African distance runners. Regrettably, this role is often overlooked and mentioned as a descriptive parameter rather than an explanatory parameter in many research studies. This brief review article provides an overview of the evidence to support the critical role anthropometrics and body composition has on the distance running success of East African athletes. The structural form and shape of these athletes also has a downside, because having very low BMI or body fat increases the risk for relative energy deficiency in sport (RED-S) conditions in both male and female runners, which can have serious health consequences.

  3. Signatures of positive selection in East African Shorthorn Zebu: a genome-wide SNP analysis

    USDA-ARS?s Scientific Manuscript database

    The small East African Shorthorn Zebu is the main indigenous cattle across East Africa. A recent genome wide SNPs analysis has revealed their ancient stable African taurine x Asian zebu admixture. Here, we assess the presence of candidate signature of positive selection in their genome, with the aim...

  4. The species flocks of East African cichlid fishes: recent advances in molecular phylogenetics and population genetics

    NASA Astrophysics Data System (ADS)

    Salzburger, Walter; Meyer, Axel

    With more than 3,000 species, the fish family Cichlidae is one of the most species-rich families of vertebrates. Cichlids occur in southern and central America, Africa, Madagascar, and India. The hotspot of their biodiversity is East Africa, where they form adaptive radiations composed of hundreds of endemic species in several lakes of various sizes and ages. The unparalleled species richness of East African cichlids has been something of a conundrum for evolutionary biologists and ecologists, since it has been in doubt whether these hundreds of species arose by allopatric speciation or whether it is necessary to invoke somewhat less traditional models of speciation, such as micro-allopatric, peripatric, or even sympatric speciation or evolution through sexual selection mediated by female choice. Ernst Mayr's analyses of these evolutionary uniquely diverse species assemblages have contributed to a more direct approach to this problem and have led to a deeper understanding of the patterns and processes that caused the formation of these huge groups of species. We review here recent molecular data on population differentiation and phylogenetics, which have helped to unravel, to some extent, the patterns and processes that led to the formation and ecological maintenance of cichlid species flocks. It is becoming apparent that sexually selected traits do play an important role in speciation in micro-allopatric or even sympatric settings. Species richness seems to be roughly correlated with the surface area, but not the age, of the lakes. We observe that the oldest lineages of a species flock of cichlids are often less species-rich and live in the open water or deepwater habitats. While the species flocks of the Lake Malawai and the Lake Victoria areas were shown to be monophyletic, the cichlid assemblage of Lake Tanganyika seems to consist of several independent species flocks. Cichlids emerge as an evolutionary model system in which many fundamental questions in

  5. Type 1 Diabetes Among East African Immigrant and Nonimmigrant Black Youth in the U.S.

    PubMed

    O'Connor, M Rebecca; Dobra, Adrian; Voss, Joachim; Pihoker, Catherine; Doorenbos, Ardith

    2015-01-01

    Type 1 diabetes has not previously been described in East African immigrant youth in the United States. The purpose of this study was to compare East African immigrant and nonimmigrant Black youth with type 1 diabetes. Among other clinical and demographic differences, estimated prevalence of type 1 diabetes was nearly four times higher among East African youth in King County, Washington (6.20/1000, 95% confidence interval (CI) [4.49, 7.91] vs. 1.56/1000, 95% CI [1.03, 2.09]) compared to nonimmigrant Black youth. These observations are lost within the Black/African American race classification and additional work is needed to confirm and further explore these findings. Copyright © 2015 Elsevier Inc. All rights reserved.

  6. Job conditions, job satisfaction, somatic complaints and burnout among East African nurses.

    PubMed

    van der Doef, Margot; Mbazzi, Femke Bannink; Verhoeven, Chris

    2012-06-01

    To describe job conditions, job satisfaction, somatic complaints and burnout of female East African nurses working in public and private hospitals and to determine how these well-being outcomes are associated with job conditions. Insight into job conditions, health and well-being status and their interrelation is virtually lacking for East African nurses. Cross-sectional survey of 309 female nurses in private and public hospitals in Kenya, Tanzania and Uganda. Nurses completed a survey assessing job conditions and job satisfaction (the Leiden Quality of Work Life Questionnaire-nurses version), somatic complaints (subscale of the Symptom CheckList) and burnout (Maslach Burnout Inventory). The East African nurses show high levels of somatic complaints, and nearly one-third of the sample would be labelled as burned out. In comparison with a Western European nurses reference group, the nurses score unfavourably on job conditions that require financial investment (e.g. workload, staffing, equipment and materials). On aspects related to the social climate (e.g. decision latitude, cooperation), however, they score more favourably. In comparison with private hospital nurses, public hospital nurses score similarly on aspects related to the social climate, but worse on the other job conditions. Public hospital nurses have a lower job satisfaction than private hospital nurses, but show comparable levels of somatic complaints and burnout. Strongest correlates of low job satisfaction are low supervisor support and low financial reward. Burnout is mainly associated with high workload and inadequate information provision, whereas somatic complaints are associated with demanding physical working conditions. Improvement in job conditions may reduce the high levels of burnout and somatic complaints and enhance job satisfaction in East African nurses. Efforts and investments should be made to improve the job conditions in East African nurses as they are key persons in the delivery of

  7. Evolution of brain-body allometry in Lake Tanganyika cichlids.

    PubMed

    Tsuboi, Masahito; Kotrschal, Alexander; Hayward, Alexander; Buechel, Severine Denise; Zidar, Josefina; Løvlie, Hanne; Kolm, Niclas

    2016-07-01

    Brain size is strongly associated with body size in all vertebrates. This relationship has been hypothesized to be an important constraint on adaptive brain size evolution. The essential assumption behind this idea is that static (i.e., within species) brain-body allometry has low ability to evolve. However, recent studies have reported mixed support for this view. Here, we examine brain-body static allometry in Lake Tanganyika cichlids using a phylogenetic comparative framework. We found considerable variation in the static allometric intercept, which explained the majority of variation in absolute and relative brain size. In contrast, the slope of the brain-body static allometry had relatively low variation, which explained less variation in absolute and relative brain size compared to the intercept and body size. Further examination of the tempo and mode of evolution of static allometric parameters confirmed these observations. Moreover, the estimated evolutionary parameters indicate that the limited observed variation in the static allometric slope could be a result of strong stabilizing selection. Overall, our findings suggest that the brain-body static allometric slope may represent an evolutionary constraint in Lake Tanganyika cichlids. © 2016 The Author(s).

  8. Ecological observations on an East African bat community

    USGS Publications Warehouse

    O'Shea, Thomas J.; Vaughan, Terry A.

    1980-01-01

    The structure and ecology of bat faunas is a subject of interest to mammalogists (Findley, 1976; Wilson, 1973). Syntopic African bat communities, however, have received little study in comparison with neotropical faunas (cf. Fleming et al., 1972; LaVal and Fitch, 1977; McNab, 1971). Verschuren (1957) presented natural history information and species accounts for a localized central African bat fauna. Foraging related characteristics of a Rhodesian community have also been analyzed (Fenton, 1975; Fenton et al., 1977), but not on a seasonal basis. Other reports on African bat faunas are restricted to regional summaries (cf. Koopman, 1975 or Rosevear, 1965) and do not consider ecological aspects of a single localized community. The purpose of our study was to follow species composition, reproduction, and foraging related characteristics of an East African bat fauna over a full annual cycle.

  9. Geologic hypotheses of Lake Tanganyika region, Zaire, drawn from ERTS imagery

    NASA Technical Reports Server (NTRS)

    Wolyce, U.; Ilunga, S.

    1974-01-01

    Based on initial work in the Lake Tanganyika area of eastern Zaire, it has been concluded that ERTS imagery is extremely useful for reconnaissance level geologic mapping and analysis in this region of the humid tropics. In particular, ERTS imagery has proven useful for recognizing and mapping regional structural units, for recognizing major structural features, and for arriving at some preliminary hypotheses about the mineral potential of the area. Results so far indicate that ERTS imagery can make a major contribution to the development of the mineral resources of the country. Research has concentrated on applications of ERTS imagery in the field of cartography, geology, forestry, hydrology and agriculture. For the work in geology, a test site was chosen in eastern Zaire on the shore of Lake Tanganyika in the vicinity of the Lukuga River. This area was selected because of its varied geology and the existence of two frames of cloud-free ERTS imagery.

  10. Genetic diversity of lactase persistence in East African populations.

    PubMed

    Hassan, Hisham Y; van Erp, Anke; Jaeger, Martin; Tahir, Hanan; Oosting, Marije; Joosten, Leo A B; Netea, Mihai G

    2016-01-04

    The expression of lactase which digests lactose from milk in humans is generally lost after weaning, but selected mutations influencing the promoter of the lactase gene have spread into the human populations. This is considered a classical example of gene-culture co-evolution, and several studies suggested that the lactase gene has been under strong directional evolutionary selective pressure in the past 5000 to 10,000 years. In the present study we investigated the distribution of three gene variants leading to lactase persistence in 12 different East African populations as well as one European population. Our results show that with the exception of Copts and Nilotic populations who are fully lactose non-persistent, the majority of populations of East Africa show at least partly lactose persistence, with both ethnic and socio-economic aspects playing an important role in the distribution of genetic variants. In this study, the variants C/G-13907 and T/G-13915, which are the major variants among the nomadic Arabs in the Arabia and Beja of East Africa, showed remarkable frequencies in Sudanese populations, especially those of pastoralists, in line with the historical links and bidirectional migration of nomadic populations between Arabia and East Africa. The C/T-13910 variant, generally associated with European populations is uniquely present among the Fulani. These data indicate that a combination of socio-economic, ethnic and evolutionary factors converged to shape the genetic structure of lactase persistence in East African populations.

  11. How wide is the East African Rift system?

    NASA Astrophysics Data System (ADS)

    Pierre, S.; Ebinger, C.; Naum, J.

    2017-12-01

    There has been a longstanding observation that earthquakes and volcanoes occur mostly at the edges of rigid tectonic plates, but that pattern changes during continental rifting where new plate boundaries are forming. The seismically and volcanically active East African rift system provides an opportunity to evaluate rigid plate tectonic models. The objective of this research is to evaluate the geographic spread of earthquakes and volcanoes across the African plate, including areas interpreted as smaller microplates in East Africa. The National Earthquake Information Center catalog of earthquakes spanning the time period 1976 to July 2017 and the Smithsonian Institution Global Volcanism Program catalogue of Holocene volcanoes were displayed using the open source Geographic Information System package GMT, using command line scripts. Earthquake moment tensors from the Global CMT project were also displayed with locations of earthquakes and volcanoes. We converted all of the earthquake magnitudes to moment magnitude (Mw) for comparison of energy release in different rift sectors. A first-order observation is that earthquakes and volcanoes occur across most of the continental region, and in parts of the oceanic region offshore East Africa. The pattern of earthquakes and volcanoes suggests that the African plate is breaking into smaller plates surrounding by zones of earthquakes and volcanoes, such as the Comoros-Davie Ridge-Madagascar seismo-volcanic zone, and the Southwestern rift zone. A comparison of the geographic distribution of earthquakes and volcanoes from places such as the Malawi rift, which has only one isolated volcanic province, and the Eastern rift, which has volcanoes along its length showed differences in the magnitude frequency distributions, which appear to correlate with the presence or absence of volcanism.

  12. A Revised Holocene History of Lake Kivu, East Africa

    NASA Astrophysics Data System (ADS)

    Votava, J. E.; Johnson, T. C.; Hecky, R. E.

    2013-12-01

    The great lakes of the East African Rift valley are a vast chain of lakes formed in a region of active tectonics. These large, deep lakes are relatively old and many (e.g. Tanganyika, Malawi, and Turkana) have greatly influenced our understanding of terrestrial, tropical East African paleoclimate. Lake Kivu (max depth, 485m) sits at the heart of these rift lakes, north of Lake Tanganyika between the Democratic Republic of the Congo and Rwanda (roughly 250 km west of Lake Victoria). At over 1,400 meters in elevation, this 2,060 km2 mesotrophic lake has a complex stratification regime imposed by hydrothermal springs and deep waters supersaturated at STP in CO2 and CH4 gasses. The active Virunga Volcanoes to the north of the lake supply heated, high-salinity waters below 280 meters water depth maintaining the modern crenogenic meromixis. Based on detailed studies of diatom assemblages and bulk sedimentology, previous workers have suggested this hydrothermal activity began roughly 5,000 years BP. Unfortunately, dating and stratigraphic correlations of these original cores from the 1970 Woods Hole Oceanographic Institution's expedition have been problematic. Here we offer an improved chronology and new carbonate analyses from cores recovered in 2012 and 2013. Our AMS radiocarbon ages come from six terrigeneous macrofossils spanning the last 9,100 years (cal BP). These ages suggest a rather high sedimentation rate on the order of 70cm/kyr, and hence, our 8 m-long core provides us with a high-resolution lake history for the past 10,000 years. Most notable over the past 5,000 years in the lake history is the repeated onset and cessation of carbonate deposition, punctuated by organic-rich intervals. Earlier studies of the Woods Hole cores placed the onset of carbonate deposition at ca. 11,000 years BP suggesting changes in lake hydrology (i.e. closed to open), while the abrupt cessation of carbonate was dated at ca. 5,000 years BP and attributed to the beginning of

  13. Characteristics of soils in selected maize growing sites along altitudinal gradients in East African highlands

    PubMed Central

    Njuguna, Elijah; Gathara, Mary; Nadir, Stanley; Mwalusepo, Sizah; Williamson, David; Mathé, Pierre-Etienne; Kimani, Jackson; Landmann, Tobias; Juma, Gerald; Ong’amo, George; Gatebe, Erastus; Ru, Bruno Le; Calatayud, Paul-andré

    2015-01-01

    Maize is the main staple crop in the East African Mountains. Understanding how the edaphic characteristics change along altitudinal gradients is important for maximizing maize production in East African Highlands, which are the key maize production areas in the region. This study evaluated and compared the levels of some macro and micro-elements (Al, Ca, Fe, K, Mg, Mn, Na and P) and other soil parameters (pH, organic carbon content, soil texture [i.e. % Sand, % Clay and % Silt], cation exchange capacity [CEC], electric conductivity [EC], and water holding capacity [HC]). Soil samples were taken from maize plots along three altitudinal gradients in East African highlands (namely Machakos Hills, Taita Hills and Mount Kilimanjaro) characterized by graded changes in climatic conditions. For all transects, pH, Ca, K and Mg decreased with the increase in altitude. In contrast, % Silt, organic carbon content, Al and water holding capacity (HC) increased with increasing altitude. The research provides information on the status of the physical–chemical characteristics of soils along three altitudinal ranges of East African Highlands and includes data available for further research. PMID:26509187

  14. Attitudes, perceptions and behaviours towards HIV testing among African-American and East African immigrant women in Washington, DC: implications for targeted HIV testing promotion and communication strategies.

    PubMed

    De Jesus, Maria; Carrete, Claudia; Maine, Cathleen; Nalls, Patricia

    2015-12-01

    The objective of the study was to examine and compare the HIV testing attitudes, perceptions and behaviours between African-American and East African immigrant women in the Washington, DC metropolitan area. Adopting an inductive, qualitative methodological approach, we conducted a total of 40 in-depth, semistructured interviews between October 2012 and March 2013. Qualitative thematic analysis was used to analyse the data. Overall, African-American women held more favourable views towards HIV testing than East African immigrant women. Very few East African immigrant women sought HIV testing intentionally. The majority of East African participants were tested inadvertently, while others tested for immigration-related or employment-related purposes. There were many barriers that impede women from seeking an HIV test including negative assumptions (eg, "Getting an HIV test implies that I am HIV positive"), negative emotions (eg, "Fear of being diagnosed with HIV and what this will mean for me") and potential negative reactions from partner or others (eg, "Getting an HIV test can signal distrust, disrespect, or infidelity"). There were nuances in how each group articulated some of these barriers and East African women expressed unique concerns that originated from experiences in their home countries. The study shed light into the complexity of factors that constrain women from presenting themselves voluntarily for an HIV test and highlighted the nuances between African-American and East African perceptions. Implications of findings for effective targeted HIV screening promotion and communication strategies among these groups of women are discussed. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/

  15. Attitudes, perceptions, and behaviors toward HIV testing among African American and East African immigrant women in Washington, D.C.: Implications for targeted HIV testing promotion and communication strategies

    PubMed Central

    De Jesus, Maria; Carrete, Claudia; Maine, Cathleen; Nalls, Patricia

    2015-01-01

    Objectives The objective of the study was to examine and compare the HIV testing attitudes, perceptions, and behaviors between African American and East African immigrant women in the Washington, D.C. Metropolitan area. Methods Adopting an inductive, qualitative methodological approach, we conducted a total of 40 in-depth, semi-structured interviews between October 2012 and March 2013. Qualitative thematic analysis was used to analyze the data. Results Overall, African American women held more favorable views toward HIV testing than East African immigrant women. Very few East African immigrant women sought HIV testing intentionally. The majority of East African participants were tested inadvertently, while others tested for immigration- or employment-related purposes. There were many barriers that impede women from seeking an HIV test including: negative assumptions (e.g., ‘Getting an HIV test implies that I am HIV positive’); negative emotions (e.g., ‘Fear of being diagnosed with HIV and what this will mean for me’); and potential negative reactions from partner or others (e.g., ‘Getting an HIV test can signal distrust, disrespect, or infidelity’). There were nuances in how each group articulated some of these barriers and East African women expressed unique concerns that originated from experiences in their home countries. Conclusions The study shed light into the complexity of factors that constrain women from presenting themselves voluntarily for an HIV test and highlighted the nuances between African American and East African perceptions. Implications of findings for effective targeted HIV screening promotion and communication strategies among these groups of women are discussed. PMID:25897146

  16. Maintaining Academic Integrity among East African University Students

    ERIC Educational Resources Information Center

    Mwamwenda, T. S.

    2012-01-01

    The purpose of this research was to examine the extent to which academic integrity is maintained in the academic programmes of three East African university students selected from one of the universities in each one of the three countries. For confidentiality and identification purposes, the universities were labeled A, B and C. The level of…

  17. Extremes in East African hydroclimate and links to Indo-Pacific variability on interannual to decadal timescales

    NASA Astrophysics Data System (ADS)

    Ummenhofer, Caroline C.; Kulüke, Marco; Tierney, Jessica E.

    2018-04-01

    East African hydroclimate exhibits considerable variability across a range of timescales, with implications for its population that depends on the region's two rainy seasons. Recent work demonstrated that current state-of-the-art climate models consistently underestimate the long rains in boreal spring over the Horn of Africa while overestimating the short rains in autumn. This inability to represent the seasonal cycle makes it problematic for climate models to project changes in East African precipitation. Here we consider whether this bias also has implications for understanding interannual and decadal variability in the East African long and short rains. Using a consistent framework with an unforced multi-century global coupled climate model simulation, the role of Indo-Pacific variability for East African rainfall is compared across timescales and related to observations. The dominant driver of East African rainfall anomalies critically depends on the timescale under consideration: Interannual variations in East African hydroclimate coincide with significant sea surface temperature (SST) anomalies across the Indo-Pacific, including those associated with the El Niño-Southern Oscillation (ENSO) in the eastern Pacific, and are linked to changes in the Walker circulation, regional winds and vertical velocities over East Africa. Prolonged drought/pluvial periods in contrast exhibit anomalous SST predominantly in the Indian Ocean and Indo-Pacific warm pool (IPWP) region, while eastern Pacific anomalies are insignificant. We assessed dominant frequencies in Indo-Pacific SST and found the eastern equatorial Pacific dominated by higher-frequency variability in the ENSO band, while the tropical Indian Ocean and IPWP exhibit lower-frequency variability beyond 10 years. This is consistent with the different contribution to regional precipitation anomalies for the eastern Pacific versus Indian Ocean and IPWP on interannual and decadal timescales, respectively. In the model

  18. East African upper mantle shear wave velocity structure derived from Rayleigh wave tomography

    NASA Astrophysics Data System (ADS)

    O'Donnell, J.; Nyblade, A.; Adams, A. N.; Mulibo, G.; Tugume, F.

    2011-12-01

    An expanded model of the three-dimensional shear wave velocity structure of the upper mantle beneath East Africa is being developed using data from the latest phases of the AfricaArray East African Seismic Experiment in conjunction with data from preceding studies. The combined dataset encompasses seismic stations which span Tanzania, Uganda and Zambia. From the new data, fundamental mode Rayleigh wave phase velocities are being measured at periods ranging from 20 to 180 seconds using the two-plane-wave method. These measurements will be combined with similarly processed measurements from previous studies and inverted for an upper mantle three-dimensional shear wave velocity model. In particular, the model will further constrain the morphology of the low velocity anomaly which underlies the East African Plateau extending to the southwest beneath Zambia.

  19. East African wetland-catchment data base for sustainable wetland management

    NASA Astrophysics Data System (ADS)

    Leemhuis, Constanze; Amler, Esther; Diekkrüger, Bernd; Gabiri, Geofrey; Näschen, Kristian

    2016-10-01

    Wetlands cover an area of approx. 18 Mio ha in the East African countries of Kenya, Rwanda, Uganda and Tanzania, with still a relative small share being used for food production. Current upland agricultural use intensification in these countries due to demographic growth, climate change and globalization effects are leading to an over-exploitation of the resource base, followed by an intensification of agricultural wetland use. We aim on translating, transferring and upscaling knowledge on experimental test-site wetland properties, small-scale hydrological processes, and water related ecosystem services under different types of management from local to national scale. This information gained at the experimental wetland/catchment scale will be embedded as reference data within an East African wetland-catchment data base including catchment physical properties and a regional wetland inventory serving as a base for policy advice and the development of sustainable wetland management strategies.

  20. Comparative Analysis of Breast Cancer Phenotypes in African American, White American, and West Versus East African patients: Correlation Between African Ancestry and Triple-Negative Breast Cancer.

    PubMed

    Jiagge, Evelyn; Jibril, Aisha Souleiman; Chitale, Dhananjay; Bensenhaver, Jessica M; Awuah, Baffour; Hoenerhoff, Mark; Adjei, Ernest; Bekele, Mahteme; Abebe, Engida; Nathanson, S David; Gyan, Kofi; Salem, Barbara; Oppong, Joseph; Aitpillah, Francis; Kyei, Ishmael; Bonsu, Ernest Osei; Proctor, Erica; Merajver, Sofia D; Wicha, Max; Stark, Azadeh; Newman, Lisa A

    2016-11-01

    Triple-negative breast cancer (TNBC) is more common among African American (AA) and western sub-Saharan African breast cancer (BC) patients compared with White/Caucasian Americans (WA) and Europeans. Little is known about TNBC in east Africa. Invasive BC diagnosed 1998-2014 were evaluated: WA and AA patients from the Henry Ford Health System in Detroit, Michigan; Ghanaian/west Africans from the Komfo Anokye Teaching Hospital in Kumasi, Ghana; and Ethiopian/east Africans from the St. Paul's Hospital Millennium Medical College in Addis Ababa, Ethiopia. Histopathology and immunohistochemistry for estrogen receptor (ER), progesterone receptor (PR), and HER2/neu expression was performed in Michigan on formalin-fixed, paraffin-embedded samples from all cases. A total of 234 Ghanaian (mean age 49 years), 94 Ethiopian (mean age 43 years), 272 AA (mean age 60 years), and 321 WA (mean age 62 years; p = 0.001) patients were compared. ER-negative and TNBC were more common among Ghanaian and AA compared with WA and Ethiopian cases (frequency ER-negativity 71.1 and 37.1 % vs. 19.8 and 28.6 % respectively, p < 0.0001; frequency TNBC 53.2 and 29.8 % vs. 15.5 and 15.0 %, respectively, p < 0.0001). Among patients younger than 50 years, prevalence of TNBC remained highest among Ghanaians (50.8 %) and AA (34.3 %) compared with WA and Ethiopians (approximately 16 % in each; p = 0.0002). This study confirms an association between TNBC and West African ancestry; TNBC frequency among AA patients is intermediate between WA and Ghanaian/West Africans consistent with genetic admixture following the west Africa-based trans-Atlantic slave trade. TNBC frequency was low among Ethiopians/East Africans; this may reflect less shared ancestry between AA and Ethiopians.

  1. A one-size-fits-all HIV prevention and education approach?: Analyzing and interpreting divergent HIV risk perceptions between African American and East African immigrant women in Washington, DC

    PubMed Central

    De Jesus, Maria; Taylor, Juanita; Maine, Cathleen; Nalls, Patricia

    2015-01-01

    Background To date, there are very few comparative US studies and none in DC that distinguish between US-born and foreign-born Black women to examine and compare their perceptions of HIV risk. This qualitative study, therefore, analyzes African American and East African women’s perceptions of HIV risk in the Washington DC Metropolitan area, which has the highest AIDS rate in the US. Methods Forty in-depth, semi-structured interviews and 10 cognitive interviews were conducted among a sample of 25 African American women and 25 East African born women between October 2012 and March 2013 to examine perceptions regarding HIV risk. The in-depth semi-structured interviews were preceded by the cognitive interviews and accompanying survey. Study protocol was reviewed and approved by the American University Institutional Review Board. Results Adopting Boerma and Weir’s Proximate Determinants conceptual framework to interpret the data, the results of the study demonstrate that African American and East African immigrant women have divergent perceptions of HIV risk. While African American women ascribe HIV risk to individual-level behaviors and choices such as unprotected sex, East African women attribute HIV risk to conditions of poverty and survival. Conclusions Study findings suggest that addressing HIV prevention and education among Black women in DC will require distinct and targeted strategies that are culturally and community-centered in order to resonate with these different audiences. PMID:26766523

  2. Emerging landscape degradation trends in the East African Horn

    NASA Astrophysics Data System (ADS)

    Pricope, N. G.; Michaelsen, J.; Husak, G. J.; Funk, C. C.; Lopez-Carr, D.

    2012-12-01

    Increasing climate variability along with declining trends in rainfall represent major risk factors affecting food security in many regions of the world. We identify Africa-wide regions where significant rainfall decreases from 1979-2011 are coupled with significant human population density increases. The rangelands of the East African Horn remain one of the world's most food insecure regions with significantly increasing human populations predominantly dependent on pastoralist and agro-pastoralist livelihoods. Widespread vegetation degradation is occurring, adversely impacting fragile ecosystems and human livelihoods. Using MODIS land cover and normalized difference vegetation index (NDVI) data collected since 2000, we observe significant changes in vegetation patterns and productivity over the last decade across the East African Horn and demonstrate that these two products can be used concurrently at large spatial scales to monitor vegetation dynamics at decadal time scales. Results demonstrate that a near doubling of the population in pastoral regions is linked with hotspots of degradation in vegetation condition. The most significant land cover change and browning trends are observed in areas experiencing drying precipitation trends in addition to increasing population pressures. These findings have serious implications for current and future regional food security monitoring and forecasting and for mitigation and adaptation strategies in a region where population is expected to continue increasing against a backdrop of drying climate trends.Fig.1(a)Change in standardized precipitation index in Africa between 1979-2010 (b)Change in population density at continental scale using the GRUMPv1 1990 and 2000 and AfriPop 2010 population density datasets Fig.2 Land cover change trajectories based on 2001-2009 MOD12Q1 Land Cover product for the East African Horn overlaid over aggregated FEWS Net Livelihoods Zones.

  3. Structure of some East African Glossina fuscipes fuscipes populations

    PubMed Central

    Krafsur, E. S.; Marquez, J. G.; Ouma, J. O.

    2008-01-01

    Glossina fuscipes fuscipes Newstead 1910 (Diptera: Glossinidae) is the primary vector of human sleeping sickness in Kenya and Uganda. This is the first report on its population structure. A total of 688 nucleotides of mitochondrial ribosomal 16S2 and cytochrome oxidase I genes were sequenced. Twenty-one variants were scored in 79 flies from three geographically diverse natural populations. Four haplotypes were shared among populations, eight were private and nine were singletons. The mean haplotype and nucleotide diversities were 0.84 and 0.009, respectively. All populations were genetically differentiated and were at demographic equilibrium. In addition, a longstanding laboratory culture originating from the Central African Republic (CAR-lab) in 1986 (or before) was examined. Haplotype and nucleotide diversities in this culture were 0.95 and 0.012, respectively. None of its 27 haplotypes were shared with the East African populations. A first approximation of relative effective population sizes was Uganda > CAR-lab > Kenya. It was concluded that the structure of G. f. fuscipes populations in East Africa is localized. PMID:18816270

  4. The episode of genetic drift defining the migration of humans out of Africa is derived from a large east African population size.

    PubMed

    Elhassan, Nuha; Gebremeskel, Eyoab Iyasu; Elnour, Mohamed Ali; Isabirye, Dan; Okello, John; Hussien, Ayman; Kwiatksowski, Dominic; Hirbo, Jibril; Tishkoff, Sara; Ibrahim, Muntaser E

    2014-01-01

    Human genetic variation particularly in Africa is still poorly understood. This is despite a consensus on the large African effective population size compared to populations from other continents. Based on sequencing of the mitochondrial Cytochrome C Oxidase subunit II (MT-CO2), and genome wide microsatellite data we observe evidence suggesting the effective size (Ne) of humans to be larger than the current estimates, with a foci of increased genetic diversity in east Africa, and a population size of east Africans being at least 2-6 fold larger than other populations. Both phylogenetic and network analysis indicate that east Africans possess more ancestral lineages in comparison to various continental populations placing them at the root of the human evolutionary tree. Our results also affirm east Africa as the likely spot from which migration towards Asia has taken place. The study reflects the spectacular level of sequence variation within east Africans in comparison to the global sample, and appeals for further studies that may contribute towards filling the existing gaps in the database. The implication of these data to current genomic research, as well as the need to carry out defined studies of human genetic variation that includes more African populations; particularly east Africans is paramount.

  5. Use of Machine Learning Techniques for Identification of Robust Teleconnections to East African Rainfall Variability

    NASA Technical Reports Server (NTRS)

    Roberts, J. Brent; Robertson, F. R.; Funk, C.

    2014-01-01

    Hidden Markov models can be used to investigate structure of subseasonal variability. East African short rain variability has connections to large-scale tropical variability. MJO - Intraseasonal variations connected with appearance of "wet" and "dry" states. ENSO/IOZM SST and circulation anomalies are apparent during years of anomalous residence time in the subseasonal "wet" state. Similar results found in previous studies, but we can interpret this with respect to variations of subseasonal wet and dry modes. Reveal underlying connections between MJO/IOZM/ENSO with respect to East African rainfall.

  6. Sesquiterpenes from the east African sandalwood Osyris tenuifolia.

    PubMed

    Kreipl, Andreas Th; König, Wilfried A

    2004-07-01

    The essential oil of the east African sandalwood Osyris tenuifolia was investigated by chromatographic and spectroscopic methods. Beside several already known sesquiterpenes four new compounds could be isolated by preparative gas chromatography and their structures investigated by mass spectroscopy and NMR techniques. Two of the new compounds--tenuifolene (17) and ar-tenuifolene (15)--show a new sesquiterpene backbone. 2,(7Z,10Z)-Bisabolatrien-13-ol (23) and the cyclic ether lanceoloxide (21) belong to the bisabolanes.

  7. Signatures of selection for environmental adaptation and zebu × taurine hybrid fitness in East African shorthorn zebu

    USDA-ARS?s Scientific Manuscript database

    The East African Shorthorn Zebu (EASZ) cattle are ancient hybrid between Asian zebu × African taurine cattle preferred by local farmers due to their adaptability to the African environment. The genetic controls of these adaptabilities are not clearly understood yet. Here, we genotyped 92 EASZ sample...

  8. The East African monsoon system: Seasonal climatologies and recent variations: Chapter 10

    USGS Publications Warehouse

    Funk, Christopher C.; Hoell, Andrew; Shukla, Shraddhanand; Husak, Gregory J.; Michaelsen, J.

    2016-01-01

    This chapter briefly reviews the complex climatological cycle of the East African monsoon system, paying special attention to its connection to the larger Indo-Pacific-Asian monsoon cycle. We examine the seasonal monsoon cycle, and briefly explore recent circulation changes. The spatial footprint of our analysis corresponds with the “Greater Horn of Africa” (GHA) region, extending from Tanzania in the south to Yemen and Sudan in the north. During boreal winter, when northeast trade winds flow across the northwest Indian Ocean and the equatorial moisture transports over the Indian Ocean exhibit strong westerly mean flows over the equatorial Indian Ocean, East African precipitation is limited to a few highland areas. As the Indian monsoon circulation transitions during boreal spring, the trade winds over the northwest Indian Ocean reverse, and East African moisture convergence supports the “long” rains. In boreal summer, the southwesterly Somali Jet intensifies over eastern Africa. Subsidence forms along the westward flank of this jet, shutting down precipitation over eastern portions of East Africa. In boreal fall, the Jet subsides, but easterly moisture transports support rainfall in limited regions of the eastern Horn of Africa. We use regressions with the trend mode of global sea surface temperatures to explore potential changes in the seasonal monsoon circulations. Significant reductions in total precipitable water are indicated in Kenya, Tanzania, Rwanda, Burundi, Uganda, Ethiopia, South Sudan, Sudan, and Yemen, with moisture transports broadly responding in ways that reinforce the climatological moisture transports over the Indian Ocean. Over Kenya, southern Ethiopia and Somalia, regressions with velocity potential indicate increased convergence aloft. Near the surface, this convergence appears to manifest as a surface high pressure system that modifies moisture transports in these countries as well as Uganda, Tanzania, Rwanda, and Burundi. An analysis

  9. Recent paleorecords document rising mercury contamination in Lake Tanganyika

    USGS Publications Warehouse

    Conaway, C.H.; Swarzenski, P.W.; Cohen, A.S.

    2012-01-01

    Recent Lake Tanganyika Hg deposition records were derived using 14C and excess 210Pb geochronometers in sediment cores collected from two contrasting depositional environments: the Kalya Platform, located mid-lake and more removed from watershed impacts, and the Nyasanga/Kahama River delta region, located close to the lake's shoreline north of Kigoma. At the Kalya Platform area, pre-industrial Hg concentrations are 23??0.2ng/g, increasing to 74ng/g in modern surface sediment, and the Hg accumulation rate has increased from 1.0 to 7.2??g/m 2/a from pre-industrial to present, which overall represents a 6-fold increase in Hg concentration and accumulation. At the Nyasanga/Kahama delta region, pre-industrial Hg concentrations are 20??3ng/g, increasing to 46ng/g in surface sediment. Mercury accumulation rate has increased from 30 to 70??g/m 2/a at this site, representing a 2-3-fold increase in Hg concentration and accumulation. There is a lack of correlation between charcoal abundance and Hg accumulation rate in the sediment cores, demonstrating that local biomass burning has little relationship with the observed Hg concentration or Hg accumulation rates. Examined using a sediment focusing-corrected mass accumulation rate approach, the cores have similar anthropogenic atmospheric Hg deposition profiles, suggesting that after accounting for background sediment concentrations the source of accumulating Hg is predominantly atmospheric in origin. In summary, the data document an increase of Hg flux to the Lake Tanganyika ecosystem that is consistent with increasing watershed sediment delivery with background-level Hg contamination, and regional as well as global increases in atmospheric Hg deposition. ?? 2011.

  10. Does Water Hyacinth on East African Lakes Promote Cholera Outbreaks?

    PubMed Central

    Feikin, Daniel R.; Tabu, Collins W.; Gichuki, John

    2010-01-01

    Cholera outbreaks continue to occur regularly in Africa. Cholera has been associated with proximity to lakes in East Africa, and Vibrio cholerae has been found experimentally to concentrate on the floating aquatic plant, water hyacinth, which is periodically widespread in East African lakes since the late 1980s. From 1994 to 2008, Nyanza Province, which is the Kenyan province bordering Lake Victoria, accounted for a larger proportion of cholera cases than expected by its population size (38.7% of cholera cases versus 15.3% of national population). Yearly water-hyacinth coverage on the Kenyan section of Lake Victoria was positively associated with the number of cholera cases reported in Nyanza Province (r = 0.83; P = 0.0010). Water hyacinth on freshwater lakes might play a role in initiating cholera outbreaks and causing sporadic disease in East Africa. PMID:20682884

  11. Stable Isotopes Reveal Nitrogen Loading to Lake Tanganyika from Remote Shoreline Villages

    NASA Astrophysics Data System (ADS)

    Kelly, Brianne; Mtiti, Emmanuel; McIntyre, Peter B.; Vadeboncoeur, Yvonne

    2017-02-01

    Access to safe water is an ongoing challenge in rural areas in Tanzania where communities often lack access to improved sanitation. Methods to detect contamination of surface water bodies, such as monitoring nutrient concentrations and bacterial counts, are time consuming and results can be highly variable in space and time. On the northeast shore of Lake Tanganyika, Tanzania, the low population density coupled with the high potential for dilution in the lake necessitates the development of a sensitive method for detecting contamination in order to avoid human health concerns. We investigated the potential use of nitrogen and carbon stable isotopes of snail tissues to detect anthropogenic nutrient loading along the northeast shore of Lake Tanganyika. δ15N of snails was positively related to human population size in the nearest village, but only for villages with >4000 inhabitants. The areal footprint of villages within their watershed was also significantly correlated with snail δ15N, while agricultural land use and natural vegetation were not. Dissolved nutrient concentrations were not significantly different between village and reference sites. Our results indicate that nitrogen isotopes provide a sensitive index of local nutrient loading that can be used to monitor contamination of oligotrophic aquatic environments with low surrounding population densities.

  12. Predicting and attributing recent East African Spring droughts with dynamical-statistical climate model ensembles

    NASA Astrophysics Data System (ADS)

    Funk, C. C.; Shukla, S.; Hoerling, M. P.; Robertson, F. R.; Hoell, A.; Liebmann, B.

    2013-12-01

    During boreal spring, eastern portions of Kenya and Somalia have experienced more frequent droughts since 1999. Given the region's high levels of food insecurity, better predictions of these droughts could provide substantial humanitarian benefits. We show that dynamical-statistical seasonal climate forecasts, based on the latest generation of coupled atmosphere-ocean and uncoupled atmospheric models, effectively predict boreal spring rainfall in this area. Skill sources are assessed by comparing ensembles driven with full-ocean forcing with ensembles driven with ENSO-only sea surface temperatures (SSTs). Our analysis suggests that both ENSO and non-ENSO Indo-Pacific SST forcing have played an important role in the increase in drought frequencies. Over the past 30 years, La Niña drought teleconnections have strengthened, while non-ENSO Indo-Pacific convection patterns have also supported increased (decreased) Western Pacific (East African) rainfall. To further examine the relative contribution of ENSO, low frequency warming and the Pacific Decadal Oscillation, we present decompositions of ECHAM5, GFS, CAM4 and GMAO AMIP simulations. These decompositions suggest that rapid warming in the western Pacific and steeper western-to-central Pacific SST gradients have likely played an important role in the recent intensification of the Walker circulation, and the associated increase in East African aridity. A linear combination of time series describing the Pacific Decadal Oscillation and the strength of Indo-Pacific warming are shown to track East African rainfall reasonably well. The talk concludes with a few thoughts linking the potentially important interplay of attribution and prediction. At least for recent East African droughts, it appears that a characteristic Indo-Pacific SST and precipitation anomaly pattern can be linked statistically to support forecasts and attribution analyses. The combination of traditional AGCM attribution analyses with simple yet

  13. A One-Size-Fits-All HIV Prevention and Education Approach?: Interpreting Divergent HIV Risk Perceptions Between African American and East African Immigrant Women in Washington, DC Using the Proximate-Determinants Conceptual Framework.

    PubMed

    De Jesus, Maria; Taylor, Juanita; Maine, Cathleen; Nalls, Patricia

    2016-02-01

    To date, there are very few comparative US studies and none in DC that distinguish between US-born and foreign-born black women to examine and compare their perceptions of HIV risk. This qualitative study, therefore, analyzes African American and East African women's perceptions of HIV risk in the Washington DC Metropolitan area, which has the highest AIDS rate in the United States. Forty in-depth, semistructured interviews and 10 cognitive interviews were conducted among a sample of 25 African American women and 25 East African born women between October 2012 and March 2013 to examine perceptions regarding HIV risk. The in-depth semistructured interviews were preceded by the cognitive interviews and accompanying survey. Study protocol was reviewed and approved by the American University Institutional Review Board. Adopting Boerma and Weir's Proximate Determinants conceptual framework to interpret the data, the results of the study demonstrate that African American and East African immigrant women have divergent perceptions of HIV risk. Although African American women ascribe HIV risk to individual-level behaviors and choices such as unprotected sex, East African women attribute HIV risk to conditions of poverty and survival. Study findings suggest that addressing HIV prevention and education among black women in DC will require distinct and targeted strategies that are culturally and community-centered to resonate with these different audiences.

  14. Yellow fever, Asia and the East African slave trade.

    PubMed

    Cathey, John T; Marr, John S

    2014-05-01

    Yellow fever is endemic in parts of sub-Saharan Africa and South America, yet its principal vectors--species of mosquito of the genus Aedes--are found throughout tropical and subtropical latitudes. Phylogenetic analyses indicate that yellow fever originated in Africa and that its spread to the New World coincided with the slave trade, but why yellow fever has never appeared in Asia remains a mystery. None of several previously proposed explanations for its absence there is considered satisfactory. We contrast the trans-Atlantic slave trade, and trade across the Sahara and to the Arabian Peninsula and Mesopotamia, with that to Far East and Southeast Asian ports before abolition of the African slave trade, and before the scientific community understood the transmission vector of yellow fever and the viral life cycle, and the need for shipboard mosquito control. We propose that these differences in slave trading had a primary role in the avoidance of yellow fever transmission into Asia in the centuries before the 20(th) century. The relatively small volume of the Black African slave trade between Africa and East and Southeast Asia has heretofore been largely ignored. Although focal epidemics may have occurred, the volume was insufficient to reach the threshold for endemicity.

  15. Separated by sand, fused by dropping water: habitat barriers and fluctuating water levels steer the evolution of rock-dwelling cichlid populations in Lake Tanganyika.

    PubMed

    Koblmüller, Stephan; Salzburger, Walter; Obermüller, Beate; Eigner, Eva; Sturmbauer, Christian; Sefc, Kristina M

    2011-06-01

    The conditions of phenotypic and genetic population differentiation allow inferences about the evolution, preservation and loss of biological diversity. In Lake Tanganyika, water level fluctuations are assumed to have had a major impact on the evolution of stenotopic littoral species, though this hypothesis has not been specifically examined so far. The present study investigates whether subtly differentiated colour patterns of adjacent Tropheus moorii populations are maintained in isolation or in the face of continuous gene flow, and whether the presumed influence of water level fluctuations on lacustrine cichlids can be demonstrated in the small-scale population structure of the strictly stenotopic, littoral Tropheus. Distinct population differentiation was found even across short geographic distances and minor habitat barriers. Population splitting chronology and demographic histories comply with our expectation of old and rather stable populations on steeper sloping shore, and more recently established populations in a shallower region. Moreover, population expansions seem to coincide with lake level rises in the wake of Late Pleistocene megadroughts ~100 KYA. The imprint of hydrologic events on current population structure in the absence of ongoing gene flow suggests that phenotypic differentiation among proximate Tropheus populations evolves and persists in genetic isolation. Sporadic gene flow is effected by lake level fluctuations following climate changes and controlled by the persistence of habitat barriers during lake level changes. Since similar demographic patterns were previously reported for Lake Malawi cichlids, our data furthermore strengthen the hypothesis that major climatic events synchronized facets of cichlid evolution across the East African Great Lakes. © 2011 Blackwell Publishing Ltd.

  16. Kanda fault: A major seismogenic element west of the Rukwa Rift (Tanzania, East Africa)

    NASA Astrophysics Data System (ADS)

    Vittori, Eutizio; Delvaux, Damien; Kervyn, François

    1997-09-01

    The NW-SE trending Rukwa Rift, part of the East African Rift System, links the approximately N-S oriented Tanganyika and Nyassa (Malawi) depressions. The rift has a complex half-graben structure, generally interpreted as the result of normal and strike-slip faulting. Morphological and structural data (e.g. fault scarps, faceted spurs, tilting of Quaternary continental deposits, volcanism, seismicity) indicate Late Quaternary activity within the rift. In 1910 an earthquake of M = 7.4 (historically the largest felt in Africa) struck the Rukwa region. The epicentre was located near the Kanda fault, which affects the Ufipa plateau, separating the Rukwa depression from the south-Tanganyika basin. The geomorphic expression of the Kanda fault is a prominent fresh-looking scarp more than 180 km long, from Tunduma to north of Sumbawanga, that strikes roughly NW-SE, and dips constantly northeast. No evidence for horizontal slip was observed. Generally, the active faulting affects a very narrow zone, and is only locally distributed over several subparallel scarps. The height of the scarp progressively decreases towards the northwest, from about 40-50 m to a few metres north of Sumbawanga. Faulted lacustrine deposits exposed in a road cut near Kaengesa were dated as 8340 ± 700 and 13 600 ± 1240 radiocarbon years. These low-energy deposits now hang more than 15 m above the present-day valley floor, suggesting rapid uplift during the Holocene. Due to its high rate of activity in very recent times, the Kanda Fault could have produced the 1910 earthquake. Detailed paleoseismological studies are used to characterize its recent history. In addition, the seismic hazard posed by this fault, which crosses the fast growing town of Sumbawanga, must be seriously considered in urban planning.

  17. Geodynamics of the East African Rift System ∼30 Ma ago: A stress field model

    NASA Astrophysics Data System (ADS)

    Min, Ge; Hou, Guiting

    2018-06-01

    The East African Rift System (EARS) is thought to be an intra-continental ridge that meets the Red Sea and the Gulf of Aden at the Ethiopian Afar as the failed arm of the Afar triple junction. The geodynamics of EARS is still unclear even though several models have been proposed. One model proposes that the EARS developed in a local tensile stress field derived from far-field loads because of the pushing of oceanic ridges. Alternatively, some scientists suggest that the formation of the EARS can be explained by upwelling mantle plumes beneath the lithospheric weak zone (e.g., the Pan-African suture zone). In our study, a shell model is established to consider the Earth's spherical curvature, the lithospheric heterogeneity of the African continent, and the coupling between the mantle plumes and the mid-ocean ridge. The results are calculated via the finite element method using ANSYS software and fit the geological evidence well. To discuss the effects of the different rock mechanical parameters and the boundary conditions, four comparative models are established with different parameters or boundary conditions. Model I ignores the heterogeneity of the African continent, Model II ignores mid-ocean spreading, Model III ignores the upwelling mantle plumes, and Model IV ignores both the heterogeneity of the African continent and the upwelling mantle plumes. Compared to these models is the original model that shows the best-fit results; this model indicates that the coupling of the upwelling mantle plumes and the mid-ocean ridge spreading causes the initial lithospheric breakup in Afar and East Africa. The extension direction and the separation of the EARS around the Tanzanian craton are attributed to the heterogeneity of the East African basement.

  18. The genetics of East African populations: a Nilo-Saharan component in the African genetic landscape

    PubMed Central

    Dobon, Begoña; Hassan, Hisham Y.; Laayouni, Hafid; Luisi, Pierre; Ricaño-Ponce, Isis; Zhernakova, Alexandra; Wijmenga, Cisca; Tahir, Hanan; Comas, David; Netea, Mihai G.; Bertranpetit, Jaume

    2015-01-01

    East Africa is a strategic region to study human genetic diversity due to the presence of ethnically, linguistically, and geographically diverse populations. Here, we provide new insight into the genetic history of populations living in the Sudanese region of East Africa by analysing nine ethnic groups belonging to three African linguistic families: Niger-Kordofanian, Nilo-Saharan and Afro-Asiatic. A total of 500 individuals were genotyped for 200,000 single-nucleotide polymorphisms. Principal component analysis, clustering analysis using ADMIXTURE, FST statistics, and the three-population test were used to investigate the underlying genetic structure and ancestry of the different ethno-linguistic groups. Our analyses revealed a genetic component for Sudanese Nilo-Saharan speaking groups (Darfurians and part of Nuba populations) related to Nilotes of South Sudan, but not to other Sudanese populations or other sub-Saharan populations. Populations inhabiting the North of the region showed close genetic affinities with North Africa, with a component that could be remnant of North Africans before the migrations of Arabs from Arabia. In addition, we found very low genetic distances between populations in genes important for anti-malarial and anti-bacterial host defence, suggesting similar selective pressures on these genes and stressing the importance of considering functional pathways to understand the evolutionary history of populations. PMID:26017457

  19. Seismicity of the Earth 1900-2013 East African Rift

    USGS Publications Warehouse

    Hayes, Gavin P.; Jones, Eric S.; Stadler, Timothy J.; Barnhart, William D.; McNamara, Daniel E.; Benz, Harley M.; Furlong, Kevin P.; Villaseñor, Antonio; Hayes, Gavin P.; Jones, Eric S.; Stadler, Timothy J.; Barnhart, William D.; McNamara, Daniel E.; Benz, Harley M.; Furlong, Kevin P.; Villaseñor, Antonio

    2014-01-01

    Rifting in East Africa is not all coeval; volcanism and faulting have been an ongoing phenomenon on the continent since the Eocene (~45 Ma). The rifting began in northern East Africa, and led to the separation of the Nubia (Africa) and Arabia plates in the Red Sea and Gulf of Aden, and in the Lake Turkana area at the Kenya-Ethiopia border. A Paleogene mantle superplume beneath East Africa caused extension within the Nubia plate, as well as a first order topographic high known as the African superswell which now includes most of the eastern and southern sectors of the Nubia plate. Widespread volcanism erupted onto much of the rising plateau in Ethiopia during the Eocene-Oligocene (45–29 Ma), with chains of volcanoes forming along the rift separating Africa and Arabia. Since the initiation of rifting in northeastern Africa, the system has propagated over 3,000 km to the south and southwest, and it experiences seismicity as a direct result of the extension and active magmatism.

  20. Participation and performance trends of East-African runners in Swiss half-marathons and marathons held between 2000 and 2010

    PubMed Central

    2013-01-01

    Background This study examined the changes in participation, performance and age of East African runners competing in half-marathons and marathons held in Switzerland between 2000 and 2010. Methods Race times, sex, age and origin of East African versus Non-African finishers of half-marathon and marathon finishers were analyzed. Results Across time, the number of Kenyan and Ethiopian finishers remained stable (P > 0.05) while the number of Non-African finishers increased for both women and men in both half-marathons and marathons (P < 0.05). In half-marathons, the top ten African women (71 ± 1.4 min) and top three (62.3 ± 0.6 min) and top ten (62.8 ± 0.4 min) African men were faster than their Non-African counterparts (P < 0.05). In marathons, however, there was no difference in race times between the top three African men (130.0 ± 0.0 min) and women (151.7 ± 2.5 min) compared to Non-African men (129.0 ± 1.0 min) and women (150.7 ± 1.2 min) (P > 0.05). In half-marathons and marathons was no difference in age between the best Non-African and the best African runners (P > 0.05). Conclusions During the last decade in Switzerland, the participation of Kenyan and Ethiopian runners in half- and full- marathons remained stable. In marathons there was no difference in age and performance between the top African and the top Non-African runners. Regarding half-marathons, the top African runners were faster but not younger than the top Non-African runners. Future insight should be gained by comparing the present results with participation, performance and age trends for East African runners competing in marathons held in larger countries. PMID:24289794

  1. Sensitivity of the East African rift lakes to climate variability

    NASA Astrophysics Data System (ADS)

    Olaka, L.; Trauth, M. H.

    2009-04-01

    Lakes in the East African Rift have provided excellent proxies to reconstruct past climate changes in the low latitudes. The lakes occupy volcano-tectonic depressions with highly variable climate and hydrological setting, that present a good opportunity to study the climatic and hydrogeological influences on the lake water budget. Previous studies have used lake floor sediments to establish the sensitivity of the East African rift lakes. This study focuses on geomorphology and climate to offer additional or alternative record of lake history that are key to quantifying sensitivity of these lakes as archives to external and internal climatic forcings. By using the published Holocene lake areas and levels, we analyze twelve lakes on the eastern arm of the East African rift; Ziway, Awassa, Turkana, Suguta, Baringo, Nakuru, Elmenteita, Naivasha, Natron, Manyara and compare with Lake Victoria, that occupies the plateau between the east and the western arms of the rift. Using the SRTM data, Hypsometric (area-altitude) analysis has been used to compare the lake basins between latitude 80 North and 30 South. The mean elevation for the lakes, is between 524 and 2262 meters above sea level, the lakes' hypsometric integrals (HI), a measure of landmass volume above the reference plane, vary from 0.31 to 0.76. The aridity index (Ai), defined as Precipitation/ Evapotranspiration, quantifies the water available to a lake, it encompasses land cover and climatic effects. It is lowest (arid) in the basin between the Ethiopian rift and the Kenyan rift and at the southern termination of the Kenyan Rift in the catchments of lake Turkana, Suguta, Baringo and Manyara with values of 0.55, 0.43, 0.43 and 0.5 respectively. And it is highest (wet) in the catchments of, Ziway, Awassa, Nakuru and Naivasha as 1.33,1.03 and 1.2 respectively, which occupy the highest points of the rift. Lake Victoria has an index of 1.42 the highest of these lakes and receives a high precipitation. We use a

  2. SHELL MICROSTRUCTURE OF GASTROPODS FROM LAKE TANGANYIKA, AFRICA: ADAPTATION, CONVERGENT EVOLUTION, AND ESCALATION.

    PubMed

    West, Kelly; Cohen, Andrew

    1996-04-01

    Gastropod shells from Lake Tanganyika, with their heavy calcification, coarse noded ribbing, spines, apertural lip thickening and repair scars, resemble marine shells more closely than they resemble other lacustrine shells. This convergence between Tanganyikan and marine gastropod shells, however, is not just superficial. Scanning electron microscope (SEM) studies reveal that the Tanganyikan shells are primarily layers of crossed-lamellar crystal architecture (that is, needle-like aragonite crystals arranged into laths that are packed into sheets such that the aragonite needles of adjacent laths are never parallel). The number of crossed-lamellar layers can vary from one to four between different Tanganyikan gastropod species. In species with two or more crossed-lamellar layers, the orientation of the lamellae is offset by approximately 90° between the different layers. The number of crossed-lamellar layers in the shell wall is positively correlated with shell strength and with predation resistance. Three and four crossed-lamellar layers in the shell wall evolved several times independently within the endemic thiarid gastropod radiation in Lake Tanganyika. Repeated origins of three and four crossed-lamellar layers suggest that they may be specific adaptations by Tanganyikan gastropods to strengthen their shells as a defense against shell-crushing predators. © 1996 The Society for the Study of Evolution.

  3. Recommendations for control of East african sleeping sickness in Uganda.

    PubMed

    Kotlyar, Simon

    2010-01-01

    East African sleeping sickness, caused by Trypanosoma brucei rhodesiense, is prominent in Uganda and poses a serious public health challenge in the region. This publication attempts to provide key components for designing a strategy for a nationwide initiative to provide insecticide-treatment of the animal reservoir to control T. b. rhodesiense. The contents of this article will focus on insecticide-based vector control strategies, monitoring and evaluation framework, and knowledge gaps required for future initiatives.

  4. Rapid radiation, ancient incomplete lineage sorting and ancient hybridization in the endemic Lake Tanganyika cichlid tribe Tropheini.

    PubMed

    Koblmüller, Stephan; Egger, Bernd; Sturmbauer, Christian; Sefc, Kristina M

    2010-04-01

    The evolutionary history of the endemic Lake Tanganyika cichlid tribe Tropheini, the sister group of the species flocks of Lake Malawi and the Lake Victoria region, was reconstructed from 2009 bp DNA sequence of two mitochondrial genes (ND2 and control region) and from 1293 AFLP markers. A period of rapid cladogenesis at the onset of the diversification of the Tropheini produced a multitude of specialized, predominantly rock-dwelling aufwuchs-feeders that now dominate in Lake Tanganyika's shallow habitat. Nested within the stenotopic rock-dwellers is a monophyletic group of species, which also utilize more sediment-rich habitat. Most of the extant species date back to at least 0.7 million years ago. Several instances of disagreement between AFLP and mtDNA tree topology are attributed to ancient incomplete lineage sorting, introgression and hybridization. A large degree of correspondence between AFLP clustering and trophic types indicated fewer cases of parallel evolution of trophic ecomorphology than previously inferred from mitochondrial data. (c) 2009 Elsevier Inc. All rights reserved.

  5. East African origins for Madagascan chickens as indicated by mitochondrial DNA

    PubMed Central

    Herrera, Michael B.; Thomson, Vicki A.; Wadley, Jessica J.; Piper, Philip J.; Sulandari, Sri; Dharmayanthi, Anik Budhi; Kraitsek, Spiridoula; Gongora, Jaime

    2017-01-01

    The colonization of Madagascar by Austronesian-speaking people during AD 50–500 represents the most westerly point of the greatest diaspora in prehistory. A range of economically important plants and animals may have accompanied the Austronesians. Domestic chickens (Gallus gallus) are found in Madagascar, but it is unclear how they arrived there. Did they accompany the initial Austronesian-speaking populations that reached Madagascar via the Indian Ocean or were they late arrivals with Arabian and African sea-farers? To address this question, we investigated the mitochondrial DNA control region diversity of modern chickens sampled from around the Indian Ocean rim (Southeast Asia, South Asia, the Arabian Peninsula, East Africa and Madagascar). In contrast to the linguistic and human genetic evidence indicating dual African and Southeast Asian ancestry of the Malagasy people, we find that chickens in Madagascar only share a common ancestor with East Africa, which together are genetically closer to South Asian chickens than to those in Southeast Asia. This suggests that the earliest expansion of Austronesian-speaking people across the Indian Ocean did not successfully introduce chickens to Madagascar. Our results further demonstrate the complexity of the translocation history of introduced domesticates in Madagascar. PMID:28405364

  6. Spread of Chikungunya Virus East/Central/South African Genotype in Northeast Brazil.

    PubMed

    Charlys da Costa, Antonio; Thézé, Julien; Komninakis, Shirley Cavalcante Vasconcelos; Sanz-Duro, Rodrigo Lopes; Felinto, Marta Rejane Lemos; Moura, Lúcia Cristina Corrêa; Barroso, Ivoneide Moreira de Oliveira; Santos, Lucineide Eliziario Correia; Nunes, Mardjane Alves de Lemos; Moura, Adriana Avila; Lourenço, José; Deng, Xutao; Delwart, Eric L; Guimarães, Maria Raquel Dos Anjos Silva; Pybus, Oliver G; Sabino, Ester C; Faria, Nuno R

    2017-10-01

    We investigated an outbreak of exanthematous illness in Maceió by using molecular surveillance; 76% of samples tested positive for chikungunya virus. Genetic analysis of 23 newly generated genomes identified the East/Central/South African genotype, suggesting that this lineage has persisted since mid-2014 in Brazil and may spread in the Americas and beyond.

  7. Stratigraphic framework and lake level history of Lake Kivu, East African Rift

    NASA Astrophysics Data System (ADS)

    Wood, Douglas A.; Scholz, Christopher A.

    2017-10-01

    Sediment cores and seismic reflection data acquired from the eastern basin of Lake Kivu, Rwanda reveal extensive limnologic variations due to changes in regional climate and basin structure. The eastern basin of the lake contains a sedimentary wedge which is > 1.5 km in thickness on its western side, and basal sediments are estimated to be at least 1.5 million years old. Sediments are likely to be thicker and older than this in the northern, Congolese basin of the lake. Above the ∼300 m iosbath only a thin layer of Holocene sediments are observed indication that this may have been the lake's high stand prior to that time. There are at least three erosional unconformities interpreted as desiccation or near-desiccation events which are estimated to have occurred at ∼475 ka, ∼100 ka, and ∼20 ka; the two most recent of these low stages likely developed during the African Megadrought and Last Glacial Maximum (LGM) periods. Following the LGM, the water levels rose to form a ∼100 m deep lake with its surface ∼370 m below the current lake level. The lake remained near that level for several thousand years and during this time the Virunga Volcanic Province expanded. At ∼12.2 ka a change to wetter climate conditions rapidly filled the lake to spill out of the Bukavu Bay basin southward toward Lake Tanganyika. Tephra sampled from the cores show that there have been at least 24 large local volcanic events since the early Holocene lake transgression.

  8. First heat flow density determinations from Southeastern Zaïre (Central Africa)

    NASA Astrophysics Data System (ADS)

    Sebagenzi, M. N.; Vasseur, G.; Louis, P.

    1993-05-01

    First heat flow density determinations from southeastern Zaïre are presented. Sites are located in the late Proterozoic metasedimentary cover of the Pan-African belt (600 Ma.). For each individual boreholes, heat flow ranges between 48 and 72 mWm -2. The average value of 62 mW m -2 for the sites is similar to that of 66 mW m -2 observed in Zambia. Both values are higher than what is expected for Pan-African terranes. These heat flow determinations in Shaba province of southeastern Zaïre, together with gravity and seismological observations, support the hypothesis of lithospheric thinning for this area. As already suggested for Zambia, this lithospheric thinning may be associated with a southwestern extension of the East African Rift System from Tanganyika across the central African plateau.

  9. Giant seismites and megablock uplift in the East African Rift: evidence for Late Pleistocene large magnitude earthquakes.

    PubMed

    Hilbert-Wolf, Hannah Louise; Roberts, Eric M

    2015-01-01

    In lieu of comprehensive instrumental seismic monitoring, short historical records, and limited fault trench investigations for many seismically active areas, the sedimentary record provides important archives of seismicity in the form of preserved horizons of soft-sediment deformation features, termed seismites. Here we report on extensive seismites in the Late Quaternary-Recent (≤ ~ 28,000 years BP) alluvial and lacustrine strata of the Rukwa Rift Basin, a segment of the Western Branch of the East African Rift System. We document examples of the most highly deformed sediments in shallow, subsurface strata close to the regional capital of Mbeya, Tanzania. This includes a remarkable, clastic 'megablock complex' that preserves remobilized sediment below vertically displaced blocks of intact strata (megablocks), some in excess of 20 m-wide. Documentation of these seismites expands the database of seismogenic sedimentary structures, and attests to large magnitude, Late Pleistocene-Recent earthquakes along the Western Branch of the East African Rift System. Understanding how seismicity deforms near-surface sediments is critical for predicting and preparing for modern seismic hazards, especially along the East African Rift and other tectonically active, developing regions.

  10. Giant Seismites and Megablock Uplift in the East African Rift: Evidence for Late Pleistocene Large Magnitude Earthquakes

    PubMed Central

    Hilbert-Wolf, Hannah Louise; Roberts, Eric M.

    2015-01-01

    In lieu of comprehensive instrumental seismic monitoring, short historical records, and limited fault trench investigations for many seismically active areas, the sedimentary record provides important archives of seismicity in the form of preserved horizons of soft-sediment deformation features, termed seismites. Here we report on extensive seismites in the Late Quaternary-Recent (≤ ~ 28,000 years BP) alluvial and lacustrine strata of the Rukwa Rift Basin, a segment of the Western Branch of the East African Rift System. We document examples of the most highly deformed sediments in shallow, subsurface strata close to the regional capital of Mbeya, Tanzania. This includes a remarkable, clastic ‘megablock complex’ that preserves remobilized sediment below vertically displaced blocks of intact strata (megablocks), some in excess of 20 m-wide. Documentation of these seismites expands the database of seismogenic sedimentary structures, and attests to large magnitude, Late Pleistocene-Recent earthquakes along the Western Branch of the East African Rift System. Understanding how seismicity deforms near-surface sediments is critical for predicting and preparing for modern seismic hazards, especially along the East African Rift and other tectonically active, developing regions. PMID:26042601

  11. A new brachypterous scarab species, Orphnus longicornis (Coleoptera: Scarabaeidae: Orphninae), from the East African Rift.

    PubMed

    Frolov, Andrey; Akhmetova, Lilia

    2015-11-05

    The Afrotropical Region is the center of the diversity of the scarab beetle genus Orphnus MacLeay, 1819 (Coleoptera: Scarabaeidae: Orphninae), with 94 species occurring from Sahel in the north to Little Karoo in the south (Paulian, 1948; Petrovitz, 1971; Frolov, 2008). The East African Rift is one of the richest regions of the Afrotropics housing more than 20 species of Orphnus (Paulian, 1948; Frolov, 2013), most of which are endemic to this region. Yet the scarab beetle fauna of the East African Rift, and especially the Eastern Arc Mountains, is still inadequately studied. Examination of the material housed in the Museum of Natural History of Humboldt-Universität, Berlin, Germany (ZMHUB), revealed a series of brachypterous Orphnus beetles belonging to an undescribed species. The new species is described and illustrated below.

  12. Genetic diversity and connectivity in the East African giant mud crab Scylla serrata: Implications for fisheries management.

    PubMed

    Rumisha, Cyrus; Huyghe, Filip; Rapanoel, Diary; Mascaux, Nemo; Kochzius, Marc

    2017-01-01

    The giant mud crab Scylla serrata provides an important source of income and food to coastal communities in East Africa. However, increasing demand and exploitation due to the growing coastal population, export trade, and tourism industry are threatening the sustainability of the wild stock of this species. Because effective management requires a clear understanding of the connectivity among populations, this study was conducted to assess the genetic diversity and connectivity in the East African mangrove crab S. serrata. A section of 535 base pairs of the cytochrome oxidase subunit I (COI) gene and eight microsatellite loci were analysed from 230 tissue samples of giant mud crabs collected from Kenya, Tanzania, Mozambique, Madagascar, and South Africa. Microsatellite genetic diversity (He) ranged between 0.56 and 0.6. The COI sequences showed 57 different haplotypes associated with low nucleotide diversity (current nucleotide diversity = 0.29%). In addition, the current nucleotide diversity was lower than the historical nucleotide diversity, indicating overexploitation or historical bottlenecks in the recent history of the studied population. Considering that the coastal population is growing rapidly, East African countries should promote sustainable fishing practices and sustainable use of mangrove resources to protect mud crabs and other marine fauna from the increasing pressure of exploitation. While microsatellite loci did not show significant genetic differentiation (p > 0.05), COI sequences revealed significant genetic divergence between sites on the East coast of Madagascar (ECM) and sites on the West coast of Madagascar, mainland East Africa, as well as the Seychelles. Since East African countries agreed to achieve the Convention on Biological Diversity (CBD) target to protect over 10% of their marine areas by 2020, the observed pattern of connectivity and the measured genetic diversity can serve to provide useful information for designing networks of

  13. Orogen styles in the East African Orogen: A review of the Neoproterozoic to Cambrian tectonic evolution.

    PubMed

    Fritz, H; Abdelsalam, M; Ali, K A; Bingen, B; Collins, A S; Fowler, A R; Ghebreab, W; Hauzenberger, C A; Johnson, P R; Kusky, T M; Macey, P; Muhongo, S; Stern, R J; Viola, G

    2013-10-01

    The East African Orogen, extending from southern Israel, Sinai and Jordan in the north to Mozambique and Madagascar in the south, is the world́s largest Neoproterozoic to Cambrian orogenic complex. It comprises a collage of individual oceanic domains and continental fragments between the Archean Sahara-Congo-Kalahari Cratons in the west and Neoproterozoic India in the east. Orogen consolidation was achieved during distinct phases of orogeny between ∼850 and 550 Ma. The northern part of the orogen, the Arabian-Nubian Shield, is predominantly juvenile Neoproterozoic crust that formed in and adjacent to the Mozambique Ocean. The ocean closed during a protracted period of island-arc and microcontinent accretion between ∼850 and 620 Ma. To the south of the Arabian Nubian Shield, the Eastern Granulite-Cabo Delgado Nappe Complex of southern Kenya, Tanzania and Mozambique was an extended crust that formed adjacent to theMozambique Ocean and experienced a ∼650-620 Ma granulite-facies metamorphism. Completion of the nappe assembly around 620 Ma is defined as the East African Orogeny and was related to closure of the Mozambique Ocean. Oceans persisted after 620 Ma between East Antarctica, India, southern parts of the Congo-Tanzania-Bangweulu Cratons and the Zimbabwe-Kalahari Craton. They closed during the ∼600-500 Ma Kuungan or Malagasy Orogeny, a tectonothermal event that affected large portions of southern Tanzania, Zambia, Malawi, Mozambique, Madagascar and Antarctica. The East African and Kuungan Orogenies were followed by phases of post-orogenic extension. Early ∼600-550 Ma extension is recorded in the Arabian-Nubian Shield and the Eastern Granulite-Cabo Delgado Nappe Complex. Later ∼550-480 Ma extension affected Mozambique and southern Madagascar. Both extension phases, although diachronous,are interpreted as the result of lithospheric delamination. Along the strike of the East African Orogen, different geodynamic settings resulted in the evolution

  14. Orogen styles in the East African Orogen: A review of the Neoproterozoic to Cambrian tectonic evolution

    NASA Astrophysics Data System (ADS)

    Fritz, H.; Abdelsalam, M.; Ali, K. A.; Bingen, B.; Collins, A. S.; Fowler, A. R.; Ghebreab, W.; Hauzenberger, C. A.; Johnson, P. R.; Kusky, T. M.; Macey, P.; Muhongo, S.; Stern, R. J.; Viola, G.

    2013-10-01

    The East African Orogen, extending from southern Israel, Sinai and Jordan in the north to Mozambique and Madagascar in the south, is the world´s largest Neoproterozoic to Cambrian orogenic complex. It comprises a collage of individual oceanic domains and continental fragments between the Archean Sahara-Congo-Kalahari Cratons in the west and Neoproterozoic India in the east. Orogen consolidation was achieved during distinct phases of orogeny between ∼850 and 550 Ma. The northern part of the orogen, the Arabian-Nubian Shield, is predominantly juvenile Neoproterozoic crust that formed in and adjacent to the Mozambique Ocean. The ocean closed during a protracted period of island-arc and microcontinent accretion between ∼850 and 620 Ma. To the south of the Arabian Nubian Shield, the Eastern Granulite-Cabo Delgado Nappe Complex of southern Kenya, Tanzania and Mozambique was an extended crust that formed adjacent to theMozambique Ocean and experienced a ∼650-620 Ma granulite-facies metamorphism. Completion of the nappe assembly around 620 Ma is defined as the East African Orogeny and was related to closure of the Mozambique Ocean. Oceans persisted after 620 Ma between East Antarctica, India, southern parts of the Congo-Tanzania-Bangweulu Cratons and the Zimbabwe-Kalahari Craton. They closed during the ∼600-500 Ma Kuungan or Malagasy Orogeny, a tectonothermal event that affected large portions of southern Tanzania, Zambia, Malawi, Mozambique, Madagascar and Antarctica. The East African and Kuungan Orogenies were followed by phases of post-orogenic extension. Early ∼600-550 Ma extension is recorded in the Arabian-Nubian Shield and the Eastern Granulite-Cabo Delgado Nappe Complex. Later ∼550-480 Ma extension affected Mozambique and southern Madagascar. Both extension phases, although diachronous,are interpreted as the result of lithospheric delamination. Along the strike of the East African Orogen, different geodynamic settings resulted in the evolution of

  15. Towards the Social and Economic Promotion of Rural Women in Tanzania

    ERIC Educational Resources Information Center

    Kokuhirwa, Hilda

    1975-01-01

    The report describes the changing image of women in rural Tanzania and the various agencies responsible for their social, economic, cultural, and political promotion in rural areas, including the Tanganyika African National Union (TANU), and the Union of Women in Tanganyika (UWT). (LH)

  16. Predicting East African spring droughts using Pacific and Indian Ocean sea surface temperature indices

    NASA Astrophysics Data System (ADS)

    Funk, C.; Hoell, A.; Shukla, S.; Bladé, I.; Liebmann, B.; Roberts, J. B.; Robertson, F. R.; Husak, G.

    2014-12-01

    In eastern East Africa (the southern Ethiopia, eastern Kenya and southern Somalia region), poor boreal spring (long wet season) rains in 1999, 2000, 2004, 2007, 2008, 2009, and 2011 contributed to severe food insecurity and high levels of malnutrition. Predicting rainfall deficits in this region on seasonal and decadal time frames can help decision makers implement disaster risk reduction measures while guiding climate-smart adaptation and agricultural development. Building on recent research that links more frequent East African droughts to a stronger Walker circulation, resulting from warming in the Indo-Pacific warm pool and an increased east-to-west sea surface temperature (SST) gradient in the western Pacific, we show that the two dominant modes of East African boreal spring rainfall variability are tied to SST fluctuations in the western central Pacific and central Indian Ocean, respectively. Variations in these two rainfall modes can thus be predicted using two SST indices - the western Pacific gradient (WPG) and central Indian Ocean index (CIO), with our statistical forecasts exhibiting reasonable cross-validated skill (rcv ≈ 0.6). In contrast, the current generation of coupled forecast models show no skill during the long rains. Our SST indices also appear to capture most of the major recent drought events such as 2000, 2009 and 2011. Predictions based on these simple indices can be used to support regional forecasting efforts and land surface data assimilations to help inform early warning and guide climate outlooks.

  17. Multi-model trends in East African rainfall associated with increased CO2

    NASA Astrophysics Data System (ADS)

    McHugh, Maurice J.

    2005-01-01

    Nineteen coupled ocean-atmosphere general circulation models participating in the Coupled Model Intercomparison Program (CMIP) were used to analyze future rainfall conditions over East Africa under enhanced CO2 conditions. 80 year control runs of these models indicated that four models produced mean annual rainfall distributions closely resembling climatological means and all four models had normalized root mean square errors well within the bounds of observed variability. East African (10°N-20°S, 25°-50°E) rainfall data from transient 80 year experiments which featured CO2 increases of 1% per year were compared with 80 year control simulations. Results indicate enhanced annual and seasonal rainfall rates, and increased extreme wet period frequency. These results indicate that East Africa may face a future in which mosquito-borne diseases such as malaria and Rift Valley fever proliferate resulting from increased CO2.

  18. Pan-African granulites of central Dronning Maud Land and Mozambique: A comparison within the East-African-Antarctic orogen

    USGS Publications Warehouse

    Engvik, A.K.; Elevevold, S.; Jacobs, J.; Tveten, E.; de Azevedo, S.; Njange, F.

    2007-01-01

    Granulite-facies metamorphism is extensively reported in Late Neoproterozoic/Early Palaeozoic time during formation of the East-African-Antarctic orogen (EAAO). Metamorphic data acquired from the Pan-African orogen of central Dronning Maud Land (cDML) are compared with data from northern Mozambique. The metamorphic rocks of cDML are characterised by Opx±Grt-bearing gneisses and Sil+Kfs-bearing metapelites which indicate medium-P granulite-facies metamorphism. Peak conditions, which are estimated to 800-900ºC at pressures up to 1.0 GPa, were followed by near-isothermal decompression during late Pan-African extension and exhumation. Granulite-facies lithologies are widespread in northern Mozambique, and Grt+Cpx-bearing assemblages show that high-P granulite-facies conditions with PT reaching 1.55 GPa and 900ºC were reached during the Pan-African orogeny. Garnet is replaced by symplectites of Pl+Opx+Mag indicating isothermal decompression, and the subsequent formation of Pl+amphibole-coronas suggests cooling into amphibolite facies. It is concluded that high-T metamorphism was pervasive in EAAO in Late Neoproterozoic/Early Paleozoic time, strongly overprinting evidences of earlier metamorphic assemblages.

  19. Evidence for a Nascent Rift in South Sudan: Westward Extension of the East African Rift System?

    NASA Astrophysics Data System (ADS)

    Maceira, M.; Van Wijk, J. W.; Coblentz, D. D.; Modrak, R. T.

    2013-12-01

    Joint inversion of seismic and gravity data of eastern Africa reveals a low seismic wave velocity arm stretching from the southern Main Ethiopian rift westward in an east-west direction that has not been noticed in earlier work. The zone of low velocities is located in the upper mantle and is not overlain by a known structural rift expression. We analyzed the local pattern of seismicity and the stresses in the African plate to interpret this low velocity arm. The zone of low velocities is located within the Central African Fold Belt, which dissects the northern and southern portions of the African continent. It is seismically active with small to intermediate sized earthquakes occurring in the crust. Seven earthquake solutions indicate (oblique) normal faulting and low-angle normal faulting with a NS to NNW-SSE opening direction, as well as strike-slip faulting. This pattern of deformation is typically associated with rifting. The present day stress field in northeastern Africa reveals a tensional state of stress at the location of the low velocity arm with an opening direction that corresponds to the earthquake data. We propose that the South Sudan low velocity zone and seismic center are part of an undeveloped, nascent rift arm. The arm stretches from the East African Rift system westward.

  20. Preliminary Nearshore Sedimentation Rate Analysis of the Tuungane Project Northern Mahale Conservation Area, Lake Tanganyika (Tanzania)

    NASA Astrophysics Data System (ADS)

    Smiley, R. A.; McGlue, M. M.; Yeager, K. M.; Soreghan, M. J.; Lucas, J.; Kimirei, I.; Mbonde, A.; Limbu, P.; Apse, C.

    2017-12-01

    The combined effects of climate change, overfishing, and sediment pollution are altering Lake Tanganyika's littoral fisheries in profoundly negative ways. One method for conserving critical fish resources and safeguarding biodiversity in Lake Tanganyika is by establishing small-scale nearshore protected zones, which can be administrated by lakeshore villagers organized into beach management units (BMUs). Each BMU endeavors to manage offshore "no-catch" protected zones, prohibit the use of illegal fishing gear, and promote sustainable agriculture that abates erosion in the lake watershed, in order to mitigate sediment pollution in the lake. We adopted a limnogeological approach to assist in characterizing the littoral zone associated with BMUs in the northern Mahale region of Lake Tanganyika (Tanzania), a critical conservation area for the Nature Conservancy's Tuungane Project (https://www.nature.org/ourinitiatives/regions/africa/wherewework/tuungane-project.xml). We hypothesized that BMUs with heavy onshore agricultural activity would experience relatively high offshore sedimentation rates, due to enhanced sediment-laden runoff in the wet season. Such changes are predicted to alter benthic substrates and degrade habitat available for fish spawning. We mapped bathymetry and sediment types along a 29 km2 area of the littoral zone using high-resolution geophysical tools, and assessed short-term sedimentation rates using sediment cores and radionuclide geochronology (210Pb). Initial results from 210Pb analyses show that sedimentation rates at the mud-line ( 85-100 m water depth) are relatively slow but spatially variable in the northern Mahale area. Offshore of the Kalilani village BMU, linear sedimentation rates are 0.50 mm/yr. By contrast, sedimentation rates offshore from the Igualula village BMU are 0.90-1.30 mm/yr. Higher sedimentation rates near Igualula are consistent with greater sediment inputs from the nearby Lagosa River and its watershed, which has been

  1. Total Motion Across the East African Rift Viewed From the Southwest Indian Ridge

    NASA Astrophysics Data System (ADS)

    Royer, J.; Gordon, R. G.

    2005-05-01

    The Nubian plate is known to have been separating from the Somalian plate along the East African Rift since Oligocene time. Recent works have shown that the spreading rates and spreading directions since 11 Ma along the Southwest Indian Ridge (SWIR) record Nubia-Antarctica motion west of the Andrew Bain Fracture Zone complex (ABFZ; between 25E and 35E) and Somalia-Antarctica motion east of it. Nubia-Somalia motion can be determined by differencing Nubia-Antarctica and Somalia-Antarctica motion. To estimate the total motion across the East African Rift, we estimated and differenced Nubia-Antarctica motion and Somalia-Antarctica motion for times that preceded the initiation of Nubia-Somalia motion. We analyze anomalies 24n.3o (53 Ma), 21o (48 Ma), 18o (40 Ma) and 13o (34 Ma). Preliminary results show that the poles of the finite rotations that describe the Nubia-Somalia motions cluster near 30E, 42S. Angles of rotation range from 2.7 to 4.0 degrees. The uncertainty regions are large. The lower estimate predicts a total extension of 245 km at the latitude of the Ethiopian rift (41E, 9N) in a direction N104, perpendicular to the mean trend of the rift. Assuming an age of 34 Ma for the initiation of rifting, the average rate of motion would be 7 mm/a, near the 9 mm/a deduced from present-day geodetic measurements [e.g. synthesis of Fernandes et al., 2004]. Although these results require further analysis, particularly on the causes of the large uncertainties, they represent the first independent estimate of the total extension across the rift. Among other remaining questions are the following: How significant are the differences between these estimates and those for younger chrons (5 or 6 ; respectively 11 and 20 Ma), i.e. is the start of extension datable? Is the region east of the ABFZ part of the Somalian plate or does it form a distinct component plate of Somalia, as postulated by Hartnady (2004)? How has motion between two or more component plates within the African

  2. Association between climate variability and malaria epidemics in the East African highlands.

    PubMed

    Zhou, Guofa; Minakawa, Noboru; Githeko, Andrew K; Yan, Guiyun

    2004-02-24

    The causes of the recent reemergence of Plasmodium falciparum epidemic malaria in the East African highlands are controversial. Regional climate changes have been invoked as a major factor; however, assessing the impact of climate in malaria resurgence is difficult due to high spatial and temporal climate variability and the lack of long-term data series on malaria cases from different sites. Climate variability, defined as short-term fluctuations around the mean climate state, may be epidemiologically more relevant than mean temperature change, but its effects on malaria epidemics have not been rigorously examined. Here we used nonlinear mixed-regression model to investigate the association between autoregression (number of malaria outpatients during the previous time period), seasonality and climate variability, and the number of monthly malaria outpatients of the past 10-20 years in seven highland sites in East Africa. The model explained 65-81% of the variance in the number of monthly malaria outpatients. Nonlinear and synergistic effects of temperature and rainfall on the number of malaria outpatients were found in all seven sites. The net variance in the number of monthly malaria outpatients caused by autoregression and seasonality varied among sites and ranged from 18 to 63% (mean=38.6%), whereas 12-63% (mean=36.1%) of variance is attributed to climate variability. Our results suggest that there was a high spatial variation in the sensitivity of malaria outpatient number to climate fluctuations in the highlands, and that climate variability played an important role in initiating malaria epidemics in the East African highlands.

  3. Current kinematics and dynamics of Africa and the East African Rift System

    NASA Astrophysics Data System (ADS)

    Stamps, D. S.; Flesch, L. M.; Calais, E.; Ghosh, A.

    2014-06-01

    Although the East African Rift System (EARS) is an archetype continental rift, the forces driving its evolution remain debated. Some contend buoyancy forces arising from gravitational potential energy (GPE) gradients within the lithosphere drive rifting. Others argue for a major role of the diverging mantle flow associated with the African Superplume. Here we quantify the forces driving present-day continental rifting in East Africa by (1) solving the depth averaged 3-D force balance equations for 3-D deviatoric stress associated with GPE, (2) inverting for a stress field boundary condition that we interpret as originating from large-scale mantle tractions, (3) calculating dynamic velocities due to lithospheric buoyancy forces, lateral viscosity variations, and velocity boundary conditions, and (4) calculating dynamic velocities that result from the stress response of horizontal mantle tractions acting on a viscous lithosphere in Africa and surroundings. We find deviatoric stress associated with lithospheric GPE gradients are ˜8-20 MPa in EARS, and the minimum deviatoric stress resulting from basal shear is ˜1.6 MPa along the EARS. Our dynamic velocity calculations confirm that a force contribution from GPE gradients alone is sufficient to drive Nubia-Somalia divergence and that additional forcing from horizontal mantle tractions overestimates surface kinematics. Stresses from GPE gradients appear sufficient to sustain present-day rifting in East Africa; however, they are lower than the vertically integrated strength of the lithosphere along most of the EARS. This indicates additional processes are required to initiate rupture of continental lithosphere, but once it is initiated, lithospheric buoyancy forces are enough to maintain rifting.

  4. Shaded Relief with Height as Color, Virunga and Nyiragongo Volcanoes and the East African Rift Valley

    NASA Image and Video Library

    2002-07-11

    Volcanic, tectonic, erosional and sedimentary landforms are all evident in this comparison of two elevation models of a region along the East African Rift at Lake Kivu. The area shown covers parts of Congo, Rwanda and Uganda.

  5. Orogen styles in the East African Orogen: A review of the Neoproterozoic to Cambrian tectonic evolution☆

    PubMed Central

    Fritz, H.; Abdelsalam, M.; Ali, K.A.; Bingen, B.; Collins, A.S.; Fowler, A.R.; Ghebreab, W.; Hauzenberger, C.A.; Johnson, P.R.; Kusky, T.M.; Macey, P.; Muhongo, S.; Stern, R.J.; Viola, G.

    2013-01-01

    The East African Orogen, extending from southern Israel, Sinai and Jordan in the north to Mozambique and Madagascar in the south, is the world́s largest Neoproterozoic to Cambrian orogenic complex. It comprises a collage of individual oceanic domains and continental fragments between the Archean Sahara–Congo–Kalahari Cratons in the west and Neoproterozoic India in the east. Orogen consolidation was achieved during distinct phases of orogeny between ∼850 and 550 Ma. The northern part of the orogen, the Arabian–Nubian Shield, is predominantly juvenile Neoproterozoic crust that formed in and adjacent to the Mozambique Ocean. The ocean closed during a protracted period of island-arc and microcontinent accretion between ∼850 and 620 Ma. To the south of the Arabian Nubian Shield, the Eastern Granulite–Cabo Delgado Nappe Complex of southern Kenya, Tanzania and Mozambique was an extended crust that formed adjacent to theMozambique Ocean and experienced a ∼650–620 Ma granulite-facies metamorphism. Completion of the nappe assembly around 620 Ma is defined as the East African Orogeny and was related to closure of the Mozambique Ocean. Oceans persisted after 620 Ma between East Antarctica, India, southern parts of the Congo–Tanzania–Bangweulu Cratons and the Zimbabwe–Kalahari Craton. They closed during the ∼600–500 Ma Kuungan or Malagasy Orogeny, a tectonothermal event that affected large portions of southern Tanzania, Zambia, Malawi, Mozambique, Madagascar and Antarctica. The East African and Kuungan Orogenies were followed by phases of post-orogenic extension. Early ∼600–550 Ma extension is recorded in the Arabian–Nubian Shield and the Eastern Granulite–Cabo Delgado Nappe Complex. Later ∼550–480 Ma extension affected Mozambique and southern Madagascar. Both extension phases, although diachronous,are interpreted as the result of lithospheric delamination. Along the strike of the East African Orogen, different geodynamic settings

  6. Risk and presenting features of prostate cancer amongst African-Caribbean, South Asian and European men in North-east London.

    PubMed

    Chinegwundoh, Frank; Enver, Mohamed; Lee, Angela; Nargund, Vinod; Oliver, Tim; Ben-Shlomo, Yoav

    2006-12-01

    To determine whether there are ethnic differences in the incidence and presenting features of all patients with prostate cancer presenting in North-east London, UK. All newly diagnosed men with prostate cancer between 1999 and 2000 who were resident in the East London and City Health Authority were identified from various sources. Key clinical features were extracted from hospital records. The age-adjusted incidence rates for European, South Asian and African-Caribbean patients were calculated using census denominator data. For men aged >50 years the annual age-adjusted incidence rates (95% confidence interval) were 213 (186-240), 647 (504-789) and 199 (85-310) for the European, African-Caribbean and South Asian patients, respectively. African-Caribbean men had a three times greater risk (risk ratio 3.07, 2.40-3.93, P < 0.001) than European men. South Asian men had a lower risk of prostate cancer but this could have been compatible with chance. There was no evidence of marked ethnic differences for prostate-specific antigen levels, clinical staging and Gleason scores. The greater risk of prostate cancer for African-Caribbean men in South-east England is consistent with data from the USA and the Caribbean. Future work needs to determine whether this risk differs according to country of origin, and which genetic and/or environmental risk factors might be important in explaining these observations.

  7. Mainstreaming biodiversity and wildlife management into climate change policy frameworks in selected east and southern African countries

    PubMed Central

    Nhamo, Godwell

    2016-01-01

    The Rio+20 outcomes document, the Future We Want, enshrines green economy as one of the platforms to attain sustainable development and calls for measures that seek to address climate change and biodiversity management. This paper audits climate change policies from selected east and southern African countries to determine the extent to which climate change legislation mainstreams biodiversity and wildlife management. A scan of international, continental, regional and national climate change policies was conducted to assess whether they include biodiversity and/or wildlife management issues. The key finding is that many climate change policy–related documents, particularly the National Adaptation Programme of Actions (NAPAs), address threats to biodiversity and wildlife resources. However, international policies like the United Nations Framework Convention on Climate Change and Kyoto Protocol do not address the matter under deliberation. Regional climate change policies such as the East African Community, Common Market for Eastern and Southern Africa and African Union address biodiversity and/or wildlife issues whilst the Southern African Development Community region does not have a stand-alone policy for climate change. Progressive countries like Rwanda, Uganda, Tanzania and Zambia have recently put in place detailed NAPAs which are mainstream responsive strategies intended to address climate change adaptation in the wildlife sector.

  8. Cenozoic extension, volcanism and plateau uplift in eastern Africa and the African Superplume

    NASA Astrophysics Data System (ADS)

    Nyblade, A.; O'Donnell, J.; Mulibo, G. D.; Adams, A. N.

    2013-12-01

    Recent body and surface wave studies combine to image mantle velocity structure to a depth of 1200 km beneath eastern Africa using teleseismic earthquake data recorded by the AfricaArray East African Seismic Experiment in conjunction with permanent stations and previously deployed temporary stations. The combined network spans Kenya, Uganda, Tanzania, Zambia and Malawi. The 3-D shear wave velocity structure of the uppermost mantle was imaged using fundamental-mode Rayleigh wave phase velocities measured at periods ranging from 20 to 182 s, subsequently inverted for shear velocity structure. When considered in conjunction with mapped seismicity, the shear velocity model supports a secondary western rift branch striking southwestwards from Lake Tanganyika, likely exploiting the relatively weak lithosphere of the southern Kibaran Belt between the Bangweulu Block and the Congo Craton. In eastern Tanzania a low-velocity region suggests that the eastern rift branch trends southeastwards offshore eastern Tanzania coincident with the purported location of the northern margin of the proposed Ruvuma microplate. The results suggest that existing lithospheric structures exert a significant governing influence on rift development. Sub-lithospheric mantle wave speed variations extending to a depth of 1200 km were tomographically imaged from the inversion of P and S wave relative arrival time residuals. The images shows a low wave speed anomaly (LWA) well developed at shallow depths (100-200 km) beneath the Eastern and Western branches of the rift system and northwestern Zambia, and a fast wave speed anomaly at depths greater than 350 km beneath the central and northern parts of the East African Plateau and the eastern and central parts of Zambia. At depths below 350 km the LWA is most prominent under the central and southern parts of the East African Plateau and dips to the southwest beneath northern Zambia, extending to a depth of at least 900 km. The amplitude of the LWA is

  9. Middle East and North African Health Informatics Association (MENAHIA): Building Sustainable Collaboration.

    PubMed

    Al-Shorbaji, Najeeb; Househ, Mowafa; Taweel, Adel; Alanizi, Abdullah; Mohammed, Bennani Othmani; Abaza, Haitham; Bawadi, Hala; Rasuly, Hamayon; Alyafei, Khalid; Fernandez-Luque, Luis; Shouman, Mohamed; El-Hassan, Osama; Hussein, Rada; Alshammari, Riyad; Mandil, Salah; Shouman, Sarah; Taheri, Shahrad; Emara, Tamer; Dalhem, Wasmiya; Al-Hamdan, Zaid; Serhier, Zineb

    2018-04-22

    There has been a growing interest in Health Informatics applications, research, and education within the Middle East and North African Region over the past twenty years. People of this region share similar cultural and religious values, primarily speak the Arabic language, and have similar health care related issues, which are in dire need of being addressed. Health Informatics efforts, organizations, and initiatives within the region have been largely under-represented within, but not ignored by, the International Medical Informatics Association (IMIA). Attempts to create bonds and collaboration between the different organizations of the region have remained scattered, and often, resulted in failure despite the fact that the need for a united health informatics collaborative within the region has never been more crucial than today. During the 2017 MEDINFO, held in Hangzhou, China, a new organization, the Middle East and North African Health Informatics Association (MENAHIA) was conceived as a regional non-governmental organization to promote and facilitate health informatics uptake within the region endorsing health informatics research and educational initiatives of the 22 countries represented within the region. This paper provides an overview of the collaboration and efforts to date in forming MENAHIA and displays the variety of initiatives that are already occurring within the MENAHIA region, which MENAHIA will help, endorse, support, share, and improve within the international forum of health informatics. Georg Thieme Verlag KG Stuttgart.

  10. Use of Machine Learning Techniques for Iidentification of Robust Teleconnections to East African Rainfall Variability in Observations and Models

    NASA Technical Reports Server (NTRS)

    Roberts, J. Brent; Robertson, Franklin R.; Funk, Chris

    2014-01-01

    Providing advance warning of East African rainfall variations is a particular focus of several groups including those participating in the Famine Early Warming Systems Network. Both seasonal and long-term model projections of climate variability are being used to examine the societal impacts of hydrometeorological variability on seasonal to interannual and longer time scales. The NASA / USAID SERVIR project, which leverages satellite and modeling-based resources for environmental decision making in developing nations, is focusing on the evaluation of both seasonal and climate model projections to develop downscaled scenarios for using in impact modeling. The utility of these projections is reliant on the ability of current models to capture the embedded relationships between East African rainfall and evolving forcing within the coupled ocean-atmosphere-land climate system. Previous studies have posited relationships between variations in El Niño, the Walker circulation, Pacific decadal variability (PDV), and anthropogenic forcing. This study applies machine learning methods (e.g. clustering, probabilistic graphical model, nonlinear PCA) to observational datasets in an attempt to expose the importance of local and remote forcing mechanisms of East African rainfall variability. The ability of the NASA Goddard Earth Observing System (GEOS5) coupled model to capture the associated relationships will be evaluated using Coupled Model Intercomparison Project Phase 5 (CMIP5) simulations.

  11. Askaris, Asymmetry, and Small Wars: Operational Art and the German East African Campaign, 1914-1918

    DTIC Science & Technology

    2001-02-01

    Art moves through 8 the realm of the possible, but is restrained by the laws of science . The Pharaohs created some of the most awe inspiring...... Art and the German East African Campaign, 1914-1918 Unclassified 5a. CONTRACT NUMBER 5b. GRANT NUMBER 5c. PROGRAM ELEMENT NUMBER 6. AUTHOR(S) Adgie

  12. THE EAST AFRICAN MEDICAL JOURNAL: ITS HISTORY AND CONTRIBUTION TO REGIONAL MALARIA RESEARCH DURING THE LAST 75 YEARS

    PubMed Central

    OMBONGI, K S; DOBSON, M; MALOWANY, M; SNOW, R W

    2013-01-01

    SUMMARY Since its inception seventy five years ago, the East African Medical Journal has provided an uninterrupted forum through which medical practitioners and scientists could publish their research. Although the EAMJ was initially prepared for an audience of colonial medical officers, by the 1930s the journal expanded to include subscription and submissions from Northern Rhodesia (now Zimbabwe) and West Africa. Our review begins with a history of the journal’s production, exploring the shifts in editorial composition. We then focus more directly on a discussion of papers and editorials on malaria, a disease that continues to challenge the region of East Africa. Our review highlights the importance of the journal’s commitment to publications on this major health problem within the East African environment. Of particular interest, our review shows that many of today’s concerns, debates and recommendations for control or treatment of malaria in East Africa were discussed and debated in earlier issues of the EAMJ. Medical policy for the region with regard to malaria will benefit from revisiting previous volumes of the EAMJ. These contributions will ensure the journal a significant place in the world of research publications for the coming seventy five years. PMID:24137043

  13. Sm-Nd and U-Pb isotopic constraints for crustal evolution during Late Neoproterozic from rocks of the Schirmacher Oasis, East Antarctica: geodynamic development coeval with the East African Orogeny

    USGS Publications Warehouse

    Ravikant, V.; Laux, J.H.; Pimentel, M.M.

    2007-01-01

    Recent post-750 Ma continental reconstructions constrain models for East African Orogeny formation and also the scattered remnants of ~640 Ma granulites, whose genesis is controversial. One such Neoproterozoic granulite belt is the Schirmacher Oasis in East Antarctica, isolated from the distinctly younger Pan-African orogen to the south in the central Droning Maud Land. To ascertain the duration of granulite-facies events in these remnants, garnet Sm-Nd and monazite and titanite U-Pb IDTIMS geochronology was carried out on a range of metamorphic rocks. Garnet formation ages from a websterite enclave and gabbro were 660±48 Ma and 587±9 Ma respectively, and those from Stype granites were 598±4 Ma and 577±4 Ma. Monazites from metapelite and metaquartzite yielded lower intercept UPb ages of 629±3 Ma and 639±5 Ma, respectively. U-Pb titanite age from calcsilicate gneiss was 580±5 Ma. These indicate peak metamorphism to have occurred between 640 and 630 Ma, followed by near isobaric cooling to ~580 Ma. Though an origin as an exotic terrane from the East African Orogen cannot be discounted, from the present data there is a greater likelihood that Mesoproterozoic microplate collision between Maud orogen and a northerly Lurio-Nampula block resulted in formation of these granulite belt(s).

  14. High prevalence of asymptomatic vitamin D and iron deficiency in East African immigrant children and adolescents living in a temperate climate

    PubMed Central

    McGillivray, George; Skull, Susan A; Davie, Gabrielle; Kofoed, Sarah E; Frydenberg, Alexis; Rice, James; Cooke, Regina; Carapetis, Jonathan R

    2007-01-01

    Objectives Vitamin D deficiency (VDD) is common in immigrant children with increased skin pigmentation living in higher latitudes. We assessed the pattern of and risk factors for VDD in immigrant East African children living in Melbourne (latitude 37°49′ South). Study design A prospective survey of 232 East African children attending a clinic in Melbourne. Data were collected by questionnaire, medical assessment and laboratory tests. Results Low 25‐hydroxyvitamin D (25‐OHD) levels (<50 nmol/l) occurred in 87% of children, and VDD (25‐OHD <25 nmol/l) in 44%. Risk factors included age <5 years, female gender, increased time in Australia, decreased daylight exposure and winter/spring season. Anaemia (20%), vitamin A deficiency (20%) and iron deficiency (19%) were also identified. Conclusions Asymptomatic VDD is common in East African immigrant children residing at a temperate latitude. Risk factors for VDD limit endogenous vitamin D production. Screening of immigrant children with increased skin pigmentation for VDD, anaemia, iron and vitamin A deficiency is appropriate. VDD in adolescent females identifies an increased risk of future infants with VDD. PMID:17768148

  15. Phylogeographic reconstruction of African yellow fever virus isolates indicates recent simultaneous dispersal into east and west Africa.

    PubMed

    Beck, Andrew; Guzman, Hilda; Li, Li; Ellis, Brett; Tesh, Robert B; Barrett, Alan D T

    2013-01-01

    Yellow fever virus (YFV) is a mosquito-borne flavivirus that is a major public health problem in tropical areas of Africa and South America. There have been detailed studies on YFV ecology in West Africa and South America, but current understanding of YFV circulation on the African continent is incomplete. This inadequacy is especially notable for East and Central Africa, for which the unpredictability of human outbreaks is compounded by limitations in both historical and present surveillance efforts. Sparse availability of nucleotide sequence data makes it difficult to investigate the dispersal of YFV in these regions of the continent. To remedy this, we constructed Bayesian phylogenetic and geographic analyses utilizing 49 partial genomic sequences to infer the structure of YFV divergence across the known range of the virus on the African continent. Relaxed clock analysis demonstrated evidence for simultaneous divergence of YFV into east and west lineages, a finding that differs from previous hypotheses of YFV dispersal from reservoirs located on edges of the endemic range. Using discrete and continuous geographic diffusion models, we provide detailed structure of YFV lineage diversity. Significant transition links between extant East and West African lineages are presented, implying connection between areas of known sylvatic cycling. The results of demographic modeling reinforce the existence of a stably maintained population of YFV with spillover events into human populations occurring periodically. Geographically distinct foci of circulation are reconstructed, which have significant implications for studies of YFV ecology and emergence of human disease. We propose further incorporation of Bayesian phylogeography into formal GIS analyses to augment studies of arboviral disease.

  16. Reconstructing East African rainfall and Indian Ocean sea surface temperatures over the last centuries using data assimilation

    NASA Astrophysics Data System (ADS)

    Klein, François; Goosse, Hugues

    2018-06-01

    The relationship between the East African rainfall and Indian Ocean sea-surface temperatures (SSTs) is well established. The potential interest of this covariance to improve reconstructions of both variables over the last centuries is examined here. This is achieved through an off-line method of data assimilation based on a particle filter, using hydroclimate-related records at four East African sites (Lake Naivasha, Lake Challa, Lake Malawi and Lake Masoko) and SSTs-related records at six oceanic sites spread over the Indian Ocean to constrain the Last Millennium Ensemble of simulations performed by CESM1. Skillful reconstructions of the Indian SSTs and East African rainfall can be obtained based on the assimilation of only one of these variables, when assimilating pseudo-proxy data deduced from the model CESM1. The skill of these reconstructions increases with the number of particles selected in the particle filter, although the improvement becomes modest beyond 99 particles. When considering a more realistic framework, the skill of the reconstructions is strongly deteriorated because of the model biases and the uncertainties of the real proxy-based reconstructions. However, it is still possible to obtain a skillful reconstruction of SSTs over most of the Indian Ocean only based on the assimilation of the six SST-related proxy records selected, as far as a local calibration is applied at all individual sites. This underlines once more the critical role of an adequate integration of the signal inferred from proxy records into the climate models for reconstructions based on data assimilation.

  17. East African weathering dynamics controlled by vegetation-climate feedbacks

    USGS Publications Warehouse

    Ivory, Sarah J.; McGlue, Michael M.; Ellis, Geoffrey S.; Boehlke, Adam; Lézine, Anne-Marie; Vincens, Annie; Cohen, Andrew S.

    2017-01-01

    Tropical weathering has important linkages to global biogeochemistry and landscape evolution in the East African rift. We disentangle the influences of climate and terrestrial vegetation on chemical weathering intensity and erosion at Lake Malawi using a long sediment record. Fossil pollen, microcharcoal, particle size, and mineralogy data affirm that the detrital clays accumulating in deep water within the lake are controlled by feedbacks between climate and hinterland forest composition. Particle-size patterns are also best explained by vegetation, through feedbacks with lake levels, wildfires, and erosion. We develop a new source-to-sink framework that links lacustrine sedimentation to hinterland vegetation in tropical rifts. Our analysis suggests that climate-vegetation interactions and their coupling to weathering/erosion could threaten future food security and has implications for accurately predicting petroleum play elements in continental rift basins.

  18. Hidden biodiversity in an ancient lake: phylogenetic congruence between Lake Tanganyika tropheine cichlids and their monogenean flatworm parasites.

    PubMed

    Vanhove, Maarten P M; Pariselle, Antoine; Van Steenberge, Maarten; Raeymaekers, Joost A M; Hablützel, Pascal I; Gillardin, Céline; Hellemans, Bart; Breman, Floris C; Koblmüller, Stephan; Sturmbauer, Christian; Snoeks, Jos; Volckaert, Filip A M; Huyse, Tine

    2015-09-03

    The stunning diversity of cichlid fishes has greatly enhanced our understanding of speciation and radiation. Little is known about the evolution of cichlid parasites. Parasites are abundant components of biodiversity, whose diversity typically exceeds that of their hosts. In the first comprehensive phylogenetic parasitological analysis of a vertebrate radiation, we study monogenean parasites infecting tropheine cichlids from Lake Tanganyika. Monogeneans are flatworms usually infecting the body surface and gills of fishes. In contrast to many other parasites, they depend only on a single host species to complete their lifecycle. Our spatially comprehensive combined nuclear-mitochondrial DNA dataset of the parasites covering almost all tropheine host species (N = 18), reveals species-rich parasite assemblages and shows consistent host-specificity. Statistical comparisons of host and parasite phylogenies based on distance and topology-based tests demonstrate significant congruence and suggest that host-switching is rare. Molecular rate evaluation indicates that species of Cichlidogyrus probably diverged synchronically with the initial radiation of the tropheines. They further diversified through within-host speciation into an overlooked species radiation. The unique life history and specialisation of certain parasite groups has profound evolutionary consequences. Hence, evolutionary parasitology adds a new dimension to the study of biodiversity hotspots like Lake Tanganyika.

  19. Mapping the Elephants of the 19th Century East African Ivory Trade with a Multi-Isotope Approach

    PubMed Central

    Lee-Thorp, Julia; Collins, Matthew J.; Lane, Paul J.

    2016-01-01

    East African elephants have been hunted for their ivory for millennia but the nineteenth century witnessed strongly escalating demand from Europe and North America. It has been suggested that one consequence was that by the 1880s elephant herds along the coast had become scarce, and to meet demand, trade caravans trekked farther into interior regions of East Africa, extending the extraction frontier. The steady decimation of elephant populations coupled with the extension of trade networks have also been claimed to have triggered significant ecological and socio-economic changes that left lasting legacies across the region. To explore the feasibility of using an isotopic approach to uncover a ‘moving frontier’ of elephant extraction, we constructed a baseline isotope data set (δ13C, δ15N, δ18O and 87Sr/86Sr) for historic East African elephants known to have come from three distinct regions (coastal, Rift Valley, and inland Lakes). Using the isotope results with other climate data and geographical mapping tools, it was possible to characterise elephants from different habitats across the region. This baseline data set was then used to provenance elephant ivory of unknown geographical provenance that was exported from East Africa during the late nineteenth and early twentieth centuries to determine its likely origin. This produced a better understanding of historic elephant geography in the region, and the data have the potential to be used to provenance older archaeological ivories, and to inform contemporary elephant conservation strategies. PMID:27760152

  20. Mapping the Elephants of the 19th Century East African Ivory Trade with a Multi-Isotope Approach.

    PubMed

    Coutu, Ashley N; Lee-Thorp, Julia; Collins, Matthew J; Lane, Paul J

    2016-01-01

    East African elephants have been hunted for their ivory for millennia but the nineteenth century witnessed strongly escalating demand from Europe and North America. It has been suggested that one consequence was that by the 1880s elephant herds along the coast had become scarce, and to meet demand, trade caravans trekked farther into interior regions of East Africa, extending the extraction frontier. The steady decimation of elephant populations coupled with the extension of trade networks have also been claimed to have triggered significant ecological and socio-economic changes that left lasting legacies across the region. To explore the feasibility of using an isotopic approach to uncover a 'moving frontier' of elephant extraction, we constructed a baseline isotope data set (δ13C, δ15N, δ18O and 87Sr/86Sr) for historic East African elephants known to have come from three distinct regions (coastal, Rift Valley, and inland Lakes). Using the isotope results with other climate data and geographical mapping tools, it was possible to characterise elephants from different habitats across the region. This baseline data set was then used to provenance elephant ivory of unknown geographical provenance that was exported from East Africa during the late nineteenth and early twentieth centuries to determine its likely origin. This produced a better understanding of historic elephant geography in the region, and the data have the potential to be used to provenance older archaeological ivories, and to inform contemporary elephant conservation strategies.

  1. The strange case of East African annual fishes: aridification correlates with diversification for a savannah aquatic group?

    PubMed

    Dorn, Alexander; Musilová, Zuzana; Platzer, Matthias; Reichwald, Kathrin; Cellerino, Alessandro

    2014-10-14

    Annual Nothobranchius fishes are distributed in East and Southern Africa and inhabit ephemeral pools filled during the monsoon season. Nothobranchius show extreme life-history adaptations: embryos survive by entering diapause and they are the vertebrates with the fastest maturation and the shortest lifespan. The distribution of Nothobranchius overlaps with the East Africa Rift System. The geological and paleoclimatic history of this region is known in detail: in particular, aridification of East Africa and expansion of grassland habitats started 8 Mya and three humid periods between 3 and 1 Mya are superimposed on the longer-term aridification. These climatic oscillations are thought to have shaped evolution of savannah African mammals. We reconstructed the phylogeny of Nothobranchius and dated the different stages of diversification in relation to these paleoclimatic events. We sequenced one mitochondrial locus and five nuclear loci in 63 specimens and obtained a robust phylogeny. Nothobranchius can be divided in four geographically separated clades whose boundaries largely correspond to the East Africa Rift system. Statistical analysis of dispersal and vicariance identifies a Nilo-Sudan origin with southwards dispersion and confirmed that these four clades are the result of vicariance events In the absence of fossil Nothobranchius, molecular clock was calibrated using more distant outgroups (secondary calibration). This method estimates the age of the Nothobranchius genus to be 8.3 (6.0 - 10.7) My and the separation of the four clades 4.8 (2.7-7.0) Mya. Diversification within the clades was estimated to have started ~3 Mya and most species pairs were estimated to have an age of 0.5-1 My. The mechanism of Nothobranchius diversification was allopatric and driven by geographic isolation. We propose a scenario where diversification of Nothobranchius started in rough coincidence with aridification of East Africa, establishment of grassland habitats and the appearance

  2. Relapsing fever causative agent in Southern Iran is a closely related species to East African borreliae.

    PubMed

    Naddaf, Saied Reza; Ghazinezhad, Behnaz; Kazemirad, Elham; Cutler, Sally Jane

    2017-10-01

    We obtained two blood samples from relapsing fever patients residing in Jask County, Hormozgan Province, southern Iran in 2013. Sequencing of a partial fragment of glpQ from two samples, and further characterization of one of them by analyzing flaB gene, and 16S-23S spacer (IGS) revealed the greatest sequence identity with East African borreliae, Borrelia recurrentis, and Borrelia duttonii, and Borrelia microti from Iran. Phylogenetic analyses of glpQ, flaB, and concatenated sequences (glpQ, flab, and IGS) clustered these sequences amongst East African Relapsing fever borreliae and B. microti from Iran. However, the more discriminatory IGS disclosed a unique 8-bp signature (CAGCCTAA) separating these from B. microti and indeed other relapsing fever borreliae. In southern Iran, relapsing fever cases are mostly from localities in which O. erraticus ticks, the notorious vector of B. microti, prevail. There are chances that this argasid tick serves as a host and vector of several closely related species or ecotypes including the one we identified in the present study. The distribution of this Borrelia species remains to be elucidated, but it is assumed to be endemic to lowland areas of the Hormozgan Province, as well as Sistan va Baluchistan in the southeast and South Khorasan (in Persian: Khorasan-e Jonobi) in the east of Iran. Copyright © 2017 Elsevier GmbH. All rights reserved.

  3. Phylogeographic Reconstruction of African Yellow Fever Virus Isolates Indicates Recent Simultaneous Dispersal into East and West Africa

    PubMed Central

    Beck, Andrew; Guzman, Hilda; Li, Li; Ellis, Brett; Tesh, Robert B.; Barrett, Alan D. T.

    2013-01-01

    Yellow fever virus (YFV) is a mosquito-borne flavivirus that is a major public health problem in tropical areas of Africa and South America. There have been detailed studies on YFV ecology in West Africa and South America, but current understanding of YFV circulation on the African continent is incomplete. This inadequacy is especially notable for East and Central Africa, for which the unpredictability of human outbreaks is compounded by limitations in both historical and present surveillance efforts. Sparse availability of nucleotide sequence data makes it difficult to investigate the dispersal of YFV in these regions of the continent. To remedy this, we constructed Bayesian phylogenetic and geographic analyses utilizing 49 partial genomic sequences to infer the structure of YFV divergence across the known range of the virus on the African continent. Relaxed clock analysis demonstrated evidence for simultaneous divergence of YFV into east and west lineages, a finding that differs from previous hypotheses of YFV dispersal from reservoirs located on edges of the endemic range. Using discrete and continuous geographic diffusion models, we provide detailed structure of YFV lineage diversity. Significant transition links between extant East and West African lineages are presented, implying connection between areas of known sylvatic cycling. The results of demographic modeling reinforce the existence of a stably maintained population of YFV with spillover events into human populations occurring periodically. Geographically distinct foci of circulation are reconstructed, which have significant implications for studies of YFV ecology and emergence of human disease. We propose further incorporation of Bayesian phylogeography into formal GIS analyses to augment studies of arboviral disease. PMID:23516640

  4. Plate Kinematic model of the NW Indian Ocean and derived regional stress history of the East African Margin

    NASA Astrophysics Data System (ADS)

    Tuck-Martin, Amy; Adam, Jürgen; Eagles, Graeme

    2015-04-01

    Starting with the break up of Gondwana, the northwest Indian Ocean and its continental margins in Madagascar, East Africa and western India formed by divergence of the African and Indian plates and were shaped by a complicated sequence of plate boundary relocations, ridge propagation events, and the independent movement of the Seychelles microplate. As a result, attempts to reconcile the different plate-tectonic components and processes into a coherent kinematic model have so far been unsatisfactory. A new high-resolution plate kinematic model has been produced in an attempt to solve these problems, using seafloor spreading data and rotation parameters generated by a mixture of visual fitting of magnetic isochron data and iterative joint inversion of magnetic isochron and fracture zone data. Using plate motion vectors and plate boundary geometries derived from this model, the first-order regional stress pattern was modelled for distinct phases of margin formation. The stress pattern is correlated with the tectono-stratigraphic history of related sedimentary basins. The plate kinematic model identifies three phases of spreading, from the Jurassic to the Paleogene, which resulted in the formation of three main oceanic basins. Prior to these phases, intracontinental 'Karoo' rifting episodes in the late Carboniferous to late Triassic had failed to break up Gondwana, but initiated the formation of sedimentary basins along the East African and West Madagascan margins. At the start of the first phase of spreading (183 to 133 Ma) predominantly NW - SE extension caused continental rifting that separated Madagascar/India/Antarctica from Africa. Maximum horizontal stresses trended perpendicular to the local plate-kinematic vector, and parallel to the rift axes. During and after continental break-up and subsequent spreading, the regional stress regime changed drastically. The extensional stress regime became restricted to the active spreading ridges that in turn adopted trends

  5. Half-precessional climate forcing of Indian Ocean monsoon dynamics on the East African equator

    NASA Astrophysics Data System (ADS)

    Verschuren, D.; Sinninghe Damste, J. S.; Moernaut, J.; Kristen, I.; Fagot, M.; Blaauw, M.; Haug, G. H.; Project Members, C.

    2008-12-01

    The EuroCLIMATE project CHALLACEA produced a detailed multi-proxy reconstruction of the climate history of equatorial East Africa, based on the sediment record of Lake Challa, a 4.2 km2, 92-m deep crater lake on the lower East slope of Mt. Kilimanjaro (Kenya/Tanzania). Relatively stable sedimentation dynamics over the past 25,000 years resulted in a unique combination of high temporal resolution, excellent radiometric (210Pb, 14C) age control, and confidence that recording parameters of the climatic proxy signals extracted from the sediment have remained constant through time. The equatorial (3 deg. S) location of our study site in East Africa, where seasonal migration of convective activity spans the widest latitude range worldwide, produced unique information on how varying rainfall contributions from the northeasterly and southeasterly Indian Ocean monsoons shaped regional climate history. The Challa proxy records for temperature (TEX86) and moisture balance (reflection-seismic stratigraphy and the BIT index of soil bacterial input) uniquely weave together tropical climate variability at orbital and shorter time scales. The temporal pattern of reconstructed moisture balance bears the clear signature of half- precessional insolation forcing of Indian Ocean monsoon dynamics, modified by northern-latitude influence on moisture-balance variation at millennial and century time scales. During peak glacial time (but not immediately before) and the Younger Dryas, NH ice sheet influences overrode local insolation influence on monsoon intensity. After the NH ice sheets had melted and a relatively stable interglacial temperature regime developed, precession-driven summer insolation became the dominant determinant of regional moisture balance, with anti-phased patterns of Holocene hydrological change in the northern and southern (sub)tropics, and a uniquely hybrid pattern on the East African equator. In the last 2-3000 years a series of multi-century droughts with links to

  6. East African discourses on khat and sex.

    PubMed

    Beckerleg, Susan

    2010-12-01

    The study aims to review and analyse the varied East African discourses on the effects of khat use on libido, fertility, transmission of HIV, prostitution and rape. The data were gathered between 2004 and 2009 in Kenya and Uganda. Between 2004 and 2005 across Kenya and Uganda a broad survey approach was adopted, involving identification of and travel to production areas, interviews with producers and consumers in rural and urban settings. In addition, a survey of 300 Ugandan consumers was carried out in late 2004. Between 2007 and 2009, an in-depth study of khat production, trade and consumption was conducted in Uganda. This study also employed a mixture of methods, including key informant interviews participant-observation and a questionnaire survey administered to 210 khat consumers. Khat is associated, by consumers and its detractors alike, with changes in libido and sexual performance. Although there is no evidence to support their claims, detractors of khat use argue that khat causes sexual violence, causes women to enter sex work, and that chewing causes the spread of sexually transmitted diseases, including the HIV virus. In East Africa the discourse on khat and sex has led to consumption of the substances being associated by many people with uncontrolled sexual behaviour. There is no evidence that khat use fuels promiscuity, commercial sex, sexually transmitted diseases or rape. The current discourse on khat and sex touches on all these topics. Local religious and political leaders invoke khat use as a cause of what they argue is a breakdown of morals and social order. In Kenya and Uganda it is women khat consumers who are seen as sexually uncontrolled. In Uganda, the argument is extended even to men: with male khat chewers labelled as prone to commit rape. Copyright © 2010 Elsevier Ireland Ltd. All rights reserved.

  7. Gender attitudes and fertility aspirations among young men in five high fertility East African countries.

    PubMed

    Snow, Rachel C; Winter, Rebecca A; Harlow, Siobán D

    2013-03-01

    The relationship between women's attitudes toward gender equality and their fertility aspirations has been researched extensively, but few studies have explored the same associations among men. Using recent Demographic and Health Survey data from five high fertility East African countries, we examine the association between young men's gender attitudes and their ideal family size. Whereas several DHS gender attitude responses were associated with fertility aspirations in select countries, men's greater tolerance of wife beating was consistently associated with higher fertility aspirations across all countries, independent of education, income, or religion. Our findings highlight the overlapping values of male authority within marriage and aspirations for large families among young adult males in East Africa. Total lifetime fertility in East Africa remains among the highest worldwide: thus, governments in the region seeking to reduce fertility may need to explicitly scrutinize and address the reproduction of prevailing masculine values. © 2013 The Population Council, Inc.

  8. Two phases of the Holocene East African Humid Period: Inferred from a high-resolution geochemical record off Tanzania

    NASA Astrophysics Data System (ADS)

    Liu, Xiting; Rendle-Bühring, Rebecca; Kuhlmann, Holger; Li, Anchun

    2017-02-01

    During the Holocene, the most notably climatic change across the African continent is the African Humid Period (AHP), however the pace and primary forcing for this pluvial condition is still ambiguous, particularly in East Africa. We present a high-resolution marine sediment record off Tanzania to provide insights into the climatic conditions of inland East Africa during the Holocene. Major element ratios (i.e., log-ratios of Fe/Ca and Ti/Ca), derived from X-Ray Fluorescence scanning, have been employed to document variations in humidity in East Africa. Our results show that the AHP is represented by two humid phases: an intense humid period from the beginning of the Holocene to 8 ka (AHP I); and a moderate humid period spanning from 8 to 5.5 ka (AHP II). On the basis of our geochemical record and regime detection, the termination of the AHP initiated at 5.5 ka and ceased around 3.5 ka. Combined with other paleoclimatic records around East Africa, we suggest that the humid conditions in this region responded to Northern Hemisphere (NH) summer insolation. The AHP I and II might have been related to an eastward shift of the Congo Air Boundary and warmer conditions in the western Indian Ocean, which resulted in additional moisture being delivered from the Atlantic and Indian Oceans during the NH summer and autumn, respectively. We further note a drought event throughout East Africa north of 10°S around 8.2 ka, which may have been related to the southward migration of the Intertropical Convergence Zone in response to the NH cooling event.

  9. The Omo Mursi Formation: a window into the East African Pliocene.

    PubMed

    Drapeau, Michelle S M; Bobe, René; Wynn, Jonathan G; Campisano, Christopher J; Dumouchel, Laurence; Geraads, Denis

    2014-10-01

    Dating to more than four million years ago (Ma), the Mursi Formation is among the oldest of the Plio-Pleistocene Omo Group deposits in the lower Omo Valley of southwestern Ethiopia. The sedimentary sequence is exposed along a strip ∼35 km by 4 km, but it has received relatively little attention due to the difficult access to this area. Although expeditions to the lower Omo Valley between 1968 and 1973 focused primarily on the Usno and Shungura Formations, survey of the Mursi Formation produced a faunal collection of about 250 specimens deriving exclusively from the Yellow Sands area at the southern extent of the exposures. In 2009, we reinitiated an investigation of the formation by focusing on the most northern exposures, and a new fossil site, Cholo, was identified. Cholo is depositionally similar to the lowermost exposures at the Yellow Sands, although no stratigraphic correlation between the two localities has yet been made. The fossiliferous sediments at Cholo are capped by a prominent vitric tuff that is compositionally distinct from any other known tephra preserved in East African rift basins, including the only known vitric tuff at the Yellow Sands. The faunal assemblage of the Yellow Sands area presents interesting characteristics: the fossils generally show little weathering and include a large proportion of suids (44% of the mammalian fauna) and a small proportion of bovids (14%) compared with other Pliocene African sites. The sample is also unusual in the high frequency of deinotheres (7%). Taxon-specific stable carbon isotopic composition of the Mursi mammals tends to show generally higher proportions of C3 diets compared with other Pliocene sites in East Africa and Chad. This and the particular faunal proportions suggest that the environments represented by the Mursi Formation were more closed than those of other Pliocene sites. Copyright © 2014 Elsevier Ltd. All rights reserved.

  10. Malaria resurgence in the East African highlands: Temperature trends revisited

    PubMed Central

    Pascual, M.; Ahumada, J. A.; Chaves, L. F.; Rodó, X.; Bouma, M.

    2006-01-01

    The incidence of malaria in the East African highlands has increased since the end of the 1970s. The role of climate change in the exacerbation of the disease has been controversial, and the specific influence of rising temperature (warming) has been highly debated following a previous study reporting no evidence to support a trend in temperature. We revisit this result using the same temperature data, now updated to the present from 1950 to 2002 for four high-altitude sites in East Africa where malaria has become a serious public health problem. With both nonparametric and parametric statistical analyses, we find evidence for a significant warming trend at all sites. To assess the biological significance of this trend, we drive a dynamical model for the population dynamics of the mosquito vector with the temperature time series and the corresponding detrended versions. This approach suggests that the observed temperature changes would be significantly amplified by the mosquito population dynamics with a difference in the biological response at least 1 order of magnitude larger than that in the environmental variable. Our results emphasize the importance of considering not just the statistical significance of climate trends but also their biological implications with dynamical models. PMID:16571662

  11. Transitioning from a Theological College to a Christian University in East African Context: A Multi-Case Study

    ERIC Educational Resources Information Center

    Mulatu, Semeon

    2012-01-01

    This dissertation analyzed and described transitions from a theological or Bible college to a Christian liberal arts college or university in East African context. The research was specially driven by the desire to find out the reasons for such transitions, the challenges of the transition process and how such transitions affect the mission of the…

  12. The Main Shear Zone in Sør Rondane, East Antarctica: Implications for the late-Pan-African tectonic evolution of Dronning Maud Land

    NASA Astrophysics Data System (ADS)

    Ruppel, Antonia S.; Läufer, Andreas; Jacobs, Joachim; Elburg, Marlina; Krohne, Nicole; Damaske, Detlef; Lisker, Frank

    2015-06-01

    Structural investigations in western Sør Rondane, eastern Dronning Maud Land (DML), provide new insights into the tectonic evolution of East Antarctica. One of the main structural features is the approximately 120 km long and several hundred meters wide WSW-ENE trending Main Shear Zone (MSZ). It is characterized by dextral high-strain ductile deformation under peak amphibolite-facies conditions. Crosscutting relationships with dated magmatic rocks bracket the activity of the MSZ between late Ediacaran to Cambrian times (circa 560 to 530 Ma). The MSZ separates Pan-African greenschist- to granulite-facies metamorphic rocks with "East African" affinities in the north from a Rayner-age early Neoproterozoic gabbro-tonalite-trondhjemite-granodiorite complex with "Indo-Antarctic" affinities in the south. It is interpreted to represent an important lithotectonic strike-slip boundary at a position close to the eastern margin of the East African-Antarctic Orogen (EAAO), which is assumed to be located farther south in the ice-covered region. Together with the possibly coeval left-lateral South Orvin Shear Zone in central DML, the MSZ may be related to NE directed lateral escape of the EAAO, whereas the Heimefront Shear Zone and South Kirwanveggen Shear Zone of western DML are part of the south directed branch of this bilateral system.

  13. Upper mantle structure beneath the northern part of the East African Plateau using data from the NE Uganda temporary seismic network

    NASA Astrophysics Data System (ADS)

    Bressers, C. A.; Nyblade, A.; Tugume, F.

    2017-12-01

    Data from a newly installed temporary seismic array in northeastern Uganda are incorporated into an existing body wave tomography model of eastern Africa to improve imaging of the upper mantle beneath the northern part of the East African Plateau. Nine temporary broadband stations were installed in January 2017 and will be operated through 2018 to obtain data for resolving structure under the northern part of the plateau as well as the East African rift in northern Kenya. Preliminary tomography models incorporate several months of data from stations in NE Uganda, plus many years of data from over 200 seismic stations throughout eastern Africa used in previously published body wave tomography models. The data come from teleseismic earthquakes with mb ≥ 5.5 at a distance from each station of 30° to 90°. P and S wave travel time residuals have been obtained using a multichannel cross correlation method and inverted using VanDecar's method to produce 3D tomographic images of the upper mantle. The preliminary results exhibit better resolved structure under the northern part of the East African Plateau than pervious models and suggest that the fast-wave speed anomaly in the upper mantle associated with the Tanzanian Craton—which is bounded by the Western and Eastern branches of the rift system—extends across most of northern Uganda.

  14. Middle East and North African Oil.

    ERIC Educational Resources Information Center

    Al-Quazzaz, Ayad

    1981-01-01

    Traces the history of oil and natural gas in the Middle East and relates the importance of the Middle East's current stores of oil to economic development. Information is presented on the relationship of major oil companies and local governments, OPEC, rate of production, and the impact of oil on the societies of the Middle East and North Africa.…

  15. Determinants of Oral Diseases in the African and Middle East Region.

    PubMed

    Chidzonga, M M; Carneiro, L C; Kalyanyama, B M; Kwamin, F; Oginni, F O

    2015-07-01

    Oral health policies must be developed that emphasize the role of social determinants in health and oral diseases. The aim of this report is to review literature on determinants of oral diseases and apply the concepts to promoting oral health in the African countries in the African and Middle East region (AMER). Structural and proximal determinants of oral diseases are common to those affected by other noncommunicable diseases (NCDs). Oral diseases are also heavily affected by issues of politics, poor health behaviors, underdeveloped health systems, and low oral health literacy. Wide-scale poverty exists in populations in the AMER. Oral health promotion and preventive oral health programs should therefore be integrated with those for general health and use the common risk factor approach (CRFA). Attempts should be made to improve the daily living conditions and reduce the incline of the social gradient. Oral health practitioners should use the CRFA when dealing with determinants of oral diseases and in the design of preventive oral health programs. The detrimental effects of the social determinants of health may be ameliorated by involving both the individual and community. Interventions in health promotion programs in the AMER need more research on the epidemiology of oral diseases and the role played by the social determinants of oral diseases, especially with regard to poverty. The high levels of poverty and low gross domestic product in most countries in the African region make it difficult to fund high-quality, affordable, accessible oral health services. © International & American Associations for Dental Research 2015.

  16. First report of the East African kdr mutation in an Anopheles gambiae mosquito in Côte d'Ivoire.

    PubMed

    Chouaïbou, Mouhamadou; Kouadio, Fodjo Behi; Tia, Emmanuel; Djogbenou, Luc

    2017-02-09

    Background . The intensive use of insecticides in public health and agriculture has led to the development of insecticide resistances in malaria vectors across sub-Saharan Africa countries in the last two decades. The kdr target site point mutation which is among the best characterised resistance mechanisms seems to be changing its distribution patterns on the African continent. The 1014F  kdr mutation originally described only in West Africa is spreading to East Africa while the 1014S  kdr mutation originally described in East Africa, is spreading to West and Central Africa. However, the East- kdr mutation has not been reported in Côte d'Ivoire so far. Methods . Immature stages of Anopheles gambiae s.l. were collected from breeding sites at the outskirts of Yamoussoukro, Côte d'Ivoire. Emerging 3-5 day old adult female mosquitoes were tested for susceptibility to deltamethrin 0.05%, malathion 5%, bendiocarb 1% and dichlorodiphenyltrichloroethane (DDT) 4% according to WHO standard procedures. A total of 50 An. gambiae s.l. specimens were drawn at random for DNA extraction and identification down to the species level. A subsample of 30 mosquitoes was tested for the East-African kdr mutation using a Taqman assay. Results . The tested mosquito population appeared to be strongly resistant to deltamethrin (1.03% mortality), bendiocarb (38.46% mortality) and DDT (0% mortality) with probable resistance observed for malathion (92.47%). Among the 41 mosquitoes that were successfully characterized, An. coluzzii was predominant (68.3%) followed by An. gambiae   s.s. (19.5%) and a few hybrids (7.3%). Out of 30 specimens genotyped for East- kdr , a single hybrid mosquito appeared to be heterozygous for the mutation. Conclusion . The present study revealed the presence of the East- kdr mutation in Côte d'Ivoire for the first time in An. gambiae and highlights the urgent need to start monitoring the allele and genotype frequencies.

  17. Signatures of positive selection in East African Shorthorn Zebu: A genome-wide single nucleotide polymorphism analysis

    PubMed Central

    Bahbahani, Hussain; Clifford, Harry; Wragg, David; Mbole-Kariuki, Mary N; Van Tassell, Curtis; Sonstegard, Tad; Woolhouse, Mark; Hanotte, Olivier

    2015-01-01

    The small East African Shorthorn Zebu (EASZ) is the main indigenous cattle across East Africa. A recent genome wide SNP analysis revealed an ancient stable African taurine x Asian zebu admixture. Here, we assess the presence of candidate signatures of positive selection in their genome, with the aim to provide qualitative insights about the corresponding selective pressures. Four hundred and twenty-five EASZ and four reference populations (Holstein-Friesian, Jersey, N’Dama and Nellore) were analysed using 46,171 SNPs covering all autosomes and the X chromosome. Following FST and two extended haplotype homozygosity-based (iHS and Rsb) analyses 24 candidate genome regions within 14 autosomes and the X chromosome were revealed, in which 18 and 4 were previously identified in tropical-adapted and commercial breeds, respectively. These regions overlap with 340 bovine QTL. They include 409 annotated genes, in which 37 were considered as candidates. These genes are involved in various biological pathways (e.g. immunity, reproduction, development and heat tolerance). Our results support that different selection pressures (e.g. environmental constraints, human selection, genome admixture constrains) have shaped the genome of EASZ. We argue that these candidate regions represent genome landmarks to be maintained in breeding programs aiming to improve sustainable livestock productivity in the tropics. PMID:26130263

  18. Effects of a Preschool Intervention on Cognitive Development among East-African Preschool Children: A Flexibly Time-Coded Growth Model

    ERIC Educational Resources Information Center

    Malmberg, Lars-Erik; Mwaura, Peter; Sylva, Kathy

    2011-01-01

    The aim of the study is to investigate the effects of the Madrasa Resource Center (MRC), a child-centered intervention program, on East-African (Kenya, Zanzibar, and Uganda) preschool children's cognitive development. Altogether 321 children (153 non-intervention and 168 intervention) participated in a cross-sequential study over three time-points…

  19. South-East Asian strains of Plasmodium falciparum display higher ratio of non-synonymous to synonymous polymorphisms compared to African strains

    PubMed Central

    Singh, Gajinder Pal; Sharma, Amit

    2016-01-01

    Resistance to frontline anti-malarial drugs, including artemisinin, has repeatedly arisen in South-East Asia, but the reasons for this are not understood. Here we test whether evolutionary constraints on Plasmodium falciparum strains from South-East Asia differ from African strains. We find a significantly higher ratio of non-synonymous to synonymous polymorphisms in P. falciparum from South-East Asia compared to Africa, suggesting differences in the selective constraints on P. falciparum genome in these geographical regions. Furthermore, South-East Asian strains showed a higher proportion of non-synonymous polymorphism at conserved positions, suggesting reduced negative selection. There was a lower rate of mixed infection by multiple genotypes in samples from South-East Asia compared to Africa. We propose that a lower mixed infection rate in South-East Asia reduces intra-host competition between the parasite clones, reducing the efficiency of natural selection. This might increase the probability of fixation of fitness-reducing mutations including drug resistant ones. PMID:27853513

  20. Khat chewing and acculturation in East-African migrants living in Frankfurt am Main/Germany.

    PubMed

    Bongard, Stephan; Nakajima, Motohiro; al'Absi, Mustafa

    2015-04-22

    Khat (Catha edulis, Forsk) is a drug widely used in countries around the Red Sea (East-Africa and Arabian Peninsula). In Germany khat chewing is illegal but nevertheless an often observed habit in immigrants from this region. This study investigates the interrelation between immigrants acculturation processes and traditional khat chewing habits. Sixty-one khat chewers (14 female) from East-African countries were interviewed about their khat chewing habits and acculturation strategy using standardized questionnaires. Results indicate that immigrants׳ khat chewing behaviors are similar to what is common in countries with traditional khat use. But khat chewing tended to be less among immigrants who were relatively more oriented towards their cultures of origin. Chewing khat was subjectively considered to help coping with problems, to forget bad memories and to concentrate better. It was concluded that khat chewing serves a functional use of coping with stressful events in the present or in the past within this sample. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

  1. Isolation and molecular characterization of Chikungunya virus from the Andaman and Nicobar archipelago, India: evidence of an East, Central, and South African genotype.

    PubMed

    Muruganandam, N; Chaaithanya, I K; Senthil, G S; Shriram, A N; Bhattacharya, D; Jeevabharathi, G S; Sudeep, A B; Pradeepkumar, N; Vijayachari, P

    2011-12-01

    Chikungunya virus (CHIKV) is an Alphavirus belonging to the family Togaviridae. In 2006, CHIKV infection struck the Andaman and Nicobar archipelago, with an attack rate of 60%. There were more than 10 cases with acute flaccid paralysis simulating the Guillian Barre Syndrome. The majority of the patients presented severe joint pain. The cause for such an explosive nature of the outbreak with increased morbidity was not known. The isolation of CHIKV was attempted and succeeded from nine subjects presenting clinical symptoms of Chikungunya fever. The cDNA of all the isolates was sequenced for partial E1 and nsP1 genes. Sequences were aligned based on the double locus sequence typing concept. The phylogenetic analysis shows that sequences of Andaman isolates grouped with the East, Central, and South African genotype of virus isolates from India, Sri Lanka, and Réunion. The genetic distance between Andaman isolates and the Réunion isolates was very small. The phylogenetic analysis confirmed the origin of the isolates responsible for the first ever confirmed CHIKV outbreak in these islands to be the East, Central, and South African genotype. In this manuscript, we discuss the involvement of the East, Central, and South African strain with the Chikungunya fever outbreak in this archipelago and double locus sequence typing as a first time approach.

  2. Imprints of a Pan-African transpressional orogen superimposed on an inferred Grenvillian accretionary belt in central East Antarctica

    NASA Astrophysics Data System (ADS)

    Ferraccioli, Fausto; Seddon, Samuel; Finn, Carol; Bell, Robin; Wu, Guochao; Jordan, Tom

    2017-04-01

    The Gamburtsev Subglacial Mountains in interior East Antarctica are underlain by 50-60 km thick crust imaged by gravity and seismic models (Ferraccioli et al., 2011; An et al., 2015). In contrast, the composite Archean to Mesoproterozoic Mawson craton that occupies the Wilkes and Terre Adelie sector of East Antarctica typically features only 40-45 km thick crust (Aitken et al., 2014). Over 200 km thick and seismically fast lithosphere underlies the Gamburtsev Province, as typically observed over Precambrian lithosphere that has not been substantially reworked during Phanerozoic subduction or collision. Satellite and airborne magnetic data indicate that the Gamburtev Province is sandwiched in between distinct Precambrian lithospheric blocks including the Ruker, Princess Elizabeth Land, Vostok, Nimrod (Goodge and Finn, 2010), South Pole and Recovery provinces. Ferraccioli et al., (2011) proposed that a segment of a stalled orogen (i.e. an orogen where widespread orogenic collapse and root delamination has not occurred) is preserved in the Gamburtsev Province and further hypothesised that its origin relates to widespread accretionary and subsequent collisional events at ca 1 Ga, linked to the assembly of the Rodinia supercontinent. However, recent passive seismic interpretations (An et al., 2015) indicate that crustal thickening may relate instead to Pan-African age assembly of Greater India, East Antarctica and Australia within Gondwana (at ca 550 Ma). Here we interpret a set of enhanced magnetic and gravity images, depth to magnetic and gravity sources and preliminary 2D and 3D forward and inverse models to characterise in detail the crustal architecture of the Gamburtsev Province. Enhanced aeromagnetic images reveal a system of subglacial faults that segment the Gamburtsev Province into three distinct geophysical domains, the northern, central and southern domains. Apparent offsets in high-frequency magnetic anomalies within the central domain are interpreted here

  3. Monogamy in the maternally mouthbrooding Lake Tanganyika cichlid fish Tropheus moorii

    PubMed Central

    Egger, Bernd; Obermüller, Beate; Phiri, Harris; Sturmbauer, Christian; Sefc, Kristina M

    2006-01-01

    Supported by evidence for assortative mating and polygynandry, sexual selection through mate choice was suggested as the main force driving the evolution of colour diversity of haplochromine cichlids in Lakes Malawi and Victoria. The phylogenetically closely related tribe Tropheini of Lake Tanganyika includes the genus Tropheus, which comprises over 100 colour variants currently classified into six morphologically similar, polyphyletic species. To assess the potential for sexual selection in this sexually monochromatic maternal mouthbrooder, we used microsatellite-based paternity inference to investigate the mating system of Tropheus moorii. In contrast to haplochromines in Lake Malawi, multiple paternity is rare or even absent in broods of T. moorii. Eighteen of the 19 analysed families were consistent with genetic monogamy, while either a mutation or more than one sire explained the genotype of one offspring in another brood. We discuss the differences in breeding behaviour between T. moorii and the Lake Malawi haplochromines, and evaluate additional factors or alternatives to sexual selection as promoters of colour diversification. A preliminary survey of other Tropheini species suggested that multiple paternity is infrequent in the entire tribe. PMID:16790413

  4. Multilocus Phylogeny of the Afrotropical Freshwater Crab Fauna Reveals Historical Drainage Connectivity and Transoceanic Dispersal Since the Eocene.

    PubMed

    Daniels, Savel R; Phiri, Ethel E; Klaus, Sebastian; Albrecht, Christian; Cumberlidge, Neil

    2015-07-01

    Phylogenetic reconstruction, divergence time estimations and ancestral range estimation were undertaken for 66% of the Afrotropical freshwater crab fauna (Potamonautidae) based on four partial DNA loci (12S rRNA, 16S rRNA, cytochrome oxidase one [COI], and histone 3). The present study represents the most comprehensive taxonomic sampling of any freshwater crab family globally, and explores the impact of paleodrainage interconnectivity on cladogenesis among freshwater crabs. Phylogenetic analyses of the total evidence data using maximum-likelihood (ML), maximum parsimony (MP), and Bayesian inference (BI) produced a robust statistically well-supported tree topology that reaffirmed the monophyly of the Afrotropical freshwater crab fauna. The estimated divergence times suggest that the Afrotropical Potamonautidae diverged during the Eocene. Cladogenesis within and among several genera occurred predominantly during the Miocene, which was associated with major tectonic and climatic ameliorations throughout the region. Paleodrainage connectivity was observed with specimens from the Nilo-Sudan and East African coast proving to be sister to specimens from the Upper Guinea Forests in West Africa. In addition, we observed strong sister taxon affinity between specimens from East Africa and the Congo basin, including specimens from Lake Tanganyika, while the southern African fauna was retrieved as sister to the Angolan taxa. Within the East African clade we observed two independent transoceanic dispersal events, one to the Seychelles Archipelago and a second to Madagascar, while we observe a single transoceanic dispersal event from West Africa to São Tomé. The ancestral area estimation suggested a West African/East African ancestral range for the family with multiple dispersal events between southern Africa and East Africa, and between East Africa and Central Africa The taxonomic implications of our results are discussed in light of the widespread paraphyly evident among a

  5. Hydrological and Vegetation Variability from Mediterranean Leaf Wax Biomarkers Before and After the Rise of East African C4 Grasslands

    NASA Astrophysics Data System (ADS)

    Meyers, C.; deMenocal, P. B.; Tierney, J. E.; Polissar, P. J.

    2012-12-01

    Terrestrial and marine paleoclimate records and changes in African fossil mammal taxa indicate that a transition towards more open, C4-dominated grasslands occurred in East Africa near 2 Ma. In contrast, the Mediterranean sapropel record documents pervasive precession-paced wet/dry cycles in the strength of the African monsoon and Nile runoff since at least the late Miocene. This study investigates whether the East African vegetation shift after 2 Ma was accompanied by a change in the monsoonal wet/dry cycle response to orbital precession forcing. We sampled eastern Mediterranean ODP Site 967 at 2-3 ka resolution in two 200 kyr intervals near 3.0 and 1.7 Ma. Nearly identical orbital configurations in these intervals allow us to compare mean conditions and orbital-paced variations before and after the 2 Ma transition. We used leaf wax biomarker concentrations and δD and δ13C compositions as proxies for monsoonal strength and vegetation type, and the δ18O composition of G. ruber as a proxy for Nile River runoff. Leaf wax biomarker concentrations varied over three orders of magnitude, with much higher concentrations in sapropels. During sapropel intervals, large-amplitude negative excursions occur in δDwax, δ13Cwax, and δ18Oruber, corresponding to a strengthened monsoon and less abundant C4 plants. Carbonate-rich intervals have positive isotope excursions indicating a weakened monsoon and more abundant C4 plants. The mean and variance of δDwax and δ13Cwax values are not significantly different between the 3.0 Ma and 1.7 Ma intervals indicating Northern Africa did not experience the vegetation and climate shifts observed in East Africa. While surprising, our finding suggests that the average monsoonal response to precession forcing, and corresponding vegetation variability, did not substantially change across the 2 Ma transition. This implies that North and East Africa exhibited different climate and vegetation behavior since 3 Ma.

  6. Planation surfaces as a record of medium to large wavelength deformation: the example of the Lake Albert Rift (Uganda) on the East African Dome

    NASA Astrophysics Data System (ADS)

    Brendan, Simon; François, Guillocheau; Cécile, Robin; Jean, Braun; Olivier, Dauteuil; Massimo, Dall'Asta

    2016-04-01

    African relief is characterized by planation surfaces, some of them of continental scale. These surfaces are slightly deformed according to different wavelengths (x10 km; x100 km, x1000 km) which record both mantle dynamics (very long wavelength, x 1000 km) and lithosphere deformation (long wavelength deformation, x 100 km). Different types of these planation surfaces are recognized: - Etchplains capped by iron-duricrust which correspond to erosional nearly flat weathered surfaces resulting from the growth of laterites under warm and humid conditions. - Pediments which define mechanical erosional surfaces with concave or rectilinear profiles delimited by upslope scarps connected upstream with the upper landforms. We here focused on the Lake Albert Rift at the northern termination of the western branch of the East African Rift System of which the two branches are surimposed on the East-African Dome. Different wavelengths of deformation were characterized based on the 3D mapping of stepped planation surfaces: (1) very long wavelength deformations resulting from the uplift of the East African Dome; (2) long wavelength deformations resulting from the opening of the eastern branch and (3) medium wavelength deformations represented by the uplift of rift shoulders like the Rwenzori Mountains. The paleo-landscape reconstruction of Uganda shows the existence of four generations of landforms dated according to their geometrical relationships with volcanic rocks. A four stepped evolution of the Ugandan landforms is proposed: • 70 - 22 Ma: generation of two weathered planation surfaces (etchplain Uw and Iw). The upper one (Uw) records a very humid period culminating at time of the Early Eocene Climatic Optimum (70-45 Ma). It corresponds to the African Surface. A first uplift of the East African Dome generates a second lower planation surface (Iw) connected to the Atlantic Ocean base level; • 17-2.7 Ma: planation of large pediplains connected to the local base level induced

  7. The Eastern Arc Mountains and coastal forests of East Africa-an archive to understand large-scale biogeographical patterns: Pseudotomias, a new genus of African Pseudophyllinae (Orthoptera: Tettigoniidae).

    PubMed

    Hemp, Claudia

    2016-06-21

    A new genus of Pseudophyllinae restricted to East Africa is described. Data on the ecology, and the habitat are provided. The biogeographical pattern and morphology suggests an old radiation since Tomias from Central and West Africa is the closest relative to Pseudotomias. The old forests of East Africa could hereby be the source of representatives of this old radiation since venation is less reduced in East African taxa of Phyllomimini.

  8. Molecular investigation of genetic assimilation during the rapid adaptive radiations of East African cichlid fishes.

    PubMed

    Gunter, Helen M; Schneider, Ralf F; Karner, Immanuel; Sturmbauer, Christian; Meyer, Axel

    2017-12-01

    Adaptive radiations are characterized by adaptive diversification intertwined with rapid speciation within a lineage resulting in many ecologically specialized, phenotypically diverse species. It has been proposed that adaptive radiations can originate from ancestral lineages with pronounced phenotypic plasticity in adaptive traits, facilitating ecologically driven phenotypic diversification that is ultimately fixed through genetic assimilation of gene regulatory regions. This study aimed to investigate how phenotypic plasticity is reflected in gene expression patterns in the trophic apparatus of several lineages of East African cichlid fishes, and whether the observed patterns support genetic assimilation. This investigation used a split brood experimental design to compare adaptive plasticity in species from within and outside of adaptive radiations. The plastic response was induced in the crushing pharyngeal jaws through feeding individuals either a hard or soft diet. We find that nonradiating, basal lineages show higher levels of adaptive morphological plasticity than the derived, radiated lineages, suggesting that these differences have become partially genetically fixed during the formation of the adaptive radiations. Two candidate genes that may have undergone genetic assimilation, gif and alas1, were identified, in addition to alterations in the wiring of LPJ patterning networks. Taken together, our results suggest that genetic assimilation may have dampened the inducibility of plasticity related genes during the adaptive radiations of East African cichlids, flattening the reaction norms and canalizing their feeding phenotypes, driving adaptation to progressively more narrow ecological niches. © 2017 John Wiley & Sons Ltd.

  9. Post-collisional magmatism in the central East African Orogen: The Maevarano Suite of north Madagascar

    NASA Astrophysics Data System (ADS)

    Goodenough, K. M.; Thomas, R. J.; De Waele, B.; Key, R. M.; Schofield, D. I.; Bauer, W.; Tucker, R. D.; Rafahatelo, J.-M.; Rabarimanana, M.; Ralison, A. V.; Randriamananjara, T.

    2010-04-01

    Late tectonic, post-collisional granite suites are a feature of many parts of the Late Neoproterozoic to Cambrian East African Orogen (EAO), where they are generally attributed to late extensional collapse of the orogen, accompanied by high heat flow and asthenospheric uprise. The Maevarano Suite comprises voluminous plutons which were emplaced in some of the tectonostratigraphic terranes of northern Madagascar, in the central part of the EAO, following collision and assembly during a major orogeny at ca. 550 Ma. The suite comprises three main magmatic phases: a minor early phase of foliated gabbros, quartz diorites, and granodiorites; a main phase of large batholiths of porphyritic granitoids and charnockites; and a late phase of small-scale plutons and sheets of monzonite, syenite, leucogranite and microgranite. The main phase intrusions tend to be massive, but with variably foliated margins. New U-Pb SHRIMP zircon data show that the whole suite was emplaced between ca. 537 and 522 Ma. Geochemically, all the rocks of the suite are enriched in the LILE, especially K, and the LREE, but are relatively depleted in Nb, Ta and the HREE. These characteristics are typical of post-collisional granitoids in the EAO and many other orogenic belts. It is proposed that the Maevarano Suite magmas were derived by melting of sub-continental lithospheric mantle that had been enriched in the LILE during earlier subduction events. The melting occurred during lithospheric delamination, which was associated with extensional collapse of the East African Orogen.

  10. A new insight into Pan-African tectonics in the East-West Gondwana collision zone by U-Pb zircon dating of granites from central Madagascar

    NASA Astrophysics Data System (ADS)

    Nédélec, A.; Paquette, J.-L.

    1998-02-01

    The assembly of Gondwana was the result of a major collision orogen, the East African Orogen, between East and West Gondwana during Neoproterozoic times. Madagascar, which represents a fragment of East Gondwana, is located in a key area of this Pan-African orogen. Granites of unambiguous tectonic setting have been dated using the U-Pb zircon method in order to constrain the timing of orogenic events. The central part of Madagascar is characterized by syntectonic alkaline granitic sheets, referred to as ``stratoid'' granites. These are of both mantle and crustal derivation. Their U-Pb zircon ages are well defined between 627 and 633 Ma for both plutonic suites, regardless of either mainly mantle or crustally origin. It is not surprising that the crustally-derived suite contains inherited zircons in the 2.2-2.4 Ga range attesting to the existence of Lower Proterozoic crust in northern central Madagascar. The generation of huge amounts of granitic magma is regarded as the result of post-collision extension under a high heat flow regime. Therefore, an age between 700 and 650 Ma is inferred for the beginning of Gondwana assembly along the collision zone between central Madagascar and Kenya, i.e., in the central part of the East African Orogen. Following this, brittle fracturing of the stratoid granite series permitted the emplacement of the Ambatomiranty granitic dyke swarm at a minimum age of 560 Ma, in possible connection with a nearby shear belt. The strike-slip tectonic regime at ~570-560 Ma is well known in southern Madagascar and in its Gondwana connections. This stage corresponds to intracontinental reworking and the final suturing of Gondwana.

  11. A new insight into Pan-African tectonics in the East-West Gondwana collision zone by U-Pb zircon dating of granites from central Madagascar

    NASA Astrophysics Data System (ADS)

    Paquette, Jean-Louis; Nédélec, Anne

    1998-02-01

    The assembly of Gondwana was the result of a major collision orogen, the East African Orogen, between East and West Gondwana during Neoproterozoic times. Madagascar, which represents a fragment of East Gondwana, is located in a key area of this Pan-African orogen. Granites of unambiguous tectonic setting have been dated using the U-Pb zircon method in order to constrain the timing of orogenic events. The central part of Madagascar is characterized by syntectonic alkaline granitic sheets, referred to as "stratoid" granites. These are of both mantle and crustal derivation. Their U-Pb zircon ages are well defined between 627 and 633 Ma for both plutonic suites, regardless of either mainly mantle or crustally origin. It is not surprising that the crustally-derived suite contains inherited zircons in the 2.2-2.4 Ga range attesting to the existence of Lower Proterozoic crust in northern central Madagascar. The generation of huge amounts of granitic magma is regarded as the result of post-collision extension under a high heat flow regime. Therefore, an age between 700 and 650 Ma is inferred for the beginning of Gondwana assembly along the collision zone between central Madagascar and Kenya, i.e., in the central part of the East African Orogen. Following this, brittle fracturing of the stratoid granite series permitted the emplacement of the Ambatomiranty granitic dyke swarm at a minimum age of 560 Ma, in possible connection with a nearby shear belt. The strike-slip tectonic regime at ˜570-560 Ma is well known in southern Madagascar and in its Gondwana connections. This stage corresponds to intracontinental reworking and the final suturing of Gondwana.

  12. Dynamical and Thermodynamic Elements of Modeled Climate Change at the East African Margin of Convection

    NASA Astrophysics Data System (ADS)

    Giannini, Alessandra; Lyon, Bradfield; Seager, Richard; Vigaud, Nicolas

    2018-01-01

    We propose a dynamical interpretation of model projections for an end-of-century wetting in equatorial East Africa. In the current generation of global climate models, increased atmospheric moisture content associated with warming is not the dominant process explaining the increase in rainfall, as the regional circulation is only weakly convergent even during the rainy seasons. Instead, projected wetter future conditions are generally consistent with the El Niño-like trend in tropical Pacific sea surface temperatures in climate models. In addition, a weakening in moisture convergence over the adjacent Congo Basin and Maritime Continent cores of convection results in the weakening of near-surface winds, which increases moisture advection from the Congo Basin core toward the East African margin. Overall confidence in the projections is limited by the significant biases in simulation of the regional climatology and disagreement between observed and modeled tropical Pacific sea surface temperature trends to date.

  13. Helium isotopes at Rungwe Volcanic Province, Tanzania, and the origin of East African Plateaux

    NASA Astrophysics Data System (ADS)

    Hilton, D. R.; Halldórsson, S. A.; Barry, P. H.; Fischer, T. P.; de Moor, J. M.; Ramirez, C. J.; Mangasini, F.; Scarsi, P.

    2011-11-01

    We report helium isotope ratios (3He/4He) of lavas and tephra of the Rungwe Volcanic Province (RVP) in southern Tanzania. Values as high as 15RA (RA = air 3He/4He) far exceed typical upper mantle values, and are the first observation of plume-like ratios south of the Turkana Depression which separates the topographic highs of the Ethiopia and Kenya domes. The African Superplume - a tilted low-velocity seismic anomaly extending to the core-mantle boundary beneath southern Africa - is the likely source of these high 3He/4He ratios. High 3He/4He ratios at RVP together with similarly-high values along the Main Ethiopian Rift and in Afar provide compelling evidence that the African Superplume is a feature that extends through the 670-km seismic discontinuity and provides dynamic support - either as a single plume or via multiple upwellings - for the two main topographic features of the East Africa Rift System as well as heat and mass to drive continuing rift-related magmatism.

  14. Gene-Centric Meta-Analysis of Lipid Traits in African, East Asian and Hispanic Populations

    PubMed Central

    Tragante, Vinicius; van Iperen, Erik P. A.; Lanktree, Matthew B.; Castillo, Berta Almoguera; Chen, Fang; Yanek, Lisa R.; Wojczynski, Mary K.; Li, Yun R.; Ferwerda, Bart; Ballantyne, Christie M.; Buxbaum, Sarah G.; Chen, Yii-Der Ida; Chen, Wei-Min; Cupples, L. Adrienne; Cushman, Mary; Duan, Yanan; Duggan, David; Evans, Michele K.; Fernandes, Jyotika K.; Fornage, Myriam; Garcia, Melissa; Garvey, W. Timothy; Glazer, Nicole; Gomez, Felicia; Harris, Tamara B.; Halder, Indrani; Howard, Virginia J.; Keller, Margaux F.; Kamboh, M. Ilyas; Kooperberg, Charles; Kritchevsky, Stephen B.; LaCroix, Andrea; Liu, Kiang; Liu, Yongmei; Musunuru, Kiran; Newman, Anne B.; Onland-Moret, N. Charlotte; Ordovas, Jose; Peter, Inga; Post, Wendy; Redline, Susan; Reis, Steven E.; Saxena, Richa; Schreiner, Pamela J.; Volcik, Kelly A.; Wang, Xingbin; Yusuf, Salim; Zonderland, Alan B.; Anand, Sonia S.; Becker, Diane M.; Psaty, Bruce; Rader, Daniel J.; Reiner, Alex P.; Rich, Stephen S.; Rotter, Jerome I.; Sale, Michèle M.; Tsai, Michael Y.; Borecki, Ingrid B.; Hegele, Robert A.; Kathiresan, Sekar; Nalls, Michael A.; Taylor, Herman A.; Hakonarson, Hakon; Sivapalaratnam, Suthesh; Asselbergs, Folkert W.; Drenos, Fotios; Wilson, James G.; Keating, Brendan J.

    2012-01-01

    Meta-analyses of European populations has successfully identified genetic variants in over 100 loci associated with lipid levels, but our knowledge in other ethnicities remains limited. To address this, we performed dense genotyping of ∼2,000 candidate genes in 7,657 African Americans, 1,315 Hispanics and 841 East Asians, using the IBC array, a custom ∼50,000 SNP genotyping array. Meta-analyses confirmed 16 lipid loci previously established in European populations at genome-wide significance level, and found multiple independent association signals within these lipid loci. Initial discovery and in silico follow-up in 7,000 additional African American samples, confirmed two novel loci: rs5030359 within ICAM1 is associated with total cholesterol (TC) and low-density lipoprotein cholesterol (LDL-C) (p = 8.8×10−7 and p = 1.5×10−6 respectively) and a nonsense mutation rs3211938 within CD36 is associated with high-density lipoprotein cholesterol (HDL-C) levels (p = 13.5×10−12). The rs3211938-G allele, which is nearly absent in European and Asian populations, has been previously found to be associated with CD36 deficiency and shows a signature of selection in Africans and African Americans. Finally, we have evaluated the effect of SNPs established in European populations on lipid levels in multi-ethnic populations and show that most known lipid association signals span across ethnicities. However, differences between populations, especially differences in allele frequency, can be leveraged to identify novel signals, as shown by the discovery of ICAM1 and CD36 in the current report. PMID:23236364

  15. Simultaneous determination of seven informative Y chromosome SNPs to differentiate East Asian, European, and African populations.

    PubMed

    Muro, Tomonori; Iida, Reiko; Fujihara, Junko; Yasuda, Toshihiro; Watanabe, Yukina; Imamura, Shinji; Nakamura, Hiroaki; Kimura-Kataoka, Kaori; Yuasa, Isao; Toga, Tomoko; Takeshita, Haruo

    2011-05-01

    Identification of the population origin of an individual is very useful for crime investigators who need to narrow down a suspect based on specimens left at a crime scene. Single nucleotide polymorphisms of the Y chromosome (Y-SNPs) are a class of markers of interest to forensic investigators because many of the markers indicate regional specificity, thus providing useful information about the geographic origin of a subject. We selected seven informative Y-SNPs (M168, M130, JST021355, M96, P126, P196, and P234) to differentiate the three major population groups (East Asian, European, and African) and used them to develop forensic application. SNP genotyping was carried out by multiplex PCR reaction and multiplex single base extension (MSBE) reaction followed by capillary electrophoresis of extension products. This method can be used to assign a haplogroup from both degraded male DNA samples and DNA samples containing a mixture of female and male DNA through PCR primers that generate small amplicons (less than about 150 bp) and are highly specific for targets on the Y chromosome. The allelic state of each marker was definitively determined from a total of 791 males from the three major population groups. As expected, samples from the three major population groups showed Y-haplogroups common in the region of provenance: Y haplogroups C, D, and O for East Asians; IJ and R1 for Europeans; and AB and E for Africans. Published by Elsevier Ireland Ltd.

  16. Seasonal patterns of mixed species groups in large East African mammals.

    PubMed

    Kiffner, Christian; Kioko, John; Leweri, Cecilia; Krause, Stefan

    2014-01-01

    Mixed mammal species groups are common in East African savannah ecosystems. Yet, it is largely unknown if co-occurrences of large mammals result from random processes or social preferences and if interspecific associations are consistent across ecosystems and seasons. Because species may exchange important information and services, understanding patterns and drivers of heterospecific interactions is crucial for advancing animal and community ecology. We recorded 5403 single and multi-species clusters in the Serengeti-Ngorongoro and Tarangire-Manyara ecosystems during dry and wet seasons and used social network analyses to detect patterns of species associations. We found statistically significant associations between multiple species and association patterns differed spatially and seasonally. Consistently, wildebeest and zebras preferred being associated with other species, whereas carnivores, African elephants, Maasai giraffes and Kirk's dik-diks avoided being in mixed groups. During the dry season, we found that the betweenness (a measure of importance in the flow of information or disease) of species did not differ from a random expectation based on species abundance. In contrast, in the wet season, we found that these patterns were not simply explained by variations in abundances, suggesting that heterospecific associations were actively formed. These seasonal differences in observed patterns suggest that interspecific associations may be driven by resource overlap when resources are limited and by resource partitioning or anti-predator advantages when resources are abundant. We discuss potential mechanisms that could drive seasonal variation in the cost-benefit tradeoffs that underpin the formation of mixed-species groups.

  17. Contrasting parasite communities among allopatric colour morphs of the Lake Tanganyika cichlid Tropheus

    PubMed Central

    2013-01-01

    Background Adaptation to different ecological environments is thought to drive ecological speciation. This phenomenon culminates in the radiations of cichlid fishes in the African Great Lakes. Multiple characteristic traits of cichlids, targeted by natural or sexual selection, are considered among the driving factors of these radiations. Parasites and pathogens have been suggested to initiate or accelerate speciation by triggering both natural and sexual selection. Three prerequisites for parasite-driven speciation can be inferred from ecological speciation theory. The first prerequisite is that different populations experience divergent infection levels. The second prerequisite is that these infection levels cause divergent selection and facilitate adaptive divergence. The third prerequisite is that parasite-driven adaptive divergence facilitates the evolution of reproductive isolation. Here we investigate the first and the second prerequisite in allopatric chromatically differentiated lineages of the rock-dwelling cichlid Tropheus spp. from southern Lake Tanganyika (Central Africa). Macroparasite communities were screened in eight populations belonging to five different colour morphs. Results Parasite communities were mainly composed of acanthocephalans, nematodes, monogeneans, copepods, branchiurans, and digeneans. In two consecutive years (2011 and 2012), we observed significant variation across populations for infection with acanthocephalans, nematodes, monogeneans of the genera Gyrodactylus and Cichlidogyrus, and the copepod Ergasilus spp. Overall, parasite community composition differed significantly between populations of different colour morphs. Differences in parasite community composition were stable in time. The genetic structure of Tropheus populations was strong and showed a significant isolation-by-distance pattern, confirming that spatial isolation is limiting host dispersal. Correlations between parasite community composition and Tropheus genetic

  18. Statistical analysis of the correlation between the equatorial electrojet and the occurrence of the equatorial ionisation anomaly over the East African sector

    NASA Astrophysics Data System (ADS)

    Mungufeni, Patrick; Bosco Habarulema, John; Migoya-Orué, Yenca; Jurua, Edward

    2018-06-01

    This study presents statistical quantification of the correlation between the equatorial electrojet (EEJ) and the occurrence of the equatorial ionisation anomaly (EIA) over the East African sector. The data used were for quiet geomagnetic conditions (Kp ≤ 3) during the period 2011-2013. The horizontal components, H, of geomagnetic fields measured by magnetometers located at Addis Ababa, Ethiopia (dip lat. ˜ 1° N), and Adigrat, Ethiopia (dip lat. ˜ 6° N), were used to determine the EEJ using differential techniques. The total electron content (TEC) derived from Global Navigation Satellite System (GNSS) signals using 19 receivers located along the 30-40° longitude sector was used to determine the EIA strengths over the region. This was done by determining the ratio of TEC over the crest to that over the trough, denoted as the CT : TEC ratio. This technique necessitated characterisation of the morphology of the EIA over the region. We found that the trough lies slightly south of the magnetic equator (0-4° S). This slight southward shift of the EIA trough might be due to the fact that over the East African region, the general centre of the EEJ is also shifted slightly south of the magnetic equator. For the first time over the East African sector, we determined a threshold daytime EEJ strength of ˜ 40 nT that is mostly associated with prominent EIA occurrence during a high solar activity period. The study also revealed that there is a positive correlation between daytime EEJ and EIA strengths, with a strong positive correlation occurring during the period 13:00-15:00 LT.

  19. "Reading" Central African Skies - A Case Study from Southeastern DRC

    NASA Astrophysics Data System (ADS)

    Roberts, Allen F.

    Little is known of the local astronomies of central Africa, and because of decades of horrific civil strife, this is particularly true of the Democratic Republic of the Congo (DRC). The present case study combines archival consideration of unpublished letters by earliest European visitors with ethnographic research in the mid-1970s among Tabwa and related peoples living along the western shores of and inland from Lake Tanganyika. Early data are very sparse, and in more recent days local astronomy is little-developed; but hypotheses are nonetheless possible about how people understood the regularities of the heavens as well as astonishing events like the apparition of Sungrazer Comets of the 1880s. A mnemonic logic shared by Tabwa, Luba, and other regional groups that was sometimes given material form or realized through performance arts may have informed how central African skies were "read" in earlier times.

  20. Conceptualizations of heterosexual anal sex and HIV risk in five East African communities.

    PubMed

    Duby, Zoe; Colvin, Christopher

    2014-01-01

    Heterosexual anal sex is underresearched and little understood, particularly in the African context. Existing prevalence data indicate that heterosexual anal sex is a widespread practice, yet little is known about the way in which it is conceptualized and understood. Describing findings from qualitative research conducted in Kenya, Tanzania, and Uganda, we shed light on conceptualizations of heterosexual anal sex and its relation to human immunodeficiency virus (HIV). These findings suggest that penile-anal sex is practiced by men and women in Africa for a range of reasons, including virginity maintenance, contraception, fulfillment of male pleasure, relationship security, menstruation, in the presence of vaginal complications, financial gain, fidelity, and prestige. Despite anal sex being the most efficient way to transmit HIV sexually, there is widespread lack of knowledge about its risks. These findings describe the ways in which anal sex is conceptualized in five East African communities, highlighting how penile-anal intercourse is often not considered "sex" and how the omission of anal sex in safe-sex messaging is interpreted as meaning that anal sex is safe. In light of its frequency and risks, greater attention must be paid to heterosexual anal sex in Africa to ensure a comprehensive approach to HIV prevention.

  1. Ambient noise tomography of the East African Rift in Mozambique

    NASA Astrophysics Data System (ADS)

    Domingues, Ana; Silveira, Graça; Ferreira, Ana M. G.; Chang, Sung-Joon; Custódio, Susana; Fonseca, João F. B. D.

    2016-03-01

    Seismic ambient noise tomography is applied to central and southern Mozambique, located in the tip of the East African Rift (EAR). The deployment of MOZART seismic network, with a total of 30 broad-band stations continuously recording for 26 months, allowed us to carry out the first tomographic study of the crust under this region, which until now remained largely unexplored at this scale. From cross-correlations extracted from coherent noise we obtained Rayleigh wave group velocity dispersion curves for the period range 5-40 s. These dispersion relations were inverted to produce group velocity maps, and 1-D shear wave velocity profiles at selected points. High group velocities are observed at all periods on the eastern edge of the Kaapvaal and Zimbabwe cratons, in agreement with the findings of previous studies. Further east, a pronounced slow anomaly is observed in central and southern Mozambique, where the rifting between southern Africa and Antarctica created a passive margin in the Mesozoic, and further rifting is currently happening as a result of the southward propagation of the EAR. In this study, we also addressed the question concerning the nature of the crust (continental versus oceanic) in the Mozambique Coastal Plains (MCP), still in debate. Our data do not support previous suggestions that the MCP are floored by oceanic crust since a shallow Moho could not be detected, and we discuss an alternative explanation for its ocean-like magnetic signature. Our velocity maps suggest that the crystalline basement of the Zimbabwe craton may extend further east well into Mozambique underneath the sediment cover, contrary to what is usually assumed, while further south the Kaapval craton passes into slow rifted crust at the Lebombo monocline as expected. The sharp passage from fast crust to slow crust on the northern part of the study area coincides with the seismically active NNE-SSW Urema rift, while further south the Mazenga graben adopts an N-S direction

  2. A comparative study to screen dementia and APOE genotypes in an ageing East African population

    PubMed Central

    Chen, Chien-Hsiun; Mizuno, Toshiki; Elston, Robert; Kariuki, Monica M.; Hall, Kathleen; Unverzagt, Fred; Hendrie, Hugh; Gatere, Samuel; Kioy, Paul; Patel, Nilesh B.; Friedland, Robert P.; Kalaria, Raj N.

    2010-01-01

    Previous studies have established cross-cultural methods to screen for ageing- related dementia and susceptibility genes, in particular Alzheimer’s disease (AD) among the Canadian Cree, African Americans and Yoruba in Nigeria. We determined whether the Community Screening Interview for Dementia (CSID), translated into Kikuyu, a major language of Kenya, could be used to evaluate dementia of the Alzheimer type. Using two sets of coefficients of cognitive and informant scores, two discriminant function (DF) scores were calculated for each of 100 elderly (>65 years) Nyeri Kenyans. When the cut-off points were selected for 100% sensitivities, the specificities of the DF scores were remarkably similar (93.75%) in the Kenyan sample. We propose the adapted CSID can be utilised to detect dementia among East Africans. We also show that apolipoprotein E ε4 allele frequencies were high (∼30%) and not different between normal subjects and those with probable AD. There was no evidence to suggest years of education or vascular factors were associated with dementia status. PMID:18703255

  3. African and Non-African Admixture Components in African Americans and An African Caribbean Population

    PubMed Central

    Murray, Tanda; Beaty, Terri H.; Mathias, Rasika A.; Rafaels, Nicholas; Grant, Audrey Virginia; Faruque, Mezbah U.; Watson, Harold R.; Ruczinski, Ingo; Dunston, Georgia M.; Barnes, Kathleen C.

    2013-01-01

    Admixture is a potential source of confounding in genetic association studies, so it becomes important to detect and estimate admixture in a sample of unrelated individuals. Populations of African descent in the US and the Caribbean share similar historical backgrounds but the distributions of African admixture may differ. We selected 416 ancestry informative markers (AIMs) to estimate and compare admixture proportions using STRUCTURE in 906 unrelated African Americans (AAs) and 294 Barbadians (ACs) from a study of asthma. This analysis showed AAs on average were 72.5% African, 19.6% European and 8% Asian, while ACs were 77.4% African, 15.9% European, and 6.7% Asian which were significantly different. A principal components analysis based on these AIMs yielded one primary eigenvector that explained 54.04% of the variation and captured a gradient from West African to European admixture. This principal component was highly correlated with African vs. European ancestry as estimated by STRUCTURE (r2 = 0.992, r2 = 0.912, respectively). To investigate other African contributions to African American and Barbadian admixture, we performed PCA on ~14,000 (14k) genome-wide SNPs in AAs, ACs, Yorubans, Luhya and Maasai African groups, and estimated genetic distances (FST). We found AAs and ACs were closest genetically (FST = 0.008), and both were closer to the Yorubans than the other East African populations. In our sample of individuals of African descent, ~400 well-defined AIMs were just as good for detecting substructure as ~14,000 random SNPs drawn from a genome-wide panel of markers. PMID:20717976

  4. Seasonal Patterns of Mixed Species Groups in Large East African Mammals

    PubMed Central

    Kiffner, Christian; Kioko, John; Leweri, Cecilia; Krause, Stefan

    2014-01-01

    Mixed mammal species groups are common in East African savannah ecosystems. Yet, it is largely unknown if co-occurrences of large mammals result from random processes or social preferences and if interspecific associations are consistent across ecosystems and seasons. Because species may exchange important information and services, understanding patterns and drivers of heterospecific interactions is crucial for advancing animal and community ecology. We recorded 5403 single and multi-species clusters in the Serengeti-Ngorongoro and Tarangire-Manyara ecosystems during dry and wet seasons and used social network analyses to detect patterns of species associations. We found statistically significant associations between multiple species and association patterns differed spatially and seasonally. Consistently, wildebeest and zebras preferred being associated with other species, whereas carnivores, African elephants, Maasai giraffes and Kirk's dik-diks avoided being in mixed groups. During the dry season, we found that the betweenness (a measure of importance in the flow of information or disease) of species did not differ from a random expectation based on species abundance. In contrast, in the wet season, we found that these patterns were not simply explained by variations in abundances, suggesting that heterospecific associations were actively formed. These seasonal differences in observed patterns suggest that interspecific associations may be driven by resource overlap when resources are limited and by resource partitioning or anti-predator advantages when resources are abundant. We discuss potential mechanisms that could drive seasonal variation in the cost-benefit tradeoffs that underpin the formation of mixed-species groups. PMID:25470495

  5. Depth and substratum differentiations among coexisting herbivorous cichlids in Lake Tanganyika

    PubMed Central

    Ochi, Haruki

    2016-01-01

    Cichlid fish in Lake Tanganyika represent a system of adaptive radiation in which eight ancestral lineages have diversified into hundreds of species through adaptation to various niches. However, Tanganyikan cichlids have been thought to be oversaturated, that is, the species number exceeds the number of niches and ecologically equivalent and competitively even species coexist. However, recent studies have shed light on niche segregation on a finer scale among apparently equivalent species. We observed depth and substratum preferences of 15 herbivorous cichlids from four ecomorphs (i.e. grazer, browser, scraper and scooper) on a rocky littoral slope for 14 years. Depth differentiation was detected among grazers that defended feeding territories and among browsers with feeding territories. Cichlid species having no feeding territory also showed specificity on depth and substratum, resulting in habitat segregation among species that belong to the same ecomorph. Phylogenetically close species did not occupy adjacent depths, nor the opposite depth zones. Our findings suggest that apparently equivalent species of the same ecomorph coexist parapatrically along depth on a few-metre scale, or coexist with different substratum preferences on the rocky shore, and this niche segregation may have been acquired by competition between encountering equivalent species through repetitive lake-level fluctuations. PMID:28018609

  6. Using SINEs to probe ancient explosive speciation: "hidden" radiation of African cichlids?

    PubMed

    Terai, Yohey; Takahashi, Kazuhiko; Nishida, Mutsumi; Sato, Tetsu; Okada, Norihiro

    2003-06-01

    Cichlid fishes of the east African Great Lakes represent a paradigm of adaptive radiation. We conducted a phylogenetic analysis of cichlids including pan-African and west African species by using insertion patterns of short interspersed elements (SINEs) at orthologous loci. The monophyly of the east African cichlids was consistently supported by seven independent insertions of SINE sequences that are uniquely shared by these species. In addition, data from four other loci indicated that the genera Tilapia (pan-African) and Steatocranus (west African) are the closest relatives to east African cichlids. However, relationships among Tilapia, Steatocranus, and the east African clade were ambiguous because of incongruencies among topologies suggested by insertion patterns of SINEs at six other loci. One plausible explanation for this phenomenon is incomplete lineage sorting of alleles containing or missing a SINE insertion at these loci during ancestral speciation. Such incomplete sorting may have taken place earlier than 14 MYA, followed by random and stochastic fixation of the alleles in subsequent lineages. These observations prompted us to consider the possibility that cichlid speciation occurred at an accelerated rate during this period when the African Great Lakes did not exist. The SINE method could be useful for detecting ancient exclusive speciation events that tend to remain hidden during conventional sequence analyses because of accumulated point mutations.

  7. Predicting East African spring droughts using Pacific and Indian Ocean sea surface temperature indices

    USGS Publications Warehouse

    Funk, Christopher C.; Hoell, Andrew; Shukla, Shraddhanand; Blade, Ileana; Liebmann, Brant; Roberts, Jason B.; Robertson, Franklin R.

    2014-01-01

    In southern Ethiopia, Eastern Kenya, and southern Somalia poor boreal spring rains in 1999, 2000, 2004, 2007, 2008, 2009 and 2011 contributed to severe food insecurity and high levels of malnutrition. Predicting rainfall deficits in this region on seasonal and decadal time frames can help decision makers support disaster risk reduction while guiding climate-smart adaptation and agricultural development. Building on recent research that links more frequent droughts to a stronger Walker Circulation, warming in the Indo-Pacific warm pool, and an increased western Pacific sea surface temperature (SST) gradient, we explore the dominant modes of East African rainfall variability, links between these modes and sea surface temperatures, and a simple index-based monitoring-prediction system suitable for drought early warning.

  8. Present-day kinematics of the East African Rift

    NASA Astrophysics Data System (ADS)

    Saria, E.; Calais, E.; Stamps, D. S.; Delvaux, D.; Hartnady, C. J. H.

    2014-04-01

    The East African Rift (EAR) is a type locale for investigating the processes that drive continental rifting and breakup. The current kinematics of this 5000 km long divergent plate boundary between the Nubia and Somalia plates is starting to be unraveled thanks to a recent augmentation of space geodetic data in Africa. Here we use a new data set combining episodic GPS measurements with continuous measurements on the Nubian, Somalian, and Antarctic plates, together with earthquake slip vector directions and geologic indicators along the Southwest Indian Ridge to update the present-day kinematics of the EAR. We use geological and seismological data to determine the main rift faults and solve for rigid block rotations while accounting for elastic strain accumulation on locked active faults. We find that the data are best fit with a model that includes three microplates embedded within the EAR, between Nubia and Somalia (Victoria, Rovuma, and Lwandle), consistent with previous findings but with slower extension rates. We find that earthquake slip vectors provide information that is consistent with the GPS velocities and helps to significantly reduce uncertainties of plate angular velocity estimates. We also find that 3.16 Myr MORVEL average spreading rates along the Southwest Indian Ridge are systematically faster than prediction from GPS data alone. This likely indicates that outward displacement along the SWIR is larger than the default value used in the MORVEL plate motion model.

  9. Kinematics of the entire East African Rift from GPS velocities

    NASA Astrophysics Data System (ADS)

    Floyd, M.; King, R. W.

    2017-12-01

    Through a collaborative effort of the GeoPRISMS East Africa Rift GPS Working Group, we have collected and collated all of the publicly available continuous and survey-mode data for the entire rift system between 1994 and 2017 and processed these data as part of a larger velocity solution for Africa, Arabia and western Eurasia. We present here our velocity solution encompassing the major bounding plates and intervening terranes along the East African Rift from the Red Sea to the Malawi Rift and adjacent regions for GPS sites with data spans of at least 2.4 years, and north and east velocity uncertainties less than 1.5 mm/yr. To obtain realistic uncertainties for the velocity estimates, we attempted at each stage of the analysis to account for the character of the noise: During phase processing, we used an elevation-dependent weighting based on the phase residuals for each station; we then examined each position time series, removing outliers and reweighting appropriately to account for the white noise component of the errors; and e accounted for temporal correlations by estimating an equivalent random-walk magnitude for each continuous site and applying the median value (0.5 mm/√yr) to all survey-mode sites. We rigorously estimate relative rotation rates of Nubia, by choosing subset of well-determined sites such that the effective weights of western, northeastern and southern Africa were roughly equivalent, and Somalia, for which the estimate is dominated by three sites (MALI, RCMN, SEY1) whose uncertainties are a factor of 2-3 smaller than those of the other sites. For both plates, the weighted root-mean-square of the velocity residuals is 0.5 mm/yr. Our unified velocity solution provides a geodetic framework and constraints on the continental-scale kinematics of surface motions as well as more local effects both within and outside of the rift structures. Specific focus areas with denser coverage than previous fields include the Danakil block, the Afar Rift, the

  10. Tectonic Evolution of Mozambique Ridge in East African continental margin

    NASA Astrophysics Data System (ADS)

    Tang, Yong

    2017-04-01

    Tectonic Evolution of Mozambique Ridge in East African continental margin Yong Tang He Li ES.Mahanjane Second Institute of Oceanography,SOA,Hangzhou The East Africa passive continental margin is a depression area, with widely distributed sedimentary wedges from southern Mozambique to northern Somali (>6500km in length, and about 6km in thickness). It was resulted from the separation of East Gondwana, and was developed by three stages: (1) rifting in Early-Middle Jurassic; (2) spreading from Late Jurassic to Early Cretaceous; (3) drifting since the Cretaceous period. Tectonic evolution of the Mozambique continental margin is distinguished by two main settings separated by a fossil transform, the Davie Fracture Zone; (i) rifting and transform setting in the northern margin related to opening of the Somali and Rovuma basins, and (ii) rifting and volcanism setting during the opening of the Mozambique basin in the southern margin. 2D reflection seismic investigation of the crustal structure in the Zambezi Delta Depression, provided key piece of evidence for two rifting phases between Africa and Antarctica. The magma-rich Rift I phase evolved from rift-rift-rift style with remarkable emplacement of dyke swarms (between 182 and 170 Ma). Related onshore outcrops are extensively studied, the Karoo volcanics in Mozambique, Zimbabwe and South Africa, all part of the Karoo "triple-junction". These igneous bodies flow and thicken eastwards and are now covered by up to 5 km of Cretaceous and Tertiary sediments and recorded by seismic and oil exploration wells. Geophysical and geological data recorded during oceanographic cruises provide very controversial results regarding the nature of the Mozambique Ridge. Two conflicting opinions remains open, since the early expeditions to the Indian Ocean, postulating that its character is either magmatic (oceanic) or continental origin. We have carried out an China-Mozambique Joint Cruise(CMJC) on southern Mozambique Basin on 1st June to

  11. The Lake Albert Rift (uganda, East African Rift System): Deformation, Basin and Relief Evolution Since 17 Ma

    NASA Astrophysics Data System (ADS)

    Brendan, Simon; François, Guillocheau; Cécile, Robin; Olivier, Dauteuil; Thierry, Nalpas; Martin, Pickford; Brigitte, Senut; Philippe, Lays; Philippe, Bourges; Martine, Bez

    2016-04-01

    This study is based on a coupled basin infilling study and a landforms analysis of the Lake Albert Rift located at the northern part of the western branch of the East African Rift. The basin infilling study is based on both subsurface data and outcrops analysis. The objective was to (1) obtain an age model based on onshore mammals biozones, (2) to reconstruct the 3D architecture of the rift using sequence stratigraphy correlations and seismic data interpretation, (3) to characterize the deformation and its changes through times and (4) to quantify the accommodation for several time intervals. The infilling essentially consists of isopach fault-bounded units composed of lacustrine deposits wherein were characterized two major unconformities dated at 6.2 Ma (Uppermost Miocene) and 2.7 Ma (Pliocene-Pleistocene boundary), coeval with major subsidence and climatic changes. The landforms analysis is based on the characterization and relative dating (geometrical relationships with volcanism) of Ugandan landforms which consist of stepped planation surfaces (etchplains and peplians) and incised valleys. We here proposed a seven-steps reconstruction of the deformation-erosion-sedimentation relationships of the Lake Albert Basin and its catchments: - 55-45 Ma: formation of laterites corresponding to the African Surface during the very humid period of the Lower-Middle Eocene; - 45-22: stripping of the African Surface in response of the beginning of the East-African Dome uplift and formation of a pediplain which associated base level is the Atlantic Ocean; - 17-2.5 Ma: Initiation of the Lake Albert Basin around 17 Ma and creation of local base levels (Lake Albert, Edward and George) on which three pediplains tend to adapt; - 18 - 16 Ma to 6.2 Ma: "Flexural" stage (subsidence rate: 150-200 m/Ma; sedimentation rate 1.3 km3/Ma between 17 and 12 Ma and 0.6 km3/Ma from 12 to 6 Ma) - depocenters location (southern part of Lake Albert Basin) poorly controlled by fault; - 6.2 Ma to 2

  12. Challenges in global microsurgery: A six year review of outcomes at an East African hospital.

    PubMed

    Citron, Isabelle; Galiwango, George; Hodges, Andrew

    2016-02-01

    Free tissue transfer is an invaluable resource for reconstruction of complex defects. There is very little evidence as to the feasibility and outcomes of microsurgery performed in East Africa. This study will analyse outcomes of 114 consecutive free flaps, performed over 6 years at a single plastic surgery unit in Uganda. It aims to demonstrate that despite its challenges, successful microsurgical practice can be set up in East Africa. The notes of 100 consecutive patients who underwent 114 free flaps between 01/06/2009 and 01/07/2015 at CoRSU Hospital, Uganda were analysed. One hundred and fourteen free flaps were performed on 100 patients. The types of free flaps used included free fibula (n = 41), ALT (n = 30), gracillis (n = 8), radial forearm (n = 7), latissimus dorsi (n = 9) and rectus (n = 7) amongst others (n = 12). The most common indications for surgery were head and neck cancer (n = 50), trauma (n = 19), osteomyelitis (n = 18), burns (n = 13), head and neck infection (n = 6). Over the six year period there was an overall 76% survival of the flaps. However in the last two years of the series there was a flap survival rate of over 93% (n = 50). There were 40 non-microsurgical complications including wound infection (n = 10) and graft loss (n = 8). This is one of the first studies to report on the outcomes of free flaps performed at an East African centre. There is a steep but surmountable learning curve to improve microsurgery delivery in East Africa. This study identifies challenges in patient demographics, surgical experience and resources that have been overcome to improve outcomes. Copyright © 2015 British Association of Plastic, Reconstructive and Aesthetic Surgeons. Published by Elsevier Ltd. All rights reserved.

  13. Multiple mantle upwellings in the transition zone beneath the northern East-African Rift system from relative P-wave travel-time tomography

    NASA Astrophysics Data System (ADS)

    Civiero, Chiara; Hammond, James O. S.; Goes, Saskia; Fishwick, Stewart; Ahmed, Abdulhakim; Ayele, Atalay; Doubre, Cecile; Goitom, Berhe; Keir, Derek; Kendall, J.-Michael; Leroy, Sylvie; Ogubazghi, Ghebrebrhan; Rümpker, Georg; Stuart, Graham W.

    2015-09-01

    Mantle plumes and consequent plate extension have been invoked as the likely cause of East African Rift volcanism. However, the nature of mantle upwelling is debated, with proposed configurations ranging from a single broad plume connected to the large low-shear-velocity province beneath Southern Africa, the so-called African Superplume, to multiple lower-mantle sources along the rift. We present a new P-wave travel-time tomography model below the northern East-African, Red Sea, and Gulf of Aden rifts and surrounding areas. Data are from stations that span an area from Madagascar to Saudi Arabia. The aperture of the integrated data set allows us to image structures of ˜100 km length-scale down to depths of 700-800 km beneath the study region. Our images provide evidence of two clusters of low-velocity structures consisting of features with diameter of 100-200 km that extend through the transition zone, the first beneath Afar and a second just west of the Main Ethiopian Rift, a region with off-rift volcanism. Considering seismic sensitivity to temperature, we interpret these features as upwellings with excess temperatures of 100 ± 50 K. The scale of the upwellings is smaller than expected for lower mantle plume sources. This, together with the change in pattern of the low-velocity anomalies across the base of the transition zone, suggests that ponding or flow of deep-plume material below the transition zone may be spawning these upper mantle upwellings. This article was corrected on 28 SEP 2015. See the end of the full text for details.

  14. Outcome of acute East African trypanosomiasis in a Polish traveller treated with pentamidine

    PubMed Central

    2014-01-01

    Background African trypanosomiasis is a parasitic infection sporadically imported to Europe by tourists or immigrants returning from endemic areas. We present the first and an unusual case of East African trypanosomiasis imported to Poland by a patient returning from a tourist trip to Uganda and Rwanda, which was successfully treated with pentamidine. Case presentation A 61-year-old Polish man was admitted to the Department because of high-grade fever and multi-organ dysfunction after a tourist trip to East Africa. He experienced a single tsetse fly bite during a safari trip to the Queen Elizabeth National Park in Uganda. On admission, his clinical status was severe, with high fever of 41ºC, preceded by chills, bleeding from the gums and oral mucosa, haemorrhages at the sites of venipuncture, numerous ecchymoses, fine-spotted skin rash, tachycardia, hepatosplenomegaly, dehydration, jaundice, dyspnoea, hypoxaemia, generalised oedema and oliguria. There was a typical non-painful trypanosomal chancre with central necrosis and peripheral erythema on his left arm. Laboratory investigations showed leucopenia, thrombocytopenia, haemolytic anaemia, hyperbilirubinaemia, hypoglycaemia, elevated creatinine and urea, high activity of aminotransferases, elevated levels of inflammatory markers, hypoproteinaemia, proteinuria, abnormal clotting and bleeding times, low fibrinogen level, metabolic acidosis, and electrolyte disturbances. A peripheral blood smear showed numerous Trypanosoma brucei trypomastigotes with a massive parasitaemia of 100,000/μl. T. brucei rhodesiense subspecies was finally identified on the basis of the characteristic serum resistance-associated gene using a polymerase chain reaction, and a seroconversion of specific immunoglobulin M and G antibodies in the peripheral blood by enzyme-linked immunosorbent assay. Serological tests for T. brucei gambiense subspecies were negative. A severe clinical course of acute rhodesiense trypanosomiasis with renal

  15. Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations.

    PubMed

    van de Loosdrecht, Marieke; Bouzouggar, Abdeljalil; Humphrey, Louise; Posth, Cosimo; Barton, Nick; Aximu-Petri, Ayinuer; Nickel, Birgit; Nagel, Sarah; Talbi, El Hassan; El Hajraoui, Mohammed Abdeljalil; Amzazi, Saaïd; Hublin, Jean-Jacques; Pääbo, Svante; Schiffels, Stephan; Meyer, Matthias; Haak, Wolfgang; Jeong, Choongwon; Krause, Johannes

    2018-05-04

    North Africa is a key region for understanding human history, but the genetic history of its people is largely unknown. We present genomic data from seven 15,000-year-old modern humans, attributed to the Iberomaurusian culture, from Morocco. We find a genetic affinity with early Holocene Near Easterners, best represented by Levantine Natufians, suggesting a pre-agricultural connection between Africa and the Near East. We do not find evidence for gene flow from Paleolithic Europeans to Late Pleistocene North Africans. The Taforalt individuals derive one-third of their ancestry from sub-Saharan Africans, best approximated by a mixture of genetic components preserved in present-day West and East Africans. Thus, we provide direct evidence for genetic interactions between modern humans across Africa and Eurasia in the Pleistocene. Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

  16. An interdisciplinary approach for groundwater management in area contaminated by fluoride in East African Rift System

    NASA Astrophysics Data System (ADS)

    Da Pelo, Stefania; Melis, M. Teresa; Dessì, Francesco; Pistis, Marco; Funedda, Antonio; Oggiano, Giacomo; Carletti, Alberto; Soler Gil, Albert; Barbieri, Manuela; Pittalis, Daniele; Ghiglieri, Giorgio

    2017-04-01

    Groundwater is the main source of fresh water supply for most of the rural communities in Africa (approximately 75% of Africans has confidence in groundwater as their major source of drinking water). Many African countries has affected by high fluoride concentration in groundwater (up to 90 mg/L), generating the contamination of waters, soils and food, in particular in the eastern part of the continent. It seems that fluoride concentration is linked to geology of the Rift Valley: geogenic occurrence of fluoride is often connected to supergenic enrichment due to the weathering of alkaline volcanic rocks, fumaric gases and presence of thermal waters. The H2020 project FLOWERED (de-FLuoridation technologies for imprOving quality of WatEr and agRo-animal products along the East African Rift Valley in the context of aDaptation to climate change) wish to address environmental and health (human and animal) issues associated to the fluoride contamination in the African Rift Valley, in particular in three case study area located in Ethiopia, Tanzania and Kenya. FLOWERED aims to develop an integrated, sustainable and participative water and agriculture management at a cross-boundary catchment scale through a strong interdisciplinary research approach. It implies knowledge of geology, hydrogeology, mineralogy, geochemistry, agronomy, crop and animal sciences, engineering, technological sciences, data management and software design, economics and communication. The proposed approach is based on a detailed knowledge of the hydrogeological setting, with the identification and mapping of the specific geological conditions of water contamination and its relation with the different land uses. The East African Rift System (EARS) groundwater circulation and storage, today already poorly understood, is characterized by a complex arrangement of aquifers. It depends on the type of porosity and permeability created during and after the rock formation, and is strongly conditioned by the

  17. The Making of the African mtDNA Landscape

    PubMed Central

    Salas, Antonio; Richards, Martin; De la Fe, Tomás; Lareu, María-Victoria; Sobrino, Beatriz; Sánchez-Diz, Paula; Macaulay, Vincent; Carracedo, Ángel

    2002-01-01

    Africa presents the most complex genetic picture of any continent, with a time depth for mitochondrial DNA (mtDNA) lineages >100,000 years. The most recent widespread demographic shift within the continent was most probably the Bantu dispersals, which archaeological and linguistic evidence suggest originated in West Africa 3,000–4,000 years ago, spreading both east and south. Here, we have carried out a thorough phylogeographic analysis of mtDNA variation in a total of 2,847 samples from throughout the continent, including 307 new sequences from southeast African Bantu speakers. The results suggest that the southeast Bantu speakers have a composite origin on the maternal line of descent, with ∼44% of lineages deriving from West Africa, ∼21% from either West or Central Africa, ∼30% from East Africa, and ∼5% from southern African Khoisan-speaking groups. The ages of the major founder types of both West and East African origin are consistent with the likely timing of Bantu dispersals, with those from the west somewhat predating those from the east. Despite this composite picture, the southeastern African Bantu groups are indistinguishable from each other with respect to their mtDNA, suggesting that they either had a common origin at the point of entry into southeastern Africa or have undergone very extensive gene flow since. PMID:12395296

  18. Comparison of simulated and reconstructed variations in East African hydroclimate over the last millennium

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Klein, Francois; Goosse, Hugues; Graham, Nicholas E.

    The multi-decadal to centennial hydroclimate changes in East Africa over the last millennium are studied by comparing the results of forced transient simulations by six general circulation models (GCMs) with published hydroclimate reconstructions from four lakes: Challa and Naivasha in equatorial East Africa, and Masoko and Malawi in southeastern inter-tropical Africa. All GCMs simulate fairly well the unimodal seasonal cycle of precipitation in the Masoko–Malawi region, while the bimodal seasonal cycle characterizing the Challa–Naivasha region is generally less well captured by most models. Model results and lake-based hydroclimate reconstructions display very different temporal patterns over the last millennium. Additionally, theremore » is no common signal among the model time series, at least until 1850. This suggests that simulated hydroclimate fluctuations are mostly driven by internal variability rather than by common external forcing. After 1850, half of the models simulate a relatively clear response to forcing, but this response is different between the models. Overall, the link between precipitation and tropical sea surface temperatures (SSTs) over the pre-industrial portion of the last millennium is stronger and more robust for the Challa–Naivasha region than for the Masoko–Malawi region. At the inter-annual timescale, last-millennium Challa–Naivasha precipitation is positively (negatively) correlated with western (eastern) Indian Ocean SST, while the influence of the Pacific Ocean appears weak and unclear. Although most often not significant, the same pattern of correlations between East African rainfall and the Indian Ocean SST is still visible when using the last-millennium time series smoothed to highlight centennial variability, but only in fixed-forcing simulations. Furthermore, this means that, at the centennial timescale, the effect of (natural) climate forcing can mask the imprint of internal climate variability in large

  19. Comparison of simulated and reconstructed variations in East African hydroclimate over the last millennium

    DOE PAGES

    Klein, Francois; Goosse, Hugues; Graham, Nicholas E.; ...

    2016-07-13

    The multi-decadal to centennial hydroclimate changes in East Africa over the last millennium are studied by comparing the results of forced transient simulations by six general circulation models (GCMs) with published hydroclimate reconstructions from four lakes: Challa and Naivasha in equatorial East Africa, and Masoko and Malawi in southeastern inter-tropical Africa. All GCMs simulate fairly well the unimodal seasonal cycle of precipitation in the Masoko–Malawi region, while the bimodal seasonal cycle characterizing the Challa–Naivasha region is generally less well captured by most models. Model results and lake-based hydroclimate reconstructions display very different temporal patterns over the last millennium. Additionally, theremore » is no common signal among the model time series, at least until 1850. This suggests that simulated hydroclimate fluctuations are mostly driven by internal variability rather than by common external forcing. After 1850, half of the models simulate a relatively clear response to forcing, but this response is different between the models. Overall, the link between precipitation and tropical sea surface temperatures (SSTs) over the pre-industrial portion of the last millennium is stronger and more robust for the Challa–Naivasha region than for the Masoko–Malawi region. At the inter-annual timescale, last-millennium Challa–Naivasha precipitation is positively (negatively) correlated with western (eastern) Indian Ocean SST, while the influence of the Pacific Ocean appears weak and unclear. Although most often not significant, the same pattern of correlations between East African rainfall and the Indian Ocean SST is still visible when using the last-millennium time series smoothed to highlight centennial variability, but only in fixed-forcing simulations. Furthermore, this means that, at the centennial timescale, the effect of (natural) climate forcing can mask the imprint of internal climate variability in large

  20. "Getting tested is almost like going to the Salem witch trials": discordant discourses between Western public health messages and sociocultural expectations surrounding HIV testing among East African immigrant women.

    PubMed

    De Jesus, Maria; Carrete, Claudia; Maine, Cathleen; Nalls, Patricia

    2015-01-01

    Washington, DC, has the highest AIDS diagnosis rate in the USA, and Black women are disproportionately affected. Although HIV testing is the first entryway into vital treatment services, evidence reveals that foreign-born blacks have a lower rate of recent HIV testing than US-born blacks. To date, however, there are no studies that examine the culture-specific perceptions of HIV testing among East African immigrant women (who comprise a large share of Black Africans in DC) to better understand their potential barriers to testing. Adopting the PEN-3 cultural model as our theoretical framework, the main objective of this study was to examine East African women's HIV testing perceptions and partner communication norms. Between October 2012 and March 2013, trained interviewers conducted a total of 25 interviews with East African women in the Washington, DC, metropolitan area. For triangulation purposes, data collection consisted of both in-depth, semi-structured interviews and cognitive interviews, in which participants were administered a quantitative survey and assessed on how they interpreted items. Qualitative thematic analysis revealed a systematic pattern of discordant responses across participants. While they were aware of messages related to Western public health discourse surrounding HIV testing (e.g., Everyone should get tested for HIV; One should talk to one's spouse about HIV testing), divergent sociocultural expectations rooted in cultural and religious beliefs prevailed (e.g., Getting an HIV test brings shame to the person who got tested and to one's family; it implies one is engaging in immoral behavior; One should not talk with one's spouse about HIV testing; doing so breaks cultural norms). Implications of using a culture-centered model to examine the role of sociocultural expectations in HIV prevention research and to develop culturally responsive prevention strategies are discussed.

  1. Religious Involvement, Social Support, and Health Among African-American Women on the East Side of Detroit

    PubMed Central

    Van Olphen, Juliana; Schulz, Amy; Israel, Barbara; Chatters, Linda; Klem, Laura; Parker, Edith; Williams, David

    2003-01-01

    BACKGROUND A significant body of research suggests that religious involvement is related to better mental and physical health. Religion or spirituality was identified as an important health protective factor by women participating in the East Side Village Health Worker Partnership (ESVHWP), a community-based participatory research initiative on Detroit's east side. However, relatively little research to date has examined the mechanisms through which religion may exert a positive effect on health. OBJECTIVE The research presented here examines the direct effects of different forms of religious involvement on health, and the mediating effects of social support received in the church as a potential mechanism that may account for observed relationships between church attendance and health. DESIGN This study involved a random sample household survey of 679 African-American women living on the east side of Detroit, conducted as part of the ESVHWP. MAIN RESULTS Results of multivariate analyses show that respondents who pray less often report a greater number of depressive symptoms, and that faith, as an important source of strength in one's daily life, is positively associated with chronic conditions such as asthma or arthritis. Tests of the mediating effect of social support in the church indicated that social support received from church members mediates the positive relationship between church attendance and specific indicators of health. CONCLUSIONS These findings are consistent with the hypothesis that one of the major ways religious involvement benefits health is through expanding an individual's social connections. The implications of these findings for research and practice are discussed. PMID:12848838

  2. Content of a novel online collection of traditional east African food habits (1930s-1960s): data collected by the Max-Planck-Nutrition Research Unit, Bumbuli, Tanzania.

    PubMed

    Raschke, Verena; Oltersdorf, Ulrich; Elmadfa, Ibrahim; Wahlqvist, Mark L; Cheema, Birinder Sb; Kouris-Blazos, Antigone

    2007-01-01

    Knowledge of traditional African foods and food habits has been, and continues to be, systematically extirpated. With the primary intent of collating data for our online collection documenting traditional African foods and food habits (available at: www.healthyeatingclub.com/Africa/), we reviewed the Oltersdorf Collection, 75 observational investigations conducted throughout East Africa (i.e. Tanzania, Kenya, and Uganda) between the 1930s and 1960s as compiled by the Max Planck Nutrition Research Unit, formerly located in Bumbuli, Tanzania. Data were categorized as follows: (1) food availability, (2) chemical composition, (3) staple foods (i.e. native crops, cereals, legumes, roots and tubers, vegetables, fruits, spices, oils and fats, beverages, and animal foods), (4) food preparation and culture, and (5) nutrient intake and health status indicators. Many of the traditional foods identified, including millet, sorghum, various legumes, root and tubers, green leafy vegetables, plant oils and wild meats have known health benefits. Food preparatory practices during this period, including boiling and occasional roasting are superior to current practices which favor frying and deep-frying. Overall, our review and data extraction provide reason to believe that a diversified diet was possible for the people of East Africa during this period (1930s-1960s). There is a wealth of knowledge pertaining to traditional East African foods and food habits within the Oltersdorf Collection. These data are currently available via our online collection. Future efforts should contribute to collating and honing knowledge of traditional foods and food habits within this region, and indeed throughout the rest of Africa. Preserving and disseminating this knowledge may be crucial for abating projected trends for non-communicable diseases and malnutrition in Africa and abroad.

  3. Perceptions and Misperceptions: The Middle East and South Africa.

    ERIC Educational Resources Information Center

    Moore, Michael; Tyson, G. A.

    1990-01-01

    Reports findings of a study examining the opinions and awareness level of South African, Israeli, and United States undergraduates about conflicts in either the Middle East or South Africa. Finds religious and racial characteristics determining differences in knowledge level and political support. Reveals South African Blacks and U.S. students…

  4. East Africa

    NASA Technical Reports Server (NTRS)

    2002-01-01

    This image shows the East African nations of Ethiopia, Eritrea, and Somalia, as well as portions of Kenya, Sudan, Yemen, and Saudi Arabia. Dominating the scene are the green Ethiopian Highlands. With altitudes as high as 4,620 meters (15,157 feet), the highlands pull moisture from the arid air, resulting in relatively lush vegetation. In fact, coffee-one of the world's most prized crops-originated here. To the north (above) the highlands is Eritrea, which became independent in 1993. East (right) of Ethiopia is Somalia, jutting out into the Indian Ocean. The Sea-viewing Wide Field-of-view Sensor (SeaWiFS) captured this true-color image on November 29, 2000. Provided by the SeaWiFS Project, NASA/Goddard Space Flight Center, and ORBIMAGE

  5. ‘Getting tested is almost like going to the Salem witch trials’: Discordant discourses between western public health messages and sociocultural expectations surrounding HIV testing among East African immigrant women

    PubMed Central

    DE JESUS, Maria; CARRETE, Claudia; MAINE, Cathleen; NALLS, Patricia

    2015-01-01

    Washington, DC has the highest AIDS diagnosis rate in the United States and Black women are disproportionately affected. Although HIV testing is the first entryway into vital treatment services, evidence reveals that foreign-born blacks have a lower rate of recent HIV testing than U.S.-born blacks. To date, however, there are no studies that examine the culture-specific perceptions of HIV testing among East African immigrant women (who comprise a large share of Black Africans in DC) to better understand their potential barriers to testing. Adopting the PEN-3 cultural model as our theoretical framework, the main objective of this study was to examine East African women’s HIV testing perceptions and partner communication norms. Between October 2012 and March 2013, trained interviewers conducted a total of 25 interviews with East African women in the Washington DC Metropolitan area. For triangulation purposes, data collection consisted of both in-depth, semi-structured interviews and cognitive interviews, in which participants were administered a quantitative survey and assessed on how they interpreted items. Qualitative thematic analysis revealed a systematic pattern of discordant responses across participants. While they were aware of messages related to western public health discourse surrounding HIV testing (e.g., Everyone should get tested for HIV; One should talk to one’s spouse about HIV testing), divergent sociocultural expectations rooted in cultural and religious beliefs prevailed (e.g., Getting an HIV test brings shame to the person who got tested and to one’s family; it implies one is engaging in immoral behavior; One should not talk with one’s spouse about HIV testing; doing so breaks cultural norms). Implications of using a culture-centered model to examine the role of sociocultural expectations in HIV prevention research and to develop culturally responsive prevention strategies are discussed. PMID:25616443

  6. Defining Genomic Changes in Triple-Negative Breast Cancer in Women of African Descent

    DTIC Science & Technology

    2012-06-01

    African and African - American breast cancer cases. Gene Expression Array Studies The 31 triple negative Kijabe samples were... American Adjacent Normal Breast Tissue PI: Pegram & Baumbach Defining Genomic Changes in Triple Negative Breast Cancer in Women of African ...Tissues from African - American and East African Patients with Triple Negative Breast

  7. Exploring Pacific Climate Variability and Its Impacts on East African Water Resources and Food Security

    NASA Astrophysics Data System (ADS)

    Funk, C. C.; Hoerling, M. P.; Hoell, A.; Liebmann, B.; Verdin, J. P.; Eilerts, G.

    2014-12-01

    In 8 out the past 15 boreal springs (1999, 2000, 2004, 2008, 2009, 2011, 2012, and 2013), substantial parts of eastern East Africa experienced very low boreal spring rains. These rainfall deficits have triggered widespread food insecurity, and even contributed to the outbreak of famine conditions in Somalia in 2011. At both seasonal and decadal time scales, new science supported by the USAID Famine Early Warning Systems Network seeks to understand the mechanisms producing these droughts. We present research suggesting that the ultimate and proximate causes of these increases in aridity are i) stronger equatorial Pacific SST gradients and ii) associated increases in the strength of the Indo-Pacific Walker circulation. Using observations and new modeling ensembles, we explore the relative contributions of Pacific Decadal Variability (PDV) and global warming under warm and cold east Pacific Ocean states. This question is addressed in two ways: by using atmospheric GCMs forced with full and ENSO-only SSTs, and ii) by decomposing coupled ocean-atmosphere climate simulations into PDV and non-PDV components. These analyses allow us to explore the Walker circulation's sensitivity to climate change under various PDV states, and inform a tentative bracketing of 2030 climate conditions. We conclude by discussing links to East African development. Regions of high rainfall sensitivity are delineated and intersected with recent changes in population and land cover/land use. The interaction of elevation and climate is shown to create climatically secure regions that are likely to remain viable even under drier and warmer conditions; such regions may be logical targets for agricultural intensification. Conversely, arid low elevation regions are likely to experience substantial temperature impacts. Continued expansion into these areas may effectively create more 'drought' even if rainfall increases.

  8. Constraining the Composition of the Subcontinental Lithospheric Mantle Beneath the East African Rift: FTIR Analysis of Water in Spinel Peridotite Mantle Xenoliths

    NASA Technical Reports Server (NTRS)

    Erickson, Stephanie Gwen; Nelson, Wendy R.; Peslier, Anne H.; Snow, Jonathan E.

    2014-01-01

    The East African Rift System was initiated by the impingement of the Afar mantle plume on the base of the non-cratonic continental lithosphere (assembled during the Pan-African Orogeny), producing over 300,000 kmof continental flood basalts approx.30 Ma ago. The contribution of the subcontinental lithospheric mantle (SCLM) to this voluminous period of volcanism is implied based on basaltic geochemical and isotopic data. However, the role of percolating melts on the SCLM composition is less clear. Metasomatism is capable of hybridizing or overprinting the geochemical signature of the SCLM. In addition, models suggest that adding fluids to lithospheric mantle affects its stability. We investigated the nature of the SCLM using Fourier transform infrared spectrometry (FTIR) to measure water content in mantle xenoliths entrained in young (1 Ma) basaltic lavas from the Ethiopian volcanic province. The mantle xenoliths consist dominantly of spinel lherzolites and are composed of nominally anhydrous minerals, which can contain trace water as H in mineral defects. Eleven mantle xenoliths come from the Injibara-Gojam region and two from the Mega-Sidamo region. Water abundances of olivines in six samples are 1-5ppm H2O while the rest are below the limit of detection (<0.5 ppm H2O); orthopyroxene and clinopyroxene contain 80-238 and 111-340 ppm wt H2O, respectively. Two xenoliths have higher water contents - a websterite (470 ppm) and dunite (229 ppm), consistent with involvement of ascending melts. The low water content of the upper SCLM beneath Ethiopia is as dry as the oceanic mantle except for small domains represented by percolating melts. Consequently, rifting of the East African lithosphere may not have been facilitated by a hydrated upper mantle.

  9. A Scoring Tool to Identify East African HIV-1 Serodiscordant Partnerships with a High Likelihood of Pregnancy.

    PubMed

    Heffron, Renee; Cohen, Craig R; Ngure, Kenneth; Bukusi, Elizabeth; Were, Edwin; Kiarie, James; Mugo, Nelly; Celum, Connie; Baeten, Jared M

    2015-01-01

    HIV-1 prevention programs targeting HIV-1 serodiscordant couples need to identify couples that are likely to become pregnant to facilitate discussions about methods to minimize HIV-1 risk during pregnancy attempts (i.e. safer conception) or effective contraception when pregnancy is unintended. A clinical prediction tool could be used to identify HIV-1 serodiscordant couples with a high likelihood of pregnancy within one year. Using standardized clinical prediction methods, we developed and validated a tool to identify heterosexual East African HIV-1 serodiscordant couples with an increased likelihood of becoming pregnant in the next year. Datasets were from three prospectively followed cohorts, including nearly 7,000 couples from Kenya and Uganda participating in HIV-1 prevention trials and delivery projects. The final score encompassed the age of the woman, woman's number of children living, partnership duration, having had condomless sex in the past month, and non-use of an effective contraceptive. The area under the curve (AUC) for the probability of the score to correctly predict pregnancy was 0.74 (95% CI 0.72-0.76). Scores ≥ 7 predicted a pregnancy incidence of >17% per year and captured 78% of the pregnancies. Internal and external validation confirmed the predictive ability of the score. A pregnancy likelihood score encompassing basic demographic, clinical and behavioral factors defined African HIV-1 serodiscordant couples with high one-year pregnancy incidence rates. This tool could be used to engage African HIV-1 serodiscordant couples in counseling discussions about fertility intentions in order to offer services for safer conception or contraception that align with their reproductive goals.

  10. Repeated trans-watershed hybridization among haplochromine cichlids (Cichlidae) was triggered by Neogene landscape evolution.

    PubMed

    Schwarzer, Julia; Swartz, Ernst Roelof; Vreven, Emmanuel; Snoeks, Jos; Cotterill, Fenton Peter David; Misof, Bernhard; Schliewen, Ulrich Kurt

    2012-11-07

    The megadiverse haplochromine cichlid radiations of the East African lakes, famous examples of explosive speciation and adaptive radiation, are according to recent studies, introgressed by different riverine lineages. This study is based on the first comprehensive mitochondrial and nuclear DNA dataset from extensive sampling of riverine haplochromine cichlids. It includes species from the lower River Congo and Angolan (River Kwanza) drainages. Reconstruction of phylogenetic hypotheses revealed the paradox of clearly discordant phylogenetic signals. Closely related mtDNA haplotypes are distributed thousands of kilometres apart and across major African watersheds, whereas some neighbouring species carry drastically divergent mtDNA haplotypes. At shallow and deep phylogenetic layers, strong signals of hybridization are attributed to the complex Late Miocene/Early Pliocene palaeohistory of African rivers. Hybridization of multiple lineages across changing watersheds shaped each of the major haplochromine radiations in lakes Tanganyika, Victoria, Malawi and the Kalahari Palaeolakes, as well as a miniature species flock in the Congo basin (River Fwa). On the basis of our results, introgression occurred not only on a spatially restricted scale, but massively over almost the whole range of the haplochromine distribution. This provides an alternative view on the origin and exceptional high diversity of this enigmatic vertebrate group.

  11. Design and coverage of high throughput genotyping arrays optimized for individuals of East Asian, African American, and Latino race/ethnicity using imputation and a novel hybrid SNP selection algorithm.

    PubMed

    Hoffmann, Thomas J; Zhan, Yiping; Kvale, Mark N; Hesselson, Stephanie E; Gollub, Jeremy; Iribarren, Carlos; Lu, Yontao; Mei, Gangwu; Purdy, Matthew M; Quesenberry, Charles; Rowell, Sarah; Shapero, Michael H; Smethurst, David; Somkin, Carol P; Van den Eeden, Stephen K; Walter, Larry; Webster, Teresa; Whitmer, Rachel A; Finn, Andrea; Schaefer, Catherine; Kwok, Pui-Yan; Risch, Neil

    2011-12-01

    Four custom Axiom genotyping arrays were designed for a genome-wide association (GWA) study of 100,000 participants from the Kaiser Permanente Research Program on Genes, Environment and Health. The array optimized for individuals of European race/ethnicity was previously described. Here we detail the development of three additional microarrays optimized for individuals of East Asian, African American, and Latino race/ethnicity. For these arrays, we decreased redundancy of high-performing SNPs to increase SNP capacity. The East Asian array was designed using greedy pairwise SNP selection. However, removing SNPs from the target set based on imputation coverage is more efficient than pairwise tagging. Therefore, we developed a novel hybrid SNP selection method for the African American and Latino arrays utilizing rounds of greedy pairwise SNP selection, followed by removal from the target set of SNPs covered by imputation. The arrays provide excellent genome-wide coverage and are valuable additions for large-scale GWA studies. Copyright © 2011 Elsevier Inc. All rights reserved.

  12. Identification of four novel HLA-B alleles, B*1590, B*1591, B*2726, and B*4705, from an East African population by high-resolution sequence-based typing.

    PubMed

    Luo, M; Mao, X; Plummer, F A

    2005-02-01

    We report here four novel HLA-B alleles, B*1590, B*1591, B*2726, and B*4705, identified from an East African population during sequence-based HLA-B typing. The novel alleles were confirmed by sequencing two separate polymerase chain reaction products, and by molecular cloning and sequencing multiple clones. B*1590 is identical to B*1510 at exon 2 and exon 3, except for a difference (GCCGTC) at codon 158. Sequence differences at codon 152 (GAGGTG) and codon 167 (TGGTCG) differentiate B*1591 from B*1503 at exon 3. B*2726 is identical to B*2708 at exon 2 and exon 3, except for a difference (AAGCAG) at codon 70. B*4705 was identified in three Kenyan women. The allele is identical to B*47010101/02 at exon 2 and exon 3, except for differences at codon 97 (AGGAAT) and codon 99 (TTTTAT). These new alleles have been named by the WHO Nomenclature Committee. Identification of these novel HLA-B alleles reflects the genetic diversity of this East African population.

  13. Imaging rifting at the lithospheric scale in the northern East African Rift using S-to-P receiver functions

    NASA Astrophysics Data System (ADS)

    Lavayssiere, A.; Rychert, C.; Harmon, N.; Keir, D.; Hammond, J. O. S.; Kendall, J. M.; Leroy, S. D.; Doubre, C.

    2017-12-01

    The lithosphere is modified during rifting by a combination of mechanical stretching, heating and potentially partial melt. We image the crust and upper mantle discontinuity structure beneath the northern East African Rift System (EARS), a unique tectonically active continental rift exposing along strike the transition from continental rifting in the Main Ethiopian rift (MER) to incipient seafloor spreading in Afar and the Red Sea. S-to-P receiver functions from 182 stations across the northern EARS were generated from 3688 high quality waveforms using a multitaper technique and then migrated to depth using a regional velocity model. Waveform modelling of data stacked in large conversion point bins confirms the depth and strength of imaged discontinuities. We image the Moho at 29.6±4.7 km depth beneath the Ethiopian plateaux with a variability in depth that is possibly due to lower crustal intrusions. The crust is 27.3±3.9 km thick in the MER and thinner in northern Afar, 17.5±0.7 km. The model requires a 3±1.2% reduction in shear velocity with increasing depth at 68.5±1.5 km beneath the Ethiopian plateaux, consistent with the lithosphere-asthenosphere boundary (LAB). We do not resolve a LAB beneath Afar and the MER. This is likely associated with partial melt near the base of the lithosphere, reducing the velocity contrast between the melt-intruded lithosphere and the partially molten asthenosphere. We identify a 4.5±0.7% increase in velocity with depth at 91±3 km beneath the MER. This change in velocity is consistent with the onset of melting found by previous receiver functions and petrology studies. Our results provide independent constraints on the depth of melt production in the asthenosphere and suggest melt percolation through the base of the lithosphere beneath the northernmost East African rift.

  14. The Climate-Population Nexus in the East African Horn: Emerging Degradation Trends in Rangeland and Pastoral Livelihood Zones

    NASA Astrophysics Data System (ADS)

    Pricope, N. G.; Husak, G. J.; Funk, C. C.; Lopez-Carr, D.

    2014-12-01

    Increasing climate variability and extreme weather conditions along with declining trends in both rainfall and temperature represent major risk factors affecting agricultural production and food security in many regions of the world. We identify regions where significant rainfall decrease from 1979-2011 over the entire continent of Africa couples with significant human population density increase. The rangelands of Ethiopia, Kenya, and Somalia in the East African Horn remain one of the world's most food insecure regions, yet have significantly increasing human populations predominantly dependent on pastoralist and agro-pastoralist livelihoods. Vegetation in this region is characterized by a variable mosaic of land covers, generally dominated by grasslands necessary for agro-pastoralism, interspersed by woody vegetation. Recent assessments indicate that widespread degradation is occurring, adversely impacting fragile ecosystems and human livelihoods. Using two underutilized MODIS products, we observe significant changes in vegetation patterns and productivity over the last decade all across the East African Horn. We observe significant vegetation browning trends in areas experiencing drying precipitation trends in addition to increasing population pressures. We also found that the drying precipitation trends only partially statistically explain the vegetation browning trends, further indicating that other factors such as population pressures and land use changes are responsible for the observed declining vegetation health. Furthermore, we show that the general vegetation browning trends persist even during years with normal rainfall conditions such as 2012, indicating potential long-term degradation of rangelands on which approximately 10 million people depend. These findings have serious implications for current and future regional food security monitoring and forecasting as well as for mitigation and adaptation strategies in a region where population is expected

  15. Mapping International University Partnerships Identified by East African Universities as Strengthening Their Medicine, Nursing, and Public Health Programs.

    PubMed

    Yarmoshuk, Aaron N; Guantai, Anastasia Nkatha; Mwangu, Mughwira; Cole, Donald C; Zarowsky, Christina

    International university partnerships are recommended for increasing the capacity of sub-Saharan African universities. Many publications describe individual partnerships and projects, and tools are available for guiding collaborations, but systematic mappings of the basic, common characteristics of partnerships are scarce. To document and categorize the international interuniversity partnerships deemed significant to building the capacity of medicine, nursing, and public health programs of 4 East African universities. Two universities in Kenya and 2 in Tanzania were purposefully selected. Key informant interviews, conducted with 42 senior representatives of the 4 universities, identified partnerships they considered significant for increasing the capacity of their institutions' medicine, nursing, and public health programs in education, research, or service. Interviews were transcribed and analyzed. Partners were classified by country of origin and corresponding international groupings, duration, programs, and academic health science components. One hundred twenty-nine university-to-university partnerships from 23 countries were identified. Each university reported between 25 and 36 international university partners. Seventy-four percent of partnerships were with universities in high-income countries, 15% in low- and middle-income countries, and 11% with consortia. Seventy percent included medicine, 37% nursing, and 45% public health; 15% included all 3 programs. Ninety-two percent included an education component, 47% research, and 24% service; 12% included all 3 components. This study confirms the rapid growth of interuniversity cross-border health partnerships this century. It also finds, however, that there is a pool of established international partnerships from numerous countries at each university. Most partnerships that seek to strengthen universities in East Africa should likely ensure they have a significant education component. Universities should make

  16. DOE Office of Scientific and Technical Information (OSTI.GOV)

    Tiercelin, J.J.; Lezzar, K.E.; Richert, J.P.

    Oil is known from lacustrine basins of the east African rift. The geology of such basins is complex and different depending on location in the eastern and western branches. The western branch has little volcanism, leading to long-lived basins, such as Lake Tanganyika, whereas a large quantity of volcanics results in the eastern branch characterized by ephemeral basins, as the Baringo-Bogoria basin in Kenya. The Baringo-Bogoria basin is a north-south half graben formed in the middle Pleistocene and presently occupied by the hypersaline Lake Bogoria and the freshwater Lake Baringo. Lake Bogoria is fed by hot springs and ephemeral streamsmore » controlled by grid faults bounding the basin to the west. The sedimentary fill is formed by cycles of organic oozes having a good petroleum potential and evaporites. On the other hand, and as a consequence of the grid faults, Lake Baringo is fed by permanent streams bringing into the basin large quantities of terrigenous sediments. Lake Tanganyika is a meromictic lake 1470 m deep and 700 km long, of middle Miocene age. It is subdivided into seven asymmetric half grabens separated by transverse ridges. The sedimentary fill is thick and formed by organic oozes having a very good petroleum potential. In contrast to Bogoria, the lateral distribution of organic matter is characterized by considerable heterogeneity due to the existence of structural blocks or to redepositional processes.« less

  17. Body size evolution of a shell-brooding cichlid fish from Lake Tanganyika.

    PubMed

    Takahashi, T; Ota, K

    2016-12-01

    The substrate-brooding cichlid fish Telmatochromis temporalis in Lake Tanganyika demonstrates a simple example of ecological speciation between normal and dwarf morphs through divergent natural selection on body size. The dwarf morph most likely evolved from the ancestral normal morph; therefore, elucidating the evolution of its small body size is a key to understanding this ecological speciation event. Previous studies suggest that the small body size of the dwarf morph is an adaptation to the use of empty snail shells as shelters (males) and spawning sites (females), but this idea has not been fully evaluated. Combining original and previously published information, this study compared likelihood values to determine the primary factor that would be responsible for regulating the body size of the dwarf morph. Male body size is most likely regulated by the ability to turn within shells, which may influence the predation avoidance of adult fish. Females are smaller than males, and their body size is most likely regulated by the ability to lay eggs in the small spaces within shells close to the shell apices where predation risk on eggs is lower. This study provides new evidence supporting the hypothesis that different natural selection factors affected body size of the different sexes of the dwarf morph, which has not been reported in other animal species. © 2016 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2016 European Society For Evolutionary Biology.

  18. Complex population structure in African village dogs and its implications for inferring dog domestication history

    PubMed Central

    Boyko, Adam R.; Boyko, Ryan H.; Boyko, Corin M.; Parker, Heidi G.; Castelhano, Marta; Corey, Liz; Degenhardt, Jeremiah D.; Auton, Adam; Hedimbi, Marius; Kityo, Robert; Ostrander, Elaine A.; Schoenebeck, Jeffrey; Todhunter, Rory J.; Jones, Paul; Bustamante, Carlos D.

    2009-01-01

    High genetic diversity of East Asian village dogs has recently been used to argue for an East Asian origin of the domestic dog. However, global village dog genetic diversity and the extent to which semiferal village dogs represent distinct, indigenous populations instead of admixtures of various dog breeds has not been quantified. Understanding these issues is critical to properly reconstructing the timing, number, and locations of dog domestication. To address these questions, we sampled 318 village dogs from 7 regions in Egypt, Uganda, and Namibia, measuring genetic diversity >680 bp of the mitochondrial D-loop, 300 SNPs, and 89 microsatellite markers. We also analyzed breed dogs, including putatively African breeds (Afghan hounds, Basenjis, Pharaoh hounds, Rhodesian ridgebacks, and Salukis), Puerto Rican street dogs, and mixed breed dogs from the United States. Village dogs from most African regions appear genetically distinct from non-native breed and mixed-breed dogs, although some individuals cluster genetically with Puerto Rican dogs or United States breed mixes instead of with neighboring village dogs. Thus, African village dogs are a mosaic of indigenous dogs descended from early migrants to Africa, and non-native, breed-admixed individuals. Among putatively African breeds, Pharaoh hounds, and Rhodesian ridgebacks clustered with non-native rather than indigenous African dogs, suggesting they have predominantly non-African origins. Surprisingly, we find similar mtDNA haplotype diversity in African and East Asian village dogs, potentially calling into question the hypothesis of an East Asian origin for dog domestication. PMID:19666600

  19. Complex population structure in African village dogs and its implications for inferring dog domestication history.

    PubMed

    Boyko, Adam R; Boyko, Ryan H; Boyko, Corin M; Parker, Heidi G; Castelhano, Marta; Corey, Liz; Degenhardt, Jeremiah D; Auton, Adam; Hedimbi, Marius; Kityo, Robert; Ostrander, Elaine A; Schoenebeck, Jeffrey; Todhunter, Rory J; Jones, Paul; Bustamante, Carlos D

    2009-08-18

    High genetic diversity of East Asian village dogs has recently been used to argue for an East Asian origin of the domestic dog. However, global village dog genetic diversity and the extent to which semiferal village dogs represent distinct, indigenous populations instead of admixtures of various dog breeds has not been quantified. Understanding these issues is critical to properly reconstructing the timing, number, and locations of dog domestication. To address these questions, we sampled 318 village dogs from 7 regions in Egypt, Uganda, and Namibia, measuring genetic diversity >680 bp of the mitochondrial D-loop, 300 SNPs, and 89 microsatellite markers. We also analyzed breed dogs, including putatively African breeds (Afghan hounds, Basenjis, Pharaoh hounds, Rhodesian ridgebacks, and Salukis), Puerto Rican street dogs, and mixed breed dogs from the United States. Village dogs from most African regions appear genetically distinct from non-native breed and mixed-breed dogs, although some individuals cluster genetically with Puerto Rican dogs or United States breed mixes instead of with neighboring village dogs. Thus, African village dogs are a mosaic of indigenous dogs descended from early migrants to Africa, and non-native, breed-admixed individuals. Among putatively African breeds, Pharaoh hounds, and Rhodesian ridgebacks clustered with non-native rather than indigenous African dogs, suggesting they have predominantly non-African origins. Surprisingly, we find similar mtDNA haplotype diversity in African and East Asian village dogs, potentially calling into question the hypothesis of an East Asian origin for dog domestication.

  20. Equatorial ionospheric disturbances over the East African sector during the 2015 St. Patrick's day storm

    NASA Astrophysics Data System (ADS)

    Olwendo, O. J.; Cesaroni, C.; Yamazaki, Y.; Cilliers, P.

    2017-10-01

    During solar cycle 24, the St. Patrick's Day storm on 17 March, 2015 was one of the most severe geomagnetic storms. Several research investigations have been done and are still ongoing about this storm since the dynamics of this storm differs on a global scale from one sector to another. This study examines the response of the equatorial ionosphere to the storm in the East African sector. Total electron content (TEC) data from ground stations are used to investigate the evolution of the Equatorial Ionization Anomaly (EIA) during the storm. The TEC observations show a reduced EIA during 18-20 March 2015, consistent with previous studies at other longitudes. Analyses of ground magnetometer data and the thermospheric composition data from the NASA/TIMED satellite reveal that the reduced EIA during the storm can arise from the combined effect of the disturbance dynamo and composition change.

  1. Istopically Defined Source Reservoirs of Primitive Magmas in the East African Rift.

    NASA Astrophysics Data System (ADS)

    Rooney, T. O.; Furman, T.; Hanan, B.

    2005-12-01

    Extension within the East African Rift is a function of the interaction between plume-driven uplift and far-field stresses associated with plate tectonic processes. Geochemical and isotopic investigation of primitive basalts from the Main Ethiopian Rift (MER) reveals systematic spatial variations in the contributions from distinct and identifiable source reservoirs that, in turn help identify the mechanisms by which along-axis rifting has progressed. The Sr-Nd-Pb isotopic characteristics of MER basalts can be described by a three-component mixing model involving the long-lived Afar plume, a depleted mantle component similar to the source region for Gulf of Aden MORB from east of 48° E and a reservoir that is likely lithospheric (sub-continental mantle lithosphere, magmatic underplate or lower crust). Quaternary basalts in the central MER exhibit a systematic decrease in plume influence southward from 9.5° N to 8° N, i.e., away from the modern surface expression of the Afar plume in Djibouti and Erta 'Ale. The composition of the Afar plume component is comparable to the "C" mantle reservoir. This southward decrease in plume influence is coupled with an increase in the influence of the lithospheric and depleted mantle components. Linear arrays observed within Pb-Pb isotopic space at each eruptive center require distinctive ratio of lithospheric + depleted mantle components mixing with variable amounts of the "C"-like plume component. This isotopic evidence suggests the depleted mantle and lithosphere mixed prior to the generation of the recent magmas. To the south, the Sr-Nd-Pb isotopic compositions of Turkana (Kenya) rift basalts record a mix of a similar "C"-like plume component and a fourth HIMU-like source component. Low 3He/4He values observed in the HIMU-dominated lavas from Turkana contrast with the higher ratios found in basalts associated with the "C"-like Afar plume. Further analysis of "C"-HIMU lavas at Turkana is required to fully constrain the He

  2. Zircon U-Pb Ages from an Ultra-High Temperature Metapelite, Rauer Group, East Antarctica: Implications for Overprints by Grenvillian and Pan-African Events

    USGS Publications Warehouse

    Wang, Yanbin; Tong, Laixi; Liu, Dunyi

    2007-01-01

    SHRIMP U-Pb dating of zircon from an ultra-high temperature (UHT, ~1000 °C) granulite-facies metapelite from the Rauer Group, Mather Peninsula, east Antarctica, has yielded evidence for two episodes of metamorphic zircon growth, at ~1.00 Ga and ~530 Ma, and two episodes of magmatism in the source region for the protolith sediment, at ~2.53 and ~2.65 Ga, were identified from the zircon cores. Successive zircon growth at ~1.00 Ga and ~530 Ma records a sequence of distinct, widely spaced high-temperature metamorphic and/or anatectic events related to Grenvillian and Pan-African orogenesis. This study presents the first robust geochronological evidence for the timing of UHT metamorphism of the Rauer Group, supporting arguments that the peak UHT metamorphic event occurred at ~1.00 Ga and was overprinted by a separate high-grade event at ~530 Ma. The new age data indicate that the UHT granulites of the Rauer Group experienced a complex, multi-stage tectonothermal history, which cannot simply be explained via a single Pan-African (~500 Ma) high-grade tectonic event. This is critical in understanding the role of the eastern Prydz Bay region during the assembly of the east Gondwana supercontinent, and the newly recognized inherited Archaean ages (~2.53 and ~2.65 Ga) suggest a close tectonic relationship between the Rauer Group and the adjacent Archaean of the Vestfold Hills

  3. A Geodetic Strain Rate Model for the East African Rift System.

    PubMed

    Stamps, D S; Saria, E; Kreemer, C

    2018-01-15

    Here we describe the new Sub-Saharan Africa Geodetic Strain Rate Model v.1.0 (SSA-GSRM v.1.0), which provides fundamental constraints on long-term tectonic deformation in the region and an improved seismic hazards assessment in Sub-Saharan Africa. Sub-Saharan Africa encompasses the East African Rift System, the active divergent plate boundary between the Nubian and Somalian plates, where strain is largely accommodated along the boundaries of three subplates. We develop an improved geodetic strain rate field for sub-Saharan Africa that incorporates 1) an expanded geodetic velocity field, 2) redefined regions of deforming zones guided by seismicity distribution, and 3) updated constraints on block rotations. SSA-GSRM v.1.0 spans longitudes 22° to 55.5° and latitudes -52° to 20° with 0.25° (longitude) by 0.2° (latitude) spacing. For plates/sub-plates, we assign rigid block rotations as constraints on the strain rate calculation that is determined by fitting bicubic Bessel splines to a new geodetic velocity solution for an interpolated velocity gradient tensor field. We derive strain rates, velocities, and vorticity rates from the velocity gradient tensor field. A comparison with the Global Geodetic Strain Rate model v2.1 reveals regions of previously unresolved spatial heterogeneities in geodetic strain rate distribution, which indicates zones of elevated seismic risk.

  4. Emerging East Africa Analysis Brief

    EIA Publications

    2013-01-01

    Although oil and natural gas exploration has been going on for decades in various East African countries, there has been limited success until recently. In the past there were doubts about the amount of recoverable resources in the region, along with regional and civil conflicts that presented challenges and risks to foreign companies.

  5. A methodology to track temporal dynamics and rainfall thresholds of landslide processes in the East African Rift

    NASA Astrophysics Data System (ADS)

    Monsieurs, Elise; Jacobs, Liesbet; Kervyn, François; Kirschbaum, Dalia; d'Oreye, Nicolas; Derauw, Dominique; Kervyn, Matthieu; Nobile, Adriano; Trefois, Philippe; Dewitte, Olivier

    2015-04-01

    The East African rift valley is a major tectonic feature that shapes Central Africa and defines linear-shaped lowlands between highland ranges due to the action of geologic faults associated to earthquakes and volcanism. The region of interest, covering the Virunga Volcanic Province in eastern DRC, western Rwanda and Burundi, and southwest Uganda, is threatened by a rare combination of several types of geohazards, while it is also one of the most densely populated region of Africa. These geohazards can globally be classified as seismic, volcanic and landslide hazards. Landslides, include a wide range of ground movements, such as rock falls, deep failure of slopes and shallow debris flows. Landslides are possibly the most important geohazard in terms of recurring impact on the populations, causing fatalities every year and resulting in structural and functional damage to infrastructure and private properties, as well as serious disruptions of the organization of societies. Many landslides are observed each year in the whole region, and their occurrence is clearly linked to complex topographic, lithologic and vegetation signatures coupled with heavy rainfall events, which is the main triggering factor. The source mechanisms underlying landslide triggering and dynamics in the region of interest are still poorly understood, even though in recent years, some progress has been made towards appropriate data collection. Taking into account difficulties of field accessibility, we present a methodology to study landslide processes by multi-scale and multi-sensor remote sensing data from very high to low resolution (Pléiades, TRMM, CosmoSkyMed, Sentinel). The research will address the evolution over time of such data combined with other earth observations (seismic ground based networks, catalogues, rain gauge networks, GPS surveying, field observations) to detect and study landslide occurrence, dynamics and evolution. This research aims to get insights into the rainfall

  6. Blood vitamins and trace elements in Northern-East African cheetahs (Acinonyx jubatus soemmeringii) in captivity in the Middle East.

    PubMed

    Beckmann, Katie M; O'Donovan, Declan; McKeown, Sean; Wernery, Ulli; Basu, Puja; Bailey, Tom A

    2013-09-01

    There are few published data regarding the endangered Northern-East African cheetah (Acinonyx jubatus soemmeringii), held in captivity in the Middle East and Europe. Studies have demonstrated a high incidence of disease in captive cheetahs, in which vitamin and trace element imbalances have often been implicated. Blood vitamin and trace element reference values in cheetahs merit further investigation. In this study, blood samples were opportunistically collected from apparently healthy A. j. soemmeringii from two collections (A and B) with successful breeding programs in the United Arab Emirates. The cheetahs were fed whole prey of mixed species (and, in Collection B, goat muscle and bone as well) dusted with vitamin and mineral supplements. Mean serum vitamin and trace element values (for cheetahs > 4 mo in age) were as follows: vitamin A (retinol), 2.20 microM/L (n = 27); vitamin B1, 0.0818 microM/L (n = 45); vitamin C, 28.6 microM/L (n=10); vitamin E (alpha-tocopherol), 35.6 microM/L (n = 27); copper (Cu), 12.53 microM/L (n = 27); selenium (Se), 3.10 microM/L (n = 27); and zinc (Zn), 10.87 microM/L (n = 27). Mean values of vitamin A, vitamin E, Cu, and Zn fell within ranges of published cheetah mean values, and mean Se was lower than range values for cheetahs presented in one previous study; blood vitamin B1 and vitamin C values of cheetahs have not previously been published. The values were taken to indicate that the cheetahs' nutritional status was adequate with regard to those nutrients analyzed. Serum vitamin E was particularly high in cheetahs fed fresh whole prey, and on this basis vitamin E supplementation of fresh whole prey appeared to have been unnecessary. There were differences (P < 0.05) between collections in serum vitamin B1, vitamin E, Cu, and 10 other hematologic and biochemical parameters. Nine hematologic and blood biochemical parameters differed among age categories.

  7. Population genomic analysis uncovers African and European admixture in Drosophila melanogaster populations from the south-eastern United States and Caribbean Islands.

    PubMed

    Kao, Joyce Y; Zubair, Asif; Salomon, Matthew P; Nuzhdin, Sergey V; Campo, Daniel

    2015-04-01

    Drosophila melanogaster is postulated to have colonized North America in the past several 100 years in two waves. Flies from Europe colonized the east coast United States while flies from Africa inhabited the Caribbean, which if true, make the south-east US and Caribbean Islands a secondary contact zone for African and European D. melanogaster. This scenario has been proposed based on phenotypes and limited genetic data. In our study, we have sequenced individual whole genomes of flies from populations in the south-east US and Caribbean Islands and examined these populations in conjunction with population sequences from the west coast US, Africa, and Europe. We find that west coast US populations are closely related to the European population, likely reflecting a rapid westward expansion upon first settlements into North America. We also find genomic evidence of African and European admixture in south-east US and Caribbean populations, with a clinal pattern of decreasing proportions of African ancestry with higher latitude. Our genomic analysis of D. melanogaster populations from the south-east US and Caribbean Islands provides more evidence for the Caribbean Islands as the source of previously reported novel African alleles found in other east coast US populations. We also find the border between the south-east US and the Caribbean island to be the admixture hot zone where distinctly African-like Caribbean flies become genomically more similar to European-like south-east US flies. Our findings have important implications for previous studies examining the generation of east coast US clines via selection. © 2015 John Wiley & Sons Ltd.

  8. Shaded Relief with Height as Color, Virunga and Nyiragongo Volcanoes and the East African Rift

    NASA Technical Reports Server (NTRS)

    2002-01-01

    Volcanic, tectonic, erosional and sedimentary landforms are all evident in this comparison of two elevation models of a region along the East African Rift at Lake Kivu. The area shown covers parts of Congo, Rwanda and Uganda.

    These two images show exactly the same area. The image on the left was created using the best global topographic data set previously available, the U.S. Geological Survey's GTOPO30. In contrast, the much more detailed image on the right was generated with data from the Shuttle Radar Topography Mission, which collected enough measurements to map 80 percent of Earth's landmass at this level of precision. Elevation is color coded, progressing from green at the lower elevations through yellow to brown at the higher elevations. A false sun in the northwest (upper left) creates topographic shading.

    Lake Kivu is shown as black in the Shuttle Radar Topography Mission version (southwest corner). It lies within the East African Rift, an elongated tectonic pull-apart depression in Earth's crust. The rift extends to the northeast as a smooth lava- and sediment-filled trough. Two volcanic complexes are seen in the rift. The one closer to the lake is the Nyiragongo volcano, which erupted in January 2002, sending lava toward the lake shore and through the city of Goma. East of the rift, even more volcanoes are seen. These are the Virunga volcano chain, which is the home of the endangered mountain gorillas. Note that the terrain surrounding the volcanoes is much smoother than the eroding mountains that cover most of this view, such that topography alone is a good indicator of the extent of the lava flows. But this clear only at the higher spatial resolution of the shuttle mission's data set.

    For some parts of the globe, Shuttle Radar Topography Mission measurements are 30 times more precise than previously available topographical information, according to NASA scientists. Mission data will be a welcome resource for national and local governments

  9. The influence of inherited structures on magmatic and amagmatic processes in the East African Rift.

    NASA Astrophysics Data System (ADS)

    Biggs, J.; Lloyd, R.; Hodge, M.; Robertson, E.; Wilks, M.; Fagereng, A.; Kendall, J. M.; Mdala, H. S.; Lewi, E.; Ayele, A.

    2017-12-01

    The idea that crustal heterogeneities, particularly inherited structures, influence the initiation and evolution of continental rifts is not new, but now modern techniques allow us to explore these controls from a fresh perspective, over a range of lengthscales, timescales and depths. In amagmatic rifts, I will demonstrate that deep fault structure is controlled by the stress orientation during the earliest phase of rifting, while the surface expression exploits near-surface weaknesses. I will show that pre-existing structures control the storage and orientation of deeper magma reservoirs in magmatic rifts, while the tectonic stress regime controls intra-rift faulting and shallow magmatism and stresses related to surface loading and cycles of inflation and deflation dominate at volcanic edifices. Finally, I will show how cross-rift structures influence short-term processes such as deformation and seismicity. I will illustrate the talk throughout using examples from along the East African Rift, including Malawi, Tanzania, Kenya and Ethiopia.

  10. 78,000-year-old record of Middle and Later stone age innovation in an East African tropical forest.

    PubMed

    Shipton, Ceri; Roberts, Patrick; Archer, Will; Armitage, Simon J; Bita, Caesar; Blinkhorn, James; Courtney-Mustaphi, Colin; Crowther, Alison; Curtis, Richard; Errico, Francesco d'; Douka, Katerina; Faulkner, Patrick; Groucutt, Huw S; Helm, Richard; Herries, Andy I R; Jembe, Severinus; Kourampas, Nikos; Lee-Thorp, Julia; Marchant, Rob; Mercader, Julio; Marti, Africa Pitarch; Prendergast, Mary E; Rowson, Ben; Tengeza, Amini; Tibesasa, Ruth; White, Tom S; Petraglia, Michael D; Boivin, Nicole

    2018-05-09

    The Middle to Later Stone Age transition in Africa has been debated as a significant shift in human technological, cultural, and cognitive evolution. However, the majority of research on this transition is currently focused on southern Africa due to a lack of long-term, stratified sites across much of the African continent. Here, we report a 78,000-year-long archeological record from Panga ya Saidi, a cave in the humid coastal forest of Kenya. Following a shift in toolkits ~67,000 years ago, novel symbolic and technological behaviors assemble in a non-unilinear manner. Against a backdrop of a persistent tropical forest-grassland ecotone, localized innovations better characterize the Late Pleistocene of this part of East Africa than alternative emphases on dramatic revolutions or migrations.

  11. Immune-Related Functions of the Hivep Gene Family in East African Cichlid Fishes

    PubMed Central

    Diepeveen, Eveline T.; Roth, Olivia; Salzburger, Walter

    2013-01-01

    Immune-related genes are often characterized by adaptive protein evolution. Selection on immune genes can be particularly strong when hosts encounter novel parasites, for instance, after the colonization of a new habitat or upon the exploitation of vacant ecological niches in an adaptive radiation. We examined a set of new candidate immune genes in East African cichlid fishes. More specifically, we studied the signatures of selection in five paralogs of the human immunodeficiency virus type I enhancer-binding protein (Hivep) gene family, tested their involvement in the immune defense, and related our results to explosive speciation and adaptive radiation events in cichlids. We found signatures of long-term positive selection in four Hivep paralogs and lineage-specific positive selection in Hivep3b in two radiating cichlid lineages. Exposure of the cichlid Astatotilapia burtoni to a vaccination with Vibrio anguillarum bacteria resulted in a positive correlation between immune response parameters and expression levels of three Hivep loci. This work provides the first evidence for a role of Hivep paralogs in teleost immune defense and links the signatures of positive selection to host–pathogen interactions within an adaptive radiation. PMID:24142922

  12. Mantle Structure Beneath East Africa and Zambia from Body Wave Tomography

    NASA Astrophysics Data System (ADS)

    Mulibo, G.; Nyblade, A.; Tugume, F.

    2011-12-01

    In this study, P and S travel time residuals from teleseismic earthquakes recorded on over 60 temporary AfricaArray seismic stations deployed in Uganda, Kenya, Tanzania and Zambia between 2007 and 2011 are being inverted, together with travel time residuals from previous deployments, for a 3D image of mantle wave speeds variations extending to a depth of 1200 km. Preliminary results show that at depths of 200 km of less, low wave speed anomalies are well developed beneath the Eastern and Western Branches of the East African Rift System. At deep depths, the low wave speed anomalies focus under the center and southern part of the East African Plateau and extend into the transition zone. At transition zone depths and within the top part of the lower mantle, the low wave speed anomaly shifts to the southwest beneath Zambia, indicating that the low wave speed anomaly is continuous across the transition zone and that it extends into the lower mantle. This result suggests that the upper mantle low wave speed anomaly beneath East Africa is connected to the African superplume anomaly in the lower mantle beneath southern Africa.

  13. Malaria in East African highlands during the past 30 years: impact of environmental changes

    PubMed Central

    Himeidan, Yousif E.; Kweka, Eliningaya J.

    2012-01-01

    East African highlands are one of the most populated regions in Africa. The population densities in the highlands ranged between 158 persons/km2 in Ethiopia and 410 persons/km2 in Rwanda. According to the United Nations Population Fund, the region has the world's highest population growth rate. These factors are likely behind the high rates of poverty among the populations. As there were no employment opportunities other than agricultural, this demographic pressure of poor populations have included in an extensive unprecedented land use and land cover changes such as modification of bushland, woodland, and grassland on hillsides to farmland and transformation of papyrus swamps in valley bottoms to dairy pastures and cropland and changing of fallows on hillsides from short or seasonal to longer or perennial. Areas harvested for food crops were therefore increased by more than 100% in most of the highlands. The lost of forest areas, mainly due to subsistence agriculture, between 1990 and 2010 ranged between 8000 ha in Rwanda and 2,838,000 ha in Ethiopia. These unmitigated environmental changes in the highlands led to rise temperature and optimizing the spread and survival of malaria vectors and development of malaria parasites. Malaria in highlands was initially governed by low ambient temperature, trend of malaria transmission was therefore increased and several epidemics were observed in late 1980s and early 2000s. Although, malaria is decreasing through intensified interventions since mid 2000s onwards, these environmental changes might expose population in the highlands of east Africa to an increase risk of malaria and its epidemic particularly if the current interventions are not sustained. PMID:22934065

  14. Using lead isotopes and trace element records from two contrasting Lake Tanganyika sediment cores to assess watershed – Lake exchange

    USGS Publications Warehouse

    Odigie, Kingsley; Cohen, A.D.; Swarzenski, Peter W.; Flegal, R

    2014-01-01

    Lead isotopic and trace element records of two contrasting sediment cores were examined to reconstruct historic, industrial contaminant inputs to Lake Tanganyika, Africa. Observed fluxes of Co, Cu, Mn, Ni, Pb, and Zn in age-dated sediments collected from the lake varied both spatially and temporally over the past two to four centuries. The fluxes of trace elements were lower (up to 10-fold) at a mid-lake site (MC1) than at a nearshore site (LT-98-58), which is directly downstream from the Kahama and Nyasanga River watersheds and adjacent to the relatively pristine Gombe Stream National Park. Trace element fluxes at that nearshore site did not measurably change over the last two centuries (1815–1998), while the distal, mid-lake site exhibited substantial changes in the fluxes of trace elements – likely caused by changes in land use – over that period. For example, the flux of Pb increased by ∼300% from 1871 to 1991. That apparent accelerated weathering and detrital mobilization of lithogenic trace elements was further evidenced by (i) positive correlations (r = 0.77–0.99, p < 0.05) between the fluxes of Co, Cu, Mn, Ni, Pb, and Zn and those of iron (Fe) at both sites, (ii) positive correlations (r = 0.82–0.98, p < 0.01, n = 9) between the fluxes of elements (Al, Co, Cu, Fe, Mn, Ni, Pb, and Zn) and the mass accumulation rates at the offshore site, (iii) the low enrichment factors (EF < 5) of those trace elements, and (iv) the temporal consistencies of the isotopic composition of Pb in the sediment. These measurements indicate that accelerated weathering, rather than industrialization, accounts for most of the increases in trace element fluxes to Lake Tanganyika in spite of the development of mining and smelting operations within the lake’s watershed over the past century. The data also indicate that the mid-lake site is a much more sensitive and useful recorder of environmental changes than the nearshore site. Furthermore, the lead isotopic compositions

  15. Andreas Goes to Africa: A Comparative Historical Study of the Teachers for East Africa Programs

    ERIC Educational Resources Information Center

    Vavrus, Frances

    2018-01-01

    This article uses a comparative historical approach to examine the Teachers for East Africa (TEA) and the Teacher Education in East Africa (TEEA) programs, an influential educational development effort that involved U.S. and British college graduates in East African schools and colleges during the decade of 1961-1971. Drawing on postcolonial…

  16. Constraining the Composition of the Subcontinental Lithospheric Mantle Beneath the East African Rift: FTIR Analysis of Water in Spinel Peridotite Mantle Xenoliths

    NASA Astrophysics Data System (ADS)

    Erickson, S. G.; Nelson, W. R.; Peslier, A. H.; Snow, J. E.

    2014-12-01

    The East African Rift System was initiated by the impingement of the Afar mantle plume on the base of the non-cratonic continental lithosphere (assembled during the Pan-African Orogeny), producing over 300,000 km3 [1] of continental flood basalts ~30 Ma ago. The contribution of the subcontinental lithospheric mantle (SCLM) to this voluminous period of volcanism is implied based on basaltic geochemical and isotopic data. However, the role of percolating melts on the SCLM composition is less clear. Metasomatism is capable of hybridizing or overprinting the geochemical signature of the SCLM. In addition, models suggest that adding fluids to lithospheric mantle affects its stability [e.g. 2, 3]. We investigated the nature of the SCLM using Fourier transform infrared spectrometry (FTIR) to measure water content in mantle xenoliths entrained in young (1 Ma) basaltic lavas from the Ethiopian volcanic province. The mantle xenoliths consist dominantly of spinel lherzolites and are composed of nominally anhydrous minerals, which can contain trace water as H in mineral defects. Eleven mantle xenoliths come from the Injibara-Gojam region and two from the Mega-Sidamo region. Water abundances of olivines in six samples are 1-5ppm H2O while the rest are below the limit of detection (<0.5 ppm H2O); orthopyroxene and clinopyroxene contain 80-238 and 111-340 ppm wt H2O, respectively. Two xenoliths have higher water contents - a websterite (470 ppm) and dunite (229 ppm), consistent with involvement of ascending melts. The low water content of the upper SCLM beneath Ethiopia is as dry as the oceanic mantle [2] except for small domains represented by percolating melts. Consequently, rifting of the East African lithosphere may not have been facilitated by a hydrated upper mantle. [1] Hoffman et al., 1997 Nature 389, 838-841. [2] Peslier et al., 2010 Nature 467, 78-81. [3] Lee et al., 2011 AREPS 39, 59-90.

  17. Mhc class II B gene evolution in East African cichlid fishes.

    PubMed

    Figueroa, F; Mayer, W E; Sültmann, H; O'hUigin, C; Tichy, H; Satta, Y; Takezaki, N; Takahata, N; Klein, J

    2000-06-01

    A distinctive feature of essential major histocompatibility complex (Mhc) loci is their polymorphism characterized by large genetic distances between alleles and long persistence times of allelic lineages. Since the lineages often span several successive speciations, we investigated the behavior of the Mhc alleles during or close to the speciation phase. We sequenced exon 2 of the class II B locus 4 from 232 East African cichlid fishes representing 32 related species. The divergence times of the (sub)species ranged from 6,000 to 8.4 million years. Two types of evolutionary analysis were used to elucidate the pattern of exon 2 sequence divergence. First, phylogenetic methods were applied to reconstruct the most likely evolutionary pathways leading from the last common ancestor of the set to the extant sequences, and to assess the probable mechanisms involved in allelic diversification. Second, pairwise comparisons of sequences were carried out to detect differences seemingly incompatible with origin by nonparallel point mutations. The analysis revealed point mutations to be the most important mechanism behind allelic divergences, with recombination playing only an auxiliary part. Comparison of sequences from related species revealed evidence of random allelic (lineage) losses apparently associated with speciation. Sharing of identical alleles could be demonstrated between species that diverged 2 million years ago. The phylogeny of the exon was incongruent with that of the flanking introns, indicating either a high degree of convergent evolution at the peptide-binding region-encoding sites, or intron homogenization.

  18. Incidence and nature of human tuberculosis due to Mycobacterium africanum in South-East England: 1977-87.

    PubMed

    Grange, J M; Yates, M D

    1989-08-01

    A total of 210 new cases of tuberculosis due to Mycobacterium africanum were registered at the South-East Regional Centre for Tuberculosis Bacteriology, Dulwich, between 1977 and 1987 inclusive. This represented 1.25% of bacteriologically-confirmed cases of tuberculosis in South-East England, an incidence slightly higher than that of disease due to M. bovis. Two variants were identified: 150 strains were typed as African I (a type associated with East Africa) and 60 as African II (a type more prevalent in West Africa). Over half the patients infected with African I strains were of Indian subcontinent ethnic origin; patients of African ethnic origin predominated in the African II group while about a fifth o patients infected with either type were of European origin. The European patients with tuberculosis due to M. africanum were notably younger than those in the same region with disease due to other tubercle bacilli. The distribution of lesions due to M. africanum was similar to that due to other tubercle bacilli in the various ethnic groups, except that genito-urinary tuberculosis was uncommon. The importance of a clinical awareness that M. africanum is a highly pathogenic and transmissible tubercle bacillus rather than an opportunist or 'atypical' mycobacterium is stressed.

  19. Characterization of Ionospheric Dynamics Over The East African Dip Equatorial Region Using GPS-Derived Total Electron Content.

    NASA Astrophysics Data System (ADS)

    Olwendo, J. O.

    2016-12-01

    Through a linear combination of GPS satellite range and phase measurement observed on two carrier frequencies by terrestrial based GPS receivers, the ionospheric total electron content (TEC) along oblique GPS signal path can be quantified. Using Adjusted Spherical Harmonic (ASHA) expansion, regional TEC maps over the East Africa sector has been achieved. The observed TEC has been used to evaluate the performance of IRI2007 and NeQuick 2 models over the region. Ionospheric irregularities have been measured and the plasma drift velocity and the East-West extent of the irregularities have also been analyzed by using a Very High Frequency (VHF) receiver system that is closely spaced. The hourly TEC images developed have shown that the Southern Equatorial Ionization Anomaly (EIA) crest over the East African sector lies within the Kenyan region, and the occurrence of scintillation is dependent on how well the anomaly crest forms. Scintillation occurrences are intense at and around the edges of EIA crest due to the presence of high ambient electron densities and sharp TEC depletions. Simultaneous recording of amplitude scintillations at VHF and L-band frequencies reveal two distinct types of scintillation namely; the Plasma Bubble Induced (PBI) and the Bottom Side Sinusoidal (BSS). The PBI scintillations are characterized by high intensity during the post-sunset hours of the equinoctial months and appear at both VHF and L-band frequencies. The BSS type are associated with VHF scintillation and are characterized by long duration patches and often exhibit Fresnel oscillation on the roll portion of the power spectrum, which suggest a weak scattering from thin screen irregularities. The occurrence of post-midnight L-band scintillation events which are not linked to pre-midnight scintillation observations raises fundamental question on the mechanism and source of electric fields driving the plasma depletion under conditions of very low background electron density.

  20. Vitamin D intake, serum 25-hydroxyvitamin D status and response to moderate vitamin D3 supplementation: a randomised controlled trial in East African and Finnish women.

    PubMed

    Adebayo, Folasade A; Itkonen, Suvi T; Öhman, Taina; Skaffari, Essi; Saarnio, Elisa M; Erkkola, Maijaliisa; Cashman, Kevin D; Lamberg-Allardt, Christel

    2018-02-01

    Insufficient vitamin D status (serum 25-hydroxyvitamin D (S-25(OH)D)0·05 for differences between ethnic groups). In conclusion, high prevalence of vitamin D insufficiency existed among East African women living in Finland, despite higher vitamin D intake than their Finnish peers. Moderate vitamin D3 supplementation was effective in increasing S-25(OH)D in both groups of women, and no ethnic differences existed in the response to supplementation.

  1. Practical Challenges and Perspectives for the Development of Neurosurgery in a Peripheral East African Hospital During a One-Volunteer Midterm Mission.

    PubMed

    Spanu, Fabio; Piquer, José; Panciani, P Paolo; Qureshi, Mahmood M

    2018-03-01

    Several strategies have been proposed for developing and spreading surgical specialties in Sub-Saharan East Africa. Regarding neurosurgery, improvements are coming from the cooperation between Western and African institutes by means of the World Federation of Neurological Surgeons and independent organizations but, far from big cities and more equipped hospitals, shortcomings in the delivery of services persist. Through the application of 1 formally trained neurosurgeon volunteer, the Foundation for International Education in Neurological Surgery and Neurocirugía, Educación y Desarrollo coordinated a 2-month neurosurgical project at Mathari Consolata Hospital in Nyeri (Kenya), designed to analyze critical points and to find suggestions for initiating and developing a neurosurgical service, providing in the meantime clinical and surgical care for patients. During the mission, general and local issues limiting the neurosurgical activities at the hospital were studied. They were discussed with the hospital board and the project supervisors, thereby ensuring short-term and medium-term solutions and possible future cooperation with the hospital. The volunteer also carried out clinics and surgery for neuro cases and neurosurgical training for nurses and doctors. The model proposed should be considered a preliminary and immersive survey to evaluate the eligibility of a decentralized East African hospital to interface with neurosurgical activities, through the support of experienced local institutes and Western organizations. Host hospitals would also have the chance to enhance clinical services currently lacking and to train its personnel at low cost. The program may represent a rewarding personal and professional opportunity for young trained neurosurgeons, which also addresses the contemporary shortage of local specialists. Copyright © 2017 Elsevier Inc. All rights reserved.

  2. Cassava whitefly, Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) in East African farming landscapes: a review of the factors determining abundance.

    PubMed

    Macfadyen, S; Paull, C; Boykin, L M; De Barro, P; Maruthi, M N; Otim, M; Kalyebi, A; Vassão, D G; Sseruwagi, P; Tay, W T; Delatte, H; Seguni, Z; Colvin, J; Omongo, C A

    2018-02-13

    Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) is a pest species complex that causes widespread damage to cassava, a staple food crop for millions of households in East Africa. Species in the complex cause direct feeding damage to cassava and are the vectors of multiple plant viruses. Whilst significant work has gone into developing virus-resistant cassava cultivars, there has been little research effort aimed at understanding the ecology of these insect vectors. Here we assess critically the knowledge base relating to factors that may lead to high population densities of sub-Saharan African (SSA) B. tabaci species in cassava production landscapes of East Africa. We focus first on empirical studies that have examined biotic or abiotic factors that may lead to high populations. We then identify knowledge gaps that need to be filled to deliver sustainable management solutions. We found that whilst many hypotheses have been put forward to explain the increases in abundance witnessed since the early 1990s, there are little published data and these tend to have been collected in a piecemeal manner. The most critical knowledge gaps identified were: (i) understanding how cassava cultivars and alternative host plants impact population dynamics and natural enemies; (ii) the impact of natural enemies in terms of reducing the frequency of outbreaks and (iii) the use and management of insecticides to delay the development of resistance. In addition, there are several fundamental methodologies that need to be developed and deployed in East Africa to address some of the more challenging knowledge gaps.

  3. Late Pan-African and early Mesozoic brittle compressions in East and Central Africa: lithospheric deformation within the Congo-Tanzania Cratonic area

    NASA Astrophysics Data System (ADS)

    Delvaux, D.; Kipata, M. L.; Macheyeki, A. S.

    2012-04-01

    Tectonic reconstructions leading to the formation of the Central-African part of Gondwana have so far not much taken into account constraints provided by the evolution of brittle structures and related stress field. This is largely because little is known on continental brittle deformation in Equatorial Africa before the onset of the Mesozoic Central-African and Late Cenozoic East-African rifts. We present a synthesis of fault-kinematic data and paleostress inversion results from field surveys covering parts of Tanzania, Zambia and the Democratic Republic of Congo. It is based on investigations along the eastern margin of the Tanzanian craton, in the Ubendian belt between the Tanzanian craton and Bangweulu block, in the Lufilian Arc between the Kalahari and Congo cratons and along the Congo intracratonic basin. Paleostress tensors were computed for a substantial database by interactive stress tensor inversion and data subset separation, and the relative succession of major brittle events established. Two of them appear to be of regional importance and could be traced from one region to the other. The oldest one is the first brittle event recorded after the paroxysm of the Terminal Pan-African event that led to the amalgamation Gondwana at the Precambrian-Cambrian transition. It is related to compressional deformation with horizontal stress trajectories fluctuating from an E-W compression in Central Tanzania to NE-SW in the Ubende belt and Lufilian Arc. The second event is a transpressional inversion with a consistent NW-SE compression that we relate to the far-field effects of the active margin south of Gondwana during the late Triassic - early Jurassic.

  4. "For Poor Nations a Library Service Is Vital": Establishing a National Public Library Service in Tanzania in the 1960s

    ERIC Educational Resources Information Center

    Olden, Anthony

    2005-01-01

    The Tanganyika Library Service (TLS) was the national public library service set up in Tanzania, East Africa, in the 1960s. By the end of the decade, it was generally regarded as a model of Western-style public library development in Africa. This is an account of its establishment and early years based on accessible documentary sources in Tanzania…

  5. Genomic Ancestry of North Africans Supports Back-to-Africa Migrations

    PubMed Central

    Gravel, Simon; Wang, Wei; Brisbin, Abra; Byrnes, Jake K.; Fadhlaoui-Zid, Karima; Zalloua, Pierre A.; Moreno-Estrada, Andres; Bertranpetit, Jaume; Bustamante, Carlos D.; Comas, David

    2012-01-01

    North African populations are distinct from sub-Saharan Africans based on cultural, linguistic, and phenotypic attributes; however, the time and the extent of genetic divergence between populations north and south of the Sahara remain poorly understood. Here, we interrogate the multilayered history of North Africa by characterizing the effect of hypothesized migrations from the Near East, Europe, and sub-Saharan Africa on current genetic diversity. We present dense, genome-wide SNP genotyping array data (730,000 sites) from seven North African populations, spanning from Egypt to Morocco, and one Spanish population. We identify a gradient of likely autochthonous Maghrebi ancestry that increases from east to west across northern Africa; this ancestry is likely derived from “back-to-Africa” gene flow more than 12,000 years ago (ya), prior to the Holocene. The indigenous North African ancestry is more frequent in populations with historical Berber ethnicity. In most North African populations we also see substantial shared ancestry with the Near East, and to a lesser extent sub-Saharan Africa and Europe. To estimate the time of migration from sub-Saharan populations into North Africa, we implement a maximum likelihood dating method based on the distribution of migrant tracts. In order to first identify migrant tracts, we assign local ancestry to haplotypes using a novel, principal component-based analysis of three ancestral populations. We estimate that a migration of western African origin into Morocco began about 40 generations ago (approximately 1,200 ya); a migration of individuals with Nilotic ancestry into Egypt occurred about 25 generations ago (approximately 750 ya). Our genomic data reveal an extraordinarily complex history of migrations, involving at least five ancestral populations, into North Africa. PMID:22253600

  6. African human mtDNA phylogeography at-a-glance.

    PubMed

    Rosa, Alexandra; Brehem, António

    2011-01-01

    The mitochondrial DNA (mtDNA) genetic system has long proven to be useful for studying the demographic history of our species, since their proposed Southeast/East African origin 200 kya. Despite the weak archaeological and anthropologic records, which render a difficult understanding of early intra- continental migrations, the phylogenetic L0-L1'6 split at about 140-160 kya is thought to represent also an early sub-structuring of small and isolated communities in South and East Africa. Regional variation accumulated over the following millennia, with L2 and L3 lineages arising in Central and East Africa 100-75 kya. Their sub-Saharan dispersal not later than 60 kya, largely overwhelmed the L0'1 distribution, nowadays limited to South African Khoisan and Central African Pygmies. Cyclic expansions and retractions of the equatorial forest between 40 kya and the "Last Glacial Aridity Maximum" were able to reduce the genetic diversity of modern humans. Surviving regional-specific lineages have emerged from the Sahelian refuge areas, repopulating the region and contributing to the overall West African genetic similarity. Particular L1- L3 lineages mirror the substantial population growth made possible by moister and warmer conditions of the Sahara's Wet Phase and the adoption of agriculture and iron smelting techniques. The diffusion of the farming expertise from a Central African source towards South Africa was mediated by the Bantu people 3 kya. The strong impact of their gene flow almost erased the pre-existent maternal pool. Non-L mtDNAs testify for Eurasian lineages that have enriched the African maternal pool at different timeframes: i) Near and Middle Eastern influences in Upper Palaeolithic, probably link to the spread of Afro-Asiatic languages; ii) particular lineages from West Eurasia around or after the glacial period; iii) post-glacial mtDNA signatures from the Franco-Cantabrian refugia, that have crossed the Strait of Gibraltar and iv) Eurasian lineages

  7. Predicting East African spring droughts using Pacific and Indian Ocean sea surface temperature indices

    NASA Astrophysics Data System (ADS)

    Funk, C.; Hoell, A.; Shukla, S.; Bladé, I.; Liebmann, B.; Roberts, J. B.; Robertson, F. R.; Husak, G.

    2014-03-01

    In southern Ethiopia, Eastern Kenya, and southern Somalia, poor boreal spring rains in 1999, 2000, 2004, 2007, 2008, 2009, and 2011 contributed to severe food insecurity and high levels of malnutrition. Predicting rainfall deficits in this region on seasonal and decadal time frames can help decision makers implement disaster risk reduction measures while guiding climate-smart adaptation and agricultural development. Building on recent research that links more frequent droughts in that region to a stronger Walker Circulation, warming in the Indo-Pacific warm pool, and an increased western Pacific sea surface temperature (SST) gradient, we show that the two dominant modes of East African boreal spring rainfall variability are tied, respectively, to western-central Pacific and central Indian Ocean SST. Variations in these rainfall modes can be predicted using two previously defined SST indices - the West Pacific Gradient (WPG) and Central Indian Ocean index (CIO), with the WPG and CIO being used, respectively, to predict the first and second rainfall modes. These simple indices can be used in concert with more sophisticated coupled modeling systems and land surface data assimilations to help inform early warning and guide climate outlooks.

  8. Forecasting The Onset Of The East African Rains

    NASA Astrophysics Data System (ADS)

    MacLeod, D.; Palmer, T.

    2017-12-01

    The timing of the rainy seasons is critical for East Africa, where many livelihoods depend on rain-fed agriculture. The exact onset date of the rains varies from year to year and a delayed start has significant implications for food security. Early warning of anomalous onset can help mitigate risks by informing farmer decisions on crop choice and timing of planting. Onset forecasts may also pre-warn governments and NGOs of upcoming need for financial support and humanitarian intervention. Here we assess the potential to forecast the onset of both the short and long rains over East Africa at subseasonal to seasonal timescales. Based on operational reforecasts from ECMWF, we will demonstrate skilful prediction of onset anomalies. An investigation to determine potential sources of this forecast skill will also be presented. This work has been carried out as part of the project ForPAc: "Towards forecast-based preparedness action".

  9. Development of catchment research, with particular attention to Plynlimon and its forerunner, the East African catchments

    NASA Astrophysics Data System (ADS)

    Blackie, J. R.; Robinson, M.

    2007-01-01

    Dr J.S.G. McCulloch was deeply involved in the establishment of research catchments in East Africa and subsequently in the UK to investigate the hydrological consequences of changes in land use. Comparison of these studies provides an insight into how influential his inputs and direction have been in the progressive development of the philosophy, the instrumentation and the analytical techniques now employed in catchment research. There were great contrasts in the environments: tropical highland (high radiation, intense rainfall) vs. temperate maritime (low radiation and frontal storms), contrasting soils and vegetation types, as well as the differing social and economic pressures in developing and developed nations. Nevertheless, the underlying scientific philosophy was common to both, although techniques had to be modified according to local conditions. As specialised instrumentation and analytical techniques were developed for the UK catchments many were also integrated into the East African studies. Many lessons were learned in the course of these studies and from the experiences of other studies around the world. Overall, a rigorous scientific approach was developed with widespread applicability. Beyond the basics of catchment selection and the quantification of the main components of the catchment water balance, this involved initiating parallel process studies to provide information on specific aspects of catchment behaviour. This information could then form the basis for models capable of extrapolation from the observed time series to other periods/hydrological events and, ultimately, the capability of predicting the consequences of changes in catchment land management to other areas in a range of climates.

  10. Late Cenozoic history of North African climate and vegetation: Orbital and secular changes revealed by leaf-wax biomarkers at multiple ODP sites

    NASA Astrophysics Data System (ADS)

    Meyers, C.; deMenocal, P. B.; Polissar, P. J.; Tierney, J. E.

    2013-12-01

    East Africa experienced a large shift towards increasingly arid conditions and expanded C4 grasslands after about 2 Ma, as indicated by multiple terrestrial and marine paleoclimatic and paleontological records. We investigated whether the East African shift towards C4 grasslands was associated with a change in the west African monsoonal response to orbital precession forcing. We analyzed eastern Mediterranean sedimentary leaf wax stable isotopes (δDwax and δ13Cwax) and planktonic foraminifera δ18O from ODP Site 967 at 2.5 kyr resolution from 3.0 - 3.1 Ma and 1.78 - 1.68 Ma, intervals with equal eccentricity forcing that bracket the rise in East African C4 grasslands. Large-amplitude negative excursions occur in δDwax, δ13Cwax, and δ18Oruber during sapropel intervals, consistent with our expectations that these proxies track increased monsoonal rainfall and runoff and more abundant C3 vegetation during wet North African periods. Nannofossil ooze sediments exhibit large positive isotopic excursions, consistent with drier North African conditions. However, average isotopic values are not significantly different for either δDwax or δ13Cwax from 3.0 Ma to 1.7 Ma, suggesting that west African monsoonal precipitation strength and vegetation were similar in North Africa during the East African C4 vegetation expansion. Our calculations of δDwater yield estimates similar to modern precipitation in northeast Africa, and δ13Cwax data indicate that vegetation varied between 70-90% C4 types during both periods. These results suggest that Site 967 primarily records northeast African climate and vegetation, and that East Africa's aridity and C4 vegetation expansion were a regional signal not experienced by northeast Africa. We will place both northeast Africa and East African changes in a long-term context with preliminary results from the last 25 Myr of NW African margin leaf wax δD. Analysis of samples from ODP Sites 659 (18°N, 21°W; W. Saharan margin) and 959 (4

  11. Geochemical Overview of the East African Rift System

    NASA Astrophysics Data System (ADS)

    Furman, T.

    2003-12-01

    Mafic volcanics of the East African Rift System (EARS) record a protracted history of continental extension that is linked to mantle plume activity. The modern EARS traverses two post-Miocene topographic domes separated by a region of polyphase extension in northern Kenya and southern Ethiopia. Basaltic magmatism commenced ˜45 Ma in this highly extended region, while the onset of plume-related activity took place ˜30 Ma with eruption of flood basalts in central Ethiopia. A spatial and temporal synthesis of EARS volcanic geochemistry shows progressive lithospheric removal (by erosion and melting) as the degree of rifting increases, with basalts in the most highly extended areas recording melting of depleted asthenosphere. Plume contributions are indicated locally in the northern half of the EARS, but are absent from the southern half. The geochemical signatures are compatible with a physical model in which the entire EARS is fed by a discontinuous plume emanating from the core-mantle boundary as the South African Superswell. Quaternary basaltic lavas erupted in the Afar triangle, Red Sea and Gulf of Aden define the geochemical signature attributed to the Afar plume (87Sr/86Sr 0.7034-0.7037, 143Nd/144Nd 0.5129-0.5130; La/Nb 0.6-0.9; Nb/U 40-50). These suites commonly record mixing with ambient upper mantle having less radiogenic isotopes but generally overlapping incompatible trace element abundances. Within the Ethiopian dome both lithospheric and sub-lithoshperic contributions can be documented clearly; lithospheric contributions are manifest in more radiogenic isotope values (87Sr/86Sr up to 0.7050) and distinctive trace element abundances (e.g., La/Nb <2.0, Nb/U > 10). The degree of lithospheric contribution is lowest within the active Main Ethiopian Rift and increases towards the southern margin of the dome. The estimated depth of melting (65-75 km) is consistent with geophysical observations of lithospheric thickness. In regions of prolonged volcanism the

  12. Tomography of the East African Rift System in Mozambique

    NASA Astrophysics Data System (ADS)

    Domingues, A.; Silveira, G. M.; Custodio, S.; Chamussa, J.; Lebedev, S.; Chang, S. J.; Ferreira, A. M. G.; Fonseca, J. F. B. D.

    2014-12-01

    Unlike the majority of the East African Rift, the Mozambique region has not been deeply studied, not only due to political instabilities but also because of the difficult access to its most interior regions. An earthquake with M7 occurred in Machaze in 2006, which triggered the investigation of this particular region. The MOZART project (funded by FCT, Lisbon) installed a temporary seismic network, with a total of 30 broadband stations from the SEIS-UK pool, from April 2011 to July 2013. Preliminary locations of the seismicity were estimated with the data recorded from April 2011 to July 2012. A total of 307 earthquakes were located, with ML magnitudes ranging from 0.9 to 3.9. We observe a linear northeast-southwest distribution of the seismicity that seems associated to the Inhaminga fault. The seismicity has an extension of ~300km reaching the Machaze earthquake area. The northeast sector of the seismicity shows a good correlation with the topography, tracing the Urema rift valley. In order to obtain an initial velocity model of the region, the ambient noise method is used. This method is applied to the entire data set available and two additional stations of the AfricaARRAY project. Ambient noise surface wave tomography is possible by computing cross-correlations between all pairs of stations and measuring the group velocities for all interstation paths. With this approach we obtain Rayleigh wave group velocity dispersion curves in the period range from 3 to 50 seconds. Group velocity maps are calculated for several periods and allowing a geological and tectonic interpretation. In order to extend the investigation to longer wave periods and thus probe both the crust and upper mantle, we apply a recent implementation of the surface-wave two-station method (teleseismic interferometry - Meier el al 2004) to augment our dataset with Rayleigh wave phase velocities curves in a broad period range. Using this method we expect to be able to explore the lithosphere

  13. Changes in northeast African hydrology and vegetation associated with Pliocene-Pleistocene sapropel cycles.

    PubMed

    Rose, Cassaundra; Polissar, Pratigya J; Tierney, Jessica E; Filley, Timothy; deMenocal, Peter B

    2016-07-05

    East African climate change since the Late Miocene consisted of persistent shorter-term, orbital-scale wet-dry cycles superimposed upon a long-term trend towards more open, grassy landscapes. Either or both of these modes of palaeoclimate variability may have influenced East African mammalian evolution, yet the interrelationship between these secular and orbital palaeoclimate signals remains poorly understood. Here, we explore whether the long-term secular climate change was also accompanied by significant changes at the orbital-scale. We develop northeast African hydroclimate and vegetation proxy data for two 100 kyr-duration windows near 3.05 and 1.75 Ma at ODP Site 967 in the eastern Mediterranean basin, where sedimentation is dominated by eastern Sahara dust input and Nile River run-off. These two windows were selected because they have comparable orbital configurations and bracket an important increase in East African C4 grasslands. We conducted high-resolution (2.5 kyr sampling) multiproxy biomarker, H- and C-isotopic analyses of plant waxes and lignin phenols to document orbital-scale changes in hydrology, vegetation and woody cover for these two intervals. Both intervals are dominated by large-amplitude, precession-scale (approx. 20 kyr) changes in northeast African vegetation and rainfall/run-off. The δ(13)Cwax values and lignin phenol composition record a variable but consistently C4 grass-dominated ecosystem for both intervals (50-80% C4). Precessional δDwax cycles were approximately 20-30‰ in peak-to-peak amplitude, comparable with other δDwax records of the Early Holocene African Humid Period. There were no significant differences in the means or variances of the δDwax or δ(13)Cwax data for the 3.05 and 1.75 Ma intervals studied, suggesting that the palaeohydrology and palaeovegetation responses to precessional forcing were similar for these two periods. Data for these two windows suggest that the eastern Sahara did not experience the

  14. Changes in northeast African hydrology and vegetation associated with Pliocene–Pleistocene sapropel cycles

    PubMed Central

    Rose, Cassaundra; Polissar, Pratigya J.; Tierney, Jessica E.; Filley, Timothy

    2016-01-01

    East African climate change since the Late Miocene consisted of persistent shorter-term, orbital-scale wet–dry cycles superimposed upon a long-term trend towards more open, grassy landscapes. Either or both of these modes of palaeoclimate variability may have influenced East African mammalian evolution, yet the interrelationship between these secular and orbital palaeoclimate signals remains poorly understood. Here, we explore whether the long-term secular climate change was also accompanied by significant changes at the orbital-scale. We develop northeast African hydroclimate and vegetation proxy data for two 100 kyr-duration windows near 3.05 and 1.75 Ma at ODP Site 967 in the eastern Mediterranean basin, where sedimentation is dominated by eastern Sahara dust input and Nile River run-off. These two windows were selected because they have comparable orbital configurations and bracket an important increase in East African C4 grasslands. We conducted high-resolution (2.5 kyr sampling) multiproxy biomarker, H- and C-isotopic analyses of plant waxes and lignin phenols to document orbital-scale changes in hydrology, vegetation and woody cover for these two intervals. Both intervals are dominated by large-amplitude, precession-scale (approx. 20 kyr) changes in northeast African vegetation and rainfall/run-off. The δ13Cwax values and lignin phenol composition record a variable but consistently C4 grass-dominated ecosystem for both intervals (50–80% C4). Precessional δDwax cycles were approximately 20–30‰ in peak-to-peak amplitude, comparable with other δDwax records of the Early Holocene African Humid Period. There were no significant differences in the means or variances of the δDwax or δ13Cwax data for the 3.05 and 1.75 Ma intervals studied, suggesting that the palaeohydrology and palaeovegetation responses to precessional forcing were similar for these two periods. Data for these two windows suggest that the eastern Sahara did not experience the

  15. Acquisition of Lateralized Predation Behavior Associated with Development of Mouth Asymmetry in a Lake Tanganyika Scale-Eating Cichlid Fish

    PubMed Central

    Takeuchi, Yuichi; Hori, Michio; Tada, Shinya; Oda, Yoichi

    2016-01-01

    The scale-eating cichlid Perissodus microlepis with asymmetric mouth is an attractive model of behavioral laterality: each adult tears off scales from prey fishes’ left or right flanks according to the direction in which its mouth is skewed. To investigate the development of behavioral laterality and mouth asymmetry, we analyzed stomach contents and lower jaw-bone asymmetry of various-sized P. microlepis (22≤SL<115mm) sampled in Lake Tanganyika. The shapes of the pored scales found in each specimen’s stomach indicated its attack side preference. Early-juvenile specimens (SL<45mm) feeding mainly on zooplankton exhibited slight but significant mouth asymmetry. As the fish acquired scale-eating (45mm≤SL), attack side preference was gradually strengthened, as was mouth asymmetry. Among size-matched individuals, those with more skewed mouths ate more scales. These findings show that behavioral laterality in scale-eating P. microlepis is established in association with development of mouth asymmetry which precedes the behavioral acquisition, and that this synergistic interaction between physical and behavioral literalities may contribute to efficient scale-eating. PMID:26808293

  16. Mechanisms of Vowel Variation in African American English.

    PubMed

    Holt, Yolanda Feimster

    2018-02-15

    This research explored mechanisms of vowel variation in African American English by comparing 2 geographically distant groups of African American and White American English speakers for participation in the African American Shift and the Southern Vowel Shift. Thirty-two male (African American: n = 16, White American controls: n = 16) lifelong residents of cities in eastern and western North Carolina produced heed,hid,heyd,head,had,hod,hawed,whod,hood,hoed,hide,howed,hoyd, and heard 3 times each in random order. Formant frequency, duration, and acoustic analyses were completed for the vowels /i, ɪ, e, ɛ, æ, ɑ, ɔ, u, ʊ, o, aɪ, aʊ, oɪ, ɝ/ produced in the listed words. African American English speakers show vowel variation. In the west, the African American English speakers are participating in the Southern Vowel Shift and hod fronting of the African American Shift. In the east, neither the African American English speakers nor their White peers are participating in the Southern Vowel Shift. The African American English speakers show limited participation in the African American Shift. The results provide evidence of regional and socio-ethnic variation in African American English in North Carolina.

  17. Chemical ecology: studies from East Africa.

    PubMed

    Meinwald, J; Prestwich, G D; Nakanishi, K; Kubo, I

    1978-03-17

    The International Centre of Insect Physiology and Ecology (ICIPE), in Nairobi, provides a laboratory at which a multinational group of scientists pursues interdisciplinary research. In collaboration with their colleagues in biology, ICIPE chemists have characterized the sex pheromones of the tick which serves as a vector of East Coast fever and have identified a termite queen-cell-building pheromone. The structure of many anthropod defensive chemicals have been determined; most interesting of these are the trinervitenes, structurally novel diterpenoids from nasute termites. Several highly active insect antifeedants were discovered using a simple bioassay to screen selected East African plants. These antifeedants may provide leads for the development of new insect-control techniques.

  18. Melamine milk powder and infant formula sold in East Africa.

    PubMed

    Schoder, Dagmar

    2010-09-01

    This is the first study proving the existence of melamine in milk powder and infant formula exported to the African market. A total of 49 milk powder batches were collected in Dar-es-Salaam (Tanzania, East Africa), the center of international trade in East Africa, which serves as a commercial bottleneck and shipment hub for sub-Saharan, Central, and East Africa. Two categories of samples were collected between October and December 2008, immediately after the melamine contamination of Chinese products became public: (i) market brands of all international companies supplying the East African market and (ii) illegally sold products from informal channels. Melamine concentration was determined with the AgraQuant Melamine Sensitive Assay. Despite the national import prohibition of Chinese milk products and unlabeled milk powder in Tanzania, 11% (22 of 200) of inspected microretailers sold milk powder on the local black market. Manufacturers could be identified for only 55% (27) of the 49 investigated batches. Six percent (3 of 49) of all samples and 11% (3 of 27) of all international brand name products tested revealed melamine concentrations up to 5.5 mg/kg of milk powder. This amount represents about twice the tolerable daily intake as suggested by the U.S Food and Drug Administration. Based on our study, we can assume that the number of affected children in Africa is substantial.

  19. African Cenozoic hotpot tectonism: new insights from continent-scale body-wave tomography

    NASA Astrophysics Data System (ADS)

    Bastow, I. D.; Boyce, A.; Caunt, E.; Guilloud De Courbeville, J.; Desai, S.; Kounoudis, R.; Golos, E. M.; Burdick, S.; van der Hilst, R. D.

    2017-12-01

    The African plate is an ideal study locale for mantle plumes and Cenozoic hotspot tectonism. On the eastern side of the continent, the uplifted East African and Ethiopian plateaus, and the 30Ma Ethiopian Traps, are widely considered to be the result of the African Superplume: a broad thermochemical anomaly that originates below southern Africa. Precisely where and how the superplume traverses the mantle transition zone is debated however. On the western side of the continent, the Cameroon Volcanic Line is a hotspot track with no age-progression; it is less easily attributed to the effects of a mantle plume. Central to our understanding of these issues is an improved picture of mantle seismic structure. Body-wave studies of African mantle wave-speed structure are typically limited to regional relative arrival-time studies that utilize data from temporary seismograph networks of aperture less than 1000km. The resulting tomographic images are higher resolution than continent-scale surface-wave models, but anomaly amplitudes cannot be compared from region to region using the relative arrival-time approach: the 0% contour in each region refers to the regional, not global mean. The challenge is thus to incorporate the often-noisy body-wave data from temporary seismograph networks into a continent-scale absolute delay-time model. We achieve this using the new Absolute Arrival-time Recovery Method (AARM) method of Boyce et. al., (2017) and the tomographic inversion approach described by Li et. al., (2008). We invert for mantle wavespeed structure using data recorded since 1990 by temporary networks in the Atlas Mountains, Cameroon, South Africa, East African Rift system, Ethiopia and Madagascar. Our model is well resolved to lower mantle depths beneath these temporary networks, and offers the most detailed picture yet of mantle wavespeed structure beneath Africa. The contrast between East African and Cameroon mantle structure suggests multiple development mechanisms for

  20. Development of Long Chain Alkyl Diol δD as a Paleohydrological Proxy

    NASA Astrophysics Data System (ADS)

    Neary, A.; Russell, J. M.; Cordero, D.

    2017-12-01

    Understanding past hydroclimate is important to better understand and prepare for future climate changes. Past hydrological change is often studied through δD of lipid biomarkers preserved in sediment. Long chain alkyl diols are lipid biomarkers that are widely distributed in lake and marine sediments. These compounds are produced by certain species of diatoms and algae (Eustigmatophytes). Diol δD is expected to record relative precipitation and evaporation, and other lake surface processes. This would be a valuable addition to the repertoire of organic compounds used for hydrologic reconstruction, such as leaf waxes which record precipitation. While long chain alkyl diols present an opportunity to expand the range of compounds available for compound specific isotope analysis, studies of diol δD are scarce. This study aims to compare diol and leaf wax δD records from Lake Tanganyika spanning approximately the past 20 kyrs in order to elucidate the controlling factors on diol δD values and evaluate the effectiveness of such a record as a paleohydrological proxy. If viable, diol δD records could be used to gain a deeper understanding of past climates. δD leaf wax records have been previously measured in Lake Tanganyika cores (Tierney et al., 2008). This study measures δD of long chain alkyl diols from the same cores in order to compare records. Our current measurements show significant deviations of the diol record from the leaf wax record at times when large magnitude changes in the leaf wax record are occurring, such as a less pronounced Younger Dryas and a more gradual decrease in δD values after Heinrich 1 than the sudden shift expressed by the leaf wax record. In addition to generating a diol δD record through time at Lake Tanganyika, we have also measured diol δD in surface sediments from several east African lakes in order to examine the potential for a proxy calibration. A positive correlation between diol and lake water δD has been observed

  1. Early Human Speciation, Brain Expansion and Dispersal Influenced by African Climate Pulses

    PubMed Central

    Shultz, Susanne; Maslin, Mark

    2013-01-01

    Early human evolution is characterised by pulsed speciation and dispersal events that cannot be explained fully by global or continental paleoclimate records. We propose that the collated record of ephemeral East African Rift System (EARS) lakes could be a proxy for the regional paleoclimate conditions experienced by early hominins. Here we show that the presence of these lakes is associated with low levels of dust deposition in both West African and Mediterranean records, but is not associated with long-term global cooling and aridification of East Africa. Hominin expansion and diversification seem to be associated with climate pulses characterized by the precession-forced appearance and disappearance of deep EARS lakes. The most profound period for hominin evolution occurs at about 1.9 Ma; with the highest recorded diversity of hominin species, the appearance of Homo (sensu stricto) and major dispersal events out of East Africa into Eurasia. During this period, ephemeral deep-freshwater lakes appeared along the whole length of the EARS, fundamentally changing the local environment. The relationship between the local environment and hominin brain expansion is less clear. The major step-wise expansion in brain size around 1.9 Ma when Homo appeared was coeval with the occurrence of ephemeral deep lakes. Subsequent incremental increases in brain size are associated with dry periods with few if any lakes. Plio-Pleistocene East African climate pulses as evinced by the paleo-lake records seem, therefore, fundamental to hominin speciation, encephalisation and migration. PMID:24146922

  2. Early human speciation, brain expansion and dispersal influenced by African climate pulses.

    PubMed

    Shultz, Susanne; Maslin, Mark

    2013-01-01

    Early human evolution is characterised by pulsed speciation and dispersal events that cannot be explained fully by global or continental paleoclimate records. We propose that the collated record of ephemeral East African Rift System (EARS) lakes could be a proxy for the regional paleoclimate conditions experienced by early hominins. Here we show that the presence of these lakes is associated with low levels of dust deposition in both West African and Mediterranean records, but is not associated with long-term global cooling and aridification of East Africa. Hominin expansion and diversification seem to be associated with climate pulses characterized by the precession-forced appearance and disappearance of deep EARS lakes. The most profound period for hominin evolution occurs at about 1.9 Ma; with the highest recorded diversity of hominin species, the appearance of Homo (sensu stricto) and major dispersal events out of East Africa into Eurasia. During this period, ephemeral deep-freshwater lakes appeared along the whole length of the EARS, fundamentally changing the local environment. The relationship between the local environment and hominin brain expansion is less clear. The major step-wise expansion in brain size around 1.9 Ma when Homo appeared was coeval with the occurrence of ephemeral deep lakes. Subsequent incremental increases in brain size are associated with dry periods with few if any lakes. Plio-Pleistocene East African climate pulses as evinced by the paleo-lake records seem, therefore, fundamental to hominin speciation, encephalisation and migration.

  3. The birth prevalence of PKU in populations of European, South Asian and sub-Saharan African ancestry living in South East England.

    PubMed

    Hardelid, P; Cortina-Borja, M; Munro, A; Jones, H; Cleary, M; Champion, M P; Foo, Y; Scriver, C R; Dezateux, C

    2008-01-01

    Phenylketonuria (PKU) is an autosomal recessive inborn error of metabolism (OMIM 261600). Treatment with a low-phenylalanine diet following early ascertainment by newborn screening prevents impaired cognitive development, the major disease phenotype in PKU. The overall birth prevalence of PKU in European, Chinese and Korean populations is approximately 1/10,000. Since the human PAH locus contains PKU-causing alleles and polymorphic core haplotypes that describe and corroborate an out-of-Africa range expansion in modern human populations, it is of interest to know the prevalence of PKU in different ethnic groups with diverse geographical origin. We estimated PKU prevalence in South East England, where a sizeable proportion of the population are of Sub-Saharan African or South Asian ancestry. Over the period 1994 to 2004 167 children were diagnosed with PKU. Using birth registration and census data to derive denominators, PKU birth prevalence per 10,000 live births (95% Bayesian credible intervals) was estimated to be 1.14 (0.96-1.33) among white, 0.11 (0.02-0.37) among black, and 0.29 (0.10-0.63) among Asian ethnic groups. This suggests that PKU is up to an order of magnitude less prevalent in populations with Sub-Saharan African and South Asian ancestry that have migrated to the UK.

  4. Genomic footprints of dryland stress adaptation in Egyptian fat-tail sheep and their divergence from East African and western Asia cohorts.

    PubMed

    Mwacharo, Joram M; Kim, Eui-Soo; Elbeltagy, Ahmed R; Aboul-Naga, Adel M; Rischkowsky, Barbara A; Rothschild, Max F

    2017-12-15

    African indigenous sheep are classified as fat-tail, thin-tail and fat-rump hair sheep. The fat-tail are well adapted to dryland environments, but little is known on their genome profiles. We analyzed patterns of genomic variation by genotyping, with the Ovine SNP50K microarray, 394 individuals from five populations of fat-tail sheep from a desert environment in Egypt. Comparative inferences with other East African and western Asia fat-tail and European sheep, reveal at least two phylogeographically distinct genepools of fat-tail sheep in Africa that differ from the European genepool, suggesting separate evolutionary and breeding history. We identified 24 candidate selection sweep regions, spanning 172 potentially novel and known genes, which are enriched with genes underpinning dryland adaptation physiology. In particular, we found selection sweeps spanning genes and/or pathways associated with metabolism; response to stress, ultraviolet radiation, oxidative stress and DNA damage repair; activation of immune response; regulation of reproduction, organ function and development, body size and morphology, skin and hair pigmentation, and keratinization. Our findings provide insights on the complexity of genome architecture regarding dryland stress adaptation in the fat-tail sheep and showcase the indigenous stocks as appropriate genotypes for adaptation planning to sustain livestock production and human livelihoods, under future climates.

  5. Sequence analyses of the distal-less homeobox gene family in East African cichlid fishes reveal signatures of positive selection.

    PubMed

    Diepeveen, Eveline T; Kim, Fabienne D; Salzburger, Walter

    2013-07-17

    Gen(om)e duplication events are hypothesized as key mechanisms underlying the origin of phenotypic diversity and evolutionary innovation. The diverse and species-rich lineage of teleost fishes is a renowned example of this scenario, because of the fish-specific genome duplication. Gene families, generated by this and other gene duplication events, have been previously found to play a role in the evolution and development of innovations in cichlid fishes - a prime model system to study the genetic basis of rapid speciation, adaptation and evolutionary innovation. The distal-less homeobox genes are particularly interesting candidate genes for evolutionary novelties, such as the pharyngeal jaw apparatus and the anal fin egg-spots. Here we study the dlx repertoire in 23 East African cichlid fishes to determine the rate of evolution and the signatures of selection pressure. Four intact dlx clusters were retrieved from cichlid draft genomes. Phylogenetic analyses of these eight dlx loci in ten teleost species, followed by an in-depth analysis of 23 East African cichlid species, show that there is disparity in the rates of evolution of the dlx paralogs. Dlx3a and dlx4b are the fastest evolving dlx genes, while dlx1a and dlx6a evolved more slowly. Subsequent analyses of the nonsynonymous-synonymous substitution rate ratios indicate that dlx3b, dlx4a and dlx5a evolved under purifying selection, while signs of positive selection were found for dlx1a, dlx2a, dlx3a and dlx4b. Our results indicate that the dlx repertoire of teleost fishes and cichlid fishes in particular, is shaped by differential selection pressures and rates of evolution after gene duplication. Although the divergence of the dlx paralogs are putative signs of new or altered functions, comparisons with available expression patterns indicate that the three dlx loci under strong purifying selection, dlx3b, dlx4a and dlx5a, are transcribed at high levels in the cichlids' pharyngeal jaw and anal fin. The dlx

  6. Tectonic stress evolution in the Pan-African Lufilian Arc and its foreland (Katanga, DRC): orogenic bending, late orogenic extensional collapse and transition to rifting

    NASA Astrophysics Data System (ADS)

    Kipata, M. L.; Delvaux, D.; Sebagenzi, M. N.; Cailteux, J.; Sintubin, M.

    2012-04-01

    Between the paroxysm of the Lufilian orogeny at ~ 550 Ma and the late Neogene to Quaternary development of the south-western branch of the East African rift system, the tectonic evolution of the Lufilian Arc and Kundelungu foreland in the Katanga region of the Democratic Republic of Congo remains poorly unknown although it caused important Cu-dominated mineral remobilizations leading to world-class ore deposits. This long period is essentially characterized by brittle tectonic deformations that have been investigated by field studies in open mines spread over the entire arc and foreland. Paleostress tensors were computed for a database of 1450 fault-slip data by interactive stress tensor inversion and data subset separation, and the relative succession of 8 brittle deformation events established. The oldest brittle structures observed are related to the Lufilian brittle compressional climax (stage 1). They have been re-oriented during the orogenic bending that led to the arcuate shape of the belt. Unfolding the stress directions from the first stage allows to reconstruct a consistent NE-SW direction of compression for this stage. Constrictional deformation occurred in the central part of the arc, probably during orogenic bending (Stage 2). After the orogenic bending, a sequence of 3 deformation stages marks the progressive onset of late-orogenic extension: strike-slip deformations (stages 3-4) and late-orogenic arc-parallel extension (stage 5). It is proposed that these 3 stages correspond to orogenic collapse. In early Mesozoic, NW-SE compression was induced by a transpressional inversion, interpreted as induced by far-field stresses generated at the southern active margin of Gondwana (stage 6). Since then, this region was affected by rift-related extension, successively in a NE-SW direction (stage 7, Tanganyika trend) and NW-SE direction (stage 8, Moero trend).

  7. Ambient Noise Tomography of the East African Rift System in Mozambique

    NASA Astrophysics Data System (ADS)

    Domingues, A.; Chamussa, J.; Silveira, G. M.; Custodio, S.; Lebedev, S.; Chang, S.; Ferreira, A. M.; Fonseca, J. F.

    2013-12-01

    A wide range of studies has shown that the cross-correlation of ambient noise can provide an estimate of the Greens functions between pairs of stations. Project MOZART (funded by FCT, Lisbon, PI J. Fonseca) deployed 30 broadband (120s) seismic stations from the SEIS-UK Pool in Central Mozambique and NE South Africa, with the purpose of studying the East African Rift System (EARS) in Mozambique. We applied the Ambient Noise Tomography (ANT) method to broadband seismic data recorded from March 2011 until July 2012. Cross-correlations were computed between all pairs of stations, and from these we obtained Rayleigh wave group velocity dispersion curves for all interstation paths, in the period range from 3 to 50 seconds. We tested various approaches for pre-processing the ambient noise data regarding time-domain and spectral normalisation, as well as the use of phase cross-correlations. Moreover, we examined the robustness of our dispersion maps by splitting our dataset into various sub-sets of Green's functions with similar paths and by quantifying the differences between the dispersion maps obtained from the various sub-sets of data. We find that while the geographical distribution of the group velocity anomalies is well constrained, the amplitudes of the anomalies are slightly less robust. We performed a three-dimensional inversion to obtain the S-wave velocity of the crust and upper mantle. In addition, our preliminary results show a good correlation between the Rayleigh wave group velocity and the geology of Mozambique. In order to extend the investigation to longer periods and, thus, to be able to look into the lithosphere-asthenosphere depth range in the upper mantle, we apply a recent implementation of the surface-wave two-station method (teleseismic interferometry) and augment our dataset with Rayleigh wave phase velocities curves in broad period ranges.

  8. Ambient Noise Tomography of the East African Rift System in Mozambique

    NASA Astrophysics Data System (ADS)

    Domingues, Ana; Custódio, Susana; Chamussa, José; Silveira, Graça; Chang, Sung-Joon; Lebedev, Sergei; Ferreira, Ana; Fonseca, João

    2014-05-01

    Project MOZART - MOZAmbique Rift Tomography (funded by FCT, Lisbon) deployed a total of 30 temporary broadband seismic stations from the SEIS-UK Pool in central and south Mozambique and in NE South Africa. The purpose of this project is the study of the East African Rift System (EARS) in Mozambique. We estimated preliminary locations with the data recorded from April 2011 to July 2012. A total of 307 earthquakes were located, with ML magnitudes ranging from 0.9 to 3.9. We observe a linear northeast-southwest distribution of the seismicity that seems associated to the Inhaminga fault. The seismicity in the northeast sector correlates well with the topography, tracing the Urema rift valley. The seismicity extends to ~300km, reaching the M7 2006 Machaze earthquake area. In order to obtain an initial velocity model of the region, we applied the ambient noise method to the MOZART data and two additional stations from AfricaARRAY. Cross-correlations were computed between all pairs of stations, and we obtained Rayleigh wave group velocity dispersion curves for all interstation paths, in the period range from 3 to 50 seconds. The geographical distribution of the group velocity anomalies is in good agreement with the geology map of Mozambique, having lower group velocities in sedimentary basins areas and higher velocities in cratonic regions. We also observe two main regions with different velocities that may indicate a structure not proposed in previous studies. We perform a three-dimensional inversion to obtain the S-wave velocity of the crust and upper mantle, and in order to extend the investigation to longer periods we apply a recent implementation of the surface-wave two-station method (teleseismic interferometry), while augmenting our dataset with Rayleigh wave phase velocities curves in broad period ranges. In this way we expect to be able to look into the lithosphere-asthenosphere depth range.

  9. A review of visceral leishmaniasis during the conflict in South Sudan and the consequences for East African countries.

    PubMed

    Al-Salem, Waleed; Herricks, Jennifer R; Hotez, Peter J

    2016-08-22

    Visceral leishmaniasis (VL), caused predominantly by Leishmania donovani and transmitted by both Phlebotomus orientalis and Phlebotomus martini, is highly endemic in East Africa where approximately 30 thousands VL cases are reported annually. The largest numbers of cases are found in Sudan - where Phlebotomus orientalis proliferate in Acacia forests especially on Sudan's eastern border with Ethiopia, followed by South Sudan, Ethiopia, Somalia, Kenya and Uganda. Long-standing civil war and unrest is a dominant determinant of VL in East African countries. Here we attempt to identify the correlation between VL epidemics and civil unrest. In this review, literature published between 1955 and 2016 have been gathered from MSF, UNICEF, OCHA, UNHCR, PubMed and Google Scholar to analyse the correlation between conflict and human suffering from VL, which is especially apparent in South Sudan. Waves of forced migration as a consequence of civil wars between 1983 and 2005 have resulted in massive and lethal epidemics in southern Sudan. Following a comprehensive peace agreement, but especially with increased allocation of resources for disease treatment and prevention in 2011, cases of VL declined reaching the lowest levels after South Sudan declared independence. However, in the latest epidemic that began in 2014 after the onset of a civil war in South Sudan, more than 1.5 million displaced refugees have migrated internally to states highly endemic for VL, while 800,000 have fled to neighboring countries. We find a strong relationship between civil unrest and VL epidemics which tend to occur among immunologically naïve migrants entering VL-endemic areas and when Leishmania-infected individuals migrate to new areas and establish additional foci of disease. Further complicating factors in East Africa's VL epidemics include severe lack of access to diagnosis and treatment, HIV/AIDS co-infection, food insecurity and malnutrition. Moreover, cases of post-kala-azar dermal

  10. Neurovirulence comparison of chikungunya virus isolates of the Asian and East/Central/South African genotypes from Malaysia.

    PubMed

    Wei Chiam, Chun; Fun Chan, Yoke; Chai Ong, Kien; Thong Wong, Kum; Sam, I-Ching

    2015-11-01

    Chikungunya virus (CHIKV), an alphavirus of the family Togaviridae, causes fever, polyarthritis and rash. There are three genotypes: West African, Asian and East/Central/South African (ECSA). The latter two genotypes have caused global outbreaks in recent years. Recent ECSA CHIKV outbreaks have been associated with severe neurological disease, but it is not known if different CHIKV genotypes are associated with different neurovirulence. In this study, the neurovirulence of Asian (MY/06/37348) and ECSA (MY/08/065) strains of CHIKV isolated in Malaysia were compared. Intracerebral inoculation of either virus into suckling mice was followed by virus titration, histopathology and gene expression analysis of the harvested brains. Both strains of CHIKV replicated similarly, yet mice infected with MY/06/37348 showed higher mortality. Histopathology findings showed that both CHIKV strains spread within the brain (where CHIKV antigen was localized to astrocytes and neurons) and beyond to skeletal muscle. In MY/06/37348-infected mice, apoptosis, which is associated with neurovirulence in alphaviruses, was observed earlier in brains. Comparison of gene expression showed that a pro-apoptotic gene (eIF2αK2) was upregulated at higher levels in MY/06/37348-infected mice, while genes involved in anti-apoptosis (BIRC3), antiviral responses and central nervous system protection (including CD40, IL-10RA, MyD88 and PYCARD) were upregulated more highly in MY/08/065-infected mice. In conclusion, the higher mortality observed following MY/06/37348 infection in mice is due not to higher viral replication in the brain, but to differentially expressed genes involved in host immune responses. These findings may help to identify therapeutic strategies and biomarkers for neurological CHIKV infections.

  11. Spatial vegetation patterns and neighborhood competition among woody plants in an East African savanna.

    PubMed

    Dohn, Justin; Augustine, David J; Hanan, Niall P; Ratnam, Jayashree; Sankaran, Mahesh

    2017-02-01

    The majority of research on savanna vegetation dynamics has focused on the coexistence of woody and herbaceous vegetation. Interactions among woody plants in savannas are relatively poorly understood. We present data from a 10-yr longitudinal study of spatially explicit growth patterns of woody vegetation in an East African savanna following exclusion of large herbivores and in the absence of fire. We examined plant spatial patterns and quantified the degree of competition among woody individuals. Woody plants in this semiarid savanna exhibit strongly clumped spatial distributions at scales of 1-5 m. However, analysis of woody plant growth rates relative to their conspecific and heterospecific neighbors revealed evidence for strong competitive interactions at neighborhood scales of up to 5 m for most woody plant species. Thus, woody plants were aggregated in clumps despite significantly decreased growth rates in close proximity to neighbors, indicating that the spatial distribution of woody plants in this region depends on dispersal and establishment processes rather than on competitive, density-dependent mortality. However, our documentation of suppressive effects of woody plants on neighbors also suggests a potentially important role for tree-tree competition in controlling vegetation structure and indicates that the balanced-competition hypothesis may contribute to well-known patterns in maximum tree cover across rainfall gradients in Africa. © 2016 by the Ecological Society of America.

  12. A global sensitivity analysis for African sleeping sickness.

    PubMed

    Davis, Stephen; Aksoy, Serap; Galvani, Alison

    2011-04-01

    African sleeping sickness is a parasitic disease transmitted through the bites of tsetse flies of the genus Glossina. We constructed mechanistic models for the basic reproduction number, R0, of Trypanosoma brucei gambiense and Trypanosoma brucei rhodesiense, respectively the causative agents of West and East African human sleeping sickness. We present global sensitivity analyses of these models that rank the importance of the biological parameters that may explain variation in R0, using parameter ranges based on literature, field data and expertize out of Uganda. For West African sleeping sickness, our results indicate that the proportion of bloodmeals taken from humans by Glossina fuscipes fuscipes is the most important factor, suggesting that differences in the exposure of humans to tsetse are fundamental to the distribution of T. b. gambiense. The second ranked parameter for T. b. gambiense and the highest ranked for T. b. rhodesiense was the proportion of Glossina refractory to infection. This finding underlines the possible implications of recent work showing that nutritionally stressed tsetse are more susceptible to trypanosome infection, and provides broad support for control strategies in development that are aimed at increasing refractoriness in tsetse flies. We note though that for T. b. rhodesiense the population parameters for tsetse - species composition, survival and abundance - were ranked almost as highly as the proportion refractory, and that the model assumed regular treatment of livestock with trypanocides as an established practice in the areas of Uganda experiencing East African sleeping sickness.

  13. CLANIMAE: Climatic and Anthropogenic Impacts on African Ecosystems

    NASA Astrophysics Data System (ADS)

    Verschuren, D.; André, L.; Mahy, G.; Cocquyt, C.; Plisnier, P.-D.; Gelorini, V.; Rumes, B.; Lebrun, J.; Bock, L.; Marchant, R.

    2009-04-01

    Global studies of historical land use focusing on the large-scale landscape change that can potentially affect global climate (via effects on surface albedo, aerosols, and the carbon cycle) have concluded that the impact of pre-colonial East African cultures on regional ecosystems was limited, due to very low mean population density. This contrasts with the paradigm in East African archaeology and paleoecology that the onset of anthropogenic deforestation started at least 2500 years ago, following the introduction of iron metallurgy by Bantu immigrants. This conflict highlights the present lack of real data on historical climate-environment-human interactions in East Africa, which are eminently relevant to sustainable natural resource management and biodiversity conservation in a future of continued population growth and global climate change. CLANIMAE responds to the urgent need of a correct long-term perspective to today's climate-environment-human interactions in East Africa, by reconstructing simultaneously the histories of past climate change and of vegetation and water-quality changes over the last 2500 years, through multi-disciplinary analysis of dated lake-sediment records. The climate reconstructions integrate information on biological, geochemical and sedimentological indicators of past changes in the water balance of the study lakes, which cover the climatological gradient from (sub-)humid western Uganda to semi-arid eastern Kenya. Reconstruction of past terrestrial vegetation dynamics is based on analyses of fossil plant pollen and phytoliths, plus the fossil spores of fungi associated with the excrements of large domestic animals as indicators of lake use by pastoralists. The evolution of water quality through time is reconstructed using silicon isotopes in diatom algae as proxy indicator for past phytoplankton productivity, and paleoecological analyses of fossil diatoms and aquatic macrophytes, following calibration of diatom and macrophyte species

  14. Reducing the Burden of Cancer in East Africa

    Cancer.gov

    The mission of CGH is to advance global cancer research, build expertise, and leverage resources across nations to reduce cancer deaths worldwide. To carry out that mission, we facilitate the sharing of knowledge and expertise. CGH's latest effort, the East Africa Cancer Control Leadership Forum, carried out this mission by helping African partners develop their own individual cancer control programs.

  15. Household Density and Infant Care in an East African Society

    ERIC Educational Resources Information Center

    Munroe, Ruth H.; Munroe, Robert L.

    1971-01-01

    A cross-cultural relationship between household density and infant indulgence was investigated among Logoli infants in East Africa. Findings were taken as supportive of the view that socialization practices are influenced by ecological variables. (Author/JB)

  16. 300 Years of East African Climate Variability from Oxygen Isotopes in a Kenya Coral

    NASA Astrophysics Data System (ADS)

    Dunbar, R.

    2003-04-01

    Instrumental records of climate variability from the western Indian Ocean are relatively scarce and short. Here I present a monthly resolution stable isotopic record acquired from a large living coral head (Porites) from the Malindi Marine Reserve, Kenya (3^oS, 40^oE). The annual chronology is precise and is based on exceptionally clear high and low density growth band couplets. The record extends from 1696 to 1996 A.D., making it the longest coral climate record from the Indian Ocean and one of the longest available worldwide. We have analyzed the uppermost portion of the coral colony in triplicate, using 3 separate cores. This upper section, used for calibration purposes, also provides estimates of signal fidelity and noise in the climate recording system internal to the colony. Coral δ18O at this site primarily records SST; linear regression of monthly coral δ18O vs. SST yields a slope of -0.26 ppm δ18O per ^oC, and δ18O explains ˜57% of the SST variance. Additional isotopic variability may result from changes in seawater δ18O due to local runoff or regional evaporation/precipitation balance, but these changes are likely to be small because local rainfall δ18O is not strongly depleted relative to seawater and salinity gradients are small. The coral record indicates a clear warming trend of about 1.5^oC that accelerates in the latest 20th century, superimposed on strong decadal variability that persists throughout the record. In fact, δ18O values in the 1990's exceed the 300 year envelope (they are lower) and correspond with apparently unprecedented coral bleaching in coastal East Africa. The decadal component of the Malindi coral record reflects a regional climate signal spanning much of the western equatorial Indian Ocean. In general, East African SST and rainfall are better correlated with Pacific ENSO indicators than with the Indian Monsoon at all periods (inter-annual through multi-decadal) but the correlation weakens after 1975. One dramatic new

  17. Evolution of the East African rift: Drip magmatism, lithospheric thinning and mafic volcanism

    NASA Astrophysics Data System (ADS)

    Furman, Tanya; Nelson, Wendy R.; Elkins-Tanton, Linda T.

    2016-07-01

    The origin of the Ethiopian-Yemeni Oligocene flood basalt province is widely interpreted as representing mafic volcanism associated with the Afar mantle plume head, with minor contributions from the lithospheric mantle. We reinterpret the geochemical compositions of primitive Oligocene basalts and picrites as requiring a far more significant contribution from the metasomatized subcontinental lithospheric mantle than has been recognized previously. This region displays the fingerprints of mantle plume and lithospheric drip magmatism as predicted from numerical models. Metasomatized mantle lithosphere is not dynamically stable, and heating above the upwelling Afar plume caused metasomatized lithosphere with a significant pyroxenite component to drip into the asthenosphere and melt. This process generated the HT2 lavas observed today in restricted portions of Ethiopia and Yemen now separated by the Red Sea, suggesting a fundamental link between drip magmatism and the onset of rifting. Coeval HT1 and LT lavas, in contrast, were not generated by drip melting but instead originated from shallower, dominantly anhydrous peridotite. Looking more broadly across the East African Rift System in time and space, geochemical data support small volume volcanic events in Turkana (N. Kenya), Chyulu Hills (S. Kenya) and the Virunga province (Western Rift) to be derived ultimately from drip melting. The removal of the gravitationally unstable, metasomatized portion of the subcontinental lithospheric mantle via dripping is correlated in each case with periods of rapid uplift. The combined influence of thermo-mechanically thinned lithosphere and the Afar plume together thus controlled the locus of continental rift initiation between Africa and Arabia and provide dynamic support for the Ethiopian plateau.

  18. The genus Atheris (Serpentes: Viperidae) in East Africa: phylogeny and the role of rifting and climate in shaping the current pattern of species diversity.

    PubMed

    Menegon, M; Loader, S P; Marsden, S J; Branch, W R; Davenport, T R B; Ursenbacher, S

    2014-10-01

    Past climatic and tectonic events are believed to have strongly influenced species diversity in the Eastern Afromontane Biodiversity Hotspot. We investigated the phylogenetic relationships and historical biogeography of the East African genus Atheris (Serpentes: Viperidae), and explored temporal and spatial relationships between Atheris species across Africa, and the impact of palaeoclimatic fluctuations and tectonic movements on cladogenesis of the genus. Using mitochondrial sequence data, the phylogeny of East African species of Atheris shows congruent temporal patterns that link diversification to major tectonic and aridification events within East Africa over the last 15million years (my). Our results are consistent with a scenario of a delayed direct west-east colonisation of the Eastern Arc Mountains of Atheris by the formation of the western rift. Based on the phylogenetic patterns, this terrestrial, forest-associated genus has dispersed into East Africa across a divided route, on both west-southeasterly and west-northeasterly directions (a C-shaped route). Cladogenesis in the Eastern Arc Mountains and Southern Highlands of Tanzania corresponds to late Miocene and Plio-Pleistocene climatic shifts. Taxonomically, our data confirmed the monophyly of Atheris as currently defined, and reveal four major East African clades, three of which occur in discrete mountain ranges. Possible cryptic taxa are identified in the Atheris rungweensis and A. ceratophora clades. Copyright © 2014 Elsevier Inc. All rights reserved.

  19. Reduced host-specificity in a parasite infecting non-littoral Lake Tanganyika cichlids evidenced by intraspecific morphological and genetic diversity

    PubMed Central

    Kmentová, Nikol; Gelnar, Milan; Mendlová, Monika; Van Steenberge, Maarten; Koblmüller, Stephan; Vanhove, Maarten P. M.

    2016-01-01

    Lake Tanganyika is well-known for its high species-richness and rapid radiation processes. Its assemblage of cichlid fishes recently gained momentum as a framework to study parasite ecology and evolution. It offers a rare chance to investigate the influence of a deepwater lifestyle in a freshwater fish-parasite system. Our study represents the first investigation of parasite intraspecific genetic structure related to host specificity in the lake. It focused on the monogenean flatworm Cichlidogyrus casuarinus infecting deepwater cichlids belonging to Bathybates and Hemibates. Morphological examination of C. casuarinus had previously suggested a broad host range, while the lake’s other Cichlidogyrus species are usually host specific. However, ongoing speciation or cryptic diversity could not be excluded. To distinguish between these hypotheses, we analysed intraspecific diversity of C. casuarinus. Monogeneans from nearly all representatives of the host genera were examined using morphometrics, geomorphometrics and genetics. We confirmed the low host-specificity of C. casuarinus based on morphology and nuclear DNA. Yet, intraspecific variation of sclerotized structures was observed. Nevertheless, the highly variable mitochondrial DNA indicated recent population expansion, but no ongoing parasite speciation, confirming, for the first time in freshwater, reduced parasite host specificity in the deepwater realm, probably an adaptation to low host availability. PMID:28004766

  20. Pan-African Genetic Structure in the African Buffalo (Syncerus caffer): Investigating Intraspecific Divergence

    PubMed Central

    Smitz, Nathalie; Berthouly, Cécile; Cornélis, Daniel; Heller, Rasmus; Van Hooft, Pim; Chardonnet, Philippe; Caron, Alexandre; Prins, Herbert; van Vuuren, Bettine Jansen; De Iongh, Hans; Michaux, Johan

    2013-01-01

    The African buffalo (Syncerus caffer) exhibits extreme morphological variability, which has led to controversies about the validity and taxonomic status of the various recognized subspecies. The present study aims to clarify these by inferring the pan-African spatial distribution of genetic diversity, using a comprehensive set of mitochondrial D-loop sequences from across the entire range of the species. All analyses converged on the existence of two distinct lineages, corresponding to a group encompassing West and Central African populations and a group encompassing East and Southern African populations. The former is currently assigned to two to three subspecies (S. c. nanus, S. c. brachyceros, S. c. aequinoctialis) and the latter to a separate subspecies (S. c. caffer). Forty-two per cent of the total amount of genetic diversity is explained by the between-lineage component, with one to seventeen female migrants per generation inferred as consistent with the isolation-with-migration model. The two lineages diverged between 145 000 to 449 000 years ago, with strong indications for a population expansion in both lineages, as revealed by coalescent-based analyses, summary statistics and a star-like topology of the haplotype network for the S. c. caffer lineage. A Bayesian analysis identified the most probable historical migration routes, with the Cape buffalo undertaking successive colonization events from Eastern toward Southern Africa. Furthermore, our analyses indicate that, in the West-Central African lineage, the forest ecophenotype may be a derived form of the savanna ecophenotype and not vice versa, as has previously been proposed. The African buffalo most likely expanded and diverged in the late to middle Pleistocene from an ancestral population located around the current-day Central African Republic, adapting morphologically to colonize new habitats, hence developing the variety of ecophenotypes observed today. PMID:23437100

  1. Maritime vessels carry more than half of growing U.S.-East Africa trade

    DOT National Transportation Integrated Search

    2009-03-01

    Trade between the United States and East African countries : (defi ned in this special report as Burundi, Kenya, : Rwanda, Tanzania, and Uganda) has grown substantially : in recent years, reaching $1.3 billion in value in 2007. : Between 1997 and 200...

  2. Exploring Crustal Structure and Mantle Seismic Anisotropy Associated with the Incipient Southern and Southwestern Branches of the East African Rift System

    NASA Astrophysics Data System (ADS)

    Yu, Y.; Reed, C. A.; Gao, S. S.; Liu, K. H.; Massinque, B.; Mdala, H. S.; Chindandali, P. R. N.; Moidaki, M.; Mutamina, D. M.

    2014-12-01

    In spite of numerous geoscientific studies, the mechanisms responsible for the initiation and development of continental rifts are still poorly understood. The key information required to constrain various geodynamic models on rift initiation can be derived from the crust/mantle structure and anisotropy beneath incipient rifts such as the Southern and Southwestern branches of the East African Rift System. As part of a National Science Foundation funded interdisciplinary project, 50 PASSCAL broadband seismic stations were deployed across the Malawi, Luangwa, and Okavango rift zones from the summer of 2012 to the summer of 2014. Preliminary results from these 50 SAFARI (Seismic Arrays for African Rift Initiation) and adjacent stations are presented utilizing shear-wave splitting (SWS) and P-S receiver function techniques. 1109 pairs of high-quality SWS measurements, consisting of fast polarization orientations and splitting times, have been obtained from a total of 361 seismic events. The results demonstrate dominantly NE-SW fast orientations throughout Botswana as well as along the northwestern flank of the Luangwa rift valley. Meanwhile, fast orientations beneath the eastern Luangwa rift flank rotate from NNW to NNE along the western border of the Malawi rift. Stations located alongside the western Malawi rift border faults yield ENE fast orientations, with stations situated in Mozambique exhibiting more E-W orientations. In the northern extent of the study region, fast orientations parallel the trend of the Rukwa and Usangu rift basins. Receiver function results reveal that, relative to the adjacent Pan-African mobile belts, the Luangwa rift zone has a thin (30 to 35 km) crust. The crustal thickness within the Okavango rift basin is highly variable. Preliminary findings indicate a northeastward thinning along the southeast Okavango border fault system congruent with decreasing extension toward the southwest. The Vp/Vs measurements in the Okavango basin are roughly

  3. Relevance of East African Drill Cores to Human Evolution: the Case of the Olorgesailie Drilling Project

    NASA Astrophysics Data System (ADS)

    Potts, R.

    2016-12-01

    Drill cores reaching the local basement of the East African Rift were obtained in 2012 south of the Olorgesailie Basin, Kenya, 20 km from excavations that document key benchmarks in the origin of Homo sapiens. Sediments totaling 216 m were obtained from two drilling locations representing the past 1 million years. The cores were acquired to build a detailed environmental record spatially associated with the transition from Acheulean to Middle Stone Age technology and extensive turnover in mammalian species. The project seeks precise tests of how climate dynamics and tectonic events were linked with these transitions. Core lithology (A.K. Behrensmeyer), geochronology (A. Deino), diatoms (R.B. Owen), phytoliths (R. Kinyanjui), geochemistry (N. Rabideaux, D. Deocampo), among other indicators, show evidence of strong environmental variability in agreement with predicted high-eccentricity modulation of climate during the evolutionary transitions. Increase in hominin mobility, elaboration of symbolic behavior, and concurrent turnover in mammalian species indicating heightened adaptability to unpredictable ecosystems, point to a direct link between the evolutionary transitions and the landscape dynamics reflected in the Olorgesailie drill cores. For paleoanthropologists and Earth scientists, any link between evolutionary transitions and environmental dynamics requires robust evolutionary datasets pertinent to how selection, extinction, population divergence, and other evolutionary processes were impacted by the dynamics uncovered in drill core studies. Fossil and archeological data offer a rich source of data and of robust environment-evolution explanations that must be integrated into efforts by Earth scientists who seek to examine high-resolution climate records of human evolution. Paleoanthropological examples will illustrate the opportunities that exist for connecting evolutionary benchmarks to the data obtained from drilled African muds. Project members: R. Potts, A

  4. Convergence of gut microbiotas in the adaptive radiations of African cichlid fishes.

    PubMed

    Baldo, Laura; Pretus, Joan Lluís; Riera, Joan Lluís; Musilova, Zuzana; Bitja Nyom, Arnold Roger; Salzburger, Walter

    2017-09-01

    Ecoevolutionary dynamics of the gut microbiota at the macroscale level, that is, in across-species comparisons, are largely driven by ecological variables and host genotype. The repeated explosive radiations of African cichlid fishes in distinct lakes, following a dietary diversification in a context of reduced genetic diversity, provide a natural setup to explore convergence, divergence and repeatability in patterns of microbiota dynamics as a function of the host diet, phylogeny and environment. Here we characterized by 16S rRNA amplicon sequencing the gut microbiota of 29 cichlid species from two distinct lakes/radiations (Tanganyika and Barombi Mbo) and across a broad dietary and phylogenetic range. Within each lake, a significant deviation between a carnivorous and herbivorous lifestyle was found. Herbivore species were characterized by an increased bacterial taxonomic and functional diversity and converged in key compositional and functional community aspects. Despite a significant lake effect on the microbiota structure, this process has occurred with remarkable parallels in the two lakes. A metabolic signature most likely explains this trend, as indicated by a significant enrichment in herbivores/omnivores of bacterial taxa and functions associated with fiber degradation and detoxification of plant chemical compounds. Overall, compositional and functional aspects of the gut microbiota individually and altogether validate and predict main cichlid dietary habits, suggesting a fundamental role of gut bacteria in cichlid niche expansion and adaptation.

  5. Convergence of gut microbiotas in the adaptive radiations of African cichlid fishes

    PubMed Central

    Baldo, Laura; Pretus, Joan Lluís; Riera, Joan Lluís; Musilova, Zuzana; Bitja Nyom, Arnold Roger; Salzburger, Walter

    2017-01-01

    Ecoevolutionary dynamics of the gut microbiota at the macroscale level, that is, in across-species comparisons, are largely driven by ecological variables and host genotype. The repeated explosive radiations of African cichlid fishes in distinct lakes, following a dietary diversification in a context of reduced genetic diversity, provide a natural setup to explore convergence, divergence and repeatability in patterns of microbiota dynamics as a function of the host diet, phylogeny and environment. Here we characterized by 16S rRNA amplicon sequencing the gut microbiota of 29 cichlid species from two distinct lakes/radiations (Tanganyika and Barombi Mbo) and across a broad dietary and phylogenetic range. Within each lake, a significant deviation between a carnivorous and herbivorous lifestyle was found. Herbivore species were characterized by an increased bacterial taxonomic and functional diversity and converged in key compositional and functional community aspects. Despite a significant lake effect on the microbiota structure, this process has occurred with remarkable parallels in the two lakes. A metabolic signature most likely explains this trend, as indicated by a significant enrichment in herbivores/omnivores of bacterial taxa and functions associated with fiber degradation and detoxification of plant chemical compounds. Overall, compositional and functional aspects of the gut microbiota individually and altogether validate and predict main cichlid dietary habits, suggesting a fundamental role of gut bacteria in cichlid niche expansion and adaptation. PMID:28509910

  6. Back to Africa in the 21st Century: The Cultural Reconnection Experiences of African American Women

    ERIC Educational Resources Information Center

    Arunga, Marcia Tate

    2017-01-01

    The purpose of this study is to examine the lived experiences of 18 African American women who went to Kenya, East Africa as part of a Cultural Reconnection delegation. A qualitative narrative inquiry method was used for data collection. This was an optimal approach to honoring the authentic voices of African American women. Eighteen African…

  7. A 3 million year index for North African humidity/aridity and the implication of potential pan-African Humid periods

    NASA Astrophysics Data System (ADS)

    Grant, Katharine M.; Rohling, Eelco J.; Westerhold, Thomas; Zabel, Matthias; Heslop, David; Konijnendijk, Tiuri; Lourens, Lucas

    2017-09-01

    Mediterranean sediments are valuable archives of both African monsoon variability and higher-latitude climate processes, and can also be used to provide an environmental context for early human migrations and settlements. However, the long history of Mediterranean palaeoclimate studies largely pre-dates the advent of widespread x-ray fluorescence (XRF) core-scanning, so there are few continuous and high-resolution geochemical records from this key region that extend beyond the last glacial cycle. Here we present XRF core-scanning results for ODP Site 967 (Eastern Mediterranean) that have been fully-calibrated into element concentrations spanning the last 3 million years (My). Comparison with independent geochemical data from conventional XRF highlights disparities for certain element/element ratios, thus suggesting the need for caution when taking ratios of scanning XRF data. Principal component analysis of the calibrated XRF dataset reveals two dominant components: detrital inputs (PC1) and a 'sapropel' (≈monsoon run-off) signal (PC2), which we use to establish a new orbitally-tuned chronology. We observe inverse covariation between PC2 and a previously published aeolian dust record from ODP Site 967 (Larrasoaña et al., 2003), and combine these records to produce a composite index of humidity and aridity for the wider North African region over the past 3 My. We propose that by combining run-off and dust signals in a single metric, our index captures the effects of both strengthening/northward migration (increased run-off) and weakening/southward retreat (increased dust) of the North African monsoon. Comparison of the index with published records of Northwest and East African palaeohumidity suggests that it tracks the timing of ;Green Sahara Periods; throughout the Plio-Pleistocene, and that at least 30 of these intervals coincided with increased humidity across East Africa. We tentatively suggest that these specific episodes may be termed ;pan-African Humid

  8. Academic Programmes in Universities in East Africa: A Catalyst to Development

    ERIC Educational Resources Information Center

    Karimi, Florah Katanu

    2015-01-01

    The types of academic programmes offered by universities, both public and private, are considered to be critical to the realization of development agendas. This study was descriptive in nature and sought to establish whether universities in the East African region were offering academic programmes that were relevant to the realization of the…

  9. Upper mantle and transition zone structure beneath Ethiopia: Regional evidence for the African Superplume

    NASA Astrophysics Data System (ADS)

    Benoit, M. H.; Nyblade, A. A.; Pasyanos, M.; Owens, T. J.

    2005-12-01

    Throughout much of the Cenozoic, Ethiopia has undergone extensive tectonism, including rifting, volcanism and uplift, and the origin of this tectonism remains enigmatic. While the cause of the tectonism has often been attributed to one or more mantle plumes, recent global tomographic studies suggest that the African Superplume, a broad, through-going mantle upwelling, may be related to the tectonism. To further understand the origin of the tectonism in Ethiopia, we employ a variety of methods, including an S wave travel time body wave tomography, receiver function analysis of the 410 and 660 km discontinuities, and surface wave tomography. Using data from the Ethiopia Broadband Seismic Experiment [2000-2002], we computed new S wave models of the upper mantle seismic velocity structure from 150 - 400 km depth. The S wave model revealed an elongated low wave speed region that is deep (> 300 km) and wide (> 500 km). The location of the low wave speed anomaly aligns with the Afar Depression and Main Ethiopian Rift in the uppermost mantle, but the center of the anomaly shifts to the west with depth. Results from receiver function stacking of the 410 and 660 km discontinuities show a shallow 660 beneath most of Ethiopia, implying that the low wave speed anomaly found in the S wave model likely extends to at least 660 km depth. This result suggests that the low velocity anomaly may be related to the African Superplume. A group velocity surface wave tomographic study of East Africa was also computed using data from permanent and temporary stations from Africa and Arabia. Results of this study reveal low Sn velocities beneath much of the region, and suggest that low elevations found in the region between the Ethiopian and East African Plateaus likely reflect an isostatic response to crustal thinning. If the crust in this region had not been thinned by approximately 10 - 15 km, then it is likely that the high elevation of the Ethiopian and East African Plateaus would be

  10. Cenozoic magmatism throughout east Africa resulting from impact of a single plume

    NASA Astrophysics Data System (ADS)

    Ebinger, C. J.; Sleep, N. H.

    1998-10-01

    The geology of northern and central Africa is characterized by broad plateaux, narrower swells and volcanism occurring from ~45Myr ago to the present. The greatest magma volumes occur on the >1,000-km-wide Ethiopian and east African plateaux, which are transected by the Red Sea, Gulf of Aden and east African rift systems, active since the late Oligocene epoch. Evidence for one or more mantle plumes having impinged beneath the plateaux comes from the dynamic compensation inferred from gravity studies, the generally small degrees of extension observed and the geochemistry of voluminous eruptive products. Here we present a model of a single large plume impinging beneath the Ethiopian plateau that takes into account lateral flow and ponding of plume material in pre-existing zones of lithospheric thinning. We show that this single plume can explain the distribution and timing of magmatism and uplift throughout east Africa. The thin lithosphere beneath the Mesozoic-Palaeogene rifts and passive margins of Africa and Arabia guides the lateral flow of plume material west to the Cameroon volcanic line and south to the Comoros Islands. Our results demonstrate the strong control that the lithosphere exerts on the spatial distribution of plume-related melting and magmatism.

  11. Close Relationship between West Nile Virus from Turkey and Lineage 1 Strain from Central African Republic

    PubMed Central

    Ergunay, Koray; Bakonyi, Tamas; Nowotny, Norbert

    2015-01-01

    We sequenced West Nile viruses (WNVs) from Turkey and found close relationships to WNV lineage 1 strain ArB310/67 from the Central African Republic, distinct from other WNVs circulating in the Mediterranean Basin, eastern Europe, and the Middle East. These findings suggest independent introductions of WNV strains from Africa to the Middle East. PMID:25625703

  12. Ecosystem productivity and water stress in tropical East Africa: A Case Study of the 2010-11 drought

    NASA Astrophysics Data System (ADS)

    Robinson, E. S.; Yang, X.; Lee, J. E.

    2015-12-01

    The characterization of changes in ecosystem productivity as a consequence of water stress and changing precipitation regimes is critical in defining the response of tropical ecosystems to water stress and projecting future land cover transitions in the East African tropics. Through the analysis of solar-induced chlorophyll fluorescence (SIF), soil moisture, rainfall and reanalysis data, this paper characterizes the 2010-11 drought in tropical East Africa. We demonstrated that SIF, a proxy of ecosystem productivity, varied with water availability during the 2010-11 drought. A comparison of the 2010-11 drought to previous regional droughts revealed that the consecutive failure of rainy seasons in fall 2010 and spring 2011 yielded a drought that is distinguished not only in intensity, but also in spatial and temporal extent as compared to an average of previous regional droughts: the 2010-11 event extended further east and with greater intensity in the southern hemisphere. Anomalously low SIF values during the 2010-11 drought are strongly correlated with those of soil moisture and precipitation. SIF also demonstrated a stronger temporal sensitivity to accumulated water deficit as compared to the conventional Normalized Difference Vegetation Index (NDVI), which approximates photosynthetic potential (chlorophyll content and leaf mass), from the Moderate Resolution Imaging Spectroradiometer (MODIS). Anomalously high rainfall during the dry seasons preceding failed rainy seasons suggest that the seasonality of East African rainfall may be transitioning from a regime characterized by biannual monsoons to one with increasing convective rainfall. Rising boundary layer height during the dry season further substantiates this conclusion by suggesting a transition towards increased deep convection during the summers. This work demonstrated the unique characteristics of the 2010-11 East African drought, and the ability of SIF to track the levels of water stress during the

  13. Foraging ecology of an endemic shorebird, the African Black Oystercatcher ( Haematopus moquini) on the south-east coast of South Africa

    NASA Astrophysics Data System (ADS)

    Kohler, Sophie; Bonnevie, Bo; McQuaid, Christopher; Jaquemet, Sébastien

    2009-09-01

    We investigated small-medium (1-300 km) scale variation in the foraging ecology of the African Black Oystercatcher during its breeding season, using traditional diet analysis coupled with carbon and nitrogen stable isotope analysis. Fieldwork was conducted between January and March 2006 and 2007, on rocky shores on the south-east coast of South Africa at East London, Kenton and Port Elizabeth. Middens of shelled prey left by adults feeding their chicks were collected from five territories and the abundances of the collected prey on the foraging areas were estimated using quadrats. Blood samples from 45 birds (16 females, 10 males and 19 chicks) and tissues from the predominant prey species on the territory of each breeding pair were collected for isotope analysis. The Manly-Chesson selectivity index revealed that adults feed their chicks preferentially with the limpet Scutellastra cochlear and the Mediterranean mussel Mytilus galloprovincialis, if available. A slight enrichment in the 15N stable-carbon isotope signature was observed towards the west in both prey and oystercatchers. Differences in isotope signatures between males and females from the same breeding pair indicate sex-related differences in the diet. Both had signatures indicating a mixed diet, but with males exhibiting a signature closer to that of limpets and females closer to that of mussels. In the single case where mussels were rare on the feeding territory, the two members of a pair showed carbon signatures which were identical and very similar to that of limpets. These results indicate dietary partitioning between genders in breeding pairs.

  14. Assessing Motivation of Collegiate African American Males in a Rural Area of East Texas

    ERIC Educational Resources Information Center

    Green, Calvin Earl

    2013-01-01

    The purpose of this study was to investigate achievement factors of African American males on a college campus in the state of Texas, primarily a private 4-year college that serves a predominantly African American student population. The researcher used a case study approach to determine factors that affect the persistence of these college-aged…

  15. Tectonics, orbital forcing, global climate change, and human evolution in Africa: introduction to the African paleoclimate special volume.

    PubMed

    Maslin, Mark A; Christensen, Beth

    2007-11-01

    The late Cenozoic climate of Africa is a critical component for understanding human evolution. African climate is controlled by major tectonic changes, global climate transitions, and local variations in orbital forcing. We introduce the special African Paleoclimate Issue of the Journal of Human Evolution by providing a background for and synthesis of the latest work relating to the environmental context for human evolution. Records presented in this special issue suggest that the regional tectonics, appearance of C(4) plants in East Africa, and late Cenozoic global cooling combined to produce a long-term drying trend in East Africa. Of particular importance is the uplift associated with the East African Rift Valley formation, which altered wind flow patterns from a more zonal to more meridinal direction. Results in this volume suggest a marked difference in the climate history of southern and eastern Africa, though both are clearly influenced by the major global climate thresholds crossed in the last 3 million years. Papers in this volume present lake, speleothem, and marine paleoclimate records showing that the East African long-term drying trend is punctuated by episodes of short, alternating periods of extreme wetness and aridity. These periods of extreme climate variability are characterized by the precession-forced appearance and disappearance of large, deep lakes in the East African Rift Valley and paralleled by low and high wind-driven dust loads reaching the adjacent ocean basins. Dating of these records show that over the last 3 million years such periods only occur at the times of major global climatic transitions, such as the intensification of Northern Hemisphere Glaciation (2.7-2.5 Ma), intensification of the Walker Circulation (1.9-1.7 Ma), and the Mid-Pleistocene Revolution (1-0.7 Ma). Authors in this volume suggest this onset occurs as high latitude forcing in both Hemispheres compresses the Intertropical Convergence Zone so that East Africa

  16. Maritime History in Mozambique and East Africa: The Urgent Need for the Proper Study and Preservation of Endangered Underwater Cultural Heritage

    NASA Astrophysics Data System (ADS)

    Duarte, Ricardo Teixeira

    2012-10-01

    The East African coast is a rich domain for underwater cultural heritage, whose archaeological remains are only beginning to reveal the extent of indigenous nautical technology, regional and international social contacts, and far-reaching maritime trade routes sailed for millennia. The diversity of remains found under water range from cultures up and down the East African coastline to further afield: from China, points surrounding the Indian Ocean, to the Persian Gulf, Middle East and Europe. In Mozambique, important steps to investigate and preserve this heritage have been taken over the last 20 years by several groups of local scholars in collaboration with international research institutions. However, this heritage, especially that which lies along the northern Mozambique coast, has also been subjected to extensive and serious disturbance by commercially-oriented salvage programs. These salvage activities have not only had a very negative impact on the state of the cultural resources themselves, but have also prevented the access of legitimate scholars to these resources—particularly grave is the intervention at Mozambique Island, a UNESCO World Heritage Site. Among the meritorious efforts to mitigate this situation, in Mozambique and world-wide, the 2001 UNESCO Convention for the Protection of the Underwater Cultural Heritage is an outstanding initiative and needs to be ratified by Mozambique and other East African states.

  17. Life history change in response to fishing and an introduced predator in the East African cyprinid Rastrineobola argentea

    PubMed Central

    Sharpe, Diana M T; Wandera, Silvester B; Chapman, Lauren J

    2012-01-01

    Fishing and introduced species are among the most important stressors affecting freshwaters and can also be strong selective agents. We examined the combined effects of commercial fishing and an introduced predator (Nile perch, Lates niloticus) on life history traits in an African cyprinid fish (Rastrineobola argentea) native to the Lake Victoria basin in East Africa. To understand whether these two stressors have driven shifts in life history traits of R. argentea, we tested for associations between life history phenotypes and the presence/absence of stressors both spatially (across 10 Ugandan lakes) and temporally (over four decades in Lake Victoria). Overall, introduced Nile perch and fishing tended to be associated with a suite of life history responses in R. argentea, including: decreased body size, maturation at smaller sizes, and increased reproductive effort (larger eggs; and higher relative fecundity, clutch volume, and ovary weight). This is one of the first well-documented examples of fisheries-induced phenotypic change in a tropical, freshwater stock; the magnitude of which raises some concerns for the long-term sustainability of this fishery, now the most important (by mass) in Lake Victoria. PMID:23144655

  18. Life history change in response to fishing and an introduced predator in the East African cyprinid Rastrineobola argentea.

    PubMed

    Sharpe, Diana M T; Wandera, Silvester B; Chapman, Lauren J

    2012-11-01

    Fishing and introduced species are among the most important stressors affecting freshwaters and can also be strong selective agents. We examined the combined effects of commercial fishing and an introduced predator (Nile perch, Lates niloticus) on life history traits in an African cyprinid fish (Rastrineobola argentea) native to the Lake Victoria basin in East Africa. To understand whether these two stressors have driven shifts in life history traits of R. argentea, we tested for associations between life history phenotypes and the presence/absence of stressors both spatially (across 10 Ugandan lakes) and temporally (over four decades in Lake Victoria). Overall, introduced Nile perch and fishing tended to be associated with a suite of life history responses in R. argentea, including: decreased body size, maturation at smaller sizes, and increased reproductive effort (larger eggs; and higher relative fecundity, clutch volume, and ovary weight). This is one of the first well-documented examples of fisheries-induced phenotypic change in a tropical, freshwater stock; the magnitude of which raises some concerns for the long-term sustainability of this fishery, now the most important (by mass) in Lake Victoria.

  19. The North African Franchise: AQIM’s Threat to U.S. Security. Strategic Insights, Volume 8, Issue 5

    DTIC Science & Technology

    2009-12-01

    The North African Franchise : AQIM’s Threat to U.S. Security Strategic Insights, Volume VIII, Issue 5 (December 2009) By Captain Russell J. Isaacs...the U.S. Government. Abstract Al Qaeda of the Islamic Maghreb (AQIM) is a growing and evolving North African franchise of Al Qaeda. While the group...in towns east of Algiers. Although this attack officially marked the emergence of Al Qaeda of the Islamic Maghreb (AQIM), a North African franchise

  20. Climate warming reduces fish production and benthic habitat in Lake Tanganyika, one of the most biodiverse freshwater ecosystems

    USGS Publications Warehouse

    Cohen, Andrew S.; Gergurich, Elizabeth L.; Kraemer, Benjamin M.; McGlue, Michael M.; McIntyre, Peter B.; Russell, James M.; Simmons, Jack D.; Swarzenski, Peter W.

    2016-01-01

    Warming climates are rapidly transforming lake ecosystems worldwide, but the breadth of changes in tropical lakes is poorly documented. Sustainable management of freshwater fisheries and biodiversity requires accounting for historical and ongoing stressors such as climate change and harvest intensity. This is problematic in tropical Africa, where records of ecosystem change are limited and local populations rely heavily on lakes for nutrition. Here, using a ∼1,500-y paleoecological record, we show that declines in fishery species and endemic molluscs began well before commercial fishing in Lake Tanganyika, Africa’s deepest and oldest lake. Paleoclimate and instrumental records demonstrate sustained warming in this lake during the last ∼150 y, which affects biota by strengthening and shallowing stratification of the water column. Reductions in lake mixing have depressed algal production and shrunk the oxygenated benthic habitat by 38% in our study areas, yielding fish and mollusc declines. Late-20th century fish fossil abundances at two of three sites were lower than at any other time in the last millennium and fell in concert with reduced diatom abundance and warming water. A negative correlation between lake temperature and fish and mollusc fossils over the last ∼500 y indicates that climate warming and intensifying stratification have almost certainly reduced potential fishery production, helping to explain ongoing declines in fish catches. Long-term declines of both benthic and pelagic species underscore the urgency of strategic efforts to sustain Lake Tanganyika’s extraordinary biodiversity and ecosystem services.

  1. Capacity Building and Financing Oral Health in the African and Middle East Region.

    PubMed

    Mumghamba, E G; Joury, E; Fatusi, O; Ober-Oluoch, J; Onigbanjo, R J; Honkala, S

    2015-07-01

    Many low- and middle-income countries do not yet have policies to implement effective oral health programs. A reason is lack of human and financial resources. Gaps between resource needs and available health funding are widening. By building capacity, countries aim to improve oral health through actions by oral health care personnel and oral health care organizations and their communities. Capacity building involves achieving measurable and sustainable results in training, research, and provision of care. Actions include advancement of knowledge, attitudes and skills, expansion of support, and development of cohesiveness and partnerships. The aim of this critical review is to review existing knowledge and identify gaps and variations between and within different income levels in relation to the capacity building and financing oral health in the African and Middle East region (AMER). A second aim is to formulate research priorities and outline a research agenda for capacity building and financing to improve oral health and reduce oral health inequalities in the AMER. The article focuses on capacity building for oral health and oral health financing in the AMER of the IADR. In many communities in the AMER, there are clear and widening gaps between the dental needs and the existing capacity to meet these needs in terms of financial and human resources. Concerted efforts are required to improve access to oral health care through appropriate financing mechanisms, innovative health insurance schemes, and donor support and move toward universal oral health care coverage to reduce social inequality in the region. It is necessary to build capacity and incentivize the workforce to render evidence-based services as well as accessing funds to conduct research on equity and social determinants of oral health while promoting community engagement and a multidisciplinary approach. © International & American Associations for Dental Research 2015.

  2. An analysis of contemporary East African folk psychotherapy.

    PubMed

    Rappaport, H; Dent, P L

    1979-03-01

    In an effort to identify the characteristics of folk psychotherapy that could account for its tenacity in East Africa, a total of 31 Tanzanian shamans were studied. It was found that patients with emotional problems make use of both the folk and Western therapists and that a clear conceptual distinction is made between the services offered. The range of techniques used, style of service delivered, and the fundamental (or underlying) model of causation were all analysed. It was concluded that folk therapy is an effective approach to psychosocial disorders which, in the future, should be considered a dynamic supplement to Western practices. Additionally, based on the appeal of the medicine man, new directions for Western psychotherapy were suggested.

  3. A south equatorial African precipitation dipole and the associated atmospheric circulation

    NASA Astrophysics Data System (ADS)

    Dezfuli, A. K.; Zaitchik, B.; Gnanadesikan, A.

    2013-12-01

    South Equatorial Africa (SEA) is a climatically diverse region that includes a dramatic topographic and vegetation contrast between the lowland, humid Congo basin to the west and the East African Plateau to the east. Due to lack of conventional weather data and a tendency for researchers to treat East and western Africa as separate regions, dynamics of the atmospheric water cycle across SEA have received relatively little attention, particularly at subseasonal timescales. Both western and eastern sectors of SEA are affected by large-scale drivers of the water cycle associated with Atlantic variability (western sector), Indian Ocean variability (eastern sector) and Pacific variability (both sectors). However, a specific characteristic of SEA is strong heterogeneity in interannual rainfall variability that cannot be explained by large-scale climatic phenomena. For this reason, this study examines regional climate dynamics on daily time-scale with a focus on the role that the abrupt topographic contrast between the lowland Congo and the East African highlands plays in driving rainfall behavior on short timescales. Analysis of daily precipitation data during November-March reveals a zonally-oriented dipole mode over SEA that explains the leading pattern of weather-scale precipitation variability in the region. The separating longitude of the two poles is coincident with the zonal variation of topography. An anomalous counter-clockwise atmospheric circulation associated with the dipole mode appears over the entire SEA. The circulation is triggered by its low-level westerly component, which is in turn generated by an interhemispheric pressure gradient. These enhanced westerlies hit the East African highlands and produce topographically-driven low-level convergence and convection that further intensifies the circulation. Recent studies have shown that under climate change the position and intensity of subtropical highs in both hemispheres and the intensity of

  4. Higher Levels of Neanderthal Ancestry in East Asians than in Europeans

    PubMed Central

    Wall, Jeffrey D.; Yang, Melinda A.; Jay, Flora; Kim, Sung K.; Durand, Eric Y.; Stevison, Laurie S.; Gignoux, Christopher; Woerner, August; Hammer, Michael F.; Slatkin, Montgomery

    2013-01-01

    Neanderthals were a group of archaic hominins that occupied most of Europe and parts of Western Asia from ∼30,000 to 300,000 years ago (KYA). They coexisted with modern humans during part of this time. Previous genetic analyses that compared a draft sequence of the Neanderthal genome with genomes of several modern humans concluded that Neanderthals made a small (1–4%) contribution to the gene pools of all non-African populations. This observation was consistent with a single episode of admixture from Neanderthals into the ancestors of all non-Africans when the two groups coexisted in the Middle East 50–80 KYA. We examined the relationship between Neanderthals and modern humans in greater detail by applying two complementary methods to the published draft Neanderthal genome and an expanded set of high-coverage modern human genome sequences. We find that, consistent with the recent finding of Meyer et al. (2012), Neanderthals contributed more DNA to modern East Asians than to modern Europeans. Furthermore we find that the Maasai of East Africa have a small but significant fraction of Neanderthal DNA. Because our analysis is of several genomic samples from each modern human population considered, we are able to document the extent of variation in Neanderthal ancestry within and among populations. Our results combined with those previously published show that a more complex model of admixture between Neanderthals and modern humans is necessary to account for the different levels of Neanderthal ancestry among human populations. In particular, at least some Neanderthal–modern human admixture must postdate the separation of the ancestors of modern European and modern East Asian populations. PMID:23410836

  5. Estimated macronutrient and fatty acid intakes from an East African Paleolithic diet.

    PubMed

    Kuipers, Remko S; Luxwolda, Martine F; Dijck-Brouwer, D A Janneke; Eaton, S Boyd; Crawford, Michael A; Cordain, Loren; Muskiet, Frits A J

    2010-12-01

    Our genome adapts slowly to changing conditions of existence. Many diseases of civilisation result from mismatches between our Paleolithic genome and the rapidly changing environment, including our diet. The objective of the present study was to reconstruct multiple Paleolithic diets to estimate the ranges of nutrient intakes upon which humanity evolved. A database of, predominantly East African, plant and animal foods (meat/fish) was used to model multiple Paleolithic diets, using two pathophysiological constraints (i.e. protein < 35 energy % (en%) and linoleic acid (LA) >1.0 en%), at known hunter-gatherer plant/animal food intake ratios (range 70/30-30/70 en%/en%). We investigated selective and non-selective savannah, savannah/aquatic and aquatic hunter-gatherer/scavenger foraging strategies. We found (range of medians in en%) intakes of moderate-to-high protein (25-29), moderate-to-high fat (30-39) and moderate carbohydrates (39-40). The fatty acid composition was SFA (11.4-12.0), MUFA (5.6-18.5) and PUFA (8.6-15.2). The latter was high in α-linolenic acid (ALA) (3.7-4.7 en%), low in LA (2.3-3.6 en%), and high in long-chain PUFA (LCP; 4.75-25.8 g/d), LCP n-3 (2.26-17.0 g/d), LCP n-6 (2.54-8.84 g/d), ALA/LA ratio (1.12-1.64 g/g) and LCP n-3/LCP n-6 ratio (0.84-1.92 g/g). Consistent with the wide range of employed variables, nutrient intakes showed wide ranges. We conclude that compared with Western diets, Paleolithic diets contained consistently higher protein and LCP, and lower LA. These are likely to contribute to the known beneficial effects of Paleolithic-like diets, e.g. through increased satiety/satiation. Disparities between Paleolithic, contemporary and recommended intakes might be important factors underlying the aetiology of common Western diseases. Data on Paleolithic diets and lifestyle, rather than the investigation of single nutrients, might be useful for the rational design of clinical trials.

  6. Proceedings of the African Pathologists Summit; March 22-23, 2013; Dakar, Senegal: a summary.

    PubMed

    2015-01-01

    This report presents the proceedings of the African Pathologists Summit, held under the auspices of the African Organization for Research and Training in Cancer. To deliberate on the challenges and constraints of the practice of pathology in Sub-Saharan Africa and the avenues for addressing them. Collaborating organizations included the American Society for Clinical Pathology; Association of Pathologists of Nigeria; British Division of the International Academy of Pathology; College of Pathologists of East, Central and Southern Africa; East African Division of the International Academy of Pathology; Friends of Africa-United States and Canadian Academy of Pathology Initiative; International Academy of Pathology; International Network for Cancer Treatment and Research; National Cancer Institute; National Health and Laboratory Service of South Africa; Nigerian Postgraduate Medical College; Royal College of Pathologists; West African Division of the International Academy of Pathology; and Faculty of Laboratory Medicine of the West African College of Physicians. Information on the status of the practice of pathology was based on the experience of the participants, who are current or past practitioners of pathology or are involved in pathology education and research in Sub-Saharan Africa. The deliberations were carried out through presentations and working discussion groups. The significant lack of professional and technical personnel, inadequate infrastructure, limited training opportunities, poor funding of pathology services in Sub-Saharan Africa, and their significant impact on patient care were noted. The urgency of addressing these issues was recognized, and the recommendations that were made are contained in this report.

  7. Loci associated with skin pigmentation identified in African populations

    PubMed Central

    Crawford, Nicholas G.; Kelly, Derek E.; Hansen, Matthew E. B.; Beltrame, Marcia H.; Fan, Shaohua; Bowman, Shanna L.; Jewett, Ethan; Ranciaro, Alessia; Thompson, Simon; Lo, Yancy; Pfeifer, Susanne P.; Jensen, Jeffrey D.; Campbell, Michael C.; Beggs, William; Hormozdiari, Farhad; Mpoloka, Sununguko Wata; Mokone, Gaonyadiwe George; Nyambo, Thomas; Meskel, Dawit Wolde; Belay, Gurja; Haut, Jake; Rothschild, Harriet; Zon, Leonard; Zhou, Yi; Kovacs, Michael A.; Xu, Mai; Zhang, Tongwu; Bishop, Kevin; Sinclair, Jason; Rivas, Cecilia; Elliot, Eugene; Choi, Jiyeon; Li, Shengchao A.; Hicks, Belynda; Burgess, Shawn; Abnet, Christian; Watkins-Chow, Dawn E.; Oceana, Elena; Song, Yun S.; Eskin, Eleazar; Brown, Kevin M.; Marks, Michael S.; Loftus, Stacie K.; Pavan, William J.; Yeager, Meredith; Chanock, Stephen; Tishkoff, Sarah

    2017-01-01

    Despite the wide range of skin pigmentation in humans, little is known about its genetic basis in global populations. Examining ethnically diverse African genomes, we identify variants in or near SLC24A5, MFSD12, DDB1, TMEM138, OCA2 and HERC2 that are significantly associated with skin pigmentation. Genetic evidence indicates that the light pigmentation variant at SLC24A5 was introduced into East Africa by gene flow from non-Africans. At all other loci, variants associated with dark pigmentation in Africans are identical by descent in southern Asian and Australo-Melanesian populations. Functional analyses indicate that MFSD12 encodes a lysosomal protein that affects melanogenesis in zebrafish and mice, and that mutations in melanocyte-specific regulatory regions near DDB1/TMEM138 correlate with expression of UV response genes under selection in Eurasians. PMID:29025994

  8. The P and S wave velocity structure of the mantle beneath eastern Africa and the African superplume anomaly

    NASA Astrophysics Data System (ADS)

    Mulibo, Gabriel D.; Nyblade, Andrew A.

    2013-08-01

    P and S relative arrival time residuals from teleseismic earthquakes recorded on over 60 temporary AfricaArray broadband seismic stations deployed in Uganda, Tanzania, and Zambia between 2007 and 2011 have been inverted, together with relative arrival time residuals from earthquakes recorded by previous deployments, for a tomographic image of mantle wave speed variations extending to a depth of 1200 km beneath eastern Africa. The image shows a low-wave speed anomaly (LWA) well developed at shallow depths (100-200 km) beneath the Eastern and Western branches of the Cenozoic East African rift system and northwestern Zambia, and a fast wave speed anomaly at depths ≤ 350 km beneath the central and northern parts of the East African Plateau and the eastern and central parts of Zambia. At depths ≥350 km the LWA is most prominent under the central and southern parts of the East African Plateau and dips to the southwest beneath northern Zambia, extending to a depth of at least 900 km. The amplitude of the LWA is consistent with a ˜150-300 K thermal perturbation, and its depth extent indicates that the African superplume, originally identified as a lower mantle anomaly, is likely a whole mantle structure. A superplume extending from the core-mantle boundary to the surface implies an origin for the Cenozoic extension, volcanism, and plateau uplift in eastern Africa rooted in the dynamics of the lower mantle.

  9. Characterising East Antarctic Lithosphere and its Rift Systems using Gravity Inversion

    NASA Astrophysics Data System (ADS)

    Vaughan, Alan P. M.; Kusznir, Nick J.; Ferraccioli, Fausto; Leat, Phil T.; Jordan, Tom A. R. M.; Purucker, Michael E.; Golynsky, A. V. Sasha; Rogozhina, Irina

    2013-04-01

    Since the International Geophysical Year (1957), a view has prevailed that East Antarctica has a relatively homogeneous lithospheric structure, consisting of a craton-like mosaic of Precambrian terranes, stable since the Pan-African orogeny ~500 million years ago (e.g. Ferracioli et al. 2011). Recent recognition of a continental-scale rift system cutting the East Antarctic interior has crystallised an alternative view of much more recent geological activity with important implications. The newly defined East Antarctic Rift System (EARS) (Ferraccioli et al. 2011) appears to extend from at least the South Pole to the continental margin at the Lambert Rift, a distance of 2500 km. This is comparable in scale to the well-studied East African rift system. New analysis of RadarSat data by Golynsky & Golynsky (2009) indicates that further rift zones may form widely distributed extension zones within the continent. A pilot study (Vaughan et al. 2012), using a newly developed gravity inversion technique (Chappell & Kusznir 2008) with existing public domain satellite data, shows distinct crustal thickness provinces with overall high average thickness separated by thinner, possibly rifted, crust. Understanding the nature of crustal thickness in East Antarctica is critical because: 1) this is poorly known along the ocean-continent transition, but is necessary to improve the plate reconstruction fit between Antarctica, Australia and India in Gondwana, which will also better define how and when these continents separated; 2) lateral variation in crustal thickness can be used to test supercontinent reconstructions and assess the effects of crystalline basement architecture and mechanical properties on rifting; 3) rift zone trajectories through East Antarctica will define the geometry of zones of crustal and lithospheric thinning at plate-scale; 4) it is not clear why or when the crust of East Antarctica became so thick and elevated, but knowing this can be used to test models of

  10. The Cenozoic magmatism of East-Africa: Part I - Flood basalts and pulsed magmatism

    NASA Astrophysics Data System (ADS)

    Rooney, Tyrone O.

    2017-08-01

    Cenozoic magmatism in East Africa results from the interplay between lithospheric extension and material upwelling from the African Large Low Shear Velocity Province (LLSVP). The modern focusing of East African magmatism into oceanic spreading centers and continental rifts highlights the modern control of lithospheric thinning in magma generation processes, however the widespread, and volumetrically significant flood basalt events of the Eocene to Early Miocene suggest a significant role for material upwelling from the African LLSVP. The slow relative motion of the African plate during the Cenozoic has resulted in significant spatial overlap in lavas derived from different magmatic events. This complexity is being resolved with enhanced geochronological precision and a focus on the geochemical characteristics of the volcanic products. It is now apparent that there are three distinct pulses of basaltic volcanism, followed by either bimodal lavas or silicic volcanic products during this period: (A) Eocene Initial Phase from 45 to 34 Ma. This is a period of dominantly basaltic volcanism focused in Southern Ethiopia and Northern Kenya (Turkana). (B) Oligocene Traps phase from 33.9 to 27 Ma. This period coincides with a significant increase in the aerial extent of volcanism with broadly age equivalent 1 to 2 km thick sequences of dominantly basalt centered on the NW Ethiopian Plateau and Yemen, (C) Early Miocene resurgence phase from 26.9 to 22 Ma. This resurgence in basaltic volcanism is seen throughout the region at ca. 24-23 Ma, but is less volumetrically significant than the prior two basaltic pulses. With our developing understanding of the persistence of LLSVP anomalies within the mantle, I propose that the three basaltic pulses are ostensibly manifestations of the same plume-lithosphere interaction, requiring revision to the duration, magmatic extent, and magma volume of the African-Arabian Large Igneous Province.

  11. Analysis of the Junction of the East African Rift and the Cretaceous-Paleogene Rifts in Northern Kenya and Southern Ethiopia

    NASA Astrophysics Data System (ADS)

    Mariita, N. O.; Tadesse, K.; Keller, G. R.

    2003-12-01

    The East African rift (EAR) is a Tertiary-Miocene system that extends from the Middle East, through East Africa, to Mozambique in southern Africa. Much of the present information is from the Ethiopian and Kenyan parts of the rift. Several characteristics of the EAR such as rift-related volcanism, faulting and topographic relief being exposed make it attractive for studying continental rift processes. Structural complexities reflected in the geometries of grabens and half-grabens, the existence of transverse fault zones and accommodation zones, and the influence of pre-existing geologic structures have been documented. In particular, the EAR traverses the Anza graben and related structures near the Kenya/Ethiopian border. The Anza graben is one in a series of Cretaceous-Paleogene failed rifts that trend across Central Africa from Nigeria through Chad to Sudan and Kenya with an overall northwest-southeast trend. In spite of a number of recent studies, we do not understand the interaction of these two rift systems. In both Ethiopia and Kenya, the rift segments share some broad similarities in timing and are related in a geographic sense. For example, volcanism appears to have generally preceded or in some cases have been contemporaneous with major rift faulting. Although, these segments are distinct entities, each with its own tectonic and magmatic evolution, and they do connect in the region crossed by the Anza graben and related structures. In our present study, we are using a combination of recently collected seismic, gravity and remote sensing data to increase our understanding of these two segments of the EAR. We hope that by analysing the satellite data, the variety and differences in the volume of magmatic products extruded along in southern Ethiopia and northern Kenya will be identified. The geometry of structures (in particular, those causing the gravity axial high) will be modelled to study the impact of the older Anza graben structural trends with the

  12. Trading or coercion? Variation in male mating strategies between two communities of East African chimpanzees.

    PubMed

    Kaburu, Stefano S K; Newton-Fisher, Nicholas E

    2015-06-01

    Across taxa, males employ a variety of mating strategies, including sexual coercion and the provision, or trading, of resources. Biological market theory (BMT) predicts that trading of commodities for mating opportunities should exist only when males cannot monopolize access to females and/or obtain mating by force, in situations where power differentials between males are low; both coercion and trading have been reported for chimpanzees ( Pan troglodytes ). Here, we investigate whether the choice of strategy depends on the variation in male power differentials, using data from two wild communities of East African chimpanzees ( Pan troglodytes schweinfurthii ): the structurally despotic Sonso community (Budongo, Uganda) and the structurally egalitarian M-group (Mahale, Tanzania). We found evidence of sexual coercion by male Sonso chimpanzees, and of trading-of grooming for mating-by M-group males; females traded sex for neither meat nor protection from male aggression. Our results suggest that the despotism-egalitarian axis influences strategy choice: male chimpanzees appear to pursue sexual coercion when power differentials are large and trading when power differentials are small and coercion consequently ineffective. Our findings demonstrate that trading and coercive strategies are not restricted to particular chimpanzee subspecies; instead, their occurrence is consistent with BMT predictions. Our study raises interesting, and as yet unanswered, questions regarding female chimpanzees' willingness to trade sex for grooming, if doing so represents a compromise to their fundamentally promiscuous mating strategy. It highlights the importance of within-species cross-group comparisons and the need for further study of the relationship between mating strategy and dominance steepness.

  13. Land - Ocean Climate Linkages and the Human Evolution - New ICDP and IODP Drilling Initiatives in the East African Rift Valley and SW Indian Ocean

    NASA Astrophysics Data System (ADS)

    Zahn, R.; Feibel, C.; Co-Pis, Icdp/Iodp

    2009-04-01

    The past 5 Ma were marked by systematic shifts towards colder climates and concomitant reorganizations in ocean circulation and marine heat transports. Some of the changes involved plate-tectonic shifts such as the closure of the Panamanian Isthmus and restructuring of the Indonesian archipelago that affected inter-ocean communications and altered the world ocean circulation. These changes induced ocean-atmosphere feedbacks with consequences for climates globally and locally. Two new ICDP and IODP drilling initiatives target these developments from the perspectives of marine and terrestrial palaeoclimatology and the human evolution. The ICDP drilling initiative HSPDP ("Hominid Sites and Paleolakes Drilling Project"; ICDP ref. no. 10/07) targets lacustrine depocentres in Ethiopia (Hadar) and Kenya (West Turkana, Olorgesailie, Magadi) to retrieve sedimentary sequences close to the places and times where various species of hominins lived over currently available outcrop records. The records will provide a spatially resolved record of the East African environmental history in conjunction with climate variability at orbital (Milankovitch) and sub-orbital (ENSO decadal) time scales. HSPDP specifically aims at (1) compiling master chronologies for outcrops around each of the depocentres; (2) assessing which aspects of the paleoenvironmental records are a function of local origin (hydrology, hydrogeology) and which are linked with regional or larger-scale signals; (3) correlating broad-scale patterns of hominin phylogeny with the global beat of climate variability and (4) correlating regional shifts in the hominin fossil and archaeological record with more local patterns of paleoenvironmental change. Ultimately the aim is to test hypotheses that link physical and cultural adaptations in the course of the hominin evolution to local environmental change and variability. The IODP initiative SAFARI ("Southern African Climates, Agulhas Warm Water Transports and Retroflection

  14. Effect of Grazing on Plant Attributes and Hydrological Properties in the Sloping Lands of the East African Highlands

    NASA Astrophysics Data System (ADS)

    Taddese, Girma; Saleem, M. A. Mohamed; Astatke, Abyie; Ayaleneh, Wagnew

    2002-09-01

    Extending livestock grazing to the steep slopes has led to unstable grazing systems in the East African Highlands, and new solutions and approaches are needed to ameliorate the current situation. This work was aimed at studying the effect of livestock grazing on plant attributes and hydrological properties. The study was conducted from 1996 to 2000 at the International Livestock Research Institute at Debre Ziet Research Station. Two sites were selected: one at 0-4% slope, and the other at 4-8% slope. The treatments were: (1) no grazing (control); (2) light grazing, 0.6 animal unit months per hectare (aum/ha); (3) moderate grazing, 1.8 aum/ha; (4) heavy grazing, 3.0 aum/ha; (5) very heavy grazing, 4.2 aum/ha; (6) initially plowed and continuously very heavily grazed, 4.2 aum/ha. The result showed that species richness, infiltration rate, bare ground, and soil loss significantly varied with grazing pressure. Species richness was higher in grazed plots compared to nongrazed plots. Biomass yield improved on heavily grazed plots as cow dung accumulated over years. Cynodon dactylon plant species persisted with livestock grazing pressure in both sites. Infiltration rate improved and soil erosion declined in all treatments after the first year.

  15. Terrestrial heat flow in east and southern Africa

    NASA Astrophysics Data System (ADS)

    Nyblade, Andrew A.; Pollack, Henry N.; Jones, D. L.; Podmore, Francis; Mushayandebvu, Martin

    1990-10-01

    We report 26 new heat flow and 13 radiogenic heat production measurements from Zimbabwe, Zambia and Tanzania, together with details and some revisions of 18 previous heat flow measurements by other investigators from Kenya and Tanzania. These measurements come from Archean cratons, Proterozoic mobile belts, and Mesozoic and Cenozoic rifts. Heat flow data from eight new sites in the Archean Zimbabwe Craton are consistent with previous measurements in the Archean Kaapvaal-Zimbabwe Craton and Limpopo Belt (Kalahari Craton) and do not change the mean heat flow of 47±2 mW m-2 (standard error of the mean) in the Kalahari Craton based on 53 previous measurements. Eight new sites in the Archean Tanzania Craton give a mean heat flow of 34±4 mW m-2. The mean heat flow from nine sites in the Proterozoic Mozambique Belt to the east of the Tanzania Craton in Kenya and Tanzania is 47±4 mW m-2. Twelve measurements in the Mesozoic rifted continental margin in east Africa give a mean heat flow of 68±4 mW m-2; four measurements in the Mesozoic Luangwa and Zambezi Rifts range from 44 to 110 mW m-2 with a mean of 76±14 mW m-2. In comparing heat flow in east and southern Africa, we observe a common heat flow pattern of increasing heat flow away from the centers of the Archean cratons. This pattern suggests a fundamental difference in lithospheric thermal structure between the Archean cratons and the Proterozoic and early Paleozoic mobile belts which surround them. Superimposed on this common pattern are two regional variations in heat flow. Heat flow in the Tanzania Craton is lower by about 13 mW m-2 than in the Kalahari Craton, and in the Mozambique Belt in east Africa heat flow is somewhat lower than in the southern African mobile belts at similar distances from the Archean cratonic margin. The two regional variations can be explained in several ways, none of which can as yet be elevated to a preferred status: (1) by variations in crustal heat production, (2) by thin

  16. Effect of Aerobic Training on Glucose Control and Blood Pressure in T2DDM East African Males

    PubMed Central

    Prista, Antonio; Ranadive, Sushant M.; Damasceno, Albertino; Caupers, Paula; Kanaley, Jill A.; Fernhall, Bo

    2014-01-01

    Background. Exercise training intervention is underused in the management of type 2 diabetes mellitus in East Africa. Methods. 41 physically-active males with type 2 diabetes mellitus living in Mozambique were recruited and randomly assigned to 12 weeks of supervised exercise of low intensity exercise (LEX), vigorous intensity exercise (VEX), or to a control group (CON). Since there were no differences for any outcome variables between the exercise groups, VEX and LEX were combined into one exercise group (EX). Results. Age and baseline body weight were similar between EX and CON. Plasma glucose at 120 min following glucose load (Glu 120) was significantly reduced in the EX group after training (Glu 120 : 17.3 mmol/L to 15.0 mmol/L, P < 0.05), whereas Glu 120 remained unchanged in the CON (Glu 120 : 16.6 mmol/L to 18.7 mmol/L). After controlling for baseline blood pressure (BP), posttraining systolic BP and diastolic BP were lower in the EX group than in the CON group (EX: 129/77 mm Hg, CON: 152/83 mm Hg, P < 0.05). Conclusion. Adding exercise to already active African men with type 2 diabetes improved glucose control and BP levels without concomitant changes in weight. PMID:24729886

  17. Famine Early Warning Systems Network (FEWS NET) Contributions to Strengthening Resilience and Sustainability for the East African Community

    NASA Astrophysics Data System (ADS)

    Budde, M. E.; Galu, G.; Funk, C. C.; Verdin, J. P.; Rowland, J.

    2014-12-01

    The Planning for Resilience in East Africa through Policy, Adaptation, Research, and Economic Development (PREPARED) is a multi-organizational project aimed at mainstreaming climate-resilient development planning and program implementation into the East African Community (EAC). The Famine Early Warning Systems Network (FEWS NET) has partnered with the PREPARED project to address three key development challenges for the EAC; 1) increasing resiliency to climate change, 2) managing trans-boundary freshwater biodiversity and conservation and 3) improving access to drinking water supply and sanitation services. USGS FEWS NET has been instrumental in the development of gridded climate data sets that are the fundamental building blocks for climate change adaptation studies in the region. Tools such as the Geospatial Climate Tool (GeoCLIM) have been developed to interpolate time-series grids of precipitation and temperature values from station observations and associated satellite imagery, elevation data, and other spatially continuous fields. The GeoCLIM tool also allows the identification of anomalies and assessments of both their frequency of occurrence and directional trends. A major effort has been put forth to build the capacities of local and regional institutions to use GeoCLIM to integrate their station data (which is not typically available to the public) into improved national and regional gridded climate data sets. In addition to the improvements and capacity building activities related to geospatial analysis tools, FEWS NET will assist in two other areas; 1) downscaling of climate change scenarios and 2) vulnerability impact assessments. FEWS NET will provide expertise in statistical downscaling of Global Climate Model output fields and work with regional institutions to assess results of other downscaling methods. Completion of a vulnerability impact assessment (VIA) involves the examination of sectoral consequences in identified climate "hot spots". FEWS NET

  18. Dietary trends in the Middle East and North Africa: an ecological study (1961 to 2007).

    PubMed

    Golzarand, Mahdieh; Mirmiran, Parvin; Jessri, Mahsa; Toolabi, Karamollah; Mojarrad, Mehdi; Azizi, Fereidoun

    2012-10-01

    Middle Eastern and North African countries are undergoing nutrition transition, a transition which is associated with an increased burden of non-communicable diseases. This necessitates the evaluation of dietary patterns in these regions. The present study aimed to assess changes in dietary patterns in Middle Eastern and North African countries between 1961 and 2007. Availability of energy and fifteen main food items during 1961-2007 was examined using FAO food balance sheets from the FAOSTAT database. Fifteen countries including nine in the Middle East and six in North Africa were selected and the average availability of total energy and different food items in these regions were compared. Over the 47 years studied, energy and food availability (apart from animal fats and alcoholic beverages) has increased in the Middle East and North Africa. In both regions the proportion of energy derived from meat and vegetable oils has increased significantly while that from cereals decreased significantly. In addition, the proportion of energy from milk and dairy products and vegetables has shown an ascending trend in North Africa while the proportion of energy from fruits has shown a descending trend in the Middle East. The study results reveal an unfavourable trend towards a Westernized diet in the Middle East and, to a certain extent, in North Africa. Tailored nutritional education encouraging healthy eating for prevention of the burden of chronic diseases in these countries seems essential.

  19. Climate warming reduces fish production and benthic habitat in Lake Tanganyika, one of the most biodiverse freshwater ecosystems

    PubMed Central

    Gergurich, Elizabeth L.; Kraemer, Benjamin M.; McGlue, Michael M.; McIntyre, Peter B.; Russell, James M.; Simmons, Jack D.; Swarzenski, Peter W.

    2016-01-01

    Warming climates are rapidly transforming lake ecosystems worldwide, but the breadth of changes in tropical lakes is poorly documented. Sustainable management of freshwater fisheries and biodiversity requires accounting for historical and ongoing stressors such as climate change and harvest intensity. This is problematic in tropical Africa, where records of ecosystem change are limited and local populations rely heavily on lakes for nutrition. Here, using a ∼1,500-y paleoecological record, we show that declines in fishery species and endemic molluscs began well before commercial fishing in Lake Tanganyika, Africa’s deepest and oldest lake. Paleoclimate and instrumental records demonstrate sustained warming in this lake during the last ∼150 y, which affects biota by strengthening and shallowing stratification of the water column. Reductions in lake mixing have depressed algal production and shrunk the oxygenated benthic habitat by 38% in our study areas, yielding fish and mollusc declines. Late-20th century fish fossil abundances at two of three sites were lower than at any other time in the last millennium and fell in concert with reduced diatom abundance and warming water. A negative correlation between lake temperature and fish and mollusc fossils over the last ∼500 y indicates that climate warming and intensifying stratification have almost certainly reduced potential fishery production, helping to explain ongoing declines in fish catches. Long-term declines of both benthic and pelagic species underscore the urgency of strategic efforts to sustain Lake Tanganyika’s extraordinary biodiversity and ecosystem services. PMID:27503877

  20. Kinematics and dynamics of Nubia-Somalia divergence along the East African rift

    NASA Astrophysics Data System (ADS)

    Stamps, Dorothy Sarah

    Continental rifting is fundamental to the theory of plate tectonics, yet the force balance driving Earth's largest continental rift system, the East African Rift (EAR), remains debated. The EAR actively diverges the Nubian and Somalian plates spanning ˜5000 km N-S from the Red Sea to the Southwest Indian Ridge and ˜3000 km NW-SE from eastern Congo to eastern Madagascar. Previous studies suggest either lithospheric buoyancy forces or horizontal tractions dominate the force balance acting to rupture East Africa. In this work, we investigate the large-scale dynamics of Nubia-Somalia divergence along the EAR driving present-day kinematics. Because Africa is largely surrounded by spreading ridges, we assume plate-plate interactions are minimal and that the major driving forces are gradients in gravitational potential energy (GPE), which includes the effect of vertical mantle tractions, and horizontal basal tractions arising from viscous coupling to horizontal mantle flow. We quantify a continuous strain rate and velocity field based on kinematic models, an updated GPS velocity solution, and the style of earthquake focal mechanisms, which we use as an observational constraint on surface deformation. We solve the 3D force balance equations and calculate vertically averaged deviatoric stress for a 100 km thick lithosphere constrained by the CRUST2.0 crustal density and thickness model. By comparing vertically integrated deviatoric stress with integrated lithospheric strength we demonstrate forces arising from gradients in gravitational potential energy are insufficient to rupture strong lithosphere, hence weakening mechanisms are required to initiate continental rupture. The next step involves inverting for a stress field boundary condition that is the long-wavelength minimum energy deviatoric stress field required to best-fit the style of our continuous strain rate field in addition to deviatoric stress from gradients in GPE. We infer the stress field boundary condition

  1. Comparative support for the expensive tissue hypothesis: Big brains are correlated with smaller gut and greater parental investment in Lake Tanganyika cichlids.

    PubMed

    Tsuboi, Masahito; Husby, Arild; Kotrschal, Alexander; Hayward, Alexander; Buechel, Séverine D; Zidar, Josefina; Løvlie, Hanne; Kolm, Niclas

    2015-01-01

    The brain is one of the most energetically expensive organs in the vertebrate body. Consequently, the energetic requirements of encephalization are suggested to impose considerable constraints on brain size evolution. Three main hypotheses concerning how energetic constraints might affect brain evolution predict covariation between brain investment and (1) investment into other costly tissues, (2) overall metabolic rate, and (3) reproductive investment. To date, these hypotheses have mainly been tested in homeothermic animals and the existing data are inconclusive. However, there are good reasons to believe that energetic limitations might play a role in large-scale patterns of brain size evolution also in ectothermic vertebrates. Here, we test these hypotheses in a group of ectothermic vertebrates, the Lake Tanganyika cichlid fishes. After controlling for the effect of shared ancestry and confounding ecological variables, we find a negative association between brain size and gut size. Furthermore, we find that the evolution of a larger brain is accompanied by increased reproductive investment into egg size and parental care. Our results indicate that the energetic costs of encephalization may be an important general factor involved in the evolution of brain size also in ectothermic vertebrates. © 2014 The Author(s). Evolution © 2014 The Society for the Study of Evolution.

  2. Rifting the continental lithosphere: case studies of the lithosphere-asthenosphere system in rifted settings across the western U.S. and in the southern East African Rift

    NASA Astrophysics Data System (ADS)

    Hopper, E.; Gaherty, J. B.; Shillington, D. J.

    2016-12-01

    Continental extension comes in many guises, often described in terms of two endmembers. Narrow rifting is typified by a rift valley narrower than lithospheric thickness (50-100 km), presumed to result in steep lateral changes in crustal and lithospheric topography; wide rifting by a broad zone (<1000 km) of normal faulting associated with much smaller topographic gradients. A type example for the former is the East African Rift Valley; for the latter, the Basin and Range in the western U.S.A. An important control on rift development is the state of the lithosphere: for example, its strength and thickness. We analyse common conversion point stacked Sp converted wave images of the lithosphere beneath rift systems in the contiguous U.S., both the wide Basin and Range, and narrow rift systems such as the Rio Grande Rift and Salton Trough. We use Sp waves recorded by EarthScope's Transportable Array and other available permanent and temporary broadband stations. Beneath the Basin and Range, we observe a very strong, shallow velocity decrease (the lithosphere-asthenosphere boundary, or LAB) that is relatively uniform over 100s of km. The strength of this feature indicates melt has ponded at this transition. We have not observed a clear relationship between lithospheric thickness beneath the Basin and Range, and total degree of extension, current extension rate, or age since surface volcanism. Beneath narrow rifts in the western U.S., however, more localised thinning of the lithosphere has been observed. We also compare these observations with seismic images of the Malawi Rift, at the southern end of the Western Branch of the East African Rift System, using broadband data acquired as part of the Study of Extension and MaGmatism in Malawi aNd Tanzania (SEGMeNT) experiment. The Malawi Rift is extending slowly in a magma-poor region of relatively strong lithosphere. We constrain the pattern of plate-scale extension by observations of crustal thinning, and image complex

  3. Rifting the continental lithosphere: case studies of the lithosphere-asthenosphere system in rifted settings across the western U.S. and in the southern East African Rift

    NASA Astrophysics Data System (ADS)

    Hopper, E.; Gaherty, J. B.; Shillington, D. J.

    2017-12-01

    Continental extension comes in many guises, often described in terms of two endmembers. Narrow rifting is typified by a rift valley narrower than lithospheric thickness (50-100 km), presumed to result in steep lateral changes in crustal and lithospheric topography; wide rifting by a broad zone (<1000 km) of normal faulting associated with much smaller topographic gradients. A type example for the former is the East African Rift Valley; for the latter, the Basin and Range in the western U.S.A. An important control on rift development is the state of the lithosphere: for example, its strength and thickness. We analyse common conversion point stacked Sp converted wave images of the lithosphere beneath rift systems in the contiguous U.S., both the wide Basin and Range, and narrow rift systems such as the Rio Grande Rift and Salton Trough. We use Sp waves recorded by EarthScope's Transportable Array and other available permanent and temporary broadband stations. Beneath the Basin and Range, we observe a very strong, shallow velocity decrease (the lithosphere-asthenosphere boundary, or LAB) that is relatively uniform over 100s of km. The strength of this feature indicates melt has ponded at this transition. We have not observed a clear relationship between lithospheric thickness beneath the Basin and Range, and total degree of extension, current extension rate, or age since surface volcanism. Beneath narrow rifts in the western U.S., however, more localised thinning of the lithosphere has been observed. We also compare these observations with seismic images of the Malawi Rift, at the southern end of the Western Branch of the East African Rift System, using broadband data acquired as part of the Study of Extension and MaGmatism in Malawi aNd Tanzania (SEGMeNT) experiment. The Malawi Rift is extending slowly in a magma-poor region of relatively strong lithosphere. We constrain the pattern of plate-scale extension by observations of crustal thinning, and image complex

  4. Crustal and mantle structure and anisotropy beneath the incipient segments of the East African Rift System: Preliminary results from the ongoing SAFARI

    NASA Astrophysics Data System (ADS)

    Yu, Y.; Reed, C. A.; Gao, S. S.; Liu, K. H.; Massinque, B.; Mdala, H. S.; moidaki, M.; Mutamina, D. M.; Atekwana, E. A.; Ingate, S. F.; Reusch, A.; Barstow, N.

    2013-12-01

    Despite the vast wealth of research conducted toward understanding processes associated with continental rifting, the extent of our knowledge is derived primarily from studies focused on mature rift systems, such as the well-developed portions of the East African Rift System (EARS) north of Lake Malawi. To explore the dynamics of early rift evolution, the SAFARI (Seismic Arrays for African Rift Initiation) team deployed 50 PASSCAL broadband seismic stations across the Malawi, Luangwa, and Okavango rifts of the EARS during the summer of 2012. The cumulative length of the profiles is about 2500 km and the planned recording duration is 2 years. Here we present the preliminary results of systematic analyses of data obtained from the first year of acquisition for all 50 stations. A total of 446 high-quality shear-wave splitting measurements using PKS, SKKS, and SKS phases from 84 teleseismic events were used to constrain fast polarization directions and splitting times throughout the region. The Malawi and Okavango rifts are characterized by mostly NE trending fast directions with a mean splitting time of about 1 s. The fast directions on the west side of the Luangwa Rift Zone are parallel to the rift valley, and those on the east side are more N-S oriented. Stacking of approximately 1900 radial receiver functions reveals significant spatial variations of both crustal thickness and the ratio of crustal P and S wave velocities, as well as the thickness of the mantle transition zone. Stations situated within the Malawi rift demonstrate a southward increase in observed crustal thickness, which is consistent with the hypothesis that the Malawi rift originated at the northern end of the rift system and propagated southward. Both the Okavango and Luangwa rifts are associated with thinned crust and increased Vp/Vs, although additional data is required at some stations to enhance the reliability of the observations. Teleseismic P-wave travel-time residuals show a delay of about

  5. Brief communication: Drought likelihood for East Africa

    NASA Astrophysics Data System (ADS)

    Yang, Hui; Huntingford, Chris

    2018-02-01

    The East Africa drought in autumn of year 2016 caused malnutrition, illness and death. Close to 16 million people across Somalia, Ethiopia and Kenya needed food, water and medical assistance. Many factors influence drought stress and response. However, inevitably the following question is asked: are elevated greenhouse gas concentrations altering extreme rainfall deficit frequency? We investigate this with general circulation models (GCMs). After GCM bias correction to match the climatological mean of the CHIRPS data-based rainfall product, climate models project small decreases in probability of drought with the same (or worse) severity as 2016 ASO (August to October) East African event. This is by the end of the 21st century compared to the probabilities for present day. However, when further adjusting the climatological variability of GCMs to also match CHIRPS data, by additionally bias-correcting for variance, then the probability of drought occurrence will increase slightly over the same period.

  6. A Developmental Assets Approach in East Africa: Can Swahili Measures Capture Adolescent Strengths and Supports?

    ERIC Educational Resources Information Center

    Drescher, Christopher F.; Johnson, Laura R.; Kurz, A. Solomon; Scales, Peter C.; Kiliho, Ray P.

    2018-01-01

    Background: Assets-based approaches are well-suited to youth living in majority world contexts, such as East Africa. However, positive psychology research with African adolescents is rare. One hindering factor is the lack of translated measures for conducting research. Objective: This study builds capacity for positive youth development research…

  7. A spring forward for hominin evolution in East Africa.

    PubMed

    Cuthbert, Mark O; Ashley, Gail M

    2014-01-01

    Groundwater is essential to modern human survival during drought periods. There is also growing geological evidence of springs associated with stone tools and hominin fossils in the East African Rift System (EARS) during a critical period for hominin evolution (from 1.8 Ma). However it is not known how vulnerable these springs may have been to climate variability and whether groundwater availability may have played a part in human evolution. Recent interdisciplinary research at Olduvai Gorge, Tanzania, has documented climate fluctuations attributable to astronomic forcing and the presence of paleosprings directly associated with archaeological sites. Using palaeogeological reconstruction and groundwater modelling of the Olduvai Gorge paleo-catchment, we show how spring discharge was likely linked to East African climate variability of annual to Milankovitch cycle timescales. Under decadal to centennial timescales, spring flow would have been relatively invariant providing good water resource resilience through long droughts. For multi-millennial periods, modelled spring flows lag groundwater recharge by 100 s to 1000 years. The lag creates long buffer periods allowing hominins to adapt to new habitats as potable surface water from rivers or lakes became increasingly scarce. Localised groundwater systems are likely to have been widespread within the EARS providing refugia and intense competition during dry periods, thus being an important factor in natural selection and evolution, as well as a vital resource during hominin dispersal within and out of Africa.

  8. Mosaic maternal ancestry in the Great Lakes region of East Africa.

    PubMed

    Gomes, Verónica; Pala, Maria; Salas, Antonio; Álvarez-Iglesias, Vanesa; Amorim, António; Gómez-Carballa, Alberto; Carracedo, Ángel; Clarke, Douglas J; Hill, Catherine; Mormina, Maru; Shaw, Marie-Anne; Dunne, David W; Pereira, Rui; Pereira, Vânia; Prata, Maria João; Sánchez-Diz, Paula; Rito, Teresa; Soares, Pedro; Gusmão, Leonor; Richards, Martin B

    2015-09-01

    The Great Lakes lie within a region of East Africa with very high human genetic diversity, home of many ethno-linguistic groups usually assumed to be the product of a small number of major dispersals. However, our knowledge of these dispersals relies primarily on the inferences of historical, linguistics and oral traditions, with attempts to match up the archaeological evidence where possible. This is an obvious area to which archaeogenetics can contribute, yet Uganda, at the heart of these developments, has not been studied for mitochondrial DNA (mtDNA) variation. Here, we compare mtDNA lineages at this putative genetic crossroads across 409 representatives of the major language groups: Bantu speakers and Eastern and Western Nilotic speakers. We show that Uganda harbours one of the highest mtDNA diversities within and between linguistic groups, with the various groups significantly differentiated from each other. Despite an inferred linguistic origin in South Sudan, the data from the two Nilotic-speaking groups point to a much more complex history, involving not only possible dispersals from Sudan and the Horn but also large-scale assimilation of autochthonous lineages within East Africa and even Uganda itself. The Eastern Nilotic group also carries signals characteristic of West-Central Africa, primarily due to Bantu influence, whereas a much stronger signal in the Western Nilotic group suggests direct West-Central African ancestry. Bantu speakers share lineages with both Nilotic groups, and also harbour East African lineages not found in Western Nilotic speakers, likely due to assimilating indigenous populations since arriving in the region ~3000 years ago.

  9. Mantle transition zone structure beneath Tanzania, east Africa

    NASA Astrophysics Data System (ADS)

    Owens, Thomas J.; Nyblade, Andrew A.; Gurrola, Harold; Langston, Charles A.

    2000-03-01

    We apply a three-dimensional stacking method to receiver functions from the Tanzania Broadband Seismic Experiment to determine relative variations in the thickness of the mantle transition zone beneath Tanzania. The transition zone under the Eastern rift is 30-40 km thinner than under areas of the Tanzania Craton in the interior of the East African Plateau unaffected by rift faulting. The region of transition zone thinning under the Eastern rift is several hundred kilometers wide and coincides with a 2-3% reduction in S wave velocities. The thinning of the transition zone, as well as the reduction in S wave velocities, can be attributed to a 200-300°K increase in temperature. This thermal anomaly at >400 km depth beneath the Eastern rift cannot be easily explained by passive rifting and but is consistent with a plume origin for the Cenozoic rifting, volcanism and plateau uplift in East Africa.

  10. Trend in proportions of missed children during polio supplementary immunization activities in the African Region: evidence from independent monitoring data 2010-2012.

    PubMed

    Okeibunor, Joseph; Gasasira, Alex; Mihigo, Richard; Salla, Mbaye; Poy, Alain; Orkeh, Godwin; Shaba, Keith; Nshimirimana, Deo

    2014-02-19

    This is a comparative analysis of independent monitoring data collected between 2010 and 2012, following the implementation of supplementary immunization activities (SIAs) in countries in the three sub regional blocs of World Health Organization in the African Region. The sub regional blocs are Central Africa, West Africa, East and Southern Africa. In addition to the support for SIAs, the Central and West African blocs, threatened with importation and re-establishment of polio transmission received intensive coordination through weekly teleconferences. The later, East and Southern African bloc with low polio threats was not engaged in the intensive coordination through teleconferences. The key indicator of the success of SIAs is the proportion of children missed during SIAs. The results showed that generally there was a decrease in the proportion of children missed during SIAs in the region, from 7.94% in 2010 to 5.95% in 2012. However, the decrease was mainly in the Central and West African blocs. The East and Southern African bloc had countries with as much as 25% missed children. In West Africa and Central Africa, where more coordinated SIAs were conducted, there were progressive and consistent drops, from close to 20-10% at the maximum. At the country and local levels, steps were undertaken to ameliorate situation of low immunization uptake. Wherever an area is observed to have low coverage, local investigations were conducted to understand reasons for low coverage, plans to improve coverage are made and implemented in a coordinated manner. Lessons learned from close monitoring of polio eradication SIAs are will be applied to other campaigns being conducted in the African Region to accelerate control of other vaccine preventable diseases including cerebrospinal meningitis A, measles and yellow fever. Copyright © 2013 Elsevier Ltd. All rights reserved.

  11. East coast fever caused by Theileria parva is characterized by macrophage activation associated with vasculitis and respiratory failure

    USDA-ARS?s Scientific Manuscript database

    Respiratory failure and death in East Coast Fever (ECF), a clinical syndrome of African cattle caused by the apicomplexan parasite Theileria parva, has historically been attributed to pulmonary infiltration by infected lymphocytes. However, immunohistochemical staining of tissue from T. parva infect...

  12. The April 2017 M6.7 Botswana Earthquake: Implications for African Intraplate Seismicity.

    NASA Astrophysics Data System (ADS)

    Gardonio, B.; Calais, E.; Jolivet, R.

    2017-12-01

    The last decades have seen a rapidly increasing number of studies of interplate seismicity, revealing for instance the fundamental relationship between seismic and aseismic slip along plate boundary faults. To the contrary, intraplate earthquakes, occurring far from plate boundaries are still misunderstood and by far less studied. Key questions are the mechanisms through which elastic strain builds up and is released in the seismogenic crust in such contexts, in the absence of (yet) measurable intraplate strain rates. The April 2017 M6.7 Botswana earthquake was a surprise in many ways. This is the largest recorded event that struck this ordinarily seismically quiet region, West to the East-African Rift system where most of the usual southern seismicity occurs. It may also be the largest intraplate event recorded since the 1988 Tennant Creek earthquake in central Australia. No active structure can be mapped at the surface. Active extension related to the east African rifting may occur several hundreds of kilometers to the north-east with low rates of a few mm per year. Closer to the event, the Okavango delta, located at 20° of latitude and 23° of longitude is considered by some as an incipient rift with very low deformation rates, similar to a large part of the southern African continent. Interestingly, seismic activity in the area of the recent Botswana earthquake is more important than the world average intraplate activity, potentially due to rifting to the east and/or large stresses induced by lateral gradients in gravitational potential energy (this part of the world has an altitude of 1000 to 2000 m.). The aim of this study is to better constrain the tectonic setting and the dynamics of the Botswana earthquake area. To do so, we analyze a Sentinel 1 interferogram of the event to constrain the strike, dip, depth, magnitude and location of the earthquake. We also analyze continuous teleseismic signals during two months centered on the mainshock using a template

  13. Real-Time Analysis of African Political Violence, December 2012

    DTIC Science & Technology

    2012-12-01

    continuity on the conti- nent. The October issue (available online at acled- data.com) focused on West African country cases, with a special focus...jihad a membership, jihad is open to everyone who is willing to fight.’ (quoted in Garowe Online , 1 April 2012). In addition to organisational...communities, particularly in the North-East have done little except potentially radicalise an already marginalised population and leave them sus- ceptible to

  14. Mapping of Mycobacterium tuberculosis Complex Genetic Diversity Profiles in Tanzania and Other African Countries

    PubMed Central

    Mbugi, Erasto V.; Katale, Bugwesa Z.; Streicher, Elizabeth M.; Keyyu, Julius D.; Kendall, Sharon L.; Dockrell, Hazel M.; Michel, Anita L.; Rweyemamu, Mark M.; Warren, Robin M.; Matee, Mecky I.; van Helden, Paul D.; Couvin, David; Rastogi, Nalin

    2016-01-01

    The aim of this study was to assess and characterize Mycobacterium tuberculosis complex (MTBC) genotypic diversity in Tanzania, as well as in neighbouring East and other several African countries. We used spoligotyping to identify a total of 293 M. tuberculosis clinical isolates (one isolate per patient) collected in the Bunda, Dar es Salaam, Ngorongoro and Serengeti areas in Tanzania. The results were compared with results in the SITVIT2 international database of the Pasteur Institute of Guadeloupe. Genotyping and phylogeographical analyses highlighted the predominance of the CAS, T, EAI, and LAM MTBC lineages in Tanzania. The three most frequent Spoligotype International Types (SITs) were: SIT21/CAS1-Kili (n = 76; 25.94%), SIT59/LAM11-ZWE (n = 22; 7.51%), and SIT126/EAI5 tentatively reclassified as EAI3-TZA (n = 18; 6.14%). Furthermore, three SITs were newly created in this study (SIT4056/EAI5 n = 2, SIT4057/T1 n = 1, and SIT4058/EAI5 n = 1). We noted that the East-African-Indian (EAI) lineage was more predominant in Bunda, the Manu lineage was more common among strains isolated in Ngorongoro, and the Central-Asian (CAS) lineage was more predominant in Dar es Salaam (p-value<0.0001). No statistically significant differences were noted when comparing HIV status of patients vs. major lineages (p-value = 0.103). However, when grouping lineages as Principal Genetic Groups (PGG), we noticed that PGG2/3 group (Haarlem, LAM, S, T, and X) was more associated with HIV-positive patients as compared to PGG1 group (Beijing, CAS, EAI, and Manu) (p-value = 0.03). This study provided mapping of MTBC genetic diversity in Tanzania (containing information on isolates from different cities) and neighbouring East African and other several African countries highlighting differences as regards to MTBC genotypic distribution between Tanzania and other African countries. This work also allowed underlining of spoligotyping patterns tentatively grouped within the newly designated EAI3-TZA

  15. Climatology of the African Easterly Jet and Subtropical Highs over North Africa and Arabian Peninsula and a Numerical Case Study of an Intense African Easterly Wave

    NASA Astrophysics Data System (ADS)

    Spinks, James D.

    North African climate is analyzed between 1979 and 2010 with an emphasis on August using the European Center for Medium Range Weather Forecast (ECMWF) global dataset to investigate the effects of the subtropical anticyclones over North Africa and the Arabian Peninsula on the Africa easterly jet (AEJ). It was found that the AEJ encloses a core with a local wind maximum (LWM) in both West and East Africa, in which the west LWM core has a higher zonal wind speed. The strength of both cores is distinctly different by way of thermal wind balance. The variability of these synoptic weather features is higher in East Africa. The most noticeable variability of intensity occurred with easterly waves. Maintenance of easterly waves from the Arabian Peninsula into East Africa is dependent on strong zonal gradients from the AEJ. These zonal gradients were induced by the strengthening of the subtropical highs and the presence of a westerly jet in Central Africa and south of the Arabian Peninsula. During positive ENSO periods, these systems are generally weaker while in negative periods are stronger. The origins of an intense African easterly wave (AEW) and mesoscale convective system (MCS) in August 2004 (A04) were traced back to the southern Arabian Peninsula, Asir Mountains, and Ethiopian Highlands using gridded satellite (GridSat) data, ERA-I, and the WRF-ARW model. A vorticity budget was developed to investigate the dynamics and mechanisms that contribute to the formation of A04's vorticity perturbation.

  16. Comparative sequence stratigraphy of low-latitude versus high-latitude lacustrine rift basins: Seismic data examples from the East African and Baikal rifts

    USGS Publications Warehouse

    Scholz, C.A.; Moore, T.C.; Hutchinson, D.R.; Golmshtok, A. Ja; Klitgord, Kim D.; Kurotchkin, A.G.

    1998-01-01

    Lakes Baikal, Malawi and Tanganyika are the world's three largest rift valley lakes and are the classic modem examples of lacustrine rift basins. All the rift lakes are segmented into half-graben basins, and seismic reflection datasets reveal how this segmentation controls the filling of the rift basins through time. In the early stages of rifting, basins are fed primarily by flexural margin and axial margin drainage systems. At the climax of syn-rift sedimentation, however, when the basins are deeply subsided, almost all the margins are walled off by rift shoulder uplifts, and sediment flux into the basins is concentrated at accommodation zone and axial margin river deltas. Flexural margin unconformities are commonplace in the tropical lakes but less so in high-latitude Lake Baikal. Lake levels are extremely dynamic in the tropical lakes and in low-latitude systems in general because of the predominance of evaporation in the hydrologic cycle in those systems. Evaporation is minimized in relation to inflow in the high-latitude Lake Baikal and in most high-latitude systems, and consequently, major sequence boundaries tend to be tectonically controlled in that type of system. The acoustic stratigraphies of the tropical lakes are dominated by high-frequency and high-amplitude lake level shifts, whereas in high-latitude Lake Baikal, stratigraphic cycles are dominated by tectonism and sediment-supply variations.

  17. Prevalence and Severity of Oral Diseases in the Africa and Middle East Region.

    PubMed

    Abid, A; Maatouk, F; Berrezouga, L; Azodo, C; Uti, O; El-Shamy, H; Oginni, A

    2015-07-01

    This review aims to determine the prevalence and severity of oral health diseases in the Africa and Middle East region (AMER). The profile of oral diseases is not homogeneous across the AMER. There are large disparities between groups. Reliable data are scarce. The prevalence and severity of oral diseases appear to be increasing in the African region, as does associated morbidity. There are substantial differences in inequalities in oral health. Dental caries prevalence is less severe in most African countries than in developed countries, but the high rate of untreated caries reflects the limited resources available and difficulties of access and affordability to essential oral health care services. The prevalence of gingival inflammation is very high in all age groups in several African countries. The prevalence of maxillofacial trauma has increased in many countries, with a wide variation of the incidence and high prevalence of traumatic dental injuries in primary and permanent teeth. Orofacial clefts are among the most common birth defects. Annual incidence of oral cancer is estimated as 25 cases per 100,000 people in Africa. Noma is a major public health problem for the Middle East and North African (MENA) region. Data about human immunodeficiency virus/AIDS are limited, particularly in the MENA region. According to the World Health Organization Regional Committee for Africa report, some fundamental key basic knowledge gaps need to be underlined. They include inequalities in oral health, low priority for oral health, lack of adequate funding, inadequate dental student training, obstacles to medical and dental research, and poor databases. There are very few effective public prevention and oral health promotion programs in the AMER. Universal health coverage is not achievable without scientific research on the effectiveness of health promotion interventions. © International & American Associations for Dental Research 2015.

  18. Chapter 5: Policies on Free Primary and Secondary Education in East Africa--Retrospect and Prospect

    ERIC Educational Resources Information Center

    Oketch, Moses; Rolleston, Caine

    2007-01-01

    This article reviews the evolution of education policies in the East African region in a historical context. The focus is on the formulation of policies for access to primary and secondary education in Kenya, Uganda, and Tanzania since their independence in the 1960s. The three countries have common characteristics and historical backgrounds. For…

  19. Design and descriptive epidemiology of the Infectious Diseases of East African Livestock (IDEAL) project, a longitudinal calf cohort study in western Kenya

    PubMed Central

    2013-01-01

    Background There is a widely recognised lack of baseline epidemiological data on the dynamics and impacts of infectious cattle diseases in east Africa. The Infectious Diseases of East African Livestock (IDEAL) project is an epidemiological study of cattle health in western Kenya with the aim of providing baseline epidemiological data, investigating the impact of different infections on key responses such as growth, mortality and morbidity, the additive and/or multiplicative effects of co-infections, and the influence of management and genetic factors. A longitudinal cohort study of newborn calves was conducted in western Kenya between 2007-2009. Calves were randomly selected from all those reported in a 2 stage clustered sampling strategy. Calves were recruited between 3 and 7 days old. A team of veterinarians and animal health assistants carried out 5-weekly, clinical and postmortem visits. Blood and tissue samples were collected in association with all visits and screened using a range of laboratory based diagnostic methods for over 100 different pathogens or infectious exposures. Results The study followed the 548 calves over the first 51 weeks of life or until death and when they were reported clinically ill. The cohort experienced a high all cause mortality rate of 16% with at least 13% of these due to infectious diseases. Only 307 (6%) of routine visits were classified as clinical episodes, with a further 216 reported by farmers. 54% of calves reached one year without a reported clinical episode. Mortality was mainly to east coast fever, haemonchosis, and heartwater. Over 50 pathogens were detected in this population with exposure to a further 6 viruses and bacteria. Conclusion The IDEAL study has demonstrated that it is possible to mount population based longitudinal animal studies. The results quantify for the first time in an animal population the high diversity of pathogens a population may have to deal with and the levels of co-infections with key

  20. Design and descriptive epidemiology of the Infectious Diseases of East African Livestock (IDEAL) project, a longitudinal calf cohort study in western Kenya.

    PubMed

    de Clare Bronsvoort, Barend Mark; Thumbi, Samuel Mwangi; Poole, Elizabeth Jane; Kiara, Henry; Auguet, Olga Tosas; Handel, Ian Graham; Jennings, Amy; Conradie, Ilana; Mbole-Kariuki, Mary Ndila; Toye, Philip G; Hanotte, Olivier; Coetzer, J A W; Woolhouse, Mark E J

    2013-08-30

    There is a widely recognised lack of baseline epidemiological data on the dynamics and impacts of infectious cattle diseases in east Africa. The Infectious Diseases of East African Livestock (IDEAL) project is an epidemiological study of cattle health in western Kenya with the aim of providing baseline epidemiological data, investigating the impact of different infections on key responses such as growth, mortality and morbidity, the additive and/or multiplicative effects of co-infections, and the influence of management and genetic factors.A longitudinal cohort study of newborn calves was conducted in western Kenya between 2007-2009. Calves were randomly selected from all those reported in a 2 stage clustered sampling strategy. Calves were recruited between 3 and 7 days old. A team of veterinarians and animal health assistants carried out 5-weekly, clinical and postmortem visits. Blood and tissue samples were collected in association with all visits and screened using a range of laboratory based diagnostic methods for over 100 different pathogens or infectious exposures. The study followed the 548 calves over the first 51 weeks of life or until death and when they were reported clinically ill. The cohort experienced a high all cause mortality rate of 16% with at least 13% of these due to infectious diseases. Only 307 (6%) of routine visits were classified as clinical episodes, with a further 216 reported by farmers. 54% of calves reached one year without a reported clinical episode. Mortality was mainly to east coast fever, haemonchosis, and heartwater. Over 50 pathogens were detected in this population with exposure to a further 6 viruses and bacteria. The IDEAL study has demonstrated that it is possible to mount population based longitudinal animal studies. The results quantify for the first time in an animal population the high diversity of pathogens a population may have to deal with and the levels of co-infections with key pathogens such as Theileria parva

  1. Oral Health Inequalities between Rural and Urban Populations of the African and Middle East Region.

    PubMed

    Ogunbodede, E O; Kida, I A; Madjapa, H S; Amedari, M; Ehizele, A; Mutave, R; Sodipo, B; Temilola, S; Okoye, L

    2015-07-01

    Although there have been major improvements in oral health, with remarkable advances in the prevention and management of oral diseases, globally, inequalities persist between urban and rural communities. These inequalities exist in the distribution of oral health services, accessibility, utilization, treatment outcomes, oral health knowledge and practices, health insurance coverage, oral health-related quality of life, and prevalence of oral diseases, among others. People living in rural areas are likely to be poorer, be less health literate, have more caries, have fewer teeth, have no health insurance coverage, and have less money to spend on dental care than persons living in urban areas. Rural areas are often associated with lower education levels, which in turn have been found to be related to lower levels of health literacy and poor use of health care services. These factors have an impact on oral health care, service delivery, and research. Hence, unmet dental care remains one of the most urgent health care needs in these communities. We highlight some of the conceptual issues relating to urban-rural inequalities in oral health, especially in the African and Middle East Region (AMER). Actions to reduce oral health inequalities and ameliorate rural-urban disparity are necessary both within the health sector and the wider policy environment. Recommended actions include population-specific oral health promotion programs, measures aimed at increasing access to oral health services in rural areas, integration of oral health into existing primary health care services, and support for research aimed at informing policy on the social determinants of health. Concerted efforts must be made by all stakeholders (governments, health care workforce, organizations, and communities) to reduce disparities and improve oral health outcomes in underserved populations. © International & American Associations for Dental Research 2015.

  2. International trends in health science librarianship part 14: East Africa (Kenya, Uganda, Rwanda).

    PubMed

    Gathoni, Nasra; Kamau, Nancy; Nannozi, Judith; Singirankabo, Marcel

    2015-06-01

    This is the 14th in a series of articles exploring international trends in health science librarianship in the 21st century. This is the second of four articles pertaining to different regions in the African continent. The present issue focuses on countries in East Africa (Kenya, Uganda and Rwanda). The next feature column will investigate trends in West Africa. JM. © 2015 Health Libraries Group.

  3. Comparative Transcriptomics in East African Cichlids Reveals Sex- and Species-Specific Expression and New Candidates for Sex Differentiation in Fishes

    PubMed Central

    Böhne, Astrid; Sengstag, Thierry; Salzburger, Walter

    2014-01-01

    Males and females of the same species differ largely in gene expression, which accounts for most of the morphological and physiological differences and sex-specific phenotypes. Here, we analyzed sex-specific gene expression in the brain and the gonads of cichlid fishes from Lake Tanganyika belonging to four different lineages, so-called tribes (Eretmodini, Ectodini, Haplochromini, and Lamprologini), using the outgroup Nile tilapia (Oreochromis niloticus) as reference. The comparison between male and female brains revealed few differences between the sexes, consistent in all investigated species. The gonads, on the other hand, showed a large fraction of differentially expressed transcripts with the majority of them showing the same direction of expression in all four species. All here-studied cichlids, especially the three investigated mouth-breeding species, showed a trend toward more male- than female-biased transcripts. Transcripts, which were female-biased in expression in all four species, were overrepresented on linkage group (LG)1 in the reference genome and common male-biased transcripts showed accumulation on LG23, the presumable sex chromosomes of the Nile tilapia. Sex-specific transcripts contained candidate genes for sex determination and differentiation in fishes, especially members of the transforming growth factor-β-superfamily and the Wnt-pathway and also prominent members of the sox-, dm-domain-, and high mobility group-box families. We further confirmed our previous finding on species/lineage-specific gene expression shifts in the sex steroid pathway, including synthesizing enzymes as the aromatase cyp19a1 and estrogen and androgen receptors. PMID:25364805

  4. Analysis of African Biomass Burning Over the South East Atlantic and its Interaction with Stratocumulus Clouds during ORACLES 2016/17

    NASA Astrophysics Data System (ADS)

    Freitag, S.; Howell, S. G.; Dobracki, A. N.; Smirnow, N.; Winchester, C.; Sedlacek, A. J., III; Podolske, J. R.; Noone, D.; McFarquhar, G. M.; Poellot, M.; Delene, D. J.

    2017-12-01

    During NASA ORACLES 2016/17 airborne missions, biomass burning (BB) advected from the African continent out over the South East Atlantic was intensively studied to better understand the role of BB aerosol in the regional radiation budget but also to discern its effect from natural aerosol on underlying Stratocumulus (Sc) clouds in the marine boundary layer (MBL). Because of its particle size and vast quantities BB aerosol once entrained into the MBL are highly effective as cloud condensation nuclei (CCN) impacting cloud microphysical properties and as such the Sc deck's radiative budget. This work identifies characteristic in-plume size resolved aerosol physiochemistry observed during the campaign with focus on absorbing aerosol measurements retrieved with a Single Particle Soot Photometer (SP2). The results are compared to MBL aerosol obervations and adjacent Sc cloud properties such as the cloud droplet number concentration. Additionally, size resolved aerosol physiochemistry and black carbon concentration were measured in the cloud occasionally using a Counterflow Virtual Impactor (CVI) inlet sampling exclusively cloud droplet residuals. Employing the CVI cloud droplets are inertially separated from the air and dried in-situ en-route to the aerosol instrumentation. This allows us to study natural and combustion-influenced aerosol that were actually activated as CCN in the Sc deck.

  5. Effects of parental care on resource allocation into immune defense and buccal microbiota in mouthbrooding cichlid fishes.

    PubMed

    Keller, Isabel S; Bayer, Till; Salzburger, Walter; Roth, Olivia

    2018-05-01

    Sexual dimorphism is founded upon a resource allocation trade-off between investments in reproduction versus other life-history traits including the immune system. In species with conventional parental care roles, theory predicts that males maximize their lifetime reproductive success by allocating resources toward sexual selection, while females achieve this through prolonging their lifespan. Here, we examine the interrelation between sexual dimorphism and parental care strategies in closely related maternal and biparental mouthbrooding cichlid fishes from East African Lake Tanganyika. We measured cellular immune parameters, examined the relative expression of 28 immune system and life history-related candidate genes and analyzed the microbiota composition in the buccal cavity. According to our predictions, maternal mouthbrooders are more sexually dimorphic in immune parameters than biparental mouthbrooders, which has possibly arisen through a differential resource allocation into parental care versus secondary sexual traits. Biparental mouthbrooders, on the other hand, which share the costs of parental care, feature an upregulated adaptive immune response and stronger antiviral properties, while their inflammation response is reduced. Overall, our results suggest a differential resource allocation trade-off between the two modes of parental investment. © 2018 The Author(s). Evolution © 2018 The Society for the Study of Evolution.

  6. Spatial analysis from remotely sensed observations of Congo basin of East African high Land to drain water using gravity for sustainable management of low laying Chad basin of Central Africa

    NASA Astrophysics Data System (ADS)

    Modu, B.; Herbert, B.

    2014-11-01

    The Chad basin which covers an area of about 2.4 million kilometer square is one of the largest drainage basins in Africa in the centre of Lake Chad .This basin was formed as a result of rifting and drifting episode, as such it has no outlet to the oceans or seas. It contains large area of desert from the north to the west. The basin covers in part seven countries such as Chad, Nigeria, Central African Republic, Cameroun, Niger, Sudan and Algeria. It is named Chad basin because 43.9% falls in Chad republic. Since its formation, the basin continues to experienced water shortage due to the activities of Dams combination, increase in irrigations and general reduction in rainfall. Chad basin needs an external water source for it to be function at sustainable level, hence needs for exploitation of higher east African river basin called Congo basin; which covers an area of 3.7 million square km lies in an astride the equator in west-central Africa-world second largest river basin after Amazon. The Congo River almost pans around republic of Congo, the democratic republic of Congo, the Central African Republic, western Zambia, northern Angola, part of Cameroun, and Tanzania. The remotely sensed imagery analysis and observation revealed that Congo basin is on the elevation of 275 to 460 meters and the Chad basin is on elevation of 240 meters. This implies that water can be drained from Congo basin via headrace down to the Chad basin for the water sustainability.

  7. Sex Education Targeting African Communities in the United Kingdom: Is It Fit for Purpose?

    ERIC Educational Resources Information Center

    Schmidt, E.; Olomo, F.; Corcoran, N.

    2012-01-01

    This study addresses the issue of the sexual needs of ethnic minority groups in the UK. Using focus group discussions with health service users and third-sector providers, it explores the perception of sex education by Black African communities living in a culturally diverse area in East London, focusing specifically on participants' understanding…

  8. Rayleigh Wave Phase Velocities Beneath the Central and Southern East African Rift System

    NASA Astrophysics Data System (ADS)

    Adams, A. N.; Miller, J. C.

    2017-12-01

    This study uses the Automated Generalized Seismological Data Function (AGSDF) method to develop a model of Rayleigh wave phase velocities in the central and southern portions of the East African Rift System (EARS). These phase velocity models at periods of 20-100s lend insight into the lithospheric structures associated with surficial rifting and volcanism, as well as basement structures that pre-date and affect the course of rifting. A large dataset of >700 earthquakes is used, comprised of Mw=6.0+ events that occurred between the years 1995 and 2016. These events were recorded by a composite array of 176 stations from twelve non-contemporaneous seismic networks, each with a distinctive array geometry and station spacing. Several first-order features are resolved in this phase velocity model, confirming findings from previous studies. (1) Low velocities are observed in isolated regions along the Western Rift Branch and across the Eastern Rift Branch, corresponding to areas of active volcanism. (2) Two linear low velocity zones are imaged trending southeast and southwest from the Eastern Rift Branch in Tanzania, corresponding with areas of seismic activity and indicating possible incipient rifting. (3) High velocity regions are observed beneath both the Tanzania Craton and the Bangweulu Block. Furthermore, this model indicates several new findings. (1) High velocities beneath the Bangweulu Block extend to longer periods than those found beneath the Tanzania Craton, perhaps indicating that rifting processes have not altered the Bangweulu Block as extensively as the Tanzania Craton. (2) At long periods, the fast velocities beneath the Bangweulu Block extend eastwards beyond the surficial boundaries, to and possibly across the Malawi Rift. This may suggest the presence of older, thick blocks of lithosphere in regions where they are not exposed at the surface. (3) Finally, while the findings of this study correspond well with previous studies in regions of overlapping

  9. Constraints to estimating the prevalence of trypanosome infections in East African zebu cattle.

    PubMed

    Cox, Andrew P; Tosas, Olga; Tilley, Aimee; Picozzi, Kim; Coleman, Paul; Hide, Geoff; Welburn, Susan C

    2010-09-06

    In East Africa, animal trypanosomiasis is caused by many tsetse transmitted protozoan parasites including Trypanosoma vivax, T. congolense and subspecies of T. brucei s.l. (T. b. brucei and zoonotic human infective T. b. rhodesiense) that may co-circulate in domestic and wild animals. Accurate species-specific prevalence measurements of these parasites in animal populations are complicated by mixed infections of trypanosomes within individual hosts, low parasite densities and difficulties in conducting field studies. Many Polymerase Chain Reaction (PCR) based diagnostic tools are available to characterise and quantify infection in animals. These are important for assessing the contribution of infections in animal reservoirs and the risk posed to humans from zoonotic trypanosome species. New matrices for DNA capture have simplified large scale field PCR analyses but few studies have examined the impact of these techniques on prevalence estimations. The Whatman FTA matrix has been evaluated using a random sample of 35 village zebu cattle from a population naturally exposed to trypanosome infection. Using a generic trypanosome-specific PCR, prevalence was systematically evaluated. Multiple PCR samples taken from single FTA cards demonstrated that a single punch from an FTA card is not sufficient to confirm the infectivity status of an individual animal as parasite DNA is unevenly distributed across the card. At low parasite densities in the host, this stochastic sampling effect results in underestimation of prevalence based on single punch PCR testing. Repeated testing increased the estimated prevalence of all Trypanosoma spp. from 9.7% to 86%. Using repeat testing, a very high prevalence of pathogenic trypanosomes was detected in these local village cattle: T. brucei (34.3%), T. congolense (42.9%) and T. vivax (22.9%). These results show that, despite the convenience of Whatman FTA cards and specific PCR based detection tools, the chronically low parasitaemias in

  10. 3D Numerical Rift Modeling with Application to the East African Rift System

    NASA Astrophysics Data System (ADS)

    Glerum, A.; Brune, S.; Naliboff, J.

    2017-12-01

    As key components of plate tectonics, continental rifting and the formation of passive margins have been extensively studied with both analogue models and numerical techniques. Only recently however, technical advances have enabled numerical investigations into rift evolution in three dimensions, as is actually required for including those processes that cause rift-parallel variability, such as structural inheritance and oblique extension (Brune 2016). We use the massively parallel finite element code ASPECT (Kronbichler et al. 2012; Heister et al. 2017) to investigate rift evolution. ASPECT's adaptive mesh refinement enables us to focus resolution on the regions of interest (i.e. the rift center), while leaving other areas such as the asthenospheric mantle at coarse resolution, leading to kilometer-scale local mesh resolution in 3D. Furthermore, we implemented plastic and viscous strain weakening of the nonlinear viscoplastic rheology required to develop asymmetric rift geometries (e.g. Huismans and Beaumont 2003). Additionally created plugins to ASPECT allow us to specify initial temperature and composition conditions based on geophysical data (e.g. LITHO1.0, Pasyanos et al. 2014) or to prescribe more general along-strike variation in the initial strain seeding the rift. Employing the above functionality, we construct regional models of the East African Rift System (EARS), the world's largest currently active rift. As the EARS is characterized by both orthogonal and oblique rift sections, multi-phase extension histories as well as magmatic and a-magmatic branches (e.g. Chorowicz 2005; Ebinger and Scholz 2011), it constitutes an extensive natural laboratory for our research into the 3D nature of continental rifting. References:Brune, S. (2016), in Plate boundaries and natural hazards, AGU Geophysical Monograph 219, J. C. Duarte and W. P. Schellart (Eds.). Chorowicz, J. (2005). J. Afr. Earth Sci., 43, 379-410. Ebinger, C. and Scholz, C. A. (2011), in Tectonics of

  11. A pooled analysis of body mass index and mortality among African Americans.

    PubMed

    Cohen, Sarah S; Park, Yikyung; Signorello, Lisa B; Patel, Alpa V; Boggs, Deborah A; Kolonel, Laurence N; Kitahara, Cari M; Knutsen, Synnove F; Gillanders, Elizabeth; Monroe, Kristine R; Berrington de Gonzalez, Amy; Bethea, Traci N; Black, Amanda; Fraser, Gary; Gapstur, Susan; Hartge, Patricia; Matthews, Charles E; Park, Song-Yi; Purdue, Mark P; Singh, Pramil; Harvey, Chinonye; Blot, William J; Palmer, Julie R

    2014-01-01

    Pooled analyses among whites and East Asians have demonstrated positive associations between all-cause mortality and body mass index (BMI), but studies of African Americans have yielded less consistent results. We examined the association between BMI and all-cause mortality in a sample of African Americans pooled from seven prospective cohort studies: NIH-AARP, 1995-2009; Adventist Health Study 2, 2002-2008; Black Women's Health Study, 1995-2009; Cancer Prevention Study II, 1982-2008; Multiethnic Cohort Study, 1993-2007; Prostate, Lung, Colorectal and Ovarian Screening Trial, 1993-2009; Southern Community Cohort Study, 2002-2009. 239,526 African Americans (including 100,175 never smokers without baseline heart disease, stroke, or cancer), age 30-104 (mean 52) and 71% female, were followed up to 26.5 years (mean 11.7). Hazard ratios (HR) and 95% confidence intervals (CI) for mortality were derived from multivariate Cox proportional hazards models. Among healthy, never smokers (11,386 deaths), HRs (CI) for BMI 25-27.4, 27.5-29.9, 30-34.9, 35-39.9, 40-49.9, and 50-60 kg/m(2) were 1.02 (0.92-1.12), 1.06 (0.95-1.18), 1.32 (1.18-1.47), 1.54 (1.29-1.83), 1.93 (1.46-2.56), and 1.93 (0.80-4.69), respectively among men and 1.06 (0.99-1.15), 1.15 (1.06-1.25), 1.24 (1.15-1.34), 1.58 (1.43-1.74), 1.80 (1.60-2.02), and 2.31 (1.74-3.07) respectively among women (reference category 22.5-24.9). HRs were highest among those with the highest educational attainment, longest follow-up, and for cardiovascular disease mortality. Obesity was associated with a higher risk of mortality in African Americans, similar to that observed in pooled analyses of whites and East Asians. This study provides compelling evidence to support public health efforts to prevent excess weight gain and obesity in African Americans.

  12. East Africa seminar and workshop of remote sensing of natural resources and environment

    USGS Publications Warehouse

    Deutsch, Morris

    1975-01-01

    Report on total program covering East Africa Seminar and Workshop on remote sensing of natural resources and the environment held in Nairobi, Kenya, March 21 April 3, 1974, attended by participants from 10 English-speaking African nations. Appendices are included for Seminar proceedings, workshop lectures and outlines, field trip reports and critiques by participants, and reports on potential applications of an operational earth resources satellite for the participating countries.

  13. Study of Mycobacterium tuberculosis Complex Genotypic Diversity in Malaysia Reveals a Predominance of Ancestral East-African-Indian Lineage with a Malaysia-Specific Signature

    PubMed Central

    Ismail, Fazli; Couvin, David; Farakhin, Izzah; Abdul Rahman, Zaidah; Rastogi, Nalin; Suraiya, Siti

    2014-01-01

    Background Tuberculosis (TB) still constitutes a major public health problem in Malaysia. The identification and genotyping based characterization of Mycobacterium tuberculosis complex (MTBC) isolates causing the disease is important to determine the effectiveness of the control and surveillance programs. Objectives This study intended a first assessment of spoligotyping-based MTBC genotypic diversity in Malaysia followed by a comparison of strains with those prevailing in neighboring countries by comparison with an international MTBC genotyping database. Methods Spoligotyping was performed on a total of 220 M. tuberculosis clinical isolates collected in Kelantan and Kuala Lumpur. The results were compared with the SITVIT2 international database of the Pasteur Institute of Guadeloupe. Results Spoligotyping revealed 77 different patterns: 22 corresponded to orphan patterns while 55 patterns containing 198 isolates were assigned a Spoligo International Type (SIT) designation in the database (the latter included 6 newly created SITs). The eight most common SITs grouped 141 isolates (5 to 56 strains per cluster) as follows: SIT1/Beijing, n = 56, 25.5%; SIT745/EAI1-SOM, n = 33, 15.0%; SIT591/EAI6-BGD1, n = 13, 5.9%; SIT256/EAI5, n = 12, 5.5%; SIT236/EAI5, n = 10, 4.6%; SIT19/EAI2-Manila, n = 9, 4.1%; SIT89/EAI2-Nonthaburi, n = 5, 2.3%; and SIT50/H3, n = 3, 1.4%. The association between city of isolation and lineages was statistically significant; Haarlem and T lineages being higher in Kuala Lumpur (p<0.01). However, no statistically significant differences were noted when comparing drug resistance vs. major lineages, nor between gender and clades. Conclusions The ancestral East-African-Indian (EAI) lineage was most predominant followed by the Beijing lineage. A comparison of strains with those prevailing in neighboring countries in South Asia, East Asia and South East Asia underlined the phylogeographical specificity of SIT745 for

  14. Regional assessment of lake ecological states using Landsat: A classification scheme for alkaline-saline, flamingo lakes in the East African Rift Valley

    NASA Astrophysics Data System (ADS)

    Tebbs, E. J.; Remedios, J. J.; Avery, S. T.; Rowland, C. S.; Harper, D. M.

    2015-08-01

    In situ reflectance measurements and Landsat satellite imagery were combined to develop an optical classification scheme for alkaline-saline lakes in the Eastern Rift Valley. The classification allows the ecological state and consequent value, in this case to Lesser Flamingos, to be determined using Landsat satellite imagery. Lesser Flamingos depend on a network of 15 alkaline-saline lakes in East African Rift Valley, where they feed by filtering cyanobacteria and benthic diatoms from the lakes' waters. The classification developed here was based on a decision tree which used the reflectance in Landsat ETM+ bands 2-4 to assign one of six classes: low phytoplankton biomass; suspended sediment-dominated; microphytobenthos; high cyanobacterial biomass; cyanobacterial scum and bleached cyanobacterial scum. The classification accuracy was 77% when verified against in situ measurements. Classified imagery and timeseries were produced for selected lakes, which show the different ecological behaviours of these complex systems. The results have highlighted the importance to flamingos of the food resources offered by the extremely remote Lake Logipi. This study has demonstrated the potential of high spatial resolution, low spectral resolution sensors for providing ecologically valuable information at a regional scale, for alkaline-saline lakes and similar hypereutrophic inland waters.

  15. Urinary Incontinence and Psychological Distress in Community-Dwelling Older African Americans and Whites

    PubMed Central

    Bogner, Hillary R.

    2010-01-01

    OBJECTIVES To compare the association between urinary incontinence (UI) and psychological distress in older African Americans and whites. DESIGN A population-based longitudinal survey. SETTING Continuing participants in a study of community-dwelling adults who were initially living in East Baltimore in 1981. PARTICIPANTS African Americans and whites aged 50 and older at follow-up interviews performed between 1993 and 1996 for whom complete data were available (n = 747). MEASUREMENTS Participants were classified as incontinent if any uncontrolled urine loss within the 12 months before the interview was reported. Psychological distress was assessed using the General Health Questionnaire (GHQ). RESULTS African Americans with UI were more likely to experience psychological distress as measured using the GHQ than were African Americans without UI (unadjusted odds ratio = 4.22, 95% confidence interval = 1.72–10.39). In multivariate models that controlled for age, sex, education, functional status, cognitive status, and chronic medical conditions, this association remained statistically significant. The association between UI and psychological distress did not achieve statistical significance in whites. CONCLUSION The effect of UI on emotional well-being may be greater for African Americans than for whites. PMID:15507064

  16. Toward a Late Quaternary tephrostratigraphic framework for East African palaeoenvironmental records

    NASA Astrophysics Data System (ADS)

    Lane, Christine; Martin-Jones, Catherine; Johnson, Thomas; Lamb, Henry; Pearce, Nick; Scholz, Christopher; Smith, Victoria; Verschuren, Dirk

    2015-04-01

    Understanding the spatial and temporal variability of climate forcing and environmental response across a continent as climatically diverse as Africa relies upon comparison of data from widespread palaeoenvironmental archives. Accurate, precise and independent chronologies for such records are essential; however this remains a challenge in many environments, often preventing the valid comparison of detailed palaeo-proxy records. Many studies have now shown that volcanic ash (tephra) can be detected in terrestrial and marine sediments thousands of kilometres from their source, often as microscopic or "cryptic" layers. As well as offering opportunities for both direct (e.g. by 40Ar/39Ar methods) and indirect (e.g. by associated 14C dates) dating of the sediment sequence, tephra layers can provide stratigraphic tie-lines between archives, facilitating precise correlations at single moments in time. Furthermore, where two or more tephra layers are co-located in multiple records, rates of change can be compared within a period of equivalent duration, even in the absence of absolute age estimates. Investigations into the presence of visible and non-visible (crypto-) tephra layers within lacustrine palaeoenvironmental records of the last ~150 ka BP from across East Africa are revealing the potential for this approach to (i) correlate palaeoclimate archives from across and beyond tropical Africa within a regional tephrostratigraphic framework; (ii) provide age constraints for individual core chronologies, in particular beyond the limits of radiocarbon dating; and (iii) increase our knowledge of the history of Late Quaternary explosive volcanism in East Africa.

  17. Tectonics and Volcanism of East Africa as Seen Using Remote Sensing Imagery

    NASA Technical Reports Server (NTRS)

    Hutt, Duncan John

    1996-01-01

    The East African Rift is the largest area of active continental geology. The tectonics of this area has been studied with remote sensing data, including AVHRR, Landsat MSS and TM, SPOT, and electronic still camera from Shuttle. Lineation trends have been compared to centers of volcanic and earthquake activity as well as the trends shown on existing geologic maps. Remote sensing data can be used effectively to reveal and analyze significant tectonic features in this area.

  18. Satellite tracking of two lesser spotted eagles Aquila pomarina, migrating from Namibia

    USGS Publications Warehouse

    Meyburg, B.-U.; Ellis, D.H.; Meyburg, C.; Mendelsohn, J.; Scheller, W.

    2001-01-01

    One immature and one subadult Lesser Spotted Eagle, Aquila pomarina, were followed by satellite telemetry from their non-breeding areas in Namibia. Both birds were fitted with transmitters (PTTs) in February 1994 and tracked, the immature for six months and two weeks, over distances of 10084 and 16773 km, respectively. During their time in Namibia both birds? movements were in response to good local rainfall. The immature eagle left Namibia at the end of February, the subadult at the end of March. They flew to their respective summer quarters in Hungary and the Ukraine, arriving there 2.5 and 1.5 months later than the breeding adults. The immature eagle took over two months longer on the homeward journey than a breeding male followed by telemetry in a previous study. On returning, the immature eagle followed the narrow flightpath through Africa used by other Lesser Spotted Eagles on their outward migration. It reached this corridor, which runs roughly between longitudes 31? and 36? East from Suez to Lake Tanganyika, veering from the shortest route in a direction east-northeast through Angola and Zambia to the southern end of Lake Tanganyika. The route taken by the subadult bird on its return migration differed markedly from that of all Lesser Spotted Eagles tracked to date, running further west through the Democratic Republic of Congo where, level with the equator, it flew over the eastern rainforest of that country. The outward migration, however, followed the same corridor and coincided in time with the migration of adults.

  19. Practices and discourses of ubuntu: Implications for an African model of disability?

    PubMed

    Berghs, Maria

    2017-01-01

    Southern African scholars and activists working in disability studies have argued that ubuntu or unhu is a part of their world view. Thinking seriously about ubuntu, as a shared collective humanness or social ethics, means to examine how Africans have framed a struggle for this shared humanity in terms of decolonisation and activism. Three examples of applications of ubuntu are given, with two mainly linked to making explicit umaka. Firstly, ubuntu is linked to making visible the invisible inequalities for a common humanity in South Africa. Secondly, it becomes correlated to the expression of environmental justice in West and East African countries. An African model of disability that encapsulates ubuntu is correlated to how Africans have illustrated a social ethics of a common humanity in their grassroots struggles against oppression and disablement in the 20th century. Ubuntu also locates disability politically within the wider environment and practices of sustainability which are now important to the post-2105 agenda, Convention on the Rights of Persons with Disabilities (CRPD) and the (UN) Sustainable Development Goals linked to climate change. A different kind of political action linked to social justice seems to be evolving in line with ubuntu . This has implications for the future of disability studies.

  20. Practices and discourses of ubuntu: Implications for an African model of disability?

    PubMed Central

    2017-01-01

    Background Southern African scholars and activists working in disability studies have argued that ubuntu or unhu is a part of their world view. Objectives Thinking seriously about ubuntu, as a shared collective humanness or social ethics, means to examine how Africans have framed a struggle for this shared humanity in terms of decolonisation and activism. Method Three examples of applications of ubuntu are given, with two mainly linked to making explicit umaka. Firstly, ubuntu is linked to making visible the invisible inequalities for a common humanity in South Africa. Secondly, it becomes correlated to the expression of environmental justice in West and East African countries. Results An African model of disability that encapsulates ubuntu is correlated to how Africans have illustrated a social ethics of a common humanity in their grassroots struggles against oppression and disablement in the 20th century. Ubuntu also locates disability politically within the wider environment and practices of sustainability which are now important to the post-2105 agenda, Convention on the Rights of Persons with Disabilities (CRPD) and the (UN) Sustainable Development Goals linked to climate change. Conclusion A different kind of political action linked to social justice seems to be evolving in line with ubuntu. This has implications for the future of disability studies. PMID:28730067

  1. First Miocene rodent from Lebanon provides the 'missing link' between Asian and African gundis (Rodentia: Ctenodactylidae).

    PubMed

    López-Antoñanzas, Raquel; Knoll, Fabien; Maksoud, Sibelle; Azar, Dany

    2015-08-07

    Ctenodactylinae (gundis) is a clade of rodents that experienced, in Miocene time, their greatest diversification and widest distribution. They expanded from the Far East, their area of origin, to Africa, which they entered from what would become the Arabian Peninsula. Questions concerning the origin of African Ctenodactylinae persist essentially because of a poor fossil record from the Miocene of Afro-Arabia. However, recent excavations in the Late Miocene of Lebanon have yielded a key taxon for our understanding of these issues. Proafricanomys libanensis nov. gen. nov. sp. shares a variety of dental characters with both the most primitive and derived members of the subfamily. A cladistic analysis demonstrates that this species is the sister taxon to a clade encompassing all but one of the African ctenodactylines, plus a southern European species of obvious African extraction. As such, Proafricanomys provides the 'missing link' between the Asian and African gundis.

  2. First Miocene rodent from Lebanon provides the 'missing link' between Asian and African gundis (Rodentia: Ctenodactylidae)

    PubMed Central

    López-Antoñanzas, Raquel; Knoll, Fabien; Maksoud, Sibelle; Azar, Dany

    2015-01-01

    Ctenodactylinae (gundis) is a clade of rodents that experienced, in Miocene time, their greatest diversification and widest distribution. They expanded from the Far East, their area of origin, to Africa, which they entered from what would become the Arabian Peninsula. Questions concerning the origin of African Ctenodactylinae persist essentially because of a poor fossil record from the Miocene of Afro-Arabia. However, recent excavations in the Late Miocene of Lebanon have yielded a key taxon for our understanding of these issues. Proafricanomys libanensis nov. gen. nov. sp. shares a variety of dental characters with both the most primitive and derived members of the subfamily. A cladistic analysis demonstrates that this species is the sister taxon to a clade encompassing all but one of the African ctenodactylines, plus a southern European species of obvious African extraction. As such, Proafricanomys provides the 'missing link' between the Asian and African gundis. PMID:26250050

  3. Low-intensity violence and the social determinants of adolescent health among three East African pastoralist communities.

    PubMed

    Pike, Ivy L; Hilton, Charles; Österle, Matthias; Olungah, Owuor

    2018-04-01

    Recently, strong pleas have emerged to place the health of adolescents on the global health agenda. To reposition adolescence front and center, scholars argue that we must work toward a richly contextualized approach that considers the role that social environments play in shaping the final stages of growth and development. We aim to contribute to this deeper understanding of the social determinants of global adolescent health by offering a case study of three nomadic pastoralist communities from northern Kenya. In addition to noteworthy political and economic marginalization, East African pastoralist communities also contend with chronic, low intensity intercommunity conflict. Data collected over five extensive visits from 2008 to 2011, include the 10-19 year olds from 215 randomly sampled Pokot, Samburu, and Turkana households. Using a case/control design, we sampled two sites per ethnic community: one directly affected and one less affected by intercommunity violence. Our nutritional findings indicate that teens ages 15-19 years old had significantly higher anthropometric values compared to younger teens. Living in a wealthier household is associated with greater height, body mass indices, and summed skinfolds for boys but not for girls. Anthropometric measures were influenced by household and community variation in the mixed-effects, multi-level regression models. The Self-Report Questionnaire (SRQ-20) was used to assess psychosocial health, with higher scores associated with living in a community directly affected by violence and having lost a loved one due to violence. Our findings highlight the unique nature of adolescent health challenges but also the central role even subtle differences across communities and households play in shaping young people's experiences. With few studies to document the lived experience of pastoralist youth as they move toward adulthood, examining how such challenging socioeconomic environment shapes health seems long overdue

  4. Acral peeling skin syndrome in two East-African siblings: case report.

    PubMed

    Kiprono, Samson K; Chaula, Baraka M; Naafs, Bernard; Masenga, John E

    2012-03-19

    Acral peeling skin syndrome is a rare autosomal recessive genodermatosis due to a missense mutation in transglutaminase 5. The skin peeling occurs at the separation of the stratum corneum from the stratum granulosum. We present a case of two siblings who developed continuous peeling of the palms and soles from the first year of life. This peeling was more severe on the soles than palms and on younger sibling than elder sibling. Peeling is worsened by occlusion and sweating. Sporadic cases of Acral Peeling Skin Syndrome occur in African population. There is variability in time of presentation and clinical severity even within families.

  5. Cratonic roots and lower crustal seismicity: Investigating the role of deep intrusion in the Western rift, Africa

    NASA Astrophysics Data System (ADS)

    Drooff, C.; Ebinger, C. J.; Lavayssiere, A.; Keir, D.; Oliva, S. J.; Tepp, G.; Gallacher, R. J.

    2017-12-01

    Improved seismic imaging beneath the African continent reveals lateral variations in lithospheric thickness, and crustal structure, complementing a growing crust and mantle xenolith data base. Border fault systems in the active cratonic rifts of East Africa are characterized by lower crustal seismicity, both in magmatic sectors and weakly magmatic sectors, providing constraints on crustal rheology and, in some areas, magmatic fluid migration. We report new seismicity data from magmatic and weakly magmatic sectors of the East African rift zone, and place the work in the context of independent geophysical and geochemical studies to models for strain localization during early rifting stages. Specifically, multidisciplinary studies in the Magadi Natron rift sectors reveal volumetrically large magmatic CO2 degassing along border faults with seismicity along projections of surface dips to the lower crust. The magmatic CO2 degassing and high Vp/Vs ratios and reflectivity of the lower crust implies that the border fault serves a conduit between the lower crustal underplating and the atmospheric. Crustal xenoliths in the Eastern rift sector indicate a granulitic lower crust, which is relatively weak in the presence of fluids, arguing against a strong lower crust. Within magmatic sectors, seismic, structural, and geochemistry results indicate that frequent lower crustal earthquakes are promoted by elevated pore pressures from volatile degassing along border faults, and hydraulic fracture around the margins of magma bodies. Within some weakly magmatic sectors, lower crustal earthquakes also occur along projections of border faults to the lower crust (>30 km), and they are prevalent in areas with high Vp/Vs in the lower crust. Within the southern Tanganyika rift, focal mechanisms are predominantly normal with steep nodal planes. Our comparative studies suggest that pervasive metasomatism above a mantle plume, and melt extraction in thin zones between cratonic roots, lead to

  6. Africa's Great Lakes in peril

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Ryan, J.C.

    Three of the great lakes in East Africa are in serious danger. Over the last two decades, overfishing, pollution, and the introduction of the Nile perch, have combined to push into extinction as many as 200 fish species found in Lake Victoria. The recycling of nutrients and oxygen through living and non-living matter has been disrupted and large area of the lake are now depleted of oxygen. Overfishing has had dramatic consequences in Lake Malawi, while Lake Tanganyika's most serious problem is with sedimentation from raw sewage, soil and chemicals. International cooperation will be required to restore these lakes.

  7. First Report of the East-Central South African Genotype of Chikungunya Virus in Rio de Janeiro, Brazil.

    PubMed

    Souza, Thiara Manuele Alves; Azeredo, Elzinandes Leal; Badolato-Corrêa, Jessica; Damasco, Paulo Vieira; Santos, Carla; Petitinga-Paiva, Fabienne; Nunes, Priscila Conrado Guerra; Barbosa, Luciana Santos; Cipitelli, Márcio Costa; Chouin-Carneiro, Thais; Faria, Nieli Rodrigues Costa; Nogueira, Rita Maria Ribeiro; de Bruycker-Nogueira, Fernanda; Dos Santos, Flavia Barreto

    2017-02-14

    Chikungunya virus (CHIKV) is an arbovirus that causes an acute febrile syndrome with a severe and debilitating arthralgia. In Brazil, the Asian and East-Central South African (ECSA) genotypes are circulating in the north and northeast of the country, respectively. In 2015, the first autochthonous cases in Rio de Janeiro, Brazil were reported but until now the circulating strains have not been characterized. Therefore, we aimed here to perform the molecular characterization and phylogenetic analysis of CHIKV strains circulating in the 2016 outbreak occurred in the municipality of Rio de Janeiro. The cases analyzed in this study were collected at a private Hospital, from April 2016 to May 2016, during the chikungunya outbreak in Rio de Janeiro, Brazil. All cases were submitted to the Real Time RT-PCR for CHIKV genome detection and to anti-CHIKV IgM ELISA. Chikungunya infection was laboratorially confirmed by at least one diagnostic method and, randomly selected positive cases (n=10), were partially sequenced (CHIKV E1 gene) and analyzed. The results showed that all the samples grouped in ECSA genotype branch and the molecular characterization of the fragment did not reveal the A226V mutation in the Rio de Janeiro strains analyzed, but a K211T amino acid substitution was observed for the first time in all samples and a V156A substitution in two of ten samples. Phylogenetic analysis and molecular characterization reveals the circulation of the ECSA genotype of CHIKV in the city of Rio de Janeiro, Brazil and two amino acids substitutions (K211T and V156A) exclusive to the CHIKV strains obtained during the 2016 epidemic, were reported.

  8. Numerical modeling of continental rifting: Implications for the East African Rift system

    NASA Astrophysics Data System (ADS)

    Koptev, Alexander; Burov, Evgueni; Calais, Eric; Leroy, Sylvie; Gerya, Taras; Guillou-Frottier, Laurent; Cloetingh, Sierd

    2016-04-01

    The East African Rift system (EARS) provides a unique system with juxtaposition of two contrasting yet simultaneously formed rift branches, the eastern, magma-rich, and the western, magma-poor, on either side of the old thick Tanzanian craton embedded into younger lithosphere. Here we take advantage of the improvements in our understanding of deep structures, geological evolution and recent kinematics, together with new cutting edge numerical modeling techniques to design a three-dimensional ultra-high resolution viscous plastic thermo-mechanical numerical model that accounts for thermo-rheological structure of the lithosphere and hence captures the essential geophysical features of the central EARS. Based on our experiments, we show that in case of the mantle plume seeded slightly to the northeast of the craton center, the ascending plume material is deflected by the cratonic keel and preferentially channeled along the eastern side of the craton, leading to formation of a large rift zone characterized by important magmatic activity with substantial amounts of melts derived from mantle plume material. This model is in good agreement with the observations in the EARS, as it reproduces the magmatic eastern branch and at the same time, anticlockwise rotation of the craton. However, this experiment does not reproduce the observed strain localization along the western margin of the cratonic bloc. To explain the formation of contrasting magmatic and amagmatic rift branches initiating simultaneously on either side of a non-deforming block as observed in the central EARS, we experimentally explored several scenarios of which three can be retained as specifically pertaining to the EARS: (1) The most trivial first scenario assumes rheologically weak vertical interface simulating the suture zone observed in the geological structure along the western border of the craton; (2) The second scenario involves a second smaller plume initially shifted in SW direction; (3) Finally, a

  9. Nontuberculous mycobacteria in Middle East: Current situation and future challenges.

    PubMed

    Velayati, Ali Akbar; Rahideh, Sanaz; Nezhad, Zahra Derakhshani; Farnia, Parissa; Mirsaeidi, Mehdi

    2015-03-01

    Nontuberculous mycobacteria (NTM) are a diverse group of bacterial species that are distributed in the environment. Many of these environmental bacteria can cause disease in humans. The identification of NTM in environmental sources is important for both clinical and epidemiological purposes. In this study, the distribution of NTM species from environmental and clinical samples in the Middle East was reviewed. In order to provide an overview of NTM, as well as recent epidemiological trends, all studies addressing NTM in the Middle East from 1984 to 2014 were reviewed. A total of 96 articles were found, in which 1751 NTM strains were isolated and 1084 of which were obtained from clinical samples, 619 from environmental samples and 48 were cited by case reports. Mycobacterium fortuitum was the most common rapid growing mycobacteria (RGM) isolated from both clinical (269 out of 447 RGM; 60.1%) and environmental (135 out of 289 RGM; 46.7%) samples. Mycobacterium avium complex (MAC) was the most common slow growing mycobacteria (SGM) isolated from clinical samples (140 out of 637 SGM; 21.9%). An increasing trend in NTM isolation from the Middle East was noted over the last 5years. This review demonstrates the increasing concern regarding NTM disease in the Middle East, emphasizing the need for regional collaboration and coordination in order to respond appropriately. Copyright © 2015 Asian African Society for Mycobacteriology. Published by Elsevier Ltd. All rights reserved.

  10. Middle East fuel supply & gas exports for power generation

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Mitchell, G.K.; Newendorp, T.

    1995-12-31

    The Middle East countries that border on, or are near, the Persian Gulf hold over 65% of the world`s estimated proven crude oil reserves and 32% of the world`s estimated proven natural gas reserves. In fact, approximately 5% of the world`s total proven gas reserves are located in Qatar`s offshore North Field. This large natural gas/condensate field is currently under development to supply three LNG export projects, as well as a sub-sea pipeline proposal to export gas to Pakistan. The Middle East will continue to be a major source of crude oil and oil products to world petroleum markets, includingmore » fuel for existing and future base load, intermediate cycling and peaking electric generation plants. In addition, as the Persian Gulf countries turn their attention to exploiting their natural gas resources, the fast-growing need for electricity in the Asia-Pacific and east Africa areas offers a potential market for both pipeline and LNG export opportunities to fuel high efficiency, gas-fired combustion turbine power plants. Mr. Mitchell`s portion of this paper will discuss the background, status and timing of several Middle Eastern gas export projects that have been proposed. These large gas export projects are difficult and costly to develop and finance. Consequently, any IPP developers that are considering gas-fired projects which require Mid-East LNG as a fuel source, should understand the numerous sources and timing to securing project debt, loan terms and conditions, and, restrictions/credit rating issues associated with securing financing for these gas export projects. Mr. Newendorp`s section of the paper will cover the financing aspects of these projects, providing IPP developers with additional considerations in selecting the primary fuel supply for an Asian-Pacific or east African electric generation project.« less

  11. The continuing problem of human African trypanosomiasis (sleeping sickness).

    PubMed

    Kennedy, Peter G E

    2008-08-01

    Human African trypanosomiasis, also known as sleeping sickness, is a neglected disease, and it continues to pose a major threat to 60 million people in 36 countries in sub-Saharan Africa. Transmitted by the bite of the tsetse fly, the disease is caused by protozoan parasites of the genus Trypanosoma and comes in two types: East African human African trypanosomiasis caused by Trypanosoma brucei rhodesiense and the West African form caused by Trypanosoma brucei gambiense. There is an early or hemolymphatic stage and a late or encephalitic stage, when the parasites cross the blood-brain barrier to invade the central nervous system. Two critical current issues are disease staging and drug therapy, especially for late-stage disease. Lumbar puncture to analyze cerebrospinal fluid will remain the only method of disease staging until reliable noninvasive methods are developed, but there is no widespread consensus as to what exactly defines biologically central nervous system disease or what specific cerebrospinal fluid findings should justify drug therapy for late-stage involvement. All four main drugs used for human African trypanosomiasis are toxic, and melarsoprol, the only drug that is effective for both types of central nervous system disease, is so toxic that it kills 5% of patients who receive it. Eflornithine, alone or combined with nifurtimox, is being used increasingly as first-line therapy for gambiense disease. There is a pressing need for an effective, safe oral drug for both stages of the disease, but this will require a significant increase in investment for new drug discovery from Western governments and the pharmaceutical industry.

  12. Genetic and antigenic characterization of serotype O FMD viruses from East Africa for the selection of suitable vaccine strain.

    PubMed

    Lloyd-Jones, Katie; Mahapatra, Mana; Upadhyaya, Sasmita; Paton, David J; Babu, Aravindh; Hutchings, Geoff; Parida, Satya

    2017-12-14

    Foot-and-mouth disease (FMD) is endemic in Eastern Africa with circulation of multiple serotypes of the virus in the region. Most of the outbreaks are caused by serotype O followed by serotype A. The lack of concerted FMD control programmes in Africa has provided little incentive for vaccine producers to select vaccines that are tailored to circulating regional isolates creating further negative feedback to deter the introduction of vaccine-based control schemes. In this study a total of 80 serotype O FMD viruses (FMDV) isolated from 1993 to 2012 from East and North Africa were characterized by virus neutralisation tests using bovine antisera to three existing (O/KEN/77/78, O/Manisa and O/PanAsia-2) and three putative (O/EA/2002, O/EA/2009 and O/EA/2010) vaccine strains and by capsid sequencing. Genetically, these viruses were grouped as either of East African origin with subdivision into four topotypes (EA-1, 2, 3 and 4) or of Middle-East South Asian (ME-SA) topotype. The ME-SA topotype viruses were mainly detected in Egypt and Libya reflecting the trade links with the Middle East countries. There was good serological cross-reactivity between the vaccine strains and most of the field isolates analysed, indicating that vaccine selection should not be a major constraint for control of serotype O FMD by vaccination, and that both local and internationally available commercial vaccines could be used. The O/KEN/77/78 vaccine, commonly used in the region, exhibited comparatively lower percent in vitro match against the predominant topotypes (EA-2 and EA-3) circulating in the region whereas O/PanAsia-2 and O/Manisa vaccines revealed broader protection against East African serotype O viruses, even though they genetically belong to the ME-SA topotype. Copyright © 2017 The Author(s). Published by Elsevier Ltd.. All rights reserved.

  13. Acral peeling skin syndrome in two East-African siblings: case report

    PubMed Central

    2012-01-01

    Background Acral peeling skin syndrome is a rare autosomal recessive genodermatosis due to a missense mutation in transglutaminase 5. The skin peeling occurs at the separation of the stratum corneum from the stratum granulosum. Case presentation We present a case of two siblings who developed continuous peeling of the palms and soles from the first year of life. This peeling was more severe on the soles than palms and on younger sibling than elder sibling. Peeling is worsened by occlusion and sweating. Conclusions Sporadic cases of Acral Peeling Skin Syndrome occur in African population. There is variability in time of presentation and clinical severity even within families. PMID:22429841

  14. Gene-centric meta-analysis of lipid traits in African, East Asian and Hispanic populations

    USDA-ARS?s Scientific Manuscript database

    Meta-analyses of European populations has successfully identified genetic variants in over 100 loci associated with lipid levels, but our knowledge in other ethnicities remains limited. To address this, we performed dense genotyping of circa 2,000 candidate genes in 7,657 African Americans, 1,315 Hi...

  15. Constraints to estimating the prevalence of trypanosome infections in East African zebu cattle

    PubMed Central

    2010-01-01

    Background In East Africa, animal trypanosomiasis is caused by many tsetse transmitted protozoan parasites including Trypanosoma vivax, T. congolense and subspecies of T. brucei s.l. (T. b. brucei and zoonotic human infective T. b. rhodesiense) that may co-circulate in domestic and wild animals. Accurate species-specific prevalence measurements of these parasites in animal populations are complicated by mixed infections of trypanosomes within individual hosts, low parasite densities and difficulties in conducting field studies. Many Polymerase Chain Reaction (PCR) based diagnostic tools are available to characterise and quantify infection in animals. These are important for assessing the contribution of infections in animal reservoirs and the risk posed to humans from zoonotic trypanosome species. New matrices for DNA capture have simplified large scale field PCR analyses but few studies have examined the impact of these techniques on prevalence estimations. Results The Whatman FTA matrix has been evaluated using a random sample of 35 village zebu cattle from a population naturally exposed to trypanosome infection. Using a generic trypanosome-specific PCR, prevalence was systematically evaluated. Multiple PCR samples taken from single FTA cards demonstrated that a single punch from an FTA card is not sufficient to confirm the infectivity status of an individual animal as parasite DNA is unevenly distributed across the card. At low parasite densities in the host, this stochastic sampling effect results in underestimation of prevalence based on single punch PCR testing. Repeated testing increased the estimated prevalence of all Trypanosoma spp. from 9.7% to 86%. Using repeat testing, a very high prevalence of pathogenic trypanosomes was detected in these local village cattle: T. brucei (34.3%), T. congolense (42.9%) and T. vivax (22.9%). Conclusions These results show that, despite the convenience of Whatman FTA cards and specific PCR based detection tools, the

  16. Impact of species delimitation and sampling on niche models and phylogeographical inference: A case study of the East African reed frog Hyperolius substriatus Ahl, 1931.

    PubMed

    Bittencourt-Silva, Gabriela B; Lawson, Lucinda P; Tolley, Krystal A; Portik, Daniel M; Barratt, Christopher D; Nagel, Peter; Loader, Simon P

    2017-09-01

    Ecological niche models (ENMs) have been used in a wide range of ecological and evolutionary studies. In biogeographic studies these models have, among other things, helped in the discovery of new allopatric populations, and even new species. However, small sample sizes and questionable taxonomic delimitation can challenge models, often decreasing their accuracy. Herein we examine the sensitivity of ENMs to the addition of new, geographically isolated populations, and the impact of applying different taxonomic delimitations. The East African reed frog Hyperolius substriatus Ahl, 1931 was selected as a case study because it has been the subject of previous ENM predictions. Our results suggest that addition of new data and reanalysis of species lineages of H. substriatus improved our understanding of the evolutionary history of this group of frogs. ENMs provided robust predictions, even when some populations were deliberately excluded from the models. Splitting the lineages based on genetic relationships and analysing the ENMs separately provided insights about the biogeographical processes that led to the current distribution of H. substriatus. Copyright © 2017 Elsevier Inc. All rights reserved.

  17. Evolutionary relationships in the sand-dwelling cichlid lineage of lake tanganyika suggest multiple colonization of rocky habitats and convergent origin of biparental mouthbrooding.

    PubMed

    Koblmüller, Stephan; Salzburger, Walter; Sturmbauer, Christian

    2004-01-01

    The cichlid species flock of Lake Tanganyika is comprised of seven seeding lineages that evolved in step with changes of the lake environment. One seeding lineage diversified into at least six lineages within a short period of time. Our study focuses on the diversification of one of these lineages, the Ectodini, comprising highly specialized, sand- and rock-dwelling species. They display two distinct breeding styles: maternal and biparental mouthbrooding. By analyzing three mtDNA gene segments in 30 species representing all 13 described genera, we show that the Ectodini rapidly diversified into four clades at the onset of their radiation. The monotypic genus Grammatotria is likely to represent the most ancestral split, followed by the almost contemporary origin of three additional clades, the first comprising the benthic genus Callochromis, the second comprising the benthic genera Asprotilapia, Xenotilapia, Enantiopus, and Microdontochromis, and the third comprising the semi-pelagic genera Ophthalmotilapia, Cardiopharynx, Cyathopharynx, Ectodus, Aulonocranus, Lestradea, and Cunningtonia. Our study confirms the benthic and sand-dwelling life-style as ancestral. Rocky habitats were colonized independently in the Xenotilapia- and Ophthalmotilapia-clade. The Xenotilapia-clade comprises both maternal and biparental mouthbrooders. Their mode of breeding appears to be highly plastic: biparental mouthbrooding either evolved once in the common ancestor of the clade, to be reverted at least three times, or evolved at least five times independently from a maternally mouthbrooding ancestor. Furthermore, the genera Xenotilapia, Microdontochromis, Lestradea, and Ophthalmotilapia appeared paraphyletic in our analyses, suggesting the need of taxonomic revision.

  18. 25. First floor, east wall bathroom, looking east Veterans ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    25. First floor, east wall bathroom, looking east - Veterans Administration Center, Officers Duplex Quarters, 5302 East Kellogg (Legal Address); 5500 East Kellogg (Common Address), Wichita, Sedgwick County, KS

  19. Early Precambrian gneiss terranes and Pan-African island arcs in Yemen: Crustal accretion of the eastern Arabian Shield

    NASA Astrophysics Data System (ADS)

    Windley, Brian F.; Whitehouse, Martin J.; Ba-Bttat, Mahfood A. O.

    1996-02-01

    Within the Precambrian of Yemen, we have identified four gneiss terranes and two island-arc terranes on the basis of existing literature, mapping, and our own field observations, together with new Sm-Nd isotopic data. The two western gneiss terranes can be correlated with well-documented terranes (Asir and Afif) in Saudi Arabia. To the east of these, the Abas and Al-Mahfid gneiss terranes yield Sm-Nd model ages (tDM) of 1.7 2.3 Ga and 1.3 2.7 Ga, respectively, and cannot be correlated with any documented terranes in Saudi Arabia. These two terranes are separated by a Pan-African island-arc terrane that has been obducted onto one or both of the gneiss terranes, and a second arc bounds the Al-Mahfid gneiss terrane to the east. Our discovery of extensive Proterozoic to late Archean gneisses in Yemen provides important constraints upon the much-discussed tectonic framework of northeast Gondwana and the rate of Pan-African crustal growth. The terranes in Yemen may be correlated with comparable terranes on the eastern margin of the Arabian Shield and in northern Somalia. Thus Yemen provides a link between the arc collage of the Arabian Shield and the gneissic Mozambique belt of East Africa.

  20. Gut Microbiota Dynamics during Dietary Shift in Eastern African Cichlid Fishes

    PubMed Central

    Baldo, Laura; Riera, Joan Lluís; Tooming-Klunderud, Ave; Albà, M. Mar; Salzburger, Walter

    2015-01-01

    The gut microbiota structure reflects both a host phylogenetic history and a signature of adaptation to the host ecological, mainly trophic niches. African cichlid fishes, with their array of closely related species that underwent a rapid dietary niche radiation, offer a particularly interesting system to explore the relative contribution of these two factors in nature. Here we surveyed the host intra- and interspecific natural variation of the gut microbiota of five cichlid species from the monophyletic tribe Perissodini of lake Tanganyika, whose members transitioned from being zooplanktivorous to feeding primarily on fish scales. The outgroup riverine species Astatotilapia burtoni, largely omnivorous, was also included in the study. Fusobacteria, Firmicutes and Proteobacteria represented the dominant components in the gut microbiota of all 30 specimens analysed according to two distinct 16S rRNA markers. All members of the Perissodini tribe showed a homogenous pattern of microbial alpha and beta diversities, with no significant qualitative differences, despite changes in diet. The recent diet shift between zooplantkon- and scale-eaters simply reflects on a significant enrichment of Clostridium taxa in scale-eaters where they might be involved in the scale metabolism. Comparison with the omnivorous species A. burtoni suggests that, with increased host phylogenetic distance and/or increasing herbivory, the gut microbiota begins differentiating also at qualitative level. The cichlids show presence of a large conserved core of taxa and a small set of core OTUs (average 13–15%), remarkably stable also in captivity, and putatively favoured by both restricted microbial transmission among related hosts (putatively enhanced by mouthbrooding behavior) and common host constraints. This study sets the basis for a future large-scale investigation of the gut microbiota of cichlids and its adaptation in the process of the host adaptive radiation. PMID:25978452

  1. Quaternary ostracodes and molluscs from the Rukwa Basin (Tanzania) and their evolutionary and paleobiogeographic implications

    USGS Publications Warehouse

    Cohen, Andrew S.; Van Bocxlaer, Bert; Todd, Jonathan A.; McGlue, Michael; Michel, Ellinor; Nkotagu, Hudson H.; Grove, A.T.; Delvaux, Damien

    2013-01-01

    Much of the spectacular biodiversity of the African Great Lakes is endemic to single lake basins so that the margins of these basins or their lakes coincide with biogeographic boundaries. Longstanding debate surrounds the evolution of these endemic species, the stability of bioprovinces, and the exchange of faunas between them over geologic time as the rift developed. Because these debates are currently unsettled, we are uncertain of how much existing distribution patterns are determined by modern hydrological barriers versus reflecting past history. This study reports on late Quaternary fossils from the Rukwa Basin and integrates geological and paleoecological data to explore faunal exchange between freshwater bioprovinces, in particular with Lake Tanganyika. Lake Rukwa's water level showed large fluctuations over the last 25 ky, and for most of this period the lake contained large habitat diversity, with different species assemblages and taphonomic controls along its northern and southern shores. Comparison of fossil and modern invertebrate assemblages suggests faunal persistence through the Last Glacial Maximum, but with an extirpation event that occurred in the last 5 ky. Some of the molluscs and ostracodes studied here are closely related to taxa (or part of clades) that are currently endemic to Lake Tanganyika, but others testify to wider and perhaps older faunal exchanges between the Rukwa bioprovince and those of Lake Malawi and the Upper Congo (in particular Lake Mweru). The Rukwa Basin has a long history of rifting and lacustrine conditions and, at least temporarily, its ecosystems appear to have functioned as satellites to Lake Tanganyika in which intralacustrine speciation occurred. Paleontological studies of the Rukwa faunas are particularly relevant because of the basin's important role in the late Cenozoic biogeography of tropical Africa, and because many of the molecular traces potentially revealing this history would have been erased in the late

  2. Duke Engineering explores huge African Power Project

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Newman, P.

    1994-10-14

    Duke Engineering & Services and the African Republic of Uganda have entered into a memorandum of understanding to explore the feasibility of installing one or more hydropower plants along the Nile River and building a 2,000 mile transmission line through southern Africa. The project`s participants say they envision a southern African electricity grid connecting all countries in the region. A team comprised of officials from DE&S, Edlow and SAD-ELEC will conduct a six-month, two-part study on the feasibility of linking the existing grid system in the region. The first part of the study will look at the feasibility of installingmore » one or more independent hydropower plants along the Nile and other rivers in Uganda. The second part will explore the design, construction and operation of a transmission system to interconnect Uganda, through neighboring countries to the south and east, to the Republic of South Africa. The site for the proposed hydroelectric plant will determine the route of the transmission line.« less

  3. Juxtaposition of Neoproterozoic units along the Baruda - Tulu Dimtu shear-belt in the East African Orogen of western Ethiopia

    USGS Publications Warehouse

    Braathen, A.; Grenne, Tor; Selassie, M.G.; Worku, T.

    2001-01-01

    Amalgamation of East and West Gondwanaland during the Neoproterozoic East African Orogen is recorded by several shear-belts or 'suture zones', some of which are associated with ultramafic and mafic complexes that have been interpreted as ophiolite fragments. The Baruda shear-belt is a major structure of this type that belongs to the N-S trending Barka - Tulu Dimtu zone. The significance of this zone has been studied within a transect in western Ethiopia which covers a variety of metasedimentary and metavolcanic sequences, ultramafic rocks and synkinematic intrusive complexes. All rocks participated in the regional D1 event as reflected in a penetrative steep foliation in supracrustal rocks and marginal parts of the intrusions. Highly strained rocks contain a stretching lineation that plunge to the east. The several-km thick Baruda shear-belt, comprising mylonitic supracrustal and plutonic rocks including mafic-ultramafic mega-lenses, is the most prominent expression of this event. Shear-sense indicators demonstrate top-to-the-west shear. Subsequent D2 deformation is recorded in 2-300 m wide, N-S striking, subvertical shear-zones with subhorizontal stretching lineation relatable to sinistral transcurrent movements. Our data indicate that rock units on either side of the Baruda shear-belt are related, rather than being exotic to each other as implied in suture zone models, since there is no major lithologic or metamorphic difference, geochemical data on metavolcanic rocks and pre-tectonic intrusions suggest a paleotectonic link, and style and extent of deformation is similar across the shear-belt. A tentative model for the transect suggests an arc and back-arc setting which experienced later continental collision and tectonic shortening. The initial setting was that of a shallow marine platform characterised by carbonates and sandstones, which covered extensive areas prior to break-up of a pre-existing supercontinent. Continental convergence is first recorded in high

  4. From Lake Malawi Drilling: East African Climate May Have Caused Major Evolutionary Turnover in Mammalian Species During MIS 14

    NASA Astrophysics Data System (ADS)

    Johnson, Thomas; Werne, Josef

    2016-04-01

    interglacial periods alternating with relatively cool, dry glacial periods. One of the coldest, and most prolonged dry periods of the last million years in the Malawi basin occurred around 540 ka (MIS 14). This perturbation in the climate may have been a factor in the substantial mammalian extinctions and increased cranial capacity of Homo that occurred during this time. As more long-term, high-resolution histories of climate are recovered from the other great lakes of East Africa, we will be able to address key questions raised by the Malawi record, e.g., the extent of the rift valley that shifted to wetter conditions over the past million years, and whether MIS 14 was an unusually cold ice age throughout the region. Future drilling campaigns on the East African Great Lakes will offer unique opportunities to understand the changing landscape where our ancestors evolved, migrated, and advanced their cultures.

  5. African Lineage Brucella melitensis Isolates from Omani Livestock.

    PubMed

    Foster, Jeffrey T; Walker, Faith M; Rannals, Brandy D; Hussain, M Hammad; Drees, Kevin P; Tiller, Rebekah V; Hoffmaster, Alex R; Al-Rawahi, Abdulmajeed; Keim, Paul; Saqib, Muhammad

    2017-01-01

    Brucellosis is a common livestock disease in the Middle East and North Africa, but remains poorly described in the region both genetically and epidemiologically. Traditionally found in goats and sheep, Brucella melitensis is increasingly recognized as infecting camels. Most studies of brucellosis in camels to date have focused on serological surveys, providing only limited understanding of the molecular epidemiology of circulating strains. We genotyped B. melitensis isolates from Omani camels using whole genome SNP assays and VNTRs to provide context for regional brucellosis cases. We identified a lineage of B. melitensis circulating in camels as well as in goats, sheep, and cattle in Oman. This lineage is genetically distinct from most genotypes from the Arabian Peninsula and from isolates from much of the rest of the Middle East. We then developed diagnostic assays that rapidly identify strains from this lineage. In analyses of genotypes from throughout the region, Omani isolates were genetically most closely related to strains from brucellosis cases in humans and livestock in North Africa. Our findings suggest an African origin for B. melitensis in Oman that has likely occurred through the trade of infected livestock. Moreover, African lineages of B. melitensis appear to be undersampled and consequently are underrepresented in genetic databases for Brucella . As we begin to more fully understand global genomic diversity of B. melitensis , finding and characterizing these unique but widespread lineages is essential. We predict that increased sampling of humans and livestock in Africa will reveal little known diversity in this important zoonotic pathogen.

  6. Early- to Mid-Holocene hydroclimate shifts in tropical East Africa: the multi-proxy sediment record from Lake Rutundu, Kenya

    NASA Astrophysics Data System (ADS)

    De Cort, Gijs; Creutz, Mike; Barao, Lucia; Conley, Daniel; Haug, Gerald; Bodé, Samuel; Blaauw, Maarten; Engstrom, Dan; Verschuren, Dirk

    2015-04-01

    Following the generally arid conditions of the Last Glacial Maximum (LGM), a large part of the African continent experienced the Early to Mid-Holocene as a much more humid period than today. This so-called African Humid Period (AHP) coincided with high summertime insolation over the Northern Hemisphere subtropics, causing invigorated monsoons to create moist conditions over the northern parts of the continent. Similarly, equatorial and even low-latitude southeastern Africa experienced a wetter climate due to the post-glacial increase in atmospheric greenhouse gasses ultimately leading to altered Atlantic and Indian Ocean monsoon dynamics. The timing and abruptness of the onset and ending of the AHP in the different regions of the continent have been the subject of major discussion. On the other hand, shorter-lived climate fluctuations within the AHP have received much less attention, due to a scarcity of well-dated, high-resolution African paleoclimate records spanning the entire Holocene. In this study we used the sediment record of Lake Rutundu, a high-altitude crater lake on Mount Kenya, to document multidecadal to millennial-scale hydroclimate variability on the East African equator from the LGM to the present. A multiproxy approach combining core-surface scanning techniques (magnetic susceptibility, X-ray fluorescence) and close-interval bulk-sediment analyses (organic matter and biogenic Si content, grain size, organic δ15N and δ13C) resulted in a high-resolution record firmly anchored in time by an age model based on 210Pb dating and sixteen calibrated radiocarbon ages. This new Lake Rutundu hydroclimate record confirms that moister conditions following the LGM returned to East Africa ca.16 kyr BP, and it contains a perfectly timed Younger Dryas episode (12.8-11.5 kyr BP) of intermittent drought. We find that the Early- to Mid-Holocene period, which in African records is often described as uniformly wet, was in fact punctuated by three distinct, century

  7. In/dependent Collaborations: Perceptions and Experiences of African Scientists in Transnational HIV Research

    PubMed Central

    Moyi Okwaro, Ferdinand; Geissler, P. W.

    2015-01-01

    This article examines collaboration in transnational medical research from the viewpoint of African scientists working in partnerships with northern counterparts. It draws on ethnographic fieldwork in an HIV laboratory of an East African state university, with additional data from interviews with scientists working in related research institutions. Collaboration is today the preferred framework for the mechanisms by which northern institutions support research in the south. The concept signals a shift away from the legacy of unequal (post‐) colonial power relations, although, amid persisting inequalities, the rhetorical emphasis on equality might actually hinder critical engagement with conflicts of interest and injustice. To collaborate, African scientists engage various strategies: They establish a qualified but flexible, non‐permanent workforce, diversify collaborators and research areas, source complementary funding to assemble infrastructures, and maintain prospective research populations to attract transnational clinical trials. Through this labor of collaboration, they sustain their institutions under prevailing conditions of scarcity. PMID:25800667

  8. Chad Genetic Diversity Reveals an African History Marked by Multiple Holocene Eurasian Migrations.

    PubMed

    Haber, Marc; Mezzavilla, Massimo; Bergström, Anders; Prado-Martinez, Javier; Hallast, Pille; Saif-Ali, Riyadh; Al-Habori, Molham; Dedoussis, George; Zeggini, Eleftheria; Blue-Smith, Jason; Wells, R Spencer; Xue, Yali; Zalloua, Pierre A; Tyler-Smith, Chris

    2016-12-01

    Understanding human genetic diversity in Africa is important for interpreting the evolution of all humans, yet vast regions in Africa, such as Chad, remain genetically poorly investigated. Here, we use genotype data from 480 samples from Chad, the Near East, and southern Europe, as well as whole-genome sequencing from 19 of them, to show that many populations today derive their genomes from ancient African-Eurasian admixtures. We found evidence of early Eurasian backflow to Africa in people speaking the unclassified isolate Laal language in southern Chad and estimate from linkage-disequilibrium decay that this occurred 4,750-7,200 years ago. It brought to Africa a Y chromosome lineage (R1b-V88) whose closest relatives are widespread in present-day Eurasia; we estimate from sequence data that the Chad R1b-V88 Y chromosomes coalesced 5,700-7,300 years ago. This migration could thus have originated among Near Eastern farmers during the African Humid Period. We also found that the previously documented Eurasian backflow into Africa, which occurred ∼3,000 years ago and was thought to be mostly limited to East Africa, had a more westward impact affecting populations in northern Chad, such as the Toubou, who have 20%-30% Eurasian ancestry today. We observed a decline in heterozygosity in admixed Africans and found that the Eurasian admixture can bias inferences on their coalescent history and confound genetic signals from adaptation and archaic introgression. Copyright © 2016 The Author(s). Published by Elsevier Inc. All rights reserved.

  9. Rhipicephalus appendiculatus ticks transmit theileria parva from persistently infected cattle in the absence of detectable parasitemia: implications for East Coast fever epidemiology

    USDA-ARS?s Scientific Manuscript database

    East Coast fever is a devastating disease of cattle caused by infection with the protozoan parasite, Theileria parva. Transmitted by the three-host tick, Rhipicephalus appendiculatus, the disease is present in 11 sub-Saharan African countries and is a major constraint to improvement of livestock pro...

  10. Racism in African Children's Literature: A Critique of Eric Campbell's "The Year of the Leopard Song."

    ERIC Educational Resources Information Center

    Osa, Osayimwense

    Eric Campbell, an English teacher, spent most of his working life in New Guinea and in East Africa, where he lived in the shadow of Kilimanjaro. He now lives in England and writes about Africa. People could expect an objective, and perhaps, a dispassionate account or depiction of African children and adults--their individual lives and…

  11. Modelling the role of groundwater hydro-refugia in East African hominin evolution and dispersal

    PubMed Central

    Cuthbert, M. O.; Gleeson, T.; Reynolds, S. C.; Bennett, M. R.; Newton, A. C.; McCormack, C. J.; Ashley, G. M.

    2017-01-01

    Water is a fundamental resource, yet its spatiotemporal availability in East Africa is poorly understood. This is the area where most hominin first occurrences are located, and consequently the potential role of water in hominin evolution and dispersal remains unresolved. Here, we show that hundreds of springs currently distributed across East Africa could function as persistent groundwater hydro-refugia through orbital-scale climate cycles. Groundwater buffers climate variability according to spatially variable groundwater response times determined by geology and topography. Using an agent-based model, grounded on the present day landscape, we show that groundwater availability would have been critical to supporting isolated networks of hydro-refugia during dry periods when potable surface water was scarce. This may have facilitated unexpected variations in isolation and dispersal of hominin populations in the past. Our results therefore provide a new environmental framework in which to understand how patterns of taxonomic diversity in hominins may have developed. PMID:28556825

  12. Modelling the role of groundwater hydro-refugia in East African hominin evolution and dispersal

    NASA Astrophysics Data System (ADS)

    Cuthbert, M. O.; Gleeson, T.; Reynolds, S. C.; Bennett, M. R.; Newton, A. C.; McCormack, C. J.; Ashley, G. M.

    2017-05-01

    Water is a fundamental resource, yet its spatiotemporal availability in East Africa is poorly understood. This is the area where most hominin first occurrences are located, and consequently the potential role of water in hominin evolution and dispersal remains unresolved. Here, we show that hundreds of springs currently distributed across East Africa could function as persistent groundwater hydro-refugia through orbital-scale climate cycles. Groundwater buffers climate variability according to spatially variable groundwater response times determined by geology and topography. Using an agent-based model, grounded on the present day landscape, we show that groundwater availability would have been critical to supporting isolated networks of hydro-refugia during dry periods when potable surface water was scarce. This may have facilitated unexpected variations in isolation and dispersal of hominin populations in the past. Our results therefore provide a new environmental framework in which to understand how patterns of taxonomic diversity in hominins may have developed.

  13. Divergent pattern of nuclear genetic diversity across the range of the Afromontane Prunus africana mirrors variable climate of African highlands

    PubMed Central

    Kadu, Caroline A. C.; Konrad, Heino; Schueler, Silvio; Muluvi, Geoffrey M.; Eyog-Matig, Oscar; Muchugi, Alice; Williams, Vivienne L.; Ramamonjisoa, Lolona; Kapinga, Consolatha; Foahom, Bernard; Katsvanga, Cuthbert; Hafashimana, David; Obama, Crisantos; Geburek, Thomas

    2013-01-01

    Background and Aims Afromontane forest ecosystems share a high similarity of plant and animal biodiversity, although they occur mainly on isolated mountain massifs throughout the continent. This resemblance has long provoked questions on former wider distribution of Afromontane forests. In this study Prunus africana (one of the character trees of Afromontane forests) is used as a model for understanding the biogeography of this vegetation zone. Methods Thirty natural populations from nine African countries covering a large part of Afromontane regions were analysed using six nuclear microsatellites. Standard population genetic analysis as well as Bayesian and maximum likelihood models were used to infer genetic diversity, population differentiation, barriers to gene flow, and recent and all migration among populations. Key Results Prunus africana exhibits strong divergence among five main Afromontane regions: West Africa, East Africa west of the Eastern Rift Valley (ERV), East Africa east of the ERV, southern Africa and Madagascar. The strongest divergence was evident between Madagascar and continental Africa. Populations from West Africa showed high similarity with East African populations west of the ERV, whereas populations east of the ERV are closely related to populations of southern Africa, respectively. Conclusions The observed patterns indicate divergent population history across the continent most likely associated to Pleistocene changes in climatic conditions. The high genetic similarity between populations of West Africa with population of East Africa west of the ERV is in agreement with faunistic and floristic patterns and provides further evidence for a historical migration route. Contrasting estimates of recent and historical gene flow indicate a shift of the main barrier to gene flow from the Lake Victoria basin to the ERV, highlighting the dynamic environmental and evolutionary history of the region. PMID:23250908

  14. Genomic insights into the origin of farming in the ancient Near East.

    PubMed

    Lazaridis, Iosif; Nadel, Dani; Rollefson, Gary; Merrett, Deborah C; Rohland, Nadin; Mallick, Swapan; Fernandes, Daniel; Novak, Mario; Gamarra, Beatriz; Sirak, Kendra; Connell, Sarah; Stewardson, Kristin; Harney, Eadaoin; Fu, Qiaomei; Gonzalez-Fortes, Gloria; Jones, Eppie R; Roodenberg, Songül Alpaslan; Lengyel, György; Bocquentin, Fanny; Gasparian, Boris; Monge, Janet M; Gregg, Michael; Eshed, Vered; Mizrahi, Ahuva-Sivan; Meiklejohn, Christopher; Gerritsen, Fokke; Bejenaru, Luminita; Blüher, Matthias; Campbell, Archie; Cavalleri, Gianpiero; Comas, David; Froguel, Philippe; Gilbert, Edmund; Kerr, Shona M; Kovacs, Peter; Krause, Johannes; McGettigan, Darren; Merrigan, Michael; Merriwether, D Andrew; O'Reilly, Seamus; Richards, Martin B; Semino, Ornella; Shamoon-Pour, Michel; Stefanescu, Gheorghe; Stumvoll, Michael; Tönjes, Anke; Torroni, Antonio; Wilson, James F; Yengo, Loic; Hovhannisyan, Nelli A; Patterson, Nick; Pinhasi, Ron; Reich, David

    2016-08-25

    We report genome-wide ancient DNA from 44 ancient Near Easterners ranging in time between ~12,000 and 1,400 bc, from Natufian hunter-gatherers to Bronze Age farmers. We show that the earliest populations of the Near East derived around half their ancestry from a 'Basal Eurasian' lineage that had little if any Neanderthal admixture and that separated from other non-African lineages before their separation from each other. The first farmers of the southern Levant (Israel and Jordan) and Zagros Mountains (Iran) were strongly genetically differentiated, and each descended from local hunter-gatherers. By the time of the Bronze Age, these two populations and Anatolian-related farmers had mixed with each other and with the hunter-gatherers of Europe to greatly reduce genetic differentiation. The impact of the Near Eastern farmers extended beyond the Near East: farmers related to those of Anatolia spread westward into Europe; farmers related to those of the Levant spread southward into East Africa; farmers related to those of Iran spread northward into the Eurasian steppe; and people related to both the early farmers of Iran and to the pastoralists of the Eurasian steppe spread eastward into South Asia.

  15. Genomic insights into the origin of farming in the ancient Near East

    PubMed Central

    Lazaridis, Iosif; Nadel, Dani; Rollefson, Gary; Merrett, Deborah C.; Rohland, Nadin; Mallick, Swapan; Fernandes, Daniel; Novak, Mario; Gamarra, Beatriz; Sirak, Kendra; Connell, Sarah; Stewardson, Kristin; Harney, Eadaoin; Fu, Qiaomei; Gonzalez-Fortes, Gloria; Jones, Eppie R.; Roodenberg, Songül Alpaslan; Lengyel, György; Bocquentin, Fanny; Gasparian, Boris; Monge, Janet M.; Gregg, Michael; Eshed, Vered; Mizrahi, Ahuva-Sivan; Meiklejohn, Christopher; Gerritsen, Fokke; Bejenaru, Luminita; Blüher, Matthias; Campbell, Archie; Cavalleri, Gianpiero; Comas, David; Froguel, Philippe; Gilbert, Edmund; Kerr, Shona M.; Kovacs, Peter; Krause, Johannes; McGettigan, Darren; Merrigan, Michael; Merriwether, D. Andrew; O'Reilly, Seamus; Richards, Martin B.; Semino, Ornella; Shamoon-Pour, Michel; Stefanescu, Gheorghe; Stumvoll, Michael; Tönjes, Anke; Torroni, Antonio; Wilson, James F.; Yengo, Loic; Hovhannisyan, Nelli A.; Patterson, Nick; Pinhasi, Ron; Reich, David

    2016-01-01

    We report genome-wide ancient DNA from 44 ancient Near Easterners ranging in time between ~12,000-1,400 BCE, from Natufian hunter-gatherers to Bronze Age farmers. We show that the earliest populations of the Near East derived around half their ancestry from a ‘Basal Eurasian’ lineage that had little if any Neanderthal admixture and that separated from other non-African lineages prior to their separation from each other. The first farmers of the southern Levant (Israel and Jordan) and Zagros Mountains (Iran) were strongly genetically differentiated, and each descended from local hunter-gatherers. By the time of the Bronze Age, these two populations and Anatolian-related farmers had mixed with each other and with the hunter-gatherers of Europe to drastically reduce genetic differentiation. The impact of the Near Eastern farmers extended beyond the Near East: farmers related to those of Anatolia spread westward into Europe; farmers related to those of the Levant spread southward into East Africa; farmers related to those from Iran spread northward into the Eurasian steppe; and people related to both the early farmers of Iran and to the pastoralists of the Eurasian steppe spread eastward into South Asia. PMID:27459054

  16. First Report of the East-Central South African Genotype of Chikungunya Virus in Rio de Janeiro, Brazil

    PubMed Central

    Souza, Thiara Manuele Alves; Azeredo, Elzinandes Leal; Badolato-Corrêa, Jessica; Damasco, Paulo Vieira; Santos, Carla; Petitinga-Paiva, Fabienne; Nunes, Priscila Conrado Guerra; Barbosa, Luciana Santos; Cipitelli, Márcio Costa; Chouin-Carneiro, Thais; Faria, Nieli Rodrigues Costa; Nogueira, Rita Maria Ribeiro; de Bruycker-Nogueira, Fernanda; dos Santos, Flavia Barreto

    2017-01-01

    Background: Chikungunya virus (CHIKV) is an arbovirus that causes an acute febrile syndrome with a severe and debilitating arthralgia. In Brazil, the Asian and East-Central South African (ECSA) genotypes are circulating in the north and northeast of the country, respectively. In 2015, the first autochthonous cases in Rio de Janeiro, Brazil were reported but until now the circulating strains have not been characterized. Therefore, we aimed here to perform the molecular characterization and phylogenetic analysis of CHIKV strains circulating in the 2016 outbreak occurred in the municipality of Rio de Janeiro. Methods: The cases analyzed in this study were collected at a private Hospital, from April 2016 to May 2016, during the chikungunya outbreak in Rio de Janeiro, Brazil. All cases were submitted to the Real Time RT-PCR for CHIKV genome detection and to anti-CHIKV IgM ELISA. Chikungunya infection was laboratorially confirmed by at least one diagnostic method and, randomly selected positive cases (n=10), were partially sequenced (CHIKV E1 gene) and analyzed. Results: The results showed that all the samples grouped in ECSA genotype branch and the molecular characterization of the fragment did not reveal the A226V mutation in the Rio de Janeiro strains analyzed, but a K211T amino acid substitution was observed for the first time in all samples and a V156A substitution in two of ten samples. Conclusions: Phylogenetic analysis and molecular characterization reveals the circulation of the ECSA genotype of CHIKV in the city of Rio de Janeiro, Brazil and two amino acids substitutions (K211T and V156A) exclusive to the CHIKV strains obtained during the 2016 epidemic, were reported. PMID:28286701

  17. Introduction of East African cassava mosaic Zanzibar virus to Oman harks back to "Zanzibar, the capital of Oman".

    PubMed

    Khan, Akhtar J; Akhtar, Sohail; Al-Matrushi, Abdulrahman M; Fauquet, Claude M; Briddon, Rob W

    2013-02-01

    Cassava mosaic disease (CMD) is the most devastating disease of the subsistence crop cassava (Manihot esculenta) across Africa and the Indian subcontinent. The disease is caused by viruses of the genus Begomovirus (family Geminiviridae)-seven species have been identified so far. The Sultanate of Oman is unusual among countries in Arabia in growing cassava on a small scale for local consumption. During a recent survey in A'Seeb wilayat of Muscat governorate, Oman, cassava plants were identified with symptoms typical of CMD. A begomovirus, East African cassava mosaic Zanzibar virus (EACMZV), was isolated from symptomatic plants. This virus was previously only known to occur in Zanzibar and Kenya. During the 19th Century, Zanzibar was governed by Oman and was so important that the Sultan of Oman moved his capital there from Muscat. After a period of colonial rule, the governing Arab elite was overthrown, following independence in the 1960s, and many expatriate Omanis returned to their homeland. Having gained a liking for the local Zanzibar cuisine, it appears that returning Omanis did not wish to do without dishes made from one particular favorite, cassava. Consequently, they carried planting material back to Oman for cultivation in their kitchen gardens. The evidence suggests that this material harbored EACMZV. Recently, Oman has been shown to be a nexus for geminiviruses and their associated satellites from diverse geographic origins. With their propensity to recombine, a major mechanism for evolution of geminiviruses, and the fact that Oman (and several other Arabian countries) is a major hub for trade and travel by air and sea, the possibility of onward spread is worrying.

  18. Coastal East Africa and the Western Indian Ocean: Long-Distance Trade, Empire, Migration, and Regional Unity, 1750-1970

    ERIC Educational Resources Information Center

    Gilbert, Erik

    2002-01-01

    In this article, the author looks closely at the recent history of the East African coast and the Swahili people who live there. In doing so he hopes to highlight the inadequacy of the area studies/continentalist approach to studying and teaching the Swahili and to propose a different way of considering their past. His contention is that one can…

  19. Mediterranean summer climate and the importance of Middle-East Topography

    NASA Astrophysics Data System (ADS)

    Simpson, Isla; Seager, Richard; Shaw, Tiffany; Ting, Mingfang

    2015-04-01

    In summer, the atmospheric circulation over the Mediterranean is characterized by localized intense subsidence and low level northerlies over the central- to eastern portion of the basin. Here, simulations with the Community Atmosphere Model, version 5 are used to investigate the influence of the elevated terrain of North Africa and the Middle East on this summertime circulation. This builds on previous work that recognized a role for North African topography in localizing the Mediterranean subsidence. By flattening the two regions of elevated terrain in the model it is demonstrated that, while they both conspire to produce about 30% of the summertime subsidence, contrary to previous work, the mountains of the Middle-East dominate in this topographic contribution by far. This topography, consisting primarily of the Zagros Mountain range, alters the circulation throughout the depth of the troposphere over the Mediterranean, and further East. The model results suggest that about 20% of the Mediterranean summertime moisture deficit can be attributed to this mountain induced circulation. This topography, therefore, plays an important role in the climate of the Mediterranean and the large scale circulation over the rest of Eurasia during the summer. Further stationary wave modelling reveals that the mountain influence is produced via mechanical forcing of the flow. The greatest influence of the topography occurs when the low level incident flow is easterly, as happens during the summer, primarily due to the presence of condensational heating over Asia. During other seasons, when the low level incident flow is westerly, the influence of Middle-East topography on the Mediterranean is negligible.

  20. Spatial phylodynamics of HIV-1 epidemic emergence in east Africa

    PubMed Central

    Gray, Rebecca R.; Tatem, Andrew J.; Lamers, Susanna; Hou, Wei; Laeyendecker, Oliver; Serwadda, David; Sewankambo, Nelson; Gray, Ronald H.; Wawer, Maria; Quinn, Thomas C.; Goodenow, Maureen M.; Salemi, Marco

    2009-01-01

    Design We sought to investigate the evolutionary and historical reasons for the different epidemiological patterns of HIV-1 in the early epidemic. In order to characterize the demographic history of HIV-1 subtypes A and D in east Africa, we examined molecular epidemiology, geographical and historical data. Methodology We employed high-resolution phylodynamics to investigate the introduction of HIV-1A and D into east Africa, the geographic trends of viral spread, and the demographic growth of each subtype. We also used geographic information system data to investigate human migration trends, population growth, and human mobility. Results HIV-1A and D were introduced into east Africa after 1950 and spread exponentially during the 1970s, concurrent with eastward expansion. Spatiotemporal data failed to explain the establishment and spread of HIV based on urban population growth and migration. The low prevalence of the virus in the Democratic Republic of Congo before and after the emergence of the pandemic was, however, consistent with regional accessibility data, highlighting the difficulty in travel between major population centers in central Africa. In contrast, the strong interconnectivity between population centers across the east African region since colonial times has likely fostered the rapid growth of the epidemic in this locale. Conclusion This study illustrates how phylodynamic analysis of pathogens informed by geospatial data can provide a more holistic and evidence-based interpretation of past epidemics. We advocate that this ‘landscape phylodynamics’ approach has the potential to provide a framework both to understand epidemics' spread and to design optimal intervention strategies. PMID:19644346

  1. Holocene phreatomagmatic eruptions alongside the densely populated northern shoreline of Lake Kivu, East African Rift: timing and hazard implications

    NASA Astrophysics Data System (ADS)

    Poppe, Sam; Smets, Benoît; Fontijn, Karen; Rukeza, Montfort Bagalwa; De Marie Fikiri Migabo, Antoine; Milungu, Albert Kyambikwa; Namogo, Didier Birimwiragi; Kervyn, François; Kervyn, Matthieu

    2016-11-01

    The Virunga Volcanic Province (VVP) represents the most active zone of volcanism in the western branch of the East African Rift System. While the VVP's two historically active volcanoes, Nyamulagira and Nyiragongo, have built scoria cones and lava flows in the adjacent lava fields, several small phreatomagmatic eruptive centers lie along Lake Kivu's northern shoreline, highlighting the potential for explosive magma-water interaction. Their presence in the densely urbanized Sake-Goma-Gisenyi area necessitates an assessment of their eruptive mechanisms and chronology. Some of these eruptive centers possess multiple vents, and depositional contacts suggest distinct eruptive phases within a single structure. Depositional facies range from polymict tuff breccia to tuff and loose lapilli, often impacted by blocks and volcanic bombs. Along with the presence of dilute pyroclastic density current (PDC) deposits, indicators of magma-water interaction include the presence of fine palagonitized ash, ash aggregates, cross-bedding, and ballistic impact sags. We estimate that at least 15 phreatomagmatic eruptions occurred in the Holocene, during which Lake Kivu rose to its current water level. Radiocarbon dates of five paleosols in the top of volcanic tuff deposits range between ˜2500 and ˜150 cal. year bp and suggest centennial- to millennial-scale recurrence of phreatomagmatic activity. A vast part of the currently urbanized zone on the northern shoreline of Lake Kivu was most likely impacted by products from phreatomagmatic activity, including PDC events, during the Late Holocene, highlighting the need to consider explosive magma-water interaction as a potential scenario in future risk assessments.

  2. Population genetics of the potentially invasive African fruit fly species, Ceratitis rosa and Ceratitis fasciventris (Diptera: Tephritidae).

    PubMed

    Baliraine, F N; Bonizzoni, M; Guglielmino, C R; Osir, E O; Lux, S A; Mulaa, F J; Gomulski, L M; Zheng, L; Quilici, S; Gasperi, G; Malacrida, A R

    2004-03-01

    A set of 10 microsatellite markers was used to survey the levels of genetic variability and to analyse the genetic aspects of the population dynamics of two potentially invasive pest fruit fly species, Ceratitis rosa and C. fasciventris, in Africa. The loci were derived from the closely related species, C. capitata. The degree of microsatellite polymorphism in C. rosa and C. fasciventris was extensive and comparable to that of C. capitata. In C. rosa, the evolution of microsatellite polymorphism in its distribution area reflects the colonization history of this species. The mainland populations are more polymorphic than the island populations. Low levels of differentiation were found within the Africa mainland area, while greater levels of differentiation affect the islands. Ceratitis fasciventris is a central-east African species. The microsatellite data over the Uganda/Kenya spatial scale suggest a recent expansion and possibly continuing gene flow within this area. The microsatellite variability data from C. rosa and C. fasciventris, together with those of C. capitata, support the hypothesis of an east African origin of the Ceratitis spp.

  3. Genome-wide Association Analysis of Blood-Pressure Traits in African-Ancestry Individuals Reveals Common Associated Genes in African and Non-African Populations

    PubMed Central

    Franceschini, Nora; Fox, Ervin; Zhang, Zhaogong; Edwards, Todd L.; Nalls, Michael A.; Sung, Yun Ju; Tayo, Bamidele O.; Sun, Yan V.; Gottesman, Omri; Adeyemo, Adebawole; Johnson, Andrew D.; Young, J. Hunter; Rice, Ken; Duan, Qing; Chen, Fang; Li, Yun; Tang, Hua; Fornage, Myriam; Keene, Keith L.; Andrews, Jeanette S.; Smith, Jennifer A.; Faul, Jessica D.; Guangfa, Zhang; Guo, Wei; Liu, Yu; Murray, Sarah S.; Musani, Solomon K.; Srinivasan, Sathanur; Velez Edwards, Digna R.; Wang, Heming; Becker, Lewis C.; Bovet, Pascal; Bochud, Murielle; Broeckel, Ulrich; Burnier, Michel; Carty, Cara; Chasman, Daniel I.; Ehret, Georg; Chen, Wei-Min; Chen, Guanjie; Chen, Wei; Ding, Jingzhong; Dreisbach, Albert W.; Evans, Michele K.; Guo, Xiuqing; Garcia, Melissa E.; Jensen, Rich; Keller, Margaux F.; Lettre, Guillaume; Lotay, Vaneet; Martin, Lisa W.; Moore, Jason H.; Morrison, Alanna C.; Mosley, Thomas H.; Ogunniyi, Adesola; Palmas, Walter; Papanicolaou, George; Penman, Alan; Polak, Joseph F.; Ridker, Paul M.; Salako, Babatunde; Singleton, Andrew B.; Shriner, Daniel; Taylor, Kent D.; Vasan, Ramachandran; Wiggins, Kerri; Williams, Scott M.; Yanek, Lisa R.; Zhao, Wei; Zonderman, Alan B.; Becker, Diane M.; Berenson, Gerald; Boerwinkle, Eric; Bottinger, Erwin; Cushman, Mary; Eaton, Charles; Nyberg, Fredrik; Heiss, Gerardo; Hirschhron, Joel N.; Howard, Virginia J.; Karczewsk, Konrad J.; Lanktree, Matthew B.; Liu, Kiang; Liu, Yongmei; Loos, Ruth; Margolis, Karen; Snyder, Michael; Go, Min Jin; Kim, Young Jin; Lee, Jong-Young; Jeon, Jae-Pil; Kim, Sung Soo; Han, Bok-Ghee; Cho, Yoon Shin; Sim, Xueling; Tay, Wan Ting; Ong, Rick Twee Hee; Seielstad, Mark; Liu, Jian Jun; Aung, Tin; Wong, Tien Yin; Teo, Yik Ying; Tai, E. Shyong; Chen, Chien-Hsiun; Chang, Li-ching; Chen, Yuan-Tsong; Wu, Jer-Yuarn; Kelly, Tanika N.; Gu, Dongfeng; Hixson, James E.; Sung, Yun Ju; He, Jiang; Tabara, Yasuharu; Kokubo, Yoshihiro; Miki, Tetsuro; Iwai, Naoharu; Kato, Norihiro; Takeuchi, Fumihiko; Katsuya, Tomohiro; Nabika, Toru; Sugiyama, Takao; Zhang, Yi; Huang, Wei; Zhang, Xuegong; Zhou, Xueya; Jin, Li; Zhu, Dingliang; Psaty, Bruce M.; Schork, Nicholas J.; Weir, David R.; Rotimi, Charles N.; Sale, Michele M.; Harris, Tamara; Kardia, Sharon L.R.; Hunt, Steven C.; Arnett, Donna; Redline, Susan; Cooper, Richard S.; Risch, Neil J.; Rao, D.C.; Rotter, Jerome I.; Chakravarti, Aravinda; Reiner, Alex P.; Levy, Daniel; Keating, Brendan J.; Zhu, Xiaofeng

    2013-01-01

    High blood pressure (BP) is more prevalent and contributes to more severe manifestations of cardiovascular disease (CVD) in African Americans than in any other United States ethnic group. Several small African-ancestry (AA) BP genome-wide association studies (GWASs) have been published, but their findings have failed to replicate to date. We report on a large AA BP GWAS meta-analysis that includes 29,378 individuals from 19 discovery cohorts and subsequent replication in additional samples of AA (n = 10,386), European ancestry (EA) (n = 69,395), and East Asian ancestry (n = 19,601). Five loci (EVX1-HOXA, ULK4, RSPO3, PLEKHG1, and SOX6) reached genome-wide significance (p < 1.0 × 10−8) for either systolic or diastolic BP in a transethnic meta-analysis after correction for multiple testing. Three of these BP loci (EVX1-HOXA, RSPO3, and PLEKHG1) lack previous associations with BP. We also identified one independent signal in a known BP locus (SOX6) and provide evidence for fine mapping in four additional validated BP loci. We also demonstrate that validated EA BP GWAS loci, considered jointly, show significant effects in AA samples. Consequently, these findings suggest that BP loci might have universal effects across studied populations, demonstrating that multiethnic samples are an essential component in identifying, fine mapping, and understanding their trait variability. PMID:23972371

  4. Satellite tracking of two Lesser Spotted Eagles, Aquila pomarina, migrating from Namibia

    USGS Publications Warehouse

    Meyburg, B.-U.; Ellis, D.H.; Meyburg, C.; Mendelsohn, J.M.; Scheller, W.

    2001-01-01

    One immature and one subadult Lesser Spotted Eagle, Aquila pomarina, were followed by satellite telemetry from their nonbreeding areas in Namibia. Both birds were fitted with transmitters (PTTs) in February 1994 and tracked, the immature for six months and three weeks, the subadult for eight months and two weeks, over distances of 10 084 and 16 773 km, respectively. During their time in Namibia both birds' movements were in response to good local rainfall. The immature eagle left Namibia at the end of February, the subadult at the end of March. They flew to their respective summer quarters in Hungary and the Ukraine, arriving there 2.5 and 1.5 months later than the breeding adults. The immature eagle took over two months longer on the homeward journey than a breeding male followed by telemetry in a previous study. On returning, the immature eagle followed the narrow flightpath through Africa used by other Lesser Spotted Eagles on their outward migration. It reached this corridor, which runs roughly between longitudes 31?? and 36?? East from Suez to Lake Tanganyika, veering from the shortest route in a direction east-northeast through Angola and Zambia to the southern end of Lake Tanganyika. The route taken by the subadult bird on its return migration differed markedly from that of all Lesser Spotted Eagles tracked to date, running further west through the Democratic Republic of Congo where, level with the equator, it flew over the eastern rainforest of that country. The outward migration, however, followed the same corridor and coincided in time with the migration of adults. [A German translation of the abstract is provided on p. 40.].

  5. African genetic diversity provides novel insights into evolutionary history and local adaptations.

    PubMed

    Choudhury, Ananyo; Aron, Shaun; Sengupta, Dhriti; Hazelhurst, Scott; Ramsay, Michèle

    2018-05-08

    Genetic variation and susceptibility to disease are shaped by human demographic history. We can now study the genomes of extant Africans and uncover traces of population migration, admixture, assimilation and selection by applying sophisticated computational algorithms. There are four major ethnolinguistic divisions among present day Africans: Hunter-gatherer populations in southern and central Africa; Nilo-Saharan speakers from north and northeast Africa; Afro-Asiatic speakers from east Africa; and Niger-Congo speakers who are the predominant ethnolinguistic group spread across most of sub-Saharan Africa. The enormous ethnolinguistic diversity in sub-Saharan African populations is largely paralleled by extensive genetic diversity and until a decade ago, little was known about the origins and divergence of these groups. Results from large-scale population genetic studies, and more recently whole genome sequence data, are unraveling the critical role of events like migration and admixture and environment factors including diet, infectious diseases and climatic conditions in shaping current population diversity. It is now possible to start providing quantitative estimates of divergence times, population size and dynamic processes that have affected populations and their genetic risk for disease. Finally, the availability of ancient genomes from Africa is providing historical insights of unprecedented depth. In this review, we highlight some key interpretations that have emerged from recent African genome studies.

  6. A Heated Debate: Evidence for Two Thermal Upwellings in East Africa

    NASA Astrophysics Data System (ADS)

    Rooney, T.; Herzberg, C.; Bastow, I.

    2008-12-01

    East African Cenozoic magmatism records the thermal influence of one or more long-lived mantle plumes. We present primary magma compositions, mantle potential temperatures (Tp), and mantle melt fractions using PRIMELT2 in order to examine the geographic and historical distribution of upper mantle thermal anomalies in East Africa. Regional magmatism can be divided into an early flood basalt phase in Ethiopia/Yemen (~30 Ma), a longer-lived episode of basaltic magmatism in Kenya and Southern Ethiopia (~45 to 23 Ma), and a more recent phase (~23 Ma to Present) that is coincidental with the development of the East African Rift (EAR). We have carefully selected a total of 54 samples from these time periods, excluding erroneous results derived from lavas with evidence of clinopyroxene fractionation or volatile rich and pyroxenitic sources. Our results show that elevated Tp in the Ethiopian/Yemen flood basalt province (Tp max =1520°C) and in the early Kenya/S. Ethiopia magmatism (Tp max = 1510°C) are virtually identical. Our results indicate that the existing geochemical division between high and low Ti Ethiopia/Yemen flood basalts has a thermal basis: low-Ti lavas are hotter than the high-Ti lavas. Magmatism in the region subsequent to 23 Ma exhibits only minor cooling (Tp max = 1490°C), though more substantial cooling is observed in Turkana, Kenya (60°C) and Yemen (80°C). Rift lavas from Ethiopia exhibit a clear decrease in Tp away from Afar southwestward along the EAR before progressively rising again in Southern Ethiopia towards Turkana. South of Turkana, elevated Tp is observed in the western and eastern branches of the EAR surrounding the Tanzania Craton. The modern spatial distribution of Tp in EAR magmatism indicate two distinct heat sources, one in Afar and another under the Tanzania craton. We suggest that hot mantle plume material from Afar and Turkana (which may or may not merge at depth) is channeled beneath the thinned rift lithosphere and provides a

  7. A fully consistent and conservative vertically adaptive coordinate system for SLIM 3D v0.4 with an application to the thermocline oscillations of Lake Tanganyika

    NASA Astrophysics Data System (ADS)

    Delandmeter, Philippe; Lambrechts, Jonathan; Legat, Vincent; Vallaeys, Valentin; Naithani, Jaya; Thiery, Wim; Remacle, Jean-François; Deleersnijder, Eric

    2018-03-01

    The discontinuous Galerkin (DG) finite element method is well suited for the modelling, with a relatively small number of elements, of three-dimensional flows exhibiting strong velocity or density gradients. Its performance can be highly enhanced by having recourse to r-adaptivity. Here, a vertical adaptive mesh method is developed for DG finite elements. This method, originally designed for finite difference schemes, is based on the vertical diffusion of the mesh nodes, with the diffusivity controlled by the density jumps at the mesh element interfaces. The mesh vertical movement is determined by means of a conservative arbitrary Lagrangian-Eulerian (ALE) formulation. Though conservativity is naturally achieved, tracer consistency is obtained by a suitable construction of the mesh vertical velocity field, which is defined in such a way that it is fully compatible with the tracer and continuity equations at a discrete level. The vertically adaptive mesh approach is implemented in the three-dimensional version of the geophysical and environmental flow Second-generation Louvain-la-Neuve Ice-ocean Model (SLIM 3D; www.climate.be/slim). Idealised benchmarks, aimed at simulating the oscillations of a sharp thermocline, are dealt with. Then, the relevance of the vertical adaptivity technique is assessed by simulating thermocline oscillations of Lake Tanganyika. The results are compared to measured vertical profiles of temperature, showing similar stratification and outcropping events.

  8. Misclassified maternal deaths among East African immigrants in Sweden.

    PubMed

    Elebro, Karin; Rööst, Mattias; Moussa, Kontie; Johnsdotter, Sara; Essén, Birgitta

    2007-11-01

    Western countries have reported an increased risk of maternal mortality among African immigrants. This study aimed to identify cases of maternal mortality among immigrants from the Horn of Africa living in Sweden using snowball sampling, and verify whether they had been classified as maternal deaths in the Cause of Death Registry. Three "locators" contacted immigrants from Somalia, Eritrea, and Ethiopia to identify possible cases of maternal mortality. Suspected deaths were scrutinised through verbal autopsy and medical records. Confirmed instances, linked by country of birth, were compared with Registry statistics. We identified seven possible maternal deaths of which four were confirmed in medical records, yet only one case had been classified as such in the Cause of Death Registry. At least two cases, a significant number, seemed to be misclassified. The challenges of both cultural and medical competence for European midwives and obstetricians caring for non-European immigrant mothers should be given more attention, and the chain of information regarding maternal deaths should be strengthened. We propose a practice similar to the British confidential enquiry into maternal deaths. In Sweden, snowball sampling was valuable for contacting immigrant communities for research on maternal mortality; by strengthening statistical validity, it can contribute to better maternal health policy in a multi-ethnic society.

  9. Sunspots, El Niño, and the levels of Lake Victoria, East Africa

    NASA Astrophysics Data System (ADS)

    Stager, J. Curt; Ruzmaikin, Alexander; Conway, Declan; Verburg, Piet; Mason, Peter J.

    2007-08-01

    An association of high sunspot numbers with rises in the level of Lake Victoria, East Africa, has been the focus of many investigations and vigorous debate during the last century. In this paper, we show that peaks in the ~11-year sunspot cycle were accompanied by Victoria level maxima throughout the 20th century, due to the occurrence of positive rainfall anomalies ~1 year before solar maxima. Similar patterns also occurred in at least five other East African lakes, which indicates that these sunspot-rainfall relationships were broadly regional in scale. Although irradiance fluctuations associated with the sunspot cycle are weak, their effects on tropical rainfall could be amplified through interactions with sea surface temperatures and atmospheric circulation systems, including ENSO. If this Sun-rainfall relationship persists in the future, then sunspot cycles can be used for long-term prediction of precipitation anomalies and associated outbreaks of insect-borne disease in much of East Africa. In that case, unusually wet rainy seasons and Rift Valley Fever epidemics should occur a year or so before the next solar maximum, which is expected to occur in 2011-2012 AD.

  10. A new velocity field for Africa from combined GPS and DORIS space geodetic Solutions: Contribution to the definition of the African reference frame (AFREF)

    NASA Astrophysics Data System (ADS)

    Saria, E.; Calais, E.; Altamimi, Z.; Willis, P.; Farah, H.

    2013-04-01

    We analyzed 16 years of GPS and 17 years of Doppler orbitography and radiopositioning integrated by satellite (DORIS) data at continuously operating geodetic sites in Africa and surroundings to describe the present-day kinematics of the Nubian and Somalian plates and constrain relative motions across the East African Rift. The resulting velocity field describes horizontal and vertical motion at 133 GPS sites and 9 DORIS sites. Horizontal velocities at sites located on stable Nubia fit a single plate model with a weighted root mean square residual of 0.6 mm/yr (maximum residual 1 mm/yr), an upper bound for plate-wide motions and for regional-scale deformation in the seismically active southern Africa and Cameroon volcanic line. We confirm significant southward motion ( ˜ 1.5 mm/yr) in Morocco with respect to Nubia, consistent with earlier findings. We propose an updated angular velocity for the divergence between Nubia and Somalia, which provides the kinematic boundary conditions to rifting in East Africa. We update a plate motion model for the East African Rift and revise the counterclockwise rotation of the Victoria plate and clockwise rotation of the Rovuma plate with respect to Nubia. Vertical velocities range from - 2 to +2 mm/yr, close to their uncertainties, with no clear geographic pattern. This study provides the first continent-wide position/velocity solution for Africa, expressed in International Terrestrial Reference Frame (ITRF2008), a contribution to the upcoming African Reference Frame (AFREF). Except for a few regions, the African continent remains largely under-sampled by continuous space geodetic data. Efforts are needed to augment the geodetic infrastructure and openly share existing data sets so that the objectives of AFREF can be fully reached.

  11. Researching the Link Between Biomass Burning and Drought Across the Northern Sub-Saharan African Savanna/Sahel Belt

    NASA Technical Reports Server (NTRS)

    Ichoku, Charles; Ellison, Luke

    2012-01-01

    The northern sub-Saharan African (NSSA) region, bounded by the Sahara, Equator, and the West and East African coastlines, is subjected to intense biomass burning every year during the dry season. This is believed to be one of the drivers of the regional carbon and energy cycles, with serious implications for the water cycle anomalies that probably contribute to drought and desertification. In this presentation, we will discuss a new multi-disciplinary research in the NSSA region, review progress, evaluate preliminary results, and interact with the research and user communities to examine how best to coordinate with other research activities in order to address related environmental issues most effectively.

  12. Xenoliths from Bunyaruguru volcanic field: Some insights into lithology of East African Rift upper mantle

    NASA Astrophysics Data System (ADS)

    Muravyeva, N. S.; Senin, V. G.

    2018-01-01

    The mineral composition of mantle xenoliths from kamafugites of the Bunyaruguru volcanic field has been determined. The major and some trace elements (Si, Ti, Al, Fe, Mn, Mg, Ca, Na, K, Cr, Ni, Ba, Sr, La, Ce, Nd, Nb) has been analyzed in olivine, clinopyroxene, phlogopite, Cr-spinel, titanomagnetite, perovskite and carbonates of xenoliths and their host lavas. Bunyaruguru is one of three (Katwe-Kikorongo, Fort Portal and Bunyaruguru) volcanic fields included in the Toro-Ankole province located on the North end of the West Branch of the East African Rift. The xenoliths from three craters within the Bunyaruguru volcanic field revealed the different character of metasomatic alteration, reflecting the heterogeneity of the mantle on the kilometer scale. The most unusual finding was composite glimmerite-wehrlite xenolith from the crater Kazimiro, which contains the fresh primary high-Mg olivine with inclusions of Cr-spinel that had not been previously identified in this area. The different composition of phenocryst and xenolith minerals indicates that the studied xenoliths are not cumulus of enclosing magma, but the composition of xenoliths characterizes the lithology of the upper mantle of the area. The carbonate melt inclusions in olivine Fo90 demonstrate the existence of primary carbonatitic magmas in Bunyaruguru upper mantle. The results of texture and chemical investigation of the xenolith minerals indicate the time sequence of metasomatic alteration of Bunyaruguru upper mantle: MARID metasomatism at the first stage followed by carbonate metasomatism. The abundances of REE in perovskites from kamafugite are 2-4 times higher than similar values for xenolith. Therefore the kamafugite magma was been generated from a more enriched mantle source than the source of the xenoliths. The evaluation of P-T conditions formation of clinopyroxene xenolith revealed the range of pressure 20-65 kbar and the temperatures range 830-1040 °C. The pressure of clinopyroxene phenocryst

  13. Geochemical evidence for pre- and syn-rifting lithospheric foundering in the East African Rift System

    NASA Astrophysics Data System (ADS)

    Nelson, W. R.; Furman, T.; Elkins-Tanton, L. T.

    2015-12-01

    The East African Rift System (EARS) is the archetypal active continental rift. The rift branches cut through the elevated Ethiopian and Kenyan domes and are accompanied by a >40 Myr volcanic record. This record is often used to understand changing mantle dynamics, but this approach is complicated by the diversity of spatio-temporally constrained, geochemically unique volcanic provinces. Various sources have been invoked to explain the geochemical variability across the EARS (e.g. mantle plume(s), both enriched and depleted mantle, metasomatized or pyroxenitic lithosphere, continental crust). Mantle contributions are often assessed assuming adiabatic melting of mostly peridotitic material due to extension or an upwelling thermal plume. However, metasomatized lithospheric mantle does not behave like fertile or depleted peridotite mantle, so this model must be modified. Metasomatic lithologies (e.g. pyroxenite) are unstable compared to neighboring peridotite and can founder into the underlying asthenosphere via ductile dripping. As such a drip descends, the easily fusible metasomatized lithospheric mantle heats conductively and melts at increasing T and P; the subsequent volcanic products in turn record this drip magmatism. We re-evaluated existing data of major mafic volcanic episodes throughout the EARS to investigate potential evidence for lithospheric drip foundering that may be an essential part of the rifting process. The data demonstrate clearly that lithospheric drip melting played an important role in pre-flood basalt volcanism in Turkana (>35 Ma), high-Ti "mantle plume-derived" flood basalts and picrites (HT2) from NW Ethiopia (~30 Ma), Miocene shield volcanism on the E Ethiopian Plateau and in Turkana (22-26 Ma), and Quaternary volcanism in Virunga (Western Rift) and Chyulu Hills (Eastern Rift). In contrast, there is no evidence for drip melting in "lithosphere-derived" flood basalts (LT) from NW Ethiopia, Miocene volcanism in S Ethiopia, or Quaternary

  14. Black versus Black: The Relationship among African, African American, and African Caribbean Persons.

    ERIC Educational Resources Information Center

    Jackson, Jennifer V.; Cothran, Mary E.

    2003-01-01

    Surveyed people of African descent regarding relationships among African, African-American, and African-Caribbean persons, focusing on contact and friendship, travel to countries of the diaspora, cross-cultural communication, thoughts and stereotypes, and education. Most respondents had contacts with the other groups, but groups had preconceived…

  15. SADCC: challenging the "South African connection.".

    PubMed

    Liebenow, J G

    1982-01-01

    The Southern African Development Coordination Conference (SADCC) which unites 9 states with a combined population of 60 million, has as its objective the task of promoting economic development and realizing economic independence. In many respects the strain of neocolonialism that Southern Africa faces at this time is even more virulent than that facing West, Central, and East Africa. In the latter regions the surrender of political authority by colonial administrators frequently left the commercial, agricultural, and industrial interests of the European powers in continued control of the economies of the former colonies. The fate of economic development plans was determined by situations and decisions made in places distant from the African continent. In the case of Southern Africa, the withdrawal or expulsion of European colonialists has found whites in neighboring South Africa most eager to step into the economic breech. For most of the Southern African states this variant strain of the neocolonial virus creates a dual problem: the independent states acting separately have been no match for South Africa; and the acquiescence of independent African states in forging economic links with South Africa has impeded the liberation efforts of Africans in Namibia and the Republic of South Africa. Discussion focus turns to the challenges that confront SADCC; transport as the most significant factor accounting for the dependency of SADCC states upon South Africa; the role of minerals in dependency; other aspects of dependency; South Africa's proposed Constellation of States; the origins and objectives of SADCC; and dollars and donors. SADCC planning for economic liberation has been conducted against the background of a counterproposal advanced by South Africa's government, which put the Republic at the center of an expanded network of economic linkages within the entire southern African region. While being formally rejected, the Constellation of States scheme does have

  16. What are the emerging features of community health insurance schemes in East Africa?

    PubMed Central

    Basaza, Robert; Pariyo, George; Criel, Bart

    2009-01-01

    Background The three East African countries of Uganda, Tanzania, and Kenya are characterized by high poverty levels, population growth rates, prevalence of HIV/AIDS, under-funding of the health sector, poor access to quality health care, and small health insurance coverage. Tanzania and Kenya have user-fees whereas Uganda abolished user-fees in public-owned health units. Objective To provide comparative description of community health insurance (CHI) schemes in three East African countries of Uganda, Tanzania, and Kenya and thereafter provide a basis for future policy research for development of CHI schemes. Methods An analytical grid of 10 distinctive items pertaining to the nature of CHI schemes was developed so as to have a uniform lens of comparing country situations of CHI. Results and conclusions The majority of the schemes have been in existence for a relatively short time of less than 10 years and their number remains small. There is need for further research to identify what is the mix and weight of factors that cause people to refrain from joining schemes. Specific issues that could also be addressed in subsequent studies are whether the current schemes provide financial protection, increase access to quality of care and impact on the equity of health services financing and delivery. On the basis of this knowledge, rational policy decisions can be taken. The governments thereafter could consider an option of playing more roles in advocacy, paying for the poorest, and developing an enabling policy and legal framework. PMID:22312207

  17. Dissecting the within-Africa ancestry of populations of African descent in the Americas.

    PubMed

    Stefflova, Klara; Dulik, Matthew C; Barnholtz-Sloan, Jill S; Pai, Athma A; Walker, Amy H; Rebbeck, Timothy R

    2011-01-06

    The ancestry of African-descended Americans is known to be drawn from three distinct populations: African, European, and Native American. While many studies consider this continental admixture, few account for the genetically distinct sources of ancestry within Africa--the continent with the highest genetic variation. Here, we dissect the within-Africa genetic ancestry of various populations of the Americas self-identified as having primarily African ancestry using uniparentally inherited mitochondrial DNA. We first confirmed that our results obtained using uniparentally-derived group admixture estimates are correlated with the average autosomal-derived individual admixture estimates (hence are relevant to genomic ancestry) by assessing continental admixture using both types of markers (mtDNA and Y-chromosome vs. ancestry informative markers). We then focused on the within-Africa maternal ancestry, mining our comprehensive database of published mtDNA variation (∼5800 individuals from 143 African populations) that helped us thoroughly dissect the African mtDNA pool. Using this well-defined African mtDNA variation, we quantified the relative contributions of maternal genetic ancestry from multiple W/WC/SW/SE (West to South East) African populations to the different pools of today's African-descended Americans of North and South America and the Caribbean. Our analysis revealed that both continental admixture and within-Africa admixture may be critical to achieving an adequate understanding of the ancestry of African-descended Americans. While continental ancestry reflects gender-specific admixture processes influenced by different socio-historical practices in the Americas, the within-Africa maternal ancestry reflects the diverse colonial histories of the slave trade. We have confirmed that there is a genetic thread connecting Africa and the Americas, where each colonial system supplied their colonies in the Americas with slaves from African colonies they controlled

  18. Above-ground biomass and structure of 260 African tropical forests

    PubMed Central

    Lewis, Simon L.; Sonké, Bonaventure; Sunderland, Terry; Begne, Serge K.; Lopez-Gonzalez, Gabriela; van der Heijden, Geertje M. F.; Phillips, Oliver L.; Affum-Baffoe, Kofi; Baker, Timothy R.; Banin, Lindsay; Bastin, Jean-François; Beeckman, Hans; Boeckx, Pascal; Bogaert, Jan; De Cannière, Charles; Chezeaux, Eric; Clark, Connie J.; Collins, Murray; Djagbletey, Gloria; Djuikouo, Marie Noël K.; Droissart, Vincent; Doucet, Jean-Louis; Ewango, Cornielle E. N.; Fauset, Sophie; Feldpausch, Ted R.; Foli, Ernest G.; Gillet, Jean-François; Hamilton, Alan C.; Harris, David J.; Hart, Terese B.; de Haulleville, Thales; Hladik, Annette; Hufkens, Koen; Huygens, Dries; Jeanmart, Philippe; Jeffery, Kathryn J.; Kearsley, Elizabeth; Leal, Miguel E.; Lloyd, Jon; Lovett, Jon C.; Makana, Jean-Remy; Malhi, Yadvinder; Marshall, Andrew R.; Ojo, Lucas; Peh, Kelvin S.-H.; Pickavance, Georgia; Poulsen, John R.; Reitsma, Jan M.; Sheil, Douglas; Simo, Murielle; Steppe, Kathy; Taedoumg, Hermann E.; Talbot, Joey; Taplin, James R. D.; Taylor, David; Thomas, Sean C.; Toirambe, Benjamin; Verbeeck, Hans; Vleminckx, Jason; White, Lee J. T.; Willcock, Simon; Woell, Hannsjorg; Zemagho, Lise

    2013-01-01

    We report above-ground biomass (AGB), basal area, stem density and wood mass density estimates from 260 sample plots (mean size: 1.2 ha) in intact closed-canopy tropical forests across 12 African countries. Mean AGB is 395.7 Mg dry mass ha−1 (95% CI: 14.3), substantially higher than Amazonian values, with the Congo Basin and contiguous forest region attaining AGB values (429 Mg ha−1) similar to those of Bornean forests, and significantly greater than East or West African forests. AGB therefore appears generally higher in palaeo- compared with neotropical forests. However, mean stem density is low (426 ± 11 stems ha−1 greater than or equal to 100 mm diameter) compared with both Amazonian and Bornean forests (cf. approx. 600) and is the signature structural feature of African tropical forests. While spatial autocorrelation complicates analyses, AGB shows a positive relationship with rainfall in the driest nine months of the year, and an opposite association with the wettest three months of the year; a negative relationship with temperature; positive relationship with clay-rich soils; and negative relationships with C : N ratio (suggesting a positive soil phosphorus–AGB relationship), and soil fertility computed as the sum of base cations. The results indicate that AGB is mediated by both climate and soils, and suggest that the AGB of African closed-canopy tropical forests may be particularly sensitive to future precipitation and temperature changes. PMID:23878327

  19. Termites create spatial structure and govern ecosystem function by affecting N2 fixation in an East African savanna.

    PubMed

    Fox-Dobbs, Kena; Doak, Daniel F; Brody, Alison K; Palmer, Todd M

    2010-05-01

    The mechanisms by which even the clearest of keystone or dominant species exert community-wide effects are only partially understood in most ecosystems. This is especially true when a species or guild influences community-wide interactions via changes in the abiotic landscape. Using stable isotope analyses, we show that subterranean termites in an East African savanna strongly influence a key ecosystem process: atmospheric nitrogen fixation by a monodominant tree species and its bacterial symbionts. Specifically, we applied the 15N natural abundance method in combination with other biogeochemical analyses to assess levels of nitrogen fixation by Acacia drepanolobium and its effects on co-occurring grasses and forbs in areas near and far from mounds and where ungulates were or were not excluded. We find that termites exert far stronger effects than do herbivores on nitrogen fixation. The percentage of nitrogen derived from fixation in Acacia drepanolobium trees is higher (55-80%) away from mounds vs. near mounds (40-50%). Mound soils have higher levels of plant available nitrogen, and Acacia drepanolobium may preferentially utilize soil-based nitrogen sources in lieu of fixed nitrogen when these sources are readily available near termite mounds. At the scale of the landscape, our models predict that termite/soil derived nitrogen sources influence >50% of the Acacia drepanolobium trees in our system. Further, the spatial extent of these effects combine with the spacing of termite mounds to create highly regular patterning in nitrogen fixation rates, resulting in marked habitat heterogeneity in an otherwise uniform landscape. In summary, we show that termite-associated effects on nitrogen processes are not only stronger than those of more apparent large herbivores in the same system, but also occur in a highly regular spatial pattern, potentially adding to their importance as drivers of community and ecosystem structure.

  20. Sexual learning among East African adolescents in the context of generalized HIV epidemics: A systematic qualitative meta-synthesis.

    PubMed

    Knopf, Amelia S; McNealy, Kim R; Al-Khattab, Halima; Carter-Harris, Lisa; Oruche, Ukamaka Marian; Naanyu, Violet; Draucker, Claire Burke

    2017-01-01

    AIDS-related illness is the leading cause of mortality for adolescents in sub-Saharan Africa. Together, Kenya, Tanzania, and Uganda account for 21% of HIV-infected adolescents in sub-Saharan Africa. The United Nations framework for addressing the epidemic among adolescents calls for comprehensive sexual and reproductive health education. These HIV prevention efforts could be informed by a synthesis of existing research about the formal and informal sexual education of adolescents in countries experiencing generalized epidemics. The purpose of this study was to describe the process of sexual learning among East African adolescents living in the context of generalized HIV epidemics. Qualitative metasynthesis, a systematic procedure for integrating the results of multiple qualitative studies addressing a similar phenomenon, was used. Thirty-two research reports met study inclusion criteria. The reports were assessed in a four-step analytic process: appraisal, classification of findings, synthesis of findings, and construction of a framework depicting the process of sexual learning in this population. The framework includes three phases of sexual learning: 1) being primed for sex, 2) making sense of sex, and 3) having sexual experiences. Adolescents were primed for sex through gender norms, cultural practices, and economic structures as well as through conversations and formal instruction. They made sense of sex by acquiring information about sexual intercourse, reproduction and pregnancy, sexually transmitted infections, and relationships and by developing a variety of beliefs and attitudes about these topics. Some adolescents described having sexual experiences that met wants or needs, but many experienced sex that was coerced or violent. Whether sex was wanted, coerced, or violent, adolescents experienced worry about sexually transmitted infections or premarital pregnancy. The three phases of sexual learning interact to shape adolescents' sexual lives and their risk

  1. ICDP project DeepCHALLA: reconstructing East African climate change and environmental history over the past 250,000 years

    NASA Astrophysics Data System (ADS)

    Verschuren, Dirk; Van Daele, Maarten; Wolff, Christian; Waldmann, Nicolas; Meyer, Inka; Ombori, Titus; Peterse, Francien; O'Grady, Ryan; Schnurrenberger, Doug; Olago, Daniel

    2017-04-01

    Sediments on the bottom of Lake Challa, a 92-meter deep crater lake on the border of Kenya and Tanzania near Mt. Kilimanjaro, contain a uniquely long and continuous record of past climate and environmental change. The near-equatorial location and exceptional quality of this natural archive provide great opportunities to study tropical climate variability at both short (inter-annual to decadal) and long (glacial-interglacial) time scales; and the influence of this climate variability on the region's freshwater resources, the functioning of terrestrial ecosystems, and the history of the East African landscape in which modern humans (our species, Homo sapiens) evolved and have lived ever since. Supported in part by the International Continental Scientific Drilling Programme (ICDP), the DeepCHALLA project has now recovered the sediment record of Lake Challa down to 214.8 meter below the lake floor, with almost certain 100% cover of the uppermost 121.3 meter (ca.150,000 year BP to present) and estimated 85% cover over the lower part of the sequence, down to the lowermost distinct reflector in the available seismic stratigraphy. This reflector represents a 2 meter thick layer of volcanic sand and silt deposited ca.250,000 years ago, and overlies still older silty lacustrine clays deposited during early lake development. Down-hole logging produced continuous profiles of in-situ sediment composition that confer an absolute depth scale to both the recovered cores and their three-dimensional representation in seismic stratigraphy. As readily observed through the transparent core liners, Lake Challa sediments are finely laminated throughout most of the recovered sequence. Combined with the great time span, the exquisite temporal resolution of these sediments promises to greatly increase our understanding of tropical climate and ecosystem dynamics, and create a long-awaited equatorial counterpart to the high-latitude climate records extracted from the ice sheets of Greenland

  2. Land Use, Land Use History, and Soil Type Affect Soil Greenhouse Gas Fluxes From Agricultural Landscapes of the East African Highlands

    NASA Astrophysics Data System (ADS)

    Wanyama, I.; Rufino, M. C.; Pelster, D. E.; Wanyama, G.; Atzberger, C.; van Asten, P.; Verchot, Louis V.; Butterbach-Bahl, K.

    2018-03-01

    This study aims to explain effects of soil textural class, topography, land use, and land use history on soil greenhouse gas (GHG) fluxes in the Lake Victoria region. We measured GHG fluxes from intact soil cores collected in Rakai, Uganda, an area characterized by low-input smallholder (<2 ha) farming systems, typical for the East African highlands. The soil cores were air dried and rewetted to water holding capacities (WHCs) of 30, 55, and 80%. Soil CO2, CH4, and N2O fluxes were measured for 48 h following rewetting. Cumulative N2O fluxes were highest from soils under perennial crops and the lowest from soils under annual crops (P < 0.001 for all WHC). At WHC of 55% or 80%, the sandy clay loam soils had lower N2O fluxes than the clay soils (P < 0.001 and P = 0.041, respectively). Cumulative soil CO2 fluxes were highest from eucalyptus plantations and lowest from annual crops across multiple WHC (P = 0.014 at 30% WHC and P < 0.001 at both 55 and 80% WHC). Methane fluxes were below detectable limits, a shortcoming for using soil cores from the top soil. This study reveals that land use and soil type have strong effects on GHG fluxes from agricultural land in the study area. Field monitoring of fluxes is needed to confirm whether these findings are consistent with what happens in situ.

  3. Negro, Black, Black African, African Caribbean, African American or what? Labelling African origin populations in the health arena in the 21st century

    PubMed Central

    Agyemang, C.; Bhopal, R.; Bruijnzeels, M.

    2005-01-01

    Broad terms such as Black, African, or Black African are entrenched in scientific writings although there is considerable diversity within African descent populations and such terms may be both offensive and inaccurate. This paper outlines the heterogeneity within African populations, and discusses the strengths and limitations of the term Black and related labels from epidemiological and public health perspectives in Europe and the USA. This paper calls for debate on appropriate terminologies for African descent populations and concludes with the proposals that (1) describing the population under consideration is of paramount importance (2) the word African origin or simply African is an appropriate and necessary prefix for an ethnic label, for example, African Caribbean or African Kenyan or African Surinamese (3) documents should define the ethnic labels (4) the label Black should be phased out except when used in political contexts. PMID:16286485

  4. 19. VIEW OF CRUDE ORE BINS FROM EAST. EAST CRUDE ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    19. VIEW OF CRUDE ORE BINS FROM EAST. EAST CRUDE ORE BIN IN FOREGROUND WITH DISCHARGE TO GRIZZLY AT BOTTOM OF VIEW. CONCRETE RETAINING WALL TO LEFT (SOUTH) AND BOTTOM (EAST EDGE OF EAST BIN). - Bald Mountain Gold Mill, Nevada Gulch at head of False Bottom Creek, Lead, Lawrence County, SD

  5. Seasonal Forecast Skill And Teleconnections Over East Africa

    NASA Astrophysics Data System (ADS)

    MacLeod, D.; Palmer, T.

    2017-12-01

    Many people living in East Africa are significantly exposed to risks arising from climate variability. The region experiences two rainy seasons and poor performance of either or both of these (such as seen recently in 2016/17) reduces agricultural productivity and threatens food security. In combination with other factors this can lead to famine. By utilizing seasonal climate forecasts, preparatory actions can be taken in order to mitigate the risks arising from such climate variability. As part of the project ForPAc: "Towards forecast-based preparedness action", we are working with humanitarian agencies in Kenya to build such early warning systems on subseasonal-to-seasonal timescales. Here, the seasonal predictability and forecast skill of the two East African rainy seasons will be presented. Results from the new ECMWF operational forecasting system SEAS5 will be shown and compared to the previous System 4. Analysis of a new 110 year long atmosphere-only simulation will also be discussed, demonstrating impacts of atmosphere-ocean coupling as well as putting operational forecast skill in a long-term context. Particular focus will be given to the model representation of teleconnections of seasonal climate with global sea surface temperatures; highlighting sources of forecast error and informing future model development.

  6. Review and three new species of the flat bug genus Neochelonoderus Hoberlandt, 1967 from East Africa (Hemiptera: Heteroptera: Aradidae).

    PubMed

    Heiss, Ernst; Grebennikov, Vasily

    2015-04-17

    The apterous East African Mezirinae flat bug genus Neochelonoderus Hoberlandt 1967 is revised. In addition to known species from Burundi (N. basilewskyi) and Democratic Republic of the Congo (N. straeleni), two new species from Tanzania (N. talaus n. sp. and N. areius n. sp.) and one from Zambia (N. hoberlandti n. sp.) are described and illustrated. A key to the species of Neochelonoderus is presented.

  7. Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.

    PubMed

    Franceschini, Nora; Fox, Ervin; Zhang, Zhaogong; Edwards, Todd L; Nalls, Michael A; Sung, Yun Ju; Tayo, Bamidele O; Sun, Yan V; Gottesman, Omri; Adeyemo, Adebawole; Johnson, Andrew D; Young, J Hunter; Rice, Ken; Duan, Qing; Chen, Fang; Li, Yun; Tang, Hua; Fornage, Myriam; Keene, Keith L; Andrews, Jeanette S; Smith, Jennifer A; Faul, Jessica D; Guangfa, Zhang; Guo, Wei; Liu, Yu; Murray, Sarah S; Musani, Solomon K; Srinivasan, Sathanur; Velez Edwards, Digna R; Wang, Heming; Becker, Lewis C; Bovet, Pascal; Bochud, Murielle; Broeckel, Ulrich; Burnier, Michel; Carty, Cara; Chasman, Daniel I; Ehret, Georg; Chen, Wei-Min; Chen, Guanjie; Chen, Wei; Ding, Jingzhong; Dreisbach, Albert W; Evans, Michele K; Guo, Xiuqing; Garcia, Melissa E; Jensen, Rich; Keller, Margaux F; Lettre, Guillaume; Lotay, Vaneet; Martin, Lisa W; Moore, Jason H; Morrison, Alanna C; Mosley, Thomas H; Ogunniyi, Adesola; Palmas, Walter; Papanicolaou, George; Penman, Alan; Polak, Joseph F; Ridker, Paul M; Salako, Babatunde; Singleton, Andrew B; Shriner, Daniel; Taylor, Kent D; Vasan, Ramachandran; Wiggins, Kerri; Williams, Scott M; Yanek, Lisa R; Zhao, Wei; Zonderman, Alan B; Becker, Diane M; Berenson, Gerald; Boerwinkle, Eric; Bottinger, Erwin; Cushman, Mary; Eaton, Charles; Nyberg, Fredrik; Heiss, Gerardo; Hirschhron, Joel N; Howard, Virginia J; Karczewsk, Konrad J; Lanktree, Matthew B; Liu, Kiang; Liu, Yongmei; Loos, Ruth; Margolis, Karen; Snyder, Michael; Psaty, Bruce M; Schork, Nicholas J; Weir, David R; Rotimi, Charles N; Sale, Michele M; Harris, Tamara; Kardia, Sharon L R; Hunt, Steven C; Arnett, Donna; Redline, Susan; Cooper, Richard S; Risch, Neil J; Rao, D C; Rotter, Jerome I; Chakravarti, Aravinda; Reiner, Alex P; Levy, Daniel; Keating, Brendan J; Zhu, Xiaofeng

    2013-09-05

    High blood pressure (BP) is more prevalent and contributes to more severe manifestations of cardiovascular disease (CVD) in African Americans than in any other United States ethnic group. Several small African-ancestry (AA) BP genome-wide association studies (GWASs) have been published, but their findings have failed to replicate to date. We report on a large AA BP GWAS meta-analysis that includes 29,378 individuals from 19 discovery cohorts and subsequent replication in additional samples of AA (n = 10,386), European ancestry (EA) (n = 69,395), and East Asian ancestry (n = 19,601). Five loci (EVX1-HOXA, ULK4, RSPO3, PLEKHG1, and SOX6) reached genome-wide significance (p < 1.0 × 10(-8)) for either systolic or diastolic BP in a transethnic meta-analysis after correction for multiple testing. Three of these BP loci (EVX1-HOXA, RSPO3, and PLEKHG1) lack previous associations with BP. We also identified one independent signal in a known BP locus (SOX6) and provide evidence for fine mapping in four additional validated BP loci. We also demonstrate that validated EA BP GWAS loci, considered jointly, show significant effects in AA samples. Consequently, these findings suggest that BP loci might have universal effects across studied populations, demonstrating that multiethnic samples are an essential component in identifying, fine mapping, and understanding their trait variability. Copyright © 2013 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

  8. Dual African Origins of Global Aedes aegypti s.l. Populations Revealed by Mitochondrial DNA

    PubMed Central

    Moore, Michelle; Sylla, Massamba; Goss, Laura; Burugu, Marion Warigia; Sang, Rosemary; Kamau, Luna W.; Kenya, Eucharia Unoma; Bosio, Chris; Munoz, Maria de Lourdes; Sharakova, Maria; Black, William Cormack

    2013-01-01

    Background Aedes aegypti is the primary global vector to humans of yellow fever and dengue flaviviruses. Over the past 50 years, many population genetic studies have documented large genetic differences among global populations of this species. These studies initially used morphological polymorphisms, followed later by allozymes, and most recently various molecular genetic markers including microsatellites and mitochondrial markers. In particular, since 2000, fourteen publications and four unpublished datasets have used sequence data from the NADH dehydrogenase subunit 4 mitochondrial gene to compare Ae. aegypti collections and collectively 95 unique mtDNA haplotypes have been found. Phylogenetic analyses in these many studies consistently resolved two clades but no comprehensive study of mtDNA haplotypes have been made in Africa, the continent in which the species originated. Methods and Findings ND4 haplotypes were sequenced in 426 Ae. aegypti s.l. from Senegal, West Africa and Kenya, East Africa. In Senegal 15 and in Kenya 7 new haplotypes were discovered. When added to the 95 published haplotypes and including 6 African Aedes species as outgroups, phylogenetic analyses showed that all but one Senegal haplotype occurred in a basal clade while most East African haplotypes occurred in a second clade arising from the basal clade. Globally distributed haplotypes occurred in both clades demonstrating that populations outside Africa consist of mixtures of mosquitoes from both clades. Conclusions Populations of Ae. aegypti outside Africa consist of mosquitoes arising from one of two ancestral clades. One clade is basal and primarily associated with West Africa while the second arises from the first and contains primarily mosquitoes from East Africa PMID:23638196

  9. Phylogenetic information in polymorphic L1 and Alu insertions from East Asians and Native American populations.

    PubMed

    Mateus Pereira, L H; Socorro, A; Fernandez, I; Masleh, M; Vidal, D; Bianchi, N O; Bonatto, S L; Salzano, F M; Herrera, R J

    2005-09-01

    This study attempts to ascertain genetic affinities between Native American and East Asian populations by analyzing four polymorphic Alu insertions (PAIs) and three L1 polymorphic loci. These two genetic systems demonstrated strong congruence when levels of diversity and genetic distances were considered. Overall, genetic relatedness within Native American groups does not correlate with geographical and linguistic structure, although strong grouping for Native Americans with East Asians was demonstrated, with clear discrimination from African and European groups. Most of the variation was assigned to differences occurring within groups, but the interpopulation variation found for South Amerindians was recognizably higher in comparison to the other sampled groups of populations. Our data suggest that bottleneck events followed by strong influence of genetic drift in the process of the peopling of the Americas may have been determinant factors in delineating the genetic background of present-day South Amerindians. Since no clear subgroups were detected within Native Americans and East Asians, there is no indication of multiple waves in the early colonization of the New World. (c) 2005 Wiley-Liss, Inc.

  10. Adaptation of an Acculturation Scale for African Refugee Women

    PubMed Central

    Flynn, Priscilla; Asiedu, Gladys B.; Hedberg, Eric; Breitkopf, Carmen Radecki

    2014-01-01

    Newly-arrived African refugees are a vulnerable group of immigrants for whom no validated acculturation measures exist. A valid measurement tool is essential to understand how acculturative processes impact health and health disparities. We adapted the Bicultural Involvement Questionnaire (BIQ) to characterize its reliability among ethnic Somali women residing in Minnesota, and Somali, Somali Bantu, and Burundian women in Arizona. Surveys were administered to 164 adult women. Analyses were conducted along socio-demographic variables of ethnicity, geographic residence, age, and length of time in the United States through t tests and one-way analysis of variance. Exploratory factor analysis was conducted on the modified BIQ. Exploratory factor analyses yielded five subscales: “Speak Native Language”, “Speak English Language”, “Enjoy Native Activities”, “Enjoy American Activities”, and “Desired Ideal Culture”. The subscales of the modified BIQ possessed Cronbach’s α ranging from 0.68 to 0.92, suggestive that all subscales had acceptable to excellent internal consistency. The modified BIQ maintained its psychometric properties across geographic regions of resettled Central and East African refugees. PMID:24573644

  11. Conservation lessons from large-mammal manipulations in East African savannas: the KLEE, UHURU, and GLADE experiments

    USDA-ARS?s Scientific Manuscript database

    African savannas support an iconic fauna, but they are undergoing large-scale population declines and extinctions of large (>5 kg) mammals. Long-term, controlled, replicated experiments that explore the consequences of this defaunation (and its replacement with livestock) are rare. The Mpala Researc...

  12. Health Disparities and Triple-Negative Breast Cancer in African American Women: A Review.

    PubMed

    Newman, Lisa A; Kaljee, Linda M

    2017-05-01

    Variation in cancer incidence and outcome has well-documented correlations with racial/ethnic identity. In the United States, the possible genetic and ancestral hereditary explanations for these associations are confounded by socioeconomic, cultural, and lifestyle patterns. Differences in the breast cancer burden of African American compared with European/white American women represent one of the most notable examples of disparities in oncology related to racial/ethnic identity. Elucidating the source of these associations is imperative in achieving the promise of the national Precision Medicine Initiative. Population-based breast cancer mortality rates have been higher for African American compared with white American women since the early 1980s, largely reflecting declines in mortality that have been disproportionately experienced among white American patients and at least partly explained by the advent of endocrine therapy that is less effective in African American women because of the higher prevalence of estrogen receptor-negative disease. The increased risk of triple-negative breast cancer in African American women as well as western, sub-Saharan African women compared with white American, European, and east African women furthermore suggests that selected genetic components of geographically defined African ancestry are associated with hereditary susceptibility for specific patterns of mammary carcinogenesis. Disentangling health care access barriers, as well as reproductive, lifestyle, and dietary factors from genetic contributions to breast cancer disparities remains challenging. Epigenetics and experiences of societal inequality (allostatic load) increase the complexity of studying breast cancer risk related to racial/ethnic identity. Oncologic anthropology represents a transdisciplinary field of research that can combine the expertise of population geneticists, multispecialty oncologists, molecular epidemiologists, and behavioral scientists to eliminate

  13. Antigenic Variation of East/Central/South African and Asian Chikungunya Virus Genotypes in Neutralization by Immune Sera.

    PubMed

    Chua, Chong-Long; Sam, I-Ching; Merits, Andres; Chan, Yoke-Fun

    2016-08-01

    Chikungunya virus (CHIKV) is a re-emerging mosquito-borne virus which causes epidemics of fever, severe joint pain and rash. Between 2005 and 2010, the East/Central/South African (ECSA) genotype was responsible for global explosive outbreaks across India, the Indian Ocean and Southeast Asia. From late 2013, Asian genotype CHIKV has caused outbreaks in the Americas. The characteristics of cross-antibody efficacy and epitopes are poorly understood. We characterized human immune sera collected during two independent outbreaks in Malaysia of the Asian genotype in 2006 and the ECSA genotype in 2008-2010. Neutralizing capacity was analyzed against representative clinical isolates as well as viruses rescued from infectious clones of ECSA and Asian CHIKV. Using whole virus antigen and recombinant E1 and E2 envelope glycoproteins, we further investigated antibody binding sites, epitopes, and antibody titers. Both ECSA and Asian sera demonstrated stronger neutralizing capacity against the ECSA genotype, which corresponded to strong epitope-antibody interaction. ECSA serum targeted conformational epitope sites in the E1-E2 glycoprotein, and E1-E211K, E2-I2T, E2-H5N, E2-G118S and E2-S194G are key amino acids that enhance cross-neutralizing efficacy. As for Asian serum, the antibodies targeting E2 glycoprotein correlated with neutralizing efficacy, and I2T, H5N, G118S and S194G altered and improved the neutralization profile. Rabbit polyclonal antibody against the N-terminal linear neutralizing epitope from the ECSA sequence has reduced binding capacity and neutralization efficacy against Asian CHIKV. These findings imply that the choice of vaccine strain may impact cross-protection against different genotypes. Immune serum from humans infected with CHIKV of either ECSA or Asian genotypes showed differences in binding and neutralization characteristics. These findings have implications for the continued outbreaks of co-circulating CHIKV genotypes and effective design of

  14. Antigenic Variation of East/Central/South African and Asian Chikungunya Virus Genotypes in Neutralization by Immune Sera

    PubMed Central

    Chua, Chong-Long; Sam, I-Ching; Merits, Andres; Chan, Yoke-Fun

    2016-01-01

    Background Chikungunya virus (CHIKV) is a re-emerging mosquito-borne virus which causes epidemics of fever, severe joint pain and rash. Between 2005 and 2010, the East/Central/South African (ECSA) genotype was responsible for global explosive outbreaks across India, the Indian Ocean and Southeast Asia. From late 2013, Asian genotype CHIKV has caused outbreaks in the Americas. The characteristics of cross-antibody efficacy and epitopes are poorly understood. Methodology/Principal Findings We characterized human immune sera collected during two independent outbreaks in Malaysia of the Asian genotype in 2006 and the ECSA genotype in 2008–2010. Neutralizing capacity was analyzed against representative clinical isolates as well as viruses rescued from infectious clones of ECSA and Asian CHIKV. Using whole virus antigen and recombinant E1 and E2 envelope glycoproteins, we further investigated antibody binding sites, epitopes, and antibody titers. Both ECSA and Asian sera demonstrated stronger neutralizing capacity against the ECSA genotype, which corresponded to strong epitope-antibody interaction. ECSA serum targeted conformational epitope sites in the E1-E2 glycoprotein, and E1-E211K, E2-I2T, E2-H5N, E2-G118S and E2-S194G are key amino acids that enhance cross-neutralizing efficacy. As for Asian serum, the antibodies targeting E2 glycoprotein correlated with neutralizing efficacy, and I2T, H5N, G118S and S194G altered and improved the neutralization profile. Rabbit polyclonal antibody against the N-terminal linear neutralizing epitope from the ECSA sequence has reduced binding capacity and neutralization efficacy against Asian CHIKV. These findings imply that the choice of vaccine strain may impact cross-protection against different genotypes. Conclusion/Significance Immune serum from humans infected with CHIKV of either ECSA or Asian genotypes showed differences in binding and neutralization characteristics. These findings have implications for the continued

  15. Geology and metallogeny of the Ar Rayn terrane, eastern Arabian shield: Evolution of a Neoproterozoic continental-margin arc during assembly of Gondwana within the East African orogen

    USGS Publications Warehouse

    Doebrich, J.L.; Al-Jehani, A. M.; Siddiqui, A.A.; Hayes, T.S.; Wooden, J.L.; Johnson, P.R.

    2007-01-01

    characteristics of the Ar Rayn terrane are analogous to the Andean continental margin of Chile, with opposite subduction polarity. The Ar Rayn terrane represents a continental margin arc that lay above a west-dipping subduction zone along a continental block represented by the Afif composite terrane. The concentration of epithermal, porphyry Cu and IOCG mineral systems, of central arc affiliation, along the AAF suggests that the AAF is not an ophiolitic suture zone, but originated as a major intra-arc fault that localized magmatism and mineralization. West-directed oblique subduction and ultimate collision with a land mass from the east (East Gondwana?) resulted in major transcurrent displacement along the AAF, bringing the eastern part of the arc terrane to its present exposed position, juxtaposed across the AAF against a back-arc basin assemblage represented by the Abt schist of the Ad Dawadimi terrane. Our findings indicate that arc formation and accretionary processes in the Arabian shield were still ongoing into the latest Neoproterozoic (Ediacaran), to about 620-600 Ma, and lead us to conclude that evolution of the Ar Rayn terrane (arc formation, accretion, syn- to postorogenic plutonism) defines a final stage of assembly of the Gondwana supercontinent along the northeastern margin of the East African orogen. ?? 2007 Elsevier B.V. All rights reserved.

  16. The 17 Ma old Turkana beaked whale fossil: new paleoaltimetry constraints for uplift and environmental change in East Africa

    NASA Astrophysics Data System (ADS)

    Wichura, Henry; Jacobs, Louis L.; Strecker, Manfred R.; Lin, Andrew; Polcyn, Michael J.; Manthi, Fredrick K.; Winkler, Dale A.; Matthew, Clemens

    2015-04-01

    Timing and magnitude of vertical motions of the Earth's crust is key to evaluate the impact of tectonic processes on changes in atmospheric circulation patterns, rainfall, and environmental conditions. The East African Plateau (EAP) is a major topographic feature that fundamentally impacts the patterns of the Indian-African Monsoon and the eastward transport of air masses from the Congo Basin. Uplift of the EAP in Kenya has been linked to mantle processes, but due to the lack of reliable palaeoaltimetric data it has been challenging to unambiguously constrain plateau evolution, vertical motions associated with late Cenozoic rifting of the East African Rift System, and ensuing environmental change. We explored the fossil remains of a beaked whale (Ziphiidae) from the Turkana region in the northern Kenya Rift, 700 km inland from the present-day coastline of the Indian Ocean. The whale fossil, preserved near sea level, was discovered at an elevation of 620 m and thus constrains the uplift of the northeastern flanks of the EAP. The Kenyan ziphiid was discovered in fluvio-lacustrine sediments of the extensional Oligo-Miocene Lokichar basin (Mead, 1975) along with terrestrial mammals and freshwater molluscs below a basalt dated at 17.1 ± 1.0 Ma (Boschetto et al., 1992). The unifying characteristics of riverine occurrences of modern marine mammals include sufficient discharge in low-gradient rivers to maintain pathways deep enough to facilitate migration, and the absence of shallow bedrock, rapids, and waterfalls. The most likely route, which may have had these characteristics is a fluvial corridor controlled by protracted thermal subsidence of the Cretaceous Anza Rift, which once linked extensional processes in Central and East Africa with the continental margin of northeastern Africa. The fossil locality and analogies with present-day occurrences of marine mammals in terrestrial realms suggest that the ziphiid stranded slightly above sea level. In combination with

  17. Additive opportunistic capture explains group hunting benefits in African wild dogs.

    PubMed

    Hubel, Tatjana Y; Myatt, Julia P; Jordan, Neil R; Dewhirst, Oliver P; McNutt, J Weldon; Wilson, Alan M

    2016-03-29

    African wild dogs (Lycaon pictus) are described as highly collaborative endurance pursuit hunters based on observations derived primarily from the grass plains of East Africa. However, the remaining population of this endangered species mainly occupies mixed woodland savannah where hunting strategies appear to differ from those previously described. We used high-resolution GPS and inertial technology to record fine-scale movement of all members of a single pack of six adult African wild dogs in northern Botswana. The dogs used multiple short-distance hunting attempts with a low individual kill rate (15.5%), but high group feeding rate due to the sharing of prey. Use of high-level cooperative chase strategies (coordination and collaboration) was not recorded. In the mixed woodland habitats typical of their current range, simultaneous, opportunistic, short-distance chasing by dogs pursuing multiple prey (rather than long collaborative pursuits of single prey by multiple individuals) could be the key to their relative success in these habitats.

  18. Additive opportunistic capture explains group hunting benefits in African wild dogs

    PubMed Central

    Hubel, Tatjana Y.; Myatt, Julia P.; Jordan, Neil R.; Dewhirst, Oliver P.; McNutt, J. Weldon; Wilson, Alan M.

    2016-01-01

    African wild dogs (Lycaon pictus) are described as highly collaborative endurance pursuit hunters based on observations derived primarily from the grass plains of East Africa. However, the remaining population of this endangered species mainly occupies mixed woodland savannah where hunting strategies appear to differ from those previously described. We used high-resolution GPS and inertial technology to record fine-scale movement of all members of a single pack of six adult African wild dogs in northern Botswana. The dogs used multiple short-distance hunting attempts with a low individual kill rate (15.5%), but high group feeding rate due to the sharing of prey. Use of high-level cooperative chase strategies (coordination and collaboration) was not recorded. In the mixed woodland habitats typical of their current range, simultaneous, opportunistic, short-distance chasing by dogs pursuing multiple prey (rather than long collaborative pursuits of single prey by multiple individuals) could be the key to their relative success in these habitats. PMID:27023355

  19. 2. VIEW EAST, East Control Area, west radar tower in ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    2. VIEW EAST, East Control Area, west radar tower in foreground, east radar lower in background - Newport NIKE Missile Battery D-57/58, Integrated Fire Control Area, Newport Road, Carleton, Monroe County, MI

  20. 1. EAST FACING SIDE EAST AND SOUTH SOUTH FACING SIDE ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    1. EAST FACING SIDE EAST AND SOUTH SOUTH FACING SIDE RESIDENTIAL AREA AROUND BUILDINGS 136, 137, & 138 - Hill Field, Non-Commissioned Officers' Quarters, North side of Fourth street, East side of E Avenue, Layton, Davis County, UT

  1. CO2-rich phonolitic melt and carbonatite immiscibility in melt inclusions in nephelinite (Hanang volcano, North Tanzanian Divergence, East African Rift).

    NASA Astrophysics Data System (ADS)

    Baudouin, C.; Parat, F.

    2016-12-01

    Hanang is the southern volcano of the East branch of the East African Rift and represents volcanic activity at early stage rifting (0.9 Ma). Lavas are highly alkaline Mg-poor nephelinites (Mg#=24.4-35.2) with cpx, garnet, nepheline, titanite, and apatite and result from fractional crystallisation of primary melilitite magmas (Parat et al. AGU2016). In this study, we investigate glassy melt inclusions at the rim of nepheline phenocrysts to constrain the late stage of nephelinite evolution and the behaviour of volatiles (CO2, H2O, S, F, Cl) during magma storage and ascent. The melt inclusions have a green silicate glass, a microcrystalline carbonate phase and a shrinkage bubble free of gas phase (Raman analyses) suggesting that carbonatite-silicate liquid immiscibility (85:15) occurred during nephelinite differentiation. The silicate glasses have trachytic composition (Na+K/Al=1.6-7.2, SiO2=54-65.5 wt%) with high CO2 (0.43 wt% CO2, SIMS analyses), sulfur (0.21-0.92 wt% S) and halogens (0.28-0.84 wt% Cl; 0.35-2.54 wt% F) content and very low H2O content (<0.1wt%, Raman analyses). The carbonate phase is an anhydrous Ca-Na±S,K- carbonate with 33 wt% CaO, 20 wt% Na2O, 3 wt% K2O, and 3 wt% S. The pre-immiscible silicate liquid (e.g. silicate melt + carbonatite) in equilibrium with nepheline and cpx phenocrysts has CO2-rich phonolitic composition (Na+K/Al=6.2-6.9) with 6 ± 1.5 wt% CO2 at pressure of 700-1100 MPa. The entrapped melt in nepheline corresponds to evolved interstitial silicate melt after crystallisation of cpx (16.7%), nepheline (40%) garnet (6.5%) and apatite (1.7%) from Mg-nephelinite magma. The immiscibility process leading to glassy silicate melt and microcrystalline carbonatitic melt occurred in closed system during rapid ascent at crustal level at 200-230 MPa. The absence of gas phase in shrinkage bubble in melt inclusions suggests CO2-undersaturated conditions during quenching. The absence of carbonatite lavas at Hanang volcano is then explained by

  2. An Analysis Of The Strategic Impact Of The Campaign In German East Africa During The First World War

    DTIC Science & Technology

    2013-04-04

    anything more than reconnaissance owing to their weak engines . 50 Consequently the British decided instead to blockade the entire coast of German East...outfitting two blockade runners and an airship pale in comparison. Since they were cut off from Germany for most of the campaign, the African soldiers...packages for the carriers. 73 The final German resupply attempt was via Zeppelin. Preparations began in June 1917 and by November the airship was

  3. Dissecting the Within-Africa Ancestry of Populations of African Descent in the Americas

    PubMed Central

    Stefflova, Klara; Dulik, Matthew C.; Barnholtz-Sloan, Jill S.; Pai, Athma A.; Walker, Amy H.; Rebbeck, Timothy R.

    2011-01-01

    Background The ancestry of African-descended Americans is known to be drawn from three distinct populations: African, European, and Native American. While many studies consider this continental admixture, few account for the genetically distinct sources of ancestry within Africa – the continent with the highest genetic variation. Here, we dissect the within-Africa genetic ancestry of various populations of the Americas self-identified as having primarily African ancestry using uniparentally inherited mitochondrial DNA. Methods and Principal Findings We first confirmed that our results obtained using uniparentally-derived group admixture estimates are correlated with the average autosomal-derived individual admixture estimates (hence are relevant to genomic ancestry) by assessing continental admixture using both types of markers (mtDNA and Y-chromosome vs. ancestry informative markers). We then focused on the within-Africa maternal ancestry, mining our comprehensive database of published mtDNA variation (∼5800 individuals from 143 African populations) that helped us thoroughly dissect the African mtDNA pool. Using this well-defined African mtDNA variation, we quantified the relative contributions of maternal genetic ancestry from multiple W/WC/SW/SE (West to South East) African populations to the different pools of today's African-descended Americans of North and South America and the Caribbean. Conclusions Our analysis revealed that both continental admixture and within-Africa admixture may be critical to achieving an adequate understanding of the ancestry of African-descended Americans. While continental ancestry reflects gender-specific admixture processes influenced by different socio-historical practices in the Americas, the within-Africa maternal ancestry reflects the diverse colonial histories of the slave trade. We have confirmed that there is a genetic thread connecting Africa and the Americas, where each colonial system supplied their colonies in the

  4. 55. LOOKING EAST FROM HEAD OF PLANE 2 EAST. POWER ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    55. LOOKING EAST FROM HEAD OF PLANE 2 EAST. POWER HOUSE AND FLUME VISIBLE TO RIGHT, TAILRACE RUNNING THROUGH CENTER OF PHOTOGRAPH. CRADLE TO INCLINED PLANE 3 EAST IS VISIBLE IN BACKGROUND TO LEFT. - Morris Canal, Phillipsburg, Warren County, NJ

  5. Characteristics and predictors of oral cancer knowledge in a predominantly African American community.

    PubMed

    Osazuwa-Peters, Nosayaba; Adjei Boakye, Eric; Hussaini, Adnan S; Sujijantarat, Nanthiya; Ganesh, Rajan N; Snider, Matthew; Thompson, Devin; Varvares, Mark A

    2017-01-01

    To characterize smoking and alcohol use, and to describe predictors of oral cancer knowledge among a predominantly African-American population. A cross-sectional study was conducted between September, 2013 among drag racers and fans in East St. Louis. Oral cancer knowledge was derived from combining questionnaire items to form knowledge score. Covariates examined included age, sex, race, marital status, education status, income level, insurance status, tobacco and alcohol use. Adjusted linear regression analysis measured predictors of oral cancer knowledge. Three hundred and four participants completed questionnaire; 72.7% were African Americans. Smoking rate was 26.7%, alcohol use was 58.3%, and mean knowledge score was 4.60 ± 2.52 out of 17. In final adjusted regression model, oral cancer knowledge was associated with race and education status. Compared with Caucasians, African Americans were 29% less likely to have high oral cancer knowledge (β = -0.71; 95% CI: -1.35, -0.07); and participants with a high school diploma or less were 124% less likely to have high oral cancer knowledge compared with college graduates (β = -1.24; 95% CI: -2.44, -0.41). There was lower oral cancer knowledge among African Americans and those with low education. The prevalence of smoking was also very high. Understanding predictors of oral cancer knowledge is important in future design of educational interventions specifically targeted towards high-risk group for oral cancer.

  6. The Geomorphometrics of the Rio Grande Rift: The role of tectonics, climate, and erosional processes in forming the Rio Grande river

    NASA Astrophysics Data System (ADS)

    Berry, M. A.; van Wijk, J.; Emry, E.; Axen, G. J.; Coblentz, D. D.

    2016-12-01

    Geomorphometrics provides a powerful tool for quantifying the topographic fabric of a landscape and can help with correlating surface features with underlying dynamic processes. Here we use a suite of geomorphometric metrics (including the topographic power spectra, fabric orientation/organization) to compare and contrast the geomorphology of two of the world's major rifts, the Rio Grande Rift (RGR) in western US and the East Africa Rift (EAR). The motivation for this study is the observation of fundamental differences between the characteristics of the intra-rift river drainage for the two rifts. The RGR consists of a series of NS trending rift basins, connected by accommodation or transfer zones. The Rio Grande river developed in the late Neogene, and follows these rift segments from the San Luis basin in Colorado to the Gulf of Mexico. Before the river system formed, basins are thought to have formed internally draining systems, characterized by shallow playa lakes. This is in contrast with lakes in the Tanganyika and Malawi rifts of the East African Rift that are deep and have existed for >5 My. We investigate the role of climate, tectonics and erosional processes in the formation of the through-going Rio Grande river. This occurred around the time of a slowing down of rift opening ( 10 Ma), but also climatic changes in the southwestern U.S. have been described for the late Neogene. To model our hypothesis, a tectonics and surface transport code TISC (Transport, Isostasy, Surface Transport, Climate) was used to evaluate the dynamics of a series of proto-rift basins and their connecting accommodation zones. Basin infill and drainage system development are studied as a result of varying sediment budgets, climate variables, and rift opening rate.

  7. Petrogenesis of strongly alkaline primitive volcanic rocks at the propagating tip of the western branch of the East African Rift

    NASA Astrophysics Data System (ADS)

    Rosenthal, A.; Foley, S. F.; Pearson, D. G.; Nowell, G. M.; Tappe, S.

    2009-06-01

    Strongly silica-undersaturated potassic lavas (kamafugites) and carbonatitic tuffs are characteristic of the Toro-Ankole volcanic field in southwestern Uganda, forming the youngest and most northward volcanics of the western branch of the East African Rift. Lavas contain exceptionally low SiO 2 (31.8-42.8 wt.%), high CaO (up to 16.6 wt.%) and K 2O (up to 7 wt.%). They exhibit moderately enriched correlated Nd ( ɛNd - 0.1 to - 4.7) and Hf ( ɛHf - 0.1 to - 8.8) isotope signatures, indicating time-integrated enrichment in incompatible elements in the source, attributed to mixing between two metasomatic assemblages, a phlogopite-rich MARID-type and a later carbonate-rich assemblage. The restricted range of 87Sr/ 86Sr (0.704599-0.705402) is due to Sr being dominated by the carbonate-rich assemblage, which also imparts a Nd and Hf signature similar to convecting upper mantle. Os isotopes ( γOs up to 290 and variable Os concentrations of 0.056-1.454 ppb) are curved due to mixing between the carbonate-rich metasome and a second end-member that may be derived from melting peridotite, the MARID assemblage, or a mixture of both. Enrichment of the peridotitic mantle in carbonate and silicate melts at 4-6 GPa occurs also in other areas where geochemically similar ultramafic lamprophyres result. The Ugandan kamafugites thus represent the earliest and deepest-derived magmas in a rift through thick continental lithosphere beneath the continuous Congo-Tanzania craton. The Ugandan rift-related mantle enrichment is older than the earliest known tectonic surface expression of the rift.

  8. Expression and Sequence Evolution of Aromatase cyp19a1 and Other Sexual Development Genes in East African Cichlid Fishes

    PubMed Central

    Böhne, Astrid; Heule, Corina; Boileau, Nicolas; Salzburger, Walter

    2013-01-01

    Sex determination mechanisms are highly variable across teleost fishes and sexual development is often plastic. Nevertheless, downstream factors establishing the two sexes are presumably conserved. Here, we study sequence evolution and gene expression of core genes of sexual development in a prime model system in evolutionary biology, the East African cichlid fishes. Using the available five cichlid genomes, we test for signs of positive selection in 28 genes including duplicates from the teleost whole-genome duplication, and examine the expression of these candidate genes in three cichlid species. We then focus on a particularly striking case, the A- and B-copies of the aromatase cyp19a1, and detect different evolutionary trajectories: cyp19a1A evolved under strong positive selection, whereas cyp19a1B remained conserved at the protein level, yet is subject to regulatory changes at its transcription start sites. Importantly, we find shifts in gene expression in both copies. Cyp19a1 is considered the most conserved ovary-factor in vertebrates, and in all teleosts investigated so far, cyp19a1A and cyp19a1B are expressed in ovaries and the brain, respectively. This is not the case in cichlids, where we find new expression patterns in two derived lineages: the A-copy gained a novel testis-function in the Ectodine lineage, whereas the B-copy is overexpressed in the testis of the speciest-richest cichlid group, the Haplochromini. This suggests that even key factors of sexual development, including the sex steroid pathway, are not conserved in fish, supporting the idea that flexibility in sexual determination and differentiation may be a driving force of speciation. PMID:23883521

  9. 2. View of north side of East Ward Street east ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    2. View of north side of East Ward Street east of North Coweta Avenue, facing northeast. - Gaskin Avenue Neighborhood, Bounded by Dart Street to east, CSX Railroad to south, Pearl & Madison Avenues to west, & Wilson & Gordon Streets to north, Douglas, Coffee County, GA

  10. 13. View of south side of East Ward Street east ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    13. View of south side of East Ward Street east of Sibett Avenue, facing southwest. - Gaskin Avenue Neighborhood, Bounded by Dart Street to east, CSX Railroad to south, Pearl & Madison Avenues to west, & Wilson & Gordon Streets to north, Douglas, Coffee County, GA

  11. 7. View of south side of East Ward Street east ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    7. View of south side of East Ward Street east of South Coweta Avenue, facing southwest. - Gaskin Avenue Neighborhood, Bounded by Dart Street to east, CSX Railroad to south, Pearl & Madison Avenues to west, & Wilson & Gordon Streets to north, Douglas, Coffee County, GA

  12. Dust Tsunamis, Blackouts and 50 deg C: Teaching MATLAB in East Africa

    NASA Astrophysics Data System (ADS)

    Trauth, M. H.

    2016-12-01

    MATLAB is the tool of choice when analyzing earth and environmental data from East Africa. The software and companion toolboxes helps to process satellite images and digital elevation models, to detect trends, cycles, and recurrent, characteristic types of climate transitions in climate time series, and to model the hydrological balance of ancient lakes. The advantage of MATLAB is that the user can do many different types of analyses with the same software, making the software very attractive for young scientists at African universities. Since 2009 we are organizing summer schools on the subject of data analysis with various tools including MATLAB in Ethiopia, Kenya and Tanzania. Throughout the summerschool, participants are instructed by teams of senior researchers, together with young scientists, some of which were participants of an earlier summerschool. The participants are themselves integrated in teaching, depending on previous knowledge, so that the boundary between teachers and learners constantly shifts or even dissolves. From the extraordinarily positive experience, but also the difficulties in teaching data analysis methods with MATLAB in East Africa is reported.

  13. Late Pliocene and Early Pleistocene Temperature Reconstructions from Paleolakes of the West Turkana and North Awash Basins, East Africa

    NASA Astrophysics Data System (ADS)

    Castañeda, I. S.; Thompson-Munson, M.; Lupien, R.; Russell, J. M.

    2015-12-01

    The Hominin Sites and Paleolakes Drilling Project (HSPDP) aims to reconstruct past environments of the East African Rift Valley from locations in close proximity to some of the world's most important fossil hominin and artifact sites. In this study, we investigate sediments from the West Turkana and North Awash Basins, which were recently drilled as part of the HSPDP. The North Awash Basin contains abundant early hominin fossils and the lakebeds of the Hadar Formation (~3.6 to ~2.9 Ma) will provide a record of climate variability during the Pliocene, prior to the intensification of Northern Hemisphere glaciation at ~2.7 Ma. The lakebeds of the Turkana Basin are Early Pleistocene in age (~1.9 to ~1.45 Ma) and span the interval that includes some the earliest fossils of Homo rudolfensis and H. ergaster/erectus. Here we examine the organic geochemistry of West Turkana and North Awash Basin sediments and investigate the use of proxies based on isoprenoid and branched glycerol dialkyl glycerol tetraethers (GDGTs) to reconstruct temperature, including TEX86 and the methylation and cyclization (MBT and CBT) ratios and relative abundances of branched GDGTs. We also examine variability in the abundances and ratios of plant leaf waxes (n-alkanes) to provide insight into past vegetation changes on the East African landscape.

  14. 4. Engine room, east end looking east toward engine #4 ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    4. Engine room, east end looking east toward engine #4 (Enterprise Diesel; reduction gear in foreground; in left rear, two D.C. generators with Ames Ironworks horizontal engine and sturtevant vertical engine - East Boston Pumping Station, Chelsea Street at Chelsea Creek, Boston, Suffolk County, MA

  15. 17. View of north side of East Ward Street east ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    17. View of north side of East Ward Street east of North McDonald Avenue, facing northwest. - Gaskin Avenue Neighborhood, Bounded by Dart Street to east, CSX Railroad to south, Pearl & Madison Avenues to west, & Wilson & Gordon Streets to north, Douglas, Coffee County, GA

  16. 20. View of south side of East Ward Street east ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    20. View of south side of East Ward Street east of South McDonald Avenue, facing southeast. - Gaskin Avenue Neighborhood, Bounded by Dart Street to east, CSX Railroad to south, Pearl & Madison Avenues to west, & Wilson & Gordon Streets to north, Douglas, Coffee County, GA

  17. The Design and Evaluation of African Language Learning Materials. Proceedings of the Spring 1984 Conference on Developing Guidelines for the Evaluation of African Language Learning Materials (East Lansing, Michigan, April 13-14, 1984).

    ERIC Educational Resources Information Center

    Dwyer, David J., Ed.

    Representatives from major institutions teaching African languages convened to discuss the design of African language textbooks and to propose guidelines for the writing of new textbooks and evaluation of existing ones. Conference papers include: "Language Acquisition Theory and Materials Construction" (Stephen Krashen); "The Structures of Verbal…

  18. Understanding teenage pregnancy in a post-apartheid South African township.

    PubMed

    Mkhwanazi, Nolwazi

    2010-05-01

    Although South Africa's total fertility rate is one of the lowest in sub-Saharan Africa, high rates of early childbearing remain a concern. Most teenage pregnancies occur among poor black and coloured South Africans. The majority of these pregnancies are said to be unwanted and unplanned and the teenager's relationships, unstable. Becoming a mother during one's teenage years is perceived to be socially, economically and physically deleterious for the teenager and her baby. This paper presents ethnographic data collected over a five-year period in the South African township of Nyanga East in the Western Cape. It draws attention to the circumstances that surround teenage pregnancy and discusses reactions to teenage pregnancies in this community. Findings highlight that despite the negative perception of teenage pregnancy within the township, particular social and cultural circumstances provided fertile ground for its occurrence. Furthermore, the paper argues that in this particular community the management of a teenage pregnancy played a functional and critical role in maintaining and reproducing social norms and ideals regarding intergenerational relationships, which ultimately ensured that the rates of early childbearing remained high.

  19. Growth pattern from birth to adulthood in African pygmies of known age.

    PubMed

    Rozzi, Fernando V Ramirez; Koudou, Yves; Froment, Alain; Le Bouc, Yves; Botton, Jérémie

    2015-07-28

    The African pygmy phenotype stems from genetic foundations and is considered to be the product of a disturbance in the growth hormone-insulin-like growth factor (GH-IGF) axis. However, when and how the pygmy phenotype is acquired during growth remains unknown. Here we describe growth patterns in Baka pygmies based on two longitudinal studies of individuals of known age, from the time of birth to the age of 25 years. Body size at birth among the Baka is within standard limits, but their growth rate slows significantly during the first two years of life. It then more or less follows the standard pattern, with a growth spurt at adolescence. Their life history variables do not allow the Baka to be distinguished from other populations. Therefore, the pygmy phenotype in the Baka is the result of a change in growth that occurs during infancy, which differentiates them from East African pygmies revealing convergent evolution.

  20. Growth pattern from birth to adulthood in African pygmies of known age

    PubMed Central

    Rozzi, Fernando V. Ramirez; Koudou, Yves; Froment, Alain; Le Bouc, Yves; Botton, Jérémie

    2015-01-01

    The African pygmy phenotype stems from genetic foundations and is considered to be the product of a disturbance in the growth hormone–insulin-like growth factor (GH–IGF) axis. However, when and how the pygmy phenotype is acquired during growth remains unknown. Here we describe growth patterns in Baka pygmies based on two longitudinal studies of individuals of known age, from the time of birth to the age of 25 years. Body size at birth among the Baka is within standard limits, but their growth rate slows significantly during the first two years of life. It then more or less follows the standard pattern, with a growth spurt at adolescence. Their life history variables do not allow the Baka to be distinguished from other populations. Therefore, the pygmy phenotype in the Baka is the result of a change in growth that occurs during infancy, which differentiates them from East African pygmies revealing convergent evolution. PMID:26218408

  1. Prevalence of Glaucoma in an Urban West African Population

    PubMed Central

    Budenz, Donald L.; Barton, Keith; Whiteside-de Vos, Julia; Schiffman, Joyce; Bandi, Jagadeesh; Nolan, Winifred; Herndon, Leon; Kim, Hanna; Hay-Smith, Graham; Tielsch, James M.

    2014-01-01

    Importance Multiple studies have found an increased prevalence, younger age at onset, and more severe course of glaucoma in people of African descent, but these findings are based on studies conducted outside Africa. Objective To determine the prevalence of glaucoma in an urban West African population of adults. Design and Setting A population-based, cross-sectional study of adults 40 years and older conducted from September 1, 2006, through December 31, 2008, from 5 communities in Tema, Ghana. Participants Participants from randomly selected clusters underwent a screening examination that consisted of visual acuity, frequency doubling perimetry, applanation tonometry, and optic disc photography. Participants who failed any of these tests were referred for complete examination, including gonioscopy, standard automated perimetry, and stereoscopic optic disc photography. Results A total of 6806 eligible participants were identified, and 5603 (82.3%) were enrolled in the study. The field examination referred 1869 participants (33.3%) to the clinic examination, and 1538 (82.2%) came for complete examination. A total of 362 participants were identified as having glaucoma of any type and category. Primary open-angle glaucoma was the underlying diagnosis in 342 participants (94.5%). The prevalence of primary open-angle glaucoma was 6.8% overall, increasing from 3.7% among those 40 to 49 years old to 14.6% among those 80 years and older, and was higher in men than in women in all age groups, with an overall male-female prevalence ratio of 1.5. Of the participants with glaucoma, 9 (2.5%) were blind using World Health Organization criteria, and only 12 (3.3%) were aware that they had glaucoma. Conclusions and Relevance The prevalence of glaucoma is higher in this urban West African population than in previous studies of people of East or South African and of non-African descent. Strategies to identify affected persons and effectively manage the burden of glaucoma are needed

  2. The power of sex: some reflections on the Caldwell's "African sexuality" thesis.

    PubMed

    Heald, S

    1995-01-01

    J.C. Caldwell et al. would like to construct a model of African society which is capable of generating ideas about the nature of sex behavior. Such a model would explain population and fertility patterns as well as those relevant to the spread of HIV. However, the author is concerned with the values and morality of sexuality in East Africa. She stresses that her intention is not to comprehensively rebut Caldwell's work, but simply to reflect upon the nature of sexuality in East Africa while drawing upon the works of Caldwell. The author's goal is to highlight areas of disagreement and to present and re-present evidence from the ethnographic record in order to move toward more satisfactory descriptive criteria with which to begin to think, as an anthropologist, about sexual morality in Africa. Sections consider Africa's alternative civilization, the lineage model, respect, the metaphor of mingling, affection, and alliance and contract.

  3. Who delivers where? The effect of obstetric risk on facility delivery in East Africa.

    PubMed

    Virgo, Sandra; Gon, Giorgia; Cavallaro, Francesca L; Graham, Wendy; Woodd, Susannah

    2017-09-01

    Skilled attendance at birth is key for the survival of pregnant women. This study investigates whether women at increased risk of maternal and newborn complications in four East African countries are more likely to deliver in a health facility than those at lower risk. Demographic and Health Survey data for Kenya 2014, Rwanda 2014-15, Tanzania 2015-16 and Uganda 2011 were used to study women with a live birth in the three years preceding the survey. A three-level obstetric risk index was created using known risk factors. Generalised linear Poisson regression was used to investigate the association between obstetric risk and facility delivery. We analysed data from 13 119 women across the four countries of whom 42-45% were considered at medium risk and 12-17% at high risk, and the remainder were at low risk. In Rwanda, 93% of all women delivered in facilities but this was lower (59-66%) in the other three countries. There was no association between a woman's obstetric risk level and her place of delivery in any country; greater wealth and more education were, however, independently strongly associated with facility delivery. In four East African countries, women at higher obstetric risk were not more likely to deliver in a facility than those with lower risk. This calls for a renewed focus on antenatal risk screening and improved communication on birth planning to ensure women with an increased chance of maternal and newborn complications are supported to deliver in facilities with skilled care. © 2017 John Wiley & Sons Ltd.

  4. Sexual learning among East African adolescents in the context of generalized HIV epidemics: A systematic qualitative meta-synthesis

    PubMed Central

    McNealy, Kim R.; Al-Khattab, Halima; Carter-Harris, Lisa; Oruche, Ukamaka Marian; Naanyu, Violet; Draucker, Claire Burke

    2017-01-01

    Background AIDS-related illness is the leading cause of mortality for adolescents in sub-Saharan Africa. Together, Kenya, Tanzania, and Uganda account for 21% of HIV-infected adolescents in sub-Saharan Africa. The United Nations framework for addressing the epidemic among adolescents calls for comprehensive sexual and reproductive health education. These HIV prevention efforts could be informed by a synthesis of existing research about the formal and informal sexual education of adolescents in countries experiencing generalized epidemics. The purpose of this study was to describe the process of sexual learning among East African adolescents living in the context of generalized HIV epidemics. Methods Qualitative metasynthesis, a systematic procedure for integrating the results of multiple qualitative studies addressing a similar phenomenon, was used. Thirty-two research reports met study inclusion criteria. The reports were assessed in a four-step analytic process: appraisal, classification of findings, synthesis of findings, and construction of a framework depicting the process of sexual learning in this population. Results The framework includes three phases of sexual learning: 1) being primed for sex, 2) making sense of sex, and 3) having sexual experiences. Adolescents were primed for sex through gender norms, cultural practices, and economic structures as well as through conversations and formal instruction. They made sense of sex by acquiring information about sexual intercourse, reproduction and pregnancy, sexually transmitted infections, and relationships and by developing a variety of beliefs and attitudes about these topics. Some adolescents described having sexual experiences that met wants or needs, but many experienced sex that was coerced or violent. Whether sex was wanted, coerced, or violent, adolescents experienced worry about sexually transmitted infections or premarital pregnancy. Conclusions The three phases of sexual learning interact to shape

  5. Equality in Maternal and Newborn Health: Modelling Geographic Disparities in Utilisation of Care in Five East African Countries.

    PubMed

    Ruktanonchai, Corrine W; Ruktanonchai, Nick W; Nove, Andrea; Lopes, Sofia; Pezzulo, Carla; Bosco, Claudio; Alegana, Victor A; Burgert, Clara R; Ayiko, Rogers; Charles, Andrew Sek; Lambert, Nkurunziza; Msechu, Esther; Kathini, Esther; Matthews, Zoë; Tatem, Andrew J

    2016-01-01

    Geographic accessibility to health facilities represents a fundamental barrier to utilisation of maternal and newborn health (MNH) services, driving historically hidden spatial pockets of localized inequalities. Here, we examine utilisation of MNH care as an emergent property of accessibility, highlighting high-resolution spatial heterogeneity and sub-national inequalities in receiving care before, during, and after delivery throughout five East African countries. We calculated a geographic inaccessibility score to the nearest health facility at 300 x 300 m using a dataset of 9,314 facilities throughout Burundi, Kenya, Rwanda, Tanzania and Uganda. Using Demographic and Health Surveys data, we utilised hierarchical mixed effects logistic regression to examine the odds of: 1) skilled birth attendance, 2) receiving 4+ antenatal care visits at time of delivery, and 3) receiving a postnatal health check-up within 48 hours of delivery. We applied model results onto the accessibility surface to visualise the probabilities of obtaining MNH care at both high-resolution and sub-national levels after adjusting for live births in 2015. Across all outcomes, decreasing wealth and education levels were associated with lower odds of obtaining MNH care. Increasing geographic inaccessibility scores were associated with the strongest effect in lowering odds of obtaining care observed across outcomes, with the widest disparities observed among skilled birth attendance. Specifically, for each increase in the inaccessibility score to the nearest health facility, the odds of having skilled birth attendance at delivery was reduced by over 75% (0.24; CI: 0.19-0.3), while the odds of receiving antenatal care decreased by nearly 25% (0.74; CI: 0.61-0.89) and 40% for obtaining postnatal care (0.58; CI: 0.45-0.75). Overall, these results suggest decreasing accessibility to the nearest health facility significantly deterred utilisation of all maternal health care services. These results

  6. Evaluating COSMO's lake module (FLake) for an East-African lake using a comprehensive set of lake temperature profiles

    NASA Astrophysics Data System (ADS)

    Thiery, W.; Martynov, A.; Darchambeau, F.; Demuzere, M.; van Lipzig, N.

    2012-04-01

    The African great lakes are of utmost importance for the local economy (fishing), as well as being essential to the survival of the local people. During last decades, these lakes have been changing rapidly and their evolution is a major concern. Hence, it is important to correctly represent them in regional climate models for simulations over tropical Africa. However, so far lake models have been developed and tested primarily for boreal conditions. In this study, for the first time the freshwater lake model FLake is evaluated over East-Africa, more specifically over lake Kivu. Meteorological observations from January 2003 to December 2008 from an automatic weather station in Bukavu, DRC, are used to drive the standalone version of FLake. For the evaluation, a unique dataset is used which contains over 200 temperature profiles recorded since 2002. Results show that FLake in its default configuration is very successful at reproducing both the timing and magnitude of the seasonal cycle at 5 m depth. Flake captures that this seasonality is regulated by the water vapour pressure, which constrains evaporation except during summer (JJA). A positive bias of ~1 K is attributed to the driving data, which are collected in the city and are therefore expected to mirror higher temperatures and lower wind speeds compared to the lake surface. The evaluation also showed that driving FLake with Era-Interim from the nearest pixel does only slightly deteriorate the model performance. Using forcing fields from the Canadian Regional Climate Model, version 5 (CRCM5) simulation output gives similar performance as Era-Interim. Furthermore, a drawback of FLake is that it does not account for salinity and its effect upon lake stratification, and therefore requires artificial initial conditions for both lake depth and bottom temperature in order to reproduce the correct mixing regime in lake Kivu. Further research will therefore aim at improving FLake's representation of tropical lakes.

  7. Metallogenic evolution of uranium deposits in the Middle East and North Africa deposits

    NASA Astrophysics Data System (ADS)

    Howari, Fares; Goodell, Philip; Salman, Abdulaty

    2016-02-01

    This paper is briefly involved in classification and distributions of the Middle East and North Africa (MENA) uranium deposits. The study of these mineral systems can significantly contribute to our further understanding of the metallogeny of known and poorly explored deposits. This provides contribution to, and further enhancement of, current classifications and metallogenic models of uranium systems, allowing researchers to emphasize on unknown or poorly studied mineral systems found in MENA. The present study identified eight metallogenic types of uranium associated with: 1) the Archean rocks and intra-cratonic basins, 2) the Pan-African granites and rhyolites which are characterized by igneous activity, 3) Phanerozoic (Paleozoic) clastics, these deposits are the sedimentological response to Pan African magmatism, 4) Mesozoic (basal) clastics type e.g. Nubia sandstones which are characterized by uranium minerals, 5) regional sedimentary phosphate deposits which are categorized as geosynclinal, or continental margin deposits, on the shelf of the Tethys Ocean, 6) Cenozoic Intracratonic Felsic Magmatism of the Tibesti and Hoggar, and the sandstone U deposits of adjoining Niger. These are similar to the Pan-African magmatism metallogenic, 7) Calcretes, and 8) Resistate minerals which are often enriched in rare earth elements, sometimes including uranium. They are thus sometimes considered as U resources but poorly explored in the MENA region. These metallogenic types are described and discussed in the current paper.

  8. Upper mantle anisotropy from teleseismic SKS splitting beneath Lützow-Holm Bay Region, East Antarctica

    USGS Publications Warehouse

    Usui, Y.; Kanao, M.; Kubo, A.; Hiramatsu, Y.; Negishi, H.

    2007-01-01

    Investigations of SKS wave splitting of teleseismic events from digital seismographs recorded at eight stations around the Lützow-Holm Bay Region have lead to understanding the evolution of the Antarctic Plate. The observed delay times of SKS splitting are up to 1.3 s, which are generally equal to the global average. A two-layer model reveals that the lower layer anisotropy is caused by the recent asthenospheric flow, as compared with the Absolute Plate Motion by the HS3-NUVEL1 model. The upper layer anisotropy corresponds well to polarization of NE–SW convergence direction between East and West Gondwana in Pan-African age. We suggest that the upper layer anisotropy was formed during Pan-African orogeny and was possibly influenced by the preexisting structure during Gondwana break-up. The origin of anisotropy is the Lattice Preferred Orientation of olivine which was caused by both paleo-tectonic events and the recent asthenospheric flow.

  9. Martian canyons and African rifts: Structural comparisons and implications

    NASA Technical Reports Server (NTRS)

    Frey, H. V.

    1978-01-01

    The resistant parts of the canyon walls of the Martian rift complex Valled Marineris were used to infer an earlier, less eroded reconstruction of the major roughs. The individual canyons were then compared with individual rifts of East Africa. When measured in units of planetary radius, Martian canyons show a distribution of lengths nearly identical to those in Africa, both for individual rifts and for compound rift systems. A common mechanism which scales with planetary radius is suggested. Martian canyons are significantly wider than African rifts. The overall pattern of the rift systems of Africa and Mars are quite different in that the African systems are composed of numerous small faults with highly variable trend. On Mars the trends are less variable; individual scarps are straighter for longer than on earth. This is probably due to the difference in tectonic histories of the two planets: the complex history of the earth and the resulting complicated basement structures influence the development of new rifts. The basement and lithosphere of Mars are inferred to be simple, reflecting a relatively inactive tectonic history prior to the formation of the canyonlands.

  10. Host acceptance, suitability, and effects of host deprivation on the West African egg parasitoid Telenomus isis (Hymenoptera: Scelionidae) reared on East African stemborers under varying temperature and relative humidity regimens.

    PubMed

    Bruce, Anani Yaovi; Schulthess, Fritz; Mueke, Jones

    2009-06-01

    Scelionid egg parasitoids of Telenomus spp. have been shown to significantly affect noctuid stemborer populations and yields of maize in western Africa. One of them, T. isis, has never been reported from eastern Africa and was introduced into the laboratories of the International Centre of Insect Physiology and Ecology, Kenya. This study evaluates the biotic potential of T. isis using East African stemborers as hosts. Host acceptance was tested using 15 lepidopteran borer species. Only noctuid stemborers were accepted for oviposition by T. isis. Sesamia calamistis Hampson, Sesamia nonagrioides (Lefebvre), and Busseola fusca (Fuller) were further used to study the effect of host species, host age, duration of host deprivation, temperature, and humidity on the performance of the parasitoid. In contrast to sex ratio, developmental time, parasitism, and parasitoid emergence varied significantly with host species, and the former two decreased with the age of host eggs. Female longevity increased with duration of host deprivation, whereas average lifetime fecundity decreased, probably because of oocyte resorption. T. isis successfully developed between 18 and 32 degrees C at both low (40-50%) and high (70-80%) relative humidity regimens, but temperature played a more critical role. Using the modified Logan model, the lower and upper temperature thresholds for development were estimated at 11.5 and 37.5 degrees C, respectively, with an optimum at 30.5 degrees C for both humidity regimens. Depending on temperature and relative humidity regimen, the intrinsic rate of increase (r(m)) varied from 0.077 to 0.300, net reproductive rate (R(o)) from 7.70 to 83.96, and generation time (G) from 11 to 38 d. The results of this study indicate that T. isis is likely to establish in eastern Africa.

  11. Higher Educational Cost-Sharing, Dual-Track Tuition Fees, and Higher Educational Access: The East African Experience

    ERIC Educational Resources Information Center

    Marcucci, Pamela; Johnstone, D. Bruce; Ngolovoi, Mary

    2008-01-01

    Three universal demands characterize higher education globally: the demand for higher quality, for increased access, and for greater equity. In East Africa, where resources are highly constrained, no nation has been able to meet these demands on the basis of public expenditures alone. Instead countries have had to increase resources from nonpublic…

  12. Rift Valley Fever Virus Circulating among Ruminants, Mosquitoes and Humans in the Central African Republic.

    PubMed

    Nakouné, Emmanuel; Kamgang, Basile; Berthet, Nicolas; Manirakiza, Alexandre; Kazanji, Mirdad

    2016-10-01

    Rift Valley fever virus (RVFV) causes a viral zoonosis, with discontinuous epizootics and sporadic epidemics, essentially in East Africa. Infection with this virus causes severe illness and abortion in sheep, goats, and cattle as well as other domestic animals. Humans can also be exposed through close contact with infectious tissues or by bites from infected mosquitoes, primarily of the Aedes and Culex genuses. Although the cycle of RVFV infection in savannah regions is well documented, its distribution in forest areas in central Africa has been poorly investigated. To evaluate current circulation of RVFV among livestock and humans living in the Central African Republic (CAR), blood samples were collected from sheep, cattle, and goats and from people at risk, such as stock breeders and workers in slaughterhouses and livestock markets. The samples were tested for anti-RVFV immunoglobulin M (IgM) and immunoglobulin G (IgG) antibodies. We also sequenced the complete genomes of two local strains, one isolated in 1969 from mosquitoes and one isolated in 1985 from humans living in forested areas. The 1271 animals sampled comprised 727 cattle, 325 sheep, and 219 goats at three sites. The overall seroprevalence of anti-RVFV IgM antibodies was 1.9% and that of IgG antibodies was 8.6%. IgM antibodies were found only during the rainy season, but the frequency of IgG antibodies did not differ significantly by season. No evidence of recent RVFV infection was found in 335 people considered at risk; however, 16.7% had evidence of past infection. Comparison of the nucleotide sequences of the strains isolated in the CAR with those isolated in other African countries showed that they belonged to the East/Central African cluster. This study confirms current circulation of RVFV in CAR. Further studies are needed to determine the potential vectors involved and the virus reservoirs.

  13. Reappraisal of the Trophic Ecology of One of the World's Most Threatened Spheniscids, the African Penguin.

    PubMed

    Connan, Maëlle; Hofmeyr, G J Greg; Pistorius, Pierre A

    2016-01-01

    Many species of seabirds, including the only penguin species breeding on the African continent, are threatened with extinction. The world population of the endangered African penguin Spheniscus demersus has decreased from more than 1.5 million individuals in the early 1900s to c.a. 23 000 pairs in 2013. Determining the trophic interactions of species, especially those of conservation concern, is important when declining numbers are thought to be driven by food limitation. By and large, African penguin dietary studies have relied on the identification of prey remains from stomach contents. Despite all the advantages of this method, it has well known biases. We therefore assessed the African penguin's diet, using stable isotopes, at two colonies in Algoa Bay (south-east coast of South Africa). These represent over 50% of the world population. Various samples (blood, feathers, egg membranes) were collected for carbon and nitrogen stable isotope analyses. Results indicate that the trophic ecology of African penguins is influenced by colony, season and age class, but not adult sex. Isotopic niches identified by standard Bayesian ellipse areas and convex hulls, highlighted differences among groups and variability among individual penguins. Using Bayesian mixing models it was for the first time shown that adults target chokka squid Loligo reynaudii for self-provisioning during particular stages of their annual cycle, while concurrently feeding their chicks primarily with small pelagic fish. This has important ramifications and means that not only pelagic fish, but also squid stocks, need to be carefully managed in order to allow population recovery of African penguin.

  14. African Ancestry Is Associated with Asthma Risk in African Americans

    PubMed Central

    Pino-Yanes, María; Wade, Michael S.; Pérez-Méndez, Lina; Kittles, Rick A.; Wang, Deli; Papaiahgari, Srinivas; Ford, Jean G.; Kumar, Rajesh; Garcia, Joe G. N.

    2012-01-01

    Background Asthma is a common complex condition with clear racial and ethnic differences in both prevalence and severity. Asthma consultation rates, mortality, and severe symptoms are greatly increased in African descent populations of developed countries. African ancestry has been associated with asthma, total serum IgE and lower pulmonary function in African-admixed populations. To replicate previous findings, here we aimed to examine whether African ancestry was associated with asthma susceptibility in African Americans. In addition, we examined for the first time whether African ancestry was associated with asthma exacerbations. Methodology/Principal Findings After filtering for self-reported ancestry and genotype data quality, samples from 1,117 self-reported African-American individuals from New York and Baltimore (394 cases, 481 controls), and Chicago (321 cases followed for asthma exacerbations) were analyzed. Genetic ancestry was estimated based on ancestry informative markers (AIMs) selected for being highly divergent among European and West African populations (95 AIMs for New York and Baltimore, and 66 independent AIMs for Chicago). Among case-control samples, the mean African ancestry was significantly higher in asthmatics than in non-asthmatics (82.0±14.0% vs. 77.8±18.1%, mean difference 4.2% [95% confidence interval (CI):2.0–6.4], p<0.0001). This association remained significant after adjusting for potential confounders (odds ratio: 4.55, 95% CI: 1.69–12.29, p = 0.003). African ancestry failed to show an association with asthma exacerbations (p = 0.965) using a model based on longitudinal data of the number of exacerbations followed over 1.5 years. Conclusions/Significance These data replicate previous findings indicating that African ancestry constitutes a risk factor for asthma and suggest that elevated asthma rates in African Americans can be partially attributed to African genetic ancestry. PMID:22235241

  15. The upper mantle shear wave velocity structure of East Africa derived from Rayleigh wave tomography

    NASA Astrophysics Data System (ADS)

    O'Donnell, J.; Nyblade, A.; Adams, A. N.; Weeraratne, D. S.; Mulibo, G.; Tugume, F.

    2012-12-01

    An expanded model of the three-dimensional shear wave velocity structure of the upper mantle beneath East Africa has been developed using data from the latest phases of the AfricaArray East African Seismic Experiment in conjunction with data from preceding studies. The combined dataset consists of 331 events recorded on a total of 95 seismic stations spanning Kenya, Uganda, Tanzania, Zambia and Malawi. In this latest study, 149 events were used to determine fundamental mode Rayleigh wave phase velocities at periods ranging from 20 to 182 seconds using the two-plane-wave method. These were subsequently combined with the similarly processed published measurements and inverted for an updated upper mantle three-dimensional shear wave velocity model. Newly imaged features include a substantial fast anomaly in eastern Zambia that may have exerted a controlling influence on the evolution of the Western Rift Branch. Furthermore, there is a suggestion that the Eastern Rift Branch trends southeastward offshore eastern Tanzania.

  16. A Panel of Ancestry Informative Markers for the Complex Five-Way Admixed South African Coloured Population

    PubMed Central

    Daya, Michelle; van der Merwe, Lize; Galal, Ushma; Möller, Marlo; Salie, Muneeb; Chimusa, Emile R.; Galanter, Joshua M.; van Helden, Paul D.; Henn, Brenna M.; Gignoux, Chris R.; Hoal, Eileen

    2013-01-01

    Admixture is a well known confounder in genetic association studies. If genome-wide data is not available, as would be the case for candidate gene studies, ancestry informative markers (AIMs) are required in order to adjust for admixture. The predominant population group in the Western Cape, South Africa, is the admixed group known as the South African Coloured (SAC). A small set of AIMs that is optimized to distinguish between the five source populations of this population (African San, African non-San, European, South Asian, and East Asian) will enable researchers to cost-effectively reduce false-positive findings resulting from ignoring admixture in genetic association studies of the population. Using genome-wide data to find SNPs with large allele frequency differences between the source populations of the SAC, as quantified by Rosenberg et. al's -statistic, we developed a panel of AIMs by experimenting with various selection strategies. Subsets of different sizes were evaluated by measuring the correlation between ancestry proportions estimated by each AIM subset with ancestry proportions estimated using genome-wide data. We show that a panel of 96 AIMs can be used to assess ancestry proportions and to adjust for the confounding effect of the complex five-way admixture that occurred in the South African Coloured population. PMID:24376522

  17. Is the Okavango Delta the terminus of the East African Rift System? Towards a new geodynamic model: Geodetic study and geophysical review

    NASA Astrophysics Data System (ADS)

    Pastier, Anne-Morwenn; Dauteuil, Olivier; Murray-Hudson, Michael; Moreau, Frédérique; Walpersdorf, Andrea; Makati, Kaelo

    2017-08-01

    The Okavango Graben (OG) has been considered as the terminus of the southwestern branch of the East African Rift System (EARS) since the 1970s based on fault morphology and early seismic and geophysical data. Thus it has been assumed to be an incipient rifting zone, analogous to the early stage of mature rifts in the EARS. Recent geodetic data and geophysical studies in the area bring new insights into the local crust and lithosphere, mantle activity and fault activity. In this study, we computed the velocities for three permanent GPS stations surrounding the graben and undertook a review of the new geophysical data available for the area. The northern and southern blocks of the graben show an exclusively low strike-slip displacement rate of about 1mm/year, revealing the transtensional nature of this basin. The seismic record of central and southern Africa was found to be instrumentally biased for the events recorded before 2004 and the OG may not represent the most seismically active area in Botswana anymore. Moreover, no significant lithosphere and crustal thinning is found in the tectonic structure nor any strong negative Bouguer anomaly and surface heat flux. Thus the OG does not match the classical model for a rifting zone. We propose a new geodynamic model for the deformation observed west of the EARS based on accommodation of far-field deformation due to the differential extension rates of the EARS and the displacement of the Kalahari craton relative to the Nubian plate.

  18. African, Asian or Indian enigma, the East Asian Helicobacter pylori: facts or medical myths

    PubMed Central

    GRAHAM, David Y; LU, Hong; YAMAOKA, Yoshio

    2010-01-01

    Helicobacter pylori is etiologically related to peptic ulcer disease and gastric adenocarcinomas. Reports of geographical enigmas (African, Asian, Indian and Costa Rican enigmas) are based on perceptions that clinical presentations in a population or region are not as the authors expected. We discuss the background for these enigmas and examine the evidence whether they are real or are medical myths. The African enigma was challenged almost as soon as it was proposed and recent analyses of endoscopic data have confirmed it is a myth, as H. pylori-related diseases occur in Africa at the expected frequencies. The Asian and Indian enigmas relate to gastric cancer and peptic ulcers, respectively, and when one takes the patterns of gastritis in the different regions, these enigmas disappear. The pattern of gastritis underlies and predicts the clinical outcome and the predominant pattern of gastritis has been observed to change much more rapidly than can be accounted for by changes in host genetics. There is also no evidence that these changes relate to changes in the predominant H. pylori strain. The factors that link most closely to preventing an atrophic corpus are environmental, with food preservation and diet currently assuming the most prominent roles. This focus on diseases (cancer vs duodenal ulcers) instead of the underlying patterns of gastritis has fostered, and possibly helped to perpetuate, these mythical enigmas. We suggest that a better strategy would be to focus on the pathogenesis of underlying histopathologic differences which could also lead to the identification of specific chemoprevention strategies. PMID:19426388

  19. Characteristics and predictors of oral cancer knowledge in a predominantly African American community

    PubMed Central

    Adjei Boakye, Eric; Hussaini, Adnan S.; Sujijantarat, Nanthiya; Ganesh, Rajan N.; Snider, Matthew; Thompson, Devin; Varvares, Mark A.

    2017-01-01

    Purpose To characterize smoking and alcohol use, and to describe predictors of oral cancer knowledge among a predominantly African-American population. Methods A cross-sectional study was conducted between September, 2013 among drag racers and fans in East St. Louis. Oral cancer knowledge was derived from combining questionnaire items to form knowledge score. Covariates examined included age, sex, race, marital status, education status, income level, insurance status, tobacco and alcohol use. Adjusted linear regression analysis measured predictors of oral cancer knowledge. Results Three hundred and four participants completed questionnaire; 72.7% were African Americans. Smoking rate was 26.7%, alcohol use was 58.3%, and mean knowledge score was 4.60 ± 2.52 out of 17. In final adjusted regression model, oral cancer knowledge was associated with race and education status. Compared with Caucasians, African Americans were 29% less likely to have high oral cancer knowledge (β = -0.71; 95% CI: -1.35, -0.07); and participants with a high school diploma or less were 124% less likely to have high oral cancer knowledge compared with college graduates (β = -1.24; 95% CI: -2.44, -0.41). Conclusions There was lower oral cancer knowledge among African Americans and those with low education. The prevalence of smoking was also very high. Understanding predictors of oral cancer knowledge is important in future design of educational interventions specifically targeted towards high-risk group for oral cancer. PMID:28545057

  20. Identification of dust source regions and dust emission trends across North Africa and the Middle East using MISR satellite observations

    NASA Astrophysics Data System (ADS)

    Yu, Y.; Kalashnikova, O. V.; Garay, M. J.; Notaro, M.

    2017-12-01

    Global arid and semi-arid regions supply 1100 to 5000 Tg of Aeolian dust to the atmosphere each year, primarily from North Africa and secondarily from the Middle East. Previous dust source identification methods, based on either remotely-sensed aerosol optical depth (AOD) or dust activity, yield distinct dust source maps, largely due to the limitations in each method and remote-sensing product. Here we apply a novel motion-based method for dust source identification. Dust plume thickness and motion vectors from Multi-angle Imaging SpectroRadiometer (MISR) Cloud Motion Vector Product (CMVP) are examined to identify the regions with high frequency of fast moving-dust plumes, by season. According to MISR CMVP, Bodele depression is the most important dust source across North Africa, consistent with previous studies. Seasonal variability of dust emission across the North Africa is largely driven by climatology of wind and precipitation, featuring the influence of Sharav Cyclone and western African monsoon. In the Middle East, Iraq, Kuwait, and eastern Saudi Arabia are identified as dust source regions, especially during summer months, when the Middle Eastern Shamal wind is active. Furthermore, dust emission trend at each dust source are diagnosed from the motion-based dust source dataset. Increase in dust emission from the Fertile Crescent, Sahel, and eastern African dust sources are identified from MISR CMVP, implying potential contribution from these dust sources to the upward trend in AOD and dust AOD over the Middle East in the 21st century. By comparing with various dust source identification studies, we conclude that the motion-based identification of dust sources is an encouraging alternative and compliment to the AOD-only source identification method.

  1. Geochemistry and fluxes of volatiles in the Magadi and Natron thermal springs, East African Rift

    NASA Astrophysics Data System (ADS)

    Lee, H.; Fischer, T. P.; Muirhead, J.; Ebinger, C. J.; Kattenhorn, S. A.; Sharp, Z. D.; Sano, Y.; Takahata, N.

    2016-12-01

    The Magadi and Natron basin (MNB) is in the earliest stages of continental rifting (<10 Ma) in the East African Rift, and is bounded by numerous normal faults releasing a significant amount of CO2 (4.05 Mt/yr). Although many thermal springs have been observed along fault zones, sources and fluxes of volatiles from these fluids are poorly known. This study reports geochemistry and fluxes of dissolved gases in thermal springs of the MNB (T = 36.8 - 83.5°C and pH = 8.5 - 10.3), including major gas chemistry, d13C-CO2, d15N-N2, and 3He/4He ratios. N2 (< 94.7 vol%) is the most abundant gas, with minor air contamination (mean value of O2 = 1.79 vol%). The majority of CO2 (mean = 11.8 vol%) is dissolved in alkaline waters. Abundant CH4 concentrations (19.3 and 25.1 vol%) are observed only in high temperature (82.3 - 83.5°C) samples. Mean values of Ar and He are 1.75 and 0.59 vol%, respectively. d13C-CO2 (-5.68 to 1.62‰) and CO2/3He (7.24 x 108 - 1.81 x 1011) values show that CO2 originates from both mantle and limestone. d15N-N2 (-1.46 to 0.35‰) and N2/3He (3.92 x 106 - 1.33 x 109) values indicate that the major source of N2 is atmospheric, with a minor input of mantle N2 (fmantle < 22%), except for an anomalous biogenic sample (d15N-N2 = 5.93‰). 3He/4He ratios (0.64 - 4.00 Ra) suggest contributions of radiogenic 4He derived from a crustal source. 4He flux rates (3.64 x 1011 - 3.34 x 1014 atoms/m2 sec) calculated using spring flow rates are much greater than reported mean of continental flux values (4.18x1010 atoms/m2 sec), implying that magma intrusions or widespread normal faulting may help to mobilize crustal 4He in the study area. Total flux values (mol/yr) of CO2, N2, 3He, and 4He are 7.91 x 106, 1.77 x 107, 8.18, and 9.33 x 104, respectively. In particular, the total CO2 flux of springs is 0.01% of the total diffuse CO2 flux reported in the region. Our results reveal an interaction between mantle-derived volatiles and continental crust during early stage

  2. Reappraisal of the Trophic Ecology of One of the World’s Most Threatened Spheniscids, the African Penguin

    PubMed Central

    Connan, Maëlle; Hofmeyr, G. J. Greg; Pistorius, Pierre A

    2016-01-01

    Many species of seabirds, including the only penguin species breeding on the African continent, are threatened with extinction. The world population of the endangered African penguin Spheniscus demersus has decreased from more than 1.5 million individuals in the early 1900s to c.a. 23 000 pairs in 2013. Determining the trophic interactions of species, especially those of conservation concern, is important when declining numbers are thought to be driven by food limitation. By and large, African penguin dietary studies have relied on the identification of prey remains from stomach contents. Despite all the advantages of this method, it has well known biases. We therefore assessed the African penguin’s diet, using stable isotopes, at two colonies in Algoa Bay (south-east coast of South Africa). These represent over 50% of the world population. Various samples (blood, feathers, egg membranes) were collected for carbon and nitrogen stable isotope analyses. Results indicate that the trophic ecology of African penguins is influenced by colony, season and age class, but not adult sex. Isotopic niches identified by standard Bayesian ellipse areas and convex hulls, highlighted differences among groups and variability among individual penguins. Using Bayesian mixing models it was for the first time shown that adults target chokka squid Loligo reynaudii for self-provisioning during particular stages of their annual cycle, while concurrently feeding their chicks primarily with small pelagic fish. This has important ramifications and means that not only pelagic fish, but also squid stocks, need to be carefully managed in order to allow population recovery of African penguin. PMID:27434061

  3. Breast cancer incidence, stage, treatment and survival in ethnic groups in South East England

    PubMed Central

    Jack, R H; Davies, E A; Møller, H

    2009-01-01

    Studies from the US have shown variations in breast cancer incidence, stage distribution, treatment and survival between ethnic groups. Data on 35 631 women diagnosed with breast cancer in South East England between 1998 and 2003 with self-assigned ethnicity information available were analysed. Results are reported for White, Indian, Pakistani, Bangladeshi, Black Caribbean, Black African and Chinese women. Age-standardised breast cancer incidence rate ratios, patterns of stage of disease at diagnosis, treatment, overall and breast cancer-specific survival were examined. All ethnic groups studied had lower age-standardised breast cancer incidence rates than White women, with Bangladeshi women having the lowest rate ratio (0.23, 95% CI: 0.20–0.26). White women were the most likely to have a stage recorded at diagnosis (adjusted proportion 75%), and least likely to be diagnosed with metastatic disease (7%). Black African women were the least likely to have a record of cancer surgery (63%) or hormone therapy (32%), and most likely to receive chemotherapy (38%). After fully adjusting for age, socioeconomic deprivation, stage of disease and treatment received, there was no significant variation in breast cancer-specific survival. However, Black African women had significantly worse overall survival (hazard ratio 1.24, P=0.025). These findings suggest that a strategy of earlier detection should be pursued in Black and South Asian women. PMID:19127253

  4. First records of Hippocampus algiricus in the Canary Islands (north-east Atlantic Ocean) with an observation of hybridization with Hippocampus hippocampus.

    PubMed

    Otero-Ferrer, F; Herrera, R; López, A; Socorro, J; Molina, L; Bouza, C

    2015-10-01

    Morphometric and genetic analyses confirmed the first records of the West African seahorse Hippocampus algiricus at Gran Canaria Island (north-east Atlantic Ocean), and also the first evidence of interspecific hybridization in seahorses. These results provide additional data on the distribution of H. algiricus that may help to establish future conservation strategies, and uncover a new potential sympatric scenario between H. algiricus and Hippocampus hippocampus. © 2015 The Fisheries Society of the British Isles.

  5. The Genetic Structure and History of Africans and African Americans

    PubMed Central

    Tishkoff, Sarah A.; Reed, Floyd A.; Friedlaender, Françoise R.; Ehret, Christopher; Ranciaro, Alessia; Froment, Alain; Hirbo, Jibril B.; Awomoyi, Agnes A.; Bodo, Jean-Marie; Doumbo, Ogobara; Ibrahim, Muntaser; Juma, Abdalla T.; Kotze, Maritha J.; Lema, Godfrey; Moore, Jason H.; Mortensen, Holly; Nyambo, Thomas B.; Omar, Sabah A.; Powell, Kweli; Pretorius, Gideon S.; Smith, Michael W.; Thera, Mahamadou A.; Wambebe, Charles; Weber, James L.; Williams, Scott M.

    2010-01-01

    Africa is the source of all modern humans, but characterization of genetic variation and of relationships among populations across the continent has been enigmatic. We studied 121 African populations, four African American populations, and 60 non-African populations for patterns of variation at 1327 nuclear microsatellite and insertion/deletion markers. We identified 14 ancestral population clusters in Africa that correlate with self-described ethnicity and shared cultural and/or linguistic properties. We observed high levels of mixed ancestry in most populations, reflecting historical migration events across the continent. Our data also provide evidence for shared ancestry among geographically diverse hunter-gatherer populations (Khoesan speakers and Pygmies). The ancestry of African Americans is predominantly from Niger-Kordofanian (~71%), European (~13%), and other African (~8%) populations, although admixture levels varied considerably among individuals. This study helps tease apart the complex evolutionary history of Africans and African Americans, aiding both anthropological and genetic epidemiologic studies. PMID:19407144

  6. Microhabitat use, trophic patterns, and the evolution of brain structure in African cichlids.

    PubMed

    Huber, R; van Staaden, M J; Kaufman, L S; Liem, K F

    1997-01-01

    The species assemblages of cichlids in the three largest African Great Lakes are among the richest concentrations of vertebrate species on earth. The faunas are broadly similar in terms of trophic diversity, species richness, rates of endemism, and taxonomic composition, yet they are historically independent of each other. Hence, they offer a true and unique evolutionary experiment to test hypotheses concerning the mutual dependencies of ecology and brain morphology. We examined the brains of 189 species of cichlids from the three large lakes: Victoria, Tanganyika, and Malawi. A first paper demonstrated that patterns of evolutionary change in cichlid brain morphology are similar across taxonomic boundaries as well as across the three lakes [van Staaden et al., 1995 ZACS 98: 165-178]. Here we report a close relationship between the relative sizes of various brain structures and variables related to the utilization of habitat and prey. Causality is difficult to assign in this context, nonetheless, prey size and agility, turbidity levels, depth, and substrate complexity are all highly predictive of variation in brain structure. Areas associated with primary sensory functions such as vision and taste relate significantly to differences in feeding habits. Turbidity and depth are closely associated with differences in eye size, and large eyes are associated with species that pick plankton from the water column. Piscivorous taxa and others that utilize motile prey are characterized by a well developed optic tectum and a large cerebellum compared to species that prey on molluscs or plants. Structures relating to taste are well developed in species feeding on benthos over muddy or sandy substrates. The data militated against the existence of compensatory changes in brain structure. Thus enhanced development of a particular function is generally not accompanied by a parallel reduction of structures related to other modalities. Although genetic and environmental influences

  7. African American Males. A Critical Link in the African American Family.

    ERIC Educational Resources Information Center

    Jones, Dionne J., Ed.

    African Americans are experiencing extreme stress in the United States, and African-American males appear to suffer the most. The chapters in this volume examine some of the issues confronting African-American men today. They include: (1) "Introduction" (Dionne J. Jones); (2) "Reaffirming Young African American Males: Mentoring and…

  8. The TG/HDL-C ratio does not predict insulin resistance in overweight women of African descent: a study of South African, African American and West African women.

    PubMed

    Knight, Michael G; Goedecke, Julia H; Ricks, Madia; Evans, Juliet; Levitt, Naomi S; Tulloch-Reid, Marshall K; Sumner, Anne E

    2011-01-01

    Women of African descent have a high prevalence of diseases caused by insulin resistance. To positively impact cardiometabolic health in Black women, effective screening tests for insulin resistance must be identified. Recently, the TG/HDL-C ratio has been recommended as a tool to predict insulin resistance in overweight people. While the ratio predicts insulin resistance in White women, it is ineffective in African American women. As there are no data for African women, we tested the ability of the TG/HDL-C ratio to predict insulin resistance in Black women from South Africa, West Africa and the United States. For comparison, the ratio was also tested in White women from South Africa. Participants were 801 women (157 Black South African, 382 African American, 119 West African, 143 White South African, age 36 +/- 9y [mean +/- SD]). Standardized scores were created from log-transformed homeostasis model assessment-insulin resistance values from each population. Participants in the upper third of their population distribution were classified as insulin-resistant. To predict insulin resistance by the TC/HDL-C ratio, area under the receiver operating characteristic (AUC-ROC) curve was used and criteria were: 0.50 for no discrimination and > or = 0.70 for acceptable. Seventy-one percent of the Black women were overweight vs 51% of White women (P<.01). In overweight White women, AUC-ROC curve for prediction of insulin resistance by TG/HDL-C was 0.76 +/- 0.06, but below the 0.70 threshold in each group of overweight Black women (Black South African: 0.64 +/- 0.06, African American: 0.66 +/- 0.03, and West African: 0.63 +/- 0.07). Therefore, TG/HDL-C does not predict insulin resistance in overweight African American women and this investigation extends that finding to overweight Black South African and West African women. Resources to identify effective markers of insulin resistance are needed to improve cardiometabolic health in women of African descent.

  9. Nuclear and isotopic techniques applied to supporting nutritional studies in East Asia and Pacific Countries: IAEA's contributions over 20 years.

    PubMed

    Kim, Seong-Ai; Miranda-da-Cruz, B; Mokhtar, Najat; Iyengar, Venkatesh

    2004-01-01

    The world's scientific community has recognized that isotopic techniques play a vital role in monitoring the effectiveness of nutrition intervention by providing precise data on absorption, bioavailablity and interaction of various micronutrients in a cost effective manner. The International Atomic Energy Agency (IAEA) has been supporting many such health related studies in Member States from developing countries using nuclear and isotopic methods for over 20 years. This report documents the Agency's support for a variety of projects in East Asia and Pacific countries to assess body composition, total energy expenditure, nutrient intake, osteoporosis, infection, vitamin and mineral bioavailability as well as food composition. The IAEA spent a total of 10,302,356 US dollars through Coordinated Research Projects (CRP) and Technical Cooperation Projects (TCP) over the past 20 years. Out of this only 2,732,802, US dollars or 26.5% was used by the East Asia and Pacific countries. While the participation of East Asia and Pacific countries was strong in CRPs and moderate in regional TCPs, they did not participate in national TCPs at all. The non-participation under national TCPs is a serious deficiency when compared with Latin American and African regions and therefore, more participation from the East Asia and Pacific countries in national TCPs is strongly encouraged in the future.

  10. Africans in America.

    ERIC Educational Resources Information Center

    Hart, Ayanna; Spangler, Earl

    This book introduces African-American history and culture to children. The first Africans in America came from many different regions and cultures, but became united in this country by being black, African, and slaves. Once in America, Africans began a long struggle for freedom which still continues. Slavery, the Civil War, emancipation, and the…

  11. 48. AUXILIARY CHAMBER (EAST END), VIEW LOOKING EAST SHOWING ELECTRICAL ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    48. AUXILIARY CHAMBER (EAST END), VIEW LOOKING EAST SHOWING ELECTRICAL PENETRATION AND AIR LOCK (LOCATION GGG) - Shippingport Atomic Power Station, On Ohio River, 25 miles Northwest of Pittsburgh, Shippingport, Beaver County, PA

  12. A roaring trade? The legal trade in Panthera leo bones from Africa to East-Southeast Asia

    PubMed Central

    Loveridge, Andrew J.; Newton, David J.; Macdonald, David W.

    2017-01-01

    The African lion is the only big cat listed on CITES Appendix II, and the only one for which international commercial trade is legal under CITES. The trade in lion body parts, and especially the contentious trade in bones from South Africa to Asia, has raised concerns spanning continents and cultures. Debates were amplified at the 2016 CITES Conference of the Parties (CoP17) when a proposal to up-list lions to Appendix I was not supported and a compromise to keep them on Appendix II, with a bone trade quota for South Africa, was reached instead. CoP17 underscored a need for further information on the lion bone trade and the consequences for lions across the continent. Legal international trade in bones to Asia, allegedly to supply the substitute ‘tiger bone’ market, began in South Africa in February 2008 when the first CITES permits were issued. It was initially unclear the degree to which bones were sourced from captive-origin lions, and whether trade was a threat to wild lion populations. Our original assessment of the legal CITES-permitted lion bone trade from South Africa to East-Southeast Asia was for the period 2008–2011 (published 2015). In this paper, we consolidate new information that has become available for 2012–2016, including CITES reports from other African countries, and data on actual exports for three years to 2016 supplied by a freight forwarding company. Thus, we update the figures on the legal trade in lion bones from Africa to East-Southeast Asia in the period 2008–2016. We also contextualise the basis for global concerns by reviewing the history of the trade and its relation to tigers, poaching and wildlife trafficking. CITES permits issued to export bones escalated from ±314y-1 skeletons from 2008–2011, to ±1312y-1 skeletons from 2013–2015. South Africa was the only legal exporter of bones to Asia until 2013 when Namibia issued permits to export skeletons to Vietnam. While CITES permits to export ±5363 skeletons from Africa

  13. A roaring trade? The legal trade in Panthera leo bones from Africa to East-Southeast Asia.

    PubMed

    Williams, Vivienne L; Loveridge, Andrew J; Newton, David J; Macdonald, David W

    2017-01-01

    The African lion is the only big cat listed on CITES Appendix II, and the only one for which international commercial trade is legal under CITES. The trade in lion body parts, and especially the contentious trade in bones from South Africa to Asia, has raised concerns spanning continents and cultures. Debates were amplified at the 2016 CITES Conference of the Parties (CoP17) when a proposal to up-list lions to Appendix I was not supported and a compromise to keep them on Appendix II, with a bone trade quota for South Africa, was reached instead. CoP17 underscored a need for further information on the lion bone trade and the consequences for lions across the continent. Legal international trade in bones to Asia, allegedly to supply the substitute 'tiger bone' market, began in South Africa in February 2008 when the first CITES permits were issued. It was initially unclear the degree to which bones were sourced from captive-origin lions, and whether trade was a threat to wild lion populations. Our original assessment of the legal CITES-permitted lion bone trade from South Africa to East-Southeast Asia was for the period 2008-2011 (published 2015). In this paper, we consolidate new information that has become available for 2012-2016, including CITES reports from other African countries, and data on actual exports for three years to 2016 supplied by a freight forwarding company. Thus, we update the figures on the legal trade in lion bones from Africa to East-Southeast Asia in the period 2008-2016. We also contextualise the basis for global concerns by reviewing the history of the trade and its relation to tigers, poaching and wildlife trafficking. CITES permits issued to export bones escalated from ±314y-1 skeletons from 2008-2011, to ±1312y-1 skeletons from 2013-2015. South Africa was the only legal exporter of bones to Asia until 2013 when Namibia issued permits to export skeletons to Vietnam. While CITES permits to export ±5363 skeletons from Africa to Asia from

  14. Role of the Precambrian Mughese Shear Zone on Cenozoic faulting along the Rukwa-Malawi Rift segment of the East African Rift System

    NASA Astrophysics Data System (ADS)

    Heilman, E.; Kolawole, F.; Mayle, M.; Atekwana, E. A.; Abdelsalam, M. G.

    2017-12-01

    We address the longstanding question of the role of long-lived basement structures in strain accommodation within active rift systems. Studies have highlighted the influence of pre-existing zones of lithospheric weakness in modulating faulting and fault kinematics. Here, we investigate the role of the Neoproterozoic Mughese Shear Zone (MSZ) in Cenozoic rifting along the Rukwa-Malawi rift segment of the East African Rift System (EARS). Detailed analyses of Shuttle Radar Topography Mission (SRTM) DEM and filtered aeromagnetic data allowed us to determine the relationship between rift-related basement-rooted normal faults and the MSZ fabric extending along the southern boundary of the Rukwa-Malawi Rift North Basin. Our results show that the magnetic lineaments defining the MSZ coincide with the collinear Rukwa Rift border fault (Ufipa Fault), a dextral strike-slip fault (Mughese Fault), and the North Basin hinge-zone fault (Mbiri Fault). Fault-scarp and minimum fault-throw analyses reveal that within the Rukwa Rift, the Ufipa Border Fault has been accommodating significant displacement relative to the Lupa Border Fault, which represents the northeastern border fault of the Rukwa Rift. Our analysis also shows that within the North Basin half-graben, the Mbiri Fault has accommodated the most vertical displacement relative to other faults along the half-graben hinge zone. We propose that the Cenozoic reactivation along the MSZ facilitated significant normal slip displacement along the Ufipa Border Fault and the Mbiri Fault, and minor dextral strike-slip between the two faults. We suggest that the fault kinematics along the Rukwa-Malawi Rift is the result of reactivation of the MSZ through regional oblique extension.

  15. Establishing an online continuing and professional development library for nurses and midwives in east, central, and southern Africa

    PubMed Central

    Hosey, Kristen N.; Kalula, Alphonce; Voss, Joachim

    2016-01-01

    Over the previous 4 years, the African Health Profession Regulatory Collaborative for nurses and midwives has supported 12 countries to establish national continuing and professional development frameworks and programs, linking continuing education to nursing and midwifery re-licensure through technical assistance and improvement grants. However, lack of electronic media and rural practice sites, differences in priority content, and varying legal frameworks make providing accessible, certifiable, and up-to-date online continuing education content for the more than 300,000 nurses and midwives in the 17 member countries of the East, Central, and Southern Africa College of Nursing a major challenge. We report here on how the East, Central, and Southern Africa College of Nursing, with technical assistance from an Afya Bora Fellow, developed an online continuing professional development library hosted on their Website using data collected in a survey of nursing and midwifery leaders in the region. PMID:27086190

  16. 35. EAST FRONT OF POWERHOUSE AND CAR BARN: East front ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    35. EAST FRONT OF POWERHOUSE AND CAR BARN: East front of powerhouse and car barn. 'Annex' is right end of building. - San Francisco Cable Railway, Washington & Mason Streets, San Francisco, San Francisco County, CA

  17. 29. SECOND FLOOR EAST SIDE APARTMENT EAST BEDROOM INTERIOR. ALUMINUMFRAME ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    29. SECOND FLOOR EAST SIDE APARTMENT EAST BEDROOM INTERIOR. ALUMINUM-FRAME SLIDING-GLASS WINDOWS ARE REPLACEMENTS. VIEW TO NORTHEAST. - Lee Vining Creek Hydroelectric System, Triplex Cottage, Lee Vining Creek, Lee Vining, Mono County, CA

  18. Prevalence of glaucoma in an urban West African population: the Tema Eye Survey.

    PubMed

    Budenz, Donald L; Barton, Keith; Whiteside-de Vos, Julia; Schiffman, Joyce; Bandi, Jagadeesh; Nolan, Winifred; Herndon, Leon; Kim, Hanna; Hay-Smith, Graham; Tielsch, James M

    2013-05-01

    Multiple studies have found an increased prevalence, younger age at onset, and more severe course of glaucoma in people of African descent, but these findings are based on studies conducted outside Africa. To determine the prevalence of glaucoma in an urban West African population of adults. A population-based, cross-sectional study of adults 40 years and older conducted from September 1, 2006, through December 31, 2008, from 5 communities in Tema, Ghana. Participants from randomly selected clusters underwent a screening examination that consisted of visual acuity, frequency doubling perimetry, applanation tonometry, and optic disc photography. Participants who failed any of these tests were referred for complete examination, including gonioscopy, standard automated perimetry, and stereoscopic optic disc photography. A total of 6806 eligible participants were identified, and 5603 (82.3%) were enrolled in the study. The field examination referred 1869 participants (33.3%) to the clinic examination, and 1538 (82.2%) came for complete examination. A total of 362 participants were identified as having glaucoma of any type and category. Primary open-angle glaucoma was the underlying diagnosis in 342 participants (94.5%). The prevalence of primary open-angle glaucoma was 6.8% overall, increasing from 3.7% among those 40 to 49 years old to 14.6% among those 80 years and older, and was higher in men than in women in all age groups, with an overall male-female prevalence ratio of 1.5. Of the participants with glaucoma, 9 (2.5%) were blind using World Health Organization criteria, and only 12 (3.3%) were aware that they had glaucoma. The prevalence of glaucoma is higher in this urban West African population than in previous studies of people of East or South African and of non-African descent. Strategies to identify affected persons and effectively manage the burden of glaucoma are needed in West Africa.

  19. Fault kinematics and tectonic stress in the seismically active Manyara Dodoma Rift segment in Central Tanzania Implications for the East African Rift

    NASA Astrophysics Data System (ADS)

    Macheyeki, Athanas S.; Delvaux, Damien; De Batist, Marc; Mruma, Abdulkarim

    2008-07-01

    The Eastern Branch of the East African Rift System is well known in Ethiopia (Main Ethiopian Rift) and Kenya (Kenya or Gregory Rift) and is usually considered to fade away southwards in the North Tanzanian Divergence, where it splits into the Eyasi, Manyara and Pangani segments. Further towards the south, rift structures are more weakly expressed and this area has not attracted much attention since the mapping and exploratory works of the 1950s. In November 4, 2002, an earthquake of magnitude Mb = 5.5 struck Dodoma, the capital city of Tanzania. Analysis of modern digital relief, seismological and geological data reveals that ongoing tectonic deformation is presently affecting a broad N-S trending belt, extending southward from the North Tanzanian Divergence to the region of Dodoma, forming the proposed "Manyara-Dodoma Rift segment". North of Arusha-Ngorongoro line, the rift is confined to a narrow belt (Natron graben in Tanzania) and south of it, it broadens into a wide deformation zone which includes both the Eyasi and Manyara grabens. The two-stage rifting model proposed for Kenya and North Tanzania also applies to the Manyara-Dodoma Rift segment. In a first stage, large, well-expressed topographic and volcanogenic structures were initiated in the Natron, Eyasi and Manyara grabens during the Late Miocene to Pliocene. From the Middle Pleistocene onwards, deformations related to the second rifting stage propagated southwards to the Dodoma region. These young structures have still limited morphological expressions compared to the structures formed during the first stage. However, they appear to be tectonically active as shown by the high concentration of moderate earthquakes into earthquake swarms, the distribution of He-bearing thermal springs, the morphological freshness of the fault scarps, and the presence of open surface fractures. Fault kinematic and paleostress analysis of geological fault data in basement rocks along the active fault lines show that recent

  20. 10. BUILDING: SECOND FLOOR (East Section), VIEW SOUTH: EAST, SOUTH ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    10. BUILDING: SECOND FLOOR (East Section), VIEW SOUTH: EAST, SOUTH AND WEST WALLS OF COLD STORAGE, ALSO SHOWING REMNANTS OF COOLING PIPES - Boston Beer Company, 225-249 West Second Street, South Boston, Suffolk County, MA

  1. 3. East side, details of north half of east web; ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    3. East side, details of north half of east web; also details of roadway, railing and overhead bracing; looking northeast - Dodd Ford Bridge, County Road 147 Spanning Blue Earth River, Amboy, Blue Earth County, MN

  2. Gravity study of the Central African Rift system: A model of continental disruption 1. The Ngaoundere and Abu Gabra Rifts

    NASA Astrophysics Data System (ADS)

    Browne, S. E.; Fairhead, J. D.

    1983-05-01

    A regional compilation of published and unpublished gravity data for Central Africa is presented and reveals the presence of a major rift system, called here, the Central African Rift System. It is proposed that the junction area between the Ngaoundere and Abu Gabra rift arms in Western Sudan forms an incipient intraplate, triple-junction with the as yet unfractured, but domally uplifted and volcanically active, Darfur swell. It is only the Darfur swell that shows any similarities to the uplift and rift history of East Africa. The other two rifts arms are considered to be structurally similar to the early stages of passive margin development and thus reflect more closely the initial processes of continental fragmentation than the structures associated with rifting in East Africa.

  3. 18O 16O ratios in cherts associated with the saline lake deposits of East Africa

    USGS Publications Warehouse

    O'Neil, J.R.; Hay, R.L.

    1973-01-01

    The cherts formed from sodium silicate precursors in East African saline, alkaline lakes have ??18O values ranging from 31.1 to 44.1. The ??18O values correlate in general with lake salinities as inferred from geologic evidence, indicating that most chert was formed from its precursor in contact with lake water trapped at the time of deposition. A few of the analyzed cherts probably formed in contact with dilute meteoric water. From the widely varying ??18O values we conclude that precursors were transformed to chert in fluids of widely varying salinity and aNa+/aH+ ratio. ?? 1973.

  4. U-series Chronology of volcanoes in the Central Kenya Peralkaline Province, East African Rift

    NASA Astrophysics Data System (ADS)

    Negron, L. M.; Ma, L.; Deino, A.; Anthony, E. Y.

    2012-12-01

    We are studying the East African Rift System (EARS) in the Central Kenya Peralkaline Province (CKPP), and specifically the young volcanoes Mt. Suswa, Longonot, and Menengai. Ar dates by Al Deino on K-feldspar phenocrysts show a strong correlation between older Ar ages and decreasing 230Th/232Th, which we interpret to reflect the age of eruption. This system has been the subject of recent research done by several UTEP alumni including Antony Wamalwa using potential field and magnetotelluric (MT) data to identify and characterize fractures and hydrothermal fluids. Also research on geochemical modeling done by John White, Vanessa Espejel and Peter Omenda led to the hypothesis of possible disequilibrium in these young, mainly obsidian samples in their post eruptive history. A pilot study of 8 samples, (also including W-2a USGS standard and a blank) establish the correlation that was seen between the ages found by Deino along with the 230/232Th ratios. All 8 samples from Mt. Suswa showed a 234U/238U ratio of (1) which indicates secular equilibrium or unity and that these are very fresh samples with no post-eruptive decay or leaching of U isotopes. The pilot set was comprised of four samples from the ring-trench group (RTG) with ages ranging from 7ka-present, two samples from the post-caldera stage ranging from 31-10ka, one sample from the syn-caldera stage dated at 41ka, and one sample from the pre-caldera stage dated at 112ka. The young RTG had a 230/232Th fractionation ratio of 0.8 ranging to the older pre-caldera stage with a 230/232Th ratio of 0.6. From this current data and research of 14C ages by Nick Rogers, the data from Longonot volcano was also similar to the 230/232Th ratio we found. Rogers' data places Longonot volcano ages to be no more than 20ka with the youngest samples also roughly around 0.8 disequilibrium. These strong correlations between the pilot study done for Mt. Suswa, 40Ar ages by Deino, along with 14C ages from Rogers have led to the

  5. African American and Black Caribbean Feelings of Closeness to Africans

    PubMed Central

    Thornton, Michael C.; Taylor, Robert Joseph; Chatters, Linda M.; Forsythe-Brown, Ivy

    2016-01-01

    African American and Black Caribbean relations dominate research on interactions across black ethnic divides. Using National Survey of American Life data, we explore a different aspect of black interethnic attitudes: how close these groups feel toward Africans. African Americans and Black Caribbeans were largely similar in their feelings of closeness to Africans. For Black Caribbeans, younger and male respondents, those reporting higher levels of financial strain, living in the northeast and persons who immigrated to the United States at least 11 years ago, report feeling especially close to Africans. Being male was the only significant correlate among African Americans. The findings are discussed in relation to how race, ethnicity and national origin shape personal identities within the U.S. and their significance for intergroup perceptions. These broader issues warrant further consideration in light of assertions that race as a defining feature of American life and intergroup relations is obsolete. PMID:28943747

  6. 2. EAST END PLANT 5 POWERHOUSE AND EAST TAILRACE. STONE ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    2. EAST END PLANT 5 POWERHOUSE AND EAST TAILRACE. STONE RETAINING WALLS BEHIND POWERHOUSE DELINEATE FORMER RESIDENTIAL AREA. VIEW TO WEST ACROSS PLANT 6 INTAKE. - Bishop Creek Hydroelectric System, Plant 5, Bishop Creek, Bishop, Inyo County, CA

  7. 12. VIEW EAST, ROUTE 30 EAST FROM ROUTE 130 SOUTH ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    12. VIEW EAST, ROUTE 30 EAST FROM ROUTE 130 SOUTH ISLAND - White Horse Pike Rond Point, Intersection of Crescent Boulevard (U.S. Route 130), White Horse Pike (U.S. Route 30), & Clay Avenue, Collingswood, Camden County, NJ

  8. Equality in Maternal and Newborn Health: Modelling Geographic Disparities in Utilisation of Care in Five East African Countries

    PubMed Central

    Ruktanonchai, Nick W.; Nove, Andrea; Lopes, Sofia; Pezzulo, Carla; Bosco, Claudio; Alegana, Victor A.; Burgert, Clara R.; Ayiko, Rogers; Charles, Andrew SEK; Lambert, Nkurunziza; Msechu, Esther; Kathini, Esther; Matthews, Zoë; Tatem, Andrew J.

    2016-01-01

    Background Geographic accessibility to health facilities represents a fundamental barrier to utilisation of maternal and newborn health (MNH) services, driving historically hidden spatial pockets of localized inequalities. Here, we examine utilisation of MNH care as an emergent property of accessibility, highlighting high-resolution spatial heterogeneity and sub-national inequalities in receiving care before, during, and after delivery throughout five East African countries. Methods We calculated a geographic inaccessibility score to the nearest health facility at 300 x 300 m using a dataset of 9,314 facilities throughout Burundi, Kenya, Rwanda, Tanzania and Uganda. Using Demographic and Health Surveys data, we utilised hierarchical mixed effects logistic regression to examine the odds of: 1) skilled birth attendance, 2) receiving 4+ antenatal care visits at time of delivery, and 3) receiving a postnatal health check-up within 48 hours of delivery. We applied model results onto the accessibility surface to visualise the probabilities of obtaining MNH care at both high-resolution and sub-national levels after adjusting for live births in 2015. Results Across all outcomes, decreasing wealth and education levels were associated with lower odds of obtaining MNH care. Increasing geographic inaccessibility scores were associated with the strongest effect in lowering odds of obtaining care observed across outcomes, with the widest disparities observed among skilled birth attendance. Specifically, for each increase in the inaccessibility score to the nearest health facility, the odds of having skilled birth attendance at delivery was reduced by over 75% (0.24; CI: 0.19–0.3), while the odds of receiving antenatal care decreased by nearly 25% (0.74; CI: 0.61–0.89) and 40% for obtaining postnatal care (0.58; CI: 0.45–0.75). Conclusions Overall, these results suggest decreasing accessibility to the nearest health facility significantly deterred utilisation of all

  9. Classifying Types of Transitions of Past Environmental Change in East African Records

    NASA Astrophysics Data System (ADS)

    Trauth, M. H.

    2016-12-01

    The possible abruptness and internal variability of wet episodes in African climate and their consequences for humans is widely debated in the literature, in particular the last wet-dry transition in the Mid Holocene. We expect similar wet-dry and dry-wet transitions earlier in time, whose research is important for the discussion of the influence of climate change on early humans. Three examples of climate transitions, from wet to dry or from stable to unstable, are presented on three different time scales: (1) the Mid Holocene (MH) wet-dry transition in the Chew Bahir basin (Southern Ethiopian Rift; between 11 ka and 4 ka), (2) the MIS 5-4 transition in the Naivasha basin (Central Kenya Rift; between 160 ka and 50 ka), and (3) the Early Mid Pleistocene Transition (EMPT) in the Olorgesailie basin (Southern Kenya Rift; between 1.25 Ma and 0.4 Ma). A definition of abruptness, based on various statistical measures, used to classify characteristic types of transitions and the possible effect in the biosphere is presented.

  10. 11. OBLIQUE VIEW OF EAST TRUSS AND EAST SIDE OF ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    11. OBLIQUE VIEW OF EAST TRUSS AND EAST SIDE OF SOUTH ABUTMENT, SEEN FROM SOUTH BANK OF WINTER'S RUN. - Mitchell's Mill Bridge, Spanning Winter's Run on Carrs Mill Road, west of Bel Air, Bel Air, Harford County, MD

  11. Complete sequence and diversity of a maize-associated Polerovirus in East Africa.

    PubMed

    Massawe, Deogracious P; Stewart, Lucy R; Kamatenesi, Jovia; Asiimwe, Theodore; Redinbaugh, Margaret G

    2018-06-01

    Since 2011-2012, Maize lethal necrosis (MLN) has emerged in East Africa, causing massive yield loss and propelling research to identify viruses and virus populations present in maize. As expected, next generation sequencing (NGS) has revealed diverse and abundant viruses from the family Potyviridae, primarily sugarcane mosaic virus (SCMV), and maize chlorotic mottle virus (MCMV) (Tombusviridae), which are known to cause MLN by synergistic co-infection. In addition to these expected viruses, we identified a virus in the genus Polerovirus (family Luteoviridae) in 104/172 samples selected for MLN or other potential virus symptoms from Kenya, Uganda, Rwanda, and Tanzania. This polerovirus (MF974579) nucleotide sequence is 97% identical to maize-associated viruses recently reported in China, termed 'maize yellow mosaic virus' (MaYMV) and maize yellow dwarf virus (MaYMV; KU291101, KU291107, MYDV-RMV2; KT992824); and 99% identical to MaYMV (KY684356) infecting sugarcane and itch grass in Nigeria; 83% identical to a barley-associated polerovirus recently identified in Korea (BVG; KT962089); and 79% identical to the U.S. maize-infecting polerovirus maize yellow dwarf virus (MYDV-RMV; KT992824). Nucleotide sequences from ORF0 of 20 individual East African isolates collected from Kenya, Uganda, Rwanda, and Tanzania shared 98% or higher identity, and were detected in 104/172 (60.5%) of samples collected for virus-like symptoms, indicating extensive prevalence but limited diversity of this virus in East Africa. We refer to this virus as "MYDV-like polerovirus" until symptoms of the virus in maize are known.

  12. Genetic and antigenic characterisation of serotype A FMD viruses from East Africa to select new vaccine strains

    PubMed Central

    Bari, Fufa D.; Parida, Satya; Tekleghiorghis, Tesfaalem; Dekker, Aldo; Sangula, Abraham; Reeve, Richard; Haydon, Daniel T.; Paton, David J.; Mahapatra, Mana

    2014-01-01

    Vaccine strain selection for emerging foot-and-mouth disease virus (FMDV) outbreaks in enzootic countries can be addressed through antigenic and genetic characterisation of recently circulating viruses. A total of 56 serotype A FMDVs isolated between 1998 and 2012, from Central, East and North African countries were characterised antigenically by virus neutralisation test using antisera to three existing and four candidate vaccine strains and, genetically by characterising the full capsid sequence data. A Bayesian analysis of the capsid sequence data revealed the viruses to be of either African or Asian topotypes with subdivision of the African topotype viruses into four genotypes (Genotypes I, II, IV and VII). The existing vaccine strains were found to be least cross-reactive (good matches observed for only 5.4–46.4% of the sampled viruses). Three bovine antisera, raised against A-EA-2007, A-EA-1981 and A-EA-1984 viruses, exhibited broad cross-neutralisation, towards more than 85% of the circulating viruses. Of the three vaccines, A-EA-2007 was the best showing more than 90% in-vitro cross-protection, as well as being the most recent amongst the vaccine strains used in this study. It therefore appears antigenically suitable as a vaccine strain to be used in the region in FMD control programmes. PMID:25171846

  13. Ethnic inequalities in dental caries among adults in East London.

    PubMed

    Delgado-Angulo, Elsa K; Bernabé, Eduardo; Marcenes, Wagner

    2016-06-01

    This study explored ethnic inequalities in dental caries among adults and assessed the role of socioeconomic position (SEP) in explaining those inequalities. We analysed data on 2013 adults aged 16-65 years, from the East London Oral Health Inequality (ELOHI) Study, which included a random sample of adults and children living in East London in 2009-10. Participants completed a questionnaire and were clinically examined for dental caries at home. Dental caries was measured using the number of decayed, missing and filled teeth or DMFT index. Ethnic inequalities in dental caries were assessed in negative binomial regression models before and after adjustment for demographic (sex and age groups) and SEP measures (education and socioeconomic classification). White Eastern European and White Other had higher DMFT, whereas all Asian (Pakistani, Indian, Bangladeshi and Other) and all Black (African, Caribbean and Other) ethnic groups had lower DMFT than White British. Similar inequalities were found for the number of filled and missing teeth, but there were no differences in the number of decayed teeth between ethnic groups. This study showed considerable disparities in dental caries between and within the major ethnic categories, which were independent of demographics and SEP. © The Author 2015. Published by Oxford University Press on behalf of Faculty of Public Health. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  14. Advancing the sleep/wake schedule impacts the sleep of African-Americans more than European-Americans

    PubMed Central

    Crowley, Stephanie J.; Fogg, Louis F.; Eastman, Charmane I.

    2017-01-01

    There are differences in sleep duration between Blacks/African-Americans and Whites/European-Americans. Recently, we found differences between these ancestry groups in the circadian system, such as circadian period and the magnitude of phase shifts. Here we document the role of ancestry on sleep and cognitive performance before and after a 9-h advance in the sleep/wake schedule similar to flying east or having a large advance in sleep times due to shiftwork, both of which produce extreme circadian misalignment. Non-Hispanic African and European-Americans (N = 20 and 17 respectively, aged 21–43 years) were scheduled to four baseline days each with 8 h time in bed based on their habitual sleep schedule. This sleep/wake schedule was then advanced 9 h earlier for three days. Sleep was monitored using actigraphy. During the last two baseline/aligned days and the first two advanced/misaligned days, beginning 2 h after waking, cognitive performance was measured every 3 h using the Automated Neuropsychological Assessment Metrics (ANAM) test battery. Mixed model ANOVAs assessed the effects of ancestry (African-American or European-American) and condition (baseline/aligned or advanced/misaligned) on sleep and cognitive performance. There was decreased sleep and impaired performance in both ancestry groups during the advanced/misaligned days compared to the baseline/aligned days. In addition, African-Americans obtained less sleep than European-Americans, especially on the first two days of circadian misalignment. Cognitive performance did not differ between African-Americans and European-Americans during baseline days. During the two advanced/misaligned days, however, African-Americans tended to perform slightly worse compared to European-Americans, particularly at times corresponding to the end of the baseline sleep episodes. Advancing the sleep/wake schedule, creating extreme circadian misalignment, had a greater impact on the sleep of African-Americans than European

  15. Advancing the sleep/wake schedule impacts the sleep of African-Americans more than European-Americans.

    PubMed

    Paech, Gemma M; Crowley, Stephanie J; Fogg, Louis F; Eastman, Charmane I

    2017-01-01

    There are differences in sleep duration between Blacks/African-Americans and Whites/European-Americans. Recently, we found differences between these ancestry groups in the circadian system, such as circadian period and the magnitude of phase shifts. Here we document the role of ancestry on sleep and cognitive performance before and after a 9-h advance in the sleep/wake schedule similar to flying east or having a large advance in sleep times due to shiftwork, both of which produce extreme circadian misalignment. Non-Hispanic African and European-Americans (N = 20 and 17 respectively, aged 21-43 years) were scheduled to four baseline days each with 8 h time in bed based on their habitual sleep schedule. This sleep/wake schedule was then advanced 9 h earlier for three days. Sleep was monitored using actigraphy. During the last two baseline/aligned days and the first two advanced/misaligned days, beginning 2 h after waking, cognitive performance was measured every 3 h using the Automated Neuropsychological Assessment Metrics (ANAM) test battery. Mixed model ANOVAs assessed the effects of ancestry (African-American or European-American) and condition (baseline/aligned or advanced/misaligned) on sleep and cognitive performance. There was decreased sleep and impaired performance in both ancestry groups during the advanced/misaligned days compared to the baseline/aligned days. In addition, African-Americans obtained less sleep than European-Americans, especially on the first two days of circadian misalignment. Cognitive performance did not differ between African-Americans and European-Americans during baseline days. During the two advanced/misaligned days, however, African-Americans tended to perform slightly worse compared to European-Americans, particularly at times corresponding to the end of the baseline sleep episodes. Advancing the sleep/wake schedule, creating extreme circadian misalignment, had a greater impact on the sleep of African-Americans than European

  16. Perspective view looking from the east to the east northeast ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Perspective view looking from the east to the east northeast facade, with Swiss Chalet in background, to replicate the view shown in MD-1109-J-18 - National Park Seminary, Japanese Pagoda, 2805 Linden Lane, Silver Spring, Montgomery County, MD

  17. A 17-My-old whale constrains onset of uplift and climate change in east Africa

    PubMed Central

    Wichura, Henry; Lin, Andrew; Polcyn, Michael J.; Manthi, Fredrick K.; Winkler, Dale A.; Strecker, Manfred R.; Clemens, Matthew

    2015-01-01

    Timing and magnitude of surface uplift are key to understanding the impact of crustal deformation and topographic growth on atmospheric circulation, environmental conditions, and surface processes. Uplift of the East African Plateau is linked to mantle processes, but paleoaltimetry data are too scarce to constrain plateau evolution and subsequent vertical motions associated with rifting. Here, we assess the paleotopographic implications of a beaked whale fossil (Ziphiidae) from the Turkana region of Kenya found 740 km inland from the present-day coastline of the Indian Ocean at an elevation of 620 m. The specimen is ∼17 My old and represents the oldest derived beaked whale known, consistent with molecular estimates of the emergence of modern strap-toothed whales (Mesoplodon). The whale traveled from the Indian Ocean inland along an eastward-directed drainage system controlled by the Cretaceous Anza Graben and was stranded slightly above sea level. Surface uplift from near sea level coincides with paleoclimatic change from a humid environment to highly variable and much drier conditions, which altered biotic communities and drove evolution in east Africa, including that of primates. PMID:25775586

  18. A 17-My-old whale constrains onset of uplift and climate change in east Africa

    NASA Astrophysics Data System (ADS)

    Wichura, Henry; Jacobs, Louis L.; Lin, Andrew; Polcyn, Michael J.; Manthi, Fredrick K.; Winkler, Dale A.; Strecker, Manfred R.; Clemens, Matthew

    2015-03-01

    Timing and magnitude of surface uplift are key to understanding the impact of crustal deformation and topographic growth on atmospheric circulation, environmental conditions, and surface processes. Uplift of the East African Plateau is linked to mantle processes, but paleoaltimetry data are too scarce to constrain plateau evolution and subsequent vertical motions associated with rifting. Here, we assess the paleotopographic implications of a beaked whale fossil (Ziphiidae) from the Turkana region of Kenya found 740 km inland from the present-day coastline of the Indian Ocean at an elevation of 620 m. The specimen is ∼17 My old and represents the oldest derived beaked whale known, consistent with molecular estimates of the emergence of modern strap-toothed whales (Mesoplodon). The whale traveled from the Indian Ocean inland along an eastward-directed drainage system controlled by the Cretaceous Anza Graben and was stranded slightly above sea level. Surface uplift from near sea level coincides with paleoclimatic change from a humid environment to highly variable and much drier conditions, which altered biotic communities and drove evolution in east Africa, including that of primates.

  19. Climate, herbivory, and fire controls on tropical African forest for the last 60ka

    NASA Astrophysics Data System (ADS)

    Ivory, Sarah J.; Russell, James

    2016-09-01

    The Last Glacial Maximum (LGM) in Africa was drier than today and was followed by rapid step-wise climate changes during the last deglacial period. In much of Africa, these changes led to a drastic reduction of lowland forest area during the LGM, followed by recolonization of the lowlands by forest and woodland in concert with regional warming and wetting. However, the history of southeastern African vegetation contrasts with that observed further north. In particular, forest expansion appears to have occurred in southeastern Africa during episodes of high-latitude northern hemisphere cooling. Although vegetation history in Africa is generally assumed to relate purely to climate, previous studies have not addressed potential feedbacks between climate, vegetation, and disturbance regimes (fire, herbivory) that may create tipping points in ecosystems. This climate-vegetation history has profound implications for our understanding of the modern architecture of lowland and highland forests, both thought to be at risk from future climate change. Here we present analyses of fossil pollen, charcoal, and Sporormiella (dung fungus) on a continuous 60 kyr record from central Lake Tanganyika, Southeast Africa, that illustrates the interplay of climate and disturbance regimes in shaping vegetation composition and structure. We observe that extensive forests dominated the region during the last glacial period despite evidence of decreased rainfall. At the end of the LGM, forest opening at ∼17.5 ka followed warming temperatures but preceded rising precipitation, suggesting that temperature-induced water stress and disturbance from fire and herbivory affected initial landscape transformation. Our Sporormiella record indicates that mega-herbivore populations increased at the early Holocene. This higher animal density increased plant species richness and encouraged landscape heterogeneity until the mid-Holocene. At this time, regional drying followed by the onset of the Iron Age

  20. Observed Oceanic and Terrestrial Drivers of North African Climate

    NASA Astrophysics Data System (ADS)

    Yu, Y.; Notaro, M.; Wang, F.; Mao, J.; Shi, X.; Wei, Y.

    2015-12-01

    Hydrologic variability can pose a serious threat to the poverty-stricken regions of North Africa. Yet, the current understanding of oceanic versus terrestrial drivers of North African droughts/pluvials is largely model-based, with vast disagreement among models. In order to identify the observed drivers of North African climate and develop a benchmark for model evaluations, the multivariate Generalized Equilibrium Feedback Assessment (GEFA) is applied to observations, remotely sensed data, and reanalysis products. The identified primary oceanic drivers of North African rainfall variability are the Atlantic, tropical Indian, and tropical Pacific Oceans and Mediterranean Sea. During the summer monsoon, positive tropical eastern Atlantic sea-surface temperature (SST) anomalies are associated with a southward shift of the Inter-Tropical Convergence Zone, enhanced ocean evaporation, and greater precipitable water across coastal West Africa, leading to increased West African monsoon (WAM) rainfall and decreased Sahel rainfall. During the short rains, positive SST anomalies in the western tropical Indian Ocean and negative anomalies in the eastern tropical Indian Ocean support greater easterly oceanic flow, evaporation over the western ocean, and moisture advection to East Africa, thereby enhancing rainfall. The sign, magnitude, and timing of observed vegetation forcing on rainfall vary across North Africa. The positive feedback of leaf area index (LAI) on rainfall is greatest during DJF for the Horn of Africa, while it peaks in autumn and is weakest during the summer monsoon for the Sahel. Across the WAM region, a positive LAI anomaly supports an earlier monsoon onset, increased rainfall during the pre-monsoon, and decreased rainfall during the wet season. Through unique mechanisms, positive LAI anomalies favor enhanced transpiration, precipitable water, and rainfall across the Sahel and Horn of Africa, and increased roughness, ascent, and rainfall across the WAM region