Phylogeography and spatial structure of the lowland tapir (Tapirus terrestris, Perissodactyla: Tapiridae) in South America.

PubMed

Ruiz-García, Manuel; Vásquez, Catalina; Sandoval, Sergio; Kaston, Franz; Luengas-Villamil, Kelly; Shostell, Joseph Mark

2016-07-01

We sequenced the mitochondrial cytochrome b gene of 141 lowland tapirs (Tapirus terrestris) - representing the largest geographical distribution sample of this species studied across of South America to date. We compare our new data regard to two previous works on population structure and molecular systematics of T. terrestris. Our data agree with the Thoisy et al.'s work in (1) the Northern Western Amazon basin was the area with the highest gene diversity levels in T. terrestris, being probably the area of initial diversification; (2) there was no clear association between haplogroups and specific geographical areas; (3) there were clear population decreases during the last glacial maximum for the different haplogroups detected, followed by population expansions during the Holocene; and (4) our temporal splits among different T. terrestris haplogroups coincided with the first molecular clock approach carried out by these authors (fossil calibration). Nevertheless, our study disagreed regard to other aspects of the Thoisy et al.'s claims: (1) meanwhile, they detected four relevant clades in their data, we put forward six different relevant clades; (2) the Amazon River was not a strong barrier for haplotype dispersion in T. terrestris; and (3) we found reciprocal monophyly between T. terrestris and T. pinchaque. Additionally, we sequenced 42 individuals (T. terrestris, T. pinchaque, T. bairdii, and the alleged "new species", T. kabomani) for three concatenated mitochondrial genes (Cyt-b, COI, and COII) agreeing quite well with the view of Voss et al., and against of the claims of Cozzuol et al. Tapirus kabomani should be not considered as a full species with the results obtained throughout the mitochondrial sequences.

Serial immobilization of a Brazilian tapir (Tapirus terrestrus) with oral detomidine and oral carfentanil.

PubMed

Pollock, Christal G; Ramsay, Edward C

2003-12-01

Detomidine (0.17 +/- 0.03 mg/kg, p.o.) followed in 20 min by carfentanil (7.88 +/- 1.85 microg/kg, p.o.) reliably restrained an adult Brazilian tapir (Tapirus terrestrus) eight times for short medical procedures. Detomidine caused head droop, sawhorse stance, ataxia or head pressing (or both). Sternal or lateral recumbency was reached within 10.75 +/- 7.6 min of carfentanil administration. Recoveries after i.v. and s.c. administration of yohimbine and naltrexone were smooth and rapid, with the tapir standing within 2-5 min.

Successful treatment of oral squamous cell carcinoma with intralesional fluorouracil in a Malayan tapir (Tapirus indicus).

PubMed

Miller, C L; Templeton, R S; Karpinski, L

2000-06-01

An oral mass was observed in a Malayan tapir (Tapirus indicus). Squamous cell carcinoma was diagnosed by histologic examination of a biopsy specimen. A series of intralesional injections using fluorouracil resulted in complete regression of the neoplasm with no recognized adverse effects.

[Parasites of the Central American tapir Tapirus bairdii (Perissodactyla: Tapiridae) in Chiapas, Mexico].

PubMed

Cruz Aldán, Epigmenio; Lira Torres, Iván; Güiris Andrade, Dario Marcelino; Osorio Sarabia, David; Quintero M, Ma Teresa

2006-06-01

We analyzed 19 samples of Baird's tapir feces from La Sepultura Biosphere Reserve, collected between March and July 1999. We also took samples directly from a male tapir captured at the Montes Azules Biosphere Reserve. Both reserves are in Chiapas, Mexico. We used five techniques: flotation, MacMaster, micrometric, Ritchie's sedimentation and Ferreira's quantitative. In addition, we collected ectoparasites from animals captured in both reserves and from a captive couple from Tuxtla Gutierrez, Chiapas. These nematodes and protozoans were found: Agriostomun sp., Lacandoria sp., Neomurshidia sp., Trichostrongylus sp., Strongylus sp., Brachylumus sp, and an unidentified species of ancilostomaide. We also found Eimeria sp. and Balantidium coli, as well as the mites Dermacentor halli, Dermacentor latus, Amblyomma cajannense, Amblyomma coelebs, Amblyomma ovale, Anocentor nitens and Ixodes bicornis.

The complete mitochondrial genome of the Asian tapirs (Tapirus indicus): the only extant Tapiridae species in the old world.

PubMed

Muangkram, Yuttamol; Wajjwalku, Worawidh; Kaolim, Nongnid; Buddhakosai, Waradee; Kamolnorranath, Sumate; Siriaroonrat, Boripat; Tipkantha, Wanlaya; Dongsaard, Khwanruean; Maikaew, Umaporn; Sanannu, Saowaphang

2016-01-01

Asian tapir (Tapirus indicus) is categorized as Endangered on the 2008 IUCN red list. The first full-length mitochondrial DNA (mtDNA) sequence of Asian tapir is 16,717 bp in length. Base composition shows 34.6% A, 27.2% T, 25.8% C and 12.3% G. Highest polymorphic site is on the control region as typical for many species.

Tapir (Tapirus) enteroliths

USGS Publications Warehouse

Murphy, M.R.; Masters, J.M.; Moore, D.M.; Glass, H.D.; Hughes, R.E.; Crissey, S.D.

1997-01-01

Enterolith fragments from two tapir species and horses were subjected to x-ray diffraction analysis. Tapir enteroliths were formed as layers of mineral deposited around a foreign nidus. The structure was similar to that of equine enteroliths except that tapir enteroliths lacked a central region of radially symmetrical coarse crystals. The enteroliths from tapirs were composed primarily of vivianite [Fe3(PO4)2 ?? 8H2O] and newberyite [MgH(PO4) ?? 3H2O], instead of the struvite [Mg(NH4)(PO4) ?? 6H2O] of enteroliths from horses. The reason for this difference is not known. Based on the chemistry of these mineral precipitates and information from other species, it was concluded that dietary manipulation to maximize carbohydrate fermentation and minimize protein fermentation in the large intestine may help prevent enterolithiasis in tapirs. ?? 1997 Wiley-Liss, Inc.

Diet of lowland tapir (Tapirus terrestris) in El Rey National Park, Salta, Argentina.

PubMed

Chalukian, Silvia C; de Bustos, M Soledad; Lizárraga, R Leonidas

2013-03-01

Lowland tapir (Tapirus terrestris) is the largest herbivore in the Neotropics and, in Argentina, it inhabits a variety of habitats from 100 to 2100 m asl. Lowland tapirs importantly influence their habitat structure because they are selective browsers, seed predators and long-distance seed dispersers. However, increased knowledge of tapir ecology is necessary to support the conservation and management of the species in natural and human-modified environments. Between Jun 2002 and Dec 2008 we assessed the tapir's diet in El Rey National Park, Salta, northwestern Argentina. We collected fresh feces and recorded browsing signs, and we recorded direct observations of tapirs while they were feeding. We analyzed 88 feces samples that had been dried and subsequently weighed. Feces were dominated by fibers and leaves (84.09%), while fruit parts represented a small proportion of the weight (15.91%). During the dry months, a greater percentage of seeds were found in the feces, mainly due to the availability of 3 species of Fabaceae fruits. We recorded a total of 57 plant species from 26 families. Tapirs are adapted to extreme habitats, switching their diet from frugivory to herbivory when fruits are scarce. Considering this, forest remnants and even secondary growth fields should be protected from deforestation. © 2012 Wiley Publishing Asia Pty Ltd, ISZS and IOZ/CAS.

Occurrence of Toxoplasma gondii antibodies in Lowland Tapirs (Tapirus terrestris) maintained ex-situ in Brazil and Paraguay

USDA-ARS?s Scientific Manuscript database

Exposure to Toxoplasma gondii, by the presence of antibodies to the parasite, was documented in 47 Brazilian tapirs (Tapirus terrestris) maintained ex-situ in 10 Brazilian and in one Paraguayan Institution. One animal had samples collected on two occasions (November 2010 and October 2011), and 19 (4...

Neospora caninum abortion in a Malayan tapir (Tapirus indicus).

PubMed

Peters, M; Osmann, C; Wohlsein, P; Schares, G

2017-05-30

A captive 17-year old female Malayan tapir (Tapirus indicus) aborted a fetus with a crown rump length of 19cm in early pregnancy. The fetus showed an early state of mummification. Histologically, a multifocal mononuclear encephalitis, myocarditis and periportal hepatitis was present indicating a possible protozoal cause of abortion. Although immunohistologically, Neospora (N.) caninum antigen could not be demonstrated, N. caninum DNA was detected by Polymerase Chain Reaction (PCR) in brain, heart, liver and lung of the fetus. N. caninum DNA was extracted from the aborted fetus and the microsatellite marker MS10 was amplified by PCR and sequenced. The obtained MS10 microsatellite pattern has not been described in Germany yet. Nevertheless, the MS10 pattern was very similar to those reported for N. caninum isolated from dogs and cattle in Germany. Because of the histological pattern and extent of the lesions, neosporosis was suspected as the cause of fetal death and abortion. This case report describes for the first time transplacental transmission of N. caninum and abortion due to neosporosis in a tapir. Copyright © 2017 Elsevier B.V. All rights reserved.

Baird's tapir density in high elevation forests of the Talamanca region of Costa Rica.

PubMed

González-Maya, José F; Schipper, Jan; Polidoro, Beth; Hoepker, Annelie; Zárrate-Charry, Diego; Belant, Jerrold L

2012-12-01

Baird's tapir (Tapirus bairdii) is currently endangered throughout its neotropical range with an expected population decline >50% in the next 30 years. We present the first density estimation of Baird's tapir for the Talamanca mountains of Costa Rica, and one of the first for the country. Ten stations with paired cameras were established in Valle del Silencio within Parque Internacional La Amistad (PILA). Seventy-seven tapir pictures of 15 individuals comprising 25 capture-recapture events were analyzed using mark-recapture techniques. The 100% minimum convex polygon of the sampled area was 5.7 km(2) and the effective sampled area using half mean maximum distances moved by tapirs was 7.16 km(2) . We estimated a tapir density of 2.93 individuals/km(2) which represents the highest density reported for this species. Intermountain valleys can represent unique and important habitats for large mammal species. However, the extent of isolation of this population, potentially constrained by steep slopes of the cordillera, remains unknown. Further genetic and movement studies are required to understand meta-population dynamics and connectivity between lowland and highland areas for Baird's tapir conservation in Costa Rica. © 2012 Wiley Publishing Asia Pty Ltd, ISZS and IOZ/CAS.

Population history, phylogeography, and conservation genetics of the last Neotropical mega-herbivore, the lowland tapir (Tapirus terrestris)

PubMed Central

2010-01-01

Background Understanding the forces that shaped Neotropical diversity is central issue to explain tropical biodiversity and inform conservation action; yet few studies have examined large, widespread species. Lowland tapir (Tapirus terrrestris, Perissodactyla, Tapiridae) is the largest Neotropical herbivore whose ancestors arrived in South America during the Great American Biotic Interchange. A Pleistocene diversification is inferred for the genus Tapirus from the fossil record, but only two species survived the Pleistocene megafauna extinction. Here, we investigate the history of lowland tapir as revealed by variation at the mitochondrial gene Cytochrome b, compare it to the fossil data, and explore mechanisms that could have shaped the observed structure of current populations. Results Separate methodological approaches found mutually exclusive divergence times for lowland tapir, either in the late or in the early Pleistocene, although a late Pleistocene divergence is more in tune with the fossil record. Bayesian analysis favored mountain tapir (T. pinchaque) paraphyly in relation to lowland tapir over reciprocal monophyly, corroborating the inferences from the fossil data these species are sister taxa. A coalescent-based analysis rejected a null hypothesis of allopatric divergence, suggesting a complex history. Based on the geographic distribution of haplotypes we propose (i) a central role for western Amazonia in tapir diversification, with a key role of the ecological gradient along the transition between Andean subcloud forests and Amazon lowland forest, and (ii) that the Amazon river acted as an barrier to gene flow. Finally, the branching patterns and estimates based on nucleotide diversity indicate a population expansion after the Last Glacial Maximum. Conclusions This study is the first examining lowland tapir phylogeography. Climatic events at the end of the Pleistocene, parapatric speciation, divergence along the Andean foothill, and role of the Amazon

Population history, phylogeography, and conservation genetics of the last Neotropical mega-herbivore, the lowland tapir (Tapirus terrestris).

PubMed

de Thoisy, Benoit; da Silva, Anders Gonçalves; Ruiz-García, Manuel; Tapia, Andrés; Ramirez, Oswaldo; Arana, Margarita; Quse, Viviana; Paz-y-Miño, César; Tobler, Mathias; Pedraza, Carlos; Lavergne, Anne

2010-09-14

Understanding the forces that shaped Neotropical diversity is central issue to explain tropical biodiversity and inform conservation action; yet few studies have examined large, widespread species. Lowland tapir (Tapirus terrrestris, Perissodactyla, Tapiridae) is the largest Neotropical herbivore whose ancestors arrived in South America during the Great American Biotic Interchange. A Pleistocene diversification is inferred for the genus Tapirus from the fossil record, but only two species survived the Pleistocene megafauna extinction. Here, we investigate the history of lowland tapir as revealed by variation at the mitochondrial gene Cytochrome b, compare it to the fossil data, and explore mechanisms that could have shaped the observed structure of current populations. Separate methodological approaches found mutually exclusive divergence times for lowland tapir, either in the late or in the early Pleistocene, although a late Pleistocene divergence is more in tune with the fossil record. Bayesian analysis favored mountain tapir (T. pinchaque) paraphyly in relation to lowland tapir over reciprocal monophyly, corroborating the inferences from the fossil data these species are sister taxa. A coalescent-based analysis rejected a null hypothesis of allopatric divergence, suggesting a complex history. Based on the geographic distribution of haplotypes we propose (i) a central role for western Amazonia in tapir diversification, with a key role of the ecological gradient along the transition between Andean subcloud forests and Amazon lowland forest, and (ii) that the Amazon river acted as an barrier to gene flow. Finally, the branching patterns and estimates based on nucleotide diversity indicate a population expansion after the Last Glacial Maximum. This study is the first examining lowland tapir phylogeography. Climatic events at the end of the Pleistocene, parapatric speciation, divergence along the Andean foothill, and role of the Amazon river, have similarly shaped

Natural Infection of the South American Tapir ( Tapirus terrestris ) by Theileria equi.

PubMed

Da Silveira, Alexandre Welzel; De Oliveira, Gustavo Gomes; Menezes Santos, Leandro; da Silva Azuaga, Lucas Bezerra; Macedo Coutinho, Claudia Regina; Echeverria, Jessica Teles; Antunes, Tamires Ramborger; do Nascimento Ramos, Carlos Alberto; Izabel de Souza, Alda

2017-04-01

Theileria equi is a tick-borne piroplasm considered endemic in equines in Brazil. The cohabitation of domestic and wild animals in areas of extensive cattle breeding favors the close contact between different species and the sharing of vectors and, consequently, pathogens. We report the natural infection of a young South American tapir ( Tapirus terrestris ) by T. equi in Mato Grosso do Sul, Brazil. Although it was not possible to associate the clinical and hematologic status of the animal with the infection by the protozoan parasite, our report represents an alert on the sharing of pathogens between domestic and wild animals.

Rapid ongoing decline of Baird's tapir in Cusuco National Park, Honduras.

PubMed

McCANN, Niall P; Wheeler, Phil M; Coles, Tim; Bruford, Michael W

2012-12-01

During the International Tapir Symposium 16-21 Oct 2011, the conservation of Baird's tapir (Tapirus bairdii) in Honduras received a boost with the signing of a memorandum of understanding between the Minister Director of the Honduran Institute of Conservation and Forestry (ICF) and the Tapir Specialist Group (TSG). Despite this agreement, accelerating levels of hunting and habitat loss continue to pose a threat to Baird's tapir in Honduras. An ongoing study in Cusuco National Park in northwestern Honduras has been monitoring changes in population dynamics of Baird's tapir since 2006 through the collection of occupancy data. The study has identified an increase in hunting pressure, coinciding with a drastic decline in the encounter rate with Baird's tapir spoor. Here, we examine the significance of a range of demographic variables on Baird's tapir occupancy in Cusuco National Park using the software PRESENCE, and simulate the effects of different management strategies on the future dynamics of the population using the stochastic simulation software VORTEX. The predictions of the theoretical population models are compared to observed changes in occupancy levels. We found that non-intervention resulted in the local extinction of Baird's tapir within a very short time frame, but that various intervention models enabled the population to recover to near carrying capacity. Occupancy and extinction probability were shown to respond markedly to the increase in hunting pressure; and occupancy models supported the future population predictions generated by VORTEX. Our study suggests that immediate intervention is required to reduce hunting pressure to near historical levels to prevent the imminent local extinction of the species. © 2012 Wiley Publishing Asia Pty Ltd, ISZS and IOZ/CAS.

A case study of Malayan tapir (Tapirus indicus) husbandry practice across 10 zoological collections.

PubMed

Rose, Paul E; Roffe, Sarah M

2013-01-01

The Malayan, or Asian, tapir (Tapirus indicus) has a diminishing wild population and is becoming more common in captivity as zoos attempt to manage sustainable ex situ populations. Tapirs can be relatively easy to maintain and breed, but captive animals appear to suffer from reduced activity budgets, obesity, and poor public image. A questionnaire-based survey was designed and sent specifically to 10 collections around the world that exhibit Malayan tapirs, with the aim of assessing husbandry regimes to determine prevalence of standardized practices as well as highlighting any key differences, and to showcase good practice, thus providing information beneficial to those maintaining this species in their zoo. Twenty-five animals were included in the survey from collections across four continents. The research's major conclusions show differing dietary make-up, with a lack of forage provision, contrasting with a diverse array of enrichment protocols used. Significant differences were noted between zoos for total amount of food offered (P = 0.000) as well as ratios of forage to concentrate pellet offered (P = 0.004). Comparing food offered to male and female tapirs with published requirements for an "average" of either gender shows not all zoos providing the amount suggested in husbandry guidelines. Intelligently designed and original enrichment was provided to all animals but differences between zoos were noted in the application and "usefulness" of enrichment for individual tapir. Overall, animals are benefiting from enrichment but welfare could be further improved via consistent feeding of ad libitum forage and regular use of browse as a constituent part of daily rations. © 2012 Wiley Periodicals, Inc.

Estimating the population density of the Asian tapir (Tapirus indicus) in a selectively logged forest in Peninsular Malaysia.

PubMed

Rayan, D Mark; Mohamad, Shariff Wan; Dorward, Leejiah; Aziz, Sheema Abdul; Clements, Gopalasamy Reuben; Christopher, Wong Chai Thiam; Traeholt, Carl; Magintan, David

2012-12-01

The endangered Asian tapir (Tapirus indicus) is threatened by large-scale habitat loss, forest fragmentation and increased hunting pressure. Conservation planning for this species, however, is hampered by a severe paucity of information on its ecology and population status. We present the first Asian tapir population density estimate from a camera trapping study targeting tigers in a selectively logged forest within Peninsular Malaysia using a spatially explicit capture-recapture maximum likelihood based framework. With a trap effort of 2496 nights, 17 individuals were identified corresponding to a density (standard error) estimate of 9.49 (2.55) adult tapirs/100 km(2) . Although our results include several caveats, we believe that our density estimate still serves as an important baseline to facilitate the monitoring of tapir population trends in Peninsular Malaysia. Our study also highlights the potential of extracting vital ecological and population information for other cryptic individually identifiable animals from tiger-centric studies, especially with the use of a spatially explicit capture-recapture maximum likelihood based framework. © 2012 Wiley Publishing Asia Pty Ltd, ISZS and IOZ/CAS.

Morphological and molecular characterization and phylogenetic relationships of a new species of trypanosome in Tapirus terrestris (lowland tapir), Trypanosoma terrestris sp. nov., from Atlantic Rainforest of southeastern Brazi.

PubMed

Acosta, Igor da Cunha Lima; da Costa, Andrea Pereira; Nunes, Pablo Henrique; Gondim, Maria Fernanda Naegeli; Gatti, Andressa; Rossi, João Luiz; Gennari, Solange Maria; Marcili, Arlei

2013-12-11

The Lowland tapir (Tapirus terrestris) is the largest Brazilian mammal and despite being distributed in various Brazilian biomes, it is seriously endangered in the Atlantic Rainforest. These hosts were never evaluated for the presence of Trypanosoma parasites. The Lowland tapirs were captured in the Brazilian southeastern Atlantic Rainforest, Espírito Santo state. Trypanosomes were isolated by hemoculture, and the molecular phylogeny based on small subunit rDNA (SSU rDNA) and glycosomal-3-phosphate dehydrogenase (gGAPDH) gene sequences and the ultrastructural features seen via light microscopy and scanning and transmission electron microscopy are described. Phylogenetic trees using combined SSU rDNA and gGAPDH data sets clustered the trypanosomes of Lowland tapirs, which were highly divergent from other trypanosome species. The phylogenetic position and morphological discontinuities, mainly in epimastigote culture forms, made it possible to classify the trypanosomes from Lowland tapirs as a separate species. The isolated trypanosomes from Tapirus terrestris are a new species, Trypanosoma terrestris sp. n., and were positioned in a new Trypanosoma clade, named T. terrestris clade.

Morphological and molecular characterization and phylogenetic relationships of a new species of trypanosome in Tapirus terrestris (lowland tapir), Trypanosoma terrestris sp. nov., from Atlantic Rainforest of southeastern Brazi

PubMed Central

2013-01-01

Background The Lowland tapir (Tapirus terrestris) is the largest Brazilian mammal and despite being distributed in various Brazilian biomes, it is seriously endangered in the Atlantic Rainforest. These hosts were never evaluated for the presence of Trypanosoma parasites. Methods The Lowland tapirs were captured in the Brazilian southeastern Atlantic Rainforest, Espírito Santo state. Trypanosomes were isolated by hemoculture, and the molecular phylogeny based on small subunit rDNA (SSU rDNA) and glycosomal-3-phosphate dehydrogenase (gGAPDH) gene sequences and the ultrastructural features seen via light microscopy and scanning and transmission electron microscopy are described. Results Phylogenetic trees using combined SSU rDNA and gGAPDH data sets clustered the trypanosomes of Lowland tapirs, which were highly divergent from other trypanosome species. The phylogenetic position and morphological discontinuities, mainly in epimastigote culture forms, made it possible to classify the trypanosomes from Lowland tapirs as a separate species. Conclusions The isolated trypanosomes from Tapirus terrestris are a new species, Trypanosoma terrestris sp. n., and were positioned in a new Trypanosoma clade, named T. terrestris clade. PMID:24330660

Gross anatomy and ultrasonographic images of the reproductive system of the Malayan tapir (Tapirus indicus).

PubMed

Lilia, K; Rosnina, Y; Abd Wahid, H; Zahari, Z Z; Abraham, M

2010-12-01

The Malayan tapir (Tapirus indicus) is the largest among the four tapir species and is listed as an endangered species. Ultrasound examination and description of the external anatomy of the female reproductive system of three adult females were performed, whereas the internal anatomy was investigated in necropsied samples of four adult females and one subadult female. Descriptions of the male external genitalia were conducted on one adult male. Gross examination revealed the presence of a bicornuate uterus. The uterine cervix is firm and muscular with projections towards its lumen, which is also evident on ultrasonography. The elongated and relatively small ovaries, which have a smooth surface, could not be imaged on ultrasonography, due to their anatomical position. The testes are located inside a slightly pendulous scrotum that is sparsely covered with soft, short hairs. The penis has one dorsal and two lateral penile projections just proximal to the glans penis. © 2010 Blackwell Verlag GmbH.

Comparative sensitivity to environmental variation and human disturbance of Asian tapirs (Tapirus indicus) and other wild ungulates in Thailand.

PubMed

Lynam, Antony J; Tantipisanuh, Naruemon; Chutipong, Wanlop; Ngoprasert, Dusit; Baker, Megan C; Cutter, Passanan; Gale, George; Kitamura, Shumpei; Steinmetz, Robert; Sukmasuang, Ronglarp; Thunhikorn, Somying

2012-12-01

Southeast Asia's tropical forests suffer the highest rates of deforestation and disturbance of any on Earth, with poorly understood impacts on native fauna. Asian tapirs (Tapirus indicus) are among the least studied of the large mammals in these forests. Using records from 9 camera trap surveys in 7 of the largest (>1000 km(2) ) protected area complexes, we assessed the influence of environmental variation and human-induced disturbance on tapir occurrence. Tapirs were detected at 13% of locations sampled, significantly associated with evergreen forest (P < 0.001). A multiple logistic regression model predicted tapir presence 87% of the time. According to this model, tapir occurrence was positively influenced by annual rainfall and proximity to the forest edge. However, tapirs may not avoid edges but instead prefer wetter evergreen forest, a habitat type that tended to occur further from the forest edge at higher elevations in our particular study sites (P < 0.001). By comparison, 4 other wild ungulate species that share habitats with tapirs showed a range of differing responses. Tapirs are expected to be less sensitive to disturbance because they are not targets for hunting and trade, and are almost entirely active at night, so avoid peak traffic periods in parks. Tapir populations in Thailand may be more stable than in other parts of their global range because rates of forest loss have decreased >40% over the past 20 years. We recommend surveys to fill gaps in the understanding of the status in lesser-known protected areas, research to better understand the fine-scale environmental influences on behavior and habitats of tapirs, and other forest ungulates, and continued legal status for tapirs in the highest category of protection. © 2012 Wiley Publishing Asia Pty Ltd, ISZS and IOZ/CAS.

Iron deficiency anemia in captive āalayan tapir calves (Tapirus indicus).

PubMed

Helmick, Kelly E; Milne, Victoria E

2012-12-01

Iron deficiency anemia (IDA) was diagnosed in two captive female neonatal Malayan tapirs (Tapirus indicus) at separate institutions. Both calves had unremarkable exams and normal blood parameters within the first 3 days of life. Microcytic hypochromic anemia (hematocrit, HCT= 20%; mean corpuscular volume, MCV = 32.8 fl; mean corpuscular hemoglobin, MCH = 10.5 pg) was diagnosed at day 66 of age in calf EPZ-1. Iron dextran (10 mg/kg i.m.) was administered at day 71. A normal HCT (33%) with microcytosis and hypochromasia (MCV = 33.0 fl; MCH = 11.7 pg) was identified at day 80. No further concerns were noted through 610 days of age. Microcytic hypochromic anemia (HCT = 16%; MCV = 38.4 fl; MCH = 13.3 pg; mean corpuscular hemoglobin concentration, MCHC= 34.6 g/dl) with thrombocytosis (platelets= 1018 10(3)/UL) and poikilocytosis was diagnosed at day 38 of age in calf WPZ-1 by samples obtained through operant conditioning. Iron dextran (10 mg/kg i.m.) was administered at day 40 and day 68. Improving hematocrit (32%) and low serum iron (45 micorg/dl) was identified at day 88; total iron binding capacity (TIBC; 438 microg/dl) and percentage saturation (10%) were also measured. No further concerns were noted through day 529 of age. Retrospective evaluation identified presumptive IDA in two male siblings of calf WPZ-1. One calf died at day 40 (iron = 40 microg/dl; TIBC = 482 microg/dl; percentage saturation = 4%) and another at day 72 (HCT = 11%; iron = 26 microg/dl; TIBC = 470 microg/dl; percentage saturation = 6%). Death in both calves was attributed to disseminated intravascular coagulation and bacterial septicemia. IDA can develop in Malayan tapirs between day 38 and day 72 of age and may be a significant precursor to bacterial septicemia and death in neonatal Malayan tapirs.

Escherichia coli-producing extended-spectrum beta-lactamase CTX-M-15 in a captive South American tapir (Tapirus terrestris).

PubMed

Klimes, Jiri; Machalkova, Marketa; Dolejska, Monika; Cizek, Alois; Janoszowska, Dagmar; Alexa, Pavel; Albrechtova, Katerina; Vojtech, Jiri; Literak, Ivan

2013-03-01

Only a few reports exist on the occurrence of resistant bacteria in zoo animals. Therefore, an isolation of multiresistant Escherichia coli from the lungs of a captive South American tapir (Tapirus terrestris) lead to its characterization and further investigation of samples from animals inhabiting the same paddock and from the shared environment. The tapir suffered from an intermandibular abscess and pneumonia and was euthanatized after unsuccessful therapy, including administration of antibiotics. The authors performed selective isolation of extended-spectrum beta-lactamase (ESBL)-positive E. coli strains and identification of resistance genes using polymerase chain reaction. Seven multiresistant, ESBL-producing E. coli isolates were obtained, all belonging to the B2 phylogenetic group and showing identical profile on pulsed-field gel electrophoresis. These isolates carried several resistance genes, including the gene bla(CTX-M-15). This case demonstrates the transmission of related epidemiologically important E. coli isolates whose potential transmission to other animals and zoo staff can be assumed.

Health assessment of wild lowland tapir (Tapirus terrestris) populations in the Atlantic Forest and Pantanal biomes, Brazil (1996-2012).

PubMed

Medici, Emília Patrícia; Mangini, Paulo Rogerio; Fernandes-Santos, Renata Carolina

2014-10-01

Abstract The lowland tapir (Tapirus terrestris) is found in South America and is listed as Vulnerable to Extinction by the International Union for Conservation of Nature, Red List of Threatened Species. Health issues, particularly infectious diseases, are potential threats for the species. Health information from 65 wild tapirs from two Brazilian biomes, Atlantic Forest (AF) and Pantanal (PA), were collected during a long-term study (1996-2012). The study included physic, hematologic and biochemical evaluations, microbiologic cultures, urinalysis, and serologic analyses for antibodies against 13 infectious agents (viral and bacterial). The AF and PA tapirs were significantly different for several hematologic and biochemical parameters. Ten bacteria taxa were identified in the AF and 26 in the PA. Antibodies against five viruses were detected: Bluetongue virus, eastern equine encephalitis virus, western equine encephalitis virus, infectious bovine rhinotracheitis virus, and porcine parvovirus. A high prevalence of exposure to Leptospira interrogans (10 serovars: Autumnalis, Bratislava, Canicola, Copenhageni, Grippotyphosa, Hardjo, Hebdomadis, Icterohaemorrhagiae, Pomona, and Pyrogenes) was detected in both the AF and PA sites. A greater diversity of serovars and higher antibody titers were found in the PA. Statistically significant differences between sites were found for L. interrogans, equine encephalitis virus, and porcine parvovirus. Based on physical evaluations, both AF and PA populations were healthy. The differences in the overall health profile of the AF and PA tapir populations appear to be associated with environmental factors and infectious diseases ecology. The extensive datasets on hematology, biochemistry, urinalysis, and microbiology results from this paper can be used as reference values for wild tapirs.

Kinship and Social Behavior of Lowland Tapirs (Tapirus terrestris) in a Central Amazon Landscape

PubMed Central

Pinho, Gabriela M.; Gonçalves da Silva, Anders; Hrbek, Tomas; Venticinque, Eduardo M.; Farias, Izeni P.

2014-01-01

We tested the hypothesis that tapirs tolerate individuals from adjacent and overlapping home ranges if they are related. We obtained genetic data from fecal samples collected in the Balbina reservoir landscape, central Amazon. Samples were genotyped at 14 microsatellite loci, of which five produced high quality informative genotypes. Based on an analysis of 32 individuals, we inferred a single panmictic population with high levels of heterozygosity. Kinship analysis identified 10 pairs of full siblings or parent-offspring, 10 pairs of half siblings and 25 unrelated pairs. In 10 cases, the related individuals were situated on opposite margins of the reservoir, suggesting that tapirs are capable of crossing the main river, even after damming. The polygamous model was the most likely mating system for Tapirus terrestris. Moran's I index of allele sharing between pairs of individuals geographically close (<3 km) was similar to that observed between individual pairs at larger distances (>3 km). Confirming this result, the related individuals were not geographically closer than unrelated ones (W = 188.5; p = 0.339). Thus, we found no evidence of a preference for being close to relatives and observed a tendency for dispersal. The small importance of relatedness in determining spatial distribution of individuals is unusual in mammals, but not unheard of. Finally, non-invasive sampling allowed efficient access to the genetic data, despite the warm and humid climate of the Amazon, which accelerates DNA degradation. PMID:24671057

Ultrasonographic measurement of fetal growth parameters over three successive pregnancies in a captive Malayan tapir (Tapirus indicus).

PubMed

Hoyer, M J; van Engeldorp Gastelaars, H M D

2014-01-01

This study was conducted to establish representative curves that allow evaluation of fetal growth and estimation of gestational age from measurement of fetal structures by ultrasound in Malayan tapirs (Tapirus indicus). Three pregnancies (i.e. 3 fetuses) were examined in one female Malayan tapir. Transabdominal ultrasonographic examination was performed without anesthesia from 79 ± 8 days to 281 ± 48 days (mean ± S.D.) post mating. To assess fetal growth attempts were made to measure biparietal diameter (BPD), head length (HL), thorax diameter A (TDA), thorax height A (THA), thorax diameter B (TDB), thorax height B (THB), abdomen diameter (AD), abdomen height (AH), humerus length (HUL) and Crown rump length (CRL). The value of each parameter as an estimator of gestational age was assessed by ease of observation and the length of time the parameter was measurable throughout gestation. The most precise predictors for gestational age in this study were BPD and CRL (weeks 10-20 of gestation), as well as AD and AH (weeks 14-43 of gestation). The parameters TDB, THB and HUL (weeks 15-41 of gestation) gave almost as good predictions. Fetal viability was assessed by identifying a fetal heartbeat and movement. All pregnancies resulted in normal deliveries and healthy offspring. The ultrasound examination was well tolerated by the female. The gestation lengths (399 ± 3 days) were within reported ranges. The serial transabdominal ultrasound, without the need for anesthesia, was an effective method to evaluate fetal growth, development and well being in a Malayan tapir. © 2014 Wiley Periodicals, Inc.

Multidirectional cross-species painting illuminates the history of karyotypic evolution in Perissodactyla.

PubMed

Trifonov, Vladimir A; Stanyon, Roscoe; Nesterenko, Anastasia I; Fu, Beiyuan; Perelman, Polina L; O'Brien, Patricia C M; Stone, Gary; Rubtsova, Nadezhda V; Houck, Marlys L; Robinson, Terence J; Ferguson-Smith, Malcolm A; Dobigny, Gauthier; Graphodatsky, Alexander S; Yang, Fengtang

2008-01-01

The order Perissodactyla, the group of odd-toed ungulates, includes three extant families: Equidae, Tapiridae, and Rhinocerotidae. The extremely rapid karyotypic diversification in perissodactyls has so far prevented the establishment of genome-wide homology maps between these three families by traditional cytogenetic approaches. Here we report the first genome-wide comparative chromosome maps of African rhinoceroses, four tapir species, four equine species, and humans. These maps were established by multidirectional chromosome painting, with paint probes derived from flow-sorted chromosomes of Equus grevyi, Tapirus indicus, and Ceratotherium simum as well as painting probes from horse and human. The Malayan tapir (Tapirus indicus), Baird's tapir (T. bairdii), mountain tapir (T. pinchaque), lowland tapir (T. terrestris), and onager (E. hemionus onager), were studied by cross-species chromosome painting for the first time. Our results, when integrated with previously published comparative chromosome maps of the other perissodactyl species, have enabled the reconstruction of perissodactyl, ceratomorph, and equid ancestral karyotypes, and the identification of the defining evolutionary chromosomal rearrangements along each lineage. Our results allow a more reliable estimate of the mode and tempo of evolutionary chromosomal rearrangements, revealing a striking switch between the slowly evolving ceratomorphs and extremely rapidly evolving equids.

First description of the male and redescription of the female of Ixodes tapirus Kohls, 1956 (Acari: Ixodidae), a parasite of tapirs (Perissodactyla: Tapiridae) from the mountains of Colombia, Costa Rica and Panama.

PubMed

Apanaskevich, Dmitry A; Domínguez, Lillian G; Torres, Sugeys S; Bernal, Juan A; Montenegro, Victor M; Bermúdez, Sergio E

2017-03-01

The male of Ixodes tapirus Kohls, 1956 (Acari: Ixodidae) is described for the first time and the female is redescribed in greater detail. Adults of I. tapirus are similar to those of Ixodes guatemalensis Kohls, 1956, Ixodes lasallei Méndez & Ortiz, 1958, Ixodes montoyanus Cooley, 1944 and Ixodes venezuelensis Kohls, 1953 but can be distinguished by their overall size, the amount of sclerotisation of the conscutum and accessory plates, the shape of the scutum, the number of punctations and their pattern on the conscutum and scutum, the depth of the punctations on the basis capituli dorsally, the shape and size of the porose areas and the size and shape of the auriculae. Adults of I. tapirus were collected from tapirs and vegetation in the mountains of Colombia, Panama and recorded from Costa Rica for the first time.

[A South American tapir (Tapirus terrestris) with peritonitis].

PubMed

van der Kolk, J H; van der Hage, M H

A 6-year-old male tapir was admitted because it had been anorexic for 1 day. On admission, the tapir weighed 160 kg. Its rectal temperature was 32.4 degrees C, its heart rate was 120 beats per minute, and its respiratory rate was 12 breaths per minute. The elasticity of the skin was diminished. Haematological evaluation upon admission revealed a haematocrit of 0.63 L.L-1., 6.0 G.L-1 leucocytes with 40 per cent band neutrophils. The concentrations of urea nitrogen and creatinine in plasma were raised (18.9 mmol L-1. and 475 mumol L-1., respectively). Severe combined acidosis was apparent; the venous pH was 6.965, the bicarbonate concentration was 13.7 mmol.L-1., and the venous pCO2 was 8.6 kPa. No strongyle eggs were isolated from faeces by flotation, but a faecal sample yielded a positive culture for Pseudomonas aeruginosa. Urinalysis revealed proteinuria and the presence of leucocytes and renal epithelial cells. Treatment with fluids, TMP/S (17.5 and 3.5 mg/kg body weight, twice a day, respectively), and clenbuterol (0.56 microgram/kg body weight, twice a day) intravenously was unsuccessful and the tapir died 4 days after hospitalization. At necropsy, peritonitis due to a colon infarct as well as chronic bronchopneumonia and renal tubulonecrosis were found. The antibiotic susceptibility of the bacteria isolated (Streptoc. sp., E. coli, and K. pneumoniae) from the tapir post-mortem was assessed.

[Perissodactyla: the primary structure of hemoglobins from the lowland tapir (Tapirus terrestris): glutamic acid in position 2 of the beta chains].

PubMed

Mazur, G; Braunitzer, G

1984-09-01

The hemoglobins from a lowland tapir (Tapirus terrestris) were analysed and the complete primary structure is described. The globin chains were separated on CM cellulose column in 8M urea and the amino-acid sequences were determined in the liquid phase sequenator. The results show that globin consists of two alpha chains (alpha I and alpha II) and beta major and beta minor components. The alpha chains differ only at one position: alpha I contains aspartic acid and alpha II glycine. The beta chains are heterogeneous: aspartic and glutamic acid were found at position beta 21 and beta 73 of the beta major components and asparagine and serine at position beta 139. In the beta minor components four positions were found with more than one amino acid, namely beta 2, beta 4, beta 6 and beta 56. The sequences are compared with those of man, horse and rhinoceros. Four residues of horse methemoglobin, which are involved in the alpha 1 beta 1 contacts are substituted in tapir hemoglobins. In the alpha chains: alpha 107(G14)Ser----Val, alpha 111-(G18) Val----Leu, alpha 115(GH3) Asn----Asp or Gly; in the beta chains: beta 116(G18) Arg----Gln. The amino acid at beta 2 of the major components is glutamic acid while glutamine and histidine are found in the minor components. Although glutamic acid, a binding site for ATP, does not interact with 2,3-bisphosphoglycerate, glutamine and histidine in the minor components are responsible for the slight effect of 2,3-bisphosphoglycerate on tapir hemoglobin.

Paleontology to policy: the Quaternary history of Southeast Asian tapirs (Tapiridae) in relation to large mammal species turnover, with a proposal for conservation of Malayan tapir by reintroduction to Borneo.

PubMed

Cranbrook, Earl Of; Piper, Philip J

2013-03-01

The Southeast Asian zoogeographical region is divided into Indochinese, Sundaic and Philippine subregions. Two clades of tapirs, Tapirus spp., have been recognized in Quaternary Southeast Asia. A review of sites at which they occurred shows that representatives of both clades, one of which was the ancestral Malayan tapir Tapirus indicus, co-existed with a diversity of other Pleistocene mammal megafauna. The process of replacement of archaic large mammals was progressive and prolonged through the Quaternary. Zooarcheological investigation has extended knowledge of the former occurrence and distribution of tapirs and other large mammals of the region, with discoveries beyond the outer limits of their previously known ranges. These large mammals were subjected to paleoenvironmental changes as a consequence of the Quaternary cycles of glacial and interglacial periods. Archeological evidence suggests that hunting pressure has intensified the effects of altered environments, leading ultimately to the local disappearance of the Malayan tapir in most of Southeast Asia, including Borneo. The survival of the Malayan tapir through the Quaternary until the present shows that the species is both resilient to environmental change and flexible in its ecological re'uirements and, given proper protection, could continue to inhabit tropical Southeast Asia. To assist the species conservation, reintroduction is proposed from the remaining range of Malayan tapir in the wild, to suitable sites of past occurrence in Borneo, where these ancient survivors of the Quaternary megafauna can be accommodated and safeguarded alongside other forms of land usage. © 2012 Wiley Publishing Asia Pty Ltd, ISZS and IOZ/CAS.

Distribution, habitat and adaptability of the genus Tapirus.

PubMed

García, Manolo J; Medici, Emília Patrícia; Naranjo, Eduardo J; Novarino, Wilson; Leonardo, Raquel S

2012-12-01

In this manuscript, as a starting point, the ancient and current distribution of the genus Tapirus are summarized, from its origins, apparently in Europe, to current ranges. Subsequently, original and current tapir habitats are described, as well as changes in ancient habitats. As the manuscript goes on, we examine the ways in which tapir species interact with their habitats and the main aspects of habitat use, spatial ecology and adaptability. Having reviewed the historic and current distribution of tapirs, as well as their use and selection of habitats, we introduce the concept of adaptability, considering that some of the tapir physiological characteristics and behavioral strategies can reduce the negative impact of habitat alteration and climate change. Finally, we provide recommendations for future research priorities. The conservation community is still missing important pieces of information for the effective conservation of tapirs and their remaining habitats in Central and South America and Southeast Asia. Reconstructing how tapir species reached their current distribution ranges, interpreting how they interact with their habitats and gathering information regarding the strategies they use to cope with habitat changes will increase our understanding about these animals and contribute to the development of conservation strategies. © 2012 Wiley Publishing Asia Pty Ltd, ISZS and IOZ/CAS.

Haemochromatosis in a Brazilian tapir (Tapirus terrestris) in an Australian zoo.

PubMed

Peters, A; Raidal, S R; Blake, A H; Atkinson, M M; Atkinson, P R; Eggins, G P

2012-01-01

A 23-year-old Brazilian, or lowland, tapir with a 6-month history of loss of body condition developed clinical signs and laboratory findings consistent with liver failure. The animal was euthanased and a diagnosis of hepatic haemochromatosis was made based on histopathology. Two other healthy tapirs in the same collection had chronically elevated serum and tissue iron concentrations. The excessive accumulation of iron in tissues with resultant tissue damage (i.e. haemochromatosis) has been reported in a range of captive species. This and other reported cases of haemochromatosis in the Brazilian tapir would suggest that this condition is an important consideration in the management of this species in zoos. Further research into the endogenous regulation of iron metabolism, especially the role of hepcidin, in tapirs and other species at risk of iron storage disorders may be helpful in the prevention of this condition. © 2012 The Authors. Australian Veterinary Journal © 2012 Australian Veterinary Association.

Comparative cranial ontogeny of Tapirus (Mammalia: Perissodactyla: Tapiridae).

PubMed

Moyano, S Rocio; Giannini, Norberto P

2017-11-01

Skull morphology in tapirs is particularly interesting due to the presence of a proboscis with important trophic, sensory and behavioral functions. Several studies have dealt with tapir skull osteology but chiefly in a comparative framework between fossil and recent species of tapirs. Only one study examined an aspect of cranial ontogeny, development of the sagittal crest (Holbrook. J Zool Soc Lond 2002; 256; 215). Our goal is to describe in detail the morphological changes that occur during the postnatal ontogeny of the skull in two representative tapir species, Tapirus terrestris and Tapirus indicus, and to explore possible functional consequences of their developmental trajectories. We compared qualitative features of the skull on a growth series of 46 specimens of T. terrestris ordered on the basis of the sequence of eruption and tooth wear, dividing the sample into three age classes: class Y (very young juvenile), class J (from young juvenile to young adult) and class A (full and old adult). The qualitative morphological analysis consisted of describing changes in the series in each skull bone and major skull structure, including the type and degree of transformation (e.g. appearance, fusion) of cranial features (e.g. processes, foramina) and articulations (sutures, synchondroses, and synovial joints). We then measured 23 cranial variables in 46 specimens of T. terrestris that included the entire ontogenetic series from newborn to old adults. We applied statistical multivariate techniques to describe allometric growth, and compared the results with the allometric trends calculated for a sample of 25 specimens of T. indicus. Results show that the skull structure was largely conserved throughout the postnatal ontogeny in T. terrestris, so class Y was remarkably similar to class A in overall shape, with the most significant changes localized in the masticatory apparatus, specifically the maxillary tuber as a support of the large-sized permanent postcanine

Ecology and local knowledge of the Baird's tapir (Tapirella bairdii) in the Sierra Madre de Oaxaca, Mexico.

PubMed

Lavariega Nolasco, Mario César; Briones-Salas, Miguel; Mazas-Teodocio, Amado; Durán-Medina, Elvira

2016-09-01

As well as being of global cultural importance (from local tribal folklore to being an iconic species for conservation), the tapir plays an important role in its ecosystem as a herbivore and seed disperser. However, the ecology and ethnozoology of the endangered Baird's tapir in the north of Oaxaca, Mexico is poorly understood. We used camera traps to estimate its relative abundance and density and to describe the activity patterns of the northernmost population of Baird's tapir in the Sierra Madre de Oaxaca. Local knowledge concerning the tapir was also documented, along with the conservation strategies undertaken by the 2 indigenous communities that own the land where the study site is located. Only adult tapirs were photographed, and these were active 14 h per day, but were mainly nocturnal and crepuscular. The estimated relative abundance (12.99 ± 2.24 events/1000 camera days) and density values (0.07-0.24 individuals/km(2) ) were both similar to those found in another site in Mexico located within a protected area. Semi-structured interviews revealed that people have a basic understanding of the eating habits, activity and main predators of the tapir. There were reports of hunting, although not among those respondents who regularly consume bush meat. Thus, the relative abundance and density estimates of tapir at the study site could be related to the favorable condition of the forest and the absence of hunting and consumption of tapir meat. Fortunately, the local people are conducting initiatives promoting the conservation of this ungulate and its habitat that combine to constitute a regional trend of habitat and wildlife protection. © 2016 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and John Wiley & Sons Australia, Ltd.

Determining the numbers of a landscape architect species (Tapirus terrestris), using footprints.

PubMed

Moreira, Danielle O; Alibhai, Sky K; Jewell, Zoe C; da Cunha, Cristina J; Seibert, Jardel B; Gatti, Andressa

2018-01-01

As a landscape architect and a major seed disperser, the lowland tapir ( Tapirus terrestris ) is an important indicator of the ecological health of certain habitats. Therefore, reliable data regarding tapir populations are fundamental in understanding ecosystem dynamics, including those associated with the Atlantic Forest in Brazil. Currently, many population monitoring studies use invasive tagging with radio or satellite/Global Positioning System (GPS) collars. These techniques can be costly and unreliable, and the immobilization required carries physiological risks that are undesirable particularly for threatened and elusive species such as the lowland tapir. We collected data from one of the last regions with a viable population of lowland tapir in the south-eastern Atlantic Forest, Brazil, using a new non-invasive method for identifying species, the footprint identification technique (FIT). We identified the minimum number of tapirs in the study area and, in addition, we observed that they have overlapping ranges. Four hundred and forty footprints from 46 trails collected from six locations in the study area in a landscape known to contain tapir were analyzed, and 29 individuals were identified from these footprints. We demonstrate a practical application of FIT for lowland tapir censusing. Our study shows that FIT is an effective method for the identification of individuals of a threatened species, even when they lack visible natural markings on their bodies. FIT offers several benefits over other methods, especially for tapir management. As a non-invasive method, it can be used to census or monitor species, giving rapid feedback to managers of protected areas.

Determining the numbers of a landscape architect species (Tapirus terrestris), using footprints

PubMed Central

da Cunha, Cristina J.

2018-01-01

Background As a landscape architect and a major seed disperser, the lowland tapir (Tapirus terrestris) is an important indicator of the ecological health of certain habitats. Therefore, reliable data regarding tapir populations are fundamental in understanding ecosystem dynamics, including those associated with the Atlantic Forest in Brazil. Currently, many population monitoring studies use invasive tagging with radio or satellite/Global Positioning System (GPS) collars. These techniques can be costly and unreliable, and the immobilization required carries physiological risks that are undesirable particularly for threatened and elusive species such as the lowland tapir. Methods We collected data from one of the last regions with a viable population of lowland tapir in the south-eastern Atlantic Forest, Brazil, using a new non-invasive method for identifying species, the footprint identification technique (FIT). Results We identified the minimum number of tapirs in the study area and, in addition, we observed that they have overlapping ranges. Four hundred and forty footprints from 46 trails collected from six locations in the study area in a landscape known to contain tapir were analyzed, and 29 individuals were identified from these footprints. Discussion We demonstrate a practical application of FIT for lowland tapir censusing. Our study shows that FIT is an effective method for the identification of individuals of a threatened species, even when they lack visible natural markings on their bodies. FIT offers several benefits over other methods, especially for tapir management. As a non-invasive method, it can be used to census or monitor species, giving rapid feedback to managers of protected areas. PMID:29610711

Genetic diversity of the captive Asian tapir population in Thailand, based on mitochondrial control region sequence data and the comparison of its nucleotide structure with Brazilian tapir.

PubMed

Muangkram, Yuttamol; Amano, Akira; Wajjwalku, Worawidh; Pinyopummintr, Tanu; Thongtip, Nikorn; Kaolim, Nongnid; Sukmak, Manakorn; Kamolnorranath, Sumate; Siriaroonrat, Boripat; Tipkantha, Wanlaya; Maikaew, Umaporn; Thomas, Warisara; Polsrila, Kanda; Dongsaard, Kwanreaun; Sanannu, Saowaphang; Wattananorrasate, Anuwat

2017-07-01

The Asian tapir (Tapirus indicus) has been classified as Endangered on the IUCN Red List of Threatened Species (2008). Genetic diversity data provide important information for the management of captive breeding and conservation of this species. We analyzed mitochondrial control region (CR) sequences from 37 captive Asian tapirs in Thailand. Multiple alignments of the full-length CR sequences sized 1268 bp comprised three domains as described in other mammal species. Analysis of 16 parsimony-informative variable sites revealed 11 haplotypes. Furthermore, the phylogenetic analysis using median-joining network clearly showed three clades correlated with our earlier cytochrome b gene study in this endangered species. The repetitive motif is located between first and second conserved sequence blocks, similar to the Brazilian tapir. The highest polymorphic site was located in the extended termination associated sequences domain. The results could be applied for future genetic management based in captivity and wild that shows stable populations.

Predicting the distribution of the Asian tapir in Peninsular Malaysia using maximum entropy modeling.

PubMed

Clements, Gopalasamy Reuben; Rayan, D Mark; Aziz, Sheema Abdul; Kawanishi, Kae; Traeholt, Carl; Magintan, David; Yazi, Muhammad Fadlli Abdul; Tingley, Reid

2012-12-01

In 2008, the IUCN threat status of the Asian tapir (Tapirus indicus) was reclassified from 'vulnerable' to 'endangered'. The latest distribution map from the IUCN Red List suggests that the tapirs' native range is becoming increasingly fragmented in Peninsular Malaysia, but distribution data collected by local researchers suggest a more extensive geographical range. Here, we compile a database of 1261 tapir occurrence records within Peninsular Malaysia, and demonstrate that this species, indeed, has a much broader geographical range than the IUCN range map suggests. However, extreme spatial and temporal bias in these records limits their utility for conservation planning. Therefore, we used maximum entropy (MaxEnt) modeling to elucidate the potential extent of the Asian tapir's occurrence in Peninsular Malaysia while accounting for bias in existing distribution data. Our MaxEnt model predicted that the Asian tapir has a wider geographic range than our fine-scale data and the IUCN range map both suggest. Approximately 37% of Peninsular Malaysia contains potentially suitable tapir habitats. Our results justify a revision to the Asian tapir's extent of occurrence in the IUCN Red List. Furthermore, our modeling demonstrated that selectively logged forests encompass 45% of potentially suitable tapir habitats, underscoring the importance of these habitats for the conservation of this species in Peninsular Malaysia. © 2012 Wiley Publishing Asia Pty Ltd, ISZS and IOZ/CAS.

Lowland tapir (Tapirus terrestris) distribution, activity patterns and relative abundance in the Greater Madidi-Tambopata Landscape.

PubMed

Wallace, Robert; Ayala, Guido; Viscarra, Maria

2012-12-01

Lowland tapir distribution is described in northwestern Bolivia and southeastern Peru within the Greater Madidi-Tambopata Landscape, a priority Tapir Conservation Unit, using 1255 distribution points derived from camera trapping efforts, field research and interviews with park guards from 5 national protected areas and hunters from 19 local communities. A total of 392 independent camera trapping events from 14 camera trap surveys at 11 sites demonstrated the nocturnal and crepuscular activity patterns (86%) of the lowland tapir and provide 3 indices of relative abundance for spatial and temporal comparison. Capture rates for lowland tapirs were not significantly different between camera trapping stations placed on river beaches versus those placed in the forest. Lowland tapir capture rates were significantly higher in the national protected areas of the region versus indigenous territories and unprotected portions of the landscape. Capture rates through time suggested that lowland tapir populations are recovering within the Tuichi Valley, an area currently dedicated towards ecotourism activities, following the creation (1995) and subsequent implementation (1997) of the Madidi National Park in Bolivia. Based on our distributional data and published conservative estimates of population density, we calculated that this transboundary landscape holds an overall lowland tapir population of between 14 540 and 36 351 individuals, of which at least 24.3% are under protection from national and municipal parks. As such, the Greater Madidi-Tambopata Landscape should be considered a lowland tapir population stronghold and priority conservation efforts are discussed in order to maintain this population. © 2012 Wiley Publishing Asia Pty Ltd, ISZS and IOZ/CAS.

Fruit consumption and seed dispersal of Dimorphandra mollis Benth. (Leguminosae) by the lowland tapir in the cerrado of Central Brazil.

PubMed

Bizerril, M X A; Rodrigues, F H G; Hass, A

2005-08-01

Fruit phenology observations and consumption of Dimorphandra mollis (Leguminosae) were analyzed during seven months in an area of cerrado stricto sensu. We analysed 81 fecal samples collected at six different places of lowland tapirs (Tapirus terrestris) in central Brazilian cerrado. In addition, from the feces of five tapirs at the Brasília Zoo to which fruit had been offered, seeds were collected and used in germination tests. The results suggest that the tapir is an important fruit consumer and a potential seed disperser of D. mollis. In the field, however, fruit consumption was found to be very low, probably because of both fruit palatability and the low density of frugivores, especially tapirs. The possibility that the original dispersal agents of D. mollis seeds belonged to the South American Pleistocene megafauna is discussed.

An outbreak of Salmonella enterica serotype Choleraesuis in goitered gazelle (Gazella subgutrosa subgutrosa) and a Malayan tapir (Tapirus indicus).

PubMed

Wolf, Tiffany M; Wünschmann, Arno; Morningstar-Shaw, Brenda; Pantlin, Gayle C; Rasmussen, James M; Thompson, Rachel L

2011-12-01

An outbreak of Salmonella enterica serotype Choleraesuis enteritis occurred in two juvenile goitered gazelles and an adult Malayan tapir over a period of 5 wk at the Minnesota Zoo. Diagnosis was made postmortem on one gazelle and one tapir, and a second gazelle was diagnosed via fecal culture. The death of the tapir was attributed to S. enterica serovar Choleraesuis septicemia, while salmonellosis was considered to be a contributing factor besides ostertagiasis for the death of one goitered gazelle and for the diarrhea of another goitered gazelle. A third gazelle became ill in the same time period, but Salmonella infection was not confirmed by culture. All exhibited the clinical signs of profuse, watery diarrhea. The gazelles developed a protein-losing enteropathy, and the tapir showed signs of sepsis and endotoxemia. Serotyping and pulsed-field gel electrophoresis revealed the Salmonella isolates to be indistinguishable from each other. One year prior to this outbreak, Salmonella sp. was cultured from a Visayan warty pig (Sus cebifrons) housed in the same building as the tapir. After further investigation into the outbreak, spread of this pathogen was speculated to be associated with human movement across animal areas.

Can enrichment make Brazilian tapir spend more time on view to the public?

PubMed

Dutra, Luísa Mascarenhas Ladeia; Young, Robert John

2015-01-01

One common visitor complaint in zoos is that the nonhuman animals are not visible. This problem needs to be resolved without compromising the animals' welfare; environmental enrichment could solve the problem. This study investigated whether enrichment would increase public exposure time of lowland tapir (Tapirus terrestris) in the Belo Horizonte Zoo in Minas Gerais, Brazil. Observations were made before (62 hr) and during (62 hr) the introduction of enrichment using focal animal sampling with instantaneous recording of behavior. The 5 enrichment items were a bamboo fence covered in vines, logs, a sandbox, dry leaves, and bamboo bushes. Before the enrichments were applied, the tapir was not visible to the public for more than 85% of the time. In addition, during the analysis of the enrichment treatment, other variables were considered--such as weekday, time of day, and weather conditions--which could influence the animals' interaction with the enrichments. The enrichments increased and decreased the expression of some behaviors; however, public viewing time of the animals did not increase. Thus, the enrichment applied was not strong enough to overcome the animals' crepuscular behavior.

Genetic approaches refine ex situ lowland tapir (Tapirus terrestris) conservation.

PubMed

Gonçalves da Silva, Anders; Lalonde, Danielle R; Quse, Viviana; Shoemaker, Alan; Russello, Michael A

2010-01-01

Ex situ conservation management remains an important tool in the face of continued habitat loss and global environmental change. Here, we use microsatellite marker variation to evaluate conventional assumptions of pedigree-based ex situ population management and directly inform a captive lowland tapir breeding program within a range country. We found relatively high levels of genetic variation (N(total) = 41; mean H(E) = 0.67 across 10 variable loci) and little evidence for relatedness among founder individuals (N(founders) = 10; mean relatedness = -0.05). Seven of 29 putative parent-offspring relationships were excluded by parentage analysis based on allele sharing, and we identified 2 individuals of high genetic value to the population (mk

Seed germination from lowland tapir (Tapirus terrestris) fecal samples collected during the dry season in the Northern Brazilian Amazon.

PubMed

Barcelos, Adriana Renata; Bobrowiec, Paulo Estefano D; Sanaiotti, Tânia Margarete; Gribel, Rogério

2013-03-01

This study evaluated the potential of lowland tapirs as seed dispersers in the northern Brazilian Amazon. The study analyzed the viability of seeds after passage through the gut. Fecal samples were collected from 6 different vegetation physiognomies in Viruá National Park during the dry season. The samples were then kept in a greenhouse for 16 months to allow the seeds to germinate. The seedling species were identified and classified according to the type of fruit, plant habit, seed size and type of ingestion. Of the 111 fecal samples, 94 (84.7%) had viable seeds of 75 species. Melastomataceae was the most frequent family with viable seeds in the fecal samples (69.1% of samples, N= 18 species). The data suggest that the importance of the lowland tapirs as dispersers is not restricted to the species consumed actively by frugivory but also extends to species accidentally consumed during browsing. The occurrence of both large and small viable seeds in the fecal samples as well as a number of large drupes, which probably cannot be transported via endozoochory by any other animal species, provide evidence of the ecological importance of lowland tapirs to the dynamics of the forest-campinarana vegetation mosaic in the region. © 2012 Wiley Publishing Asia Pty Ltd, ISZS and IOZ/CAS.

Tapir health and conservation medicine.

PubMed

Mangini, Paulo Rogerio; Medici, Emilia Patrícia; Fernandes-Santos, Renata Carolina

2012-12-01

Tapirs have unique nutritional needs, as well as anatomical, physiological, behavioral and ecological adaptations that must be considered when managing their health, both in the wild and in captivity. Information about how tapirs live in their natural habitats can provide crucial knowledge to prevent many of the health problems found in captivity such as infectious and parasitic diseases, reproductive issues and nutritional and behavioral disorders. Likewise, proper management in captivity can significantly contribute to in situ conservation programs. Conservation medicine is a science created to address the global health crisis that jeopardizes biodiversity causing imbalances among ecosystem, human, animal and vegetal health. In this context, common threats to tapir health and conservation, such as isolated and small populations surrounded by human activity, chemical pollution, domestic animals and their pathogenic agents, need to be better understood. This manuscript provides information about the health of tapirs both in captivity and in the wild and aims to encourage tapir conservationists worldwide to gather information about pathogen and disease dynamics and manifestation, as well as implications for tapir conservation. © 2012 Wiley Publishing Asia Pty Ltd, ISZS and IOZ/CAS.

Cultural Resources Intensive Survey and Testing of Mississippi River Levee Berms Crittenden and Desha Counties, Arkansas and Mississippi, Scott, Cape Girardeau and Pemiscot Counties, Missouri. Item R-48.87 A.C. Nash; Missouri, Relief Well Ditches Cape Girardeau and Scott Counties, Missouri

DTIC Science & Technology

1983-07-01

denizens and occurred in the study area. Maps presented by Simpson (1945) indicate that the genus Tapirus ( tapirs ) occurred in the study area. Mosimann and...Felines in North America. The American Museum of Natural History, No. 1136, pp. 20-27. 1945 Notes on Pleistocene and Recent Tapirs . Bulletin of the

Frugivory and seed dispersal by tapirs: an insight on their ecological role.

PubMed

O'Farrill, Georgina; Galetti, Mauro; Campos-Arceiz, Ahimsa

2013-03-01

Tapirs are one of the last extant megafauna species that survived the Pleistocene extinctions. Given their size and digestive system characteristics, tapirs might be the last potential seed disperser of plant species that were previously dispersed by other large mammal species that are now extinct. We compiled evidence from 39 published scientific studies showing that tapirs have a key role as seed dispersers and seed predators. Tapirs play an important role either through seed predation or by facilitating the recruitment of seeds over long distances, therefore influencing the diversity of plant species in the ecosystem. Neotropical tapirs might have a unique role as long-distance seed dispersers of large seeds (<20 mm) because they are capable of depositing viable large seeds in favorable places for germination that even large-bodied primates cannot disperse. Given the high diversity of seed species found in tapir diet, more information is needed on the identification of seed traits that allow the survival of seeds in the tapir's gut. Moreover, further studies are necessary on the role of tapirs as seed dispersers and predators; in particular considering spatial patterns of dispersed seeds, seed viability, effect of dung, and seed density in tapir latrines, and the effect of deposition sites on germination and seedling survival. Because all tapir species are highly threatened, it is paramount to identify gaps in our knowledge on the ecological role of tapirs and, in particular, on critical and endangered plant-tapir interactions to avoid possible trophic cascading effects on ecosystem function. © 2012 Wiley Publishing Asia Pty Ltd, ISZS and IOZ/CAS.

77 FR 26779 - Endangered Species; Receipt of Applications for Permit

Federal Register 2010, 2011, 2012, 2013, 2014

2012-05-07

... Boidae Genera: Panthera Tragopan Species: snow leopard (Uncia uncia) black-footed cat (Felis nigripes... diana) mandrill (Mandrillus sphinx) lar gibbon (Hylobates lar) siamang (Symphalangus syndactylus) snow leopard (Uncia uncia) leopard (Panthera pardus) cheetah (Acinonyx jubatus) South American tapir (Tapirus...

77 FR 41198 - Endangered Species; Marine Mammals; Receipt of Applications for Permit

Federal Register 2010, 2011, 2012, 2013, 2014

2012-07-12

... male and a female mountain tapir (Tapirus pinchaque), which were captive bred at the applicant's... of the species through captive breeding and conservation education. Applicant: Denver Zoological... the survival of the species through captive breeding and conservation education. Applicant: Denver...

Subarctic, alpine nesting by Bairds Sandpipers Calidris bairdii

USGS Publications Warehouse

Gill, Robert E.; Tomkovich, Pavel S.

2004-01-01

Baird's Sandpipers Calidris bairdii were found nesting in alpine habitat in southwestern Alaska (60°48'N, 154°00'W), almost 250 km from the nearest known breeding site, and studied over three consecutive seasons, 1997-1999. The first birds arrived during the second week of May each spring with peak numbers recorded the third week of May. Most nests and newly hatched broods were found on sparsely vegetated dwarf shrub-lichen mat tundra on level or gently sloping areas throughout the alpine zone between 980 and 1400 m above sea level. Most eggs hatched during the third week of June and independent young were noted during the second and third weeks of July. Both parents initially tended broods, but only the male remained after chicks were about four days of age. During early brood-rearing, adults began to move chicks, often to higher elevations and over distances of several hundred metres. Throughout the area the density of nesting birds was about 0.2 pairs/km 2 with up to 0.9 pairs/km 2 found on southerly exposures of the north study slope. A summary of available information revealed the global nesting distribution of bairdii to be strongly associated with disturbed landscapes, especially montane areas affected by glaciation, suggesting the breeding range is likely to be much more extensive than currently known, especially in areas of Alaska, the Yukon, and possibly Chukotka.

Lowland tapir distribution and habitat loss in South America.

PubMed

Cordeiro, Jose Luis Passos; Fragoso, José M V; Crawshaw, Danielle; Oliveira, Luiz Flamarion B

2016-01-01

The development of species distribution models (SDMs) can help conservation efforts by generating potential distributions and identifying areas of high environmental suitability for protection. Our study presents a distribution and habitat map for lowland tapir in South America. We also describe the potential habitat suitability of various geographical regions and habitat loss, inside and outside of protected areas network. Two different SDM approaches, MAXENT and ENFA, produced relative different Habitat Suitability Maps for the lowland tapir. While MAXENT was efficient at identifying areas as suitable or unsuitable, it was less efficient (when compared to the results by ENFA) at identifying the gradient of habitat suitability. MAXENT is a more multifaceted technique that establishes more complex relationships between dependent and independent variables. Our results demonstrate that for at least one species, the lowland tapir, the use of a simple consensual approach (average of ENFA and MAXENT models outputs) better reflected its current distribution patterns. The Brazilian ecoregions have the highest habitat loss for the tapir. Cerrado and Atlantic Forest account for nearly half (48.19%) of the total area lost. The Amazon region contains the largest area under protection, and the most extensive remaining habitat for the tapir, but also showed high levels of habitat loss outside protected areas, which increases the importance of support for proper management.

Lowland tapir distribution and habitat loss in South America

PubMed Central

Fragoso, José M.V.; Crawshaw, Danielle; Oliveira, Luiz Flamarion B.

2016-01-01

The development of species distribution models (SDMs) can help conservation efforts by generating potential distributions and identifying areas of high environmental suitability for protection. Our study presents a distribution and habitat map for lowland tapir in South America. We also describe the potential habitat suitability of various geographical regions and habitat loss, inside and outside of protected areas network. Two different SDM approaches, MAXENT and ENFA, produced relative different Habitat Suitability Maps for the lowland tapir. While MAXENT was efficient at identifying areas as suitable or unsuitable, it was less efficient (when compared to the results by ENFA) at identifying the gradient of habitat suitability. MAXENT is a more multifaceted technique that establishes more complex relationships between dependent and independent variables. Our results demonstrate that for at least one species, the lowland tapir, the use of a simple consensual approach (average of ENFA and MAXENT models outputs) better reflected its current distribution patterns. The Brazilian ecoregions have the highest habitat loss for the tapir. Cerrado and Atlantic Forest account for nearly half (48.19%) of the total area lost. The Amazon region contains the largest area under protection, and the most extensive remaining habitat for the tapir, but also showed high levels of habitat loss outside protected areas, which increases the importance of support for proper management. PMID:27672509

Resistance to Antibiotics of Clinical Relevance in the Fecal Microbiota of Mexican Wildlife

PubMed Central

Cristóbal-Azkarate, Jurgi; Dunn, Jacob C.; Day, Jennifer M. W.; Amábile-Cuevas, Carlos F.

2014-01-01

There are a growing number of reports of antibiotic resistance (ATBR) in bacteria living in wildlife. This is a cause for concern as ATBR in wildlife represents a potential public health threat. However, little is known about the factors that might determine the presence, abundance and dispersion of ATBR bacteria in wildlife. Here, we used culture and molecular methods to assess ATBR in bacteria in fecal samples from howler monkeys (Alouatta palliata), spider monkeys (Ateles geoffroyi), tapirs (Tapirus bairdii) and felids (jaguars, Panthera onca; pumas, Puma concolor; jaguarundis, Puma yagouaroundi; and ocelots, Leopardus pardalis) living freely in two regions of the Mexican state of Veracruz under different degrees of human influence. Overall, our study shows that ATBR is commonplace in bacteria isolated from wildlife in southeast Mexico. Most of the resistances were towards old and naturally occurring antibiotics, but we also observed resistances of potential clinical significance. We found that proximity to humans positively affected the presence of ATBR and that ATBR was higher in terrestrial than arboreal species. We also found evidence suggesting different terrestrial and aerial routes for the transmission of ATBR between humans and wildlife. The prevalence and potential ATBR transfer mechanisms between humans and wildlife observed in this study highlight the need for further studies to identify the factors that might determine ATBR presence, abundance and distribution. PMID:25233089

Surgical management of an abdominal abscess in a Malayan tapir.

PubMed

Lambeth, R R; Dart, A J; Vogelnest, L; Dart, C M; Hodgson, D R

1998-10-01

A captive Malayan tapir was observed to have inappetence, weight loss, signs of depression, mild dehydration and diarrhoea. Haematological and serum biochemical tests showed anaemia, hypoproteinaemia, hyperfibrinogenaemia and neutrophilia with a left shift. Ultrasonic examination of the abdomen under anaesthesia revealed a well-encapsulated abscess. The abscess was marsupialised to the ventral body wall. Culture of the pus produced a mixed bacterial growth. Antimicrobial therapy was based on bacterial sensitivity results. Follow-up ultrasonic examinations showed resolution of the abscess. Ninety-one days after surgery the tapir began regurgitating food and water. An abscess originating from the stomach and occluding the lumen of the duodenum was identified at surgery. The abscess ruptured during surgical manipulations and the tapir was euthanased.

Clinical observations with AN-1792 using TAPIR analyses.

PubMed

Hock, Christoph; Nitsch, Roger M

2005-01-01

Clinical observations with AN-1792 using tissue amyloid plaque immunoreactivity (TAPIR) analyses established for the first time evidence in humans that antibodies against beta-amyloid-related epitopes are capable of slowing progression in Alzheimer's disease. Antibodies derived upon TAPIR assay selection may specifically target the pathologic neoepitopes of aggregated A beta species present in amyloid plaques and some of their aggregated, protofibrillar and low molecular weight oligomeric precursors. We briefly summarize here how the proof of concept was established and why it provides the basis for a potential cure for Alzheimer's disease. Copyright 2005 S. Karger AG, Basel.

Population viability analysis: using a modeling tool to assess the viability of tapir populations in fragmented landscapes.

PubMed

Medici, Emília Patrícia; Desbiez, Arnaud Leonard Jean

2012-12-01

A population viability analysis (PVA) was conducted of the lowland tapir populations in the Atlantic Forest of the Pontal do Paranapanema region, Brazil, including Morro do Diabo State Park (MDSP) and surrounding forest fragments. Results from the model projected that the population of 126 tapirs in MDSP is likely to persist over the next 100 years; however, 200 tapirs would be required to maintain a viable population. Sensitivity analysis showed that sub-adult mortality and adult mortality have the strongest influence on the dynamics of lowland tapir populations. High road-kill has a major impact on the MDSP tapir population and can lead to population extinction. Metapopulation modeling showed that dispersal of tapirs from MDSP to the surrounding fragments can be detrimental to the overall metapopulation, as fragments act as sinks. Nevertheless, the model showed that under certain conditions the maintenance of the metapopulation dynamics might be determinant for the persistence of tapirs in the region, particularly in the smaller fragments. The establishment of corridors connecting MDSP to the forest fragments models resulted in an increase in the stochastic growth rate, making tapirs more resilient to threats and catastrophes, but only if rates of mortality were not increased when using corridors. The PVA showed that the conservation of tapirs in the Pontal region depends on: the effective protection of MDSP; maintenance and, whenever possible, enhancement of the functional connectivity of the landscape, reducing mortality during dispersal and threats in the unprotected forest fragments; and neutralization of all threats affecting tapirs in the smaller forest fragments. © 2012 Wiley Publishing Asia Pty Ltd, ISZS and IOZ/CAS.

Efficient visualization of high-throughput targeted proteomics experiments: TAPIR.

PubMed

Röst, Hannes L; Rosenberger, George; Aebersold, Ruedi; Malmström, Lars

2015-07-15

Targeted mass spectrometry comprises a set of powerful methods to obtain accurate and consistent protein quantification in complex samples. To fully exploit these techniques, a cross-platform and open-source software stack based on standardized data exchange formats is required. We present TAPIR, a fast and efficient Python visualization software for chromatograms and peaks identified in targeted proteomics experiments. The input formats are open, community-driven standardized data formats (mzML for raw data storage and TraML encoding the hierarchical relationships between transitions, peptides and proteins). TAPIR is scalable to proteome-wide targeted proteomics studies (as enabled by SWATH-MS), allowing researchers to visualize high-throughput datasets. The framework integrates well with existing automated analysis pipelines and can be extended beyond targeted proteomics to other types of analyses. TAPIR is available for all computing platforms under the 3-clause BSD license at https://github.com/msproteomicstools/msproteomicstools. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Brazil The Duck Lagoon

NASA Technical Reports Server (NTRS)

2002-01-01

(Ruppia maritima) which reaches peak production during summer. Sea turtles (Chelonia mydas) can be found in the lagoon during spring and summer. Although the lowland tapir (Tapirus terrestris) is found in some parts of Rio Grande do Sul, the Baird's tapir (Tapirus bairdii), is not distributed within the image area (it is restricted to Central America). MISR was built and is managed by NASA's Jet Propulsion Laboratory, Pasadena, CA, for NASA's Office of Earth Science, Washington, DC. The Terra satellite is managed by NASA's Goddard Space Flight Center, Greenbelt, MD. JPL is a division of the California Institute of Technology. Image credit: NASA/GSFC/LaRC/JPL, MISR Team.

TAPIR, a web server for the prediction of plant microRNA targets, including target mimics.

PubMed

Bonnet, Eric; He, Ying; Billiau, Kenny; Van de Peer, Yves

2010-06-15

We present a new web server called TAPIR, designed for the prediction of plant microRNA targets. The server offers the possibility to search for plant miRNA targets using a fast and a precise algorithm. The precise option is much slower but guarantees to find less perfectly paired miRNA-target duplexes. Furthermore, the precise option allows the prediction of target mimics, which are characterized by a miRNA-target duplex having a large loop, making them undetectable by traditional tools. The TAPIR web server can be accessed at: http://bioinformatics.psb.ugent.be/webtools/tapir. Supplementary data are available at Bioinformatics online.

Diversity and activity pattern of wildlife inhabiting catchment of Hulu Terengganu Hydroelectric Dam, Terengganu, Peninsular Malaysia

NASA Astrophysics Data System (ADS)

Adyla, M. N. Nurul; Ikhwan, Z.; Zuhairi, M.; Ngah, Shukor, M. N.

2016-11-01

A series of camera trapping surveys were conducted to study the diversity and distribution of wildlife within the catchment of Hulu Terengganu Hydroelectric Dam. A total of 124 camera traps were deployed at nine study sites, continuously from June 2014 until December 2015. The total effort of camera trap surveys from all the study sites during the 18-month sampling period was 29,128 night traps, from which a total of 32 species of wildlife representing nine Orders were recorded. The most common species were Eurasian Wild Pig (Sus scrofa), Barking Deer (Munticus muntjak), and Malayan Tapir (Tapirus indicus). Camera trap data on activity patterns show that Gallus gallus, Muntiacus muntjak and Sus scrofa are diurnal animals, whereas Tapirus indicus, Elephas maximus and Helarctos malayanus are nocturnal animals.

Functional Redundancy and Complementarities of Seed Dispersal by the Last Neotropical Megafrugivores

PubMed Central

Bueno, Rafael S.; Guevara, Roger; Ribeiro, Milton C.; Culot, Laurence; Bufalo, Felipe S.; Galetti, Mauro

2013-01-01

Background Functional redundancy has been debated largely in ecology and conservation, yet we lack detailed empirical studies on the roles of functionally similar species in ecosystem function. Large bodied frugivores may disperse similar plant species and have strong impact on plant recruitment in tropical forests. The two largest frugivores in the neotropics, tapirs (Tapirus terrestris) and muriquis (Brachyteles arachnoides) are potential candidates for functional redundancy on seed dispersal effectiveness. Here we provide a comparison of the quantitative, qualitative and spatial effects on seed dispersal by these megafrugivores in a continuous Brazilian Atlantic forest. Methodology/Principal Findings We found a low overlap of plant species dispersed by both muriquis and tapirs. A group of 35 muriquis occupied an area of 850 ha and dispersed 5 times more plant species, and 13 times more seeds than 22 tapirs living in the same area. Muriquis dispersed 2.4 times more seeds in any random position than tapirs. This can be explained mainly because seed deposition by muriquis leaves less empty space than tapirs. However, tapirs are able to disperse larger seeds than muriquis and move them into sites not reached by primates, such as large forest gaps, open areas and fragments nearby. Based on published information we found 302 plant species that are dispersed by at least one of these megafrugivores in the Brazilian Atlantic forest. Conclusions/Significance Our study showed that both megafrugivores play complementary rather than redundant roles as seed dispersers. Although tapirs disperse fewer seeds and species than muriquis, they disperse larger-seeded species and in places not used by primates. The selective extinction of these megafrugivores will change the spatial seed rain they generate and may have negative effects on the recruitment of several plant species, particularly those with large seeds that have muriquis and tapirs as the last living seed dispersers. PMID

Functional redundancy and complementarities of seed dispersal by the last neotropical megafrugivores.

PubMed

Bueno, Rafael S; Guevara, Roger; Ribeiro, Milton C; Culot, Laurence; Bufalo, Felipe S; Galetti, Mauro

2013-01-01

Functional redundancy has been debated largely in ecology and conservation, yet we lack detailed empirical studies on the roles of functionally similar species in ecosystem function. Large bodied frugivores may disperse similar plant species and have strong impact on plant recruitment in tropical forests. The two largest frugivores in the neotropics, tapirs (Tapirus terrestris) and muriquis (Brachyteles arachnoides) are potential candidates for functional redundancy on seed dispersal effectiveness. Here we provide a comparison of the quantitative, qualitative and spatial effects on seed dispersal by these megafrugivores in a continuous Brazilian Atlantic forest. We found a low overlap of plant species dispersed by both muriquis and tapirs. A group of 35 muriquis occupied an area of 850 ha and dispersed 5 times more plant species, and 13 times more seeds than 22 tapirs living in the same area. Muriquis dispersed 2.4 times more seeds in any random position than tapirs. This can be explained mainly because seed deposition by muriquis leaves less empty space than tapirs. However, tapirs are able to disperse larger seeds than muriquis and move them into sites not reached by primates, such as large forest gaps, open areas and fragments nearby. Based on published information we found 302 plant species that are dispersed by at least one of these megafrugivores in the Brazilian Atlantic forest. Our study showed that both megafrugivores play complementary rather than redundant roles as seed dispersers. Although tapirs disperse fewer seeds and species than muriquis, they disperse larger-seeded species and in places not used by primates. The selective extinction of these megafrugivores will change the spatial seed rain they generate and may have negative effects on the recruitment of several plant species, particularly those with large seeds that have muriquis and tapirs as the last living seed dispersers.

Tapir: A web interface for transit/eclipse observability

NASA Astrophysics Data System (ADS)

Jensen, Eric

2013-06-01

Tapir is a set of tools, written in Perl, that provides a web interface for showing the observability of periodic astronomical events, such as exoplanet transits or eclipsing binaries. The package provides tools for creating finding charts for each target and airmass plots for each event. The code can access target lists that are stored on-line in a Google spreadsheet or in a local text file.

Error reduction and parameter optimization of the TAPIR method for fast T1 mapping.

PubMed

Zaitsev, M; Steinhoff, S; Shah, N J

2003-06-01

A methodology is presented for the reduction of both systematic and random errors in T(1) determination using TAPIR, a Look-Locker-based fast T(1) mapping technique. The relations between various sequence parameters were carefully investigated in order to develop recipes for choosing optimal sequence parameters. Theoretical predictions for the optimal flip angle were verified experimentally. Inversion pulse imperfections were identified as the main source of systematic errors in T(1) determination with TAPIR. An effective remedy is demonstrated which includes extension of the measurement protocol to include a special sequence for mapping the inversion efficiency itself. Copyright 2003 Wiley-Liss, Inc.

Unveiling the diet of elusive rainforest herbivores in next generation sequencing era? The tapir as a case study.

PubMed

Hibert, Fabrice; Taberlet, Pierre; Chave, Jérôme; Scotti-Saintagne, Caroline; Sabatier, Daniel; Richard-Hansen, Cécile

2013-01-01

Characterizing the trophic relationships between large herbivores and the outstanding plant diversity in rainforest is a major challenge because of their elusiveness. This is crucial to understand the role of these herbivores in the functioning of the rainforest ecosystems. We tested a non-invasive approach based on the high-throughput sequencing of environmental samples using small plant plastid sequences (the trnL P6 loop) and ribosomal ITS1 primers, referred to as DNA metabarcoding, to investigate the diet of the largest neotropical herbivore, the lowland tapir. Sequencing was performed on plant DNA extracted from tapir faeces collected at the Nouragues station, a protected area of French Guiana. In spite of a limited sampling, our approach reliably provided information about the lowland tapir's diet at this site. Indeed, 95.1% and 74.4% of the plant families and genera identified thanks to the trnL P6 loop, respectively, matched with taxa already known to be consumed by tapirs. With this approach we were able to show that two families and eight new genera are also consumed by the lowland tapir. The taxonomic resolution of this method is limited to the plant family and genera. Complementary barcodes, such as a small portion of ITS1, can be used to efficiently narrow identifications down to the species in some problematic families. We will discuss the remaining limitations of this approach and how useful it is at this stage to unravel the diet of elusive rainforest herbivores and better understand their role as engineers of the ecosystem.

Unveiling the Diet of Elusive Rainforest Herbivores in Next Generation Sequencing Era? The Tapir as a Case Study

PubMed Central

Hibert, Fabrice; Taberlet, Pierre; Chave, Jérôme; Scotti-Saintagne, Caroline; Sabatier, Daniel; Richard-Hansen, Cécile

2013-01-01

Characterizing the trophic relationships between large herbivores and the outstanding plant diversity in rainforest is a major challenge because of their elusiveness. This is crucial to understand the role of these herbivores in the functioning of the rainforest ecosystems. We tested a non-invasive approach based on the high-throughput sequencing of environmental samples using small plant plastid sequences (the trnL P6 loop) and ribosomal ITS1 primers, referred to as DNA metabarcoding, to investigate the diet of the largest neotropical herbivore, the lowland tapir. Sequencing was performed on plant DNA extracted from tapir faeces collected at the Nouragues station, a protected area of French Guiana. In spite of a limited sampling, our approach reliably provided information about the lowland tapir's diet at this site. Indeed, 95.1% and 74.4% of the plant families and genera identified thanks to the trnL P6 loop, respectively, matched with taxa already known to be consumed by tapirs. With this approach we were able to show that two families and eight new genera are also consumed by the lowland tapir. The taxonomic resolution of this method is limited to the plant family and genera. Complementary barcodes, such as a small portion of ITS1, can be used to efficiently narrow identifications down to the species in some problematic families. We will discuss the remaining limitations of this approach and how useful it is at this stage to unravel the diet of elusive rainforest herbivores and better understand their role as engineers of the ecosystem. PMID:23560107

TAPIR--Finnish national geochemical baseline database.

PubMed

Jarva, Jaana; Tarvainen, Timo; Reinikainen, Jussi; Eklund, Mikael

2010-09-15

In Finland, a Government Decree on the Assessment of Soil Contamination and Remediation Needs has generated a need for reliable and readily accessible data on geochemical baseline concentrations in Finnish soils. According to the Decree, baseline concentrations, referring both to the natural geological background concentrations and the diffuse anthropogenic input of substances, shall be taken into account in the soil contamination assessment process. This baseline information is provided in a national geochemical baseline database, TAPIR, that is publicly available via the Internet. Geochemical provinces with elevated baseline concentrations were delineated to provide regional geochemical baseline values. The nationwide geochemical datasets were used to divide Finland into geochemical provinces. Several metals (Co, Cr, Cu, Ni, V, and Zn) showed anomalous concentrations in seven regions that were defined as metal provinces. Arsenic did not follow a similar distribution to any other elements, and four arsenic provinces were separately determined. Nationwide geochemical datasets were not available for some other important elements such as Cd and Pb. Although these elements are included in the TAPIR system, their distribution does not necessarily follow the ones pre-defined for metal and arsenic provinces. Regional geochemical baseline values, presented as upper limit of geochemical variation within the region, can be used as trigger values to assess potential soil contamination. Baseline values have also been used to determine upper and lower guideline values that must be taken into account as a tool in basic risk assessment. If regional geochemical baseline values are available, the national guideline values prescribed in the Decree based on ecological risks can be modified accordingly. The national geochemical baseline database provides scientifically sound, easily accessible and generally accepted information on the baseline values, and it can be used in various

Development and characterization of a TAPIR-like mouse monoclonal antibody to amyloid-beta.

PubMed

Wang, Jun; Hara, Hideo; Makifuchi, Takao; Tabira, Takeshi

2008-06-01

Tissue amyloid plaque immuno-reactive (TAPIR) antibody was better related to the effect of immunotherapy in Alzheimer's disease (AD) than ELISA antibody. Here we used a hybridoma technique to develop a TAPIR-like anti-human amyloid-beta (Abeta) mouse monoclonal antibody. The obtained monoclonal antibody, 3.4A10, was an IgG2b isotype and recognized N-terminal portion of Abeta1-42 without binding denatured or native amyloid-beta protein precursor. It had higher affinity to Abeta1-42 than to Abeta1-40 by Biacore affinity analysis and stained preferably the peripheral part of senile plaques and recognized the plaque core less than 4G8. It inhibited the Abeta1-42 fibril formation as well as degraded pre-aggregated Abeta1-42 peptide in a thioflavin T fluorescence spectrophotometry assay. The in vivo studies showed that 3.4A10 treatment decreased amyloid burden compared to the control group and significantly reduced Abeta42 levels rather than Abeta40 levels in brain lysates as well as the Abeta*56 oligomer (12mer) in TBS fraction of the brain lysates. 3.4A10 entered brain and decorated some plaques, which is surrounded by more Iba1-positive microglia. 3.4A10 therapy did not induce lymphocytic infiltration and obvious increase in microhemorrhage. We conclude that 3.4A10 is a TAPIR-like anti-human amyloid monoclonal antibody, and has a potential of therapeutic application for AD.

Zygomycetes From Herbivore Dung in the Ecological Reserve of Dois IrmÃOs, Northeast Brazil

PubMed Central

de Azevedo Santiago, André Luiz Cabral Monteiro; Botelho Trufem, Sandra Farto; Malosso, Elaine; dos Santos, Paulo Jorge Parreira; de Queiroz Cavalcanti, Maria Auxiliadora

2011-01-01

Thirty-eight taxa of Zygomycetes distributed in 15 genera were recorded from tapir (Tapirus terrestris), camel (Camelus bactrianus), horse (Equus caballus), deer (Cervus elaphus), agouti (Dasyprocta aguti), donkey (Equus asinus), llama (Llama glama) and waterbuck (Kobus ellipsiprymnus) dung collected at the Reserva Ecológica de Dois Irmãos located in Recife, State of Pernambuco, Northeast Brazil. The samples were collected on a monthly basis from June 2005 to May 2006, taken to the laboratory and incubated in moist chambers. Higher number of taxa was observed in the excrements of tapir, followed by deer and donkey. The highest number of species was detected for Mucor, followed by Pilobolus. Statistical analyses showed significant differences in richness of Zygomycetes taxa between the herbivore dung types. Differences of species composition, however, were weak. Seasonality influenced the Zygomycetes species composition but not its richness. Variations in taxa composition between ruminants and non-ruminants dung were non significant. PMID:24031609

Zygomycetes From Herbivore Dung in the Ecological Reserve of Dois IrmÃOs, Northeast Brazil.

PubMed

de Azevedo Santiago, André Luiz Cabral Monteiro; Botelho Trufem, Sandra Farto; Malosso, Elaine; Dos Santos, Paulo Jorge Parreira; de Queiroz Cavalcanti, Maria Auxiliadora

2011-01-01

Thirty-eight taxa of Zygomycetes distributed in 15 genera were recorded from tapir (Tapirus terrestris), camel (Camelus bactrianus), horse (Equus caballus), deer (Cervus elaphus), agouti (Dasyprocta aguti), donkey (Equus asinus), llama (Llama glama) and waterbuck (Kobus ellipsiprymnus) dung collected at the Reserva Ecológica de Dois Irmãos located in Recife, State of Pernambuco, Northeast Brazil. The samples were collected on a monthly basis from June 2005 to May 2006, taken to the laboratory and incubated in moist chambers. Higher number of taxa was observed in the excrements of tapir, followed by deer and donkey. The highest number of species was detected for Mucor, followed by Pilobolus. Statistical analyses showed significant differences in richness of Zygomycetes taxa between the herbivore dung types. Differences of species composition, however, were weak. Seasonality influenced the Zygomycetes species composition but not its richness. Variations in taxa composition between ruminants and non-ruminants dung were non significant.

Primary structure of pancreatic polypeptide from four species of Perissodactyla (Przewalski's horse, zebra, rhino, tapir).

PubMed

Henry, J S; Lance, V A; Conlon, J M

1991-12-01

Pancreatic polypeptide (PP) has been purified from extracts of the pancreas of four species of odd-toed ungulates (Perissodactyla): Przewalski's horse, mountain zebra, white rhinoceros, and mountain tapir. The amino acid sequence of Przewalski's horse pancreatic polypeptide was established as Ala-Pro-Met-Glu-Pro-Val-Tyr-Pro-Gly-Asp10-Asn- Ala-Thr-Pro-Glu-Gln-Met-Ala-Gln-Tyr20-Ala-Ala-Glu-Leu-Arg-Arg-Tyr- Ile-Asn-Met30 - Leu-Thr-Arg-Pro-Arg-Tyr.NH2. Zebra PP was identical to Przewalski's horse PP, rhinoceros PP contained three substitutions relative to the horse (Ser for Ala1, Leu for Met3, and Glu for Gln16), and tapir PP contained one substitution relative to the horse (Leu for Met3). On the basis of morphological characteristics and the fossil record, the rhinocerotids are classified with the tapirids in the suborder Ceratomorpha, whereas the horse and zebra belong to a separate suborder, Hippomorpha. On the basis of structural similarity of the PP molecules, however, it would appear that the tapir is more closely related to the horse than to the rhinoceros. These observations provide a further example of the need for extreme caution when inferring taxonomic or phylogenetic relationships between species from the structures of homologous peptides.

Botany, genetics and ethnobotany: a crossed investigation on the elusive tapir's diet in French Guiana.

PubMed

Hibert, Fabrice; Sabatier, Daniel; Andrivot, Judith; Scotti-Saintagne, Caroline; Gonzalez, Sophie; Prévost, Marie-Françoise; Grenand, Pierre; Chave, Jérome; Caron, Henri; Richard-Hansen, Cécile

2011-01-01

While the populations of large herbivores are being depleted in many tropical rainforests, the importance of their trophic role in the ecological functioning and biodiversity of these ecosystems is still not well evaluated. This is due to the outstanding plant diversity that they feed upon and the inherent difficulties involved in observing their elusive behaviour. Classically, the diet of elusive tropical herbivores is studied through the observation of browsing signs and macroscopic analysis of faeces or stomach contents. In this study, we illustrate that the original coupling of classic methods with genetic and ethnobotanical approaches yields information both about the diet diversity, the foraging modalities and the potential impact on vegetation of the largest terrestrial mammal of Amazonia, the lowland tapir. The study was conducted in the Guianan shield, where the ecology of tapirs has been less investigated. We identified 92 new species, 51 new genera and 13 new families of plants eaten by tapirs. We discuss the relative contribution of our different approaches, notably the contribution of genetic barcoding, used for the first time to investigate the diet of a large tropical mammal, and how local traditional ecological knowledge is accredited and valuable for research on the ecology of elusive animals.

Botany, Genetics and Ethnobotany: A Crossed Investigation on the Elusive Tapir's Diet in French Guiana

PubMed Central

Hibert, Fabrice; Sabatier, Daniel; Andrivot, Judith; Scotti-Saintagne, Caroline; Gonzalez, Sophie; Prévost, Marie-Françoise; Grenand, Pierre; Chave, Jérome; Caron, Henri; Richard-Hansen, Cécile

2011-01-01

While the populations of large herbivores are being depleted in many tropical rainforests, the importance of their trophic role in the ecological functioning and biodiversity of these ecosystems is still not well evaluated. This is due to the outstanding plant diversity that they feed upon and the inherent difficulties involved in observing their elusive behaviour. Classically, the diet of elusive tropical herbivores is studied through the observation of browsing signs and macroscopic analysis of faeces or stomach contents. In this study, we illustrate that the original coupling of classic methods with genetic and ethnobotanical approaches yields information both about the diet diversity, the foraging modalities and the potential impact on vegetation of the largest terrestrial mammal of Amazonia, the lowland tapir. The study was conducted in the Guianan shield, where the ecology of tapirs has been less investigated. We identified 92 new species, 51 new genera and 13 new families of plants eaten by tapirs. We discuss the relative contribution of our different approaches, notably the contribution of genetic barcoding, used for the first time to investigate the diet of a large tropical mammal, and how local traditional ecological knowledge is accredited and valuable for research on the ecology of elusive animals. PMID:21991372

Bistatic Soundings with the HF GPR TAPIR in the Egyptian White Desert

NASA Astrophysics Data System (ADS)

Ciarletti, V.; Le Gall, A.; Berthelier, J. J.; Corbel, C.; Dolon, F.; Ney, R.

2006-03-01

The TAPIR HF GPR has been initially developed to perform deep soundings on Mars in the frame of the NETLANDER mission. In November 2006, an updated version of the instrument working either in monostatic or in bistatic mode was tested in the Egytian White Desert. Preliminary results are presented.

Ecological and geographical analysis of the distribution of the mountain tapir (Tapirus pinchaque) in Ecuador: importance of protected areas in future scenarios of global warming.

PubMed

Ortega-Andrade, H Mauricio; Prieto-Torres, David A; Gómez-Lora, Ignacio; Lizcano, Diego J

2015-01-01

In Ecuador, Tapirus pinchaque is considered to be critically endangered. Although the species has been registered in several localities, its geographic distribution remains unclear, and the effects of climate change and current land uses on this species are largely unknown. We modeled the ecological niche of T. pinchaque using MaxEnt, in order to assess its potential adaptation to present and future climate change scenarios. We evaluated the effects of habitat loss due by current land use, the ecosystem availability and importance of Ecuadorian System of Protected Areas into the models. The model of environmental suitability estimated an extent of occurrence for species of 21,729 km2 in all of Ecuador, mainly occurring along the corridor of the eastern Ecuadorian Andes. A total of 10 Andean ecosystems encompassed ~98% of the area defined by the model, with herbaceous paramo, northeastern Andean montane evergreen forest and northeastern Andes upper montane evergreen forest being the most representative. When considering the effect of habitat loss, a significant reduction in model area (~17%) occurred, and the effect of climate change represented a net reduction up to 37.86%. However, the synergistic effect of both climate change and habitat loss, given current land use practices, could represent a greater risk in the short-term, leading to a net reduction of 19.90 to 44.65% in T. pinchaque's potential distribution. Even under such a scenarios, several Protected Areas harbor a portion (~36 to 48%) of the potential distribution defined by the models. However, the central and southern populations are highly threatened by habitat loss and climate change. Based on these results and due to the restricted home range of T. pinchaque, its preference for upland forests and paramos, and its small estimated population size in the Andes, we suggest to maintaining its current status as Critically Endangered in Ecuador.

Ecological and Geographical Analysis of the Distribution of the Mountain Tapir (Tapirus pinchaque) in Ecuador: Importance of Protected Areas in Future Scenarios of Global Warming

PubMed Central

Ortega-Andrade, H. Mauricio; Prieto-Torres, David A.; Gómez-Lora, Ignacio; Lizcano, Diego J.

2015-01-01

In Ecuador, Tapirus pinchaque is considered to be critically endangered. Although the species has been registered in several localities, its geographic distribution remains unclear, and the effects of climate change and current land uses on this species are largely unknown. We modeled the ecological niche of T. pinchaque using MaxEnt, in order to assess its potential adaptation to present and future climate change scenarios. We evaluated the effects of habitat loss due by current land use, the ecosystem availability and importance of Ecuadorian System of Protected Areas into the models. The model of environmental suitability estimated an extent of occurrence for species of 21,729 km2 in all of Ecuador, mainly occurring along the corridor of the eastern Ecuadorian Andes. A total of 10 Andean ecosystems encompassed ~98% of the area defined by the model, with herbaceous paramo, northeastern Andean montane evergreen forest and northeastern Andes upper montane evergreen forest being the most representative. When considering the effect of habitat loss, a significant reduction in model area (~17%) occurred, and the effect of climate change represented a net reduction up to 37.86%. However, the synergistic effect of both climate change and habitat loss, given current land use practices, could represent a greater risk in the short-term, leading to a net reduction of 19.90 to 44.65% in T. pinchaque’s potential distribution. Even under such a scenarios, several Protected Areas harbor a portion (~36 to 48%) of the potential distribution defined by the models. However, the central and southern populations are highly threatened by habitat loss and climate change. Based on these results and due to the restricted home range of T. pinchaque, its preference for upland forests and paramos, and its small estimated population size in the Andes, we suggest to maintaining its current status as Critically Endangered in Ecuador. PMID:25798851

Fluorouracil as a treatment for corneal papilloma in a Malayan tapir.

PubMed

Karpinski, Lorraine G; Miller, Christine L

2002-09-01

A 26-year-old, wild caught, male Malayan tapir at the Miami Metrozoo with bilateral corneal papillomas was serially immobilized and given subconjunctival injections of fluorouracil. Over the course of 17 weeks five bilateral injections of 25 mg fluorouracil were given. This treatment caused regression of the corneal lesions as evidenced by decreased lesion diameter, decreased corneal vascularity, increased corneal clarity, and improved visual function. No adverse drug effects were observed.

An Estimation Of The Geoelectric Features Of Planetary Shallow Subsurfaces With TAPIR Antennae

NASA Astrophysics Data System (ADS)

Le Gall, A.; Reineix, A.; Ciarletti, V.; Jean-Jacques, B.; Ney, R.; Dolon, F.; Corbel, C.

2005-12-01

Exploring the interior of Mars and searching for water reservoirs, either in the form of ice or of liquid water, was one of the main scientific objectives of the NETLANDER project. In that frame, the CETP (Centre d'Etude des Environnements Terrestre et Planetaires) has developed an imaging ground penetrating radar (GPR), called TAPIR (Terrestrial And Planetary Investigation by Radar). Operating from a fixed position and at low frequencies (from 2 to 4MHz), this instrument allows to retrieve not only the distance but also the inclination of deep subsurface reflectors by measuring the two horizontal electrical components and the three magnetic components of the reflected waves. In 2004, ground tests have been successfully carried out on the Antarctic Continent; the bedrock, lying under a thick layer of ice (until 1200m), was detected and part of its relief was revealed. Yet, knowing the electric parameters of the close subsurface is required to correctly process the measured electric and magnetic components of the echoes and deduce their propagation vector. In addition, these electric parameters can bring a very interesting piece of information on the nature of the material in the shallow underground. We have therefore looked for a possible method (appropriate for a planetary mission) to evaluate them using a special mode of operation of the radar. This method relies on the fact that the electrical characteristics of the transmitting electric antennas (current along the antenna, driving-point impedance.) depend on the nature of the ground on which the radar is lying. If this dependency is significant enough, geological parameters of the subsurface can be deduced from the analysis of specific measurements. We have thus performed a detailed experimental and theoretical study of the TAPIR resistively loaded electrical dipoles to get a precise understanding of the radar transmission and assess the role of the electric parameters of the underground. In this poster, we

Imaging the Antarctic Ice Sheet Subsurface with the HF GPR TAPIR

NASA Astrophysics Data System (ADS)

Le Gall, A.; Ciarletti, V.; Berthelier, J.; Reineix, A.; Ney, R.; Bonaimé, S.; Corbel, C.

2006-12-01

An HF impulse polarimetric Ground Penetrating Radar (GPR) operating at very low frequencies (ranging from ~2 to 8MHz) has been developed in the frame of the NetLander mission. This instrument, named TAPIR (Terrestrial And Planetary Investigation by Radar), was designed to probe the Martian subsurface down to kilometric depth and search for potential water reservoirs. Although the NetLander mission was cancelled in 2003, the interest on the exploration of Martian subsurface was recently enhanced by the promising observations of the Mars Advanced Radar for Subsurface and Ionospheric Sounding (MARSIS) on board of the ESA Mars Express orbiter. In particular, MARSIS detected the base of the North Polar Layered Deposits, penetrating up to ~1.8km the ice-rich upper layer of the underground. Such results suggest that TAPIR, which operates in the same frequency range as MARSIS and can performed a higher number of coherent integrations, is able to reach deeper structures. Yet, in contrast with classical GPRs, TAPIR can not move onto the surface and thus won't provide 2D or 3D scan of the subsurface. To retrieve, in spite of this NetLander restraint, the 3D distribution of the reflecting facets of the underground, the instrument was equipped with two electrical dipoles and a rotating magnetic sensor. These antennas allow to derive, from the measured values of 5 components of the wave field, the direction of arrival of the reflected waves hence the inclination of the buried reflectors. The first validation of this innovative concept was carried out during the RANETA (RAdar of NEtlander in Terre Adélie) campaign organized by the Institute Paul-Emile Victor in January-February 2004. This campaign took place on the Antarctic ice sheet close to the French-Italian Cap Prudhomme station. 8 soundings of the ice shelf were performed on various sites corresponding to different altitudes above the sea level (ranging from ~285m to ~1100m). We shall provide a detailed description of the

Blue Tigers, Black Tapirs, & the Pied Raven of the Faroe Islands: Teaching Genetic Drift Using Real-Life Animal Examples

ERIC Educational Resources Information Center

Robischon, Marcel

2015-01-01

Genetic drift is a concept of population genetics that is central to understanding evolutionary processes and aspects of conservation biology. It is frequently taught using rather abstract representations. I introduce three real-life zoological examples, based on historical and recent color morphs of tigers, tapirs, and ravens, that can complement…

Acoustic and foraging behavior of a Baird's beaked whale, Berardius bairdii, exposed to simulated sonar

PubMed Central

Stimpert, A. K.; DeRuiter, S. L.; Southall, B. L.; Moretti, D. J.; Falcone, E. A.; Goldbogen, J. A.; Friedlaender, A.; Schorr, G. S.; Calambokidis, J.

2014-01-01

Beaked whales are hypothesized to be particularly sensitive to anthropogenic noise, based on previous strandings and limited experimental and observational data. However, few species have been studied in detail. We describe the underwater behavior of a Baird's beaked whale (Berardius bairdii) from the first deployment of a multi-sensor acoustic tag on this species. The animal exhibited shallow (23 ± 15 m max depth), intermediate (324 ± 49 m), and deep (1138 ± 243 m) dives. Echolocation clicks were produced with a mean inter-click interval of approximately 300 ms and peak frequency of 25 kHz. Two deep dives included presumed foraging behavior, with echolocation pulsed sounds (presumed prey capture attempts) associated with increased maneuvering, and sustained inverted swimming during the bottom phase of the dive. A controlled exposure to simulated mid-frequency active sonar (3.5–4 kHz) was conducted 4 hours after tag deployment, and within 3 minutes of exposure onset, the tagged whale increased swim speed and body movement, and continued to show unusual dive behavior for each of its next three dives, one of each type. These are the first data on the acoustic foraging behavior in this largest beaked whale species, and the first experimental demonstration of a response to simulated sonar. PMID:25391309

Primary amebic meningoencephalitis due to Naegleria fowleri in a South American tapir.

PubMed

Lozano-Alarcón, F; Bradley, G A; Houser, B S; Visvesvara, G S

1997-05-01

Naegleria fowleri, Acanthamoeba spp., and Balamuthia mandrillaris are known to cause fatal central nervous system (CNS) disease in human beings. N. fowleri causes acute, fulminating primary amebic meningoencephalitis (PAM), which generally leads to death within 10 days. Acanthamoeba spp. and B. mandrillaris cause chronic granulomatous amebic encephalitis, which may last for 8 weeks. Acanthamoeba spp. and B. mandrillaris also cause CNS disease in animals. N. fowleri, however, has been described only in human beings. This report is the first of PAM in an animal, a South American tapir. Dry cough, lethargy, and coma developed in the animal, and its condition progressed to death. At necropsy, lesions were seen in the cerebrum, cerebellum, and lungs. The CNS had severe, suppurative meningoencephalitis with many neutrophils, fibrin, plasma cells, and amebas. Amebas were 6.5 microns to 9 microns in diameter and had a nucleus containing a large nucleolus. Amebas in the sections reacted with a monoclonal antibody specific for N. fowleri in the immunofluorescent assay and appeared bright green.

Distributional patterns of living ungulates (Mammalia: Cetartiodactyla and Perissodactyla) of the Neotropical region, the South American transition zone and Andean region

NASA Astrophysics Data System (ADS)

Absolon, Bruno Araujo; Gallo, Valéria; Avilla, Leonardo S.

2016-11-01

To recognize the distributional patterns of living ungulates in the Neotropical region, the South American transition zone, and Andean region using the panbiogeographical method of track analysis, and to attempt to correlate these patterns with geological history. The distribution of 24 species of living ungulates (in the families Camelidae, Cervidae, Tapiridae and Tayassuidae) was studied by the panbiogeographical method of track analysis. It was performed using distributional data acquired from literature and databases of scientific institutions. Individual tracks were obtained for each species by plotting locality records on maps and connecting them by minimum-spanning trees. Generalized tracks were determined from the spatial overlap between individual tracks, indicating a common history. The intersection between generalized tracks defined a biogeographic node, implying that these locations are biogeographic composites resulting from different ancestral biotas coming into spatial contact, possibly at different geologic times. The superposition of the 24 individual tracks resulted in five generalized tracks (GTs): GT1, Mesoamerican/Choco (composed of Mazama pandora, Mazama temama, Odoicoileus virginianus and Tapirus bairdii); GT2, Northern Andes (Mazama rufina, Pudu mephistophiles and Tapirus pinchaque); GT3, Central Andes (Hippocamelus antisensis, Lama guanicoe, Mazama chunyi and Vicugna vicugna); GT4, Chilean Patagonia (Hippocamelus bisulcus and Pudu puda); and GT5, Chaco/Central west Brazil (Blastocerus dichotomus, Catagonus wagneri and Ozotocerus bezoarticus). The biogeographic node was found in the Northwestern Colombia. The geological events such as tectonism and volcanism that occurred through the Neogene and mainly in the Pleistocene caused fragmentation, diversification and endemism of biota. The biogeographic node in Colombia occurred within a zone of convergence. This node emphasized the complexity of the area and it contains biotic elements with

Purification and characterization of insulin and the C-peptide of proinsulin from Przewalski's horse, zebra, rhino, and tapir (Perissodactyla).

PubMed

Henry, J S; Lance, V A; Conlon, J M

1993-02-01

Within the order Perissodactyla, the primary structure of insulin has been strongly conserved. Insulin from Przewalski's horse and the mountain zebra (suborder Hippomorpha) is the same as that from the domestic horse and differs from insulin from the white rhinoceros and mountain tapir (suborder Ceratomorpha) by a single substitution (Gly-->Ser) at position 9 in the A-chain. A second molecular form of Przewalski's horse insulin isolated in this study was shown to represent the gamma-ethyl ester of the Glu17 residue of the A-chain. This component was probably formed during the extraction of the pancreas with acidified ethanol. The amino acid sequence of the C-peptide of proinsulin has been less well conserved. Zebra C-peptide comprises 31 amino acid residues and differs from Przewalski's horse and domestic horse C-peptide by one substitution (Gln30-->Pro). Rhino C-peptide was isolated only in a truncated form corresponding to residues (1-23) of intact C-peptide. Its amino acid sequence contains three substitutions compared with the corresponding region of horse C-peptide. It is postulated that the substitution (Pro23-->Thr) renders rhino C-peptide more liable to proteolytic cleavage by a chymotrypsin-like enzyme than horse C-peptide. C-peptide could not be identified in the extract of tapir pancreas, suggesting that proteolytic degradation may have been more extensive than in the rhino. In contrast to the ox and pig (order Artiodactyla), there was no evidence for the expression of more than one proinsulin gene in the species of Perissodactyla examined.

Complex postglacial recolonization inferred from population genetic structure of mottled sculpin Cottus bairdii in tributaries of eastern Lake Michigan, U.S.A.

PubMed

Homola, J J; Ruetz, C R; Kohler, S L; Thum, R A

2016-11-01

This study used analyses of the genetic structure of a non-game fish species, the mottled sculpin Cottus bairdii to hypothesize probable recolonization routes used by cottids and possibly other Laurentian Great Lakes fishes following glacial recession. Based on samples from 16 small streams in five major Lake Michigan, U.S.A., tributary basins, significant interpopulation differentiation was documented (overall F ST = 0·235). Differentiation was complex, however, with unexpectedly high genetic similarity among basins as well as occasionally strong differentiation within basins, despite relatively close geographic proximity of populations. Genetic dissimilarities were identified between eastern and western populations within river basins, with similarities existing between eastern and western populations across basins. Given such patterns, recolonization is hypothesized to have occurred on three occasions from more than one glacial refugium, with a secondary vicariant event resulting from reduction in the water level of ancestral Lake Michigan. By studying the phylogeography of a small, non-game fish species, this study provides insight into recolonization dynamics of the region that could be difficult to infer from game species that are often broadly dispersed by humans. © 2016 The Fisheries Society of the British Isles.

Use of filter papers to determine seroprevalence of Toxoplasma gondii among hunted ungulates in remote Peruvian Amazon.

PubMed

Aston, Emily J; Mayor, Pedro; Bowman, Dwight D; Mohammed, Hussni O; Liotta, Janice L; Kwok, Oliver; Dubey, J P

2014-04-01

Toxoplasmosis is a zoonosis caused by the protozoan Toxoplasma gondii, and it is found worldwide. To determine whether ungulates are reservoirs of T. gondii in an isolated and remote region of the northeastern Peruvian Amazon, antibodies to T. gondii were determined in 5 species of ungulates by the modified agglutination test (MAT). These animals were hunted by subsistence hunters along the Yavarí-Mirín River, in the northeastern Peruvian Amazon. Blood samples were collected by hunters on filter papers. For determination of T. gondii antibodies, blood was eluted from filter papers, and a titer of 1:25 was considered indicative of exposure to T. gondii. Antibodies to T. gondii were found in 26 (31.0%) peccaries (Pecari tajacu, Tayassu pecari), six (17.1%) brocket deer (Mazama americana, Mazama gouazoubira), and four (40.0%) lowland tapir (Tapirus terrestris). We also introduced a modification to the MAT protocol that allows the extraction of fluid samples from several types of laboratory-grade filter paper, thus enabling researchers to easily adapt their approaches to the materials presented to them.

Use of filter papers to determine seroprevalence of Toxoplasma gondii among hunted ungulates in remote Peruvian Amazon☆

PubMed Central

Aston, Emily J.; Mayor, Pedro; Bowman, Dwight D.; Mohammed, Hussni O.; Liotta, Janice L.; Kwok, Oliver; Dubey, J.P.

2013-01-01

Toxoplasmosis is a zoonosis caused by the protozoan Toxoplasma gondii, and it is found worldwide. To determine whether ungulates are reservoirs of T. gondii in an isolated and remote region of the northeastern Peruvian Amazon, antibodies to T. gondii were determined in 5 species of ungulates by the modified agglutination test (MAT). These animals were hunted by subsistence hunters along the Yavarí-Mirín River, in the northeastern Peruvian Amazon. Blood samples were collected by hunters on filter papers. For determination of T. gondii antibodies, blood was eluted from filter papers, and a titer of 1:25 was considered indicative of exposure to T. gondii. Antibodies to T. gondii were found in 26 (31.0%) peccaries (Pecari tajacu, Tayassu pecari), six (17.1%) brocket deer (Mazama americana, Mazama gouazoubira), and four (40.0%) lowland tapir (Tapirus terrestris). We also introduced a modification to the MAT protocol that allows the extraction of fluid samples from several types of laboratory-grade filter paper, thus enabling researchers to easily adapt their approaches to the materials presented to them. PMID:24918073

A Comparison of Zoo Animal Behavior in the Presence of Familiar and Unfamiliar People.

PubMed

Martin, Rosemary Anne; Melfi, Vicky

2016-01-01

As recorded in domestic nonhuman animals, regular interactions between animals in zoos and keepers and the resulting relationship formed (human-animal relationship [HAR]) are likely to influence the animals' behaviors with associated welfare consequences. HAR formation requires that zoo animals distinguish between familiar and unfamiliar people. This ability was tested by comparing zoo animal behavioral responses to familiar (routine) keepers and unfamiliar keepers (participants in the "Keeper for the Day" program). Study subjects included 1 African elephant (Loxodonta Africana), 3 Rothschild's giraffes (Giraffa camelopardalis rothschildi), 2 Brazilian tapir (Tapirus terrestris), and 2 slender-tailed meerkats (Suricata suricatta). Different behavior was evident and observed as decreased avoidance behavior toward familiar keepers (t7 = 6.00, p <  .001). This finding suggests the zoo animals have a lower level of fear toward familiar keepers. Keeper familiarity did not significantly affect any other behavioral measure. This finding suggests that in the current study, unfamiliar keeper presence did not appear to have detrimental effects. Furthermore, unfamiliar keeper-animal interactions could provide an increased number of positive human-animal interactions and potentially enhance animal welfare.

Taxonomy of the common dolphins of the Eastern Pacific Ocean

USGS Publications Warehouse

Banks, R.C.; Brownell, R.

1969-01-01

Delphinus bairdii Dall is a species of dolphin distinct from D. delphis Linnaeus, with which it has usually been synonymized. D. bairdii has a longer rostrum relative to the zygomatic width of the skull; the ratio of these measurements falls at 1.55 or above for bairdii and 1.53 and below for delphis. In the eastern Pacific Ocean, D. bairdii is found in the Gulf of California and along the west coast of Baja California, Mexico; D. delphis is presently found in the waters off California. Until approximately the beginning of the present century, bairdii occurred farther north in the eastern Pacific Ocean, at least to the Monterey Bay area of California. Restriction of bairdii to more southerly waters, probably as an indirect result of a change in water temperature, may have permitted delphis to move into inshore Californian waters. The Pacific population of D. delphis has a somewhat shorter rostrum than the Atlantic population, and is perhaps subspecifically different. A thorough analysis of the entire genus Delphinus is needed before the relationship of all the populations can be understood and names properly applied.

An estimation of the electrical characteristics of planetary shallow subsurfaces with TAPIR antennas

NASA Astrophysics Data System (ADS)

Le Gall, A.; Reineix, A.; Ciarletti, V.; Berthelier, J. J.; Ney, R.; Dolon, F.; Corbel, C.

2006-06-01

In the frame of the NETLANDER program, we have developed the Terrestrial And Planetary Investigation by Radar (TAPIR) imaging ground-penetrating radar to explore the Martian subsurface at kilometric depths and search for potential water reservoirs. This instrument which is to operate from a fixed lander is based on a new concept which allows one to image the various underground reflectors by determining the direction of propagation of the reflected waves. The electrical parameters of the shallow subsurface (permittivity and conductivity) need to be known to correctly determine the propagation vector. In addition, these electrical parameters can bring valuable information on the nature of the materials close to the surface. The electric antennas of the radar are 35 m long resistively loaded monopoles that are laid on the ground. Their impedance, measured during a dedicated mode of operation of the radar, depends on the electrical parameters of soil and is used to infer the permittivity and conductivity of the upper layer of the subsurface. This paper presents an experimental and theoretical study of the antenna impedance and shows that the frequency profile of the antenna complex impedance can be used to retrieve the geoelectrical characteristics of the soil. Comparisons between a numerical modeling and in situ measurements have been successfully carried over various soils, showing a very good agreement.

Effects of orally administered chemotherapeutics (quinine, salinomycin) against Henneguya sp. Thelohán, 1892 (Myxozoa: Myxobolidae), a gill parasite in the tapir fish Gnathonemus petersii Günther, 1862 (Teleostei).

PubMed

Dohle, Angelika; Schmahl, Günter; Raether, Wolfgang; Schmidt, Hartmut; Ritter, Günter

2002-09-01

When given orally, quinine or salinomycin cause irreversible damage to the plasmodial developmental stages of Henneguya sp., a gill parasite in the tapir fish Gnathonemus petersii. Naturally infected tapir fish measured 75-169 mm in total length and their total weight ranged over 4.3-11.7 g. The fish bore 7-77 plasmodia in their gill arches. Medicinal food containing either quinine (5 g/1000 g food) or salinomycin (0.075 g/1000 g food) was given once a day to naturally infected fish in a food chain via water fleas ( Daphnia spp) for a period of 3, 6, or 9 days. From the monitored feeding of the tapir fish and weight determinations of the water fleas, it was calculated that gross uptake was 18.5 micro g/kg body weight fish daily for pure salinomycin and was 1.25 mg/kg body weight daily for quinine. After the end of the experiments, the fish were sacrificed and the plasmodia were carefully prepared from the gill arches and processed for transmission electron microscopy. As seen by ultrastructure investigations, for both substances the grade of damage in the parasites correlated positively with the period of application. When quinine was given for a 3-day period, the trophozoite ecto- and endoplasm exerted numerous vacuoles, caused by the drug, and the presporogonous and the pansporoblastic stages were malformed. Following a 6-day period, numerous abortive polar capsules were found in the trophozoite cytoplasm. To a large extent, the limiting membranes of the polaroblasts and valvogenic cells were destroyed. In addition, deep clefts between the polaroblasts, the valvogenic cells and between the two sporoblasts were observed. Following a 9-day treatment, all damage increased and, in addition, generative cells and two-cell stages were no longer detectable. As a first sign for the effects of salinomycin, following a 3-day treatment, a shrinking of the whole plasmodia occurred and the sutures in the pansporoblasts were enlarged. The polar capsules were malformed and the

Investigation of tick-borne bacteria (Rickettsia spp., Anaplasma spp., Ehrlichia spp. and Borrelia spp.) in ticks collected from Andean tapirs, cattle and vegetation from a protected area in Ecuador.

PubMed

Pesquera, Cristina; Portillo, Aránzazu; Palomar, Ana M; Oteo, José A

2015-01-24

Ixodid ticks play an important role in the transmission and ecology of infectious diseases. Information about the circulation of tick-borne bacteria in ticks is lacking in Ecuador. Our aims were to investigate the tick species that parasitize Andean tapirs and cattle, and those present in the vegetation from the buffer zone of the Antisana Ecological Reserve and Cayambe-Coca National Park (Ecuador), and to investigate the presence of tick-borne bacteria. Tick species were identified based on morphologic and genetic criteria. Detection of tick-borne bacteria belonging to Rickettsia, Anaplasma, Ehrlichia and Borrelia genera was performed by PCRs. Our ticks included 91 Amblyomma multipunctum, 4 Amblyomma spp., 60 Rhipicephalus microplus, 5 Ixodes spp. and 1 Ixodes boliviensis. A potential Candidatus Rickettsia species closest to Rickettsia monacensis and Rickettsia tamurae (designated Rickettsia sp. 12G1) was detected in 3 R. microplus (3/57, 5.3%). In addition, Anaplasma spp., assigned at least to Anaplasma phagocytophilum (or closely related genotypes) and Anaplasma marginale, were found in 2 A. multipunctum (2/87, 2.3%) and 13 R. microplus (13/57, 22.8%). This is the first description of Rickettsia sp. in ticks from Ecuador, and the analyses of sequences suggest the presence of a potential novel Rickettsia species. Ecuadorian ticks from Andear tapirs, cattle and vegetation belonging to Amblyomma and Rhipicephalus genera were infected with Anaplasmataceae. Ehrlichia spp. and Borrelia burgdorferi sensu lato were not found in any ticks.

9 CFR 93.807 - Other importations.

Code of Federal Regulations, 2013 CFR

2013-01-01

... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.807 Other importations. (a) Elephants, hippopotami, rhinoceroses, and tapirs are exempt from the regulations in this part... or bedding materials with any elephant, hippopotamus, rhinoceros, or tapir imported into Canada...

9 CFR 93.807 - Other importations.

Code of Federal Regulations, 2010 CFR

2010-01-01

... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.807 Other importations. (a) Elephants, hippopotami, rhinoceroses, and tapirs are exempt from the regulations in this part... or bedding materials with any elephant, hippopotamus, rhinoceros, or tapir imported into Canada...

9 CFR 93.807 - Other importations.

Code of Federal Regulations, 2014 CFR

2014-01-01

... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.807 Other importations. (a) Elephants, hippopotami, rhinoceroses, and tapirs are exempt from the regulations in this part... or bedding materials with any elephant, hippopotamus, rhinoceros, or tapir imported into Canada...

9 CFR 93.807 - Other importations.

Code of Federal Regulations, 2012 CFR

2012-01-01

... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.807 Other importations. (a) Elephants, hippopotami, rhinoceroses, and tapirs are exempt from the regulations in this part... or bedding materials with any elephant, hippopotamus, rhinoceros, or tapir imported into Canada...

9 CFR 93.807 - Other importations.

Code of Federal Regulations, 2011 CFR

2011-01-01

... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.807 Other importations. (a) Elephants, hippopotami, rhinoceroses, and tapirs are exempt from the regulations in this part... or bedding materials with any elephant, hippopotamus, rhinoceros, or tapir imported into Canada...

9 CFR 93.802 - Import permit.

Code of Federal Regulations, 2010 CFR

2010-01-01

... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.802 Import permit. (a) An elephant, hippopotamus, rhinoceros, or tapir shall not be imported into the United States... export an elephant, hippopotamus, rhinoceros, or tapir to the United States; (2) The name and address of...

9 CFR 93.802 - Import permit.

Code of Federal Regulations, 2014 CFR

2014-01-01

... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.802 Import permit. (a) An elephant, hippopotamus, rhinoceros, or tapir shall not be imported into the United States... export an elephant, hippopotamus, rhinoceros, or tapir to the United States; (2) The name and address of...

9 CFR 93.802 - Import permit.

Code of Federal Regulations, 2011 CFR

2011-01-01

... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.802 Import permit. (a) An elephant, hippopotamus, rhinoceros, or tapir shall not be imported into the United States... export an elephant, hippopotamus, rhinoceros, or tapir to the United States; (2) The name and address of...

9 CFR 93.802 - Import permit.

Code of Federal Regulations, 2013 CFR

2013-01-01

... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.802 Import permit. (a) An elephant, hippopotamus, rhinoceros, or tapir shall not be imported into the United States... export an elephant, hippopotamus, rhinoceros, or tapir to the United States; (2) The name and address of...

9 CFR 93.802 - Import permit.

Code of Federal Regulations, 2012 CFR

2012-01-01

... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.802 Import permit. (a) An elephant, hippopotamus, rhinoceros, or tapir shall not be imported into the United States... export an elephant, hippopotamus, rhinoceros, or tapir to the United States; (2) The name and address of...

Interactions between terrestrial mammals and the fruits of two neotropical rainforest tree species

NASA Astrophysics Data System (ADS)

Camargo-Sanabria, Angela A.; Mendoza, Eduardo

2016-05-01

Mammalian frugivory is a distinctive biotic interaction of tropical forests; however, most efforts in the Neotropics have focused on cases of animals foraging in the forest canopy, in particular primates and bats. In contrast much less is known about this interaction when it involves fruits deposited on the forest floor and terrestrial mammals. We conducted a camera-trapping survey to analyze the characteristics of the mammalian ensembles visiting fruits of Licania platypus and Pouteria sapota deposited on the forest floor in a well preserved tropical rainforest of Mexico. Both tree species produce large fruits but contrast in their population densities and fruit chemical composition. In particular, we expected that more species of terrestrial mammals would consume P. sapota fruits due to its higher pulp:seed ratio, lower availability and greater carbohydrate content. We monitored fruits at the base of 13 trees (P. sapota, n = 4 and L. platypus, n = 9) using camera-traps. We recorded 13 mammal species from which we had evidence of 8 consuming or removing fruits. These eight species accounted for 70% of the species of mammalian frugivores active in the forest floor of our study area. The ensemble of frugivores associated with L. platypus (6 spp.) was a subset of that associated with P. sapota (8 spp). Large body-sized species such as Tapirus bairdii, Pecari tajacu and Cuniculus paca were the mammals more frequently interacting with fruits of the focal species. Our results further our understanding of the characteristics of the interaction between terrestrial mammalian frugivores and large-sized fruits, helping to gain a more balanced view of its importance across different tropical forests and providing a baseline to compare against defaunated forests.

Examination of the Triarchic Assessment Procedure for Inconsistent Responding in six non-English language samples.

PubMed

Kelley, Shannon E; van Dongen, Josanne D M; Donnellan, M Brent; Edens, John F; Eisenbarth, Hedwig; Fossati, Andrea; Howner, Katarina; Somma, Antonella; Sörman, Karolina

2018-05-01

The Triarchic Assessment Procedure for Inconsistent Responding (TAPIR; Mowle et al., 2016) was recently developed to identify inattentiveness or comprehension difficulties that may compromise the validity of responses on the Triarchic Psychopathy Measure (TriPM; Patrick, 2010). The TAPIR initially was constructed and cross-validated using exclusively English-speaking participants from the United States; however, research using the TriPM has been increasingly conducted internationally, with numerous foreign language translations of the measure emerging. The present study examined the cross-language utility of the TAPIR in German, Dutch, Swedish, and Italian translations of the TriPM using 6 archival samples of community members, university students, forensic psychiatric inpatients, forensic detainees, and adolescents residing outside the United States (combined N = 5,404). Findings suggest that the TAPIR effectively detects careless responding across these 4 translated versions of the TriPM without the need for language-specific modifications. The TAPIR total score meaningfully discriminated genuine participant responses from both fully and partially randomly generated data in every sample, and demonstrated further utility in detecting fixed "all true" or "all false" response patterns. In addition, TAPIR scores were reliably associated with inconsistent responding scores from another psychopathy inventory. Specificity for a range of tentative cut scores for assessing profile validity was modestly reduced among our samples relative to rates previously obtained with the English version of the TriPM; however, overall the TAPIR appears to demonstrate satisfactory cross-language generalizability. (PsycINFO Database Record (c) 2018 APA, all rights reserved).

Plasma antibodies to Abeta40 and Abeta42 in patients with Alzheimer's disease and normal controls.

PubMed

Xu, Wuhua; Kawarabayashi, Takeshi; Matsubara, Etsuro; Deguchi, Kentaro; Murakami, Tetsuro; Harigaya, Yasuo; Ikeda, Masaki; Amari, Masakuni; Kuwano, Ryozo; Abe, Koji; Shoji, Mikio

2008-07-11

Antibodies to amyloid beta protein (Abeta) are present naturally or after Abeta vaccine therapy in human plasma. To clarify their clinical role, we examined plasma samples from 113 patients with Alzheimer's disease (AD) and 205 normal controls using the tissue amyloid plaque immunoreactivity (TAPIR) assay. A high positive rate of TAPIR was revealed in AD (45.1%) and age-matched controls (41.2%), however, no significance was observed. No significant difference was observed in the MMS score or disease duration between TAPIR-positive and negative samples. TAPIR-positive plasma reacted with the Abeta40 monomer and dimer, and the Abeta42 monomer weakly, but not with the Abeta42 dimer. TAPIR was even detected in samples from young normal subjects and young Tg2576 transgenic mice. Although the Abeta40 level and Abeta40/42 ratio increased, and Abeta42 was significantly decreased in plasma from AD groups when compared to controls, no significant correlations were revealed between plasma Abeta levels and TAPIR grading. Thus an immune response to Abeta40 and immune tolerance to Abeta42 occurred naturally in humans without a close relationship to the Abeta burden in the brain. Clarification of the mechanism of the immune response to Abeta42 is necessary for realization of an immunotherapy for AD.

9 CFR 93.806 - Animals refused entry.

Code of Federal Regulations, 2014 CFR

2014-01-01

... FOR MEANS OF CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.806 Animals refused entry. Any elephant, hippopotamus, rhinoceros, or tapir refused entry into the...

9 CFR 93.801 - Prohibitions.

Code of Federal Regulations, 2014 CFR

2014-01-01

... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.801 Prohibitions. Elephants, hippopotami, rhinoceroses, or tapirs shall not be imported or entered into the United States...

9 CFR 93.806 - Animals refused entry.

Code of Federal Regulations, 2011 CFR

2011-01-01

... FOR MEANS OF CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.806 Animals refused entry. Any elephant, hippopotamus, rhinoceros, or tapir refused entry into the...

9 CFR 93.806 - Animals refused entry.

Code of Federal Regulations, 2010 CFR

2010-01-01

... FOR MEANS OF CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.806 Animals refused entry. Any elephant, hippopotamus, rhinoceros, or tapir refused entry into the...

9 CFR 93.806 - Animals refused entry.

Code of Federal Regulations, 2013 CFR

2013-01-01

... FOR MEANS OF CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.806 Animals refused entry. Any elephant, hippopotamus, rhinoceros, or tapir refused entry into the...

9 CFR 93.801 - Prohibitions.

Code of Federal Regulations, 2011 CFR

2011-01-01

... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.801 Prohibitions. Elephants, hippopotami, rhinoceroses, or tapirs shall not be imported or entered into the United States...

9 CFR 93.801 - Prohibitions.

Code of Federal Regulations, 2010 CFR

2010-01-01

... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.801 Prohibitions. Elephants, hippopotami, rhinoceroses, or tapirs shall not be imported or entered into the United States...

9 CFR 93.806 - Animals refused entry.

Code of Federal Regulations, 2012 CFR

2012-01-01

... FOR MEANS OF CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.806 Animals refused entry. Any elephant, hippopotamus, rhinoceros, or tapir refused entry into the...

9 CFR 93.801 - Prohibitions.

Code of Federal Regulations, 2012 CFR

2012-01-01

... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.801 Prohibitions. Elephants, hippopotami, rhinoceroses, or tapirs shall not be imported or entered into the United States...

9 CFR 93.801 - Prohibitions.

Code of Federal Regulations, 2013 CFR

2013-01-01

... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.801 Prohibitions. Elephants, hippopotami, rhinoceroses, or tapirs shall not be imported or entered into the United States...

Dining in the Pleistocene—Who's on the menu?

NASA Astrophysics Data System (ADS)

Kohn, Matthew J.; McKay, Moriah P.; Knight, James L.

2005-08-01

The Camelot local fauna, a new fossil locality in southeastern South Carolina, has yielded a spectacularly abundant and well-preserved late Irvingtonian (ca. 400 ka) megafauna, including saber-toothed cat (Smilodon fatalis), wolf (Canis armbrusteri), cheetah (Miracinonyx inexpectatus), “camels” (Hemiauchenia macrocephala and Paleolama mirifica), tapir (Tapirus veroensis), deer (Odocoileus virginianus), sloth (Megalonyx jeffersoni), and horse (Equus sp.). Of particular interest is the number of well-preserved fossil teeth and the ability to decipher paleoecologies and paleodiets, especially for carnivores, by using carbon isotope compositions (δ13C) of these teeth. P. mirifica, M. jeffersoni, O. virginianus, and T. veroensis have the lowest δ13C values (-16‰ to -13‰, Vienna Peedee belemnite standard); C. armbrusteri, S. fatalis, and H. macrocephala have intermediate values (-13‰ to -8‰); and Equus sp. has the highest values (-7‰ to -1‰). High (>-5‰) vs. low (≤-9‰) δ13C values for herbivores indicate local habitats dominated by warm-climate grasses vs. trees and shrubs. The high δ13C values for Equus sp. indicate the presence of grasslands, whereas the low δ13C values for the other herbivores generally indicate the presence of forests. Although few data are available for carnivores, moderate δ13C values for C. armbrusteri indicate that it preyed mainly upon forest herbivores. S. fatalis appears to have preferred marginal woodland-grassland areas.

Bridging the gap: simulations meet knowledge bases

NASA Astrophysics Data System (ADS)

King, Gary W.; Morrison, Clayton T.; Westbrook, David L.; Cohen, Paul R.

2003-09-01

Tapir and Krill are declarative languages for specifying actions and agents, respectively, that can be executed in simulation. As such, they bridge the gap between strictly declarative knowledge bases and strictly executable code. Tapir and Krill components can be combined to produce models of activity which can answer questions about mechanisms and processes using conventional inference methods and simulation. Tapir was used in DARPA's Rapid Knowledge Formation (RKF) project to construct models of military tactics from the Army Field Manual FM3-90. These were then used to build Courses of Actions (COAs) which could be critiqued by declarative reasoning or via Monte Carlo simulation. Tapir and Krill can be read and written by non-knowledge engineers making it an excellent vehicle for Subject Matter Experts to build and critique knowledge bases.

Association of Syscenus infelix (Crustacea: Isopoda: Aegidae) with benthopelagic rattail fishes, Nezumia spp. (Macrouridae), along the western North Atlantic continental slope

USGS Publications Warehouse

Ross, Steve W.; Sulak, K.J.; Munroe, T.A.

2001-01-01

During submersible surveys along the continental slope (summers of 1991 and 1992, 184-847 m) between False Cape, Virginia, and Cape Hatteras, North Carolina, USA, we observed the aegid isopod, Syscenus infelix Harger, attached to the macrourid Nezumia bairdii (Goode and Bean). This is the first report of S. infelix attached to fishes in the western North Atlantic. The association of this blind isopod with its host appears species specific. The large, conspicuous isopod always attached to a fish in the same location, the dorsal midline, immediately behind the first dorsal fin. Attachment appears to be long term, with the isopod forming a characteristic scar consisting of a distinct discolored oval depression with seven small, dark impressions that coalesce as the fish grows. Only one S. infelix was found on each host fish. The isopod occurred on 23.7% of N. bairdii observed from submersible on the middle continental slope off Virginia and North Carolina, compared with 16.6% of 1236 museum specimens of the same species (based on inspection for scars) collected at latitudes 26??-64??N. Prevalence of the fish-isopod association was not correlated with depth or latitude. We also found identical scars on preserved specimens of N. aequalis (2.6% of 660 specimens), N. sclerorhynchus (1.2% of 86 specimens), and N. suilla (14.3% of 7 specimens), mostly from areas outside the range of N. bairdii. No scars were found on museum specimens of N. atlantica (n = 27), N. cyrano (n = 57), or N. longebarbata (n = 7). The low incidence of isopod attachment on these species suggests that N. bairdii is the preferred host. Infestation by the isopod appears to result in erosion of host fish scales and tissue. We propose that S. infelix is an obligate associate of its host fish and should be considered parasitic.

9 CFR 93.805 - Ports of entry, inspection, and treatment. 1

Code of Federal Regulations, 2014 CFR

2014-01-01

...; REQUIREMENTS FOR MEANS OF CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs... the U.S. Department of the Interior regulations relevant to the importation of elephants, hippopotami, rhinoceroses, and tapirs, including regulations concerning ports of entry. (a) An elephant, hippopotamus...

9 CFR 93.805 - Ports of entry, inspection, and treatment. 1

Code of Federal Regulations, 2010 CFR

2010-01-01

...; REQUIREMENTS FOR MEANS OF CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs... the U.S. Department of the Interior regulations relevant to the importation of elephants, hippopotami, rhinoceroses, and tapirs, including regulations concerning ports of entry. (a) An elephant, hippopotamus...

9 CFR 93.805 - Ports of entry, inspection, and treatment. 1

Code of Federal Regulations, 2012 CFR

2012-01-01

...; REQUIREMENTS FOR MEANS OF CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs... the U.S. Department of the Interior regulations relevant to the importation of elephants, hippopotami, rhinoceroses, and tapirs, including regulations concerning ports of entry. (a) An elephant, hippopotamus...

9 CFR 93.805 - Ports of entry, inspection, and treatment. 1

Code of Federal Regulations, 2013 CFR

2013-01-01

...; REQUIREMENTS FOR MEANS OF CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs... the U.S. Department of the Interior regulations relevant to the importation of elephants, hippopotami, rhinoceroses, and tapirs, including regulations concerning ports of entry. (a) An elephant, hippopotamus...

9 CFR 93.805 - Ports of entry, inspection, and treatment. 1

Code of Federal Regulations, 2011 CFR

2011-01-01

...; REQUIREMENTS FOR MEANS OF CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs... the U.S. Department of the Interior regulations relevant to the importation of elephants, hippopotami, rhinoceroses, and tapirs, including regulations concerning ports of entry. (a) An elephant, hippopotamus...

Corynebacterium tapiri sp. nov. and Corynebacterium nasicanis sp. nov., isolated from a tapir and a dog, respectively.

PubMed

Baumgardt, Sandra; Loncaric, Igor; Kämpfer, Peter; Busse, Hans-Jürgen

2015-11-01

Two Gram-stain-positive bacterial isolates, strain 2385/12T and strain 2673/12T were isolated from a tapir and a dog's nose, respectively. The two strains were rod to coccoid-shaped, catalase-positive and oxidase-negative. The highest 16S rRNA gene sequence similarity identified Corynebacterium singulare CCUG 37330T (96.3% similarity) as the nearest relative of strain 2385/12T and suggested the isolate represented a novel species. Corynebacterium humireducens DSM 45392T (98.7% 16S rRNA gene sequence similarity) was identified as the nearest relative of strain 2673/12T. Results from DNA-DNA hybridization with the type strain of C. humireducens demonstrated that strain 2673/12T also represented a novel species. Strain 2385/12T showed a quinone system consisting predominantly of menaquinones MK-8(H2) and MK-9(H2) whereas strain 2673/12T contained only MK-8(H2) as predominant quinone. The polar lipid profiles of the two strains showed the major compounds phosphatidylglycerol, diphosphatidylglycerol and an unidentified glycolipid. Phosphatidylinositol was identified as another major lipid in 2673/12T whereas it was only found in moderate amounts in strain 2385/12T. Furthermore, moderate to minor amounts of phosphatidylinositol-mannoside, β-gentiobiosyl diacylglycerol and variable counts of several unidentified lipids were detected in the two strains. Both strains contained corynemycolic acids. The polyamine patterns were characterized by the major compound putrescine in strain 2385/12T and spermidine in strain 2673/12T. In the fatty acid profiles, predominantly C18:1ω9c and C16:0 were detected. The two strains are distinguishable from each other and the nearest related established species of the genus Corynebacterium phylogenetically and phenotypically. In conclusion, two novel species of the genus Corynebacterium are proposed, namely Corynebacterium tapiri sp. nov. (type strain, 2385/12T = CCUG 65456T = LMG 28165T) and Corynebacterium nasicanis sp. nov. (type

9 CFR 93.804 - Declaration upon arrival.

Code of Federal Regulations, 2010 CFR

2010-01-01

... FOR MEANS OF CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.804 Declaration upon arrival. Upon arrival of an elephant, hippopotamus, rhinoceros, or tapir at a... importer; (f) The name and address of the broker; (g) The region from which the elephant, hippopotamus...

9 CFR 93.804 - Declaration upon arrival.

Code of Federal Regulations, 2012 CFR

2012-01-01

... FOR MEANS OF CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.804 Declaration upon arrival. Upon arrival of an elephant, hippopotamus, rhinoceros, or tapir at a... importer; (f) The name and address of the broker; (g) The region from which the elephant, hippopotamus...

9 CFR 93.804 - Declaration upon arrival.

Code of Federal Regulations, 2014 CFR

2014-01-01

... FOR MEANS OF CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.804 Declaration upon arrival. Upon arrival of an elephant, hippopotamus, rhinoceros, or tapir at a... importer; (f) The name and address of the broker; (g) The region from which the elephant, hippopotamus...

9 CFR 93.804 - Declaration upon arrival.

Code of Federal Regulations, 2013 CFR

2013-01-01

... FOR MEANS OF CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.804 Declaration upon arrival. Upon arrival of an elephant, hippopotamus, rhinoceros, or tapir at a... importer; (f) The name and address of the broker; (g) The region from which the elephant, hippopotamus...

9 CFR 93.804 - Declaration upon arrival.

Code of Federal Regulations, 2011 CFR

2011-01-01

... FOR MEANS OF CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.804 Declaration upon arrival. Upon arrival of an elephant, hippopotamus, rhinoceros, or tapir at a... importer; (f) The name and address of the broker; (g) The region from which the elephant, hippopotamus...

Does Plan B work? Home range estimations from stored on board and transmitted data sets produced by GPS-telemetry in the Colombian Amazon.

PubMed

Cabrera, Jaime A; Molina, Eduardo; González, Tania; Armenteras, Dolors

2016-12-01

Telemetry based on Global Positioning Systems (GPS) makes possible to gather large quantities of information in a very fine scale and work with species that were impossible to study in the past. When working with GPS telemetry, the option of storing data on board could be more desirable than the sole satellite transmitted data, due to the increase in the amount of locations available for analysis. Nonetheless, the uncertainty in the retrieving of the collar unit makes satellite-transmitted technologies something to take into account. Therefore, differences between store-on-board (SoB) and satellite-transmitted (IT) data sets need to be considered. Differences between SoB and IT data collected from two lowland tapirs (Tapirus terrestris), were explored by means of the calculation of home range areas by three different methods: the Minimum Convex Polygon (MCP), the Fixed Kernel Density Estimator (KDE) and the Brownian Bridges (BB). Results showed that SoB and IT data sets for the same individual were similar, with fix ranging from 63 % to 85 % respectively, and 16 m to 17 m horizontal errors. Depending on the total number of locations available for each individual, the home ranges estimated showed differences between 2.7 % and 79.3 %, for the 50 % probability contour and between 9.9 % and 61.8 % for the 95 % probability contour. These differences imply variations in the spatial coincidence of the estimated home ranges. We concluded that the use of IT data is not a good option for the estimation of home range areas if the collar settings have not been designed specifically for this use. Nonetheless, geographical representations of the IT based estimators could be of great help to identify areas of use, besides its assistance to locate the collar for its retrieval at the end of the field season and as a proximate backup when collars disappear.

Identification and phylogenetic analysis of novel cytochrome P450 1A genes from ungulate species.

PubMed

Darwish, Wageh Sobhy; Kawai, Yusuke; Ikenaka, Yoshinori; Yamamoto, Hideaki; Muroya, Tarou; Ishizuka, Mayumi

2010-09-01

As part of an ongoing effort to understand the biological response of wild and domestic ungulates to different environmental pollutants such as dioxin-like compounds, cDNAs encoding for CYP1A1 and CYP1A2 were cloned and characterized. Four novel CYP1A cDNA fragments from the livers of four wild ungulates (elephant, hippopotamus, tapir and deer) were identified. Three fragments from hippopotamus, tapir and deer were classified as CYP1A2, and the other fragment from elephant was designated as CYP1A1/2. The deduced amino acid sequences of these fragment CYP1As showed identities ranging from 76 to 97% with other animal CYP1As. The phylogenetic analysis of these fragments showed that both elephant and hippopotamus CYP1As made separate branches, while tapir and deer CYP1As were located beside that of horse and cattle respectively in the phylogenetic tree. Analysis of dN/dS ratio among the identified CYP1As indicated that odd toed ungulate CYP1A2s were exposed to different selection pressure.

Assessment of mammal reproduction for hunting sustainability through community-based sampling of species in the wild.

PubMed

Mayor, Pedro; El Bizri, Hani; Bodmer, Richard E; Bowler, Mark

2017-08-01

Wildlife subsistence hunting is a major source of protein for tropical rural populations and a prominent conservation issue. The intrinsic rate of natural increase. (r max ) of populations is a key reproductive parameter in the most used assessments of hunting sustainability. However, researchers face severe difficulties in obtaining reproductive data in the wild, so these assessments often rely on classic reproductive rates calculated mostly from studies of captive animals conducted 30 years ago. The result is a flaw in almost 50% of studies, which hampers management decision making. We conducted a 15-year study in the Amazon in which we used reproductive data from the genitalia of 950 hunted female mammals. Genitalia were collected by local hunters. We examined tissue from these samples to estimate birthrates for wild populations of the 10 most hunted mammals. We compared our estimates with classic measures and considered the utility of the use of r max in sustainability assessments. For woolly monkey (Lagothrix poeppigii) and tapir (Tapirus terrestris), wild birthrates were similar to those from captive populations, whereas birthrates for other ungulates and lowland-paca (Cuniculus paca) were significantly lower than previous estimates. Conversely, for capuchin monkeys (Sapajus macrocephalus), agoutis (Dasyprocta sp.), and coatis (Nasua nasua), our calculated reproductive rates greatly exceeded often-used values. Researchers could keep applying classic measures compatible with our estimates, but for other species previous estimates of r max may not be appropriate. We suggest that data from local studies be used to set hunting quotas. Our maximum rates of population growth in the wild correlated with body weight, which suggests that our method is consistent and reliable. Integration of this method into community-based wildlife management and the training of local hunters to record pregnancies in hunted animals could efficiently generate useful information of life

[Antibody therapy for Alzheimer's disease].

PubMed

Tabira, Takeshi; Matsumoto, Shin-Ei; Jin, Haifeng

2011-11-01

In order to avoid Abeta-induced autoimmune encephalitis, several monoclonal and polyclonal antibodies are in clinical trials. These are bapineuzumab, solanezumab, ponezumab, gantenerumab, BAN2401, gammaguard and octagam. Since each antibody has a different antigen epitope of Abeta, anti-amyloid activities are different. It is unknown which antibody is effective for Alzheimer disease, and we must wait for the result of clinical trials. Some patients who developed tissue amyloid plaque immuno-reactive (TAPIR) antibody showed slower decline after AN-1792 vaccination. We developed TAPIR-like monoclonal antibody, which was found to react with Abeta oligomers preferentially.

Where on Earth...? MISR Mystery Image Quiz #6

NASA Technical Reports Server (NTRS)

2002-01-01

Here's another chance to play geographical detective! This Multi-angle Imaging SpectroRadiometer (MISR) image covers an area of about 298 kilometers x 358 kilometers, and was captured by the instrument's vertical-viewing (nadir) camera on December 27, 2001. Use any reference materials you like and answer the following five questions: The large lagoon in the image is named for a particular type of bird. Name the bird. Note the sediment plume emanating from the southern end of the lagoon. Sailors in the 16th century imagined this outlet to be the mouth of a large river. What did they call the river? A series of wave-like points and curls form 'cusps' on the inner shores of the lagoon. Which ONE of the following is most responsible for the formation of these cusps? Violent storm impacts on erosion and accretion Wind and tide-driven sediment transport and circulation Tectonic folding associated with nearby mountain ridges Bathymetric effects of dredging operations True or false: Changes in regional precipitation associated with large scale atmospheric circulation patterns have no effect on the salinity of the lagoon's water. Which one of these is NOT distributed within the area covered by this image? Ruppia maritima Chelonia mydas Tapirus bairdii Microcystis aeruginosa E-mail your answers, name (initials are acceptable if you prefer), and your hometown by Tuesday, February 19, 2002 to suggestions@mail-misr.jpl.nasa.gov. Answers will be published on the MISR web site in conjunction with the next weekly image release. The names and home towns of respondents who answer all questions correctly by the deadline will also be published in the order responses were received. The first 3 people on this list who are not affiliated with NASA, JPL, or MISR and who did not win a prize in the last quiz will be sent a print of the image. A new 'Where on Earth...?' mystery appears as the MISR 'image of the week' approximately once per month. A new image of the week is released every

77 FR 74506 - Endangered Species; Receipt of Applications for Permit

Federal Register 2010, 2011, 2012, 2013, 2014

2012-12-14

... nebulosa) Yellow-footed rock wallaby (Petrogale xanthopus) Maned wolf (Chrysocyon brachyurus) Baird's tapir... applicant over a 5-year period. Families: Lemuridae Iguanidae Species: African wild dog (Lycaon pictus) Amur...

Copper-Based Torpedo Guidance Wire: Applications and Environmental Considerations

DTIC Science & Technology

2013-06-01

on day 91 had an additional toxicity evaluation using the developing larvae of the Mediterranean mussel, Mytilus galloprovincialis, concurrently...recent study conducted in 2008 did not. 4.3.1.3 Baird’s Beaked Whale (Berardius bairdii) Baird’s beaked whales have a diet consisting of benthic fish... Mediterranean are formed as Cuvier’s beaked whales chase down and feed upon benthic prey (Woodside, David, Frantzis, and Hooker, 2006). One of the easiest 38

Development of an Inconsistent Responding Scale for the Triarchic Psychopathy Measure.

PubMed

Mowle, Elyse N; Kelley, Shannon E; Edens, John F; Donnellan, M Brent; Smith, Shannon Toney; Wygant, Dustin B; Sellbom, Martin

2017-08-01

Inconsistent or careless responding to self-report measures is estimated to occur in approximately 10% of university research participants and may be even more common among offender populations. Inconsistent responding may be a result of a number of factors including inattentiveness, reading or comprehension difficulties, and cognitive impairment. Many stand-alone personality scales used in applied and research settings, however, do not include validity indicators to help identify inattentive response patterns. Using multiple archival samples, the current study describes the development of an inconsistent responding scale for the Triarchic Psychopathy Measure (TriPM; Patrick, 2010), a widely used self-report measure of psychopathy. We first identified pairs of correlated TriPM items in a derivation sample (N = 2,138) and then created a total score based on the sum of the absolute value of the differences for each item pair. The resulting scale, the Triarchic Assessment Procedure for Inconsistent Responding (TAPIR), strongly differentiated between genuine TriPM protocols and randomly generated TriPM data (N = 1,000), as well as between genuine protocols and those in which 50% of the original data were replaced with random item responses. TAPIR scores demonstrated fairly consistent patterns of association with some theoretically relevant correlates (e.g., inconsistency scales embedded in other personality inventories), although not others (e.g., measures of conscientiousness) across our cross-validation samples. Tentative TAPIR cut scores that may discriminate between attentively and carelessly completed protocols are presented. (PsycINFO Database Record (c) 2017 APA, all rights reserved).

9 CFR 93.800 - Definitions.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Definitions. 93.800 Section 93.800... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.800 Definitions. The... function involved. Person. Any individual, corporation, company, association, firm, partnership, society...

Bi-Static Deep Electromagnetic Soundings for Martian Subsurface Characterization: Experimental Validation in the Egyptian Western Desert

NASA Astrophysics Data System (ADS)

Ciarletti, V.; Le Gall, A.; Berthelier, J. J.; Corbel, Ch.; Dolon, F.; Ney, R.; Reineix, A.; Guiffaud, Ch.; Clifford, S.; Heggy, E.

2007-03-01

A bi-static version of the HF GPR TAPIR developed for martian deep soundings has been operated in the Egyptian Western Desert. The study presented focuses on the retrieval of the direction of arrival of the observed echoes on both simulated and measured d

9 CFR 93.803 - Health certificate.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Health certificate. 93.803 Section 93.803 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.803 Health...

9 CFR 93.803 - Health certificate.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 9 Animals and Animal Products 1 2014-01-01 2014-01-01 false Health certificate. 93.803 Section 93.803 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.803 Health...

9 CFR 93.803 - Health certificate.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 9 Animals and Animal Products 1 2011-01-01 2011-01-01 false Health certificate. 93.803 Section 93.803 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.803 Health...

9 CFR 93.803 - Health certificate.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 9 Animals and Animal Products 1 2013-01-01 2013-01-01 false Health certificate. 93.803 Section 93.803 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.803 Health...

9 CFR 93.803 - Health certificate.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 9 Animals and Animal Products 1 2012-01-01 2012-01-01 false Health certificate. 93.803 Section 93.803 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE... CONVEYANCE AND SHIPPING CONTAINERS Elephants, Hippopotami, Rhinoceroses, and Tapirs § 93.803 Health...

Effects of substrate type on plant growth and nitrogen and nitrate concentration in spinach

USDA-ARS?s Scientific Manuscript database

The effects of three commercial substrates (a mixture of forest residues, composted grape husks, and white peat; black peat; and coir) on plant growth and nitrogen (N) and nitrate (NO3) concentration and content were evaluated in spinach (Spinacia oleracea L. cv. Tapir). Spinach seedlings were trans...

The novel primers for mammal species identification-based mitochondrial cytochrome b sequence: implication for reserved wild animals in Thailand and endangered mammal species in Southeast Asia.

PubMed

Muangkram, Yuttamol; Wajjwalku, Worawidh; Amano, Akira; Sukmak, Manakorn

2018-01-01

We presented the powerful techniques for species identification using the short amplicon of mitochondrial cytochrome b gene sequence. Two faecal samples and one single hair sample of the Asian tapir were tested using the new cytochrome b primers. The results showed a high sequence similarity with the mainland Asian tapir group. The comparative sequence analysis of the reserved wild mammals in Thailand and the other endangered mammal species from Southeast Asia comprehensibly verified the potential of our novel primers. The forward and reverse primers were 94.2 and 93.2%, respectively, by the average value of the sequence identity among 77 species sequences, and the overall mean distance was 35.9%. This development technique could provide rapid, simple, and reliable tools for species confirmation. Especially, it could recognize the problematic biological specimens contained less DNA material from illegal products and assist with wildlife crime investigation of threatened species and related forensic casework.

Perissodactyla diet

USGS Publications Warehouse

Schoenecker, Kathryn A.

2018-01-01

Perissodactyla (Schoch 1989) includes tapirs, rhinoceros, wild asses, horses, and zebras. It is the order of hoofed mammals referred to as “odd-toed ungulates” because its members have one to three weight-bearing toes and walk on hoofs or “ungules.” They are herbivores that are specialized to exploit grasslands and brushy habitat (rhinos, horses, asses, zebras) or dense tropical forests (tapirs). All share a common digestive system called hindgut fermentation, or cecal digestion (in the cecum), and can consume relatively tough, coarse forage. Some perissodactyls are “browsers” that forage primarily on woody shrubs and trees, whereas others are “grazers” with a graminoid-dominated diet. They are all predominantly opportunistic feeders and select for quantity over quality of forage; that is, they consume more abundant low-quality forage instead of searching and selecting for higher-quality forage because it gives them the advantage of reducing search effort, which conserves energy.

Work Papers of the Summer Institute of Linguistics, University of North Dakota Session. Volume 38.

ERIC Educational Resources Information Center

Martlett, Stephen A., Ed.; Meyer, Jim, Ed.

This collection of eight papers and six "data squibs" (short research findings) are based on topics and languages under study by students and staff of the linguistics program of the University of North Dakota. The papers are: (1) "Dakota Sioux Objects" (Thomas M. Pinson); (2) "The Tapir: A Yanomami Text" (Irma…

Bistatic GPR Measurements in the Egyptian Western Desert - Measured and Simulated data

NASA Astrophysics Data System (ADS)

Ciarletti, V.; Le Gall, A.; Berthelier, J.; Ney, R.; Corbel, C.; Dolon, F.

2006-12-01

The TAPIR (Terrestrial And Planetary Investigation Radar) instrument has been designed at CETP (Centre d'etude des Environnements Terrestre et Planetaires) to explore the deep Martian subsurface (down to a few kilometers) and to detect liquid water reservoirs. TAPIR is an impulse ground penetrating radar operating at central frequencies ranging from 2 to 4 MHz operating from the surface. In November 2005, an updated version of the instrument working either in monostatic or in bi-static mode was tested in the Egyptian Western Desert. The work presented here focuses on the bi-static measurements performed on the Abou Saied plateau which shows a horizontally layered sub-surface. The electromagnetic signal was transmitted using one of the two orthogonal 70 m loaded electrical dipole antennas of the transmitting GPR. A second GPR, 50 or 100 meters apart, was dedicated to the signal reception. The received waves were characterized by a set of 5 measurements performed on the receiving GPR : the two horizontal components of the electric field and the three composants of the magnetic field. They were used to compute the direction of arrival of the incoming waves and to retrieve more accurately their propagation path and especially to discriminate between waves due to some sub-surface reflecting structure and those due to interaction with the surface clutter. A very efficient synchronization between the two radars enabled us to perform coherent additions up to 2^{31} which improves dramatically the obtained signal to noise ratio. Complementary electromagnetic measurements were conducted on the same site by the LPI (Lunar and Planetary Institute) and the SwRI (Southwest Research Institute). They provided independent information which helped the interpretation of the TAPIR data. Accurate simulations obtained by FDTD taking into account the information available are presented and used for both the interpretation of the measured data and the validation of the instrument.

[Scabies among the Zoo mammals].

PubMed

Zuchowska, E

1991-01-01

Scabies was observed in 9 species of mammals at the Zoological Garden of Lódź in years 1957-1989. Sarcoptes scabiei spp. was found in capybaras, tapirs and camelids. Notoedres cati was recorded from the siberian tiger, but Notoedres sp. from the Erinaceus europaeus. Scabies was also found in a wild dead Tapla europaea at the Zoo area.

An Archeological Overview and Management Plan for the Saginaw Army Aircraft Plant, Tarrant County, Texas.

DTIC Science & Technology

1984-05-28

recorded by Brown (1938), Doming (1969), Lewis (1970) Osborn (1909), and Simpson (1945) include tapirs, camel, and horse . After the extinction of the...megafauna resulted in the demise and eventual extinction of several predator species, including the Machaerodontidae (sabertooth tigers), dire wolf...Canis dirus) and the giant jaguar (Felis atrox) (Downing 1969; Simpson 1941). Individuals of Ursidae (bears), Felidae (cats), and Canidae (dogs, wolves

An Archeological Overview and Management Plan for the H.F. Denton Radio Station Property, Denton County, Texas.

DTIC Science & Technology

1984-06-04

Perissodactylids recorded by Osborn (1909), Domning (1969), Simpson (1945), Brown (1938) and Lewis (1970) include tapirs, camels and horses . After the...extinction of the megafauna resulted in the demise and eventual extinction of several predator species, including Machaero- dontidae (sabertooth cats), dire...wolf (Canis dirus) and the giant jaguar (Felis atrox) (Doming 1969; Simpson 1941). Individuals of Ursidae (bears), Felidae (cats) and Canidae (dogs

Time-dependent simulations of disk-embedded planetary atmospheres

NASA Astrophysics Data System (ADS)

Stökl, A.; Dorfi, E. A.

2014-03-01

At the early stages of evolution of planetary systems, young Earth-like planets still embedded in the protoplanetary disk accumulate disk gas gravitationally into planetary atmospheres. The established way to study such atmospheres are hydrostatic models, even though in many cases the assumption of stationarity is unlikely to be fulfilled. Furthermore, such models rely on the specification of a planetary luminosity, attributed to a continuous, highly uncertain accretion of planetesimals onto the surface of the solid core. We present for the first time time-dependent, dynamic simulations of the accretion of nebula gas into an atmosphere around a proto-planet and the evolution of such embedded atmospheres while integrating the thermal energy budget of the solid core. The spherical symmetric models computed with the TAPIR-Code (short for The adaptive, implicit RHD-Code) range from the surface of the rocky core up to the Hill radius where the surrounding protoplanetary disk provides the boundary conditions. The TAPIR-Code includes the hydrodynamics equations, gray radiative transport and convective energy transport. The results indicate that diskembedded planetary atmospheres evolve along comparatively simple outlines and in particular settle, dependent on the mass of the solid core, at characteristic surface temperatures and planetary luminosities, quite independent on numerical parameters and initial conditions. For sufficiently massive cores, this evolution ultimately also leads to runaway accretion and the formation of a gas planet.

First evidences of Amazonian wildlife feeding on petroleum-contaminated soils: A new exposure route to petrogenic compounds?

PubMed

Orta-Martínez, Martí; Rosell-Melé, Antoni; Cartró-Sabaté, Mar; O'Callaghan-Gordo, Cristina; Moraleda-Cibrián, Núria; Mayor, Pedro

2018-01-01

Videos recorded with infrared camera traps placed in petroleum contaminated areas of the Peruvian Amazon have shown that four wildlife species, the most important for indigenous peoples' diet (lowland tapir, paca, red-brocket deer and collared peccary), consume oil-contaminated soils and water. Further research is needed to clarify whether Amazonian wildlife's geophagy can be a route of exposure to petrogenic contamination for populations living in the vicinity of oil extraction areas and relying on subsistence hunting. Copyright © 2017 Elsevier Inc. All rights reserved.

Geochemical baseline studies of soil in Finland

NASA Astrophysics Data System (ADS)

Pihlaja, Jouni

2017-04-01

The soil element concentrations regionally vary a lot in Finland. Mostly this is caused by the different bedrock types, which are reflected in the soil qualities. Geological Survey of Finland (GTK) is carrying out geochemical baseline studies in Finland. In the previous phase, the research is focusing on urban areas and mine environments. The information can, for example, be used to determine the need for soil remediation, to assess environmental impacts or to measure the natural state of soil in industrial areas or mine districts. The field work is done by taking soil samples, typically at depth between 0-10 cm. Sampling sites are chosen to represent the most vulnerable areas when thinking of human impacts by possible toxic soil element contents: playgrounds, day-care centers, schools, parks and residential areas. In the mine districts the samples are taken from the areas locating outside the airborne dust effected areas. Element contents of the soil samples are then analyzed with ICP-AES and ICP-MS, Hg with CV-AAS. The results of the geochemical baseline studies are published in the Finnish national geochemical baseline database (TAPIR). The geochemical baseline map service is free for all users via internet browser. Through this map service it is possible to calculate regional soil baseline values using geochemical data stored in the map service database. Baseline data for 17 elements in total is provided in the map service and it can be viewed on the GTK's web pages (http://gtkdata.gtk.fi/Tapir/indexEN.html).

Evolution of monogamy, paternal investment, and female life history in Peromyscus.

PubMed

Jašarević, Eldin; Bailey, Drew H; Crossland, Janet P; Dawson, Wallace D; Szalai, Gabor; Ellersieck, Mark R; Rosenfeld, Cheryl S; Geary, David C

2013-02-01

The timing of reproductive development and associated trade-offs in quantity versus quality of offspring produced across the life span are well documented in a wide range of species. The relation of these aspects of maternal life history to monogamy and paternal investment in offspring is not well studied in mammals, due in part to the rarity of the latter. By using five large, captive-bred populations of Peromyscus species that range from promiscuous mating with little paternal investment (P. maniculatus bairdii) to social and genetic monogamy with substantial paternal investment (P. californicus insignis), we modeled the interaction between monogamy and female life history. Monogamy and high paternal investment were associated with smaller litter size, delayed maternal reproduction that extended over a longer reproductive life span, and larger, higher quality offspring. The results suggest monogamy and paternal investment can alter the evolution of female life-history trajectories in mammals. PsycINFO Database Record (c) 2013 APA, all rights reserved

Dynamic contrast-enhanced MRI evaluation of cerebral cavernous malformations.

PubMed

Hart, Blaine L; Taheri, Saeid; Rosenberg, Gary A; Morrison, Leslie A

2013-10-01

The aim of this study is to quantitatively evaluate the behavior of CNS cavernous malformations (CCMs) using a dynamic contrast-enhanced MRI (DCEMRI) technique sensitive for slow transfer rates of gadolinium. The prospective study was approved by the institutional review board and was HIPPA compliant. Written informed consent was obtained from 14 subjects with familial CCMs (4 men and 10 women, ages 22-76 years, mean 48.1 years). Following routine anatomic MRI of the brain, DCEMRI was performed for six slices, using T1 mapping with partial inversion recovery (TAPIR) to calculate T1 values, following administration of 0.025 mmol/kg gadolinium DTPA. The transfer rate (Ki) was calculated using the Patlak model, and Ki within CCMs was compared to normal-appearing white matter as well as to 17 normal control subjects previously studied. All subjects had typical MRI appearance of CCMs. Thirty-nine CCMs were studied using DCEMRI. Ki was low or normal in 12 lesions and elevated from 1.4 to 12 times higher than background in the remaining 27 lesions. Ki ranged from 2.1E-6 to 9.63E-4 min(-1), mean 3.55E-4. Normal-appearing white matter in the CCM patients had a mean Ki of 1.57E-4, not statistically different from mean WM Ki of 1.47E-4 in controls. TAPIR-based DCEMRI technique permits quantifiable assessment of CCMs in vivo and reveals considerable differences not seen with conventional MRI. Potential applications include correlation with biologic behavior such as lesion growth or hemorrage, and measurement of drug effects.

Dynamic Contrast-Enhanced MRI Evaluation of Cerebral Cavernous Malformations

PubMed Central

Hart, B. L.; Taheri, S.; Rosenberg, G. A.; Morrison, L. A.

2013-01-01

The aim of this study is to quantitatively evaluate the behavior of CNS cavernous malformations (CCMs) using a dynamic contrast-enhanced MRI (DCEMRI) technique sensitive for slow transfer rates of gadolinium. The prospective study was approved by the institutional review board and was HIPPA compliant. Written informed consent was obtained from 14 subjects with familial CCMs (4 men and 10 women, ages 22–76 years, mean 48.1 years). Following routine anatomic MRI of the brain, DCEMRI was performed for six slices, using T1 mapping with partial inversion recovery (TAPIR) to calculate T1 values, following administration of 0.025 mmol/kg gadolinium DTPA. The transfer rate (Ki) was calculated using the Patlak model, and Ki within CCMs was compared to normal-appearing white matter as well as to 17 normal control subjects previously studied. All subjects had typical MRI appearance of CCMs. Thirty-nine CCMs were studied using DCEMRI. Ki was low or normal in 12 lesions and elevated from 1.4 to 12 times higher than background in the remaining 27 lesions. Ki ranged from 2.1E–6 to 9.63E–4 min−1, mean 3.55E–4. Normal-appearing white matter in the CCM patients had a mean Ki of 1.57E–4, not statistically different from mean WM Ki of 1.47E–4 in controls. TAPIR-based DCEMRI technique permits quantifiable assessment of CCMs in vivo and reveals considerable differences not seen with conventional MRI. Potential applications include correlation with biologic behavior such as lesion growth or hemorrage, and measurement of drug effects. PMID:24323376

Assemblages of deep-sea fishes on the middle slope off Northwest Africa (26°-33° N, eastern Atlantic)

NASA Astrophysics Data System (ADS)

Pajuelo, J. G.; Seoane, J.; Biscoito, M.; Freitas, M.; González, J. A.

2016-12-01

The structure and composition of deep-sea fish assemblages living on the middle slope off NW Africa (26-33° N) were investigated. Data were collected by six commercial trawlers during experimental fishing (1027 hauls) at depths between 800 and 1515 m. A total of 1,115,727 fish specimens, belonging to 37 families and 96 species (24 Elasmobranchii, 5 Holocephali, and 67 Actinopteri) were collected with bottom trawls. The deep-sea demersal fish fauna off NW Africa is dominated by fishes of the family Macrouridae, followed by the Moridae and Alepocephalidae families. The main abundant species were Trachyrincus scabrus, Bathygadus favosus, Mora moro, Alepocephalus productus, Nezumia aequalis and Bathygadus melanobranchus. PERMANOVA analysis showed differences in demersal fish assemblages among bottom types, depth strata and between areas (north and south of parallel 30° N), with the area being the most influential factor followed by the type of substrate. PERMANOVAs computed separately for each area showed significant differences among the bottom types and depths in both areas. SIMPER analysis revealed that B. melanobranchus and B. favosus, which occurred at higher abundances in the area ≥30° N, were the species that were best discriminated between areas; whilst T. scabrus and M. moro occurred at higher abundances in the area <30° N. N. aequalis, B. favosus, B. melanobranchus, Deania hystricosa, Aphanopus intermedius, Coelorinchus labiatus and Halosaurus johnsonianus were restricted or more abundant in the area ≥30° N, and functioned as the discriminating species that most contributed to the average dissimilarity between areas. T. scabrus, M. moro, Alepocephalus productus and Alepocephalus bairdii were more abundant in the area <30° N. The standardized mean abundance (in number of individuals/km2) showed a decreasing pattern: i) with depth in both areas, north and south of parallel 30° N, and ii) with depth on each type of substrate, except on cold coral

Description of a new species of Ixodes Latreille, 1795 (Acari: Ixodidae) and redescription of I. lasallei Méndez & Ortiz, 1958, parasites of agoutis and pacas (Rodentia: Dasyproctidae, Cuniculidae) in Central and South America.

PubMed

Apanaskevich, Dmitry A; Bermúdez, Sergio E

2017-05-01

Ixodes bocatorensis n. sp. (Acari: Ixodidae), is described based on adults ex agoutis (Rodentia: Dasyproctidae), pacas (Rodentia: Cuniculidae) and "tapir and sloth" (Perissodactyla: Tapiridae and Pilosa) from Colombia, Panama and Venezuela. Adults of I. bocatorensis n. sp. are similar to those of I. lasallei Méndez & Ortiz, 1958 but can be distinguished by the scutum dimensions, punctation pattern, gnathosoma and palpi measurements and their ratios, basis capituli anterior angle and shape of the spur of palpal segment I ventrally. For comparative purposes the female of I. lasallei is redescribed and the true male of this species is described for the first time. Studied adults of I. lasallei were found on agoutis, pacas and ocelot (Carnivora: Felidae) in Colombia, Peru and Venezuela.

Associations of wintering birds with habitat in semidesert and plains grasslands in Arizona

USGS Publications Warehouse

Ruth, Janet M.; Stanley, Thomas R.; Gordon, Caleb E.

2014-01-01

We studied associations with winter habitat for seven species of birds, one species-group (eastern and western meadowlarks combined), and total sparrows at seven sites in the semidesert and plains grasslands of southeastern Arizona from 1999–2001, sampling with mist-nets and survey-transects. We measured structure and composition of vegetation, assessing vegetative differences among sites, and modeled associations between indices of avian abundance and six vegetative variables using generalized linear models. For all vegetative variables, there were significant differences among sites. Numbers of northern harriers (Circus cyaneus) were positively associated with total number of sparrows. Indices of abundance for individual species of birds were statistically correlated with various measures of structure and composition of vegetation. In particular, grasshopper (Ammodramus savannarum) and vesper (Pooecetes gramineus) sparrows were negatively associated with amount of bare ground; horned larks (Eremophila alpestris) were negatively associated with vertical grass density; Baird's sparrows (A. bairdii) were negatively associated with shrub density; meadowlarks (Sturnella magna and S. neglecta combined) were positively associated with native grass. Our results suggest that these species would benefit from management of habitat that affects the vegetative characteristics associated with their abundance.

Sarcodon in the Neotropics II: four new species from Colombia and a key to the regional species.

PubMed

Grupe, Arthur C; Vasco-Palacios, Aída Marcela; Smith, Matthew E; Boekhout, Teun; Henkel, Terry W

2016-01-01

This work reports on four species of the ectomycorrhizal (ECM) tooth fungus genus Sarcodon (Bankeraceae, Thelephorales, Basidiomycota) recently discovered in the Colombian Amazon. Sarcodon colombiensis sp. nov., Sarcodon rufobrunneus sp. nov., Sarcodon pallidogriseus sp. nov. and Sarcodon bairdii sp. nov. are described as new to science. These fungi occur in forests dominated by ECM trees in the genera Pseudomonotes (Dipterocarpaceae), Dicymbe (Fabaceae subfam. Caesalpinioideae) and Aldina (Fabaceae subfam. Papilionoideae). These records bring the number of Sarcodon species known from the Neotropics to 10. Each of the new species possesses the accepted diagnostic characters for the genus: pileate-stipitate stature, a dentate hymenophore, determinate basidiomata development, fleshy, non-zonate context, and brown, tuberculate basidiospores. Molecular phylogenetic analysis corroborated the generic placement of the species, and, in combination with morphological characters, confirmed that they are new to science. Macromorphological, micromorphological, habitat and DNA sequence data from the nuc rDNA internal transcribed spacer region (ITS) are provided for each of the new species. A key is provided that allows identification of all known Neotropical Sarcodon species and similar extralimital taxa. © 2016 by The Mycological Society of America.

The effects of differential prenatal and postnatal social enviroments on sexual maturation of young prairie deermice (Peromyscus maniculatus bairdii).

PubMed

Thomas, D; Terman, C R

1975-05-01

We compared the influence of different social enviroments on sexual maturation of young prairie deermice. Between 12 and 48 hr after parturition, one-half of a litter from a population was exchanged with one-half of a litter from a bisexual pair. In each situation the remaining half-litter served as controls for the exchange procedure. The testes and vesicular weights of population-reared males were significantly larger than those of males reared by bisexual pairs, irrespective of prenatal enviroment. Generally, population-reared females also had larger reproductive organs than those reared by bisexual pairs, although these differences were not statistically significant. There were no significant differences in the adrenal weights of males or females, but females reared by bisexual pairs had larger absolute and relative adrenals than females reared in populations.

Evolutionary affinities of the order Perissodactyla and the phylogenetic status of the superordinal taxa Ungulata and Altungulata.

PubMed

Graur, D; Gouy, M; Duret, L

1997-04-01

Contrary to morphological claims, molecular data indicate that the order Perissodactyla (e.g., horses, rhinoceroses, and tapirs) is neither part of the superordinal taxon Paenungulata (Sirenia, Proboscidea, and Hyracoidea) nor an immediate outgroup of the paenungulates. Rather, Perissodactyla is closer to Carnivora and Cetartiodactyla (Cetacea+Artiodactyla) than it is to the paenungulates. Therefore, two morphologically defined superordinal taxa, Altungulata (Proboscidea, Sirenia, Hyracoidea, and Perissodactyla) and Ungulata (Altungulata and Cetartiodactyla), are invalidated. Perissodactyla, Carnivora, and Cetartiodactyla are shown to constitute a rather tight trichotomy. However, a molecular analysis of 36 protein sequences with a total concatenated length of 7885 aligned amino acids indicates that Perissodactyla is closer to Cetartiodactyla than either taxa is to Carnivora. The relationships among Paenungulata, Primates, and the clade consisting of Perissodactyla, Carnivora, and Cetartiodactylaa could not be resolved on the basis of the available data.

Early Eocene fossils suggest that the mammalian order Perissodactyla originated in India.

PubMed

Rose, Kenneth D; Holbrook, Luke T; Rana, Rajendra S; Kumar, Kishor; Jones, Katrina E; Ahrens, Heather E; Missiaen, Pieter; Sahni, Ashok; Smith, Thierry

2014-11-20

Cambaytheres (Cambaytherium, Nakusia and Kalitherium) are recently discovered early Eocene placental mammals from the Indo-Pakistan region. They have been assigned to either Perissodactyla (the clade including horses, tapirs and rhinos, which is a member of the superorder Laurasiatheria) or Anthracobunidae, an obscure family that has been variously considered artiodactyls or perissodactyls, but most recently placed at the base of Proboscidea or of Tethytheria (Proboscidea+Sirenia, superorder Afrotheria). Here we report new dental, cranial and postcranial fossils of Cambaytherium, from the Cambay Shale Formation, Gujarat, India (~54.5 Myr). These fossils demonstrate that cambaytheres occupy a pivotal position as the sister taxon of Perissodactyla, thereby providing insight on the phylogenetic and biogeographic origin of Perissodactyla. The presence of the sister group of perissodactyls in western India near or before the time of collision suggests that Perissodactyla may have originated on the Indian Plate during its final drift toward Asia.

Demersal fish distribution and habitat use within and near Baltimore and Norfolk Canyons, U.S. Middle Atlantic Slope

USGS Publications Warehouse

Ross, Steve W.; Rhode, Mike; Quattrini, Andrea M.

2015-01-01

Numerous submarine canyons along the United States middle Atlantic continental margin support enhanced productivity, diverse and unique habitats, active fisheries, and are vulnerable to various anthropogenic disturbances. During two cruises (15 Aug–2 Oct 2012 and 30 Apr–27 May 2013), Baltimore and Norfolk canyons and nearby areas (including two cold seeps) were intensively surveyed to determine demersal fish distributions and habitat associations. Overall, 34 ROV dives (234–1612 m) resulted in 295 h of bottom video observations and numerous collections. These data were supplemented by 40, 30-min bottom trawl samples. Fish observations were assigned to five general habitat designations: 1) sand-mud (flat), 2) sloping sand-mud with burrows, 3) low profile gravel, rock, boulder, 4) high profile, canyon walls, rocks or ridges, and 5) seep-mixed hard and soft substrata, the later subdivided into seven habitats based on amounts of dead mussel and rock cover. The influence of corals, sponges and live mussels (seeps only) on fish distributions was also investigated. Both canyon areas supported abundant and diverse fish communities and exhibited a wide range of habitats, including extensive areas of deep-sea corals and sponges and two nearby methane seeps (380–430 m, 1455–1610 m). All methods combined yielded a total of 123 species of fishes, 12 of which are either new records for this region or have new range data. Depth was a major factor that separated the fish faunas into two zones with a boundary around 1400 m. Fishes defining the deeper zone included Lycodes sp.,Dicrolene introniger, Gaidropsaurus ensis, Hydrolagus affinis, Antimora rostrata, andAldrovandia sp. Fishes in the deep zone did not exhibit strong habitat affinities, despite the presence of a quite rugged, extensive methane seep. We propose that habitat specificity decreases with increasing depth. Fishes in the shallower zone, characterized by Laemonema sp., Phycis chesteri, Nezumia bairdii, Brosme

Testing a model of intonation in a tone language.

PubMed

Lindau, M

1986-09-01

Schematic fundamental frequency curves of simple statements and questions are generated for Hausa, a two-tone language of Nigeria, using a modified version of an intonational model developed by Gårding and Bruce [Nordic Prosody II, edited by T. Fretheim (Tapir, Trondheim, 1981), pp. 33-39]. In this model, rules for intonation and tones are separated. Intonation is represented as sloping grids of (near) parallel lines, inside which tones are placed. The tones are associated with turning points of the fundamental frequency contour. Local rules may also modify the exact placement of a tone within the grid. The continuous fundamental frequency contour is modeled by concatenating the tonal points using polynomial equations. Thus the final pitch contour is modeled as an interaction between global and local factors. The slope of the intonational grid lines depends at least on sentence type (statement or question), sentence length, and tone pattern. The model is tested by reference to data from nine speakers of Kano Hausa.

Area requirements of grassland birds: A regional perspective

USGS Publications Warehouse

Johnson, Douglas H.; Igl, Lawrence D.

2001-01-01

Area requirements of grassland birds have not been studied except in tallgrass prairie. We studied the relation between both species-occurrence and density and patch size by conducting 699 fixed-radius point counts of 15 bird species on 303 restored grassland areas in nine counties in four northern Great Plains states. Northern Harrier (Circus cyaneus), Sedge Wren (Cistothorus platensis), Clay-colored Sparrow (Spizella pallida), Grasshopper Sparrow (Ammodramus savannarum), Baird's Sparrow (Ammodramus bairdii), Le Conte's Sparrow (Ammodramus leconteii), and Bobolink (Dolichonyx oryzivorus) were shown to favor larger grassland patches in one or more counties. Evidence of area sensitivity was weak or ambivalent for Eastern Kingbird (Tyrannus tyrannus), Common Yellowthroat (Geothlypis trichas), Savannah Sparrow (Passerculus sandwichensis), and Western Meadowlark (Sturnella neglecta). Red-winged Blackbirds (Agelaius phoeniceus) preferred larger patches in some counties, and smaller patches in others. Mourning Doves (Zenaida macroura) and Brown- headed Cowbirds (Molothrus ater) tended to favor smaller grassland patches. Three species showed greater area sensitivity in counties where each species was more common. Five species demonstrated some spatial pattern of area sensitivity, either north to south or east to west. This study demonstrates the importance of replication in space; results from one area may not apply to others because of differences in study design, analytical methods, location relative to range of the species, and surrounding landscapes.

Conspecific attraction in a grassland bird, the Baird's Sparrow

USGS Publications Warehouse

Ahlering, M.A.; Johnson, D.H.; Faaborg, John

2006-01-01

Territorial songbirds generally use song to defend territories and attract mates, but conspecific song may also serve as a cue to attract other male songbirds to a breeding site. Although known to occur in some colonial and forest-associated species, only recently have investigators examined conspecific attraction in grassland species. We used a playback experiment to examine the possible role of conspecific attraction for males searching for potentially suitable breeding habitat in a grassland specialist, the Baird's Sparrow (Ammodramus bairdii). Experimental playback plots and control plots with similar landscape and vegetation characteristics were established at two sites in North Dakota. Baird's Sparrows colonized three of six experimental plots and none of six control plots. Males on experimental plots established territories adjacent to the playback stations and were sometimes observed counter-singing with the playback of conspecific songs. Vegetation characteristics were similar on all study plots, and did not explain differences in bird density on our treatment plots. Although we found that playback of conspecific songs attracted male Baird's Sparrows to previously unoccupied, potentially suitable habitat, further experiments are needed to examine the importance of conspecific attraction relative to other cues that birds may use, such as vegetation features. The conservation and management implications of conspecific attraction are not completely understood, but the presence of conspecifics should be considered as a potential cue in habitat selection by all species of birds. 

Oxygen binding properties of hemoglobin from the white rhinoceros (beta 2-GLU) and the tapir.

PubMed

Baumann, R; Mazur, G; Braunitzer, G

1984-04-01

The beta-chain of rhinoceros hemoglobin contains glutamic acid at position beta 2, and important site for the binding of organic phosphates. We have investigated the oxygen binding properties of this hemoglobin and its interaction with ATP, 2,3-diphosphoglycerate, CO2 and chloride. The results show that the presence of GLU at position beta 2 nearly abolishes the effect of organic phosphates and CO2, whereas the oxygen-linked binding of chloride is not affected. Thus rhinoceros hemoglobin has only protons and chloride anions as major allosteric effectors for the control of its oxygen affinity. From the results obtained with hemoglobin solutions it can be calculated that the blood oxygen affinity of the rhinoceros must be rather high with a P50 of about 20 torr at pH 7.4 and 37 degrees C, which conforms with observations obtained for other large mammals.

Was the Eocene Arctic a Source Area for Exotic Plants and Mammals? (Invited)

NASA Astrophysics Data System (ADS)

Eberle, J. J.; Harrington, G. J.; Fricke, H. C.; Humphrey, J.; Hackett, L.; Newbrey, M.; Hutchison, J. H.

2010-12-01

Today’s High Arctic is undergoing rapid warming, but the impact on its animal and plant communities is not clear. As a deep time analog to better understand and predict the impacts of global warming on the Arctic biota, early Eocene (52-53 Ma) rocks on Ellesmere Island, Nunavut in Canada’s High Arctic (~79°N latitude) preserve evidence of diverse terrestrial ecosystems that supported dense forests inhabited by turtles, alligators, snakes, primates, tapirs, brontotheres, and hippo-like Coryphodon. The fossil localities were just a few degrees further south and still well above the Arctic Circle during the early Eocene; consequently, the biota experienced months of continuous sunlight as well as darkness, the Arctic summer and winter, respectively. The flora and fauna of the early Eocene Arctic imply warmer, wetter conditions than at present, and recently published analyses of biogenic phosphate from fossil fish, turtle, and mammal estimate warm summers (19 - 20 C) and mild, above-freezing winters. In general, temperature estimates for the early Eocene Arctic can be compared to those found today in temperate rainforests in the Pacific Northwest of the United States. The early Eocene Arctic mammalian fauna shares most genera with coeval mid-latitude faunas thousands of kilometers to the south in the US Western Interior, and several genera also are shared with Europe and Asia. Recent analyses suggest that the large herbivores such as hippo-like Coryphodon were year-round inhabitants in the Eocene Arctic forests. Although several of the Eocene Arctic mammalian taxa are hypothesized to have originated in either mid-latitude North America or Asia, the earlier occurrence of certain clades (e.g., tapirs) in the Arctic raises the possibility of a northern high-latitude origin. Analysis of the early Eocene Arctic palynoflora indicates comparable richness to early Eocene plant communities in the US Western Interior, but nearly 50% of its species (mostly angiosperms) are

Chronological, taphonomical, and paleoenvironmental aspects of a Late Pleistocene mammalian fauna from Guanambi, Bahia, Brazil

NASA Astrophysics Data System (ADS)

Scherer, Carolina Saldanha; Pales, Letícia Francielle Moreira; Rosa, Mariane; Silva, Samara de Almeida da

2017-11-01

Bahia state is widely known for the presence of fossiliferous deposits of Late Pleistocene - early Holocene. Although most studies in the state have been carried out on cave environments, studies concerning natural tank deposits have been expanded in the last few years, particularly in other states of Northeast Brazil. Therefore, the present work aims to study two new natural tanks: "Lagoa das Abelhas" and "Lagoa do Rancho", in Guanambi municipality, south-central Bahia, Brazil. The identified taxa include representatives of Xenarthra (Eremotherium laurillardi, cf. Glossotherium sp., Pachyarmatherium brasiliense, Glyptodontinae, Propraopus sulcatus, Pampatherium humboldti, and Holmesina paulacoutoi), Notoungulata (Toxodontidae), Proboscidea, Perissodactyla (Tapirus terrestris and Equus (Amerhippus) neogaeus), and Cetartiodactyla (Camelidae). The taphonomic analysis allowed the fossiliferous deposit from Lagoa das Abelhas to be classified as an ex situ assemblage, while the Lagoa do Rancho deposit was interpreted as a peripheral assemblage. Based on its paleofaunal composition, the landscape of the Guanambi region would have comprised open areas with pastures and patches with arboreal elements. The 14C radiocarbon dating results point to ages of 22,230 ± 55 years for the Lagoa das Abelhas and 16,020 ± 40 years for the Lagoa do Rancho tanks, indicating that the Guanambi paleofauna lived during the Last Glacial Maximum, in a drier phase of the Late Pleistocene.

Feasibility of BNCT radiobiological experiments at the HYTHOR facility

NASA Astrophysics Data System (ADS)

Esposito, J.; Ceballos, C.; Soncin, M.; Fabris, C.; Friso, E.; Moro, D.; Colautti, P.; Jori, G.; Rosi, G.; Nava, E.

2008-06-01

HYTHOR (HYbrid Thermal spectrum sHifter tapirO Reactor) is a new thermal-neutron irradiation facility, which was installed and became operative in mid 2005 at the TAPIRO (TAratura PIla Rapida potenza 0) fast reactor, in the Casaccia research centre (near Rome) of ENEA (Ente per le Nuove tecnologie Energia ed Ambiente). The facility has been designed for in vivo radiobiological studies. In HYTHOR irradiation cavity, 1-6 mice can be simultaneously irradiated to study skin melanoma treatments with the BNCT (boron neutron capture therapy). The therapeutic effects of HYTHOR radiation field on mouse melanoma has been studied as a preliminary investigation before studying the tumour local control due to boron neutron capture effect after boronated molecule injection. The method to properly irradiate small animals has been precisely defined. Results show that HYTHOR radiation field is by itself effective in reducing the tumour-growth rate. This finding has to be taken into account in studying the effectiveness of new 10B carriers. A method to properly measure the reduction of the tumour-growth rate is reported and discussed.

Equids.

PubMed

Orlando, Ludovic

2015-10-19

Alongside domestic horses and donkeys, the horse family, also known as equids, comprises six extant wild species of asses and zebras (Figure 1). Equids are extremely well represented in the fossil record, comprising a 55 million-year evolutionary history, punctuated by many episodes of innovation, extinction and migration. Limited to the single genus Equus today, in the Miocene (23.0–5.3 million years ago) the equid family flourished, comprising more than twenty genera. The group originated in Northern America, where the earliest fossil forms have been found, the so-called Hyracotheres, no larger than small dogs. These animals were soft-leaf browsers and in contrast to modern equids, which roam on a single toe with a solid keratin hoof, their hindlimbs were three-toed and their forelimbs four-toed. Equids thus form, together with rhinos and tapirs, the perissodactyls, an order of mammals characterized by an odd number of toes. Unlike ruminants, they are hindgut fermenters, which digest plant cellulose in their intestines and not in differentiated multiple stomach chambers.

Passive acoustic monitoring using a towed hydrophone array results in identification of a previously unknown beaked whale habitat.

PubMed

Yack, Tina M; Barlow, Jay; Calambokidis, John; Southall, Brandon; Coates, Shannon

2013-09-01

Beaked whales are diverse and species rich taxa. They spend the vast majority of their time submerged, regularly diving to depths of hundreds to thousands of meters, typically occur in small groups, and behave inconspicuously at the surface. These factors make them extremely difficult to detect using standard visual survey methods. However, recent advancements in acoustic detection capabilities have made passive acoustic monitoring (PAM) a viable alternative. Beaked whales can be discriminated from other odontocetes by the unique characteristics of their echolocation clicks. In 2009 and 2010, PAM methods using towed hydrophone arrays were tested. These methods proved highly effective for real-time detection of beaked whales in the Southern California Bight (SCB) and were subsequently implemented in 2011 to successfully detect and track beaked whales during the ongoing Southern California Behavioral Response Study. The three year field effort has resulted in (1) the successful classification and tracking of Cuvier's (Ziphius cavirostris), Baird's (Berardius bairdii), and unidentified Mesoplodon beaked whale species and (2) the identification of areas of previously unknown beaked whale habitat use. Identification of habitat use areas will contribute to a better understanding of the complex relationship between beaked whale distribution, occurrence, and preferred habitat characteristics on a relatively small spatial scale. These findings will also provide information that can be used to promote more effective management and conservation of beaked whales in the SCB, a heavily used Naval operation and training region.

Newly documented host fishes for the eastern elliptio mussel (Elliptio complanata)

USGS Publications Warehouse

Galbraith, Heather S.

2013-01-01

The eastern elliptio (Elliptio complanata) is a common, abundant and ecologically important freshwater mussel that occurs throughout the Atlantic Slope drainage in the United States and Canada. Previous research has shown E. complanata glochidia to be host fish generalists, parasitizing yellow perch (Perca flavescens), banded killifish (Fundulus diaphanus), banded sculpin (Cottus carolinae), and seven centrarchid species. Past laboratory studies have been conducted in the Midwest and glochidia sources typically included lakes the Great Lakes basin or were unreported. The objective of this study was to identify host fishes for E. complanata from streams in the Mid-Atlantic region. We used artificial laboratory infections to test host suitability of 38 fish and two amphibian species with E. complanata glochidia from the Chesapeake Bay drainage. Glochidia successfully metamorphosed into juvenile mussels on five fish species: American eel (Anguilla rostrata), brook trout (Salvelinus fontinalis), lake trout (S. namaycush), mottled sculpin (C. bairdii), and slimy sculpin (C. cognatus). American eel was the most effective host, yielding the highest overall metamorphosis success (percentage of attached glochidia that transformed into juvenile mussels;{greater than or equal to}0.90) and producing 13.2 juveniles per fish overall. No juvenile E. complanata metamorphosed on other fish species tested, including many previously identified host fishes reported in the literature. Reasons for discrepancies in published host fish could include geographic variation in host use across the species' range, differences in host use between lentic and lotic populations, or poorly resolved taxonomy within the genus Elliptio.

Molecular analysis of stomach contents reveals important grass seeds in the winter diet of Baird's and Grasshopper sparrows, two declining grassland bird species.

PubMed

Titulaer, Mieke; Melgoza-Castillo, Alicia; Panjabi, Arvind O; Sanchez-Flores, Alejandro; Martínez-Guerrero, José Hugo; Macías-Duarte, Alberto; Fernandez, Jesús A

2017-01-01

We analyzed the diet of Baird's Sparrow (Ammodramus bairdii) and Grasshopper Sparrow (A. savannarum) in three different sites and sampling periods across the Chihuahuan Desert in northern Mexico. DNA from seeds in regurgitated stomach contents was sequenced using NGS technology and identified with a barcoding approach using the P6 loop of the trnL intron as genetic marker. During each sampling period, we collected random soil samples to estimate seed availability in the soil seed bank. Due to the variability and size of the genetic marker, the resolution was limited to a family level resolution for taxonomic classification of seeds, but in several cases a genus level was achieved. Diets contained a high diversity of seeds but were dominated by a limited number of genera/families. Seeds from Panicoideae (from the genera Panicum, Setaria, Eriochloa, Botriochloa, and Hackelochloa) contributed for the largest part to the diets (53 ± 19%), followed by Bouteloua (10 ± 12%). Depending on the site and sampling period, other important seeds in the diets were Eragrostideae, Pleuraphis, Asteraceae, Verbena, and Amaranthus. The most abundant seeds were not always preferred. Aristida and Chloris were common in the soil seed bank but these seeds were avoided by both bird species. Baird's and Grasshopper sparrows did not differ in seed preferences. This work highlights the importance of range management practices that favor seed production of Panicoideae and Bouteloua grasses to enhance winter habitat use and survival of Baird's and Grasshopper sparrows in the Chihuahuan Desert.

Migration stopovers and the conservation of arctic-breeding Calidrine sandpipers

USGS Publications Warehouse

Skagen, Susan K.

2006-01-01

Long-distance migration, one of the most physically demanding events in the animal kingdom, is well developed in many species of Charadriidae and Scolopacidae. Some shorebirds renowned for their extraordinary long-distance migrations, notably American Golden-Plover (Pluvialis dominica), Red Knot (Calidris canutus rufa), and White-rumped Sandpiper (C. fuscicollis), travel as many as 15,000 km between southern South American wintering grounds and Canadian Arctic breeding areas. Migration strategies of shorebirds vary in many aspects. There are remarkable accounts of shorebirds, such as northbound Red Knots, that stage in a few key sites for 2–3 weeks and lay on extensive body stores, then fly nonstop for distances of ≤2,500 km (Harrington 2001, Piersma et al. 2005). Less well known are the examples of populations that refuel only briefly at stopover sites, disperse broadly on the landscape, and fly shorter distances between sites (Skagen 1997, Haig et al. 1998, Warnock et al. 1998). This latter pattern applies to many long-distance migrant shorebirds that cross the interior plains of North America during spring and fall migrations. For them, interior wetland complexes provide critical refueling resources along the direct routes between summering and wintering grounds (Skagen et al. 1999). In this issue of The Auk, Krapu et al. (2006) describe patterns and implications of fat deposition by Semipalmated Sandpipers (C. pusilla), White-rumped Sandpipers, and Baird's Sandpipers (C. bairdii) refueling during northward migration across the prairies of mid-continental North America.

Crying tapir: the functionality of errors and accuracy in predator recognition in two neotropical high-canopy primates.

PubMed

Mourthé, Ítalo; Barnett, Adrian A

2014-01-01

Predation is often considered to be a prime driver in primate evolution, but, as predation is rarely observed in nature, little is known of primate antipredator responses. Time-limited primates should be highly discerning when responding to predators, since time spent in vigilance and avoidance behaviour may supplant other activities. We present data from two independent studies describing and quantifying the frequency, nature and duration of predator-linked behaviours in 2 high-canopy primates, Ateles belzebuth and Cacajao ouakary. We introduce the concept of 'pseudopredators' (harmless species whose appearance is sufficiently similar to that of predators to elicit antipredator responses) and predict that changes in behaviour should increase with risk posed by a perceived predator. We studied primate group encounters with non-primate vertebrates across 14 (Ateles) and 19 (Cacajao) months in 2 undisturbed Amazonian forests. Although preliminary, data on both primates revealed that they distinguished the potential predation capacities of other species, as predicted. They appeared to differentiate predators from non-predators and distinguished when potential predators were not an immediate threat, although they reacted erroneously to pseudopredators, on average in about 20% of the responses given toward other vertebrates. Reacting to pseudopredators would be interesting since, in predation, one error can be fatal to the prey. © 2015 S. Karger AG, Basel.

Molecular analysis of stomach contents reveals important grass seeds in the winter diet of Baird's and Grasshopper sparrows, two declining grassland bird species

PubMed Central

Melgoza-Castillo, Alicia; Panjabi, Arvind O.; Sanchez-Flores, Alejandro; Martínez-Guerrero, José Hugo; Macías-Duarte, Alberto; Fernandez, Jesús A.

2017-01-01

We analyzed the diet of Baird’s Sparrow (Ammodramus bairdii) and Grasshopper Sparrow (A. savannarum) in three different sites and sampling periods across the Chihuahuan Desert in northern Mexico. DNA from seeds in regurgitated stomach contents was sequenced using NGS technology and identified with a barcoding approach using the P6 loop of the trnL intron as genetic marker. During each sampling period, we collected random soil samples to estimate seed availability in the soil seed bank. Due to the variability and size of the genetic marker, the resolution was limited to a family level resolution for taxonomic classification of seeds, but in several cases a genus level was achieved. Diets contained a high diversity of seeds but were dominated by a limited number of genera/families. Seeds from Panicoideae (from the genera Panicum, Setaria, Eriochloa, Botriochloa, and Hackelochloa) contributed for the largest part to the diets (53 ± 19%), followed by Bouteloua (10 ± 12%). Depending on the site and sampling period, other important seeds in the diets were Eragrostideae, Pleuraphis, Asteraceae, Verbena, and Amaranthus. The most abundant seeds were not always preferred. Aristida and Chloris were common in the soil seed bank but these seeds were avoided by both bird species. Baird’s and Grasshopper sparrows did not differ in seed preferences. This work highlights the importance of range management practices that favor seed production of Panicoideae and Bouteloua grasses to enhance winter habitat use and survival of Baird’s and Grasshopper sparrows in the Chihuahuan Desert. PMID:29261732

Mixed-grass prairie passerines exhibit weak and variable responses to patch size

USGS Publications Warehouse

Davis, S.K.; Brigham, R.M.; Shaffer, T.L.; James, P.C.

2006-01-01

Much of our current understanding of the demographic effects of habitat fragmentation on bird populations is derived from studies of passerines in forests and tallgrass prairie surrounded by woody vegetation. We quantified grassland bird density, nest survival, and productivity in 41 native mixed-grass prairie pastures during 1997-2000 in southern Saskatchewan, Canada. Pastures ranged in size from 18 ha to 11,600 ha and were typically surrounded by agriculture (i.e., ranching and annual cropping). Grassland passerines did not respond strongly or uniformly to patch size. Sprague's Pipit (Anthus spragueii) was the only species whose density increased with pasture size. Patch size had minimal influence on nest survival of Sprague's Pipit or Clay-colored Sparrow (Spizella pallida); whereas nest survival increased with patch size for Savannah Sparrow (Passerculus sandwichensis) and declined for Baird's Sparrow (Ammodramus bairdii), Chestnut-collared Longspur (Calcarius ornatus), and Western Meadowlark (Sturnella neglecta). Time-specific factors (i.e., nest age, date, and year) were more important predictors of nest survival than patch size. Exploratory analyses indicated that effects of edge distance, pasture shape, or landscape on nest survival were just as likely as patch-size effects. However, effects of edge on Chestnut-collared Longspurs may be governed by landscape-level factors, because nest survival decreased with distance to edge in landscapes with increased amounts of cropland. Our results indicate that mixed-grass prairie parcels ≥18 ha play a role in the conservation of several grassland passerine species currently in decline, but the conservation of Sprague's Pipit likely depends on maintaining larger tracts of native prairie.

Songbird abundance in native and planted grassland varies with type and amount of grassland in the surrounding landscape

USGS Publications Warehouse

Davis, Stephen K.; Fisher, Ryan; Skinner, Susan; Shaffer, Terry L.; Brigham, R. Mark

2013-01-01

Agriculture and wildlife conservation programs have converted vast amounts of cropland into grasslands planted with exotic species. Understanding how landscape context influences avian use of native and planted grasslands is essential for developing effective conservation strategies in agricultural landscapes. Our primary objective was to determine the extent to which the amount and type of grassland in the surrounding landscape influences the abundance of grassland songbird species on native and planted grassland parcels in southern Saskatchewan and Alberta, Canada. Bird abundance was more strongly influenced by the amount and type of grassland within 400 m of breeding parcels than at larger spatial scales. Grassland specialists responded similarly to habitat and landscape type over both years and provinces. Sprague's pipit (Anthus spragueii) and Baird's sparrow (Ammodramus bairdii) were most common in native grassland parcels surrounded by native grassland and were more likely to occur in planted grasslands surrounded by native grassland. Bobolinks (Dolichonyx oryzivorus) were most common in planted grassland parcels, but their abundance increased with the amount of native grassland surrounding these parcels. Our findings indicate that the suitability of planted grasslands for these species is influenced by their proximity to native grassland. Grassland generalists showed mixed responses to habitat and landscape type over the 2 years (Le Conte's sparrow [Ammodramus leconteii]) and between provinces (Savannah sparrow [Passerculus sandwichensis] and western meadowlark [Sturnella neglecta]). Management to benefit grassland specialists should therefore consider the landscape context when seeding cultivated land to non-native grassland and conserve extant native grassland.

Reconstructing the migration patterns of late Pleistocene mammals from northern Florida, USA

NASA Astrophysics Data System (ADS)

Hoppe, Kathryn A.; Koch, Paul L.

2007-11-01

We used analyses of the strontium isotope ( 87Sr/ 86Sr) ratios of tooth enamel to reconstruct the migration patterns of fossil mammals collected along the Aucilla River in northern Florida. Specimens date to the late-glacial period and before the last glacial maximum (pre-LGM). Deer and tapir displayed low 87Sr/ 86Sr ratios that were similar to the ratios of Florida environments, which suggest that these taxa did not migrate long distance outside of the Florida region. Mastodons, mammoths, and equids all displayed a wide range of 87Sr/ 86Sr ratios. Some individuals in each taxon displayed low 87Sr/ 86Sr ratios that suggest they ranged locally, while other animals had high 87Sr/ 86Sr ratios that suggest they migrated long distances (> 150 km) outside of the Florida region. Mastodons were the only taxa from this region that provided enough well-dated specimens to compare changes in migration patterns over time. Pre-LGM mastodons displayed significantly lower 87Sr/ 86Sr ratios than late-glacial mastodons, which suggests that late-glacial mastodons from Florida migrated longer distances than their earlier counterparts. This change in movement patterns reflects temporal changes in regional vegetation patterns.

Congener Patterns of Persistent Organic Pollutants Establish the Extent of Contaminant Biotransport by Pacific Salmon in the Great Lakes.

PubMed

Gerig, Brandon S; Chaloner, Dominic T; Janetski, David J; Rediske, Richard R; O'Keefe, James P; Moerke, Ashley H; Lamberti, Gary A

2016-01-19

In the Great Lakes, introduced Pacific salmon (Oncorhynchus spp.) can transport persistent organic pollutants (POPs), such as polychlorinated biphenyls (PCBs) and polybrominated diphenyl ethers (PBDEs), to new environments during their spawning migrations. To explore the nature and extent of POP biotransport by salmon, we compared 58 PCB and 6 PBDE congeners found in spawning salmon directly to those in resident stream fish. We hypothesized that stream fish exposed to salmon spawners would have congener patterns similar to those of salmon, the presumed contaminant source. Using permutational multivariate analysis of variance (PERMANOVA) and nonmetric multidimensional scaling (NMDS), we found that POP congener patterns of Pacific salmon varied among regions in the Great Lakes basin (i.e., Lake Huron, Lake Michigan, or Lake Superior), tissue type (whole fish or eggs), and contaminant type (PCB or PBDE). For stream-resident fish, POP congener pattern was influenced by the presence of salmon, location (i.e., Great Lakes Basin), and species identity (i.e., brook trout [Salvelinus fontinalis] or mottled sculpin [Cottus bairdii]). Similarity in congener patterns indicated that salmon are a source of POPs to brook trout in stream reaches receiving salmon spawners from Lake Michigan and Lake Huron but not from Lake Superior. Congener patterns of mottled sculpin differed from those of brook trout and salmon, suggesting that brook trout and mottled sculpin either use salmon tissue to differing degrees, acquire POPs from different dietary sources, or bioaccumulate or metabolize POPs differently. Overall, our analyses identified the important role of salmon in contaminant biotransport but also demonstrated that the extent of salmon-mediated POP transfer and uptake in Great Lakes tributaries is location- and species-specific.

Using the North American Breeding Bird Survey to assess broad-scale response of the continent's most imperiled avian community, grassland birds, to weather variability

USGS Publications Warehouse

Gorzo, Jessica; Pidgeon, Anna M.; Thogmartin, Wayne E.; Allstadt, Andrew J.; Radeloff, Volker C.; Heglund, Patricia J.; Vavrus, Stephen J.

2016-01-01

Avian populations can respond dramatically to extreme weather such as droughts and heat waves, yet patterns of response to weather at broad scales remain largely unknown. Our goal was to evaluate annual variation in abundance of 14 grassland bird species breeding in the northern mixed-grass prairie in relation to annual variation in precipitation and temperature. We modeled avian abundance during the breeding season using North American Breeding Bird Survey (BBS) data for the U.S. Badlands and Prairies Bird Conservation Region (BCR 17) from 1980 to 2012. We used hierarchical Bayesian methods to fit models and estimate the candidate weather parameters standardized precipitation index (SPI) and standardized temperature index (STI) for the same year and the previous year. Upland Sandpiper (Bartramia longicauda) responded positively to within-year STI (β = 0.101), and Baird's Sparrow (Ammodramus bairdii) responded negatively to within-year STI (β = −0.161) and positively to within-year SPI (β = 0.195). The parameter estimates were superficially similar (STI β = −0.075, SPI β = 0.11) for Grasshopper Sparrow (Ammodramus savannarum), but the best-selected model included an interaction between SPI and STI. The best model for both Eastern Kingbird (Tyrannus tyrannus) and Vesper Sparrow (Pooecetes gramineus) included the additive effects of within-year SPI (β = −0.032 and β = −0.054, respectively) and the previous-year's SPI (β = −0.057 and −0.02, respectively), although for Vesper Sparrow the lag effect was insignificant. With projected warmer, drier weather during summer in the Badlands and Prairies BCR, Baird's and Grasshopper sparrows may be especially threatened by future climate change.

Back to basics: A methodological perspective on marble-burying behavior as a screening test for psychiatric illness.

PubMed

de Brouwer, Geoffrey; Wolmarans, De Wet

2018-04-22

Animal models of human psychiatric illness are valuable frameworks to investigate the etiology and neurobiology underlying the human conditions. Accurate behavioral measures that can be used to characterize animal behavior, thereby contributing to a model's validity, are crucial. One such measure, i.e. the rodent marble-burying test (MBT), is often applied as a measure of anxiety- and compulsive-like behaviors. However, the test is characterized by noteworthy between-laboratory methodological differences and demonstrates positive treatment responses to an array of pharmacotherapies that are often of little translational value. Therefore, using a naturalistic animal model of obsessive-compulsive disorder, i.e. the deer mouse (Peromyscus maniculatus bairdii), the current investigation attempted to illuminate the discrepancies reported in literature by means of a methodological approach to the MBT. Five key aspects of the test that vary between laboratories, viz. observer/scoring, burying substrate, optional avoidance, the use of repeated testing, and determinations of locomotor activity, have been investigated. Following repeated MB tests in four different burying substrates and in two zone configurations, we have demonstrated that 1) observer bias may contribute to the significant differences in findings reported, 2) MB seems to be a natural exploratory response to a novel environment, rather than being triggered by aberrant cognition, 3) burying substrates with a small particle size and higher density deliver the most accurate results with respect to the burying phenotype, and 4) to exclude the influence of normal exploratory behavior on the number of marbles being covered, assessments of marble-burying should be based on pre-occupation with the objects itself. Copyright © 2018 Elsevier B.V. All rights reserved.

Ancient collagen reveals evolutionary history of the endemic South American ‘ungulates’

PubMed Central

Buckley, Michael

2015-01-01

Since the late eighteenth century, fossils of bizarre extinct creatures have been described from the Americas, revealing a previously unimagined chapter in the history of mammals. The most bizarre of these are the ‘native’ South American ungulates thought to represent a group of mammals that evolved in relative isolation on South America, but with an uncertain affinity to any particular placental lineage. Many authors have considered them descended from Laurasian ‘condylarths’, which also includes the probable ancestors of perissodactyls and artiodactyls, whereas others have placed them either closer to the uniquely South American xenarthrans (anteaters, armadillos and sloths) or the basal afrotherians (e.g. elephants and hyraxes). These hypotheses have been debated owing to conflicting morphological characteristics and the hitherto inability to retrieve molecular information. Of the ‘native’ South American mammals, only the toxodonts and litopterns persisted until the Late Pleistocene–Early Holocene. Owing to known difficulties in retrieving ancient DNA (aDNA) from specimens from warm climates, this research presents a molecular phylogeny for both Macrauchenia patachonica (Litopterna) and Toxodon platensis (Notoungulata) recovered using proteomics-based (liquid chromatography–tandem mass spectrometry) sequencing analyses of bone collagen. The results place both taxa in a clade that is monophyletic with the perissodactyls, which today are represented by horses, rhinoceroses and tapirs. PMID:25833851

A rhinocerotid-dominated megafauna at the MIS6-5 transition: The late Middle Pleistocene Coc Muoi assemblage, Lang Son province, Vietnam

NASA Astrophysics Data System (ADS)

Bacon, Anne-Marie; Antoine, Pierre-Olivier; Huong, Nguyen Thi Mai; Westaway, Kira; Tuan, Nguyen Anh; Duringer, Philippe; Zhao, Jian-xin; Ponche, Jean-Luc; Dung, Sam Canh; Nghia, Truong Huu; Minh, Tran Thi; Son, Pham Thanh; Boyon, Marc; Thuy, Nguyen Thi Kim; Blin, Amandine; Demeter, Fabrice

2018-04-01

Little is known about the ecosystems in the north of the Indochinese peninsula at the Middle-Late Pleistocene transition. In this paper, we analyzed the new fauna from Coc Muoi cave, Lang Son province, northeast Vietnam. In comparison with other well-documented faunas from the region, that of Coc Muoi is distinguished by the predominance of rhinoceroses among diverse large-bodied herbivores. The results of the OSL and pIR-IRSL dating of the cave sediments and U-series dating of flowstones indicate a potential age range of 148-117 ka for the fauna (MIS6-5). The analysis of age-at-death distributions of rhinoceroses, wild cattle, sambar deer, and wild pig, does not show any apparent selectivity of age classes. We also focused our study on rhinoceroses, tapirs, and wild cattle by analyzing the prevalence of hypoplastic defects on deciduous and permanent teeth, in an attempt to assess the health status of the taxa during their first years of growth. The health status of large-bodied herbivores (kouprey and rhinoceros) reveals the importance of stressors (biotic and abiotic) in the rainforest environment during a period of marked climatic transition (MIS6-5) in comparison with other MIS5-4 well-documented faunas from the region.

Seed deposition patterns and the survival of seeds and seedlings of the palm Euterpe edulis

NASA Astrophysics Data System (ADS)

Pizo, Marco A.; Simão, Isaac

2001-08-01

The seed deposition pattern created by a seed disperser is one of the components of the efficiency of a species as seed disperser, and ultimately may influence the recruitment of a plant species. In this study, we used the seeds of a bird-dispersed forest palm, Euterpe edulis, to investigate the effects of two distinct seed deposition patterns created by birds that defecate (clumped pattern) and regurgitate seeds (loose-clumped pattern) on the survival of seeds experimentally set in an E. edulis-rich site, and of seedlings grown under shade-house conditions. The study was conducted in the lowland forest of Parque Estadual Intervales, SE Brazil. Clumped and loose-clumped seeds were equally preyed upon by rodents and insects. Although clumped and isolated seedlings had the same root weight after 1 year, the isolated seedlings survived better and presented more developed shoots, suggesting intraspecific competition among clumped seedlings. Our results indicate that animals that deposit E. edulis seeds in faecal clumps (e.g. cracids, tapirs) are less efficient seed dispersers than those that regurgitate seeds individually (e.g. trogons, toucans). Intraspecific competition among seedlings growing from faecal clumps is a likely process preventing the occurrence of clumps of adult palms.

Ectoparasitism on deep-sea fishes in the western North Atlantic: In situ observations from ROV surveys.

PubMed

Quattrini, Andrea M; Demopoulos, Amanda W J

2016-12-01

A complete understanding of how parasites influence marine ecosystem functioning requires characterizing a broad range of parasite-host interactions while determining the effects of parasitism in a variety of habitats. In deep-sea fishes, the prevalence of parasitism remains poorly understood. Knowledge of ectoparasitism, in particular, is limited because collection methods often cause dislodgment of ectoparasites from their hosts. High-definition video collected during 43 remotely operated vehicle surveys (2013-2014) provided the opportunity to examine ectoparasitism on fishes across habitats (open slope, canyon, seamount, cold seep) and depths (494-4689 m) off the northeastern U.S., while providing high-resolution images and valuable observations of fish behavior. Only 9% (n = 125 individuals) of all observed fishes (25 species) were confirmed with ectoparasites, but higher percentages (∼33%) were observed for some of the most abundant fish species (e.g., Antimora rostrata). Ectoparasites included two copepod families (Lernaeopodidae, Sphyriidae) that infected four host species, two isopod families (Cymothoidae, Aegidae) that infected three host species, and one isopod family (Gnathiidae) that infected 19 host species. Hyperparasitism was also observed. As host diversity declined with depth, ectoparasite diversity declined; only gnathiids were observed at depths down to 3260 m. Thus, gnathiids appear to be the most successful group to infect a diversity of fishes across a broad depth range in the deep sea. For three dominant fishes (A. rostrata, Nezumia bairdii, Synaphobranchus spp.), the abundance and intensity of ectoparasitism peaked in different depths and habitats depending on the host species examined. Notably, gnathiid infections were most intense on A. rostrata, particularly in submarine canyons, suggesting that these habitats may increase ectoparasite infections. Although ectoparasitism is often overlooked in deep-sea benthic communities, our

Declining Abundance of Beaked Whales (Family Ziphiidae) in the California Current Large Marine Ecosystem

PubMed Central

Moore, Jeffrey E.; Barlow, Jay P.

2013-01-01

Beaked whales are among the most diverse yet least understood groups of marine mammals. A diverse set of mostly anthropogenic threats necessitates improvement in our ability to assess population status for this cryptic group. The Southwest Fisheries Science Center (NOAA) conducted six ship line-transect cetacean abundance surveys in the California Current off the contiguous western United States between 1991 and 2008. We used a Bayesian hidden-process modeling approach to estimate abundance and population trends of beaked whales using sightings data from these surveys. We also compiled records of beaked whale stranding events (3 genera, at least 8 species) on adjacent beaches from 1900 to 2012, to help assess population status of beaked whales in the northern part of the California Current. Bayesian posterior summaries for trend parameters provide strong evidence of declining beaked whale abundance in the study area. The probability of negative trend for Cuvier's beaked whale (Ziphius cavirostris) during 1991–2008 was 0.84, with 1991 and 2008 estimates of 10771 (CV = 0.51) and ≈7550 (CV = 0.55), respectively. The probability of decline for Mesoplodon spp. (pooled across species) was 0.96, with 1991 and 2008 estimates of 2206 (CV = 0.46) and 811 (CV = 0.65). The mean posterior estimates for average rate of decline were 2.9% and 7.0% per year. There was no evidence of abundance trend for Baird's beaked whale (Berardius bairdii), for which annual abundance estimates in the survey area ranged from ≈900 to 1300 (CV≈1.3). Stranding data were consistent with the survey results. Causes of apparent declines are unknown. Direct impacts of fisheries (bycatch) can be ruled out, but impacts of anthropogenic sound (e.g., naval active sonar) and ecosystem change are plausible hypotheses that merit investigation. PMID:23341907

Extensively remodeled, fractured cetacean tympanic bullae show that whales can survive traumatic injury to the ears.

PubMed

Yamato, Maya; Khidas, Kamal; Pyenson, Nicholas D; Fordyce, R Ewan; Mead, James G

2016-01-01

Underwater human activities and anthropogenic noise in our oceans may be a major source of habitat degradation for marine life. This issue was highlighted by the opening of the United States Eastern Seaboard for seismic oil and gas exploration in 2014, which generated massive media coverage and widespread concern that seismic surveys could kill or deafen whales. We discovered 11 new specimens of fractured and healed cetacean ear bones, out of a survey of 2127 specimens housed in museum collections. This rare condition has been previously reported only in two specimens of blue whales (Balaenoptera musculus) from the early 1900s, summarized by Fraser & Purves (1953). All of our new specimens are represented by species for which this condition had never been reported previously, including both baleen and toothed whales. The baleen whale specimens (Balaenoptera physalus, Balaenoptera borealis, Balaenoptera acutorostrata) were collected during Canadian commercial whaling operations in the Atlantic Ocean in the 1970s; the specimens include ear bones with well-healed fractures, demonstrating that baleen whales are capable of overcoming traumatic injury to the ears. The toothed whale specimens (Delphinus sp., Berardius bairdii) were found dead on beaches in 1972 and 2001, respectively, with less remodeled fractures. Thus, ear injuries may be more lethal to the echolocating toothed whales, which rely on hearing for navigation and foraging. We explore several hypotheses regarding how these injuries could have occurred, and conclude that the most parsimonious explanations appear to be both direct and indirect effects of lytic processes from disease or calcium depletion, or damage from external pressure waves. Although further research is required to confirm whether the fractures resulted from natural or human-induced events, this study underscores the importance of museum collections and the work of stranding networks in understanding the potential effects of modern human

Attractiveness of native mammal's feces of different trophic guilds to dung beetles (Coleoptera: Scarabaeinae).

PubMed

Bogoni, Juliano A; Hernández, Malva I M

2014-01-01

Mammal feces are the primary food and nesting resource for the majority of dung beetle species, and larval development depends on the quantity and quality of that resource. Physiological necessities, competitive interactions, and resource sharing are common and suggest that dung beetles may show preferences for feces of greater nutritional quality, which may in turn impact beetle assemblages and community structure. This study investigated whether attractiveness of dung beetles to different resource (feces) types varies depending on mammal trophic guild and associated nutritional content. This study was conducted in Atlantic Forest fragments in the Parque Estadual da Serra do Tabuleiro, Santa Catarina, Brazil. To evaluate attractiveness, the feces of the carnivore Puma concolor, the omnivores Cerdocyon thous and Sapajus nigritus, and the herbivore Tapirus terrestris were utilized as bait. Dung was collected from zoo animals fed a standard diet. Sampling was performed in triplicate in five areas in the summer of 2013. Four pitfall traps were established in each area, and each trap was baited with one type of mammal feces. Food preference of the species was analyzed by calculating Rodgers' index for cafeteria-type experiments. In total, 426 individuals from 17 species were collected. Rodgers' index showed that omnivorous mammal feces (C. thous) were most attractive to all dung beetle species, although it is known that dung beetles are commonly opportunistic with respect to search for and allocation of food resources. These results suggest that mammal loss could alter competitive interactions between dung beetles. © The Author 2014. Published by Oxford University Press on behalf of the Entomological Society of America.

Attractiveness of Native Mammal’s Feces of Different Trophic Guilds to Dung Beetles (Coleoptera: Scarabaeinae)

PubMed Central

Bogoni, Juliano A.; Hernández, Malva I. M.

2014-01-01

Abstract Mammal feces are the primary food and nesting resource for the majority of dung beetle species, and larval development depends on the quantity and quality of that resource. Physiological necessities, competitive interactions, and resource sharing are common and suggest that dung beetles may show preferences for feces of greater nutritional quality, which may in turn impact beetle assemblages and community structure. This study investigated whether attractiveness of dung beetles to different resource (feces) types varies depending on mammal trophic guild and associated nutritional content. This study was conducted in Atlantic Forest fragments in the Parque Estadual da Serra do Tabuleiro, Santa Catarina, Brazil. To evaluate attractiveness, the feces of the carnivore Puma concolor , the omnivores Cerdocyon thous and Sapajus nigritus, and the herbivore Tapirus terrestris were utilized as bait. Dung was collected from zoo animals fed a standard diet. Sampling was performed in triplicate in five areas in the summer of 2013. Four pitfall traps were established in each area, and each trap was baited with one type of mammal feces. Food preference of the species was analyzed by calculating Rodgers’ index for cafeteria-type experiments. In total, 426 individuals from 17 species were collected. Rodgers’ index showed that omnivorous mammal feces ( C. thous ) were most attractive to all dung beetle species , although it is known that dung beetles are commonly opportunistic with respect to search for and allocation of food resources. These results suggest that mammal loss could alter competitive interactions between dung beetles. PMID:25528749

Dispersal limitation induces long-term biomass collapse in overhunted Amazonian forests

PubMed Central

Peres, Carlos A.; Emilio, Thaise; Schietti, Juliana; Desmoulière, Sylvain J. M.; Levi, Taal

2016-01-01

Tropical forests are the global cornerstone of biological diversity, and store 55% of the forest carbon stock globally, yet sustained provisioning of these forest ecosystem services may be threatened by hunting-induced extinctions of plant–animal mutualisms that maintain long-term forest dynamics. Large-bodied Atelinae primates and tapirs in particular offer nonredundant seed-dispersal services for many large-seeded Neotropical tree species, which on average have higher wood density than smaller-seeded and wind-dispersed trees. We used field data and models to project the spatial impact of hunting on large primates by ∼1 million rural households throughout the Brazilian Amazon. We then used a unique baseline dataset on 2,345 1-ha tree plots arrayed across the Brazilian Amazon to model changes in aboveground forest biomass under different scenarios of hunting-induced large-bodied frugivore extirpation. We project that defaunation of the most harvest-sensitive species will lead to losses in aboveground biomass of between 2.5–5.8% on average, with some losses as high as 26.5–37.8%. These findings highlight an urgent need to manage the sustainability of game hunting in both protected and unprotected tropical forests, and place full biodiversity integrity, including populations of large frugivorous vertebrates, firmly in the agenda of reducing emissions from deforestation and forest degradation (REDD+) programs. PMID:26811455

Dispersal limitation induces long-term biomass collapse in overhunted Amazonian forests.

PubMed

Peres, Carlos A; Emilio, Thaise; Schietti, Juliana; Desmoulière, Sylvain J M; Levi, Taal

2016-01-26

Tropical forests are the global cornerstone of biological diversity, and store 55% of the forest carbon stock globally, yet sustained provisioning of these forest ecosystem services may be threatened by hunting-induced extinctions of plant-animal mutualisms that maintain long-term forest dynamics. Large-bodied Atelinae primates and tapirs in particular offer nonredundant seed-dispersal services for many large-seeded Neotropical tree species, which on average have higher wood density than smaller-seeded and wind-dispersed trees. We used field data and models to project the spatial impact of hunting on large primates by ∼ 1 million rural households throughout the Brazilian Amazon. We then used a unique baseline dataset on 2,345 1-ha tree plots arrayed across the Brazilian Amazon to model changes in aboveground forest biomass under different scenarios of hunting-induced large-bodied frugivore extirpation. We project that defaunation of the most harvest-sensitive species will lead to losses in aboveground biomass of between 2.5-5.8% on average, with some losses as high as 26.5-37.8%. These findings highlight an urgent need to manage the sustainability of game hunting in both protected and unprotected tropical forests, and place full biodiversity integrity, including populations of large frugivorous vertebrates, firmly in the agenda of reducing emissions from deforestation and forest degradation (REDD+) programs.

Osteoarthritis in two marine mammals and 22 land mammals: learning from skeletal remains.

PubMed

Nganvongpanit, Korakot; Soponteerakul, Ratsadakorn; Kaewkumpai, Piyatida; Punyapornwithaya, Veerasak; Buddhachat, Kittisak; Nomsiri, Raksiri; Kaewmong, Patcharaporn; Kittiwatanawong, Kongkiat; Chawangwongsanukun, Rachanchai; Angkawanish, Taweepoke; Thitaram, Chatchote; Mahakkanukrauh, Pasuk

2017-07-01

The occurrence of osteoarthritis (OA) in marine mammals is still questionable. Here we investigated the prevalence of OA in marine (dolphin and dugong) and terrestrial mammals (Asian elephant, Asiatic buffalo, camel, cat, cattle, deer, dog, domestic goat, horse, human, hyena, impala, lion, Malayan tapir, Assam macaque, mule, pig, rabbit, red kangaroo, sheep, tiger and waterbuck). Skeletal remains obtained from five institutes were used as subjects; a total of 45 different parts (locations) of bones were observed for OA lesions. The prevalence of OA was reported as number of OA lesions/total number of bones. Our results revealed that the presence of OA in marine species (dolphin and dugong) was 2.44% and 3.33%, respectively. In dolphins, the highest OA occurrence was on the left and right humeral trochlea, with 13.68% and 12.63%, respectively, while the highest number of OA lesions in dugongs was on the lumbar vertebrae (8.79%). No significant difference (P > 0.05) in the prevalence of OA between sexes in dolphins and dugongs was observed, but we found a significant difference (P < 0.05) in 24 bone locations of human bones, which had the highest OA prevalence (48.93%), followed by dogs (3.94%). In conclusion, OA can occur in marine mammals, similar to terrestrial mammals, even though their natural habitat is the ocean. © 2017 Anatomical Society.

Amazonian magnetostratigraphy: Dating the first pulse of the Great American Faunal Interchange

NASA Astrophysics Data System (ADS)

Campbell, Kenneth E., Jr.; Prothero, Donald R.; Romero-Pittman, Lidia; Hertel, Fritz; Rivera, Nadia

2010-04-01

The chronostratigraphy of the youngest Neogene deposits of the Amazon Basin, which comprise the Madre de Dios Formation in eastern Peru, remains unresolved. Although 40Ar/ 39Ar dates on two volcanic ashes from this formation in Peru provide critical baseline data points, stratigraphic correlations among scattered riverine outcrops in adjacent drainage basins remain problematic. To refine the chronostratigraphy of the Madre de Dios Formation, we report here the magnetostratigraphy of an outcrop on the Madre de Dios River in southeastern Peru. A total of 18 polarity zones was obtained in the ˜65-m-thick Cerro Colorado section, which we correlate to magnetozones Chrons C4Ar to C2An (9.5-3.0 Ma) based on the prior 40Ar/ 39Ar dates. These results confirm the late Miocene age of a gomphothere recovered from the Ipururo Formation, which underlies the late Miocene Ucayali Unconformity at the base of the Cerro Colorado outcrop. The results also support earlier interpretations of a late Miocene age for other fossils of North American mammals recovered from basal conglomeratic deposits of the Madre de Dios Formation immediately above the Ucayali Unconformity. These mammals include other gomphotheres, peccaries, and tapirs, and their presence in South America in the late Miocene is recognized as part of the first pulse of the Great American Faunal Interchange.

Mitochondrial Phylogenomics of Modern and Ancient Equids

PubMed Central

Vilstrup, Julia T.; Seguin-Orlando, Andaine; Stiller, Mathias; Ginolhac, Aurelien; Raghavan, Maanasa; Nielsen, Sandra C. A.; Weinstock, Jacobo; Froese, Duane; Vasiliev, Sergei K.; Ovodov, Nikolai D.; Clary, Joel; Helgen, Kristofer M.; Fleischer, Robert C.; Cooper, Alan; Shapiro, Beth; Orlando, Ludovic

2013-01-01

The genus Equus is richly represented in the fossil record, yet our understanding of taxonomic relationships within this genus remains limited. To estimate the phylogenetic relationships among modern horses, zebras, asses and donkeys, we generated the first data set including complete mitochondrial sequences from all seven extant lineages within the genus Equus. Bayesian and Maximum Likelihood phylogenetic inference confirms that zebras are monophyletic within the genus, and the Plains and Grevy’s zebras form a well-supported monophyletic group. Using ancient DNA techniques, we further characterize the complete mitochondrial genomes of three extinct equid lineages (the New World stilt-legged horses, NWSLH; the subgenus Sussemionus; and the Quagga, Equus quagga quagga). Comparisons with extant taxa confirm the NWSLH as being part of the caballines, and the Quagga and Plains zebras as being conspecific. However, the evolutionary relationships among the non-caballine lineages, including the now-extinct subgenus Sussemionus, remain unresolved, most likely due to extremely rapid radiation within this group. The closest living outgroups (rhinos and tapirs) were found to be too phylogenetically distant to calibrate reliable molecular clocks. Additional mitochondrial genome sequence data, including radiocarbon dated ancient equids, will be required before revisiting the exact timing of the lineage radiation leading up to modern equids, which for now were found to have possibly shared a common ancestor as far as up to 4 Million years ago (Mya). PMID:23437078

Straight from the Mouths of Horses and Tapirs: Using Fossil Teeth to Clarify How Ancient Environments Have Changed over Time

ERIC Educational Resources Information Center

DeSantis, Larisa

2009-01-01

Clarifying ancient environments millions of years ago is necessary to better understand how ecosystems change over time, providing insight as to the potential impacts of current global warming. This module engages middle school students in the scientific process, asking them to use tooth measurement to test the null hypothesis that horse and tapir…

The Potential Connectivity of Waterhole Networks and the Effectiveness of a Protected Area under Various Drought Scenarios

PubMed Central

O’Farrill, Georgina; Gauthier Schampaert, Kim; Rayfield, Bronwyn; Bodin, Örjan; Calmé, Sophie; Sengupta, Raja; Gonzalez, Andrew

2014-01-01

Landscape connectivity is considered a priority for ecosystem conservation because it may mitigate the synergistic effects of climate change and habitat loss. Climate change predictions suggest changes in precipitation regimes, which will affect the availability of water resources, with potential consequences for landscape connectivity. The Greater Calakmul Region of the Yucatan Peninsula (Mexico) has experienced a 16% decrease in precipitation over the last 50 years, which we hypothesise has affected water resource connectivity. We used a network model of connectivity, for three large endangered species (Baird’s tapir, white-lipped peccary and jaguar), to assess the effect of drought on waterhole availability and connectivity in a forested landscape inside and adjacent to the Calakmul Biosphere Reserve. We used reported travel distances and home ranges for our species to establish movement distances in our model. Specifically, we compared the effects of 10 drought scenarios on the number of waterholes (nodes) and the subsequent changes in network structure and node importance. Our analysis revealed that drought dramatically influenced spatial structure and potential connectivity of the network. Our results show that waterhole connectivity and suitable habitat (area surrounding waterholes) is lost faster inside than outside the reserve for all three study species, an outcome that may drive them outside the reserve boundaries. These results emphasize the need to assess how the variability in the availability of seasonal water resource may affect the viability of animal populations under current climate change inside and outside protected areas. PMID:24830392

The brazilian indigenous planetary-observatory

NASA Astrophysics Data System (ADS)

Afonso, G. B.

2003-08-01

We have performed observations of the sky alongside with the Indians of all Brazilian regions that made it possible localize many indigenous constellations. Some of these constellations are the same as the other South American Indians and Australian aborigines constellations. The scientific community does not have much of this information, which may be lost in one or two generations. In this work, we present a planetary-observatory that we have made in the Park of Science Newton Freire-Maia of Paraná State, in order to popularize the astronomical knowledge of the Brazilian Indians. The planetary consists, essentially, of a sphere of six meters in diameter and a projection cylinder of indigenous constellations. In this planetary we can identify a lot of constellations that we have gotten from the Brazilian Indians; for instance, the four seasonal constellations: the Tapir (spring), the Old Man (summer), the Deer (autumn) and the Rhea (winter). A two-meter height wooden staff that is posted vertically on the horizontal ground similar to a Gnomon and stones aligned with the cardinal points and the soltices directions constitutes the observatory. A stone circle of ten meters in diameter surrounds the staff and the aligned stones. During the day we observe the Sun apparent motions and at night the indigenous constellations. Due to the great community interest in our work, we are designing an itinerant indigenous planetary-observatory to be used in other cities mainly by indigenous and primary schools teachers.

The potential connectivity of waterhole networks and the effectiveness of a protected area under various drought scenarios.

PubMed

O'Farrill, Georgina; Gauthier Schampaert, Kim; Rayfield, Bronwyn; Bodin, Örjan; Calmé, Sophie; Sengupta, Raja; Gonzalez, Andrew

2014-01-01

Landscape connectivity is considered a priority for ecosystem conservation because it may mitigate the synergistic effects of climate change and habitat loss. Climate change predictions suggest changes in precipitation regimes, which will affect the availability of water resources, with potential consequences for landscape connectivity. The Greater Calakmul Region of the Yucatan Peninsula (Mexico) has experienced a 16% decrease in precipitation over the last 50 years, which we hypothesise has affected water resource connectivity. We used a network model of connectivity, for three large endangered species (Baird's tapir, white-lipped peccary and jaguar), to assess the effect of drought on waterhole availability and connectivity in a forested landscape inside and adjacent to the Calakmul Biosphere Reserve. We used reported travel distances and home ranges for our species to establish movement distances in our model. Specifically, we compared the effects of 10 drought scenarios on the number of waterholes (nodes) and the subsequent changes in network structure and node importance. Our analysis revealed that drought dramatically influenced spatial structure and potential connectivity of the network. Our results show that waterhole connectivity and suitable habitat (area surrounding waterholes) is lost faster inside than outside the reserve for all three study species, an outcome that may drive them outside the reserve boundaries. These results emphasize the need to assess how the variability in the availability of seasonal water resource may affect the viability of animal populations under current climate change inside and outside protected areas.

Geographic variation in host fish use and larval metamorphosis for the endangered dwarf wedgemussel

USGS Publications Warehouse

White, Barbara (St. John); Ferreri, C. Paola; Lellis, William A.; Wicklow, Barry J.; Cole, Jeffrey C.

2017-01-01

Host fishes play a crucial role in survival and dispersal of freshwater mussels (Unionoida), particularly rare unionids at conservation risk. Intraspecific variation in host use is not well understood for many mussels, including the endangered dwarf wedgemussel (Alasmidonta heterodon) in the USA.Host suitability of 33 fish species for dwarf wedgemussel glochidia (larvae) from the Delaware and Connecticut river basins was tested in laboratory experiments over 9 years. Relative suitability of three different populations of a single host fish, the tessellated darter (Etheostoma olmstedi), from locations in the Connecticut, Delaware, and Susquehanna river basins, was also tested.Connecticut River basin A. heterodon metamorphosed into juvenile mussels on tessellated darter, slimy sculpin (Cottus cognatus), and Atlantic salmon (Salmo salar) parr. Delaware River basin mussels metamorphosed using these three species, as well as brown trout (Salmo trutta), banded killifish (Fundulus diaphanus), mottled sculpin (Cottus bairdii), striped bass (Morone saxatilis), and shield darter (Percina peltata). Atlantic salmon, striped bass, and sculpins were highly effective hosts, frequently generating 5+ juveniles per fish (JPF) and metamorphosis success (MS; proportion of attaching larvae that successfully metamorphose) ≥ 0.4, and producing juveniles in repeated trials.In experiments on tessellated darters, mean JPF and MS values decreased as isolation between the mussel source (Connecticut River) and each fish source increased; mean JPF = 10.45, 6.85, 4.14, and mean MS = 0.50, 0.41, and 0.34 in Connecticut, Delaware, and Susquehanna river darters, respectively. Host suitability of individual darters was highly variable (JPF = 2–11; MS = 0.20–1.0).The results show that mussel–host fish compatibility in A. heterodon differs among Atlantic coastal rivers, and suggest that hosts including anadromous Atlantic salmon and striped bass may help sustain A. heterodon in parts of

Ectoparasitism on deep-sea fishes in the western North Atlantic: In situ observations from ROV surveys

USGS Publications Warehouse

Quattrini, Andrea; Demopoulos, Amanda W.J.

2016-01-01

A complete understanding of how parasites influence marine ecosystem functioning requires characterizing a broad range of parasite-host interactions while determining the effects of parasitism in a variety of habitats. In deep-sea fishes, the prevalence of parasitism remains poorly understood. Knowledge of ectoparasitism, in particular, is limited because collection methods often cause dislodgment of ectoparasites from their hosts. High-definition video collected during 43 remotely operated vehicle surveys (2013–2014) provided the opportunity to examine ectoparasitism on fishes across habitats (open slope, canyon, seamount, cold seep) and depths (494–4689 m) off the northeastern U.S., while providing high-resolution images and valuable observations of fish behavior. Only 9% (n = 125 individuals) of all observed fishes (25 species) were confirmed with ectoparasites, but higher percentages (∼33%) were observed for some of the most abundant fish species (e.g., Antimora rostrata). Ectoparasites included two copepod families (Lernaeopodidae, Sphyriidae) that infected four host species, two isopod families (Cymothoidae, Aegidae) that infected three host species, and one isopod family (Gnathiidae) that infected 19 host species. Hyperparasitism was also observed. As host diversity declined with depth, ectoparasite diversity declined; only gnathiids were observed at depths down to 3260 m. Thus, gnathiids appear to be the most successful group to infect a diversity of fishes across a broad depth range in the deep sea. For three dominant fishes (A. rostrata, Nezumia bairdii, Synaphobranchus spp.), the abundance and intensity of ectoparasitism peaked in different depths and habitats depending on the host species examined. Notably, gnathiid infections were most intense on A. rostrata, particularly in submarine canyons, suggesting that these habitats may increase ectoparasite infections. Although ectoparasitism is often overlooked in deep-sea benthic communities

Using DNA metabarcoding for simultaneous inference of common vampire bat diet and population structure.

PubMed

Bohmann, Kristine; Gopalakrishnan, Shyam; Nielsen, Martin; Nielsen, Luisa Dos Santos Bay; Jones, Gareth; Streicker, Daniel G; Gilbert, M Thomas P

2018-04-19

Metabarcoding diet analysis has become a valuable tool in animal ecology; however, co-amplified predator sequences are not generally used for anything other than to validate predator identity. Exemplified by the common vampire bat, we demonstrate the use of metabarcoding to infer predator population structure alongside diet assessments. Growing populations of common vampire bats impact human, livestock and wildlife health in Latin America through transmission of pathogens, such as lethal rabies viruses. Techniques to determine large-scale variation in vampire bat diet and bat population structure would empower locality- and species-specific projections of disease transmission risks. However, previously used methods are not cost-effective and efficient for large-scale applications. Using bloodmeal and faecal samples from common vampire bats from coastal, Andean and Amazonian regions of Peru, we showcase metabarcoding as a scalable tool to assess vampire bat population structure and feeding preferences. Dietary metabarcoding was highly effective, detecting vertebrate prey in 93.2% of the samples. Bats predominantly preyed on domestic animals, but fed on tapirs at one Amazonian site. In addition, we identified arthropods in 9.3% of samples, likely reflecting consumption of ectoparasites. Using the same data, we document mitochondrial geographic population structure in the common vampire bat in Peru. Such simultaneous inference of vampire bat diet and population structure can enable new insights into the interplay between vampire bat ecology and disease transmission risks. Importantly, the methodology can be incorporated into metabarcoding diet studies of other animals to couple information on diet and population structure. © 2018 The Authors. Molecular Ecology Resources Published by John Wiley & Sons Ltd.

Two new carnivores from an unusual late Tertiary forest biota in eastern North America.

PubMed

Wallace, Steven C; Wang, Xiaoming

2004-09-30

Late Cenozoic terrestrial fossil records of North America are biased by a predominance of mid-latitude deposits, mostly in the western half of the continent. Consequently, the biological history of eastern North America, including the eastern deciduous forest, remains largely hidden. Unfortunately, vertebrate fossil sites from this vast region are rare, and few pertain to the critically important late Tertiary period, during which intensified global climatic changes took place. Moreover, strong phylogenetic affinities between the flora of eastern North America and eastern Asia clearly demonstrate formerly contiguous connections, but disparity among shared genera (eastern Asia-eastern North America disjunction) implies significant periods of separation since at least the Miocene epoch. Lacustrine sediments deposited within a former sinkhole in the southern Appalachian Mountains provide a rare example of a late Miocene to early Pliocene terrestrial biota from a forested ecosystem. Here we show that the vertebrate remains contained within this deposit represent a unique combination of North American and Eurasian taxa. A new genus and species of the red (lesser) panda (Pristinailurus bristoli), the earliest and most primitive so far known, was recovered. Also among the fauna are a new species of Eurasian badger (Arctomeles dimolodontus) and the largest concentration of fossil tapirs ever recorded. Cladistical analyses of the two new carnivores strongly suggest immigration events that were earlier than and distinct from previous records, and that the close faunal affinities between eastern North America and eastern Asia in the late Tertiary period are consistent with the contemporaneous botanical record.

A High Density SNP Array for the Domestic Horse and Extant Perissodactyla: Utility for Association Mapping, Genetic Diversity, and Phylogeny Studies

PubMed Central

McCue, Molly E.; Bannasch, Danika L.; Petersen, Jessica L.; Gurr, Jessica; Bailey, Ernie; Binns, Matthew M.; Distl, Ottmar; Guérin, Gérard; Hasegawa, Telhisa; Hill, Emmeline W.; Leeb, Tosso; Lindgren, Gabriella; Penedo, M. Cecilia T.; Røed, Knut H.; Ryder, Oliver A.; Swinburne, June E.; Tozaki, Teruaki; Valberg, Stephanie J.; Vaudin, Mark; Lindblad-Toh, Kerstin

2012-01-01

An equine SNP genotyping array was developed and evaluated on a panel of samples representing 14 domestic horse breeds and 18 evolutionarily related species. More than 54,000 polymorphic SNPs provided an average inter-SNP spacing of ∼43 kb. The mean minor allele frequency across domestic horse breeds was 0.23, and the number of polymorphic SNPs within breeds ranged from 43,287 to 52,085. Genome-wide linkage disequilibrium (LD) in most breeds declined rapidly over the first 50–100 kb and reached background levels within 1–2 Mb. The extent of LD and the level of inbreeding were highest in the Thoroughbred and lowest in the Mongolian and Quarter Horse. Multidimensional scaling (MDS) analyses demonstrated the tight grouping of individuals within most breeds, close proximity of related breeds, and less tight grouping in admixed breeds. The close relationship between the Przewalski's Horse and the domestic horse was demonstrated by pair-wise genetic distance and MDS. Genotyping of other Perissodactyla (zebras, asses, tapirs, and rhinoceros) was variably successful, with call rates and the number of polymorphic loci varying across taxa. Parsimony analysis placed the modern horse as sister taxa to Equus przewalski. The utility of the SNP array in genome-wide association was confirmed by mapping the known recessive chestnut coat color locus (MC1R) and defining a conserved haplotype of ∼750 kb across all breeds. These results demonstrate the high quality of this SNP genotyping resource, its usefulness in diverse genome analyses of the horse, and potential use in related species. PMID:22253606

Randomized Controlled Trial of Daily Text Messages to Support Adherence to Preexposure Prophylaxis in Individuals at Risk for Human Immunodeficiency Virus: The TAPIR Study.

PubMed

Moore, David J; Jain, Sonia; Dubé, Michael P; Daar, Eric S; Sun, Xiaoying; Young, Jason; Corado, Katya; Ellorin, Eric; Milam, Joel; Collins, Deborah; Blumenthal, Jill; Best, Brookie M; Anderson, Peter; Haubrich, Richard; Morris, Sheldon R

2018-05-02

Adherence is critical for efficacy of tenofovir disoproxil fumarate/emtricitabine (FTC) as preexposure prophylaxis (PrEP). Between February 2013 and February 2016, 398 men who have sex with men and transgender women were randomized 1:1 to receive individualized texting for adherence building (iTAB) or standard care (SoC) for 48 weeks. The primary endpoint was dried blood spot (DBS) tenofovir diphosphate (TFV-DP) concentrations at both week 12 and the last on-drug visit of >719 fmol/punch (ie, adequate adherence). Secondary outcomes included DBS TFV-DP concentrations of >1246 fmol/punch (ie, near-perfect adherence) and plasma FTC >350 ng/mL (consistent with dosing within the past 24 hours). Concentrations >719 fmol/punch of TFV-DP were found in 88.6% of participants at week 12 and 82.5% at week 48. For the primary endpoint, the study arms did not differ (72.0% in iTAB and 69.2% in SoC; P > .05). For the secondary composite endpoint of >1246 fmol/punch the iTAB arm was superior to SoC (33.5% vs 24.8%; P = .06), reaching statistical significance when adjusting for age (odds ratio, 1.56 [95% confidence interval, 1.00-2.42]; P < .05). At week 48, iTAB was superior to SoC for near-perfect adherence (51.0% vs 37.4%; P = .02). At week 12, iTAB was superior to SoC for dosing in past 24 hours by plasma FTC (47.5% vs 33.3%; P = .007), but not at weeks 24, 36, and 48 (all P > .05). Automated text messaging is a low-burden tool that improves durability of near-perfect PrEP adherence. NCT01761643.

[Mammals of Zoque Forest, Mexico: richness, use and conservation].

PubMed

Lira-Torres, Iván; Galindo-Leal, Carlos; Briones-Salas, Miguel

2012-06-01

Zoque Forest is one of the richest and threatened regions in Southeastern Mexico, and for which few studies on mammal biology and use are available. Here we analyzed the conservation status of mammalian species according to Mexican and international laws, with an updated checklist of mammals in this forest, and some information on their use by some rural communities. Basic information was obtained from national and international collections and publications. A total of 42 fieldtrips, that followed conventional techniques, were conducted from 2003 through 2010, and some questionnaires to local hunters were applied. The mammalian fauna found in the area was composed of 149 species belonging to 99 genera and 30 families; these results support that the Zoque Forest is the richest in the number of mammalian species in Mexico. A total of 35 species were considered at risk by the Mexican National Law NOM-059-SEMARNAT-2010, and 21 species were found to be registered in the IUCN Red List or in CITES. Of the 40 species included in any of the lists, only the Baird's tapir, jaguar and white-lipped peccary were included in all three lists and 14 species were shared by the two of them. The main uses of mammals in order of importance are: 1) bushmeat, 2) pets, 3) skins, and 4) traditional medicine. Subsistence hunting and trade are unofficially allowed for farmers in this area. As for now, the region has healthy populations of a large number of mammals even though they have been used by local residents. However, since a considerable number of these species are listed under some criterion of threat, local authorities are called for more control.

Genome-wide identification and functional prediction of novel and fungi-responsive lincRNAs in Triticum aestivum.

PubMed

Zhang, Hong; Hu, Weiguo; Hao, Jilei; Lv, Shikai; Wang, Changyou; Tong, Wei; Wang, Yajuan; Wang, Yanzhen; Liu, Xinlun; Ji, Wanquan

2016-03-15

Stripe rust (Puccinia striiformis f. sp. tritici; Pst) and powdery mildew (Blumeria graminis f. sp. tritici; Bgt) are important diseases of wheat (Triticum aestivum) worldwide. Increasingly evidences suggest that long intergenic ncRNAs (lincRNAs) are developmentally regulated and play important roles in development and stress responses of plants. However, identification of lincRNAs in wheat is still limited comparing with functional gene expression. The transcriptome of the hexaploid wheat line N9134 inoculated with the Chinese Pst race CYR31 and Bgt race E09 at 1, 2, and 3 days post-inoculation was recapitulated to detect the lincRNAs. Here, 283 differential expressed lincRNAs were identified from 58218 putative lincRNAs, which account for 31.2% of transcriptome. Of which, 254 DE-LincRNAs responded to the Bgt stress, and 52 lincRNAs in Pst. Among them, 1328 SnRNP motifs (sm sites) were detected and showed RRU4-11RR sm site element and consensus RRU1-9VU1-7RR SnRNP motifs, where the total number of uridine was more than 3 but less than 11. Additionally, 101 DE-lincRNAs were predicted as targets of miRNA by psRNATarget, while 5 target mimics were identified using target mimicry search in TAPIR. Taken together, our findings indicate that the lincRNA of wheat responded to Bgt and Pst stress and played important roles in splicesome and inter-regulating with miRNA. The sm site of wheat showed a more complex construction than that in mammal and model plant. The mass sequence data generated in this study provide a cue for future functional and molecular research on wheat-fungus interactions.

Fat dynamics of arctic-nesting sandpipers during spring in mid-continental North America

USGS Publications Warehouse

Krapu, G.L.; Eldridge, J.L.; Gratto-Trevor, C. L.; Buhl, D.A.

2006-01-01

We measured fresh body mass, total body fat, and fat-free dry mass (FFDM) of three species of Arctic-nesting calidrid sandpipers (Baird's Sandpiper [Calidris bairdii], hereafter “BASA”; Semipalmated Sandpiper [C. pusilla], hereafter “SESA”; and White-rumped Sandpiper [C. fuscicollis], hereafter “WRSA”) during spring stopovers in the Prairie Pothole Region (PPR) of North Dakota, and evaluated the contribution of stored fat to (1) energy requirements for migration to their Arctic-breeding grounds and (2) nutrient needs for reproduction. All spring migrant WRSA (n = 124) and BASA (n = 111), and all but 2 of 99 SESA we collected were ≥2 years old. Male and female BASA migrated through North Dakota concurrently, male SESA averaged earlier than females, and WRSA males preceded females. Fat indices (ratio of fat to FFDM) of male and female SESA and WRSA averaged approximately twice those of male and female BASA. Total body fat of male and female BASA increased with date in spring 1980, but not in 1981; slopes were similar for both sexes each year. Male and female SESA arrived lean in 1980 and 1981, and total body fat increased with date in both years, with similar slopes for all combinations of sex and year. Male and female WRSA arrived lean in 1980–1981 and 1981, respectively, and total body fat increased with date, whereas females arrived with fat reserves already acquired in 1980. Interspecific and sex differences in migration schedules probably contributed to variation in fat storage patterns by affecting maintenance energy costs and food availability. Estimated flight ranges of BASA suggest that few could have met their energy needs for migration to the breeding grounds exclusively from fat stored by the time of departure from North Dakota. Estimated flight ranges of SESA and WRSA, along with fresh body masses of both species when live-trapped on or near their breeding grounds in northern Canada, suggest that major parts of both populations stored

Lake Ontario benthic prey fish assessment, 2015

USGS Publications Warehouse

Weidel, Brian C.; Walsh, Maureen; Holden, Jeremy P.; Connerton, Michael J.

2016-01-01

Benthic prey fishes are a critical component of the Lake Ontario food web, serving as energy vectors from benthic invertebrates to native and introduced piscivores. Since the late 1970’s, Lake Ontario benthic prey fish status was primarily assessed using bottom trawl observations confined to the lake’s south shore, in waters from 8 – 150 m (26 – 492 ft). In 2015, the Benthic Prey Fish Survey was cooperatively adjusted and expanded to address resource management information needs including lake-wide benthic prey fish population dynamics. Effort increased from 55 bottom trawl sites to 135 trawl sites collected in depths from 8 - 225m (26 – 738 ft). The spatial coverage of sampling was also expanded and occurred in all major lake basins. The resulting distribution of tow depths more closely matched the available lake depth distribution. The additional effort illustrated how previous surveys were underestimating lake-wide Deepwater Sculpin, Myoxocephalus thompsonii, abundance by not sampling in areas of highest density. We also found species richness was greater in the new sampling sites relative to the historic sites with 11 new fish species caught in the new sites including juvenile Round Whitefish, Prosopium cylindraceum, and Mottled sculpin, Cottus bairdii. Species-specific assessments found Slimy Sculpin, Cottus cognatus abundance increased slightly in 2015 relative to 2014, while Deepwater Sculpin and Round Goby, Neogobius melanostomus, dramatically increased in 2015, relative to 2014. The cooperative, lake-wide Benthic Prey Fish Survey expanded our understanding of benthic fish population dynamics and habitat use in Lake Ontario. This survey’s data and interpretations influence international resource management decision making, such as informing the Deepwater Sculpin conservation status and assessing the balance between sport fish consumption and prey fish populations. Additionally a significant Lake Ontario event occurred in May 2015 when a single

Low-Bandwidth and Non-Compute Intensive Remote Identification of Microbes from Raw Sequencing Reads

PubMed Central

Gautier, Laurent; Lund, Ole

2013-01-01

Cheap DNA sequencing may soon become routine not only for human genomes but also for practically anything requiring the identification of living organisms from their DNA: tracking of infectious agents, control of food products, bioreactors, or environmental samples. We propose a novel general approach to the analysis of sequencing data where a reference genome does not have to be specified. Using a distributed architecture we are able to query a remote server for hints about what the reference might be, transferring a relatively small amount of data. Our system consists of a server with known reference DNA indexed, and a client with raw sequencing reads. The client sends a sample of unidentified reads, and in return receives a list of matching references. Sequences for the references can be retrieved and used for exhaustive computation on the reads, such as alignment. To demonstrate this approach we have implemented a web server, indexing tens of thousands of publicly available genomes and genomic regions from various organisms and returning lists of matching hits from query sequencing reads. We have also implemented two clients: one running in a web browser, and one as a python script. Both are able to handle a large number of sequencing reads and from portable devices (the browser-based running on a tablet), perform its task within seconds, and consume an amount of bandwidth compatible with mobile broadband networks. Such client-server approaches could develop in the future, allowing a fully automated processing of sequencing data and routine instant quality check of sequencing runs from desktop sequencers. A web access is available at http://tapir.cbs.dtu.dk. The source code for a python command-line client, a server, and supplementary data are available at http://bit.ly/1aURxkc. PMID:24391826

Low-bandwidth and non-compute intensive remote identification of microbes from raw sequencing reads.

PubMed

Gautier, Laurent; Lund, Ole

2013-01-01

Cheap DNA sequencing may soon become routine not only for human genomes but also for practically anything requiring the identification of living organisms from their DNA: tracking of infectious agents, control of food products, bioreactors, or environmental samples. We propose a novel general approach to the analysis of sequencing data where a reference genome does not have to be specified. Using a distributed architecture we are able to query a remote server for hints about what the reference might be, transferring a relatively small amount of data. Our system consists of a server with known reference DNA indexed, and a client with raw sequencing reads. The client sends a sample of unidentified reads, and in return receives a list of matching references. Sequences for the references can be retrieved and used for exhaustive computation on the reads, such as alignment. To demonstrate this approach we have implemented a web server, indexing tens of thousands of publicly available genomes and genomic regions from various organisms and returning lists of matching hits from query sequencing reads. We have also implemented two clients: one running in a web browser, and one as a python script. Both are able to handle a large number of sequencing reads and from portable devices (the browser-based running on a tablet), perform its task within seconds, and consume an amount of bandwidth compatible with mobile broadband networks. Such client-server approaches could develop in the future, allowing a fully automated processing of sequencing data and routine instant quality check of sequencing runs from desktop sequencers. A web access is available at http://tapir.cbs.dtu.dk. The source code for a python command-line client, a server, and supplementary data are available at http://bit.ly/1aURxkc.

A two-column formalism for time-dependent modelling of stellar convection. I. Description of the method

NASA Astrophysics Data System (ADS)

Stökl, A.

2008-11-01

Context: In spite of all the advances in multi-dimensional hydrodynamics, investigations of stellar evolution and stellar pulsations still depend on one-dimensional computations. This paper devises an alternative to the mixing-length theory or turbulence models usually adopted in modelling convective transport in such studies. Aims: The present work attempts to develop a time-dependent description of convection, which reflects the essential physics of convection and that is only moderately dependent on numerical parameters and far less time consuming than existing multi-dimensional hydrodynamics computations. Methods: Assuming that the most extensive convective patterns generate the majority of convective transport, the convective velocity field is described using two parallel, radial columns to represent up- and downstream flows. Horizontal exchange, in the form of fluid flow and radiation, over their connecting interface couples the two columns and allows a simple circulating motion. The main parameters of this convective description have straightforward geometrical meanings, namely the diameter of the columns (corresponding to the size of the convective cells) and the ratio of the cross-section between up- and downdrafts. For this geometrical setup, the time-dependent solution of the equations of radiation hydrodynamics is computed from an implicit scheme that has the advantage of being unaffected by the Courant-Friedrichs-Lewy time-step limit. This implementation is part of the TAPIR-Code (short for The adaptive, implicit RHD-Code). Results: To demonstrate the approach, results for convection zones in Cepheids are presented. The convective energy transport and convective velocities agree with expectations for Cepheids and the scheme reproduces both the kinetic energy flux and convective overshoot. A study of the parameter influence shows that the type of solution derived for these stars is in fact fairly robust with respect to the constitutive numerical

Quantification of blood-to-brain transfer rate in multiple sclerosis

PubMed Central

Taheri, Saeid; Rosenberg, Gary A.; Ford, Corey

2016-01-01

Blood–brain barrier (BBB) disruption visualized in lesions by MRI is a major biomarker of disease activity in multiple sclerosis (MS). However, in MS, destruction occurs to a variable extent in lesions as well as in gray matter (GM) and in the normal appearing white matter (NAWM). A method to quantify the BBB disruption in lesions as well as in non-lesion areas would be useful for assessment of MS progression and treatments. The objective of this study was to quantify the BBB transfer rate (Ki) in WM lesions, in the NAWM, and in the full-brain of MS patients. Thirteen MS patients with active lesions and 10 healthy controls with age and gender matching were recruited for full-brain and WM Ki studies. Dynamic contrast-enhanced MRI (DCEMRI) scans were conducted using T1 mapping with partial inversion recovery (TAPIR), a fast T1 mapping technique, following administration of a quarter-dose of the contrast agent Gadolinium-DTPA (Gd-DTPA). The Patlak modeling technique was used to derive a voxel-based map of Ki. In all patients contrast-enhanced lesions, quantified by Ki maps, were observed. Compared with controls, patients with MS exhibited an increase in mean Ki of the full-brain (P-value<0.05) but no significant difference in mean Ki of NAWM. The identified increase in full-brain Ki of MS patients suggests a global vascular involvement associated with MS disease. The lack of observed significant decrease in Ki in NAWM suggests lower involvement of WM vasculature than full-brain vasculature in MS. Ki maps constructed from time series data acquired by DCEMRI provide additional information about BBB that could be used for evaluation of vascular involvement in MS and monitoring treatment effectiveness. PMID:25877634

Analysis of complete mitochondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution

PubMed Central

Willerslev, Eske; Gilbert, M Thomas P; Binladen, Jonas; Ho, Simon YW; Campos, Paula F; Ratan, Aakrosh; Tomsho, Lynn P; da Fonseca, Rute R; Sher, Andrei; Kuznetsova, Tatanya V; Nowak-Kemp, Malgosia; Roth, Terri L; Miller, Webb; Schuster, Stephan C

2009-01-01

Background The scientific literature contains many examples where DNA sequence analyses have been used to provide definitive answers to phylogenetic problems that traditional (non-DNA based) approaches alone have failed to resolve. One notable example concerns the rhinoceroses, a group for which several contradictory phylogenies were proposed on the basis of morphology, then apparently resolved using mitochondrial DNA fragments. Results In this study we report the first complete mitochondrial genome sequences of the extinct ice-age woolly rhinoceros (Coelodonta antiquitatis), and the threatened Javan (Rhinoceros sondaicus), Sumatran (Dicerorhinus sumatrensis), and black (Diceros bicornis) rhinoceroses. In combination with the previously published mitochondrial genomes of the white (Ceratotherium simum) and Indian (Rhinoceros unicornis) rhinoceroses, this data set putatively enables reconstruction of the rhinoceros phylogeny. While the six species cluster into three strongly supported sister-pairings: (i) The black/white, (ii) the woolly/Sumatran, and (iii) the Javan/Indian, resolution of the higher-level relationships has no statistical support. The phylogenetic signal from individual genes is highly diffuse, with mixed topological support from different genes. Furthermore, the choice of outgroup (horse vs tapir) has considerable effect on reconstruction of the phylogeny. The lack of resolution is suggestive of a hard polytomy at the base of crown-group Rhinocerotidae, and this is supported by an investigation of the relative branch lengths. Conclusion Satisfactory resolution of the rhinoceros phylogeny may not be achievable without additional analyses of substantial amounts of nuclear DNA. This study provides a compelling demonstration that, in spite of substantial sequence length, there are significant limitations with single-locus phylogenetics. We expect further examples of this to appear as next-generation, large-scale sequencing of complete mitochondrial

Natural killer cell receptor genes in the family Equidae: not only Ly49.

PubMed

Futas, Jan; Horin, Petr

2013-01-01

Natural killer (NK) cells have important functions in immunity. NK recognition in mammals can be mediated through killer cell immunoglobulin-like receptors (KIR) and/or killer cell lectin-like Ly49 receptors. Genes encoding highly variable NK cell receptors (NKR) represent rapidly evolving genomic regions. No single conservative model of NKR genes was observed in mammals. Single-copy low polymorphic NKR genes present in one mammalian species may expand into highly polymorphic multigene families in other species. In contrast to other non-rodent mammals, multiple Ly49-like genes appear to exist in the horse, while no functional KIR genes were observed in this species. In this study, Ly49 and KIR were sought and their evolution was characterized in the entire family Equidae. Genomic sequences retrieved showed the presence of at least five highly conserved polymorphic Ly49 genes in horses, asses and zebras. These findings confirmed that the expansion of Ly49 occurred in the entire family. Several KIR-like sequences were also identified in the genome of Equids. Besides a previously identified non-functional KIR-Immunoglobulin-like transcript fusion gene (KIR-ILTA) and two putative pseudogenes, a KIR3DL-like sequence was analyzed. In contrast to previous observations made in the horse, the KIR3DL sequence, genomic organization and mRNA expression suggest that all Equids might produce a functional KIR receptor protein molecule with a single non-mutated immune tyrosine-based inhibition motif (ITIM) domain. No evidence for positive selection in the KIR3DL gene was found. Phylogenetic analysis including rhinoceros and tapir genomic DNA and deduced amino acid KIR-related sequences showed differences between families and even between species within the order Perissodactyla. The results suggest that the order Perissodactyla and its family Equidae with expanded Ly49 genes and with a potentially functional KIR gene may represent an interesting model for evolutionary biology of

Measuring local depletion of terrestrial game vertebrates by central-place hunters in rural Amazonia

PubMed Central

Peres, Carlos A.; Costa, Hugo C. M.

2017-01-01

The degree to which terrestrial vertebrate populations are depleted in tropical forests occupied by human communities has been the subject of an intense polarising debate that has important conservation implications. Conservation ecologists and practitioners are divided over the extent to which community-based subsistence offtake is compatible with ecologically functional populations of tropical forest game species. To quantify depletion envelopes of forest vertebrates around human communities, we deployed a total of 383 camera trap stations and 78 quantitative interviews to survey the peri-community areas controlled by 60 semi-subsistence communities over a combined area of over 3.2 million hectares in the Médio Juruá and Uatumã regions of Central-Western Brazilian Amazonia. Our results largely conform with prior evidence that hunting large-bodied vertebrates reduces wildlife populations near settlements, such that they are only found at a distance to settlements where they are hunted less frequently. Camera trap data suggest that a select few harvest-sensitive species, including lowland tapir, are either repelled or depleted by human communities. Nocturnal and cathemeral species were detected relatively more frequently in disturbed areas close to communities, but individual species did not necessarily shift their activity patterns. Group biomass of all species was depressed in the wider neighbourhood of urban areas rather than communities. Interview data suggest that species traits, especially group size and body mass, mediate these relationships. Large-bodied, large-group-living species are detected farther from communities as reported by experienced informants. Long-established communities in our study regions have not “emptied” the surrounding forest. Low human population density and low hunting offtake due to abundant sources of alternative aquatic protein, suggest that these communities represent a best-case scenario for sustainable hunting of

Line Transect Surveys Underdetect Terrestrial Mammals: Implications for the Sustainability of Subsistence Hunting

PubMed Central

Levi, Taal; Oliveira, Luiz F. B.; Luzar, Jeffrey B.; Overman, Han; Read, Jane M.

2016-01-01

Conservation of Neotropical game species must take into account the livelihood and food security needs of local human populations. Hunting management decisions should therefore rely on abundance and distribution data that are as representative as possible of true population sizes and dynamics. We simultaneously applied a commonly used encounter-based method and an infrequently used sign-based method to estimate hunted vertebrate abundance in a 48,000-km2 indigenous landscape in southern Guyana. Diurnal direct encounter data collected during three years along 216, four-kilometer -long transects consistently under-detected many diurnal and nocturnal mammal species readily detected through sign. Of 32 species analyzed, 31 were detected by both methods; however, encounters did not detect one and under-detected another 12 of the most heavily hunted species relative to sign, while sign under-detected 12 never or rarely collected species relative to encounters. The six most important game animals in the region, all ungulates, were not encountered at 11–40% of village and control sites or on 29–72% of transects where they were detected by sign. Using the sign methodology, we find that tapirs, one of the terrestrial vertebrates considered most sensitive to overexploitation, are present at many sites where they were never visually detected during distance sampling. We find that this is true for many other species as well. These high rates of under-detection suggest that behavioral changes in hunted populations may affect apparent occurrence and abundance of these populations. Accumulation curves (detection of species on transects) were much steeper for sign for 12 of 16 hunted species than for encounters, but that pattern was reversed for 12 of 16 species unhunted in our area. We conclude that collection of sign data is an efficient and effective method of monitoring hunted vertebrate populations that complements encounter and camera-trapping methods in areas impacted by

Rewilding the tropics, and other conservation translocations strategies in the tropical Asia-Pacific region

PubMed Central

Louys, Julien; Corlett, Richard T; Price, Gilbert J; Hawkins, Stuart; Piper, Philip J

2014-01-01

Alarm over the prospects for survival of species in a rapidly changing world has encouraged discussion of translocation conservation strategies that move beyond the focus of ‘at-risk’ species. These approaches consider larger spatial and temporal scales than customary, with the aim of recreating functioning ecosystems through a combination of large-scale ecological restoration and species introductions. The term ‘rewilding’ has come to apply to this large-scale ecosystem restoration program. While reintroductions of species within their historical ranges have become standard conservation tools, introductions within known paleontological ranges—but outside historical ranges—are more controversial, as is the use of taxon substitutions for extinct species. Here, we consider possible conservation translocations for nine large-bodied taxa in tropical Asia-Pacific. We consider the entire spectrum of conservation translocation strategies as defined by the IUCN in addition to rewilding. The taxa considered are spread across diverse taxonomic and ecological spectra and all are listed as ‘endangered’ or ‘critically endangered’ by the IUCN in our region of study. They all have a written and fossil record that is sufficient to assess past changes in range, as well as ecological and environmental preferences, and the reasons for their decline, and they have all suffered massive range restrictions since the late Pleistocene. General principles, problems, and benefits of translocation strategies are reviewed as case studies. These allowed us to develop a conservation translocation matrix, with taxa scored for risk, benefit, and feasibility. Comparisons between taxa across this matrix indicated that orangutans, tapirs, Tasmanian devils, and perhaps tortoises are the most viable taxa for translocations. However, overall the case studies revealed a need for more data and research for all taxa, and their ecological and environmental needs. Rewilding the Asian

Time-Dependent Simulations of the Formation and Evolution of Disk-Accreted Atmospheres Around Terrestrial Planets

NASA Astrophysics Data System (ADS)

Stoekl, Alexander; Dorfi, Ernst

2014-05-01

In the early, embedded phase of evolution of terrestrial planets, the planetary core accumulates gas from the circumstellar disk into a planetary envelope. This atmosphere is very significant for the further thermal evolution of the planet by forming an insulation around the rocky core. The disk-captured envelope is also the staring point for the atmospheric evolution where the atmosphere is modified by outgassing from the planetary core and atmospheric mass loss once the planet is exposed to the radiation field of the host star. The final amount of persistent atmosphere around the evolved planet very much characterizes the planet and is a key criterion for habitability. The established way to study disk accumulated atmospheres are hydrostatic models, even though in many cases the assumption of stationarity is unlikely to be fulfilled. We present, for the first time, time-dependent radiation hydrodynamics simulations of the accumulation process and the interaction between the disk-nebula gas and the planetary core. The calculations were performed with the TAPIR-Code (short for The adaptive, implicit RHD-Code) in spherical symmetry solving the equations of hydrodynamics, gray radiative transport, and convective energy transport. The models range from the surface of the solid core up to the Hill radius where the planetary envelope merges into the surrounding protoplanetary disk. Our results show that the time-scale of gas capturing and atmospheric growth strongly depends on the mass of the solid core. The amount of atmosphere accumulated during the lifetime of the protoplanetary disk (typically a few Myr) varies accordingly with the mass of the planet. Thus, a core with Mars-mass will end up with about 10 bar of atmosphere while for an Earth-mass core, the surface pressure reaches several 1000 bar. Even larger planets with several Earth masses quickly capture massive envelopes which in turn become gravitationally unstable leading to runaway accretion and the eventual

Measuring local depletion of terrestrial game vertebrates by central-place hunters in rural Amazonia.

PubMed

Abrahams, Mark I; Peres, Carlos A; Costa, Hugo C M

2017-01-01

The degree to which terrestrial vertebrate populations are depleted in tropical forests occupied by human communities has been the subject of an intense polarising debate that has important conservation implications. Conservation ecologists and practitioners are divided over the extent to which community-based subsistence offtake is compatible with ecologically functional populations of tropical forest game species. To quantify depletion envelopes of forest vertebrates around human communities, we deployed a total of 383 camera trap stations and 78 quantitative interviews to survey the peri-community areas controlled by 60 semi-subsistence communities over a combined area of over 3.2 million hectares in the Médio Juruá and Uatumã regions of Central-Western Brazilian Amazonia. Our results largely conform with prior evidence that hunting large-bodied vertebrates reduces wildlife populations near settlements, such that they are only found at a distance to settlements where they are hunted less frequently. Camera trap data suggest that a select few harvest-sensitive species, including lowland tapir, are either repelled or depleted by human communities. Nocturnal and cathemeral species were detected relatively more frequently in disturbed areas close to communities, but individual species did not necessarily shift their activity patterns. Group biomass of all species was depressed in the wider neighbourhood of urban areas rather than communities. Interview data suggest that species traits, especially group size and body mass, mediate these relationships. Large-bodied, large-group-living species are detected farther from communities as reported by experienced informants. Long-established communities in our study regions have not "emptied" the surrounding forest. Low human population density and low hunting offtake due to abundant sources of alternative aquatic protein, suggest that these communities represent a best-case scenario for sustainable hunting of wildlife

Natural Killer Cell Receptor Genes in the Family Equidae: Not only Ly49

PubMed Central

Futas, Jan; Horin, Petr

2013-01-01

Natural killer (NK) cells have important functions in immunity. NK recognition in mammals can be mediated through killer cell immunoglobulin-like receptors (KIR) and/or killer cell lectin-like Ly49 receptors. Genes encoding highly variable NK cell receptors (NKR) represent rapidly evolving genomic regions. No single conservative model of NKR genes was observed in mammals. Single-copy low polymorphic NKR genes present in one mammalian species may expand into highly polymorphic multigene families in other species. In contrast to other non-rodent mammals, multiple Ly49-like genes appear to exist in the horse, while no functional KIR genes were observed in this species. In this study, Ly49 and KIR were sought and their evolution was characterized in the entire family Equidae. Genomic sequences retrieved showed the presence of at least five highly conserved polymorphic Ly49 genes in horses, asses and zebras. These findings confirmed that the expansion of Ly49 occurred in the entire family. Several KIR-like sequences were also identified in the genome of Equids. Besides a previously identified non-functional KIR-Immunoglobulin-like transcript fusion gene (KIR-ILTA) and two putative pseudogenes, a KIR3DL-like sequence was analyzed. In contrast to previous observations made in the horse, the KIR3DL sequence, genomic organization and mRNA expression suggest that all Equids might produce a functional KIR receptor protein molecule with a single non-mutated immune tyrosine-based inhibition motif (ITIM) domain. No evidence for positive selection in the KIR3DL gene was found. Phylogenetic analysis including rhinoceros and tapir genomic DNA and deduced amino acid KIR-related sequences showed differences between families and even between species within the order Perissodactyla. The results suggest that the order Perissodactyla and its family Equidae with expanded Ly49 genes and with a potentially functional KIR gene may represent an interesting model for evolutionary biology of

Tracing the pathways of neotropical migratory shorebirds using stable isotopes: a pilot study.

PubMed

Farmer, A; Rye, R; Landis, G; Bern, C; Kester, C; Ridley, I

2003-09-01

We evaluated the potential use of stable isotopes to establish linkages between the wintering grounds and the breeding grounds of the Pectoral Sandpiper (Calidris melanotos), the White-rumped Sandpiper (Calidris fuscicollis), the Baird's Sandpiper (Calidris bairdii), and other Neotropical migratory shorebird species (e.g., Tringa spp.). These species molt their flight feathers on the wintering grounds and hence their flight feathers carry chemical signatures that are characteristic of their winter habitat. The objective of our pilot study was to assess the feasibility of identifying the winter origin of individual birds by: (1) collecting shorebird flight feathers from several widely separated Argentine sites and analyzing these for a suite of stable isotopes; and 2) analyzing the deuterium and 18O isotope data that were available from precipitation measurement stations in Argentina. Isotopic ratios (delta13C, delta15N and delta34S) of flight feathers were significantly different among three widely separated sites in Argentina during January 2001. In terms of relative importance in separating the sites, delta34S was most important, followed by delta15N, and then delta13C. In the complete discriminant analysis, the classification function correctly predicted group membership in 85% of the cases (jackknifed classification matrix). In a stepwise analysis delta13C was dropped from the solution, and site membership was correctly predicted in 92% of cases (jackknifed matrix). Analysis of precipitation data showed that both deltaD and delta18O were significantly related to both latitude and longitude on a countrywide scale (p < 0.001). Other variables, month, altitude, explained little additional variation in these isotope ratios. Several issues were identified that will likely constrain the degree of accuracy one can expect in predicting the geographic origin of birds from Argentina. There was unexplained variation in isotope ratios within and among the different wing

Tracing the pathways of Neotropical migratory shorebirds using stable isotopes: A pilot study

USGS Publications Warehouse

Farmer, A.H.; Rye, R.; Landis, G.; Bern, C.; Kester, C.; Ridley, I.

2003-01-01

We evaluated the potential use of stable isotopes to establish linkages between the wintering grounds and the breeding grounds of the Pectoral Sandpiper (Calidris melanotos), the White-rumped Sandpiper (Calidris fuscicollis), the Baird's Sandpiper (Calidris bairdii), and other Neotropical migratory shorebird species (e.g., Tringa spp.). These species molt their flight feathers on the wintering grounds and hence their flight feathers carry chemical signatures that are characteristic of their winter habitat. The objective of our pilot study was to assess the feasibility of identifying the winter origin of individual birds by: (1) collecting shorebird flight feathers from several widely separated Argentine sites and analyzing these for a suite of stable isotopes; and (2) analyzing the deuterium and 18O isotope data that were available from precipitation measurement stations in Argentina. Isotopic ratios (δ13C, δ15N and δ34S) of flight feathers were significantly different among three widely separated sites in Argentina during January 2001. In terms of relative importance in separating the sites, δ34S was most important, followed by δ15N, and then δ13C. In the complete discriminant analysis, the classification function correctly predicted group membership in 85% of the cases (jackknifed classification matrix). In a stepwise analysis δ13C was dropped from the solution, and site membership was correctly predicted in 92% of cases (jackknifed matrix). Analysis of precipitation data showed that both δD and δ18O were significantly related to both latitude and longitude on a countrywide scale (p < 0.001). Other variables, month, altitude, explained little additional variation in these isotope ratios. Several issues were identified that will likely constrain the degree of accuracy one can expect in predicting the geographic origin of birds from Argentina. There was unexplained variation in isotope ratios within and among the different wing feathers from individual

Middle Pleistocene protein sequences from the rhinoceros genus Stephanorhinus and the phylogeny of extant and extinct Middle/Late Pleistocene Rhinocerotidae

PubMed Central

Smith, Geoff M.; Hutson, Jarod M.; Kindler, Lutz; Garcia-Moreno, Alejandro; Villaluenga, Aritza; Turner, Elaine

2017-01-01

Background Ancient protein sequences are increasingly used to elucidate the phylogenetic relationships between extinct and extant mammalian taxa. Here, we apply these recent developments to Middle Pleistocene bone specimens of the rhinoceros genus Stephanorhinus. No biomolecular sequence data is currently available for this genus, leaving phylogenetic hypotheses on its evolutionary relationships to extant and extinct rhinoceroses untested. Furthermore, recent phylogenies based on Rhinocerotidae (partial or complete) mitochondrial DNA sequences differ in the placement of the Sumatran rhinoceros (Dicerorhinus sumatrensis). Therefore, studies utilising ancient protein sequences from Middle Pleistocene contexts have the potential to provide further insights into the phylogenetic relationships between extant and extinct species, including Stephanorhinus and Dicerorhinus. Methods ZooMS screening (zooarchaeology by mass spectrometry) was performed on several Late and Middle Pleistocene specimens from the genus Stephanorhinus, subsequently followed by liquid chromatography-tandem mass spectrometry (LC-MS/MS) to obtain ancient protein sequences from a Middle Pleistocene Stephanorhinus specimen. We performed parallel analysis on a Late Pleistocene woolly rhinoceros specimen and extant species of rhinoceroses, resulting in the availability of protein sequence data for five extant species and two extinct genera. Phylogenetic analysis additionally included all extant Perissodactyla genera (Equus, Tapirus), and was conducted using Bayesian (MrBayes) and maximum-likelihood (RAxML) methods. Results Various ancient proteins were identified in both the Middle and Late Pleistocene rhinoceros samples. Protein degradation and proteome complexity are consistent with an endogenous origin of the identified proteins. Phylogenetic analysis of informative proteins resolved the Perissodactyla phylogeny in agreement with previous studies in regards to the placement of the families Equidae

Middle Pleistocene protein sequences from the rhinoceros genus Stephanorhinus and the phylogeny of extant and extinct Middle/Late Pleistocene Rhinocerotidae.

PubMed

Welker, Frido; Smith, Geoff M; Hutson, Jarod M; Kindler, Lutz; Garcia-Moreno, Alejandro; Villaluenga, Aritza; Turner, Elaine; Gaudzinski-Windheuser, Sabine

2017-01-01

Ancient protein sequences are increasingly used to elucidate the phylogenetic relationships between extinct and extant mammalian taxa. Here, we apply these recent developments to Middle Pleistocene bone specimens of the rhinoceros genus Stephanorhinus . No biomolecular sequence data is currently available for this genus, leaving phylogenetic hypotheses on its evolutionary relationships to extant and extinct rhinoceroses untested. Furthermore, recent phylogenies based on Rhinocerotidae (partial or complete) mitochondrial DNA sequences differ in the placement of the Sumatran rhinoceros ( Dicerorhinus sumatrensis ). Therefore, studies utilising ancient protein sequences from Middle Pleistocene contexts have the potential to provide further insights into the phylogenetic relationships between extant and extinct species, including Stephanorhinus and Dicerorhinus . ZooMS screening (zooarchaeology by mass spectrometry) was performed on several Late and Middle Pleistocene specimens from the genus Stephanorhinus , subsequently followed by liquid chromatography-tandem mass spectrometry (LC-MS/MS) to obtain ancient protein sequences from a Middle Pleistocene Stephanorhinus specimen. We performed parallel analysis on a Late Pleistocene woolly rhinoceros specimen and extant species of rhinoceroses, resulting in the availability of protein sequence data for five extant species and two extinct genera. Phylogenetic analysis additionally included all extant Perissodactyla genera ( Equus , Tapirus ), and was conducted using Bayesian (MrBayes) and maximum-likelihood (RAxML) methods. Various ancient proteins were identified in both the Middle and Late Pleistocene rhinoceros samples. Protein degradation and proteome complexity are consistent with an endogenous origin of the identified proteins. Phylogenetic analysis of informative proteins resolved the Perissodactyla phylogeny in agreement with previous studies in regards to the placement of the families Equidae, Tapiridae, and

A model for the Holocene extinction of the mammal megafauna in Ecuador

NASA Astrophysics Data System (ADS)

Ficcarelli, G.; Coltorti, M.; Moreno-Espinosa, M.; Pieruccini, P. L.; Rook, L.; Torre, D.

2003-03-01

. Vegetation cover in the area of Santa Elena should have been extensive, and even more so in the Guayas and Guayabamba valleys. The newly densely vegetated areas, and fluvial barriers, transformed the refugia into lethal traps for large animals already under biological stress, such as were mastodons, ground sloths and equids. Within the megafauna, only tapirs and artiodactyla (Cervidae and Camelidae) survived. In our opinion, the most suitable model to justify the great crisis of the mammal megafauna at the Pleistocene/Holocene transition, also in areas out of Ecuador, must be mainly based on the three parameters: high aridity, high humidity and geographic factors.

Agent-based modeling for the landuse change of hunter-gather societies and the impacts on biodiversity in Guyana

NASA Astrophysics Data System (ADS)

Iwamura, T.; Fragoso, J.; Lambin, E.

2012-12-01

, Tapirs, Capybara exist but very low. This finding is well aligned with the hunting dataset - Agouti/Paca consists 27% of total hunting. Based on our simulation, it seems the dominance of Agouti/Paca among hunted animals shown in the field data can be explained solely by their high carrying capacity against human extraction (population density of the Paca/Agouti = 60 per square km, whereas other animals ranges 0.63 to 7). When we incorporate agriculture, the "rodentation" of the animal population toward Agouti/Paca becomes more obvious. This simulation shows the interactions of people and animals through land change and hunting, which were observed in our fields.

Molt and aging criteria for four North American grassland passerines

USGS Publications Warehouse

Pyle, Peter; Jones, Stephanie L.; Ruth, Janet M.

2008-01-01

Prairie and grassland habitats in central and western North America have declined substantially since settlement by Europeans (Knopf 1994) and many of the birds and other organisms that inhabit North American grasslands have experienced steep declines (Peterjohn and Sauer 1999; Johnson and Igl 1997; Sauer, Hines, and Fallon 2007). The species addressed here, Sprague’s Pipit (Anthus spragueii), Grasshopper (Ammodramus savannarum) and Baird’s (A. bairdii) sparrows, and Chestnut-collared Longspurs (Calcarius ornatus), are grassland birds that are of special conservation concern throughout their ranges due to declining populations and the loss of the specific grassland habitats required on both their breeding and wintering ranges (Knopf 1994, Davis and Sealy 1998, Davis 2003, Davis 2004, Jones and Dieni 2007). Population-trend data on grassland birds, while clearly showing declines, provides no information on the causes of population declines. Without demographic information (i.e., productivity and survivorship), there are no means to determine when in their life cycle the problems that are creating these declines are occurring, or to determine to what extent population trends are driven by factors that affect birth rates, death rates, or both (DeSante 1995). For migratory birds, population declines may be driven by factors on breeding grounds, during migration, and/or on wintering grounds. Lack of data on productivity and survivorship thus impedes the formulation of effective management and conservation strategies to reverse population declines (DeSante 1992). Furthermore, if deficiencies in survivorship are revealed, management strategies may need to address habitats on both breeding and non-breeding grounds, as well as along migratory pathways. One technique that helps inform management strategies is the biochemical analysis of isotopes and genetic markers, from the sampling of individual feathers from live birds (Smith et al. 2003, Pérez and Hobson 2006

Smoke and fires from Sumatra

NASA Image and Video Library

2014-03-21

Fires burning in Sumatra continued to pour smoke over the region in mid-March, 2014, bringing air quality to dangerous levels. The Moderate Resolution Imaging Spectroradiometer (MODIS) aboard NASA’s Aqua satellite captured this true-color image of the smoke and haze across the region on March 12. According to the Jakarta Post, on March 12 the Sumatra Environmental Laboratory reported that 10 of 12 spots in Riau had an air quality of index above 300 on the Pollutant Standards Index (PSI), which is considered hazardous. Hazardous air quality had been recorded in some of the locations for 11 consecutive days. The province of Riau is located in the central eastern coast of Sumatra and, in this image, is hidden under thick bands of light gray smoke. Intense fires, reported as deliberately set to clear land, were burning in the Giam Siak Kecil-Bukit Batu biosphere reserve. This reserve contains over 700,000 hectares of sensitive peat forest that sustains a wide range of plant and animal species, including the Sumatra tiger, elephant, tapir and sun bear. With visibility as low as 500 m (1640 ft), 58 flights were cancelled in Pekanbaru, the capital of Riau province, on March 11. Schools were closed across the region, with 43,000 students affected in Payakumbuh, West Sumatra. On March 14, Selangor, Malaysia closed 203 schools, affecting 211,700 pupils, until the air quality improved. On that same day, according to Riau Health Agency, more than 55,000 residents in the province were suffering from haze-related illnesses, including acute respiratory infections, pneumonia and skin and eye irritation. Poor air quality not only affected transportation, human health and the ecosystem, but has had significant economic impacts. On March 17, Reuters reported that the poor air quality had forced Chevron, the country’s biggest oil producer, to close hundreds of its wells. As a result, Indonesia’s crude oil output dropped to 790,000 barrels per day (bpd) – significantly lower

Modelling of EISS GPR's electrical and magnetic antennas for ExoMars mission

NASA Astrophysics Data System (ADS)

Biancheri-Astier, M.; Ciarletti, V.; Reineix, A.; Corbel, C.; Dolon, F.; Simon, Y.; Caudoux, C.; Lapauw, L.; Berthelier, Jj.; Ney, R.

2009-04-01

Despite several past and present missions to Mars, very little information is available on its subsurface. One of the scientific objectives of the European ExoMars mission (ESA) is to characterize the water / geochemical environment as a function of depth and investigate the planet subsurface to better understand the evolution and habitability of the planet. The electromagnetic survey of subsurface will provide a nondestructive way to probe the subsurface and look for potential deep liquid water reservoirs. The LATMOS (ex CETP) is currently developing a ground penetrating radar (GPR) called EISS "Electromagnetic Investigation of the Sub Surface", which is a enhanced version of the TAPIR "Terrestrial and Planetary Imaging Radar", developed in the frame of the Netlander mission cancelled in 2004. The GPR main objective is to perform sounding of the sub-surface down to kilometric depth. EISS is an impulse GPR operating, from the Martian surface, at HF frequencies (~ 2-4MHz) with a wide bandwidth (100kHz-5MHz). EISS can operate in four modes: impedance measurement, mono and bi-static survey, passive mode. The EISS innovative concept is based on the use of the fixed station (Lander) and mobile rover to conduct subsurface surveys of the area visited by the Rover. The work at HF frequencies, EISS uses a half-wave resistively loaded dipole electrical antenna i.e. two monopoles 35 meters long each to transmit (and also receive in mono-static mode) the signal. The resistive profile of the antenna follows a Wu-King profile which is optimized to transmit the pulse without noticeable distortion and avoid ringing. The two monopoles will be deployed in roughly opposite directions on the surface of Mars. The exact value of the direction of deployment for each monopole will be chosen in order to minimize the contact with the Lander structure, avoid obstacles and the solar panels still ensuring a good coverage of the whole area. In bi-static mode, the signal is received with a small

Gravitational Radiation from Binary Black Holes: Advances in the Perturbative Approach

NASA Astrophysics Data System (ADS)

Lousto, C. O.

2005-08-01

. Other sources of gravitational waves are the product of excitation of the supermassive black holes present in the core of most of the galaxies in the universe by surrounding stars; such a star will eventually get close enough - presumably through three-body encounters - for the gravitational radiation to play an important role in the further evolution of its orbit and eventually cause it to merge into its supermassive companion. As the mass ratios are expected to be of the order of 10-3 at most, our perturbative expansion represents a fantastic degree of accuracy, allowing detailed analysis of the sources by space-based detectors sensitive to sub-Hertz frequencies, such as LISA - a joint mission of NASA and ESA that plans to launch three spaceships in orbit around the sun during the next decade. The universe can offer us an even more energetic event: when two galaxies collide, the merger of their central supermassive black holes will produce the largest burst of gravitational radiation in the universe. Presumably the mass ratio in this case will be in the range of 1 to 10-3, hence the extreme usefulness of the second-order approach. Let us return to 1997. After decades of being an open problem, the formulae for the self-force were finally available and, it seemed, ready to be applied in specific computations. This inspired a group of young researchers to meet and study in detail the papers containing the solution to the self-force problem. A ranch donated to Caltech by the movie director Frank Capra made the perfect retreat location, and so in 1998 the series of Capra meetings on radiation reaction was born in San Diego, California. Every year since then, the meeting has incorporated new people and become more formally organized. In 1999 the 2nd Capra meeting took place in Dublin, Ireland http://www.lsc-group.phys.uwm.edu/~patrick/ireland99/. In 2000 it returned to Caltech http://www.tapir.caltech.edu/capra3/, and in 2001 I had the opportunity to organize the 4th Capra