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Sample records for uml class diagram

  1. Diagram, a Learning Environment for Initiation to Object-Oriented Modeling with UML Class Diagrams

    ERIC Educational Resources Information Center

    Py, Dominique; Auxepaules, Ludovic; Alonso, Mathilde

    2013-01-01

    This paper presents Diagram, a learning environment for object-oriented modelling (OOM) with UML class diagrams. Diagram an open environment, in which the teacher can add new exercises without constraints on the vocabulary or the size of the diagram. The interface includes methodological help, encourages self-correcting and self-monitoring, and…

  2. TCD: A Text-Based UML Class Diagram Notation and Its Model Converters

    NASA Astrophysics Data System (ADS)

    Washizaki, Hironori; Akimoto, Masayoshi; Hasebe, Atsushi; Kubo, Atsuto; Fukazawa, Yoshiaki

    Among several diagrams defined in UML, the class diagram is particularly useful through entire software development process, from early domain analysis stages to later maintenance stages. However conventional UML environments are often inappropriate for collaborative modeling in physically remote locations, such as exchanging models on a public mailing list via email. To overcome this issue, we propose a new diagram notation, called "TCD" (Text-based uml Class Diagram), for describing UML class diagrams using ASCII text. Since text files can be easily created, modified and exchanged in anywhere by any computing platforms, TCD facilitates the collaborative modeling with a number of unspecified people. Moreover, we implemented model converters for converting in both directions between UML class diagrams described in the XMI form and those in the TCD form. By using the converters, the reusability of models can be significantly improved because many of UML modeling tools support the XMI for importing and exporting modeling data.

  3. Supporting Collaborative Learning and Problem-Solving in a Constraint-Based CSCL Environment for UML Class Diagrams

    ERIC Educational Resources Information Center

    Baghaei, Nilufar; Mitrovic, Antonija; Irwin, Warwick

    2007-01-01

    We present COLLECT-UML, a constraint-based intelligent tutoring system (ITS) that teaches object-oriented analysis and design using Unified Modelling Language (UML). UML is easily the most popular object-oriented modelling technology in current practice. While teaching how to design UML class diagrams, COLLECT-UML also provides feedback on…

  4. Program Synthesizes UML Sequence Diagrams

    NASA Technical Reports Server (NTRS)

    Barry, Matthew R.; Osborne, Richard N.

    2006-01-01

    A computer program called "Rational Sequence" generates Universal Modeling Language (UML) sequence diagrams of a target Java program running on a Java virtual machine (JVM). Rational Sequence thereby performs a reverse engineering function that aids in the design documentation of the target Java program. Whereas previously, the construction of sequence diagrams was a tedious manual process, Rational Sequence generates UML sequence diagrams automatically from the running Java code.

  5. An investigation of difficulties experienced by students developing unified modelling language (UML) class and sequence diagrams

    NASA Astrophysics Data System (ADS)

    Sien, Ven Yu

    2011-12-01

    Object-oriented analysis and design (OOAD) is not an easy subject to learn. There are many challenges confronting students when studying OOAD. Students have particular difficulty abstracting real-world problems within the context of OOAD. They are unable to effectively build object-oriented (OO) models from the problem domain because they essentially do not know "what" to model. This article investigates the difficulties and misconceptions undergraduate students have with analysing systems using unified modelling language analysis class and sequence diagrams. These models were chosen because they represent important static and dynamic aspects of the software system under development. The results of this study will help students produce effective OO models, and facilitate software engineering lecturers design learning materials and approaches for introductory OOAD courses.

  6. UML activity diagrams in requirements specification of logic controllers

    NASA Astrophysics Data System (ADS)

    Grobelna, Iwona; Grobelny, Michał

    2015-12-01

    Logic controller specification can be prepared using various techniques. One of them is the wide understandable and user-friendly UML language and its activity diagrams. Using formal methods during the design phase increases the assurance that implemented system meets the project requirements. In the approach we use the model checking technique to formally verify a specification against user-defined behavioral requirements. The properties are usually defined as temporal logic formulas. In the paper we propose to use UML activity diagrams in requirements definition and then to formalize them as temporal logic formulas. As a result, UML activity diagrams can be used both for logic controller specification and for requirements definition, what simplifies the specification and verification process.

  7. Students' different understandings of class diagrams

    NASA Astrophysics Data System (ADS)

    Boustedt, Jonas

    2012-03-01

    The software industry needs well-trained software designers and one important aspect of software design is the ability to model software designs visually and understand what visual models represent. However, previous research indicates that software design is a difficult task to many students. This article reports empirical findings from a phenomenographic investigation on how students understand class diagrams, Unified Modeling Language (UML) symbols, and relations to object-oriented (OO) concepts. The informants were 20 Computer Science students from four different universities in Sweden. The results show qualitatively different ways to understand and describe UML class diagrams and the "diamond symbols" representing aggregation and composition. The purpose of class diagrams was understood in a varied way, from describing it as a documentation to a more advanced view related to communication. The descriptions of class diagrams varied from seeing them as a specification of classes to a more advanced view, where they were described to show hierarchic structures of classes and relations. The diamond symbols were seen as "relations" and a more advanced way was seeing the white and the black diamonds as different symbols for aggregation and composition. As a consequence of the results, it is recommended that UML should be adopted in courses. It is briefly indicated how the phenomenographic results in combination with variation theory can be used by teachers to enhance students' possibilities to reach advanced understanding of phenomena related to UML class diagrams. Moreover, it is recommended that teachers should put more effort in assessing skills in proper usage of the basic symbols and models and students should be provided with opportunities to practise collaborative design, e.g. using whiteboards.

  8. Language and Tool Support for Class and State Machine Refinement in UML-B

    NASA Astrophysics Data System (ADS)

    Said, Mar Yah; Butler, Michael; Snook, Colin

    UML-B is a ‘UML-like’ graphical front end for Event-B that provides support for object-oriented modelling concepts. In particular, UML-B supports class diagrams and state machines, concepts that are not explicitly supported in plain Event-B. In Event-B, refinement is used to relate system models at different abstraction levels. The same abstraction-refinement concepts can also be applied in UML-B. This paper introduces the notions of refined classes and refined state machines to enable refinement of classes and state machines in UML-B. Together with these notions, a technique for moving an event between classes to facilitate abstraction is also introduced. Our work makes explicit the structures of class and state machine refinement in UML-B. The UML-B drawing tool and Event-B translator are extended to support the new refinement concepts. A case study of an auto teller machine (ATM) is presented to demonstrate application and effectiveness of refined classes and refined state machines.

  9. minimUML: A Minimalist Approach to UML Diagramming for Early Computer Science Education

    ERIC Educational Resources Information Center

    Turner, Scott A.; Perez-Quinones, Manuel A.; Edwards, Stephen H.

    2005-01-01

    In introductory computer science courses, the Unified Modeling Language (UML) is commonly used to teach basic object-oriented design. However, there appears to be a lack of suitable software to support this task. Many of the available programs that support UML focus on developing code and not on enhancing learning. Programs designed for…

  10. Class diagram based evaluation of software performance

    NASA Astrophysics Data System (ADS)

    Pham, Huong V.; Nguyen, Binh N.

    2013-03-01

    The evaluation of software performance in the early stages of the software life cycle is important and it has been widely studied. In the software model specification, class diagram is the important object-oriented software specification model. The measures based on a class diagram have been widely studied to evaluate quality of software such as complexity, maintainability, reuse capability, etc. However the software performance evaluation based on Class model has not been widely studied, especially for object-oriented design of embedded software. Therefore, in this paper we propose a new approach to directly evaluate the software performance based on class diagrams. From a class diagram, we determine the parameters which are used to evaluate and build formula of the measures such as Size of Class Variables, Size of Class Methods, Size of Instance Variables, Size of Instance Methods, etc. Then, we do analysis of the dependence of performance on these measures and build the performance evaluation function from class diagram. Thereby we can choose the best class diagram based on this evaluation function.

  11. Semi-Automatically Inducing Semantic Classes of Clinical Research Eligibility Criteria Using UMLS and Hierarchical Clustering.

    PubMed

    Luo, Zhihui; Johnson, Stephen B; Weng, Chunhua

    2010-01-01

    This paper presents a novel approach to learning semantic classes of clinical research eligibility criteria. It uses the UMLS Semantic Types to represent semantic features and the Hierarchical Clustering method to group similar eligibility criteria. By establishing a gold standard using two independent raters, we evaluated the coverage and accuracy of the induced semantic classes. On 2,718 random eligibility criteria sentences, the inter-rater classification agreement was 85.73%. In a 10-fold validation test, the average Precision, Recall and F-score of the classification results of a decision-tree classifier were 87.8%, 88.0%, and 87.7% respectively. Our induced classes well aligned with 16 out of 17 eligibility criteria classes defined by the BRIDGE model. We discuss the potential of this method and our future work. PMID:21347026

  12. Doclet To Synthesize UML

    NASA Technical Reports Server (NTRS)

    Barry, Matthew R.; Osborne, Richard N.

    2005-01-01

    The RoseDoclet computer program extends the capability of Java doclet software to automatically synthesize Unified Modeling Language (UML) content from Java language source code. [Doclets are Java-language programs that use the doclet application programming interface (API) to specify the content and format of the output of Javadoc. Javadoc is a program, originally designed to generate API documentation from Java source code, now also useful as an extensible engine for processing Java source code.] RoseDoclet takes advantage of Javadoc comments and tags already in the source code to produce a UML model of that code. RoseDoclet applies the doclet API to create a doclet passed to Javadoc. The Javadoc engine applies the doclet to the source code, emitting the output format specified by the doclet. RoseDoclet emits a Rose model file and populates it with fully documented packages, classes, methods, variables, and class diagrams identified in the source code. The way in which UML models are generated can be controlled by use of new Javadoc comment tags that RoseDoclet provides. The advantage of using RoseDoclet is that Javadoc documentation becomes leveraged for two purposes: documenting the as-built API and keeping the design documentation up to date.

  13. An Investigation of Difficulties Experienced by Students Developing Unified Modelling Language (UML) Class and Sequence Diagrams

    ERIC Educational Resources Information Center

    Sien, Ven Yu

    2011-01-01

    Object-oriented analysis and design (OOAD) is not an easy subject to learn. There are many challenges confronting students when studying OOAD. Students have particular difficulty abstracting real-world problems within the context of OOAD. They are unable to effectively build object-oriented (OO) models from the problem domain because they…

  14. Preface to FP-UML 2009

    NASA Astrophysics Data System (ADS)

    Trujillo, Juan; Kim, Dae-Kyoo

    The Unified Modeling Language (UML) has been widely accepted as the standard object-oriented (OO) modeling language for modeling various aspects of software and information systems. The UML is an extensible language, in the sense that it provides mechanisms to introduce new elements for specific domains if necessary, such as web applications, database applications, business modeling, software development processes, data warehouses. Furthermore, the latest version of UML 2.0 got even bigger and more complicated with more diagrams for some good reasons. Although UML provides different diagrams for modeling different aspects of a software system, not all of them need to be applied in most cases. Therefore, heuristics, design guidelines, lessons learned from experiences are extremely important for the effective use of UML 2.0 and to avoid unnecessary complication. Also, approaches are needed to better manage UML 2.0 and its extensions so they do not become too complex too manage in the end.

  15. Automatic Synthesis of UML Designs from Requirements in an Iterative Process

    NASA Technical Reports Server (NTRS)

    Schumann, Johann; Whittle, Jon; Clancy, Daniel (Technical Monitor)

    2001-01-01

    The Unified Modeling Language (UML) is gaining wide popularity for the design of object-oriented systems. UML combines various object-oriented graphical design notations under one common framework. A major factor for the broad acceptance of UML is that it can be conveniently used in a highly iterative, Use Case (or scenario-based) process (although the process is not a part of UML). Here, the (pre-) requirements for the software are specified rather informally as Use Cases and a set of scenarios. A scenario can be seen as an individual trace of a software artifact. Besides first sketches of a class diagram to illustrate the static system breakdown, scenarios are a favorite way of communication with the customer, because scenarios describe concrete interactions between entities and are thus easy to understand. Scenarios with a high level of detail are often expressed as sequence diagrams. Later in the design and implementation stage (elaboration and implementation phases), a design of the system's behavior is often developed as a set of statecharts. From there (and the full-fledged class diagram), actual code development is started. Current commercial UML tools support this phase by providing code generators for class diagrams and statecharts. In practice, it can be observed that the transition from requirements to design to code is a highly iterative process. In this talk, a set of algorithms is presented which perform reasonable synthesis and transformations between different UML notations (sequence diagrams, Object Constraint Language (OCL) constraints, statecharts). More specifically, we will discuss the following transformations: Statechart synthesis, introduction of hierarchy, consistency of modifications, and "design-debugging".

  16. A Survey of UML Based Regression Testing

    NASA Astrophysics Data System (ADS)

    Fahad, Muhammad; Nadeem, Aamer

    Regression testing is the process of ensuring software quality by analyzing whether changed parts behave as intended, and unchanged parts are not affected by the modifications. Since it is a costly process, a lot of techniques are proposed in the research literature that suggest testers how to build regression test suite from existing test suite with minimum cost. In this paper, we discuss the advantages and drawbacks of using UML diagrams for regression testing and analyze that UML model helps in identifying changes for regression test selection effectively. We survey the existing UML based regression testing techniques and provide an analysis matrix to give a quick insight into prominent features of the literature work. We discuss the open research issues like managing and reducing the size of regression test suite, prioritization of the test cases that would be helpful during strict schedule and resources that remain to be addressed for UML based regression testing.

  17. Bioinformatics for transporter pharmacogenomics and systems biology: data integration and modeling with UML.

    PubMed

    Yan, Qing

    2010-01-01

    Bioinformatics is the rational study at an abstract level that can influence the way we understand biomedical facts and the way we apply the biomedical knowledge. Bioinformatics is facing challenges in helping with finding the relationships between genetic structures and functions, analyzing genotype-phenotype associations, and understanding gene-environment interactions at the systems level. One of the most important issues in bioinformatics is data integration. The data integration methods introduced here can be used to organize and integrate both public and in-house data. With the volume of data and the high complexity, computational decision support is essential for integrative transporter studies in pharmacogenomics, nutrigenomics, epigenetics, and systems biology. For the development of such a decision support system, object-oriented (OO) models can be constructed using the Unified Modeling Language (UML). A methodology is developed to build biomedical models at different system levels and construct corresponding UML diagrams, including use case diagrams, class diagrams, and sequence diagrams. By OO modeling using UML, the problems of transporter pharmacogenomics and systems biology can be approached from different angles with a more complete view, which may greatly enhance the efforts in effective drug discovery and development. Bioinformatics resources of membrane transporters and general bioinformatics databases and tools that are frequently used in transporter studies are also collected here. An informatics decision support system based on the models presented here is available at http://www.pharmtao.com/transporter . The methodology developed here can also be used for other biomedical fields. PMID:20419428

  18. Comprehensive Aspectual UML Approach to Support AspectJ

    PubMed Central

    Magableh, Aws; Shukur, Zarina; Mohd. Ali, Noorazean

    2014-01-01

    Unified Modeling Language is the most popular and widely used Object-Oriented modelling language in the IT industry. This study focuses on investigating the ability to expand UML to some extent to model crosscutting concerns (Aspects) to support AspectJ. Through a comprehensive literature review, we identify and extensively examine all the available Aspect-Oriented UML modelling approaches and find that the existing Aspect-Oriented Design Modelling approaches using UML cannot be considered to provide a framework for a comprehensive Aspectual UML modelling approach and also that there is a lack of adequate Aspect-Oriented tool support. This study also proposes a set of Aspectual UML semantic rules and attempts to generate AspectJ pseudocode from UML diagrams. The proposed Aspectual UML modelling approach is formally evaluated using a focus group to test six hypotheses regarding performance; a “good design” criteria-based evaluation to assess the quality of the design; and an AspectJ-based evaluation as a reference measurement-based evaluation. The results of the focus group evaluation confirm all the hypotheses put forward regarding the proposed approach. The proposed approach provides a comprehensive set of Aspectual UML structural and behavioral diagrams, which are designed and implemented based on a comprehensive and detailed set of AspectJ programming constructs. PMID:25136656

  19. Comprehensive Aspectual UML approach to support AspectJ.

    PubMed

    Magableh, Aws; Shukur, Zarina; Ali, Noorazean Mohd

    2014-01-01

    Unified Modeling Language is the most popular and widely used Object-Oriented modelling language in the IT industry. This study focuses on investigating the ability to expand UML to some extent to model crosscutting concerns (Aspects) to support AspectJ. Through a comprehensive literature review, we identify and extensively examine all the available Aspect-Oriented UML modelling approaches and find that the existing Aspect-Oriented Design Modelling approaches using UML cannot be considered to provide a framework for a comprehensive Aspectual UML modelling approach and also that there is a lack of adequate Aspect-Oriented tool support. This study also proposes a set of Aspectual UML semantic rules and attempts to generate AspectJ pseudocode from UML diagrams. The proposed Aspectual UML modelling approach is formally evaluated using a focus group to test six hypotheses regarding performance; a "good design" criteria-based evaluation to assess the quality of the design; and an AspectJ-based evaluation as a reference measurement-based evaluation. The results of the focus group evaluation confirm all the hypotheses put forward regarding the proposed approach. The proposed approach provides a comprehensive set of Aspectual UML structural and behavioral diagrams, which are designed and implemented based on a comprehensive and detailed set of AspectJ programming constructs. PMID:25136656

  20. Mapping the UMLS Semantic Network into general ontologies.

    PubMed

    Burgun, A; Bodenreider, O

    2001-01-01

    In this study, we analyzed the compatibility between an ontology of the biomedical domain (the UMLS Semantic Network) and two other ontologies: the Upper Cyc Ontology (UCO) and WordNet. 1) We manually mapped UMLS Semantic Types to UCO. One fifth of the UMLS Semantic Types had exact mapping to UCO types. UCO provides generic concepts and a structure that relies on a larger number of categories, despite its lack of depth in the biomedical domain. 2) We compared semantic classes in the UMLS and WordNet. 2% of the UMLS concepts from the Health Disorder class were present in WordNet, and compatibility between classes was 48%. WordNet, as a general language-oriented ontology is a source of lay knowledge, particularly important for consumer health applications. PMID:11833483

  1. First steps toward the construction of a hyperphase diagram that covers different classes of short polymer chains

    NASA Astrophysics Data System (ADS)

    Sabeur, Sid

    2014-06-01

    We present the results of a multicanonical Monte Carlo study of flexible and wormlike polymer chains, where we investigate how the polymer structures observed during the simulations, mainly coil, liquid, and crystalline structures, can help to construct a hyperphase diagram that covers different polymer classes according to their thermodynamic behavior.

  2. Automatic Debugging Support for UML Designs

    NASA Technical Reports Server (NTRS)

    Schumann, Johann; Swanson, Keith (Technical Monitor)

    2001-01-01

    Design of large software systems requires rigorous application of software engineering methods covering all phases of the software process. Debugging during the early design phases is extremely important, because late bug-fixes are expensive. In this paper, we describe an approach which facilitates debugging of UML requirements and designs. The Unified Modeling Language (UML) is a set of notations for object-orient design of a software system. We have developed an algorithm which translates requirement specifications in the form of annotated sequence diagrams into structured statecharts. This algorithm detects conflicts between sequence diagrams and inconsistencies in the domain knowledge. After synthesizing statecharts from sequence diagrams, these statecharts usually are subject to manual modification and refinement. By using the "backward" direction of our synthesis algorithm. we are able to map modifications made to the statechart back into the requirements (sequence diagrams) and check for conflicts there. Fed back to the user conflicts detected by our algorithm are the basis for deductive-based debugging of requirements and domain theory in very early development stages. Our approach allows to generate explanations oil why there is a conflict and which parts of the specifications are affected.

  3. BGen: A UML Behavior Network Generator Tool

    NASA Technical Reports Server (NTRS)

    Huntsberger, Terry; Reder, Leonard J.; Balian, Harry

    2010-01-01

    BGen software was designed for autogeneration of code based on a graphical representation of a behavior network used for controlling automatic vehicles. A common format used for describing a behavior network, such as that used in the JPL-developed behavior-based control system, CARACaS ["Control Architecture for Robotic Agent Command and Sensing" (NPO-43635), NASA Tech Briefs, Vol. 32, No. 10 (October 2008), page 40] includes a graph with sensory inputs flowing through the behaviors in order to generate the signals for the actuators that drive and steer the vehicle. A computer program to translate Unified Modeling Language (UML) Freeform Implementation Diagrams into a legacy C implementation of Behavior Network has been developed in order to simplify the development of C-code for behavior-based control systems. UML is a popular standard developed by the Object Management Group (OMG) to model software architectures graphically. The C implementation of a Behavior Network is functioning as a decision tree.

  4. Using Diagrams versus Text for Spaced Restudy: Effects on Learning in 10th Grade Biology Classes

    ERIC Educational Resources Information Center

    Bergey, Bradley W.; Cromley, Jennifer G.; Kirchgessner, Mandy L.; Newcombe, Nora S.

    2015-01-01

    Background and Aim: Spaced restudy has been typically tested with written learning materials, but restudy with visual representations in actual classrooms is under-researched. We compared the effects of two spaced restudy interventions: A Diagram-Based Restudy (DBR) warm-up condition and a business-as-usual Text-Based Restudy (TBR) warm-up…

  5. Implementation of UML Schema to RDBM

    NASA Astrophysics Data System (ADS)

    Nagni, M.; Ventouras, S.; Parton, G.

    2012-04-01

    Multiple disciplines - especially those within the earth and physical sciences, and increasingly those within social science and medical fields - require Geographic Information (GI) i.e. information concerning phenomena implicitly or explicitly associated with a location relative to the Earth [1]. Therefore geographic datasets are increasingly being shared, exchanged and frequently used for purposes other than those for which they were originally intended. The ISO Technical Committee 211 (ISO/TC 211) together with Open Geospatial Consortium (OGC) provide a series of standards and guidelines for developing application schemas which should: a) capture relevant conceptual aspects of the data involved; and b) be sufficient to satisfy previously defined use-cases of a specific or cross-domain concerns. In addition, the Hollow World technology offers an accessible and industry-standardised methodology for creating and editing Application Schema UML models which conform to international standards for interoperable GI [2]. We present a technology which seamlessly transforms an Application Schema UML model to a relational database model (RDBM). This technology, using the same UML information model, complements the XML transformation of an information model produced by the FullMoon tool [2]. In preparation for the generation of a RDBM the UML model is first mapped to a collection of OO classes and relationships. Any external dependencies that exist are then resolved through the same mechanism. However, a RDBM does not support a hierarchical (relational) data structure - a function that may be required by UML models. Previous approaches have addressed this problem through use of nested sets or an adjacent list to represent such structure. Our unique strategy addresses the hierarchical data structure issue, whether singular or multiple inheritance, by hiding a delegation pattern within an OO class. This permits the object-relational mapping (ORM) software used to generate the

  6. Real-time multispectral imaging system for online poultry fecal inspection using UML

    NASA Astrophysics Data System (ADS)

    Park, Bosoon; Kise, Michio; Lawrence, Kurt C.; Windham, William R.; Smith, Douglas P.; Thai, Chi N.

    2006-10-01

    A prototype real-time multispectral imaging system for fecal and ingesta contaminant detection on broiler carcasses has been developed. The prototype system includes a common aperture camera with three optical trim filters (517, 565 and 802-nm wavelength), which were selected by visible/NIR spectroscopy and validated by a hyperspectral imaging system with decision tree algorithm. The on-line testing results showed that the multispectral imaging technique can be used effectively for detecting feces (from duodenum, ceca, and colon) and ingesta on the surface of poultry carcasses with a processing speed of 140 birds per minute. This paper demonstrated both multispectral imaging hardware and real-time image processing software. For the software development, the Unified Modeling Language (UML) design approach was used for on-line application. The UML models included class, object, activity, sequence, and collaboration diagram. User interface model included seventeen inputs and six outputs. A window based real-time image processing software composed of eleven components, which represented class, architecture, and activity. Both hardware and software for a real-time fecal detection were tested at the pilot-scale poultry processing plant. The run-time of the software including online calibration was fast enough to inspect carcasses on-line with an industry requirement. Based on the preliminary test at the pilot-scale processing line, the system was able to acquire poultry images in real-time. According to the test results, the imaging system is reliable for the harsh environments and UML based image processing software is flexible and easy to be updated when additional parameters are needed for in-plant trials.

  7. A UML Profile for State Analysis

    NASA Technical Reports Server (NTRS)

    Murray, Alex; Rasmussen, Robert

    2010-01-01

    State Analysis is a systems engineering methodology for the specification and design of control systems, developed at the Jet Propulsion Laboratory. The methodology emphasizes an analysis of the system under control in terms of States and their properties and behaviors and their effects on each other, a clear separation of the control system from the controlled system, cognizance in the control system of the controlled system's State, goal-based control built on constraining the controlled system's States, and disciplined techniques for State discovery and characterization. State Analysis (SA) introduces two key diagram types: State Effects and Goal Network diagrams. The team at JPL developed a tool for performing State Analysis. The tool includes a drawing capability, backed by a database that supports the diagram types and the organization of the elements of the SA models. But the tool does not support the usual activities of software engineering and design - a disadvantage, since systems to which State Analysis can be applied tend to be very software-intensive. This motivated the work described in this paper: the development of a preliminary Unified Modeling Language (UML) profile for State Analysis. Having this profile would enable systems engineers to specify a system using the methods and graphical language of State Analysis, which is easily linked with a larger system model in SysML (Systems Modeling Language), while also giving software engineers engaged in implementing the specified control system immediate access to and use of the SA model, in the same language, UML, used for other software design. That is, a State Analysis profile would serve as a shared modeling bridge between system and software models for the behavior aspects of the system. This paper begins with an overview of State Analysis and its underpinnings, followed by an overview of the mapping of SA constructs to the UML metamodel. It then delves into the details of these mappings and the

  8. Metaphor and Numerical Diagrams in the Arithmetical Activity of a Fourth-Grade Class

    ERIC Educational Resources Information Center

    Saenz-Ludlow, Adalira

    2004-01-01

    Fourth-grade students who participated in a yearlong, whole-class teaching experiment not only reconceptualized natural numbers but also generated flexible solution strategies to perform numerical computations mentally and in writing. Students' reconceptualization of number was mediated by their perceived resemblance between the physical action of…

  9. UML Profiles for Design Decisions and Non-Functional Requirements

    SciTech Connect

    Zhu, Liming; Gorton, Ian

    2007-06-30

    A software architecture is composed of a collection of design decisions. Each design decision helps or hinders certain Non-Functional Requirements (NFR). Current software architecture views focus on expressing components and connectors in the system. Design decisions and their relationships with non-functional requirements are often captured in separate design documentation, not explicitly expressed in any views. This disassociation makes architecture comprehension and architecture evolution harder. In this paper, we propose a UML profile for modeling design decisions and an associated UML profile for modeling non-functional requirements in a generic way. The two UML profiles treat design decisions and nonfunctional requirements as first-class elements. Modeled design decisions always refer to existing architectural elements and thus maintain traceability between the two. We provide a mechanism for checking consistency over this traceability. An exemplar is given as

  10. Aspect-Oriented Subprogram Synthesizes UML Sequence Diagrams

    NASA Technical Reports Server (NTRS)

    Barry, Matthew R.; Osborne, Richard N.

    2006-01-01

    The Rational Sequence computer program described elsewhere includes a subprogram that utilizes the capability for aspect-oriented programming when that capability is present. This subprogram is denoted the Rational Sequence (AspectJ) component because it uses AspectJ, which is an extension of the Java programming language that introduces aspect-oriented programming techniques into the language

  11. Modeling Value Chain Analysis of Distance Education using UML

    NASA Astrophysics Data System (ADS)

    Acharya, Anal; Mukherjee, Soumen

    2010-10-01

    Distance education continues to grow as a methodology for the delivery of course content in higher education in India as well as abroad. To manage this growing demand and to provide certain flexibility, there must be certain strategic planning about the use of ICT tools. Value chain analysis is a framework for breaking down the sequence of business functions into a set of activities through which utility could be added to service. Thus it can help to determine the competitive advantage that is enjoyed by an institute. To implement these business functions certain visual representation is required. UML allows for this representation by using a set of structural and behavioral diagrams. In this paper, the first section defines a framework for value chain analysis and highlights its advantages. The second section gives a brief overview of related work in this field. The third section gives a brief discussion on distance education. The fourth section very briefly introduces UML. The fifth section models value chain of distance education using UML. Finally we discuss the limitations and the problems posed in this domain.

  12. A conceptual graphs modeling of UMLS components.

    PubMed

    Joubert, M; Miton, F; Fieschi, M; Robert, J J

    1995-01-01

    The Unified Medical Language System (UMLS) of the U.S. National Library of Medicine is a complex collection of terms, concepts, and relationships derived from standard classifications. Potential applications would benefit from a high level representation of its components. This paper proposes a conceptual representation of both the Metathesaurus and the Semantic Network of the UMLS based on conceptual graphs. It shows that the addition of a dictionary of concepts to the UMLS knowledge base allows the capability to exploit it pertinently. This dictionary defines more precisely the core concepts and adds constraints on their use. Constraints are dedicated to guide an "intelligent" browsing of the UMLS knowledge sources. PMID:8591348

  13. Phase Equilibria Diagrams Database

    National Institute of Standards and Technology Data Gateway

    SRD 31 NIST/ACerS Phase Equilibria Diagrams Database (PC database for purchase)   The Phase Equilibria Diagrams Database contains commentaries and more than 21,000 diagrams for non-organic systems, including those published in all 21 hard-copy volumes produced as part of the ACerS-NIST Phase Equilibria Diagrams Program (formerly titled Phase Diagrams for Ceramists): Volumes I through XIV (blue books); Annuals 91, 92, 93; High Tc Superconductors I & II; Zirconium & Zirconia Systems; and Electronic Ceramics I. Materials covered include oxides as well as non-oxide systems such as chalcogenides and pnictides, phosphates, salt systems, and mixed systems of these classes.

  14. Teaching Object-Oriented Modelling Using UML

    NASA Astrophysics Data System (ADS)

    Boberić-Krstićev, Danijela; Tešendić, Danijela

    2011-09-01

    The paper elaborates on experiences and lessons learned from the course on object-oriented analyses and design at the Faculty of Sciences, Novi Sad. In the paper we identify a set of issues concerning teaching modeling and UML. It is described experience of teaching UML to students with and without previous knowledge of object-oriented programming.

  15. Model-Driven Theme/UML

    NASA Astrophysics Data System (ADS)

    Carton, Andrew; Driver, Cormac; Jackson, Andrew; Clarke, Siobhán

    Theme/UML is an existing approach to aspect-oriented modelling that supports the modularisation and composition of concerns, including crosscutting ones, in design. To date, its lack of integration with model-driven engineering (MDE) techniques has limited its benefits across the development lifecycle. Here, we describe our work on facilitating the use of Theme/UML as part of an MDE process. We have developed a transformation tool that adopts model-driven architecture (MDA) standards. It defines a concern composition mechanism, implemented as a model transformation, to support the enhanced modularisation features of Theme/UML. We evaluate our approach by applying it to the development of mobile, context-aware applications-an application area characterised by many non-functional requirements that manifest themselves as crosscutting concerns.

  16. UMLS-based access to CPR data.

    PubMed

    van Mulligen, E M

    1998-01-01

    This paper describes the results of a project that explores the use the Unified Medical Language System (UMLS) for knowledge-driven tasks, such as browsing a computer-based patient record (CPR). The project consisted of a number of steps: the mapping between CPR terms and UMLS concepts, the development of an algorithm that explores the CPR data using this mapping, and the implementation of a first prototype browser that visualizes "found" data. A second task addressed in this project has been the direct access to online medical literature (MEDLINE) using the UMLS concepts found in the CPR data. In this project, we used a preliminary version of the Open Records for Patient Care (ORCA) CPR that consisted only of the history and physical examination data of patient suffering from heart failure. PMID:10384441

  17. UMLS Concept Indexing for Production Databases

    PubMed Central

    Nadkarni, Prakash; Chen, Roland; Brandt, Cynthia

    2001-01-01

    Objectives: To explore the feasibility of using the National Library of Medicine's Unified Medical Language System (UMLS) Metathesaurus as the basis for a computational strategy to identify concepts in medical narrative text preparatory to indexing. To quantitatively evaluate this strategy in terms of true positives, false positives (spuriously identified concepts) and false negatives (concepts missed by the identification process). Methods: Using the 1999 UMLS Metathesaurus, the authors processed a training set of 100 documents (50 discharge summaries, 50 surgical notes) with a concept-identification program, whose output was manually analyzed. They flagged concepts that were erroneously identified and added new concepts that were not identified by the program, recording the reason for failure in such cases. After several refinements to both their algorithm and the UMLS subset on which it operated, they deployed the program on a test set of 24 documents (12 of each kind). Results: Of 8,745 matches in the training set, 7,227 (82.6 percent ) were true positives, whereas of 1,701 matches in the test set, 1,298 (76.3 percent) were true positives. Matches other than true positive indicated potential problems in production-mode concept indexing. Examples of causes of problems were redundant concepts in the UMLS, homonyms, acronyms, abbreviations and elisions, concepts that were missing from the UMLS, proper names, and spelling errors. Conclusions: The error rate was too high for concept indexing to be the only production-mode means of preprocessing medical narrative. Considerable curation needs to be performed to define a UMLS subset that is suitable for concept matching. PMID:11141514

  18. Auditing the UMLS for redundant classifications.

    PubMed Central

    Peng, Yi; Halper, Michael H.; Perl, Yehoshua; Geller, James

    2002-01-01

    The UMLS's Semantic Network (SN) serves as a valuable abstraction for the underlying concept repository called the Metathesaurus (META). Specifically, the SN forms a classification layer for the META, with each of the META's constituent concepts assigned to one or more semantic types in the SN. The rule in the design of the SN is to have concepts explicitly assigned to the lowest possible semantic types in the SN's IS-A hierarchy. Implicit assignment to higher semantic types can be inferred via the IS-A relationships. However, in subsequent versions of the UMLS, unnecessary, simultaneous assignments to descendant and ancestor semantic types have been discovered (e.g., 8,622 in the UMLS 1998 version and 12,657 in the 2001 version). The assignment of concepts to such ancestor semantic types is called redundant classification. There is a need for an automated auditing tool that can identify all these redundant classifications. In this paper, an efficient algorithm for this auditing task is introduced. Details of its application to the current (2001) version of the UMLS are presented and the results are discussed. PMID:12463896

  19. UMLS knowledge for biomedical language processing.

    PubMed Central

    McCray, A T; Aronson, A R; Browne, A C; Rindflesch, T C; Razi, A; Srinivasan, S

    1993-01-01

    This paper describes efforts to provide access to the free text in biomedical databases. The focus of the effort is the development of SPECIALIST, an experimental natural language processing system for the biomedical domain. The system includes a broad coverage parser supported by a large lexicon, modules that provide access to the extensive Unified Medical Language System (UMLS) Knowledge Sources, and a retrieval module that permits experiments in information retrieval. The UMLS Metathesaurus and Semantic Network provide a rich source of biomedical concepts and their interrelationships. Investigations have been conducted to determine the type of information required to effect a map between the language of queries and the language of relevant documents. Mappings are never straightforward and often involve multiple inferences. PMID:8472004

  20. The Neighborhood Auditing Tool: A Hybrid Interface for Auditing the UMLS

    PubMed Central

    Morrey, C. Paul; Geller, James; Halper, Michael; Perl, Yehoshua

    2009-01-01

    The UMLS’s integration of more than 100 source vocabularies, not necessarily consistent with one another, causes some inconsistencies. The purpose of auditing the UMLS is to detect such inconsistencies and to suggest how to resolve them while observing the requirement of fully representing the content of each source in the UMLS. A software tool, called the Neighborhood Auditing Tool (NAT), that facilitates UMLS auditing is presented. The NAT supports “neighborhood-based” auditing, where, at any given time, an auditor concentrates on a single focus concept and one of a variety of neighborhoods of its closely related concepts. Typical diagrammatic displays of concept networks have a number of shortcomings, so the NAT utilizes a hybrid diagram/text interface that features stylized neighborhood views which retain some of the best features of both the diagrammatic layouts and text windows while avoiding the shortcomings. The NAT allows an auditor to display knowledge from both the Metathesaurus (concept) level and the Semantic Network (semantic type) level. Various additional features of the NAT that support the auditing process are described. The usefulness of the NAT is demonstrated through a group of case studies. Its impact is tested with a study involving a select group of auditors. PMID:19475725

  1. Query expansion using the UMLS Metathesaurus.

    PubMed Central

    Aronson, A. R.; Rindflesch, T. C.

    1997-01-01

    Recent work has demonstrated the importance of query expansion for improving retrieval effectiveness when applying statistically-based systems to MEDLINE citations. The research has suggested the use of retrieval feedback for enhancing the original text of users' queries. As an alternative method of query expansion, we propose the use of the MetaMap program for associating UMLS Metathesaurus concepts with the original query. Our experiments show that query expansion based on MetaMap compares favorably with retrieval feedback. We conclude that the optimal strategy would be to combine the two techniques. PMID:9357673

  2. Thermodynamic Diagrams

    NASA Astrophysics Data System (ADS)

    Chaston, Scot

    1999-02-01

    Thermodynamic data such as equilibrium constants, standard cell potentials, molar enthalpies of formation, and standard entropies of substances can be a very useful basis for an organized presentation of knowledge in diverse areas of applied chemistry. Thermodynamic data can become particularly useful when incorporated into thermodynamic diagrams that are designed to be easy to recall, to serve as a basis for reconstructing previous knowledge, and to determine whether reactions can occur exergonically or only with the help of an external energy source. Few students in our chemistry-based courses would want to acquire the depth of knowledge or rigor of professional thermodynamicists. But they should nevertheless learn how to make good use of thermodynamic data in their professional occupations that span the chemical, biological, environmental, and medical laboratory fields. This article discusses examples of three thermodynamic diagrams that have been developed for this purpose. They are the thermodynamic energy account (TEA), the total entropy scale, and the thermodynamic scale diagrams. These diagrams help in the teaching and learning of thermodynamics by bringing the imagination into the process of developing a better understanding of abstract thermodynamic functions, and by allowing the reader to keep track of specialist thermodynamic discourses in the literature.

  3. Concepts and Synonymy in the UMLS Metathesaurus

    PubMed Central

    Merrill, Gary H.

    2009-01-01

    This paper advances a detailed exploration of the complex relationships among terms, concepts, and syn­onymy in the UMLS (Unified Medical Language System) Metathesaurus, and proposes the study and under­standing of the Metathesaurus from a model-theoretic perspective. Initial sections provide the background and motivation for such an approach, and a careful informal treatment of these notions is offered as a con­text and basis for the formal analysis. What emerges from this is a set of puzzles and confusions in the Metathesaurus and its literature pertaining to synonymy and its relation to terms and concepts. A model theory for a segment of the Metathesaurus is then constructed, and its adequacy relative to the informal treatment is demonstrated. Finally, it is shown how this approach clarifies and addresses the puzzles educed from the informal discussion, and how the model-theoretic perspective may be employed to eval­uate some fundamental criticisms of the Metathesaurus. For users of the UMLS, two significant results of this analysis are a rigorous clarification of the different senses of synonymy that appear in treatments of the Metathesaurus and an illustration of the dangers in computing inferences involving ambiguous terms. PMID:19838995

  4. The Unified Medical Language System (UMLS): integrating biomedical terminology.

    PubMed

    Bodenreider, Olivier

    2004-01-01

    The Unified Medical Language System (http://umlsks.nlm.nih.gov) is a repository of biomedical vocabularies developed by the US National Library of Medicine. The UMLS integrates over 2 million names for some 900,000 concepts from more than 60 families of biomedical vocabularies, as well as 12 million relations among these concepts. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank. In addition to data, the UMLS includes tools for customizing the Metathesaurus (MetamorphoSys), for generating lexical variants of concept names (lvg) and for extracting UMLS concepts from text (MetaMap). The UMLS knowledge sources are updated quarterly. All vocabularies are available at no fee for research purposes within an institution, but UMLS users are required to sign a license agreement. The UMLS knowledge sources are distributed on CD-ROM and by FTP. PMID:14681409

  5. State-transition diagrams for biologists.

    PubMed

    Bersini, Hugues; Klatzmann, David; Six, Adrien; Thomas-Vaslin, Véronique

    2012-01-01

    It is clearly in the tradition of biologists to conceptualize the dynamical evolution of biological systems in terms of state-transitions of biological objects. This paper is mainly concerned with (but obviously not limited too) the immunological branch of biology and shows how the adoption of UML (Unified Modeling Language) state-transition diagrams can ease the modeling, the understanding, the coding, the manipulation or the documentation of population-based immune software model generally defined as a set of ordinary differential equations (ODE), describing the evolution in time of populations of various biological objects. Moreover, that same UML adoption naturally entails a far from negligible representational economy since one graphical item of the diagram might have to be repeated in various places of the mathematical model. First, the main graphical elements of the UML state-transition diagram and how they can be mapped onto a corresponding ODE mathematical model are presented. Then, two already published immune models of thymocyte behavior and time evolution in the thymus, the first one originally conceived as an ODE population-based model whereas the second one as an agent-based one, are refactored and expressed in a state-transition form so as to make them much easier to understand and their respective code easier to access, to modify and run. As an illustrative proof, for any immunologist, it should be possible to understand faithfully enough what the two software models are supposed to reproduce and how they execute with no need to plunge into the Java or Fortran lines. PMID:22844438

  6. State-Transition Diagrams for Biologists

    PubMed Central

    Bersini, Hugues; Klatzmann, David; Six, Adrien; Thomas-Vaslin, Véronique

    2012-01-01

    It is clearly in the tradition of biologists to conceptualize the dynamical evolution of biological systems in terms of state-transitions of biological objects. This paper is mainly concerned with (but obviously not limited too) the immunological branch of biology and shows how the adoption of UML (Unified Modeling Language) state-transition diagrams can ease the modeling, the understanding, the coding, the manipulation or the documentation of population-based immune software model generally defined as a set of ordinary differential equations (ODE), describing the evolution in time of populations of various biological objects. Moreover, that same UML adoption naturally entails a far from negligible representational economy since one graphical item of the diagram might have to be repeated in various places of the mathematical model. First, the main graphical elements of the UML state-transition diagram and how they can be mapped onto a corresponding ODE mathematical model are presented. Then, two already published immune models of thymocyte behavior and time evolution in the thymus, the first one originally conceived as an ODE population-based model whereas the second one as an agent-based one, are refactored and expressed in a state-transition form so as to make them much easier to understand and their respective code easier to access, to modify and run. As an illustrative proof, for any immunologist, it should be possible to understand faithfully enough what the two software models are supposed to reproduce and how they execute with no need to plunge into the Java or Fortran lines. PMID:22844438

  7. Tectonic discrimination diagrams revisited

    NASA Astrophysics Data System (ADS)

    Vermeesch, Pieter

    2006-06-01

    The decision boundaries of most tectonic discrimination diagrams are drawn by eye. Discriminant analysis is a statistically more rigorous way to determine the tectonic affinity of oceanic basalts based on their bulk-rock chemistry. This method was applied to a database of 756 oceanic basalts of known tectonic affinity (ocean island, mid-ocean ridge, or island arc). For each of these training data, up to 45 major, minor, and trace elements were measured. Discriminant analysis assumes multivariate normality. If the same covariance structure is shared by all the classes (i.e., tectonic affinities), the decision boundaries are linear, hence the term linear discriminant analysis (LDA). In contrast with this, quadratic discriminant analysis (QDA) allows the classes to have different covariance structures. To solve the statistical problems associated with the constant-sum constraint of geochemical data, the training data must be transformed to log-ratio space before performing a discriminant analysis. The results can be mapped back to the compositional data space using the inverse log-ratio transformation. An exhaustive exploration of 14,190 possible ternary discrimination diagrams yields the Ti-Si-Sr system as the best linear discrimination diagram and the Na-Nb-Sr system as the best quadratic discrimination diagram. The best linear and quadratic discrimination diagrams using only immobile elements are Ti-V-Sc and Ti-V-Sm, respectively. As little as 5% of the training data are misclassified by these discrimination diagrams. Testing them on a second database of 182 samples that were not part of the training data yields a more reliable estimate of future performance. Although QDA misclassifies fewer training data than LDA, the opposite is generally true for the test data. Therefore LDA is a cruder but more robust classifier than QDA. Another advantage of LDA is that it provides a powerful way to reduce the dimensionality of the multivariate geochemical data in a similar

  8. Representing Thoughts, Words, and Things in the UMLS

    PubMed Central

    Campbell, Keith E.; Oliver, Diane E.; Spackman, Kent A.; Shortliffe, Edward H.

    1998-01-01

    The authors describe a framework, based on the Ogden-Richards semiotic triangle, for understanding the relationship between the Unified Medical Language System (UMLS) and the source terminologies from which the UMLS derives its content. They pay particular attention to UMLS's Concept Unique Identifier (CUI) and the sense of “meaning” it represents as contrasted with the sense of “meaning” represented by the source terminologies. The CUI takes on emergent meaning through linkage to terms in different terminology systems. In some cases, a CUI's emergent meaning can differ significantly from the original sources' intended meanings of terms linked by that CUI. Identification of these different senses of meaning within the UMLS is consistent with historical themes of semantic interpretation of language. Examination of the UMLS within such a historical framework makes it possible to better understand the strengths and limitations of the UMLS approach for integrating disparate terminologic systems and to provide a model, or theoretic foundation, for evaluating the UMLS as a Possible World—that is, as a mathematical formalism that represents propositions about some perspective or interpretation of the physical world. PMID:9760390

  9. An Automated Approach to Transform Use Cases into Activity Diagrams

    NASA Astrophysics Data System (ADS)

    Yue, Tao; Briand, Lionel C.; Labiche, Yvan

    Use cases are commonly used to structure and document requirements while UML activity diagrams are often used to visualize and formalize use cases, for example to support automated test case generation. Therefore the automated support for the transition from use cases to activity diagrams would provide significant, practical help. Additionally, traceability could be established through automated transformation, which could then be used for instance to relate requirements to design decisions and test cases. In this paper, we propose an approach to automatically generate activity diagrams from use cases while establishing traceability links. Data flow information can also be generated and added to these activity diagrams. Our approach is implemented in a tool, which we used to perform five case studies. The results show that high quality activity diagrams can be generated. Our analysis also shows that our approach outperforms existing academic approaches and commercial tools.

  10. HRT-UML: a design method for hard real-time systems based on the UML notation

    NASA Astrophysics Data System (ADS)

    D'Alessandro, Massimo; Mazzini, Silvia; di Natale, Marco; Lipari, Giuseppe

    2002-07-01

    The Hard Real-Time-Unified Modelling Language (HRT-UML) method aims at providing a comprehensive solution to the modeling of Hard Real Time systems. The experience shows that the design of Hard Real-Time systems needs methodologies suitable for the modeling and analysis of aspects related to time, schedulability and performance. In the context of the European Aerospace community a reference method for design is Hierarchical Object Oriented Design (HOOD) and in particular its extension for the modeling of hard real time systems, Hard Real-Time-Hierarchical Object Oriented Design (HRT-HOOD), recommended by the European Space Agency (ESA) for the development of on-board systems. On the other hand in recent years the Unified Modelling Language (UML) has been gaining a very large acceptance in a wide range of domains, all over the world, becoming a de-facto international standard. Tool vendors are very active in this potentially big market. In the Aerospace domain the common opinion is that UML, as a general notation, is not suitable for Hard Real Time systems, even if its importance is recognized as a standard and as a technological trend in the near future. These considerations suggest the possibility of replacing the HRT-HOOD method with a customized version of UML, that incorporates the advantages of both standards and complements the weak points. This approach has the clear advantage of making HRT-HOOD converge on a more powerful and expressive modeling notation. The paper identifies a mapping of the HRT-HOOD semantics into the UML one, and proposes a UML extension profile, that we call HRT-UML, based on the UML standard extension mechanisms, to fully represent HRT-HOOD design concepts. Finally it discusses the relationships between our profile and the UML profile for schedulability, performance and time, adopted by OMG in November 2001.

  11. Semi-Supervised Learning to Identify UMLS Semantic Relations

    PubMed Central

    Luo, Yuan; Uzuner, Ozlem

    2014-01-01

    The UMLS Semantic Network is constructed by experts and requires periodic expert review to update. We propose and implement a semi-supervised approach for automatically identifying UMLS semantic relations from narrative text in PubMed. Our method analyzes biomedical narrative text to collect semantic entity pairs, and extracts multiple semantic, syntactic and orthographic features for the collected pairs. We experiment with seeded k-means clustering with various distance metrics. We create and annotate a ground truth corpus according to the top two levels of the UMLS semantic relation hierarchy. We evaluate our system on this corpus and characterize the learning curves of different clustering configuration. Using KL divergence consistently performs the best on the held-out test data. With full seeding, we obtain macro-averaged F-measures above 70% for clustering the top level UMLS relations (2-way), and above 50% for clustering the second level relations (7-way). PMID:25954580

  12. Evaluation of a UMLS Auditing Process of Semantic Type Assignments.

    PubMed

    Gu, Huanying Helen; Hripcsak, George; Chen, Yan; Morrey, C Paul; Elhanan, Gai; Cimino, James; Geller, James; Perl, Yehoshua

    2007-01-01

    The UMLS is a terminological system that integrates many source terminologies. Each concept in the UMLS is assigned one or more semantic types from the Semantic Network, an upper level ontology for biomedicine. Due to the complexity of the UMLS, errors exist in the semantic type assignments. Finding assignment errors may unearth modeling errors. Even with sophisticated tools, discovering assignment errors requires manual review. In this paper we describe the evaluation of an auditing project of UMLS semantic type assignments. We studied the performance of the auditors who reviewed potential errors. We found that four auditors, interacting according to a multi-step protocol, identified a high rate of errors (one or more errors in 81% of concepts studied) and that results were sufficiently reliable (0.67 to 0.70) for the two most common types of errors. However, reliability was low for each individual auditor, suggesting that review of potential errors is resource-intensive. PMID:18693845

  13. An Infrastructure for UML-Based Code Generation Tools

    NASA Astrophysics Data System (ADS)

    Wehrmeister, Marco A.; Freitas, Edison P.; Pereira, Carlos E.

    The use of Model-Driven Engineering (MDE) techniques in the domain of distributed embedded real-time systems are gain importance in order to cope with the increasing design complexity of such systems. This paper discusses an infrastructure created to build GenERTiCA, a flexible tool that supports a MDE approach, which uses aspect-oriented concepts to handle non-functional requirements from embedded and real-time systems domain. GenERTiCA generates source code from UML models, and also performs weaving of aspects, which have been specified within the UML model. Additionally, this paper discusses the Distributed Embedded Real-Time Compact Specification (DERCS), a PIM created to support UML-based code generation tools. Some heuristics to transform UML models into DERCS, which have been implemented in GenERTiCA, are also discussed.

  14. Assessing and enhancing the value of the UMLS Knowledge Sources.

    PubMed Central

    Humphreys, B. L.; Lindberg, D. A.; Hole, W. T.

    1991-01-01

    The goal of the UMLS Project is to give practitioners and researchers easy access to machine-readable information from diverse sources. Assessment of the first experimental versions of the UMLS Knowledge Sources is essential to measuring progress toward that goal and to identifying needed enhancements. As of July 30, 1991, copies of the first edition of the UMLS Knowledge Sources had been distributed to 143 individuals and institutions; 66 had provided initial feedback information. The information received indicates that the UMLS Knowledge Sources will undergo broad testing in the patient care, medical education, library service, and product development environments. Preliminary data support the hypothesis that expanded coverage of routine clinical concepts is needed. Key enhancements planned for 1992 and beyond include expanded coverage of ICD-9-CM and CPT. PMID:1807711

  15. Unambiguous UML Composite Structures: The OMEGA2 Experience

    NASA Astrophysics Data System (ADS)

    Ober, Iulian; Dragomir, Iulia

    Starting from version 2.0, UML introduced hierarchical composite structures, which are a very expressive way of defining complex software architectures, but which have a very loosely defined semantics in the standard. In this paper we propose a set of consistency rules that ensure UML composite structures are unambiguous and can be given a precise semantics. Our primary application of the static consistency rules defined in this paper is within the OMEGA UML profile [6], but these rules are general and applicable to other hierarchical component models based on the same concepts, such as MARTE GCM or SysML. The rule set has been formalized in OCL and is currently used in the OMEGA UML compiler.

  16. Evaluation of a UMLS Auditing Process of Semantic Type Assignments

    PubMed Central

    Gu, Huanying; Hripcsak, George; Chen, Yan; Morrey, C. Paul; Elhanan, Gai; Cimino, James J.; Geller, James; Perl, Yehoshua

    2007-01-01

    The UMLS is a terminological system that integrates many source terminologies. Each concept in the UMLS is assigned one or more semantic types from the Semantic Network, an upper level ontology for biomedicine. Due to the complexity of the UMLS, errors exist in the semantic type assignments. Finding assignment errors may unearth modeling errors. Even with sophisticated tools, discovering assignment errors requires manual review. In this paper we describe the evaluation of an auditing project of UMLS semantic type assignments. We studied the performance of the auditors who reviewed potential errors. We found that four auditors, interacting according to a multi-step protocol, identified a high rate of errors (one or more errors in 81% of concepts studied) and that results were sufficiently reliable (0.67 to 0.70) for the two most common types of errors. However, reliability was low for each individual auditor, suggesting that review of potential errors is resource-intensive. PMID:18693845

  17. Concrete and abstract Voronoi diagrams

    SciTech Connect

    Klein, R. )

    1989-01-01

    The Voronoi diagram of a set of sites is a partition of the plane into regions, one to each site, such that the region of each site contains all points of the plane that are closer to this site than to the other ones. Such partitions are of great importance to computer science and many other fields. The challenge is to compute Voronoi diagrams quickly. The problem is that their structure depends on the notion of distance and the sort of site. In this book the author proposes a unifying approach by introducing abstract Voronoi diagrams. These are based on the concept of bisecting curves which are required to have some simple properties that are actually possessed by most bisectors of concrete Voronoi diagrams. Abstract Voronoi diagrams can be computed efficiently and there exists a worst-case efficient algorithm of divide-and-conquer type that applies to all abstract Voronoi diagrams satisfying a certain constraint. The author shows that this constraint is fulfilled by the concrete diagrams based no large classes of metrics in the plane.

  18. Semantic Mappings and Locality of Nursing Diagnostic Concepts in UMLS

    PubMed Central

    Kim, Tae Youn; Coenen, Amy; Hardiker, Nicholas

    2011-01-01

    One solution for enhancing the interoperability between nursing information systems, given the availability of multiple nursing terminologies, is to cross-map existing nursing concepts. The Unified Medical Language System (UMLS) developed and distributed by the National Library of Medicine (NLM) is a knowledge resource containing cross-mappings of various terminologies in a unified framework. While the knowledge resource has been available for the last two decades, little research on the representation of nursing terminologies in UMLS has been conducted. As a first step, UMLS semantic mappings and concept locality were examined for nursing diagnostic concepts or problems selected from three terminologies (i.e., CCC, ICNP, and NANDA-I) along with corresponding SNOMED CT concepts. The evaluation of UMLS semantic mappings was conducted by measuring the proportion of concordance between UMLS and human expert mappings. The semantic locality of nursing diagnostic concepts was assessed by examining the associations of select concepts and the placement of the nursing concepts on the Semantic Network and Group. The study found that the UMLS mappings of CCC and NANDA-I concepts to SNOMED CT were highly concordant to expert mappings. The level of concordance in mappings of ICNP to SNOMED CT, CCC and NANDA-I within UMLS was relatively low, indicating the need for further research and development. Likewise, the semantic locality of ICNP concepts could be further improved. Various stakeholders need to collaborate to enhance the NLM knowledge resource and the interoperability of nursing data within the discipline as well as across health-related disciplines. PMID:21951759

  19. UML as a cell and biochemistry modeling language.

    PubMed

    Webb, Ken; White, Tony

    2005-06-01

    The systems biology community is building increasingly complex models and simulations of cells and other biological entities, and are beginning to look at alternatives to traditional representations such as those provided by ordinary differential equations (ODE). The lessons learned over the years by the software development community in designing and building increasingly complex telecommunication and other commercial real-time reactive systems, can be advantageously applied to the problems of modeling in the biology domain. Making use of the object-oriented (OO) paradigm, the unified modeling language (UML) and Real-Time Object-Oriented Modeling (ROOM) visual formalisms, and the Rational Rose RealTime (RRT) visual modeling tool, we describe a multi-step process we have used to construct top-down models of cells and cell aggregates. The simple example model described in this paper includes membranes with lipid bilayers, multiple compartments including a variable number of mitochondria, substrate molecules, enzymes with reaction rules, and metabolic pathways. We demonstrate the relevance of abstraction, reuse, objects, classes, component and inheritance hierarchies, multiplicity, visual modeling, and other current software development best practices. We show how it is possible to start with a direct diagrammatic representation of a biological structure such as a cell, using terminology familiar to biologists, and by following a process of gradually adding more and more detail, arrive at a system with structure and behavior of arbitrary complexity that can run and be observed on a computer. We discuss our CellAK (Cell Assembly Kit) approach in terms of features found in SBML, CellML, E-CELL, Gepasi, Jarnac, StochSim, Virtual Cell, and membrane computing systems. PMID:15888343

  20. Software cost estimation using class point metrics (CPM)

    NASA Astrophysics Data System (ADS)

    Ghode, Aditi; Periyasamy, Kasilingam

    2011-12-01

    Estimating cost for the software project is one of the most important and crucial task to maintain the software reliability. Many cost estimation models have been reported till now, but most of them have significant drawbacks due to rapid changes in the technology. For example, Source Line Of Code (SLOC) can only be counted when the software construction is complete. Function Point (FP) metric is deficient in handling Object Oriented Technology, as it was designed for procedural languages such as COBOL. Since Object-Oriented Programming became a popular development practice, most of the software companies started applying the Unified Modeling Language (UML). The objective of this research is to develop a new cost estimation model with the application of class diagram for the software cost estimation.

  1. Auditing SNOMED Integration into the UMLS for Duplicate Concepts

    PubMed Central

    Huang, Kuo-Chuan; Geller, James; Elhanan, Gai; Perl, Yehoshua; Halper, Michael

    2010-01-01

    The UMLS contains terms from many sources. Every update of a source requires reintegration. Each new term needs to be assigned to a preexisting UMLS concept, or a new concept must be created. Whenever the integration process unnecessarily creates a new concept, this is undesirable. We report on a method to detect such undesirable duplicate concepts. Terms are removed from the UMLS and reintegrated using “piecewise synonym generation.” The concept of the reintegrated term is programmatically compared to the initial concept of the term (before removal). If they are different, this indicates an error, either in the integration process or in the initial concept. Thus, such a term-concept pair is deemed suspicious. A study of five hierarchies of the SNOMED found 7.7% suspicious matches. A human expert needs to evaluate the correctness of suspicious concepts. In a sample of 149 of those, 19% of concepts were found to be duplicates. PMID:21346993

  2. Vehicle System Management Modeling in UML for Ares I

    NASA Technical Reports Server (NTRS)

    Pearson, Newton W.; Biehn, Bradley A.; Curry, Tristan D.; Martinez, Mario R.

    2011-01-01

    The Spacecraft & Vehicle Systems Department of Marshall Space Flight Center is responsible for modeling the Vehicle System Management for the Ares I vehicle which was a part of the now canceled Constellation Program. An approach to generating the requirements for the Vehicle System Management was to use the Unified Modeling Language technique to build and test a model that would fulfill the Vehicle System Management requirements. UML has been used on past projects (flight software) in the design phase of the effort but this was the first attempt to use the UML technique from a top down requirements perspective.

  3. Visualization of Learning Scenarios with UML4LD

    ERIC Educational Resources Information Center

    Laforcade, Pierre

    2007-01-01

    Present Educational Modelling Languages are used to formally specify abstract learning scenarios in a machine-interpretable format. Current tooling does not provide teachers/designers with some graphical facilities to help them in reusing existent scenarios. They need human-readable representations. This paper discusses the UML4LD experimental…

  4. Auto-Coding UML Statecharts for Flight Software

    NASA Technical Reports Server (NTRS)

    Benowitz, Edward G; Clark, Ken; Watney, Garth J.

    2006-01-01

    Statecharts have been used as a means to communicate behaviors in a precise manner between system engineers and software engineers. Hand-translating a statechart to code, as done on some previous space missions, introduces the possibility of errors in the transformation from chart to code. To improve auto-coding, we have developed a process that generates flight code from UML statecharts. Our process is being used for the flight software on the Space Interferometer Mission (SIM).

  5. Auditing the multiply-related concepts within the UMLS

    PubMed Central

    Mougin, Fleur; Grabar, Natalia

    2014-01-01

    Objective This work focuses on multiply-related Unified Medical Language System (UMLS) concepts, that is, concepts associated through multiple relations. The relations involved in such situations are audited to determine whether they are provided by source vocabularies or result from the integration of these vocabularies within the UMLS. Methods We study the compatibility of the multiple relations which associate the concepts under investigation and try to explain the reason why they co-occur. Towards this end, we analyze the relations both at the concept and term levels. In addition, we randomly select 288 concepts associated through contradictory relations and manually analyze them. Results At the UMLS scale, only 0.7% of combinations of relations are contradictory, while homogeneous combinations are observed in one-third of situations. At the scale of source vocabularies, one-third do not contain more than one relation between the concepts under investigation. Among the remaining source vocabularies, seven of them mainly present multiple non-homogeneous relations between terms. Analysis at the term level also shows that only in a quarter of cases are the source vocabularies responsible for the presence of multiply-related concepts in the UMLS. These results are available at: http://www.isped.u-bordeaux2.fr/ArticleJAMIA/results_multiply_related_concepts.aspx. Discussion Manual analysis was useful to explain the conceptualization difference in relations between terms across source vocabularies. The exploitation of source relations was helpful for understanding why some source vocabularies describe multiple relations between a given pair of terms. PMID:24464853

  6. Reliability computation from reliability block diagrams

    NASA Technical Reports Server (NTRS)

    Chelson, P. O.; Eckstein, R. E.

    1971-01-01

    A method and a computer program are presented to calculate probability of system success from an arbitrary reliability block diagram. The class of reliability block diagrams that can be handled include any active/standby combination of redundancy, and the computations include the effects of dormancy and switching in any standby redundancy. The mechanics of the program are based on an extension of the probability tree method of computing system probabilities.

  7. Students' Different Understandings of Class Diagrams

    ERIC Educational Resources Information Center

    Boustedt, Jonas

    2012-01-01

    The software industry needs well-trained software designers and one important aspect of software design is the ability to model software designs visually and understand what visual models represent. However, previous research indicates that software design is a difficult task to many students. This article reports empirical findings from a…

  8. Conceptual Model of Clinical Governance Information System for Statistical Indicators by Using UML in Two Sample Hospitals

    PubMed Central

    Jeddi, Fatemeh Rangraz; Farzandipoor, Mehrdad; Arabfard, Masoud; Hosseini, Azam Haj Mohammad

    2014-01-01

    Objective: The purpose of this study was investigating situation and presenting a conceptual model for clinical governance information system by using UML in two sample hospitals. Background: However, use of information is one of the fundamental components of clinical governance; but unfortunately, it does not pay much attention to information management. Material and Methods: A cross sectional study was conducted in October 2012- May 2013. Data were gathered through questionnaires and interviews in two sample hospitals. Face and content validity of the questionnaire has been confirmed by experts. Data were collected from a pilot hospital and reforms were carried out and Final questionnaire was prepared. Data were analyzed by descriptive statistics and SPSS 16 software. Results: With the scenario derived from questionnaires, UML diagrams are presented by using Rational Rose 7 software. The results showed that 32.14 percent Indicators of the hospitals were calculated. Database was not designed and 100 percent of the hospital’s clinical governance was required to create a database. Conclusion: Clinical governance unit of hospitals to perform its mission, do not have access to all the needed indicators. Defining of Processes and drawing of models and creating of database are essential for designing of information systems. PMID:24825933

  9. Conceptual Model of Clinical Governance Information System for Statistical Indicators by Using UML in Two Sample Hospitals

    PubMed Central

    Jeddi, Fatemeh Rangraz; Farzandipoor, Mehrdad; Arabfard, Masoud; Hosseini, Azam Haj Mohammad

    2016-01-01

    Objective: The purpose of this study was investigating situation and presenting a conceptual model for clinical governance information system by using UML in two sample hospitals. Background: However, use of information is one of the fundamental components of clinical governance; but unfortunately, it does not pay much attention to information management. Material and Methods: A cross sectional study was conducted in October 2012- May 2013. Data were gathered through questionnaires and interviews in two sample hospitals. Face and content validity of the questionnaire has been confirmed by experts. Data were collected from a pilot hospital and reforms were carried out and Final questionnaire was prepared. Data were analyzed by descriptive statistics and SPSS 16 software. Results: With the scenario derived from questionnaires, UML diagrams are presented by using Rational Rose 7 software. The results showed that 32.14 percent Indicators of the hospitals were calculated. Database was not designed and 100 percent of the hospital’s clinical governance was required to create a database. Conclusion: Clinical governance unit of hospitals to perform its mission, do not have access to all the needed indicators. Defining of Processes and drawing of models and creating of database are essential for designing of information systems. PMID:27147804

  10. Gravity wave transmission diagram

    NASA Astrophysics Data System (ADS)

    Tomikawa, Yoshihiro

    2016-07-01

    A possibility of gravity wave propagation from a source region to the airglow layer around the mesopause has been discussed based on the gravity wave blocking diagram taking into account the critical level filtering alone. This paper proposes a new gravity wave transmission diagram in which both the critical level filtering and turning level reflection of gravity waves are considered. It shows a significantly different distribution of gravity wave transmissivity from the blocking diagram.

  11. Effectively processing medical term queries on the UMLS Metathesaurus by layered dynamic programming

    PubMed Central

    2014-01-01

    Background Mapping medical terms to standardized UMLS concepts is a basic step for leveraging biomedical texts in data management and analysis. However, available methods and tools have major limitations in handling queries over the UMLS Metathesaurus that contain inaccurate query terms, which frequently appear in real world applications. Methods To provide a practical solution for this task, we propose a layered dynamic programming mapping (LDPMap) approach, which can efficiently handle these queries. LDPMap uses indexing and two layers of dynamic programming techniques to efficiently map a biomedical term to a UMLS concept. Results Our empirical study shows that LDPMap achieves much faster query speeds than LCS. In comparison to the UMLS Metathesaurus Browser and MetaMap, LDPMap is much more effective in querying the UMLS Metathesaurus for inaccurately spelled medical terms, long medical terms, and medical terms with special characters. Conclusions These results demonstrate that LDPMap is an efficient and effective method for mapping medical terms to the UMLS Metathesaurus. PMID:25079259

  12. SSBRP Communication & Data System Development using the Unified Modeling Language (UML)

    NASA Technical Reports Server (NTRS)

    Windrem, May; Picinich, Lou; Givens, John J. (Technical Monitor)

    1998-01-01

    The Unified Modeling Language (UML) is the standard method for specifying, visualizing, and documenting the artifacts of an object-oriented system under development. UML is the unification of the object-oriented methods developed by Grady Booch and James Rumbaugh, and of the Use Case Model developed by Ivar Jacobson. This paper discusses the application of UML by the Communications and Data Systems (CDS) team to model the ground control and command of the Space Station Biological Research Project (SSBRP) User Operations Facility (UOF). UML is used to define the context of the system, the logical static structure, the life history of objects, and the interactions among objects.

  13. Associating clinical archetypes through UMLS Metathesaurus term clusters.

    PubMed

    Lezcano, Leonardo; Sánchez-Alonso, Salvador; Sicilia, Miguel-Angel

    2012-06-01

    Clinical archetypes are modular definitions of clinical data, expressed using standard or open constraint-based data models as the CEN EN13606 and openEHR. There is an increasing archetype specification activity that raises the need for techniques to associate archetypes to support better management and user navigation in archetype repositories. This paper reports on a computational technique to generate tentative archetype associations by mapping them through term clusters obtained from the UMLS Metathesaurus. The terms are used to build a bipartite graph model and graph connectivity measures can be used for deriving associations. PMID:20827566

  14. Hertzsprung-Russell Diagram

    NASA Astrophysics Data System (ADS)

    Chiosi, C.; Murdin, P.

    2000-11-01

    The Hertzsprung-Russell diagram (HR-diagram), pioneered independently by EJNAR HERTZSPRUNG and HENRY NORRIS RUSSELL, is a plot of the star luminosity versus the surface temperature. It stems from the basic relation for an object emitting thermal radiation as a black body: ...

  15. Dependability Modeling and Assessment in UML-Based Software Development

    PubMed Central

    Bernardi, Simona; Merseguer, José; Petriu, Dorina C.

    2012-01-01

    Assessment of software nonfunctional properties (NFP) is an important problem in software development. In the context of model-driven development, an emerging approach for the analysis of different NFPs consists of the following steps: (a) to extend the software models with annotations describing the NFP of interest; (b) to transform automatically the annotated software model to the formalism chosen for NFP analysis; (c) to analyze the formal model using existing solvers; (d) to assess the software based on the results and give feedback to designers. Such a modeling→analysis→assessment approach can be applied to any software modeling language, be it general purpose or domain specific. In this paper, we focus on UML-based development and on the dependability NFP, which encompasses reliability, availability, safety, integrity, and maintainability. The paper presents the profile used to extend UML with dependability information, the model transformation to generate a DSPN formal model, and the assessment of the system properties based on the DSPN results. PMID:22988428

  16. Dependability modeling and assessment in UML-based software development.

    PubMed

    Bernardi, Simona; Merseguer, José; Petriu, Dorina C

    2012-01-01

    Assessment of software nonfunctional properties (NFP) is an important problem in software development. In the context of model-driven development, an emerging approach for the analysis of different NFPs consists of the following steps: (a) to extend the software models with annotations describing the NFP of interest; (b) to transform automatically the annotated software model to the formalism chosen for NFP analysis; (c) to analyze the formal model using existing solvers; (d) to assess the software based on the results and give feedback to designers. Such a modeling→analysis→assessment approach can be applied to any software modeling language, be it general purpose or domain specific. In this paper, we focus on UML-based development and on the dependability NFP, which encompasses reliability, availability, safety, integrity, and maintainability. The paper presents the profile used to extend UML with dependability information, the model transformation to generate a DSPN formal model, and the assessment of the system properties based on the DSPN results. PMID:22988428

  17. Leveraging the UML Metamodel: Expressing ORM Semantics Using a UML Profile

    SciTech Connect

    CUYLER,DAVID S.

    2000-11-01

    Object Role Modeling (ORM) techniques produce a detailed domain model from the perspective of the business owner/customer. The typical process begins with a set of simple sentences reflecting facts about the business. The output of the process is a single model representing primarily the persistent information needs of the business. This type of model contains little, if any reference to a targeted computerized implementation. It is a model of business entities not of software classes. Through well-defined procedures, an ORM model can be transformed into a high quality objector relational schema.

  18. CoLeMo: A Collaborative Learning Environment for UML Modelling

    ERIC Educational Resources Information Center

    Chen, Weiqin; Pedersen, Roger Heggernes; Pettersen, Oystein

    2006-01-01

    This paper presents the design, implementation, and evaluation of a distributed collaborative UML modelling environment, CoLeMo. CoLeMo is designed for students studying UML modelling. It can also be used as a platform for collaborative design of software. We conducted formative evaluations and a summative evaluation to improve the environment and…

  19. Source authenticity in the UMLS--a case study of the Minimal Standard Terminology.

    PubMed

    Elhanan, Gai; Huang, Kuo-Chuan; Perl, Yehoshua

    2010-12-01

    As the UMLS integrates multiple source vocabularies, the integration process requires that certain adaptation be applied to the source. Our interest is in examining the relationship between the UMLS representation of a source vocabulary and the source vocabulary itself. We investigated the integration of the Minimal Standard Terminology (MST) into the UMLS in order to examine how close its UMLS representation is to the source MST. The MST was conceived as a "minimal" list of terms and structure intended for use within computer systems to facilitate standardized reporting of gastrointestinal endoscopic examinations. Although the MST has an overall schema and implied relationship structure, many of the UMLS integrated MST terms were found to be hierarchically orphaned, and with lateral relationships that do not closely adhere to the source MST. Thus, the MST representation within the UMLS significantly differs from that of the source MST. These representation discrepancies may affect the usability of the MST representation in the UMLS for knowledge acquisition. Furthermore, they pose a problem from the perspective of application developers. While these findings may not necessarily apply to other source terminologies, they highlight the conflict between preservation of authentic concept orientation and the UMLS overall desire to provide fully specified names for all source terms. PMID:20692366

  20. Square Source Type Diagram

    NASA Astrophysics Data System (ADS)

    Aso, N.; Ohta, K.; Ide, S.

    2014-12-01

    Deformation in a small volume of earth interior is expressed by a symmetric moment tensor located on a point source. The tensor contains information of characteristic directions, source amplitude, and source types such as isotropic, double-couple, or compensated-linear-vector-dipole (CLVD). Although we often assume a double couple as the source type of an earthquake, significant non-double-couple component including isotropic component is often reported for induced earthquakes and volcanic earthquakes. For discussions on source types including double-couple and non-double-couple components, it is helpful to display them using some visual diagrams. Since the information of source type has two degrees of freedom, it can be displayed onto a two-dimensional flat plane. Although the diagram developed by Hudson et al. [1989] is popular, the trace corresponding to the mechanism combined by two mechanisms is not always a smooth line. To overcome this problem, Chapman and Leaney [2012] developed a new diagram. This diagram has an advantage that a straight line passing through the center corresponds to the mechanism obtained by a combination of an arbitrary mechanism and a double-couple [Tape and Tape, 2012], but this diagram has some difficulties in use. First, it is slightly difficult to produce the diagram because of its curved shape. Second, it is also difficult to read out the ratios among isotropic, double-couple, and CLVD components, which we want to obtain from the estimated moment tensors, because they do not appear directly on the horizontal or vertical axes. In the present study, we developed another new square diagram that overcomes the difficulties of previous diagrams. This diagram is an orthogonal system of isotropic and deviatoric axes, so it is easy to get the ratios among isotropic, double-couple, and CLVD components. Our diagram has another advantage that the probability density is obtained simply from the area within the diagram if the probability density

  1. Corpus-based Approach to Creating a Semantic Lexicon for Clinical Research Eligibility Criteria from UMLS

    PubMed Central

    Luo, Zhihui; Duffy, Robert; Johnson, Stephen; Weng, Chunhua

    2010-01-01

    We describe a corpus-based approach to creating a semantic lexicon using UMLS knowledge sources. We extracted 10,000 sentences from the eligibility criteria sections of clinical trial summaries contained in ClinicalTrials.gov. The UMLS Metathesaurus and SPECIALIST Lexical Tools were used to extract and normalize UMLS recognizable terms. When annotated with Semantic Network types, the corpus had a lexical ambiguity of 1.57 (=total types for unique lexemes / total unique lexemes) and a word occurrence ambiguity of 1.96 (=total type occurrences / total word occurrences). A set of semantic preference rules was developed and applied to completely eliminate ambiguity in semantic type assignment. The lexicon covered 95.95% UMLS-recognizable terms in our corpus. A total of 20 UMLS semantic types, representing about 17% of all the distinct semantic types assigned to corpus lexemes, covered about 80% of the vocabulary of our corpus. PMID:21347142

  2. Searching for information on the Internet using the UMLS and Medical World Search.

    PubMed Central

    Suarez, H. H.; Hao, X.; Chang, I. F.

    1997-01-01

    Medical World Search is a search engine for medical information on the Internet that distinguishes itself from other search engines by its built-in knowledge of medical terminology through its use of the National Library of Medicine's UMLS and its carefully selected but large database of medical sites. After discussing some of the previous uses of the UMLS for medical information retrieval, we describe the Medical World Search system. In October 1996, Medical World Search became operational on the World Wide Web at http:@www.mwsearch.poly.edu. It has been operating uninterrupted since then. We review our experiences with creating a search engine for medical information on the Internet and using the UMLS in this application. The UMLS has some clear advantages in this application. Some aspects of the UMLS also decrease its usefulness in information retrieval. Medical World Search's usage by medical information seekers is summarized. future directions for research are outlined. PMID:9357740

  3. Using the UMLS to represent medical curriculum content.

    PubMed Central

    Kanter, S. L.

    1993-01-01

    Recent innovations in medical education have highlighted the need for faculty involved with the curriculum to carefully examine curricular content with goals of detecting omissions and unwanted redundancies of subject matter, adding and integrating new content, and deleting old content. A number of medical schools have attempted to deal with these issues by developing a database of curricular content information, most often using faculty- or student-selected keywords to represent each unit of instruction. However, several problems have been identified with this method, and achieving the goals mentioned above remains a formidable task. This paper outlines an alternative method that uses the resources of the UMLS to characterize a medical concept by the semantic types of its co-occurring terms. This approach can facilitate achievement of the aforementioned goals. PMID:8130579

  4. Visual Modelling of Data Warehousing Flows with UML Profiles

    NASA Astrophysics Data System (ADS)

    Pardillo, Jesús; Golfarelli, Matteo; Rizzi, Stefano; Trujillo, Juan

    Data warehousing involves complex processes that transform source data through several stages to deliver suitable information ready to be analysed. Though many techniques for visual modelling of data warehouses from the static point of view have been devised, only few attempts have been made to model the data flows involved in a data warehousing process. Besides, each attempt was mainly aimed at a specific application, such as ETL, OLAP, what-if analysis, data mining. Data flows are typically very complex in this domain; for this reason, we argue, designers would greatly benefit from a technique for uniformly modelling data warehousing flows for all applications. In this paper, we propose an integrated visual modelling technique for data cubes and data flows. This technique is based on UML profiling; its feasibility is evaluated by means of a prototype implementation.

  5. Auditing Hierarchical Cycles to Locate Other Inconsistencies in the UMLS

    PubMed Central

    Halper, Michael; Morrey, C. Paul; Chen, Yan; Elhanan, Gai; Hripcsak, George; Perl, Yehoshua

    2011-01-01

    A cycle in the parent relationship hierarchy of the UMLS is a configuration that effectively makes some concept(s) an ancestor of itself. Such a structural inconsistency can easily be found automatically. A previous strategy for disconnecting cycles is to break them with the deletion of one or more parent relationships—irrespective of the correctness of the deleted relationships. A methodology is introduced for auditing of cycles that seeks to discover and delete erroneous relationships only. Cycles involving three concepts are the primary consideration. Hypotheses about the high probability of locating an erroneous parent relationship in a cycle are proposed and confirmed with statistical confidence and lend credence to the auditing approach. A cycle may serve as an indicator of other non-structural inconsistencies that are otherwise difficult to detect automatically. An extensive auditing example shows how a cycle can indicate further inconsistencies. PMID:22195107

  6. A collaborative medical case authoring environment based on the UMLS.

    PubMed

    Suebnukarn, Siriwan; Haddawy, Peter; Rhienmora, Phattanapon

    2008-04-01

    In this paper, we present a novel collaborative authoring tool that was designed to allow medical teachers to formalize and visualize their knowledge for medical intelligent tutoring systems. Our goal is to increase the efficiency and effectiveness in creating the domain model representing the problem solution--often referred to as the bottleneck in developing intelligent tutoring systems. We incorporate the Unified Medical Language System (UMLS) knowledge base to assist the authors in creating the problem solution collaboratively via a videoconferencing platform. The system consists of a shared workspace gathering information visualization and tools necessary for collaborative problem-solving tasks. We found that the authoring tool can be used to effectively elicit the knowledge structure of the domain model. This was achieved in hours compared to months for the conventional paper-based approach. PMID:17920337

  7. Weyl card diagrams

    SciTech Connect

    Jones, Gregory; Wang, John E.

    2005-06-15

    To capture important physical properties of a spacetime we construct a new diagram, the card diagram, which accurately draws generalized Weyl spacetimes in arbitrary dimensions by encoding their global spacetime structure, singularities, horizons, and some aspects of causal structure including null infinity. Card diagrams draw only nontrivial directions providing a clearer picture of the geometric features of spacetimes as compared to Penrose diagrams, and can change continuously as a function of the geometric parameters. One of our main results is to describe how Weyl rods are traversable horizons and the entirety of the spacetime can be mapped out. We review Weyl techniques and as examples we systematically discuss properties of a variety of solutions including Kerr-Newman black holes, black rings, expanding bubbles, and recent spacelike-brane solutions. Families of solutions will share qualitatively similar cards. In addition we show how card diagrams not only capture information about a geometry but also its analytic continuations by providing a geometric picture of analytic continuation. Weyl techniques are generalized to higher dimensional charged solutions and applied to generate perturbations of bubble and S-brane solutions by Israel-Khan rods.

  8. Upgrading Diagnostic Diagrams

    NASA Astrophysics Data System (ADS)

    Proxauf, B.; Kimeswenger, S.; Öttl, S.

    2014-04-01

    Diagnostic diagrams of forbidden lines have been a useful tool for observers in astrophysics for many decades now. They are used to obtain information on the basic physical properties of thin gaseous nebulae. Moreover they are also the initial tool to derive thermodynamic properties of the plasma from observations to get ionization correction factors and thus to obtain proper abundances of the nebulae. Some diagnostic diagrams are in wavelengths domains which were difficult to take either due to missing wavelength coverage or low resolution of older spectrographs. Thus they were hardly used in the past. An upgrade of this useful tool is necessary because most of the diagrams were calculated using only the species involved as a single atom gas, although several are affected by well-known fluorescence mechanisms as well. Additionally the atomic data have improved up to the present time. The new diagnostic diagrams are calculated by using large grids of parameter space in the photoionization code CLOUDY. For a given basic parameter the input radiation field is varied to find the solutions with cooling-heating-equilibrium. Empirical numerical functions are fitted to provide formulas usable in e.g. data reduction pipelines. The resulting diagrams differ significantly from those used up to now and will improve the thermodynamic calculations.

  9. Trace element indiscrimination diagrams

    NASA Astrophysics Data System (ADS)

    Li, Chusi; Arndt, Nicholas T.; Tang, Qingyan; Ripley, Edward M.

    2015-09-01

    We tested the accuracy of trace element discrimination diagrams for basalts using new datasets from two petrological databases, PetDB and GEOROC. Both binary and ternary diagrams using Zr, Ti, V, Y, Th, Hf, Nb, Ta, Sm, and Sc do a poor job of discriminating between basalts generated in various tectonic environments (continental flood basalt, mid-ocean ridge basalt, ocean island basalt, oceanic plateau basalt, back-arc basin basalt, and various types of arc basalt). The overlaps between the different types of basalt are too large for the confident application of such diagrams when used in the absence of geological and petrological constraints. None of the diagrams we tested can clearly discriminate between back-arc basin basalt and mid-ocean ridge basalt, between continental flood basalt and oceanic plateau basalt, and between different types of arc basalt (intra-oceanic, island and continental arcs). Only ocean island basalt and some mid-ocean ridge basalt are generally distinguishable in the diagrams, and even in this case, mantle-normalized trace element patterns offer a better solution for discriminating between the two types of basalt.

  10. Weyl card diagrams

    NASA Astrophysics Data System (ADS)

    Jones, Gregory; Wang, John E.

    2005-06-01

    To capture important physical properties of a spacetime we construct a new diagram, the card diagram, which accurately draws generalized Weyl spacetimes in arbitrary dimensions by encoding their global spacetime structure, singularities, horizons, and some aspects of causal structure including null infinity. Card diagrams draw only nontrivial directions providing a clearer picture of the geometric features of spacetimes as compared to Penrose diagrams, and can change continuously as a function of the geometric parameters. One of our main results is to describe how Weyl rods are traversable horizons and the entirety of the spacetime can be mapped out. We review Weyl techniques and as examples we systematically discuss properties of a variety of solutions including Kerr-Newman black holes, black rings, expanding bubbles, and recent spacelike-brane solutions. Families of solutions will share qualitatively similar cards. In addition we show how card diagrams not only capture information about a geometry but also its analytic continuations by providing a geometric picture of analytic continuation. Weyl techniques are generalized to higher dimensional charged solutions and applied to generate perturbations of bubble and S-brane solutions by Israel-Khan rods.

  11. k-neighborhood Decentralization: A Comprehensive Solution to Index the UMLS for Large Scale Knowledge Discovery

    PubMed Central

    Xiang, Yang; Lu, Kewei; James, Stephen L.; Borlawsky, Tara B.; Huang, Kun; Payne, Philip R.O.

    2011-01-01

    The Unified Medical Language System (UMLS) is the largest thesaurus in the biomedical informatics domain. Previous works have shown that knowledge constructs comprised of transitively-associated UMLS concepts are effective for discovering potentially novel biomedical hypotheses. However, the extremely large size of the UMLS becomes a major challenge for these applications. To address this problem, we designed a k-neighborhood Decentralization Labeling Scheme (kDLS) for the UMLS, and the corresponding method to effectively evaluate the kDLS indexing results. kDLS provides a comprehensive solution for indexing the UMLS for very efficient large scale knowledge discovery. We demonstrated that it is highly effective to use kDLS paths to prioritize disease-gene relations across the whole genome, with extremely high fold-enrichment values. To our knowledge, this is the first indexing scheme capable of supporting efficient large scale knowledge discovery on the UMLS as a whole. Our expectation is that kDLS will become a vital engine for retrieving information and generating hypotheses from the UMLS for future medical informatics applications. PMID:22154838

  12. Impulse-Momentum Diagrams

    ERIC Educational Resources Information Center

    Rosengrant, David

    2011-01-01

    Multiple representations are a valuable tool to help students learn and understand physics concepts. Furthermore, representations help students learn how to think and act like real scientists. These representations include: pictures, free-body diagrams, energy bar charts, electrical circuits, and, more recently, computer simulations and…

  13. Non-planar on-shell diagrams

    NASA Astrophysics Data System (ADS)

    Franco, Sebastián; Galloni, Daniele; Penante, Brenda; Wen, Congkao

    2015-06-01

    We initiate a systematic study of non-planar on-shell diagrams in SYM and develop powerful technology for doing so. We introduce canonical variables generalizing face variables, which make the d log form of the on-shell form explicit. We make significant progress towards a general classification of arbitrary on-shell diagrams by means of two classes of combinatorial objects: generalized matching and matroid polytopes. We propose a boundary measurement that connects general on-shell diagrams to the Grassmannian. Our proposal exhibits two important and non-trivial properties: positivity in the planar case and it matches the combinatorial description of the diagrams in terms of generalized matroid polytopes. Interestingly, non-planar diagrams exhibit novel phenomena, such as the emergence of constraints on Plücker coordinates beyond Plücker relations when deleting edges, which are neatly captured by the generalized matching and matroid polytopes. This behavior is tied to the existence of a new type of poles in the on-shell form at which combinations of Plücker coordinates vanish. Finally, we introduce a prescription, applicable beyond the MHV case, for writing the on-shell form as a function of minors directly from the graph.

  14. Automatic Resolution of Ambiguous Terms Based on Machine Learning and Conceptual Relations in the UMLS

    PubMed Central

    Liu, Hongfang; Johnson, Stephen B.; Friedman, Carol

    2002-01-01

    Motivation. The UMLS has been used in natural language processing applications such as information retrieval and information extraction systems. The mapping of free-text to UMLS concepts is important for these applications. To improve the mapping, we need a method to disambiguate terms that possess multiple UMLS concepts. In the general English domain, machine-learning techniques have been applied to sense-tagged corpora, in which senses (or concepts) of ambiguous terms have been annotated (mostly manually). Sense disambiguation classifiers are then derived to determine senses (or concepts) of those ambiguous terms automatically. However, manual annotation of a corpus is an expensive task. We propose an automatic method that constructs sense-tagged corpora for ambiguous terms in the UMLS using MEDLINE abstracts. Methods. For a term W that represents multiple UMLS concepts, a collection of MEDLINE abstracts that contain W is extracted. For each abstract in the collection, occurrences of concepts that have relations with W as defined in the UMLS are automatically identified. A sense-tagged corpus, in which senses of W are annotated, is then derived based on those identified concepts. The method was evaluated on a set of 35 frequently occurring ambiguous biomedical abbreviations using a gold standard set that was automatically derived. The quality of the derived sense-tagged corpus was measured using precision and recall. Results. The derived sense-tagged corpus had an overall precision of 92.9% and an overall recall of 47.4%. After removing rare senses and ignoring abbreviations with closely related senses, the overall precision was 96.8% and the overall recall was 50.6%. Conclusions. UMLS conceptual relations and MEDLINE abstracts can be used to automatically acquire knowledge needed for resolving ambiguity when mapping free-text to UMLS concepts. PMID:12386113

  15. Displaying multimedia environmental partitioning by triangular diagrams

    SciTech Connect

    Lee, S.C.; Mackay, D.

    1995-11-01

    It is suggested that equilateral triangular diagrams are a useful method of depicting the equilibrium partitioning of organic chemicals among the three primary environmental media of the atmosphere, the hydrosphere, and the organosphere (natural organic matter and biotic lipids and waxes). The technique is useful for grouping chemicals into classes according to their partitioning tendencies, for depicting the incremental effects of substituents such as alkyl groups and chlorine, and for showing how partitioning changes in response to changes in temperature.

  16. Impulse-Momentum Diagrams

    NASA Astrophysics Data System (ADS)

    Rosengrant, David

    2011-01-01

    Multiple representations are a valuable tool to help students learn and understand physics concepts. Furthermore, representations help students learn how to think and act like real scientists.2 These representations include: pictures, free-body diagrams,3 energy bar charts,4 electrical circuits, and, more recently, computer simulations and animations.5 However, instructors have limited choices when they want to help their students understand impulse and momentum. One of the only available options is the impulse-momentum bar chart.6 The bar charts can effectively show the magnitude of the momentum as well as help students understand conservation of momentum, but they do not easily show the actual direction. This paper highlights a new representation instructors can use to help their students with momentum and impulse—the impulse-momentum diagram (IMD).

  17. TEP process flow diagram

    SciTech Connect

    Wilms, R Scott; Carlson, Bryan; Coons, James; Kubic, William

    2008-01-01

    This presentation describes the development of the proposed Process Flow Diagram (PFD) for the Tokamak Exhaust Processing System (TEP) of ITER. A brief review of design efforts leading up to the PFD is followed by a description of the hydrogen-like, air-like, and waterlike processes. Two new design values are described; the mostcommon and most-demanding design values. The proposed PFD is shown to meet specifications under the most-common and mostdemanding design values.

  18. Nonthermal Radio Emission and the HR Diagram

    NASA Technical Reports Server (NTRS)

    Gibson, D. M.

    1985-01-01

    Perhaps the most reliable indicator of non-radiative heating/momentum in a stellar atmosphere is the presence of nonthermal radio emission. To date, 77 normal stellar objects have been detected and identified as nonthermal sources. These stellar objects are tabulated herein. It is apparent that non-thermal radio emission is not ubiquitous across the HR diagram. This is clearly the case for the single stars; it is not as clear for the binaries unless the radio emission is associated with their late-type components. Choosing to make this association, the single stars and the late-type components are plotted together. The following picture emerges: (1) there are four locations on the HR diagram where non-thermal radio stars are found; (2) the peak incoherent 5 GHz luminosities show a suprisingly small range for stars within each class; (3) the fraction of stellar energy that escapes as radio emission can be estimated by comparing the integrated maximum radio luminosity to the bolometric luminosity; (4) there are no apparent differences in L sub R between binaries with two cool components, binaries with one hot and one cool component, and single stars for classes C and D; and (5) The late-type stars (classes B, C, and D) are located in parts of the HR diagram where there is reason to suspect that the surfaces of the stars are being braked with respect to their interiors.

  19. Wilson Loop Diagrams and Positroids

    NASA Astrophysics Data System (ADS)

    Agarwala, Susama; Marin-Amat, Eloi

    2016-07-01

    In this paper, we study a new application of the positive Grassmannian to Wilson loop diagrams (or MHV diagrams) for scattering amplitudes in N= 4 Super Yang-Mill theory (N = 4 SYM). There has been much interest in studying this theory via the positive Grassmannians using BCFW recursion. This is the first attempt to study MHV diagrams for planar Wilson loop calculations (or planar amplitudes) in terms of positive Grassmannians. We codify Wilson loop diagrams completely in terms of matroids. This allows us to apply the combinatorial tools in matroid theory used to identify positroids (non-negative Grassmannians) to Wilson loop diagrams. In doing so, we find that certain non-planar Wilson loop diagrams define positive Grassmannians. While non-planar diagrams do not have physical meaning, this finding suggests that they may have value as an algebraic tool, and deserve further investigation.

  20. Uml2 is a novel CalB-type lipase of Ustilago maydis with phospholipase A activity.

    PubMed

    Buerth, Christoph; Kovacic, Filip; Stock, Janpeter; Terfrüchte, Marius; Wilhelm, Susanne; Jaeger, Karl-Erich; Feldbrügge, Michael; Schipper, Kerstin; Ernst, Joachim F; Tielker, Denis

    2014-06-01

    CalB of Pseudozyma aphidis (formerly named Candida antarctica) is one of the most widely applied enzymes in industrial biocatalysis. Here, we describe a protein with 66 % sequence identity to CalB, designated Ustilago maydis lipase 2 (Uml2), which was identified as the product of gene um01422 of the corn smut fungus U. maydis. Sequence analysis of Uml2 revealed the presence of a typical lipase catalytic triad, Ser-His-Asp with Ser125 located in a Thr-Xaa-Ser-Xaa-Gly pentapeptide. Deletion of the uml2 gene in U. maydis diminished the ability of cells to hydrolyse fatty acids from tributyrin or Tween 20/80 substrates, thus demonstrating that Uml2 functions as a lipase that may contribute to nutrition of this fungal pathogen. Uml2 was heterologously produced in Pichia pastoris and recombinant N-glycosylated Uml2 protein was purified from the culture medium. Purified Uml2 released short- and long-chain fatty acids from p-nitrophenyl esters and Tween 20/80 substrates. Furthermore, phosphatidylcholine substrates containing long-chain saturated or unsaturated fatty acids were effectively hydrolysed. Both esterase and phospholipase A activity of Uml2 depended on the Ser125 catalytic residue. These results indicate that Uml2, in contrast to CalB, exhibits not only esterase and lipase activity but also phospholipase A activity. Thus, by genome mining, we identified a novel CalB-like lipase with different substrate specificities. PMID:24469105

  1. Warped penguin diagrams

    SciTech Connect

    Csaki, Csaba; Grossman, Yuval; Tanedo, Philip; Tsai, Yuhsin

    2011-04-01

    We present an analysis of the loop-induced magnetic dipole operator in the Randall-Sundrum model of a warped extra dimension with anarchic bulk fermions and an IR brane-localized Higgs. These operators are finite at one-loop order and we explicitly calculate the branching ratio for {mu}{yields}e{gamma} using the mixed position/momentum space formalism. The particular bound on the anarchic Yukawa and Kaluza-Klein (KK) scales can depend on the flavor structure of the anarchic matrices. It is possible for a generic model to either be ruled out or unaffected by these bounds without any fine-tuning. We quantify how these models realize this surprising behavior. We also review tree-level lepton flavor bounds in these models and show that these are on the verge of tension with the {mu}{yields}e{gamma} bounds from typical models with a 3 TeV Kaluza-Klein scale. Further, we illuminate the nature of the one-loop finiteness of these diagrams and show how to accurately determine the degree of divergence of a five-dimensional loop diagram using both the five-dimensional and KK formalism. This power counting can be obfuscated in the four-dimensional Kaluza-Klein formalism and we explicitly point out subtleties that ensure that the two formalisms agree. Finally, we remark on the existence of a perturbative regime in which these one-loop results give the dominant contribution.

  2. Consumer Health Concepts That Do Not Map to the UMLS: Where Do They Fit?

    PubMed Central

    Keselman, Alla; Smith, Catherine Arnott; Divita, Guy; Kim, Hyeoneui; Browne, Allen C.; Leroy, Gondy; Zeng-Treitler, Qing

    2008-01-01

    Objective This study has two objectives: first, to identify and characterize consumer health terms not found in the Unified Medical Language System (UMLS) Metathesaurus (2007 AB); second, to describe the procedure for creating new concepts in the process of building a consumer health vocabulary. How do the unmapped consumer health concepts relate to the existing UMLS concepts? What is the place of these new concepts in professional medical discourse? Design The consumer health terms were extracted from two large corpora derived in the process of Open Access Collaboratory Consumer Health Vocabulary (OAC CHV) building. Terms that could not be mapped to existing UMLS concepts via machine and manual methods prompted creation of new concepts, which were then ascribed semantic types, related to existing UMLS concepts, and coded according to specified criteria. Results This approach identified 64 unmapped concepts, 17 of which were labeled as uniquely “lay” and not feasible for inclusion in professional health terminologies. The remaining terms constituted potential candidates for inclusion in professional vocabularies, or could be constructed by post-coordinating existing UMLS terms. The relationship between new and existing concepts differed depending on the corpora from which they were extracted. Conclusion Non-mapping concepts constitute a small proportion of consumer health terms, but a proportion that is likely to affect the process of consumer health vocabulary building. We have identified a novel approach for identifying such concepts. PMID:18436906

  3. Penguin-like diagrams from the standard model

    NASA Astrophysics Data System (ADS)

    Ping, Chia Swee

    2015-04-01

    The Standard Model is highly successful in describing the interactions of leptons and quarks. There are, however, rare processes that involve higher order effects in electroweak interactions. One specific class of processes is the penguin-like diagram. Such class of diagrams involves the neutral change of quark flavours accompanied by the emission of a gluon (gluon penguin), a photon (photon penguin), a gluon and a photon (gluon-photon penguin), a Z-boson (Z penguin), or a Higgs-boson (Higgs penguin). Such diagrams do not arise at the tree level in the Standard Model. They are, however, induced by one-loop effects. In this paper, we present an exact calculation of the penguin diagram vertices in the `tHooft-Feynman gauge. Renormalization of the vertex is effected by a prescription by Chia and Chong which gives an expression for the counter term identical to that obtained by employing Ward-Takahashi identity. The on-shell vertex functions for the penguin diagram vertices are obtained. The various penguin diagram vertex functions are related to one another via Ward-Takahashi identity. From these, a set of relations is obtained connecting the vertex form factors of various penguin diagrams. Explicit expressions for the gluon-photon penguin vertex form factors are obtained, and their contributions to the flavor changing processes estimated.

  4. Penguin-like diagrams from the standard model

    SciTech Connect

    Ping, Chia Swee

    2015-04-24

    The Standard Model is highly successful in describing the interactions of leptons and quarks. There are, however, rare processes that involve higher order effects in electroweak interactions. One specific class of processes is the penguin-like diagram. Such class of diagrams involves the neutral change of quark flavours accompanied by the emission of a gluon (gluon penguin), a photon (photon penguin), a gluon and a photon (gluon-photon penguin), a Z-boson (Z penguin), or a Higgs-boson (Higgs penguin). Such diagrams do not arise at the tree level in the Standard Model. They are, however, induced by one-loop effects. In this paper, we present an exact calculation of the penguin diagram vertices in the ‘tHooft-Feynman gauge. Renormalization of the vertex is effected by a prescription by Chia and Chong which gives an expression for the counter term identical to that obtained by employing Ward-Takahashi identity. The on-shell vertex functions for the penguin diagram vertices are obtained. The various penguin diagram vertex functions are related to one another via Ward-Takahashi identity. From these, a set of relations is obtained connecting the vertex form factors of various penguin diagrams. Explicit expressions for the gluon-photon penguin vertex form factors are obtained, and their contributions to the flavor changing processes estimated.

  5. JuFiT: A Configurable Rule Engine for Filtering and Generating New Multilingual Umls Terms

    PubMed Central

    Hellrich, Johannes; Schulz, Stefan; Buechel, Sven; Hahn, Udo

    2015-01-01

    We here describe JuFiT, an easily adjustable rule engine which allows to filter non-natural terms (i.e., ones usually not occurring in running citation texts) from the Umls metathesaurus and even adds new terms to the UMLS (by rewriting non-natural terms). Unlike previous attempts (with MetaMap or Casper), JuFiT serves multilingual purposes in that it runs for English, Spanish, French, German and Dutch documents, as well – the most prominent European languages in terms of UMLS coverage. We evaluated JuFiT under a variety of experimental conditions and found evidence that it increases annotation quality for English, and most likely also for German and Spanish. PMID:26958195

  6. Standardized Cardiovascular Quality Assurance Forms with Multilingual Support, UMLS Coding and Medical Concept Analyses.

    PubMed

    Varghese, Julian; Schulze Sünninghausen, Sarah; Dugas, Martin

    2015-01-01

    Standardized quality assurance (QA) plays an import role to maintain and develop success of cardiovascular procedures (CP). Well-established QA models from Germany could be shared in a form repository for world-wide reuse and exchange. Therefore, we collected the complete set of all quality QA forms for CP, which is obligatory to be filled out by all German health service providers. Original forms were converted into standardized study forms according to ODM (Operational Data Model) and translated into English. Common medical concepts and clusters of medical concepts were identified based on UMLS coding of form items. All forms are available on the web as multilingual ODM documents. UMLS concept coverage analysis indicates 88% coverage with few but critically important definition gaps, which need to be addressed by UMLS. PMID:26262169

  7. Argument Diagramming: The Araucaria Project

    NASA Astrophysics Data System (ADS)

    Rowe, Glenn; Reed, Chris

    Formal arguments, such as those used in science, medicine and law to establish a conclusion by providing supporting evidence, are frequently represented by diagrams such as trees and graphs. We describe the software package Araucaria which allows textual arguments to be marked up and represented as standard, Toulmin or Wigmore diagrams. Since each of these diagramming techniques was devised for a particular domain or argumentation, we discuss some of the issues involved in translating between diagrams. The exercise of translating between different diagramming types illustrates that any one diagramming system often cannot capture all of the nuances inherent in an argument. Finally, we describe some areas, such as critical thinking courses in colleges and universities and the analysis of evidence in court cases, where Araucaria has been put to practical use.

  8. Analyzing polysemous concepts from a clinical perspective: Application to auditing concept categorization in the UMLS

    PubMed Central

    Mougin, Fleur; Bodenreider, Olivier; Burgun, Anita

    2015-01-01

    Objectives Polysemy is a frequent issue in biomedical terminologies. In the Unified Medical Language System (UMLS), polysemous terms are either represented as several independent concepts, or clustered into a single, multiply-categorized concept. The objective of this study is to analyze polysemous concepts in the UMLS through their categorization and hierarchical relations for auditing purposes. Methods We used the association of a concept with multiple Semantic Groups (SGs) as a surrogate for polysemy. We first extracted multi-SG (MSG) concepts from the UMLS Metathesaurus and characterized them in terms of the combinations of SGs with which they are associated. We then clustered MSG concepts in order to identify major types of polysemy. We also analyzed the inheritance of SGs in MSG concepts. Finally, we manually reviewed the categorization of the MSG concepts for auditing purposes. Results The 1208 MSG concepts in the Metathesaurus are associated with 30 distinct pairs of SGs. We created 75 semantically homogeneous clusters of MSG concepts, and 276 MSG concepts could not be clustered for lack of hierarchical relations. The clusters were characterized by the most frequent pairs of semantic types of their constituent MSG concepts. MSG concepts exhibit limited semantic compatibility with their parent and child concepts. A large majority of MSG concepts (92%) are adequately categorized. Examples of miscategorized concepts are presented. Conclusion This work is a systematic analysis and manual review of all concepts categorized by multiple SGs in the UMLS. The correctly-categorized MSG concepts do reflect polysemy in the UMLS Metathesaurus. The analysis of inheritance of SGs proved useful for auditing concept categorization in the UMLS. PMID:19303057

  9. Arranging ISO 13606 archetypes into a knowledge base using UML connectors.

    PubMed

    Kopanitsa, Georgy

    2014-01-01

    To enable the efficient reuse of standard based medical data we propose to develop a higher-level information model that will complement the archetype model of ISO 13606. This model will make use of the relationships that are specified in UML to connect medical archetypes into a knowledge base within a repository. UML connectors were analysed for their ability to be applied in the implementation of a higher-level model that will establish relationships between archetypes. An information model was developed using XML Schema notation. The model allows linking different archetypes of one repository into a knowledge base. Presently it supports several relationships and will be advanced in future. PMID:24743069

  10. A Preliminary Evaluation of the UMLS Metathesaurus for Patient Record Classification

    PubMed Central

    Chute, C. G.; Tuttle, M. S.; Yang, Yiming; Sherertz, D. D.; Olson, N. E.; Erlbaum, M. S.

    1990-01-01

    The UMLS project seeks to provide a unified interface to biomedical knowledge resources. Patient medical records are an enormous repository of clinical intervention and outcome, and are drawing increasing attention in the pursuit of quality assurance, outcomes research, and epidemiologic analysis. We sought to evaluate an unedited version of the preliminary UMLS Metathesaurus, Meta-1, for the automated coding of medical diagnosis and surgical procedures. Identical evaluations were undertaken using SNOMED and the Mayo Clinic indexing lexicon. Meta-1 performed comparably to the comparison clinical indexing systems, although all systems exhibited problems associated with clinical attribute levels and modifier combinations.

  11. Potential-pH Diagrams.

    ERIC Educational Resources Information Center

    Barnum, Dennis W.

    1982-01-01

    Potential-pH diagrams show the domains of redoxpotential and pH in which major species are most stable. Constructing such diagrams provides students with opportunities to decide what species must be considered, search literature for equilibrium constants and free energies of formation, and practice in using the Nernst equation. (Author/JN)

  12. Contingency diagrams as teaching tools

    PubMed Central

    Mattaini, Mark A.

    1995-01-01

    Contingency diagrams are particularly effective teaching tools, because they provide a means for students to view the complexities of contingency networks present in natural and laboratory settings while displaying the elementary processes that constitute those networks. This paper sketches recent developments in this visualization technology and illustrates approaches for using contingency diagrams in teaching. ImagesFigure 2Figure 3Figure 4 PMID:22478208

  13. The cohesive metaschema: a higher-level abstraction of the UMLS Semantic Network.

    PubMed

    Perl, Yehoshua; Chen, Zong; Halper, Michael; Geller, James; Zhang, Li; Peng, Yi

    2002-06-01

    The Unified Medical Language System (UMLS) joins together a group of established medical terminologies in a unified knowledge representation framework. Two major resources of the UMLS are its Metathesaurus, containing a large number of concepts, and the Semantic Network (SN), containing semantic types and forming an abstraction of the Metathesaurus. However, the SN itself is large and complex and may still be difficult to view and comprehend. Our structural partitioning technique partitions the SN into structurally uniform sets of semantic types based on the distribution of the relationships within the SN. An enhancement of the structural partition results in cohesive, singly rooted sets of semantic types. Each such set is named after its root which represents the common nature of the group. These sets of semantic types are represented by higher-level components called metasemantic types. A network, called a metaschema, which consists of the meta-semantic types connected by hierarchical and semantic relationships is obtained and provides an abstract view supporting orientation to the SN. The metaschema is utilized to audit the UMLS classifications. We present a set of graphical views of the SN based on the metaschema to help in user orientation to the SN. A study compares the cohesive metaschema to metaschemas derived semantically by UMLS experts. PMID:12669983

  14. "UML Quiz": Automatic Conversion of Web-Based E-Learning Content in Mobile Applications

    ERIC Educational Resources Information Center

    von Franqué, Alexander; Tellioglu, Hilda

    2014-01-01

    Many educational institutions use Learning Management Systems to provide e-learning content to their students. This often includes quizzes that can help students to prepare for exams. However, the content is usually web-optimized and not very usable on mobile devices. In this work a native mobile application ("UML Quiz") that imports…

  15. English Pyramids: Using Hierarchical Diagrams for Communication Activities.

    ERIC Educational Resources Information Center

    Johnson, Tia; Sheetz-Brunetti, Judy

    The pyramid, or hierarchical diagram, is used in teaching writing English as a second language (ESL) as a visual representation of the way English speakers and writers organize ideas, for comparison with discourse organization in other cultures. A common problem of ESL students is an inability to organize ideas hierarchically. One class activity…

  16. The Hertzsprung-Russell Diagram.

    ERIC Educational Resources Information Center

    Woodrow, Janice

    1991-01-01

    Describes a classroom use of the Hertzsprung-Russell diagram to infer not only the properties of a star but also the star's probable stage in evolution, life span, and age of the cluster in which it is located. (ZWH)

  17. Atemporal diagrams for quantum circuits

    SciTech Connect

    Griffiths, Robert B.; Wu Shengjun; Yu Li; Cohen, Scott M.

    2006-05-15

    A system of diagrams is introduced that allows the representation of various elements of a quantum circuit, including measurements, in a form which makes no reference to time (hence 'atemporal'). It can be used to relate quantum dynamical properties to those of entangled states (map-state duality), and suggests useful analogies, such as the inverse of an entangled ket. Diagrams clarify the role of channel kets, transition operators, dynamical operators (matrices), and Kraus rank for noisy quantum channels. Positive (semidefinite) operators are represented by diagrams with a symmetry that aids in understanding their connection with completely positive maps. The diagrams are used to analyze standard teleportation and dense coding, and for a careful study of unambiguous (conclusive) teleportation. A simple diagrammatic argument shows that a Kraus rank of 3 is impossible for a one-qubit channel modeled using a one-qubit environment in a mixed state.

  18. Particles, Feynman Diagrams and All That

    ERIC Educational Resources Information Center

    Daniel, Michael

    2006-01-01

    Quantum fields are introduced in order to give students an accurate qualitative understanding of the origin of Feynman diagrams as representations of particle interactions. Elementary diagrams are combined to produce diagrams representing the main features of the Standard Model.

  19. Teaching Tip: Using Activity Diagrams to Model Systems Analysis Techniques: Teaching What We Preach

    ERIC Educational Resources Information Center

    Lending, Diane; May, Jeffrey

    2013-01-01

    Activity diagrams are used in Systems Analysis and Design classes as a visual tool to model the business processes of "as-is" and "to-be" systems. This paper presents the idea of using these same activity diagrams in the classroom to model the actual processes (practices and techniques) of Systems Analysis and Design. This tip…

  20. CHARTLINE: providing bibliographic references relevant to patient charts using the UMLS Metathesaurus Knowledge Sources.

    PubMed Central

    Miller, R. A.; Gieszczykiewicz, F. M.; Vries, J. K.; Cooper, G. F.

    1992-01-01

    A successful medical informatics program helps its users to match their information needs as closely and efficiently as possible to the capabilities of the system. CHARTLINE is a computer program whose input is a free text, "natural language" patient chart in ASCII format. Using the UMLS Metathesaurus Knowledge Sources, CHARTLINE can suggest bibliographic references relevant to the patient case described in the chart. The program does not attempt to "understand" the natural language content of the chart. CHARTLINE only recognizes UMLS Metathesaurus Main Concept terms (or their synonyms) as they occur in the medical text, since those terms represent the tokens used to index the literature. The program depends on user feedback to determine which topics of a large number of potentially relevant subjects are of interest to the user. PMID:1483014

  1. A semantic normal form for clinical drugs in the UMLS: early experiences with the VANDF.

    PubMed Central

    Nelson, Stuart J.; Brown, Steven H.; Erlbaum, Mark S.; Olson, Nels; Powell, Tammy; Carlsen, Brian; Carter, John; Tuttle, Mark S.; Hole, William T.

    2002-01-01

    A semantic normal form (SNF) for a clinical drug, designed to represent the meaning of an expression typically seen in a practitioner's medication order, has been developed and is being created in the UMLS Metathesaurus. The long term goal is to establish a relationship for every concept in the Metathesaurus with semantic type "clinical drug" with one or more of these semantic normal forms. First steps have been taken using the Veterans Administration National Drug File (VANDF). 70% of the entries in the VANDF could be parsed algorithmically into the SNF. Next steps include parsing other drug vocabularies included in the UMLS Metathesaurus and performing human review of the parsed vocabularies. After machine parsed forms have been merged in the Metathesaurus Information Database (MID), editors will be able to edit matched SNFs for accuracy and establish relationships and relationship attributes with other clinical drug concepts PMID:12463886

  2. Structural Group-based Auditing of Missing Hierarchical Relationships in UMLS

    PubMed Central

    Chen, Yan; Gu, Huanying(Helen); Perl, Yehoshua; Geller, James

    2009-01-01

    The Metathesaurus of the UMLS was created by integrating various source terminologies. The inter-concept relationships were either integrated into the UMLS from the source terminologies or specially generated. Due to the extensive size and inherent complexity of the Metathesaurus, the accidental omission of some hierarchical relationships was inevitable. We present a recursive procedure which allows a human expert, with the support of an algorithm, to locate missing hierarchical relationships. The procedure starts with a group of concepts with exactly the same (correct) semantic type assignments. It then partitions the concepts, based on child-of hierarchical relationships, into smaller, singly rooted, hierarchically connected subgroups. The auditor only needs to focus on the subgroups with very few concepts and their concepts with semantic type reassignments. The procedure was evaluated by comparing it with a comprehensive manual audit and it exhibits a perfect error recall. PMID:18824248

  3. Standardized quality assurance forms for organ transplantations with multilingual support, open access and UMLS coding.

    PubMed

    Varghese, Julian; Sünninghausen, Sarah Schulze; Dugas, Martin

    2015-01-01

    Quality assurance (QA) is a key factor to evaluate success of organ transplantations. In Germany QA documentation is progressively developed and enforced by law. Our objective is to share QA models from Germany in a standardized format within a form repository for world-wide reuse and exchange. Original QA forms were converted into standardized study forms according to the Operational Data Model (ODM) and shared for open access in an international forms repository. Form elements were translated into English and semantically enriched with Concept Unique Identifiers from the Unified Medical Language System (UMLS) based on medical expert decision. All forms are available on the web as multilingual ODM documents. UMLS concept coverage analysis indicates 92% coverage with few but critically important definition gaps. New content and infrastructure for harmonized documentation forms is provided in the domain of organ transplantations enabling world-wide reuse and exchange. PMID:26063252

  4. Using WordNet to improve the mapping of data elements to UMLS for data sources integration.

    PubMed

    Mougin, Fleur; Burgun, Anita; Bodenreider, Olivier

    2006-01-01

    Each biomedical system has its own way of naming the pieces of information it contains, i.e., of defining its data elements (DEs). Integrating DEs facilitates the integration of biomedical resources. However, the mapping of DEs to the UMLS is ambiguous in many cases, when any correspondence is found at all. We propose to evaluate the potential contribution of a more general terminology: WordNet. Our method is based on synonyms, definitions, and structural properties of the terminologies. We applied it to a set of 474 DEs extracted from eleven biomedical sources. We show that WordNet can improve the direct mapping of DEs to UMLS when used to validate and disambiguate UMLS direct mappings. WordNet can also help identify indirect mappings of DEs to the UMLS. PMID:17238406

  5. Relating UMLS semantic types and task-based ontology to computer-interpretable clinical practice guidelines.

    PubMed

    Kumar, Anand; Ciccarese, Paolo; Quaglini, Silvana; Stefanelli, Mario; Caffi, Ezio; Boiocchi, Lorenzo

    2003-01-01

    Medical knowledge in clinical practice guideline (GL) texts is the source of task-based computer-interpretable clinical guideline models (CIGMs). We have used Unified Medical Language System (UMLS) semantic types (STs) to understand the percentage of GL text which belongs to a particular ST. We also use UMLS semantic network together with the CIGM-specific ontology to derive a semantic meaning behind the GL text. In order to achieve this objective, we took nine GL texts from the National Guideline Clearinghouse (NGC) and marked up the text dealing with a particular ST. The STs we took into consideration were restricted taking into account the requirements of a task-based CIGM. We used DARPA Agent Markup Language and Ontology Inference Layer (DAML + OIL) to create the UMLS and CIGM specific semantic network. For the latter, as a bench test, we used the 1999 WHO-International Society of Hypertension Guidelines for the Management of Hypertension. We took into consideration the UMLS STs closest to the clinical tasks. The percentage of the GL text dealing with the ST "Health Care Activity" and subtypes "Laboratory Procedure", "Diagnostic Procedure" and "Therapeutic or Preventive Procedure" were measured. The parts of text belonging to other STs or comments were separated. A mapping of terms belonging to other STs was done to the STs under "HCA" for representation in DAML + OIL. As a result, we found that the three STs under "HCA" were the predominant STs present in the GL text. In cases where the terms of related STs existed, they were mapped into one of the three STs. The DAML + OIL representation was able to describe the hierarchy in task-based CIGMs. To conclude, we understood that the three STs could be used to represent the semantic network of the task-bases CIGMs. We identified some mapping operators which could be used for the mapping of other STs into these. PMID:14664031

  6. Resolution of Redundant Semantic Type Assignments for Organic Chemicals in the UMLS

    PubMed Central

    Morrey, C. Paul; Chen, Ling; Halper, Michael; Perl, Yehoshua

    2011-01-01

    Objective The Unified Medical Language System (UMLS) integrates terms from different sources into concepts and supplements these with the assignment of one or more high-level semantic types (STs) from its Semantic Network (SN). For a composite organic chemical concept, multiple assignments of organic chemical STs often serve to enumerate the types of the composite’s underlying chemical constituents. This practice sometimes leads to the introduction of a forbidden redundant ST assignment, where both an ST and one of its descendants are assigned to the same concept. A methodology for resolving redundant ST assignments for organic chemicals, better capturing the essence of such composite chemicals than the typical omission of the more general ST, is presented. Methods and Material The typical SN resolution of a redundant ST assignment is to retain only the more specific ST assignment and omit the more general one. However, with organic chemicals, that is not always the correct strategy. A methodology for properly dealing with the redundancy based on the relative sizes of the chemical components is presented. It is more accurate to use the ST of the larger chemical component for capturing the category of the concept, even if that means using the more general ST. Results A sample of 254 chemical concepts having redundant ST assignments in older UMLS releases was audited to analyze the accuracy of current ST assignments. For 81 (32%) of them, our chemical analysis-based approach yielded a different recommendation from the UMLS (2009AA). New UMLS usage notes capturing rules of this methodology are proffered. Conclusions Redundant ST assignments have typically arisen for organic composite chemical concepts. A methodology for dealing with this kind of erroneous configuration, capturing the proper category for a composite chemical, is presented and demonstrated. PMID:21646001

  7. Validation of clinical problems using a UMLS-based semantic parser.

    PubMed

    Goldberg, H S; Hsu, C; Law, V; Safran, C

    1998-01-01

    The capture and symbolization of data from the clinical problem list facilitates the creation of high-fidelity patient resumes for use in aggregate analysis and decision support. We report on the development of a UMLS-based semantic parser and present a preliminary evaluation of the parser in the recognition and validation of disease-related clinical problems. We randomly sampled 20% of the 26,858 unique non-dictionary clinical problems entered into OMR (Online Medical Record) between 1989 and August, 1997, and eliminated a series of qualified problem labels, e.g., history-of, to obtain a dataset of 4122 problem labels. Within this dataset, the authors identified 2810 labels (68.2%) as referring to a broad range of disease-related processes. The parser correctly recognized and validated 1398 of the 2810 disease-related labels (49.8 +/- 1.9%) and correctly excluded 1220 of 1312 non-disease-related labels (93.0 +/- 1.4%). 812 of the 1181 match failures (68.8%) were caused by terms either absent from UMLS or modifiers not accepted by the parser; 369 match failures (31.2%) were caused by labels having patterns not recognized by the parser. By enriching the UMLS lexicon with terms commonly found in provider-entered labels, it appears that performance of the parser can be significantly enhanced over a few subsequent iterations. This initial evaluation provides a foundation from which to make principled additions to the UMLS lexicon locally for use in symbolizing clinical data; further research is necessary to determine applicability to other health care settings. PMID:9929330

  8. Statistical Techniques Complement UML When Developing Domain Models of Complex Dynamical Biosystems

    PubMed Central

    Timmis, Jon; Qwarnstrom, Eva E.

    2016-01-01

    Computational modelling and simulation is increasingly being used to complement traditional wet-lab techniques when investigating the mechanistic behaviours of complex biological systems. In order to ensure computational models are fit for purpose, it is essential that the abstracted view of biology captured in the computational model, is clearly and unambiguously defined within a conceptual model of the biological domain (a domain model), that acts to accurately represent the biological system and to document the functional requirements for the resultant computational model. We present a domain model of the IL-1 stimulated NF-κB signalling pathway, which unambiguously defines the spatial, temporal and stochastic requirements for our future computational model. Through the development of this model, we observe that, in isolation, UML is not sufficient for the purpose of creating a domain model, and that a number of descriptive and multivariate statistical techniques provide complementary perspectives, in particular when modelling the heterogeneity of dynamics at the single-cell level. We believe this approach of using UML to define the structure and interactions within a complex system, along with statistics to define the stochastic and dynamic nature of complex systems, is crucial for ensuring that conceptual models of complex dynamical biosystems, which are developed using UML, are fit for purpose, and unambiguously define the functional requirements for the resultant computational model. PMID:27571414

  9. Statistical Techniques Complement UML When Developing Domain Models of Complex Dynamical Biosystems.

    PubMed

    Williams, Richard A; Timmis, Jon; Qwarnstrom, Eva E

    2016-01-01

    Computational modelling and simulation is increasingly being used to complement traditional wet-lab techniques when investigating the mechanistic behaviours of complex biological systems. In order to ensure computational models are fit for purpose, it is essential that the abstracted view of biology captured in the computational model, is clearly and unambiguously defined within a conceptual model of the biological domain (a domain model), that acts to accurately represent the biological system and to document the functional requirements for the resultant computational model. We present a domain model of the IL-1 stimulated NF-κB signalling pathway, which unambiguously defines the spatial, temporal and stochastic requirements for our future computational model. Through the development of this model, we observe that, in isolation, UML is not sufficient for the purpose of creating a domain model, and that a number of descriptive and multivariate statistical techniques provide complementary perspectives, in particular when modelling the heterogeneity of dynamics at the single-cell level. We believe this approach of using UML to define the structure and interactions within a complex system, along with statistics to define the stochastic and dynamic nature of complex systems, is crucial for ensuring that conceptual models of complex dynamical biosystems, which are developed using UML, are fit for purpose, and unambiguously define the functional requirements for the resultant computational model. PMID:27571414

  10. UMLS as Knowledge Base-A Rule-Based Expert System Approach to Controlled Medical Vocabulary Management

    PubMed Central

    Cimino, James J.; Hripcsak, George; Johnson, Stephen B.; Friedman, Carol; Fink, Daniel J.; Clayton, Paul D.

    1990-01-01

    The National Library of Medicine is developing a Unified Medical Language System (UMLS) which addresses the need for integration of several large, nationally accepted vocabularies. This is important to the clinical information system under development at the Columbia-Presbyterian Medical Center (CPMC). We are using UMLS components as the core of our effort to integrate existing local CPMC vocabularies which are not among the source vocabularies of the UMLS. We are also using the UMLS to build a knowledge base of vocabulary structure and content such that logical rules can be developed to assist in the management of our integrated vocabularies. At present, the UMLS Semantic Network is used to organize terms which describe laboratory procedures. We have developed a set of rules for identifying undesirable conditions in our vocabulary. We have applied these rules to 526 laboratory test terms and have found ten cases (2%) of definite redundancy and sixty-eight cases (13%) of potential redundancy. The rules have also been used to organize the terminology in new ways that facilitate its management. Using the UMLS model as a vocabulary knowledge base allows us to apply an expert system approach to vocabulary integration and management.

  11. Automatically Assessing Graph-Based Diagrams

    ERIC Educational Resources Information Center

    Thomas, Pete; Smith, Neil; Waugh, Kevin

    2008-01-01

    To date there has been very little work on the machine understanding of imprecise diagrams, such as diagrams drawn by students in response to assessment questions. Imprecise diagrams exhibit faults such as missing, extraneous and incorrectly formed elements. The semantics of imprecise diagrams are difficult to determine. While there have been…

  12. Pseudohaptic interaction with knot diagrams

    NASA Astrophysics Data System (ADS)

    Weng, Jianguang; Zhang, Hui

    2012-07-01

    To make progress in understanding knot theory, we need to interact with the projected representations of mathematical knots, which are continuous in three dimensions (3-D) but significantly interrupted in the projective images. One way to achieve such a goal is to design an interactive system that allows us to sketch two-dimensional (2-D) knot diagrams by taking advantage of a collision-sensing controller and explore their underlying smooth structures through a continuous motion. Recent advances of interaction techniques have been made that allow progress in this direction. Pseudohaptics that simulate haptic effects using pure visual feedback can be used to develop such an interactive system. We outline one such pseudohaptic knot diagram interface. Our interface derives from the familiar pencil-and-paper process of drawing 2-D knot diagrams and provides haptic-like sensations to facilitate the creation and exploration of knot diagrams. A centerpiece of the interaction model simulates a physically reactive mouse cursor, which is exploited to resolve the apparent conflict between the continuous structure of the actual smooth knot and the visual discontinuities in the knot diagram representation. Another value in exploiting pseudohaptics is that an acceleration (or deceleration) of the mouse cursor (or surface locator) can be used to indicate the slope of the curve (or surface) of which the projective image is being explored. By exploiting these additional visual cues, we proceed to a full-featured extension to a pseudohaptic four-dimensional (4-D) visualization system that simulates the continuous navigation on 4-D objects and allows us to sense the bumps and holes in the fourth dimension. Preliminary tests of the software show that main features of the interface overcome some expected perceptual limitations in our interaction with 2-D knot diagrams of 3-D knots and 3-D projective images of 4-D mathematical objects.

  13. Fast Formal Analysis of Requirements via "Topoi Diagrams"

    NASA Technical Reports Server (NTRS)

    Menzies, Tim; Powell, John; Houle, Michael E.; Kelly, John C. (Technical Monitor)

    2001-01-01

    Early testing of requirements can decrease the cost of removing errors in software projects. However, unless done carefully, that testing process can significantly add to the cost of requirements analysis. We show here that requirements expressed as topoi diagrams can be built and tested cheaply using our SP2 algorithm, the formal temporal properties of a large class of topoi can be proven very quickly, in time nearly linear in the number of nodes and edges in the diagram. There are two limitations to our approach. Firstly, topoi diagrams cannot express certain complex concepts such as iteration and sub-routine calls. Hence, our approach is more useful for requirements engineering than for traditional model checking domains. Secondly, out approach is better for exploring the temporal occurrence of properties than the temporal ordering of properties. Within these restrictions, we can express a useful range of concepts currently seen in requirements engineering, and a wide range of interesting temporal properties.

  14. Voronoi Diagrams and Spring Rain

    ERIC Educational Resources Information Center

    Perham, Arnold E.; Perham, Faustine L.

    2011-01-01

    The goal of this geometry project is to use Voronoi diagrams, a powerful modeling tool across disciplines, and the integration of technology to analyze spring rainfall from rain gauge data over a region. In their investigation, students use familiar equipment from their mathematical toolbox: triangles and other polygons, circumcenters and…

  15. Electronegativity and hardness as coordinates in structure stability diagrams.

    PubMed Central

    Shankar, S; Parr, R G

    1985-01-01

    With electronegativity and hardness of an atom defined as 1/2(I + A) and 1/2(I - A), respectively, where I and A are the ionization potential and electron affinity, electronegativity difference and hardness sum are proposed as coordinates in structure stability diagrams. With these coordinates a successful topological classification of the crystal structures of octet and suboctet binary compounds is obtained, and a clear delineation of the structural classes portraying chemical periodicity is found. PMID:3855552

  16. Spectral Determinants on Mandelstam Diagrams

    NASA Astrophysics Data System (ADS)

    Hillairet, Luc; Kalvin, Victor; Kokotov, Alexey

    2016-04-01

    We study the regularized determinant of the Laplacian as a functional on the space of Mandelstam diagrams (noncompact translation surfaces glued from finite and semi-infinite cylinders). A Mandelstam diagram can be considered as a compact Riemann surface equipped with a conformal flat singular metric {|ω|^2}, where {ω} is a meromorphic one-form with simple poles such that all its periods are pure imaginary and all its residues are real. The main result is an explicit formula for the determinant of the Laplacian in terms of the basic objects on the underlying Riemann surface (the prime form, theta-functions, the canonical meromorphic bidifferential) and the divisor of the meromorphic form {ω}. As an important intermediate result we prove a decomposition formula of the type of Burghelea-Friedlander-Kappeler for the determinant of the Laplacian for flat surfaces with cylindrical ends and conical singularities.

  17. Hero's journey in bifurcation diagram

    NASA Astrophysics Data System (ADS)

    Monteiro, L. H. A.; Mustaro, P. N.

    2012-06-01

    The hero's journey is a narrative structure identified by several authors in comparative studies on folklore and mythology. This storytelling template presents the stages of inner metamorphosis undergone by the protagonist after being called to an adventure. In a simplified version, this journey is divided into three acts separated by two crucial moments. Here we propose a discrete-time dynamical system for representing the protagonist's evolution. The suffering along the journey is taken as the control parameter of this system. The bifurcation diagram exhibits stationary, periodic and chaotic behaviors. In this diagram, there are transition from fixed point to chaos and transition from limit cycle to fixed point. We found that the values of the control parameter corresponding to these two transitions are in quantitative agreement with the two critical moments of the three-act hero's journey identified in 10 movies appearing in the list of the 200 worldwide highest-grossing films.

  18. Exploiting the UMLS Metathesaurus for extracting and categorizing concepts representing signs and symptoms to anatomically related organ systems

    PubMed Central

    Tran, Le-Thuy T.; Divita, Guy; Carter, Marjorie E.; Judd, Joshua; Samore, Matthew H.; Gundlapalli, Adi V.

    2016-01-01

    Objective To develop a method to exploit the UMLS Metathesaurus for extracting and categorizing concepts found in clinical text representing signs and symptoms to anatomically related organ systems. The overarching goal is to classify patient reported symptoms to organ systems for population health and epidemiological analyses. Materials and methods Using the concepts’ semantic types and the inter-concept relationships as guidance, a selective portion of the concepts within the UMLS Metathesaurus was traversed starting from the concepts representing the highest level organ systems. The traversed concepts were chosen, filtered, and reviewed to obtain the concepts representing clinical signs and symptoms by blocking deviations, pruning superfluous concepts, and manual review. The mapping process was applied to signs and symptoms annotated in a corpus of 750 clinical notes. Results The mapping process yielded a total of 91,000 UMLS concepts (with approximately 300,000 descriptions) possibly representing physical and mental signs and symptoms that were extracted and categorized to the anatomically related organ systems. Of 1864 distinct descriptions of signs and symptoms found in the 750 document corpus, 1635 of these (88%) were successfully mapped to the set of concepts extracted from the UMLS. Of 668 unique concepts mapped, 603 (90%) were correctly categorized to their organ systems. Conclusion We present a process that facilitates mapping of signs and symptoms to their organ systems. By providing a smaller set of UMLS concepts to use for comparing and matching patient records, this method has the potential to increase efficiency of information extraction pipelines. PMID:26362345

  19. A UMLS-based spell checker for natural language processing in vaccine safety

    PubMed Central

    Tolentino, Herman D; Matters, Michael D; Walop, Wikke; Law, Barbara; Tong, Wesley; Liu, Fang; Fontelo, Paul; Kohl, Katrin; Payne, Daniel C

    2007-01-01

    Background The Institute of Medicine has identified patient safety as a key goal for health care in the United States. Detecting vaccine adverse events is an important public health activity that contributes to patient safety. Reports about adverse events following immunization (AEFI) from surveillance systems contain free-text components that can be analyzed using natural language processing. To extract Unified Medical Language System (UMLS) concepts from free text and classify AEFI reports based on concepts they contain, we first needed to clean the text by expanding abbreviations and shortcuts and correcting spelling errors. Our objective in this paper was to create a UMLS-based spelling error correction tool as a first step in the natural language processing (NLP) pipeline for AEFI reports. Methods We developed spell checking algorithms using open source tools. We used de-identified AEFI surveillance reports to create free-text data sets for analysis. After expansion of abbreviated clinical terms and shortcuts, we performed spelling correction in four steps: (1) error detection, (2) word list generation, (3) word list disambiguation and (4) error correction. We then measured the performance of the resulting spell checker by comparing it to manual correction. Results We used 12,056 words to train the spell checker and tested its performance on 8,131 words. During testing, sensitivity, specificity, and positive predictive value (PPV) for the spell checker were 74% (95% CI: 74–75), 100% (95% CI: 100–100), and 47% (95% CI: 46%–48%), respectively. Conclusion We created a prototype spell checker that can be used to process AEFI reports. We used the UMLS Specialist Lexicon as the primary source of dictionary terms and the WordNet lexicon as a secondary source. We used the UMLS as a domain-specific source of dictionary terms to compare potentially misspelled words in the corpus. The prototype sensitivity was comparable to currently available tools, but the

  20. Structuration and acquisition of medical knowledge. Using UMLS in the conceptual graph formalism.

    PubMed Central

    Volot, F.; Zweigenbaum, P.; Bachimont, B.; Ben Said, M.; Bouaud, J.; Fieschi, M.; Boisvieux, J. F.

    1993-01-01

    The use of a taxonomy, such as the concept type lattice (CTL) of Conceptual Graphs, is a central structuring piece in a knowledge-based system. The knowledge it contains is constantly used by the system, and its structure provides a guide for the acquisition of other pieces of knowledge. We show how UMLS can be used as a knowledge resource to build a CTL and how the CTL can help the process of acquisition for other kinds of knowledge. We illustrate this method in the context of the MENELAS natural language understanding project. PMID:8130568

  1. Causal diagrams in systems epidemiology

    PubMed Central

    2012-01-01

    Methods of diagrammatic modelling have been greatly developed in the past two decades. Outside the context of infectious diseases, systematic use of diagrams in epidemiology has been mainly confined to the analysis of a single link: that between a disease outcome and its proximal determinant(s). Transmitted causes ("causes of causes") tend not to be systematically analysed. The infectious disease epidemiology modelling tradition models the human population in its environment, typically with the exposure-health relationship and the determinants of exposure being considered at individual and group/ecological levels, respectively. Some properties of the resulting systems are quite general, and are seen in unrelated contexts such as biochemical pathways. Confining analysis to a single link misses the opportunity to discover such properties. The structure of a causal diagram is derived from knowledge about how the world works, as well as from statistical evidence. A single diagram can be used to characterise a whole research area, not just a single analysis - although this depends on the degree of consistency of the causal relationships between different populations - and can therefore be used to integrate multiple datasets. Additional advantages of system-wide models include: the use of instrumental variables - now emerging as an important technique in epidemiology in the context of mendelian randomisation, but under-used in the exploitation of "natural experiments"; the explicit use of change models, which have advantages with respect to inferring causation; and in the detection and elucidation of feedback. PMID:22429606

  2. Looking inside the butterfly diagram

    NASA Astrophysics Data System (ADS)

    Ternullo, M.

    2007-12-01

    The suitability of Maunder's butterfly diagram to give a realistic picture of the photospheric magnetic flux large scale distribution is discussed. The evolution of the sunspot zone in cycle 20 through 23 is described. To reduce the noise which covers any structure in the diagram, a smoothing algorithm has been applied to the sunspot data. This operation has eliminated any short period fluctuation, and given visibility to long duration phenomena. One of these phenomena is the fact that the equatorward drift of the spot zone center of mass results from the alternation of several prograde (namely, equatorward) segments with other stationary or poleward segments. The long duration of the stationary/retrograde phases as well as the similarities among the spot zone alternating paths in the cycles under examination prevent us from considering these features as meaningless fluctuations, randomly superimposed on the continuous equatorward migration. On the contrary, these features should be considered physically meaningful phenomena, requiring adequate explanations. Moreover, even the smoothed spotted area markedly oscillates. The compared examination of area and spot zone evolution allows us to infer details about the spotted area distribution inside the butterfly diagram. Links between the changing structure of the spot zone and the tachocline rotation rate oscillations are proposed.

  3. Twistor Diagrams and Quantum Field Theory.

    NASA Astrophysics Data System (ADS)

    O'Donald, Lewis

    Available from UMI in association with The British Library. Requires signed TDF. This thesis uses twistor diagram theory, as developed by Penrose (1975) and Hodges (1990c), to try to approach some of the difficulties inherent in the standard quantum field theoretic description of particle interactions. The resolution of these issues is the eventual goal of the twistor diagram program. First twistor diagram theory is introduced from a physical view-point, with the aim of studying larger diagrams than have been typically explored. Methods are evolved to tackle the double box and triple box diagrams. These lead to three methods of constructing an amplitude for the double box, and two ways for the triple box. Next this theory is applied to translate the channels of a Yukawa Feynman diagram, which has more than four external states, into various twistor diagrams. This provides a test of the skeleton hypothesis (of Hodges, 1990c) in these cases, and also shows that conformal breaking must enter into twistor diagrams before the translation of loop level Feynman diagrams. The issue of divergent Feynman diagrams is then considered. By using a twistor equivalent of the sum-over -states idea of quantum field theory, twistor translations of loop diagrams are conjectured. The various massless propagator corrections and vacuum diagrams calculated give results consistent with Feynman theory. Two diagrams are also found that give agreement with the finite parts of the Feynman "fish" diagrams of phi^4 -theory. However it is found that a more rigorous translation for the time-like fish requires new boundaries to be added to the twistor sum-over-states. The twistor diagram obtained is found to give the finite part of the relevant Feynman diagram.

  4. Differential Effectiveness of Two Science Diagram Types.

    ERIC Educational Resources Information Center

    Holliday, William G.

    Reported is an Aptitude Treatment Instruction (ATI) Study designed to evaluate the aptitude of verbal comprehension in terms of two unitary complex science diagram types: a single complex block word diagram and a single complex picture word diagram.. ATI theory and research indicate that different effective instructional treatments tend to help…

  5. Arrows in Comprehending and Producing Mechanical Diagrams

    ERIC Educational Resources Information Center

    Heiser, Julie; Tversky, Barbara

    2006-01-01

    Mechanical systems have structural organizations--parts, and their relations--and functional organizations--temporal, dynamic, and causal processes--which can be explained using text or diagrams. Two experiments illustrate the role of arrows in diagrams of mechanical systems. In Experiment 1, people described diagrams with or without arrows,…

  6. Colaborated Architechture Framework for Composition UML 2.0 in Zachman Framework

    NASA Astrophysics Data System (ADS)

    Hermawan; Hastarista, Fika

    2016-01-01

    Zachman Framework (ZF) is the framework of enterprise architechture that most widely adopted in the Enterprise Information System (EIS) development. In this study, has been developed Colaborated Architechture Framework (CAF) to collaborate ZF with Unified Modeling Language (UML) 2.0 modeling. The CAF provides the composition of ZF matrix that each cell is consist of the Model Driven architechture (MDA) from the various UML models and many Software Requirement Specification (SRS) documents. Implementation of this modeling is used to develops Enterprise Resource Planning (ERP). Because ERP have a coverage of applications in large numbers and complexly relations, it is necessary to use Agile Model Driven Design (AMDD) approach as an advanced method to transforms MDA into components of application modules with efficiently and accurately. Finally, through the using of the CAF, give good achievement in fullfilment the needs from all stakeholders that are involved in the overall process stage of Rational Unified Process (RUP), and also obtaining a high satisfaction to fullfiled the functionality features of the ERP software in PT. Iglas (Persero) Gresik.

  7. A Semantic-based Approach for Exploring Consumer Health Questions Using UMLS

    PubMed Central

    Cui, Licong; Tao, Shiqiang; Zhang, Guo-Qiang

    2014-01-01

    NetWellness is a non-profit web service providing high quality health information. It has been in operation since 1995 with over 13 million visits per year by consumers across the world in recent years. Consumer questions in NetWellness have been answered by medical and health professional faculties at three Ohio partner universities: Case Western Reserve University, the Ohio State University, and University of Cincinnati. However, the resident interface in NetWellness is ineffective in searching existing questions that have already been carefully answered by experts in an easy-to-understand manner. In our previous work, we presented a Conjunctive Exploratory Navigation Interface (CENI) reusing NetWellness’ 120 pre-defined health topics in assisting question retrieval. This paper presents a novel semantic-based search interface called Semantic Conjunctive Exploratory Navigation Interface (SCENI), using UMLS concepts as topics. 60,000 questions were tagged by UMLS Concept Unique Identifies (CUIs), with each question allowing multiple possible tags. Using a slightly modified 5-point Likert scale for relevance, SCENI reveals improved precision and relevance (precision: 93.47%, relevance: 4.31) in comparison to CENI using NetWellness’ pre-defined topics alone (precision: 77.85%, relevance: 3.3) and NetWellness’ resident search interface (precision: 50.62%, relevance: 1.97), on a set of sample queries. PMID:25954347

  8. The architecture of the CMS Level-1 Trigger Control and Monitoring System using UML

    NASA Astrophysics Data System (ADS)

    Magrans de Abril, Marc; Da Rocha Melo, Jose L.; Ghabrous Larrea, Carlos; Hammer, Josef; Hartl, Christian; Lazaridis, Christos

    2011-12-01

    The architecture of the Compact Muon Solenoid (CMS) Level-1 Trigger Control and Monitoring software system is presented. This system has been installed and commissioned on the trigger online computers and is currently used for data taking. It has been designed to handle the trigger configuration and monitoring during data taking as well as all communications with the main run control of CMS. Furthermore its design has foreseen the provision of the software infrastructure for detailed testing of the trigger system during beam down time. This is a medium-size distributed system that runs over 40 PCs and 200 processes that control about 4000 electronic boards. The architecture of this system is described using the industry-standard Universal Modeling Language (UML). This way the relationships between the different subcomponents of the system become clear and all software upgrades and modifications are simplified. The described architecture has allowed for frequent upgrades that were necessary during the commissioning phase of CMS when the trigger system evolved constantly. As a secondary objective, the paper provides a UML usage example and tries to encourage the standardization of the software documentation of large projects across the LHC and High Energy Physics community.

  9. Understanding machines from text and diagrams

    NASA Astrophysics Data System (ADS)

    Hegarty, Mary; Just, Marcel A.

    1987-12-01

    Instructional materials typically use both text and diagrams to explain how machines work. In this paper we give an account of what information is involved in understanding a mechanical device and the role that diagrams might play in communicating this information. We propose a model of how people read a text and inspect an accompanying diagram which states that people inspect diagrams for three reasons: (1) to form a representation of information read in the text, (2) to reactivate information that has already been represented, and (3) to encode information that is absent from the text. Using data from subjects' eye fixations while they read a text and inspected an accompanying diagram, we find that low-ability subjects need to inspect diagrams more often than high-ability text. The data also suggest that knowledge of what is relevant in a diagram might be a prerequisite for encoding new information from a diagram. Instructional materials typically use both text and diagrams to explain how machines work. In this paper we give an account of what information is involved in understanding a mechanical device and the role that diagrams might play in communicating this information. We propose a model of how people read a text and inspect an accompanying diagram which states that people inspect diagrams for three reasons: (1) to form a representation of information read in the text; (2) to reactivate information that was alsready represented, and *3) to encode information that is absent from the text. Uinsg data from subjects' eye fixations while they read a text and inspected an accompanying diagram, we find that low-ability subjects need to inspect diagrmas more often than high-ability tesxt. The data also suggest that knowledge of what is relevant in a diagram might be a prerequisite and encoding information on a diagram.

  10. Optical generation of Voronoi diagram.

    PubMed

    Giavazzi, F; Cerbino, R; Mazzoni, S; Giglio, M; Vailati, A

    2008-03-31

    We present results of experiments of diffraction by an amplitude screen, made of randomly distributed circular holes. By careful selection of the experimental parameters we obtain an intensity pattern strongly connected to the Voronoi diagram (VD) generated by the centers of the apertures. With the help of simulations we give a description of the observed phenomenon and elucidate the optimal parameters for its observation. Finally, we also suggest how it can be used for a fast, all-optical generation of VDs. PMID:18542580

  11. A Hubble Diagram for Quasars

    NASA Astrophysics Data System (ADS)

    Risaliti, Guido; Lusso, Elisabeta

    2015-09-01

    We present a new method to test the cosmological model at high z, and measure the cosmological parameters, based on the non-linear correlation between UV and X-ray luminosity in quasars. While the method can be successfully tested with the data available today, a deep X-ray survey matching the future LSST and Euclid quasar catalogs is needed to achieve a high precision. Athena could provide a Hubble diagram for quasar analogous to that available today for supernovae, but extending up to z>6.

  12. What Kinds of Perceptions and Daily Learning Behaviors Promote Students' Use of Diagrams in Mathematics Problem Solving?

    ERIC Educational Resources Information Center

    Uesaka, Yuri; Manalo, Emmanuel; Ichikawa, Shin'ichi

    2007-01-01

    This study investigated factors promoting the use of self-constructed diagrams by examining students' perceptions and daily class activities, and comparing Japanese (n = 291) and New Zealand (n = 323) students. Algebra word problems and a questionnaire were administered. The results revealed that the New Zealand students used diagrams more often…

  13. Structure-retention diagrams of ceramides established for their identification.

    PubMed

    Gaudin, Karen; Chaminade, Pierre; Baillet, Arlette

    2002-10-11

    Molecular species analysis of ceramides was carried out using porous graphitic carbon with gradient elution: chloroform-methanol from 45:55 to 85:15 with a slope at 2.7%/min. These conditions gave a linear relationship between retention data and structure of ceramides. It was demonstrated that linearity occurred when a high slope value of linear gradient elution was used. Thereby the linear diagram was evolved by plotting the adjusted retention time against the total number of carbon atoms of ceramide molecules. Each line represents one ceramide class. Such a Structure-Retention Diagram describes ceramide retention and thus constitutes an identification method using only retention data. This Structure-Retention Diagram was assessed and compared to another obtained from octadesyl-grafted silica in terms of their reproducibility, precision and ability to provide ceramide identification. Better identification was obtained using the results from both Structure-Retention Diagrams. This approach with a two-dimensional separation system allowed to take advantage of the specificity of both identification models. PMID:12437165

  14. Cell flipping in permutation diagrams

    NASA Astrophysics Data System (ADS)

    Golumbic, Martin Charles; Kaplang, Haim

    Permutation diagrams have been used in circuit design to model a set of single point nets crossing a channel, where the minimum number of layers needed to realize the diagram equals the clique number ω(G) of its permutation graph, the value of which can be calculated in O(n log n) time. We consider a generalization of this model motivated by "standard cell" technology in which the numbers on each side of the channel are partitioned into consecutive subsequences, or cells, each of which can be left unchanged or flipped (i.e., reversed). We ask, for what choice of fiippings will the resulting clique number be minimum or maximum. We show that when one side of the channel is fixed (no flipping), an optimal flipping for the other side can be found in O(n log n) time for the maximum clique number. We prove that the general problem is NP-complete for the minimum clique number and O(n 2) for the maximum clique number. Moreover, since the complement of a permutation graph is also a permutation graph, the same complexity results hold for the independence number.

  15. Phase Diagrams of Nuclear Pasta

    NASA Astrophysics Data System (ADS)

    Caplan, Matthew; Horowitz, Chuck; Berry, Don; da Silva Schneider, Andre

    2016-03-01

    In the inner crust of neutrons stars, where matter is near the saturation density, protons and neutrons arrange themselves into complex structures called nuclear pasta. Early theoretical work predicted a simple graduated hierarchy of pasta phases, consisting of spheres, cylinders, slabs, and uniform matter with voids. Previous work has simulated these phases with a simple classical model and has shown that the formation of these structures is dependent on the temperature, density, and proton fraction. However, previous work only studied a limited range of these parameters due to computational limitations. Thanks to recent advances in computing it is now possible to survey the structure of nuclear pasta for a larger range of parameters. By simulating nuclear pasta with constant temperature and proton fraction in an expanding simulation volume we are able to study the phase transitions in nuclear pasta, and thus produce a set of phase diagrams. We report on these phase diagrams as well as newly identified phases of nuclear pasta and discuss their implications for neutron star observables.

  16. Fostering Multilinguality in the UMLS: A Computational Approach to Terminology Expansion for Multiple Languages

    PubMed Central

    Hellrich, Johannes; Hahn, Udo

    2014-01-01

    We here report on efforts to computationally support the maintenance and extension of multilingual biomedical terminology resources. Our main idea is to treat term acquisition as a classification problem guided by term alignment in parallel multilingual corpora, using termhood information coming from of a named entity recognition system as a novel feature. We report on experiments for Spanish, French, German and Dutch parts of a multilingual UMLS-derived biomedical terminology. These efforts yielded 19k, 18k, 23k and 12k new terms and synonyms, respectively, from which about half relate to concepts without a previously available term label for these non-English languages. Based on expert assessment of a novel German terminology sample, 80% of the newly acquired terms were judged as reasonable additions to the terminology. PMID:25954371

  17. Automatic acquisition of synonyms from French UMLS for enhanced search of EHRs.

    PubMed

    Grabar, Natalia; Varoutas, Paul-Christophe; Rizand, Philippe; Livartowski, Alain; Hamon, Thierry

    2008-01-01

    Currently, the use of Natural Language Processing (NLP) approaches in order to improve search and exploration of electronic health records (EHRs) within healthcare information systems is not a common practice. One reason for this is the lack of suitable lexical resources: various types of such resources need to be collected or acquired. In this work, we propose a novel method for the acquisition of synonymous resources. This method is language-independent and relies on existence of structured terminologies. It enables to decipher hidden synonymous relations between simple words and terms on the basis of their syntactic analysis and exploitation of their compositionality. Applied to series of synonym terms from the French subset of the UMLS, the method shows 99% precision. The overlap between thus inferred terms and the existing sparse resources of synonyms is very low. PMID:18487831

  18. Fostering Multilinguality in the UMLS: A Computational Approach to Terminology Expansion for Multiple Languages.

    PubMed

    Hellrich, Johannes; Hahn, Udo

    2014-01-01

    We here report on efforts to computationally support the maintenance and extension of multilingual biomedical terminology resources. Our main idea is to treat term acquisition as a classification problem guided by term alignment in parallel multilingual corpora, using termhood information coming from of a named entity recognition system as a novel feature. We report on experiments for Spanish, French, German and Dutch parts of a multilingual UMLS-derived biomedical terminology. These efforts yielded 19k, 18k, 23k and 12k new terms and synonyms, respectively, from which about half relate to concepts without a previously available term label for these non-English languages. Based on expert assessment of a novel German terminology sample, 80% of the newly acquired terms were judged as reasonable additions to the terminology. PMID:25954371

  19. Higher-order gravitational lensing reconstruction using Feynman diagrams

    SciTech Connect

    Jenkins, Elizabeth E.; Manohar, Aneesh V.; Yadav, Amit P.S.; Waalewijn, Wouter J. E-mail: amanohar@ucsd.edu E-mail: ayadav@physics.ucsd.edu

    2014-09-01

    We develop a method for calculating the correlation structure of the Cosmic Microwave Background (CMB) using Feynman diagrams, when the CMB has been modified by gravitational lensing, Faraday rotation, patchy reionization, or other distorting effects. This method is used to calculate the bias of the Hu-Okamoto quadratic estimator in reconstructing the lensing power spectrum up to  O (φ{sup 4}) in the lensing potential φ. We consider both the diagonal noise TT TT, EB EB, etc. and, for the first time, the off-diagonal noise TT TE, TB EB, etc. The previously noted large  O (φ{sup 4}) term in the second order noise is identified to come from a particular class of diagrams. It can be significantly reduced by a reorganization of the φ expansion. These improved estimators have almost no bias for the off-diagonal case involving only one B component of the CMB, such as EE EB.

  20. Hubble's diagram and cosmic expansion

    PubMed Central

    Kirshner, Robert P.

    2004-01-01

    Edwin Hubble's classic article on the expanding universe appeared in PNAS in 1929 [Hubble, E. P. (1929) Proc. Natl. Acad. Sci. USA 15, 168–173]. The chief result, that a galaxy's distance is proportional to its redshift, is so well known and so deeply embedded into the language of astronomy through the Hubble diagram, the Hubble constant, Hubble's Law, and the Hubble time, that the article itself is rarely referenced. Even though Hubble's distances have a large systematic error, Hubble's velocities come chiefly from Vesto Melvin Slipher, and the interpretation in terms of the de Sitter effect is out of the mainstream of modern cosmology, this article opened the way to investigation of the expanding, evolving, and accelerating universe that engages today's burgeoning field of cosmology. PMID:14695886

  1. Phase diagram of ammonium nitrate

    NASA Astrophysics Data System (ADS)

    Dunuwille, M.; Yoo, C. S.

    2014-05-01

    Ammonium Nitrate (AN) has often subjected to uses in improvised explosive devices, due to its wide availability as a fertilizer and its capability of becoming explosive with slight additions of organic and inorganic compounds. Yet, the origin of enhanced energetic properties of impure AN (or AN mixtures) is neither chemically unique nor well understood -resulting in rather catastrophic disasters in the past1 and thereby a significant burden on safety in using ammonium nitrates even today. To remedy this situation, we have carried out an extensive study to investigate the phase stability of AN at high pressure and temperature, using diamond anvil cells and micro-Raman spectroscopy. The present results confirm the recently proposed phase IV-to-IV' transition above 17 GPa2 and provide new constraints for the melting and phase diagram of AN to 40 GPa and 400 °C.

  2. Towards linking patients and clinical information: detecting UMLS concepts in e-mail.

    PubMed

    Brennan, Patricia Flatley; Aronson, Alan R

    2003-01-01

    The purpose of this project is to explore the feasibility of detecting terms within the electronic messages of patients that could be used to effectively search electronic knowledge resources and bring health information resources into the hands of patients. Our team is exploring the application of the natural language processing (NLP) tools built within the Lister Hill Center at the National Library of Medicine (NLM) to the challenge of detecting relevant concepts from the Unified Medical Language System (UMLS) within the free text of lay people's electronic messages (e-mail). We obtained a sample of electronic messages sent by patients participating in a randomized field evaluation of an internet-based home care support service to the project nurse, and we subjected elements of these messages to a series of analyses using several vocabularies from the UMLS Metathesaurus and the selected NLP tools. The nursing vocabularies provide an excellent starting point for this exercise because their domain encompasses patient's responses to health challenges. In successive runs we augmented six nursing vocabularies (NANDA Nursing Diagnosis, Nursing Interventions Classification, Nursing Outcomes Classification, Home Health Classification, Omaha System, and the Patient Care Data Set) with selected sets of clinical terminologies (International Classification of Primary Care; International Classification of Primary Care- American English; Micromedex DRUGDEX; National Drug Data File; Thesaurus of Psychological Terms; WHO Adverse Drug Reaction Terminology) and then additionally with either Medical Subject Heading (MeSH) or SNOMED International terms. The best performance was obtained when the nursing vocabularies were complemented with selected clinical terminologies. These findings have implications not only for facilitating lay people's access to electronic knowledge resources but may also be of assistance in developing new tools to aid in linking free text (e.g., clinical

  3. Diagramming the Never Ending Story: Student-generated diagrammatic stories integrate and retain science concepts improving science literacy

    NASA Astrophysics Data System (ADS)

    Pillsbury, Ralph T.

    This research examined an instructional strategy called Diagramming the Never Ending Story: A method called diagramming was taught to sixth grade students via an outdoor science inquiry ecology unit. Students generated diagrams of the new ecology concepts they encountered, creating explanatory 'captions' for their newly drawn diagrams while connecting them in a memorable story. The diagramming process culminates in 20-30 meter-long murals called the Never Ending Story: Months of science instruction are constructed as pictorial scrolls, making sense of all new science concepts they encounter. This method was taught at a North Carolina "Public" Charter School, Children's Community School, to measure its efficacy in helping students comprehend scientific concepts and retain them thereby increasing science literacy. There were four demographically similar classes of 20 students each. Two 'treatment' classes, randomly chosen from the four classes, generated their own Never Ending Stories after being taught the diagramming method. A Solomon Four-Group Design was employed: Two Classes (one control, one treatment) were administered pre- and post; two classes received post tests only. The tests were comprised of multiple choice, fill-in and extended response (open-ended) sections. Multiple choice and fill-in test data were not statistically significant whereas extended response test data confirm that treatment classes made statistically significant gains.

  4. The neptunium-iron phase diagram

    NASA Astrophysics Data System (ADS)

    Gibson, J. K.; Haire, R. G.; Beahm, E. C.; Gensini, M. M.; Maeda, A.; Ogawa, T.

    1994-08-01

    The phase relations in the Np-Fe alloy system have been elucidated using differential thermal analysis. A phase diagram for this system is postulated based upon the experimental results, regular-solution model calculations, and an expected correspondence to the U-Fe and Pu-Fe diagrams. The postulated Np-Fe diagram is characterized by limited terminal solid solubilities, two intermetallic solid phases, NpFe 2 and Np 6Fe, and two eutectics.

  5. Ion potential diagrams for electrochromic devices

    SciTech Connect

    Varsano, F. |; Cahen, D.; Decker, F.; Guillemoles, J.F. |; Masetti, E.

    1998-12-01

    Ion potential diagrams can facilitate the description of systems in which ionic species are mobile. They depict qualitatively the spatial dependence of the potential energy for mobile ions, somewhat akin to band diagrams for electrons. The authors construct ion potential diagrams for the mixed conducting (oxide), optically active electrodes of five-layer electrochromic devices, based on reversible Li{sup +} intercalation. These serve to analyze stability problems that arise in these systems. The authors then use them as building blocks to arrive at ion diagrams for complete devices. This allows analyses of (dis)coloration kinetics.

  6. Multiple representations and free-body diagrams: Do students benefit from using them?

    NASA Astrophysics Data System (ADS)

    Rosengrant, David R.

    2007-12-01

    Introductory physics students have difficulties understanding concepts and solving problems. When they solve problems, they use surface features of the problems to find an equation to calculate a numerical answer often not understanding the physics in the problem. How do we help students approach problem solving in an expert manner? A possible answer is to help them learn to represent knowledge in multiple ways and then use these different representations for conceptual understanding and problem solving. This solution follows from research in cognitive science and in physics education. However, there are no studies in physics that investigate whether students who learn to use multiple representations are in fact better problem solvers. This study focuses on one specific representation used in physics--a free body diagram. A free-body diagram is a graphical representation of forces exerted on an object of interest by other objects. I used the free-body diagram to investigate five main questions: (1) If students are in a course where they consistently use free body diagrams to construct and test concepts in mechanics, electricity and magnetism and to solve problems in class and in homework, will they draw free-body diagrams on their own when solving exam problems? (2) Are students who use free-body diagrams to solve problems more successful then those who do not? (3) Why do students draw free-body diagrams when solving problems? (4) Are students consistent in constructing diagrams for different concepts in physics and are they consistent in the quality of their diagrams? (5) What are possible relationships between features of a problem and how likely a student will draw a free body diagram to help them solve the problem? I utilized a mixed-methods approach to answer these questions. Questions 1, 2, 4 and 5 required a quantitative approach while question 3 required a qualitative approach, a case study. When I completed my study, I found that if students are in an

  7. "Racializing" Class

    ERIC Educational Resources Information Center

    Hatt-Echeverria, Beth; Urrieta, Luis, Jr.

    2003-01-01

    In an effort to explore how racial and class oppressions intersect, the authors use their autobiographical narratives to depict cultural and experiential continuity and discontinuity in growing up white working class versus Chicano working class. They specifically focus on "racializing class" due to the ways class is often used as a copout by…

  8. Phase diagram of ammonium nitrate

    SciTech Connect

    Dunuwille, Mihindra; Yoo, Choong-Shik

    2013-12-07

    Ammonium Nitrate (AN) is a fertilizer, yet becomes an explosive upon a small addition of chemical impurities. The origin of enhanced chemical sensitivity in impure AN (or AN mixtures) is not well understood, posing significant safety issues in using AN even today. To remedy the situation, we have carried out an extensive study to investigate the phase stability of AN and its mixtures with hexane (ANFO–AN mixed with fuel oil) and Aluminum (Ammonal) at high pressures and temperatures, using diamond anvil cells (DAC) and micro-Raman spectroscopy. The results indicate that pure AN decomposes to N{sub 2}, N{sub 2}O, and H{sub 2}O at the onset of the melt, whereas the mixtures, ANFO and Ammonal, decompose at substantially lower temperatures. The present results also confirm the recently proposed phase IV-IV{sup ′} transition above 17 GPa and provide new constraints for the melting and phase diagram of AN to 40 GPa and 400°C.

  9. Phase Diagram of Ammonium Nitrate

    NASA Astrophysics Data System (ADS)

    Dunuwille, Mihindra; Yoo, Choong-Shik

    2013-06-01

    Ammonium Nitrate (AN) has often been subjected to uses in improvised explosive devices, due to its wide availability as a fertilizer and its capability of becoming explosive with slight additions of organic and inorganic compounds. Yet, the origin of enhanced energetic properties of impure AN (or AN mixtures) is neither chemically unique nor well understood - resulting in rather catastrophic disasters in the past1 and thereby a significant burden on safety, in using ammonium nitrates even today. To remedy this situation, we have carried out an extensive study to investigate the phase stability of AN, in different chemical environments, at high pressure and temperature, using diamond anvil cells and micro-Raman spectroscopy. The present results confirm the recently proposed phase IV-to-IV' transition above 15 GPa2 and provide new constraints for the melting and phase diagram of AN to 40 GPa and 673 K. The present study has been supported by the U.S. DHS under Award Number 2008-ST-061-ED0001.

  10. Reading fitness landscape diagrams through HSAB concepts

    NASA Astrophysics Data System (ADS)

    Vigneresse, Jean-Louis

    2014-10-01

    Fitness landscapes are conceived as range of mountains, with local peaks and valleys. In terms of potential, such topographic variations indicate places of local instability or stability. The chemical potential, or electronegativity, its value changed of sign, carries similar information. In addition to chemical descriptors defined through hard-soft acid-base (HSAB) concepts and computed through density functional theory (DFT), the principles that rule chemical reactions allow the design of such landscape diagrams. The simplest diagram uses electrophilicity and hardness as coordinates. It allows examining the influence of maximum hardness or minimum electrophilicity principles. A third dimension is introduced within such a diagram by mapping the topography of electronegativity, polarizability or charge exchange. Introducing charge exchange during chemical reactions, or mapping a third parameter (f.i. polarizability) reinforces the information carried by a simple binary diagram. Examples of such diagrams are provided, using data from Earth Sciences, simple oxides or ligands.

  11. FeynChois: System for automating the process of Feynman diagram generation

    NASA Astrophysics Data System (ADS)

    Choi, Chul-Woo

    We have developed a DTD (Document Type Definition) for an XML (Extensible Markup Language) document for describing Feynman rules of quantum field theoretical models---the document is called FeynPage. A FeynPage can be any XML document that conforms to the FeynPage DTD. A FeynPage can be understood by a human or a computer program that is aware of the FeynPage DTD. We have also developed a Feynman diagram generator, which has been named FeynChois. It provides a user with a full GUI (Graphical User Interface) environment. More importantly, FeynChois knows how to read FeynPage. When FeynChois is asked by a user to generate diagrams, it will first look up the rules in the FeynPage; then, it will generate diagrams according to the rules for any process specified by the user. If the Feynman rules in a FeynPage are modified, FeynChois will generate diagrams according to the modified rules. What FeynChois generates are actually Java(TM) objects that represent Feynman diagrams. These objects are graphically displayed in the GUI. A user can edit, remove, and/or save the diagrams mostly by mouse operations. The Java classes for Feynman diagram objects together with FeynPage and FeynChois make up the FeynChois system. The dissertation details what the FeynChois system is and how it works.

  12. Faceting diagram for sticky steps

    NASA Astrophysics Data System (ADS)

    Akutsu, Noriko

    2016-03-01

    Faceting diagrams for the step-faceting zone, the step droplet zone, and the Gruber-Mullins-Pokrovsky-Talapov (GMPT) zone for a crystal surface are obtained by using the density matrix renormalization group method to calculate the surface tension. The model based on these calculations is the restricted solid-on-solid (RSOS) model with a point-contact-type step-step attraction (p-RSOS model) on a square lattice. The point-contact-type step-step attraction represents the energy gain obtained by forming a bonding state with orbital overlap at the meeting point of the neighboring steps. In the step-faceting zone, disconnectedness in the surface tension leads to the formation of a faceted macrostep on a vicinal surface at equilibrium. The disconnectedness in the surface tension also causes the first-order shape transition for the equilibrium shape of a crystal droplet. The lower zone boundary line (ZBL), which separates the step-faceting zone and the step droplet zone, is obtained by the condition γ 1 = lim n → ∞ γ n / n , where γn is the step tension of the n-th merged step. The upper ZBL, which separates the GMPT zone and the step droplet zone, is obtained by the condition Aq,eff = 0 and Bq,eff = 0, where Aq,eff and Bq,eff represent the coefficients for the | q → | 2 term and the | q → | 3 term, respectively, in the | q → | -expanded form of the surface free energy f eff ( q → ) . Here, q → is the surface gradient relative to the (111) surface. The reason why the vicinal surface inclined in the <101> direction does not exhibit step-faceting is explained in terms of the one-dimensional spinless quasi-impenetrable attractive bosons at absolute zero.

  13. A UMLS-based Knowledge Acquisition Tool for Rule-based Clinical Decision Support System Development

    PubMed Central

    Achour, Soumeya L.; Dojat, Michel; Rieux, Claire; Bierling, Philippe; Lepage, Eric

    2001-01-01

    Decision support systems in the medical field have to be easily modified by medical experts themselves. The authors have designed a knowledge acquisition tool to facilitate the creation and maintenance of a knowledge base by the domain expert and its sharing and reuse by other institutions. The Unified Medical Language System (UMLS) contains the domain entities and constitutes the relations repository from which the expert builds, through a specific browser, the explicit domain ontology. The expert is then guided in creating the knowledge base according to the pre-established domain ontology and condition–action rule templates that are well adapted to several clinical decision-making processes. Corresponding medical logic modules are eventually generated. The application of this knowledge acquisition tool to the construction of a decision support system in blood transfusion demonstrates the value of such a pragmatic methodology for the design of rule-based clinical systems that rely on the highly progressive knowledge embedded in hospital information systems. PMID:11418542

  14. Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

    PubMed Central

    Aronson, A. R.

    2001-01-01

    The UMLS Metathesaurus, the largest thesaurus in the biomedical domain, provides a representation of biomedical knowledge consisting of concepts classified by semantic type and both hierarchical and non-hierarchical relationships among the concepts. This knowledge has proved useful for many applications including decision support systems, management of patient records, information retrieval (IR) and data mining. Gaining effective access to the knowledge is critical to the success of these applications. This paper describes MetaMap, a program developed at the National Library of Medicine (NLM) to map biomedical text to the Metathesaurus or, equivalently, to discover Metathesaurus concepts referred to in text. MetaMap uses a knowledge intensive approach based on symbolic, natural language processing (NLP) and computational linguistic techniques. Besides being applied for both IR and data mining applications, MetaMap is one of the foundations of NLM's Indexing Initiative System which is being applied to both semi-automatic and fully automatic indexing of the biomedical literature at the library. PMID:11825149

  15. A model-based design and validation approach with OMEGA-UML and the IF toolset

    NASA Astrophysics Data System (ADS)

    Ben-hafaiedh, Imene; Constant, Olivier; Graf, Susanne; Robbana, Riadh

    2009-03-01

    Intelligent, embedded systems such as autonomous robots and other industrial systems are becoming increasingly more heterogeneous with respect to the platforms on which they are implemented, and thus the software architecture more complex to design and analyse. In this context, it is important to have well-defined design methodologies which should be supported by (1) high level design concepts allowing to master the design complexity, (2) concepts for the expression of non-functional requirements and (3) analysis tools allowing to verify or invalidate that the system under development will be able to conform to its requirements. We illustrate here such an approach for the design of complex embedded systems on hand of a small case study used as a running example for illustration purposes. We briefly present the important concepts of the OMEGA-RT UML profile, we show how we use this profile in a modelling approach, and explain how these concepts are used in the IFx verification toolbox to integrate validation into the design flow and make scalable verification possible.

  16. Developing the earthquake markup language and database with UML and XML schema

    NASA Astrophysics Data System (ADS)

    Babaie, Hassan A.; Babaei, Abbed

    2005-11-01

    Seismic information is commonly shared across networks, and stored in heterogeneous databases that are maintained by different and autonomous groups. Because the metadata of the seismic information is generally not structured, information loss commonly occurs when data is transmitted from one source to another. Minimizing such information loss and enhancing information interchange over the Web require construction of specific markup languages for each part of seismology. The sub-disciplinary data syntax and vocabularies allow construction of corresponding relational databases to store and interchange the structured data. Developing modular data structures and databases for each sub-discipline allows composition of new languages through reuse, and enables future extension of the vocabulary and maintenance of the knowledge base. In this paper, we show how to design the conceptual and logical models for a small set of seismology that deals with earthquake ( EarthquakeML). We discuss the application of the UML to the design and mapping of the object model into W3 XML Schema and database. The emphasis is on designing components that can be reused across discipline, and reduce redundancies by developing type libraries. We show how to map the XML schema into a relational data model; and implement the EarthquakeDB with the Microsoft Access DBMS.

  17. Algorithmic Identification for Wings in Butterfly Diagrams.

    NASA Astrophysics Data System (ADS)

    Illarionov, E. A.; Sokolov, D. D.

    2012-12-01

    We investigate to what extent the wings of solar butterfly diagrams can be separated without an explicit usage of Hale's polarity law as well as the location of the solar equator. Two algorithms of cluster analysis, namely DBSCAN and C-means, have demonstrated their ability to separate the wings of contemporary butterfly diagrams based on the sunspot group density in the diagram only. Here we generalize the method for continuous tracers, give results concerning the migration velocities and presented clusters for 12 - 20 cycles.

  18. A Hubble Diagram for Quasars

    NASA Astrophysics Data System (ADS)

    Risaliti, G.; Lusso, E.

    2015-12-01

    We present a new method to test the ΛCDM cosmological model and to estimate cosmological parameters based on the nonlinear relation between the ultraviolet and X-ray luminosities of quasars. We built a data set of 1138 quasars by merging several samples from the literature with X-ray measurements at 2 keV and SDSS photometry, which was used to estimate the extinction-corrected 2500 Å flux. We obtained three main results: (1) we checked the nonlinear relation between X-ray and UV luminosities in small redshift bins up to z˜ 6, confirming that the relation holds at all redshifts with the same slope; (2) we built a Hubble diagram for quasars up to z˜ 6, which is well matched to that of supernovae in the common z = 0-1.4 redshift interval and extends the test of the cosmological model up to z˜ 6; and (3) we showed that this nonlinear relation is a powerful tool for estimating cosmological parameters. Using the present data and assuming a ΛCDM model, we obtain {{{Ω }}}M = 0.22{}-0.08+0.10 and {{{Ω }}}{{Λ }} = 0.92{}-0.30+0.18 ({{{Ω }}}M = 0.28 ± 0.04 and {{{Ω }}}{{Λ }} = 0.73 +/- 0.08 from a joint quasar-SNe fit). Much more precise measurements will be achieved with future surveys. A few thousand SDSS quasars already have serendipitous X-ray observations from Chandra or XMM-Newton, and at least 100,000 quasars with UV and X-ray data will be made available by the extended ROentgen Survey with an Imaging Telescope Array all-sky survey in a few years. The Euclid, Large Synoptic Survey Telescope, and Advanced Telescope for High ENergy Astrophysics surveys will further increase the sample size to at least several hundred thousand. Our simulations show that these samples will provide tight constraints on the cosmological parameters and will allow us to test for possible deviations from the standard model with higher precision than is possible today.

  19. Phase diagram for passive electromagnetic scatterers.

    PubMed

    Lee, Jeng Yi; Lee, Ray-Kuang

    2016-03-21

    With the conservation of power, a phase diagram defined by amplitude square and phase of scattering coefficients for each spherical harmonic channel is introduced as a universal map for any passive electromagnetic scatterers. Physically allowable solutions for scattering coefficients in this diagram clearly show power competitions among scattering and absorption. It also illustrates a variety of exotic scattering or absorption phenomena, from resonant scattering, invisible cloaking, to coherent perfect absorber. With electrically small core-shell scatterers as an example, we demonstrate a systematic method to design field-controllable structures based on the allowed trajectories in this diagram. The proposed phase diagram and inverse design can provide tools to design functional electromagnetic devices. PMID:27136839

  20. A Smart Thermal Block Diagram Tool

    NASA Technical Reports Server (NTRS)

    Tsuyuki, Glenn; Miyake, Robert; Dodge, Kyle

    2008-01-01

    The presentation describes a Smart Thermal Block Diagram Tool. It is used by JPL's Team X in studying missions during the Pre-Phase A. It helps generate cost and mass estimates using proprietary data bases.

  1. The Art of Free-Body Diagrams.

    ERIC Educational Resources Information Center

    Puri, Avinash

    1996-01-01

    Discusses the difficulty of drawing free-body diagrams which only show forces exerted on a body from its neighbors. Presents three ways a body may be modeled: a particle, rigid extended, and nonrigid extended. (MKR)

  2. An Improved Mnemonic Diagram for Thermodynamic Relationships.

    ERIC Educational Resources Information Center

    Rodriguez, Joaquin; Brainard, Alan J.

    1989-01-01

    Considers pressure, volume, entropy, temperature, Helmholtz free energy, Gibbs free energy, enthalpy, and internal energy. Suggests the mnemonic diagram is for use with simple systems that are defined as macroscopically homogeneous, isotropic, uncharged, and chemically inert. (MVL)

  3. Lattice and Phase Diagram in QCD

    SciTech Connect

    Lombardo, Maria Paola

    2008-10-13

    Model calculations have produced a number of very interesting expectations for the QCD Phase Diagram, and the task of a lattice calculations is to put these studies on a quantitative grounds. I will give an overview of the current status of the lattice analysis of the QCD phase diagram, from the quantitative results of mature calculations at zero and small baryochemical potential, to the exploratory studies of the colder, denser phase.

  4. Fluctuations and the QCD phase diagram

    SciTech Connect

    Schaefer, B.-J.

    2012-06-15

    In this contribution the role of quantum fluctuations for the QCD phase diagram is discussed. This concerns in particular the importance of the matter back-reaction to the gluonic sector. The impact of these fluctuations on the location of the confinement/deconfinement and the chiral transition lines as well as their interrelation are investigated. Consequences of our findings for the size of a possible quarkyonic phase and location of a critical endpoint in the phase diagram are drawn.

  5. Elementary diagrams in nuclear and neutron matter

    SciTech Connect

    Wiringa, R.B.

    1995-08-01

    Variational calculations of nuclear and neutron matter are currently performed using a diagrammatic cluster expansion with the aid of nonlinear integral equations for evaluating expectation values. These are the Fermi hypernetted chain (FHNC) and single-operator chain (SOC) equations, which are a way of doing partial diagram summations to infinite order. A more complete summation can be made by adding elementary diagrams to the procedure. The simplest elementary diagrams appear at the four-body cluster level; there is one such E{sub 4} diagram in Bose systems, but 35 diagrams in Fermi systems, which gives a level of approximation called FHNC/4. We developed a novel technique for evaluating these diagrams, by computing and storing 6 three-point functions, S{sub xyz}(r{sub 12}, r{sub 13}, r{sub 23}), where xyz (= ccd, cce, ddd, dde, dee, or eee) denotes the exchange character at the vertices 1, 2, and 3. All 35 Fermi E{sub 4} diagrams can be constructed from these 6 functions and other two-point functions that are already calculated. The elementary diagrams are known to be important in some systems like liquid {sup 3}He. We expect them to be small in nuclear matter at normal density, but they might become significant at higher densities appropriate for neutron star calculations. This year we programmed the FHNC/4 contributions to the energy and tested them in a number of simple model cases, including liquid {sup 3}He and Bethe`s homework problem. We get reasonable, but not exact agreement with earlier published work. In nuclear and neutron matter with the Argonne v{sub 14} interaction these contributions are indeed small corrections at normal density and grow to only 5-10 MeV/nucleon at 5 times normal density.

  6. ISS EPS Orbital Replacement Unit Block Diagrams

    NASA Technical Reports Server (NTRS)

    Schmitz, Gregory V.

    2001-01-01

    The attached documents are being provided to Switching Power Magazine for information purposes. This magazine is writing a feature article on the International Space Station Electrical Power System, focusing on the switching power processors. These units include the DC-DC Converter Unit (DDCU), the Bi-directional Charge/Discharge Unit (BCDU), and the Sequential Shunt Unit (SSU). These diagrams are high-level schematics/block diagrams depicting the overall functionality of each unit.

  7. A universal structured-design diagramer

    NASA Technical Reports Server (NTRS)

    1981-01-01

    Program (FLOWCHARTER) generates standardized flowcharts and concordances for development and debugging of programs in any language. User describes programming-language grammar, providing syntax rules in Backus-Naur form (BNF), list of semantic rules, and set of concordance rules. Once grammar is described, user supplies only source code of program to be diagrammed. FLOWCHARTER automatically produces flow diagram and concordance. Source code for program is written for PASCAL Release 2 compiler, as distributed by University of Minnesota.

  8. Pressure-enthalpy diagrams for alternative refrigerants

    SciTech Connect

    Chen, J.; Kruse, H.

    1996-10-01

    Thermodynamic diagrams, particularly log(p)-h diagrams, have become very convenient tools for refrigeration and air-conditioning industries. To promote alternative refrigerants-related development and application, it is urgently required to provide the industries with reliable engineering diagrams for the most promising candidate refrigerants. A computer program has been developed for automatically producing log(p)-h diagrams for alternative refrigerants. The Lee Kesler Ploecker (LKP) equation of state has been used to calculate thermodynamic data. Some modifications have been made to the LKP to improve the calculation convergency. In this paper three sample diagrams for R134a, a binary R410A and a ternary R407B which have been enclosed and analyzed. To investigate the LKP calculation accuracy details, an extensive deviation analysis has been made for R134a. For mixed refrigerants, good calculation accuracy was achieved by optimizing the binary interactive parameters. The system can produce log(p)-h diagrams with reliable accuracy, high quality, and flexibility to meet any size and color requirements.

  9. Shock dynamics of phase diagrams

    SciTech Connect

    Moro, Antonio

    2014-04-15

    A thermodynamic phase transition denotes a drastic change of state of a physical system due to a continuous change of thermodynamic variables, as for instance pressure and temperature. The classical van der Waals equation of state is the simplest model that predicts the occurrence of a critical point associated with the gas–liquid phase transition. Nevertheless, below the critical temperature theoretical predictions of the van der Waals theory significantly depart from the observed physical behaviour. We develop a novel approach to classical thermodynamics based on the solution of Maxwell relations for a generalised family of nonlocal entropy functions. This theory provides an exact mathematical description of discontinuities of the order parameter within the phase transition region, it explains the universal form of the equations of state and the occurrence of triple points in terms of the dynamics of nonlinear shock wave fronts. -- Highlights: •A new generalisation of van der Waals equation of state. •Description of phase transitions in terms of shock dynamics of state curves. •Proof of the universality of equations of state for a general class of models. •Interpretation of triple points as confluence of classical shock waves. •Correspondence table between thermodynamics and nonlinear conservation laws.

  10. Expanding the Extent of a UMLS Semantic Type via Group Neighborhood Auditing

    PubMed Central

    Chen, Yan; Gu, Huanying; Perl, Yehoshua; Halper, Michael; Xu, Junchuan

    2009-01-01

    Objective Each Unified Medical Language System (UMLS) concept is assigned one or more semantic types (ST). A dynamic methodology for aiding an auditor in finding concepts that are missing the assignment of a given ST, S is presented. Design The first part of the methodology exploits the previously introduced Refined Semantic Network and accompanying refined semantic types (RST) to help narrow the search space for offending concepts. The auditing is focused in a neighborhood surrounding the extent of an RST, T (of S) called an envelope, consisting of parents and children of concepts in the extent. The audit moves outward as long as missing assignments are discovered. In the second part, concepts not reached previously are processed and reassigned T as needed during the processing of S's other RSTs. The set of such concepts is expanded in a similar way to that in the first part. Measurements The number of errors discovered is reported. To measure the methodology's efficiency, “error hit rates” (i.e., errors found in concepts examined) are computed. Results The methodology was applied to three STs: Experimental Model of Disease (EMD), Environmental Effect of Humans, and Governmental or Regulatory Activity. The EMD experienced the most drastic change. For its RST “EMD ∩ Neoplastic Process” (RST “EMD”) with only 33 (31) original concepts, 915 (134) concepts were found by the first (second) part to be missing the EMD assignment. Changes to the other two STs were smaller. Conclusion The results show that the proposed auditing methodology can help to effectively and efficiently identify concepts lacking the assignment of a particular semantic type. PMID:19567802

  11. Class Size.

    ERIC Educational Resources Information Center

    Johnston, Holly R.

    Exploring the class-size issue, this paper focuses on the primary grades and asks questions such as "does a reduction in class size promote an increase in academic achievement?" and "how substantial does the reduction in numbers have to be in order for a significant increase to occur?" The paper surveys debates on class size and the social factors…

  12. Class Size.

    ERIC Educational Resources Information Center

    Underwood, Siobhan; Lumsden, Linda S.

    1994-01-01

    The items featured in this annotated bibliography touch on several aspects of the multifaceted class-size debate. Allen Odden reviews the literature and contends that class-size reduction should be used "sparingly and strategically." C. M. Achilles and colleagues examines two different class-size situations and find student test performance in the…

  13. Class Matters

    ERIC Educational Resources Information Center

    Valdata, Patricia

    2005-01-01

    Ever since George Washington opted for the title of president rather than king, Americans have been uncomfortable with the idea of class distinctions. This article presents an interview with Dr. Janet Galligani Casey regarding the idea of class distinctions. Galligani Casey, who grew up in a working-class neighborhood in Somerville, Massachusetts,…

  14. The effects of Roundhouse diagram construction and use on meaningful science learning in the middle school classroom

    NASA Astrophysics Data System (ADS)

    Ward, Robin Eichel

    This research explored the effects of Roundhouse diagram construction and use on meaningful learning of science concepts in a 6th-grade science classroom. This investigation examined the transformation of students' science concepts as they became more proficient in constructing Roundhouse diagrams, what problems students encountered while constructing Roundhouse diagrams, and how choices of iconic images affected their progress in meaningfully learning science concepts as they constructed a series of Roundhouse diagrams. The process of constructing a Roundhouse diagram involved recognizing the learner's relevant existing concepts, evaluating the central concepts for a science lesson and breaking them down into their component parts, reconstructing the learner's conceptual framework by reducing the amount of detail efficiently, reviewing the reconstruction process, and linking each key concept to an iconic image. The researcher collected and analyzed qualitative and quantitative data to determine the effectiveness of the Roundhouse diagram. Data included field notes, observations, students' responses to Roundhouse diagram worksheets, students' perceptions from evaluation sheets, students' mastery of technique sheets, tapes and transcripts of students' interviews, student-constructed Roundhouse diagrams, and documentation of science grades both pre- and post-Roundhouse diagramming. This multiple case study focused on six students although the whole class was used for statistical purposes. Stratified purposeful sampling was used to facilitate comparisons as well as week-by-week comparisons of students' science grades and Roundhouse diagram scores to gain additional insight into the effectiveness of the Roundhouse diagramming method. Through participation in constructing a series of Roundhouse diagrams, middle school students gained a greater understanding of science concepts. Roundhouse diagram scores improved over time during the 10-week Roundhouse diagramming

  15. Students' Understanding of Diagrams for Solving Word Problems: A Framework for Assessing Diagram Proficiency

    ERIC Educational Resources Information Center

    Poch, Apryl L.; van Garderen, Delinda; Scheuermann, Amy M.

    2015-01-01

    A visual representation, such as a diagram, can be a powerful strategy for solving mathematical word problems. However, using a representation to solve mathematical word problems is not as simple as it seems! Many students with learning disabilities struggle to use a diagram effectively and efficiently. This article provides a framework for…

  16. The Semiotic Structure of Geometry Diagrams: How Textbook Diagrams Convey Meaning

    ERIC Educational Resources Information Center

    Dimmel, Justin K.; Herbst, Patricio G.

    2015-01-01

    Geometry diagrams use the visual features of specific drawn objects to convey meaning about generic mathematical entities. We examine the semiotic structure of these visual features in two parts. One, we conduct a semiotic inquiry to conceptualize geometry diagrams as mathematical texts that comprise choices from different semiotic systems. Two,…

  17. Fishbone Diagrams: Organize Reading Content with a "Bare Bones" Strategy

    ERIC Educational Resources Information Center

    Clary, Renee; Wandersee, James

    2010-01-01

    Fishbone diagrams, also known as Ishikawa diagrams or cause-and-effect diagrams, are one of the many problem-solving tools created by Dr. Kaoru Ishikawa, a University of Tokyo professor. Part of the brilliance of Ishikawa's idea resides in the simplicity and practicality of the diagram's basic model--a fish's skeleton. This article describes how…

  18. 49 CFR 1152.10 - System diagram map.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 49 Transportation 8 2010-10-01 2010-10-01 false System diagram map. 1152.10 Section 1152.10... TRANSPORTATION UNDER 49 U.S.C. 10903 System Diagram § 1152.10 System diagram map. (a) Each carrier shall prepare a diagram of its rail system on a map, designating all lines in its system by the...

  19. The Use of Computational Diagrams and Nomograms in Higher Education.

    ERIC Educational Resources Information Center

    Brandenburg, Richard K.; Simpson, William A.

    1984-01-01

    The use of computational diagrams and nomographs for the calculations that frequently occur in college administration is examined. Steps in constructing a nomograph and a four-dimensional computational diagram are detailed, and uses of three- and four-dimensional diagrams are covered. Diagrams and nomographs are useful in the following cases: (1)…

  20. 49 CFR 1152.10 - System diagram map.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 49 Transportation 8 2012-10-01 2012-10-01 false System diagram map. 1152.10 Section 1152.10... TRANSPORTATION UNDER 49 U.S.C. 10903 System Diagram § 1152.10 System diagram map. (a) Each carrier shall prepare a diagram of its rail system on a map, designating all lines in its system by the...

  1. 49 CFR 1152.10 - System diagram map.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 49 Transportation 8 2014-10-01 2014-10-01 false System diagram map. 1152.10 Section 1152.10... TRANSPORTATION UNDER 49 U.S.C. 10903 System Diagram § 1152.10 System diagram map. (a) Each carrier shall prepare a diagram of its rail system on a map, designating all lines in its system by the...

  2. 49 CFR 1152.10 - System diagram map.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 49 Transportation 8 2011-10-01 2011-10-01 false System diagram map. 1152.10 Section 1152.10... TRANSPORTATION UNDER 49 U.S.C. 10903 System Diagram § 1152.10 System diagram map. (a) Each carrier shall prepare a diagram of its rail system on a map, designating all lines in its system by the...

  3. 49 CFR 1152.10 - System diagram map.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 49 Transportation 8 2013-10-01 2013-10-01 false System diagram map. 1152.10 Section 1152.10... TRANSPORTATION UNDER 49 U.S.C. 10903 System Diagram § 1152.10 System diagram map. (a) Each carrier shall prepare a diagram of its rail system on a map, designating all lines in its system by the...

  4. Computationally useful bridge diagram series. II. Diagrams in h-bonds

    NASA Astrophysics Data System (ADS)

    Perkyns, John S.; Dyer, Kippi M.; Pettitt, B. Montgomery

    2002-06-01

    Equations for calculating accurate 4-point and 5-point bridge diagrams in terms of h-bonds have been presented and solved for various phase points of the Lennard-Jones fluid. A method of finding a self-consistent solution for the bridge function and the radial distribution function is demonstrated. The significance of this result over bridge diagrams expressed as f-bonds, in terms of its applicability to charged and dipolar models is discussed. Two very simple phenomenological bridge diagram forms for the bridge function for this model are examined and found to give results almost as accurate and in some cases more accurate than previous forms in the literature. This work represents the first use of directly calculated 5-point bridge diagrams in terms of h-bonds, and the many extra orders of f-bond diagrams which they include, in an integral equation result.

  5. Computationally Useful Bridge Diagram Series. II. Diagrams in H-Bonds

    SciTech Connect

    Perkyns, John S.; Dyer, Kippi M.; Pettitt, Bernard M.

    2002-06-01

    Equations for calculating accurate 4-point and 5-point bridge diagrams in terms of h-bonds have been presented and solved for various phase points of the Lennard-Jones fluid. A method of finding a self-consistent solution for the bridge function and the radial distribution function is demonstrated. The significance of this result over bridge diagrams expressed as f-bonds, in terms of its applicability to charged and dipolar models is discussed. Two very simple phenomenological bridge diagram forms for the bridge function for this model are examined and found to give results almost as accurate and in some cases more accurate than previous forms in the literature. This work represents the first use of directly calculated 5-point bridge diagrams in terms of h-bonds, and the many extra orders of f-bond diagrams which they include, in an integral equation result.

  6. A new method for diagramming pacemaker electrocardiograms.

    PubMed

    Hesselson, A B; Parsonnet, V

    1994-08-01

    Advancements in technology have made paced ECG interpretation increasingly difficult. A new method for depicting the complex pacemaker/heart interactions that eliminates the extensive use of symbols and repetitious use of refractory period and rate limit information of previous methods has been devised. The method uses a framework of parallel horizontal lines drawn on grid paper underneath the ECG. The lines are spaced apart by the actual programmed values (lower rate, AV, VA intervals) of the pacemaker in question. This framework allows the simultaneous use of the horizontal and vertical directions for the diagram of pacemaker timing intervals. Also, a single representation of refractory periods, upper rate intervals, and other variables can be labeled vertically and extrapolated horizontally across the entire diagram. Single chamber, dual chamber, and rate-modulated ECGs are readily represented. The diagram is easily plotted on standard ECG paper and flexible enough to represent complex ECGs. PMID:7526348

  7. The renormalon diagram in gauge theories on

    NASA Astrophysics Data System (ADS)

    Anber, Mohamed M.; Sulejmanpasic, Tin

    2015-01-01

    We analyze the renormalon diagram of gauge theories on . In particular, we perform exact one loop calculations for the vacuum polarization in QCD with adjoint matter and observe that all infrared logarithms, as functions of the external momentum, cancel between the vacuum part and finite volume part, which eliminates the IR renormalon problem. We argue that the singularities in the Borel plane, arising from the topological neutral bions, are not associated with the renormalon diagram, but with the proliferation of the Feynman diagrams. As a byproduct, we obtain, for the first time, an exact one-loop result of the vacuum polarization which can be adapted to the case of thermal compactification of QCD.

  8. Phase diagram of a truncated tetrahedral model.

    PubMed

    Krcmar, Roman; Gendiar, Andrej; Nishino, Tomotoshi

    2016-08-01

    Phase diagram of a discrete counterpart of the classical Heisenberg model, the truncated tetrahedral model, is analyzed on the square lattice, when the interaction is ferromagnetic. Each spin is represented by a unit vector that can point to one of the 12 vertices of the truncated tetrahedron, which is a continuous interpolation between the tetrahedron and the octahedron. Phase diagram of the model is determined by means of the statistical analog of the entanglement entropy, which is numerically calculated by the corner transfer matrix renormalization group method. The obtained phase diagram consists of four different phases, which are separated by five transition lines. In the parameter region, where the octahedral anisotropy is dominant, a weak first-order phase transition is observed. PMID:27627273

  9. The Butterfly diagram leopard skin pattern

    NASA Astrophysics Data System (ADS)

    Ternullo, Maurizio

    2011-08-01

    A time-latitude diagram where spotgroups are given proportional relevance to their area is presented. The diagram reveals that the spotted area distribution is higly dishomogeneous, most of it being concentrated in few, small portions (``knots'') of the Butterfly Diagram; because of this structure, the BD may be properly described as a cluster of knots. The description, assuming that spots scatter around the ``spot mean latitude'' steadily drifting equatorward, is challenged. Indeed, spots cluster around at as many latitudes as knots; a knot may appear at either lower or higher latitudes than previous ones, in a seemingly random way; accordingly, the spot mean latitude abruptly drifts equatorward or even poleward at any knot activation, in spite of any smoothing procedure. Preliminary analyses suggest that the activity splits, in any hemisphere, into two or more distinct ``activity waves'', drifting equatorward at a rate higher than the spot zone as a whole.

  10. A pseudo-haptic knot diagram interface

    NASA Astrophysics Data System (ADS)

    Zhang, Hui; Weng, Jianguang; Hanson, Andrew J.

    2011-01-01

    To make progress in understanding knot theory, we will need to interact with the projected representations of mathematical knots which are of course continuous in 3D but significantly interrupted in the projective images. One way to achieve such a goal would be to design an interactive system that allows us to sketch 2D knot diagrams by taking advantage of a collision-sensing controller and explore their underlying smooth structures through a continuous motion. Recent advances of interaction techniques have been made that allow progress to be made in this direction. Pseudo-haptics that simulates haptic effects using pure visual feedback can be used to develop such an interactive system. This paper outlines one such pseudo-haptic knot diagram interface. Our interface derives from the familiar pencil-and-paper process of drawing 2D knot diagrams and provides haptic-like sensations to facilitate the creation and exploration of knot diagrams. A centerpiece of the interaction model simulates a "physically" reactive mouse cursor, which is exploited to resolve the apparent conflict between the continuous structure of the actual smooth knot and the visual discontinuities in the knot diagram representation. Another value in exploiting pseudo-haptics is that an acceleration (or deceleration) of the mouse cursor (or surface locator) can be used to indicate the slope of the curve (or surface) of whom the projective image is being explored. By exploiting these additional visual cues, we proceed to a full-featured extension to a pseudo-haptic 4D visualization system that simulates the continuous navigation on 4D objects and allows us to sense the bumps and holes in the fourth dimension. Preliminary tests of the software show that main features of the interface overcome some expected perceptual limitations in our interaction with 2D knot diagrams of 3D knots and 3D projective images of 4D mathematical objects.

  11. Using UMLS to map from a library to a clinical classification: Improving the functionality of a digital library.

    PubMed

    Robinson, Judas; de Lusignan, Simon; Kostkova, Patty; Madge, Bruce

    2006-01-01

    The Metathesaurus of the Unified Medical Language System (UMLS) offers the possibility of mapping between various medical vocabularies. The Primary Care Electronic Library (PCEL) contains a database of over six thousand Medical Subject Headings (MeSH terms) describing the resources of the electronic library. We were interested to know if it was possible to map from MeSH to the Systemized Nomenclature of Medicine Clinical Terms (SNOMED CT). Such a mapping would aid healthcare professionals to retrieve relevant data from our digital library as it would enable links between clinical systems and indexed material. PMID:17095807

  12. B-Fe-U Phase Diagram

    NASA Astrophysics Data System (ADS)

    Dias, Marta; Carvalho, Patrícia Almeida; Mardolcar, Umesh Vinaica; Tougait, Olivier; Noël, Henri; Gonçalves, António Pereira

    2014-04-01

    The liquidus projection of the U-rich corner of the B-Fe-U phase diagram is proposed based on X-ray powder diffraction measurements, differential thermal analysis, and scanning electron microscopy observations complemented with energy- and wavelength-dispersive X-ray spectroscopies. Two ternary reactions in this U-rich region were observed and their approximate temperatures were established. In addition, an overview of the complete phase diagram is given, including the liquidus projection; isothermal sections at 1053 K, 1223 K, and 1373 K (780 °C, 950 °C, and 1100 °C); and a U:(Fe,B) = 1:5 isopleth.

  13. Minkowski diagram in relativity and holography.

    PubMed

    Abramson, N

    1988-05-01

    Now that ultrashort laser pulses can be used in holography, the temporal and spatial resolution approach the same order of magnitude. In that case the limited speed of light sometimes causes large measuring errors if correction methods are not introduced. Therefore, we want to revive the Minkowski diagram, which was invented in 1908 to visualize relativistic relations between time and space. We show how this diagram in a modified form can be used to derive both the static holodiagram, used for conventional holography, including ultrahigh-speed recordings of wavefronts, and a dynamic holodiagram used for studying the apparent distortions of objects recorded at relativistic speeds. PMID:20531662

  14. Microwave window breakdown experiments and simulations on the UM/L-3 relativistic magnetron.

    PubMed

    Hoff, B W; Mardahl, P J; Gilgenbach, R M; Haworth, M D; French, D M; Lau, Y Y; Franzi, M

    2009-09-01

    Experiments have been performed on the UM/L-3 (6-vane, L-band) relativistic magnetron to test a new microwave window configuration designed to limit vacuum side breakdown. In the baseline case, acrylic microwave windows were mounted between three of the waveguide coupling cavities in the anode block vacuum housing and the output waveguides. Each of the six 3 cm deep coupling cavities is separated from its corresponding anode cavity by a 1.75 cm wide aperture. In the baseline case, vacuum side window breakdown was observed to initiate at single waveguide output powers close to 20 MW. In the new window configuration, three Air Force Research Laboratory-designed, vacuum-rated directional coupler waveguide segments were mounted between the coupling cavities and the microwave windows. The inclusion of the vacuum side power couplers moved the microwave windows an additional 30 cm away from the anode apertures. Additionally, the Lucite microwave windows were replaced with polycarbonate windows and the microwave window mounts were redesigned to better maintain waveguide continuity in the region around the microwave windows. No vacuum side window breakdown was observed in the new window configuration at single waveguide output powers of 120+MW (a factor of 3 increase in measured microwave pulse duration and factor of 3 increase in measured peak power over the baseline case). Simulations were performed to investigate likely causes for the window breakdown in the original configuration. Results from these simulations have shown that in the original configuration, at typical operating voltage and magnetic field ranges, electrons emitted from the anode block microwave apertures strike the windows with a mean kinetic energy of 33 keV with a standard deviation of 14 keV. Calculations performed using electron impact angle and energy data predict a first generation secondary electron yield of 65% of the primary electron population. The effects of the primary aperture electron

  15. Lessons learned from a pilot implementation of the UMLS information sources map.

    PubMed Central

    Miller, P L; Frawley, S J; Wright, L; Roderer, N K; Powsner, S M

    1995-01-01

    OBJECTIVE: To explore the software design issues involved in implementing an operational information sources map (ISM) knowledge base (KB) and system of navigational tools that can help medical users access network-based information sources relevant to a biomedical question. DESIGN: A pilot biomedical ISM KB and associated client-server software (ISM/Explorer) have been developed to help students, clinicians, researchers, and staff access network-based information sources, as part of the National Library of Medicine's (NLM) multi-institutional Unified Medical Language System (UMLS) project. The system allows the user to specify and constrain a search for a biomedical question of interest. The system then returns a list of sources matching the search. At this point the user may request 1) further information about a source, 2) that the list of sources be regrouped by different criteria to allow the user to get a better overall appreciation of the set of retrieved sources as a whole, or 3) automatic connection to a source. RESULTS: The pilot system operates in client-server mode and currently contains coded information for 121 sources. It is in routine use from approximately 40 workstations at the Yale School of Medicine. The lessons that have been learned are that: 1) it is important to make access to different versions of a source as seamless as possible, 2) achieving seamless, cross-platform access to heterogeneous sources is difficult, 3) significant differences exist between coding the subject content of an electronic information resource versus that of an article or a book, 4) customizing the ISM to multiple institutions entails significant complexities, and 5) there are many design trade-offs between specifying searches and viewing sets of retrieved sources that must be taken into consideration. CONCLUSION: An ISM KB and navigational tools have been constructed. In the process, much has been learned about the complexities of development and evaluation in this

  16. Stability diagrams for a rigid gyrostat in a circular orbit

    NASA Astrophysics Data System (ADS)

    Hughes, P. C.; Golla, D. F.

    1984-05-01

    The dynamics of a rigid gyrostat travelling in a circular orbit are reviewed. The two torques to be balanced are the gyroscopic torque associated with the once per orbit precession of the in plane angular momentum vector, and the gravitational torque that results from the principal inertial axes not being aligned with the orbiting axes. Different methods of balancing these two torques lead to different classes of relative equilibria, viz., the cylindrical case, the conical case, the hyperbolic case, and the general case. The principal contribution is to present a large number of stability diagrams for the many different cases and subcases that arise. A large number of equilbria are, in fact, unstable. However, as shown here, they can usually be stabilized by adding a momentum wheel aligned with the pitch axis.

  17. On phase diagrams of magnetic reconnection

    SciTech Connect

    Cassak, P. A.; Drake, J. F.

    2013-06-15

    Recently, “phase diagrams” of magnetic reconnection were developed to graphically organize the present knowledge of what type, or phase, of reconnection is dominant in systems with given characteristic plasma parameters. Here, a number of considerations that require caution in using the diagrams are pointed out. First, two known properties of reconnection are omitted from the diagrams: the history dependence of reconnection and the absence of reconnection for small Lundquist number. Second, the phase diagrams mask a number of features. For one, the predicted transition to Hall reconnection should be thought of as an upper bound on the Lundquist number, and it may happen for considerably smaller values. Second, reconnection is never “slow,” it is always “fast” in the sense that the normalized reconnection rate is always at least 0.01. This has important implications for reconnection onset models. Finally, the definition of the relevant Lundquist number is nuanced and may differ greatly from the value based on characteristic scales. These considerations are important for applications of the phase diagrams. This is demonstrated by example for solar flares, where it is argued that it is unlikely that collisional reconnection can occur in the corona.

  18. Fog Machines, Vapors, and Phase Diagrams

    ERIC Educational Resources Information Center

    Vitz, Ed

    2008-01-01

    A series of demonstrations is described that elucidate the operation of commercial fog machines by using common laboratory equipment and supplies. The formation of fogs, or "mixing clouds", is discussed in terms of the phase diagram for water and other chemical principles. The demonstrations can be adapted for presentation suitable for elementary…

  19. Spin wave Feynman diagram vertex computation package

    NASA Astrophysics Data System (ADS)

    Price, Alexander; Javernick, Philip; Datta, Trinanjan

    Spin wave theory is a well-established theoretical technique that can correctly predict the physical behavior of ordered magnetic states. However, computing the effects of an interacting spin wave theory incorporating magnons involve a laborious by hand derivation of Feynman diagram vertices. The process is tedious and time consuming. Hence, to improve productivity and have another means to check the analytical calculations, we have devised a Feynman Diagram Vertex Computation package. In this talk, we will describe our research group's effort to implement a Mathematica based symbolic Feynman diagram vertex computation package that computes spin wave vertices. Utilizing the non-commutative algebra package NCAlgebra as an add-on to Mathematica, symbolic expressions for the Feynman diagram vertices of a Heisenberg quantum antiferromagnet are obtained. Our existing code reproduces the well-known expressions of a nearest neighbor square lattice Heisenberg model. We also discuss the case of a triangular lattice Heisenberg model where non collinear terms contribute to the vertex interactions.

  20. Dynamic Tactile Diagram Simplification on Refreshable Displays

    ERIC Educational Resources Information Center

    Rastogi, Ravi; Pawluk, Dianne T. V.

    2013-01-01

    The increasing use of visual diagrams in educational and work environments, and even our daily lives, has created obstacles for individuals who are blind or visually impaired to "independently" access the information they represent. Although physical tactile pictures can be created to convey the visual information, it is typically a slow,…

  1. Fine structure of the butterfly diagram revisited

    NASA Astrophysics Data System (ADS)

    Major, Balázs

    The latitudinal time distribution of sunspots (butterfly diagram) was studied by Becker (1959) and Antalová & Gnevyshev (1985). Our goal is to revisit these studies. In the first case we check whether there is a poleward migration in sunspot activity. In the second case we confirm the results, and make more quantitative statements concerning their significance and the position of the activity peaks.

  2. NFHS Court and Field Diagram Guide.

    ERIC Educational Resources Information Center

    Gillis, John, Ed.

    This guide contains a comprehensive collection of diagrams and specifications of playing fields and courts used in interscholastic and recreational sports, along with information on how to set up various formats of tournament drawings, how to compute golf handicaps, and how to convert metric-to-English distances. Lists are provided of national…

  3. Journeys on the H-R diagram

    SciTech Connect

    Kaler, J.B.

    1988-05-01

    The evolution of various types of stars along the H-R diagram is discussed. Star birth and youth is addressed, and the events that occur due to core contraction, shell burning, and double-shell burning are described. The evolutionary courses of planetary nebulae, white dwarfs, and supernovas are examined.

  4. Complexities of One-Component Phase Diagrams

    ERIC Educational Resources Information Center

    Ciccioli, Andrea; Glasser, Leslie

    2011-01-01

    For most materials, the solid at and near the triple-point temperature is denser than the liquid with which it is in equilibrium. However, for water and certain other materials, the densities of the phases are reversed, with the solid being less dense. The profound consequences for the appearance of the "pVT" diagram of one-component materials…

  5. Constructing Causal Diagrams to Learn Deliberation

    ERIC Educational Resources Information Center

    Easterday, Matthew W.; Aleven, Vincent; Scheines, Richard; Carver, Sharon M.

    2009-01-01

    Policy problems like "What should we do about global warming?" are ill-defined in large part because we do not agree on a system to represent them the way we agree Algebra problems should be represented by equations. As a first step toward building a policy deliberation tutor, we investigated: (a) whether causal diagrams help students learn to…

  6. Image Attributes: A Study of Scientific Diagrams.

    ERIC Educational Resources Information Center

    Brunskill, Jeff; Jorgensen, Corinne

    2002-01-01

    Discusses advancements in imaging technology and increased user access to digital images, as well as efforts to develop adequate indexing and retrieval methods for image databases. Describes preliminary results of a study of undergraduates that explored the attributes naive subjects use to describe scientific diagrams. (Author/LRW)

  7. Phase diagram of spiking neural networks

    PubMed Central

    Seyed-allaei, Hamed

    2015-01-01

    In computer simulations of spiking neural networks, often it is assumed that every two neurons of the network are connected by a probability of 2%, 20% of neurons are inhibitory and 80% are excitatory. These common values are based on experiments, observations, and trials and errors, but here, I take a different perspective, inspired by evolution, I systematically simulate many networks, each with a different set of parameters, and then I try to figure out what makes the common values desirable. I stimulate networks with pulses and then measure their: dynamic range, dominant frequency of population activities, total duration of activities, maximum rate of population and the occurrence time of maximum rate. The results are organized in phase diagram. This phase diagram gives an insight into the space of parameters – excitatory to inhibitory ratio, sparseness of connections and synaptic weights. This phase diagram can be used to decide the parameters of a model. The phase diagrams show that networks which are configured according to the common values, have a good dynamic range in response to an impulse and their dynamic range is robust in respect to synaptic weights, and for some synaptic weights they oscillates in α or β frequencies, independent of external stimuli. PMID:25788885

  8. Computer-Generated Diagrams for the Classroom.

    ERIC Educational Resources Information Center

    Carle, Mark A.; Greenslade, Thomas B., Jr.

    1986-01-01

    Describes 10 computer programs used to draw diagrams usually drawn on chalkboards, such as addition of three vectors, vector components, range of a projectile, lissajous figures, beats, isotherms, Snell's law, waves passing through a lens, magnetic field due to Helmholtz coils, and three curves. Several programming tips are included. (JN)

  9. The Binary Temperature-Composition Phase Diagram

    ERIC Educational Resources Information Center

    Sanders, Philip C.; Reeves, James H.; Messina, Michael

    2006-01-01

    The equations for the liquid and gas lines in the binary temperature-composition phase diagram are derived by approximating that delta(H)[subscript vap] of the two liquids are equal. It is shown that within this approximation, the resulting equations are not too difficult to present in an undergraduate physical chemistry lecture.

  10. Constraints Modeling in FRBR Data Model Using OCL

    NASA Astrophysics Data System (ADS)

    Rudić, Gordana

    2011-09-01

    Transformation of the conceptual FRBR data model to the class diagram in UML 2.0 notation is given. The class diagram is formed using MagicDraw CASE tool. The paper presents a class diagram for the first group of FRBR entities ie. classes (the product of intellectual or artistic endeavour). It is demonstrated how to model constraints over relationships between classes in FRBR object data model using OCL 2.0.

  11. Impersonal parameters from Hertzsprung-Russell diagrams

    NASA Astrophysics Data System (ADS)

    Wilson, R. E.; Hurley, Jarrod R.

    2003-10-01

    An objective process for estimation of star cluster parameters from Hertzsprung-Russell (HR) diagrams is introduced, with direct inclusion of multiple stars, a least-squares fitting criterion, and standard error estimates. No role is played by conventional isochrones. Instead the quantity compared between observation and theory is the density of points (areal ) as it varies over the diagram. With as the effective observable quantity, standard parameter adjustment theory can be brought to bear on HR diagram analysis. Here we use the method of differential corrections with a least-squares fitting criterion, but any of the many known fitting methods should be applicable to comparison of observed and theoretical distributions. Diverse numerical schemes were developed to make the overall algorithm workable, including two that improve differentiability of by rendering point distributions effectively equivalent to continuous distributions in certain respects. Statistics of distributions are handled not via Monte Carlo methods but by the Functional Statistics Algorithm (hereafter FSA), a statistical algorithm that has been developed for HR diagram fitting but should serve as an alternative to Monte Carlo in many other applications. FSA accomplishes the aims of Monte Carlo with orders of magnitude less computation. Analysis of luminosity functions is included within the HR diagram algorithm as a special case. Areal density analysis of HR diagrams is acceptably fast because we handle stellar evolution via approximation functions, whose output also is more precisely differentiable than that of a full stellar evolution program. Evolution by approximation functions is roughly a million times as fast as full evolution and has virtually no numerical noise. The algorithmic ideas that lead to objective solutions can be applied to many kinds of HR diagram analysis that are now done subjectively. The present solution program is limited by speed considerations to use of one evolution

  12. Galaxy emission line classification using three-dimensional line ratio diagrams

    SciTech Connect

    Vogt, Frédéric P. A.; Dopita, Michael A.; Kewley, Lisa J.; Sutherland, Ralph S.; Scharwächter, Julia; Basurah, Hassan M.; Ali, Alaa; Amer, Morsi A.

    2014-10-01

    Two-dimensional (2D) line ratio diagnostic diagrams have become a key tool in understanding the excitation mechanisms of galaxies. The curves used to separate the different regions—H II-like or excited by an active galactic nucleus (AGN)—have been refined over time but the core technique has not evolved significantly. However, the classification of galaxies based on their emission line ratios really is a multi-dimensional problem. Here we exploit recent software developments to explore the potential of three-dimensional (3D) line ratio diagnostic diagrams. We introduce the ZQE diagrams, which are a specific set of 3D diagrams that separate the oxygen abundance and the ionization parameter of H II region-like spectra and also enable us to probe the excitation mechanism of the gas. By examining these new 3D spaces interactively, we define the ZE diagnostics, a new set of 2D diagnostics that can provide the metallicity of objects excited by hot young stars and that cleanly separate H II region-like objects from the different classes of AGNs. We show that these ZE diagnostics are consistent with the key log [N II]/Hα versus log [O III]/Hβ diagnostic currently used by the community. They also have the advantage of attaching a probability that a given object belongs to one class or the other. Finally, we discuss briefly why ZQE diagrams can provide a new way to differentiate and study the different classes of AGNs in anticipation of a dedicated follow-up study.

  13. The organization of intrinsic computation: Complexity-entropy diagrams and the diversity of natural information processing

    NASA Astrophysics Data System (ADS)

    Feldman, David P.; McTague, Carl S.; Crutchfield, James P.

    2008-12-01

    Intrinsic computation refers to how dynamical systems store, structure, and transform historical and spatial information. By graphing a measure of structural complexity against a measure of randomness, complexity-entropy diagrams display the different kinds of intrinsic computation across an entire class of systems. Here, we use complexity-entropy diagrams to analyze intrinsic computation in a broad array of deterministic nonlinear and linear stochastic processes, including maps of the interval, cellular automata, and Ising spin systems in one and two dimensions, Markov chains, and probabilistic minimal finite-state machines. Since complexity-entropy diagrams are a function only of observed configurations, they can be used to compare systems without reference to system coordinates or parameters. It has been known for some time that in special cases complexity-entropy diagrams reveal that high degrees of information processing are associated with phase transitions in the underlying process space, the so-called "edge of chaos." Generally, though, complexity-entropy diagrams differ substantially in character, demonstrating a genuine diversity of distinct kinds of intrinsic computation.

  14. The organization of intrinsic computation: complexity-entropy diagrams and the diversity of natural information processing.

    PubMed

    Feldman, David P; McTague, Carl S; Crutchfield, James P

    2008-12-01

    Intrinsic computation refers to how dynamical systems store, structure, and transform historical and spatial information. By graphing a measure of structural complexity against a measure of randomness, complexity-entropy diagrams display the different kinds of intrinsic computation across an entire class of systems. Here, we use complexity-entropy diagrams to analyze intrinsic computation in a broad array of deterministic nonlinear and linear stochastic processes, including maps of the interval, cellular automata, and Ising spin systems in one and two dimensions, Markov chains, and probabilistic minimal finite-state machines. Since complexity-entropy diagrams are a function only of observed configurations, they can be used to compare systems without reference to system coordinates or parameters. It has been known for some time that in special cases complexity-entropy diagrams reveal that high degrees of information processing are associated with phase transitions in the underlying process space, the so-called "edge of chaos." Generally, though, complexity-entropy diagrams differ substantially in character, demonstrating a genuine diversity of distinct kinds of intrinsic computation. PMID:19123616

  15. Five Year Results of US Intergroup/RTOG 9704 With Postoperative CA 19-9 {<=}90 U/mL and Comparison to the CONKO-001 Trial

    SciTech Connect

    Berger, Adam C.; Winter, Kathryn; Hoffman, John P.; Regine, William F.; Abrams, Ross A.; Safran, Howard; Benson, Alan B.; MacDonald, John; Willett, Christopher G.

    2012-11-01

    Purpose: Radiation Therapy Oncology Group (RTOG) trial 9704 was the largest randomized trial to use adjuvant chemoradiation therapy for patients with pancreatic cancer. This report analyzes 5-year survival by serum level of tumor marker CA 19-9 of {<=}90 vs >90 U/mL and compares results to the those of the CONKO-001 trial. Methods and Materials: CA 19-9 expression was analyzed as a dichotomized variable ({<=}90 vs >90 U/mL). Cox proportional hazard models were used to identify the impact of the CA 19-9 value on overall survival (OS). Actuarial estimates of OS were calculated using the Kaplan-Meier method. Results: Both univariate (hazard ratio [HR] = 3.2; 95% confidence interval [CI], 2.3-4.3, P<.0001) and multivariate (HR = 3.1; 95% CI, 2.2-4.2, P<.0001) analyses demonstrated a statistically significant decrease in OS for CA 19-9 serum level of {>=}90 U/mL. For patients in the gemcitabine (Gem) treatment arm with CA 19-9 <90 U/mL, median survival was 21 months. For patients with CA 19-9 {>=}90 U/mL, this number dropped to 10 months. In patients with pancreatic head tumors in the Gem treatment arm with RT quality assurance per protocol and CA 19-9 of <90 U/mL, median survival and 5-year rate were 24 months and 34%. In comparison, the median survival and 5-year OS rate for patients in the Gem arm of the CONKO trial were 22 months and 21%. Conclusions: This analysis demonstrates that patients with postresection CA 19-9 values {>=}90 U/mL had a significantly worse survival. Patients with pancreatic head tumors treated with Gem with CA 19-9 serum level of <90 U/mL and per protocol RT had favorable survival compared to that seen in the CONKO trial. CA 19-9 is a stratification factor for the current RTOG adjuvant pancreas trial (0848).

  16. Phase diagram of the hard-core Yukawa fluid within the integral equation method.

    PubMed

    El Mendoub, E B; Wax, J-F; Jakse, N

    2006-11-01

    In this study, the integral equation method proposed recently by Sarkisov [J. Chem. Phys. 114, 9496 (2001).], which has proved accurate for continuous potentials, is extended successfully to the hard sphere potential plus an attractive Yukawa tail. By comparing the results of thermodynamic properties, including the liquid-vapor phase diagram, with available simulation data, it is found that this method remains reliable for this class of models of interaction often used in colloid science. PMID:17279956

  17. Band diagram of strained graphene nanoribbons

    NASA Astrophysics Data System (ADS)

    Prabhakar, Sanjay; Melnik, Roderick; Bonilla, Luis

    2016-04-01

    The influence of ripple waves on the band diagram of zigzag strained graphene nanoribbons (GNRs) is analyzed by utilizing the finite element method. Such waves have their origin in electromechanical effects. With a novel model, we demonstrate that electron-hole band diagrams of GNRs are highly influenced (i.e. level crossing of the bands are possible) by two combined effects: pseudo-magnetic fields originating from electroelasticity theory and external magnetic fields. In particular, we show that the level crossing point can be observed at large external magnetic fields (B ≈ 100T ) in strained GNRs, when the externally applied tensile edge stress is on the order of -100 eV/nm and the amplitude of the out-of-plane ripple waves is on the order of 1nm.

  18. Ring-Diagram Analysis: Status and Perspectives

    NASA Astrophysics Data System (ADS)

    Hill, F.

    Ring diagram analysis is now more than a decade old. While the details of the technique are still evolving, the application of the method to MDI, TON, Mt. Wilson, HLH, and GONG data is providing intriguing results. Thanks to the work of many people, it is now becoming possible to observationally infer the complicated dynamics in the outer 15 Mm of the solar convection zone, investigate the depth dependence of meridional flow, and get a closer look at zonal jet-stream structures in the mid-latitudes. We may soon be able to similarly investigate the spatio-temporal distribution of scalar fields. As ring diagrams and other local helioseismology methods such as time-distance and acoustic imaging continue to mature, the comparison of results from different techniques on common data sets will provide a useful reality check.

  19. Phase diagram of a single lane roundabout

    NASA Astrophysics Data System (ADS)

    Echab, H.; Lakouari, N.; Ez-Zahraouy, H.; Benyoussef, A.

    2016-03-01

    Using the cellular automata model, we numerically study the traffic dynamic in a single lane roundabout system of four entry/exit points. The boundaries are controlled by the injecting rates α1, α2 and the extracting rate β. Both the system with and without Splitter Islands of width Lsp are considered. The phase diagram in the (α1 , β) space and its variation with the roundabout size, Pagg (i.e. the probability of aggressive entry), and Pexit (i.e. the probability of preferential exit) are constructed. The results show that the phase diagram in both cases consists of three phases: free flow, congested and jammed. However, as Lsp increases the free flow phase enlarges while the congested and jammed ones shrink. On the other hand, the short sized roundabout shows better performance in the free flow phase while the large one is more optimal in the congested phase. The density profiles are also investigated.

  20. Prediction of boron carbon nitrogen phase diagram

    NASA Astrophysics Data System (ADS)

    Yao, Sanxi; Zhang, Hantao; Widom, Michael

    We studied the phase diagram of boron, carbon and nitrogen, including the boron-carbon and boron-nitrogen binaries and the boron-carbon-nitrogen ternary. Based on the idea of electron counting and using a technique of mixing similar primitive cells, we constructed many ''electron precise'' structures. First principles calculation is performed on these structures, with either zero or high pressures. For the BN binary, our calculation confirms that a rhmobohedral phase can be stablized at high pressure, consistent with some experimental results. For the BCN ternary, a new ground state structure is discovered and an Ising-like phase transition is suggested. Moreover, we modeled BCN ternary phase diagram and show continuous solubility from boron carbide to the boron subnitride phase.

  1. Penguin diagrams for improved staggered fermions

    SciTech Connect

    Lee, Weonjong

    2005-01-01

    We calculate, at the one-loop level, penguin diagrams for improved staggered fermion operators constructed using various fat links. The main result is that diagonal mixing coefficients with penguin operators are identical between the unimproved operators and the improved operators using such fat links as Fat7, Fat7+Lepage, Fat7, HYP (I) and HYP (II). In addition, it turns out that the off-diagonal mixing vanishes for those constructed using fat links of Fat7, Fat7 and HYP (II). This is a consequence of the fact that the improvement by various fat links changes only the mixing with higher dimension operators and off-diagonal operators. The results of this paper, combined with those for current-current diagrams, provide complete matching at the one-loop level with all corrections of O(g{sup 2}) included.

  2. Direct Measurement of the Fluid Phase Diagram.

    PubMed

    Bao, Bo; Riordon, Jason; Xu, Yi; Li, Huawei; Sinton, David

    2016-07-19

    The thermodynamic phase of a fluid (liquid, vapor or supercritical) is fundamental to all chemical processes, and the critical point is particularly important for supercritical chemical extraction. Conventional phase measurement methods require hours to obtain a single datum on the pressure and temperature diagram. Here, we present the direct measurement of the full pressure-temperature phase diagram, with 10 000 microwells. Orthogonal, linear, pressure and temperature gradients are obtained with 100 parallel microchannels (spanning the pressure range), each with 100 microwells (spanning the temperature range). The phase-mapping approach is demonstrated with both a pure substance (CO2) and a mixture (95% CO2 + 5% N2). Liquid, vapor, and supercritical regions are clearly differentiated, and the critical pressure is measured at 1.2% error with respect to the NIST standard. This approach provides over 100-fold improvement in measurement speed over conventional methods. PMID:27331613

  3. Krajewski diagrams and the standard model

    SciTech Connect

    Stephan, Christoph A.

    2009-04-15

    This paper provides a complete list of Krajewski diagrams representing the standard model of particle physics. We will give the possible representations of the algebra and the anomaly free lifts which provide the representation of the standard model gauge group on the fermionic Hilbert space. The algebra representations following from the Krajewski diagrams are not complete in the sense that the corresponding spectral triples do not necessarily obey to the axiom of Poincare duality. This defect may be repaired by adding new particles to the model, i.e., by building models beyond the standard model. The aim of this list of finite spectral triples (up to Poincare duality) is therefore to provide a basis for model building beyond the standard model.

  4. MHV diagrams in momentum twistor space

    NASA Astrophysics Data System (ADS)

    Bullimore, Mathew; Mason, Lionel; Skinner, David

    2010-12-01

    We show that there are remarkable simplifications when the MHV diagram formalism for mathcal{N} = 4 super Yang-Mills is reformulated in momentum twistor space. The vertices are replaced by unity while each propagator becomes a dual superconformal `R-invariant' whose arguments may be read off from the diagram, and include an arbitrarily chosen reference twistor. The momentum twistor MHV rules generate a formula for the full, all-loop planar integrand for the super Yang-Mills S-matrix that is manifestly dual superconformally invariant up to the choice of a reference twistor. We give a general proof of this reformulation and illustrate its use by computing the momentum twistor NMHV and N2MHV tree amplitudes and the integrands of the MHV and NMHV 1-loop and the MHV 2-loop planar amplitudes.

  5. Persistence diagrams of cortical surface data.

    PubMed

    Chung, Moo K; Bubenik, Peter; Kim, Peter T

    2009-01-01

    We present a novel framework for characterizing signals in images using techniques from computational algebraic topology. This technique is general enough for dealing with noisy multivariate data including geometric noise. The main tool is persistent homology which can be encoded in persistence diagrams. These diagrams visually show how the number of connected components of the sublevel sets of the signal changes. The use of local critical values of a function differs from the usual statistical parametric mapping framework, which mainly uses the mean signal in quantifying imaging data. Our proposed method uses all the local critical values in characterizing the signal and by doing so offers a completely new data reduction and analysis framework for quantifying the signal. As an illustration, we apply this method to a 1D simulated signal and 2D cortical thickness data. In case of the latter, extra homological structures are evident in an control group over the autistic group. PMID:19694279

  6. Extracting parameters from colour-magnitude diagrams

    NASA Astrophysics Data System (ADS)

    Bonatto, C.; Campos, F.; Kepler, S. O.; Bica, E.

    2015-07-01

    We present a simple approach for obtaining robust values of astrophysical parameters from the observed colour-magnitude diagrams (CMDs) of star clusters. The basic inputs are the Hess diagram built with the photometric measurements of a star cluster and a set of isochrones covering wide ranges of age and metallicity. In short, each isochrone is shifted in apparent distance modulus and colour excess until it crosses over the maximum possible Hess density. Repeating this step for all available isochrones leads to the construction of the solution map, in which the optimum values of age and metallicity - as well as foreground/background reddening and distance from the Sun - can be searched for. Controlled tests with simulated CMDs show that the approach is efficient in recovering the input values. We apply the approach to the open clusters M 67, NGC 6791 and NGC 2635, which are characterized by different ages, metallicities and distances from the Sun.

  7. Phase Coexistence in a Dynamic Phase Diagram.

    PubMed

    Gentile, Luigi; Coppola, Luigi; Balog, Sandor; Mortensen, Kell; Ranieri, Giuseppe A; Olsson, Ulf

    2015-08-01

    Metastability and phase coexistence are important concepts in colloidal science. Typically, the phase diagram of colloidal systems is considered at the equilibrium without the presence of an external field. However, several studies have reported phase transition under mechanical deformation. The reason behind phase coexistence under shear flow is not fully understood. Here, multilamellar vesicle (MLV)-to-sponge (L3 ) and MLV-to-Lα transitions upon increasing temperature are detected using flow small-angle neutron scattering techniques. Coexistence of Lα and MLV phases at 40 °C under shear flow is detected by using flow NMR spectroscopy. The unusual rheological behavior observed by studying the lamellar phase of a non-ionic surfactant is explained using (2) H NMR and diffusion flow NMR spectroscopy with the coexistence of planar lamellar-multilamellar vesicles. Moreover, a dynamic phase diagram over a wide range of temperatures is proposed. PMID:26083451

  8. Phase diagram of superconductor-ferromagnet superlattices

    SciTech Connect

    Radovic, Z.; Dobrosavljevic-Grujic, L.

    1994-12-31

    Recent progress in the proximity effect theory of superconductor-ferromagnet superlattices is reviewed. The phase diagram calculations, transition temperature {Tc} and upper critical fields H{sub c2}, are presented. Characteristic features in {Tc} and H{sub c2}(T) dependence on layers thicknesses, including the predicted unusual oscillatory variations and new inhomogeneous superconducting state with nontrivial phase difference between neighboring superconducting layers, are discussed and compared with experimental data for V/Fe and Nb/Gd superlattices.

  9. Mixed wasted integrated program: Logic diagram

    SciTech Connect

    Mayberry, J.; Stelle, S.; O`Brien, M.; Rudin, M.; Ferguson, J.; McFee, J.

    1994-11-30

    The Mixed Waste Integrated Program Logic Diagram was developed to provide technical alternative for mixed wastes projects for the Office of Technology Development`s Mixed Waste Integrated Program (MWIP). Technical solutions in the areas of characterization, treatment, and disposal were matched to a select number of US Department of Energy (DOE) treatability groups represented by waste streams found in the Mixed Waste Inventory Report (MWIR).

  10. Colored HOMFLY polynomials of knots presented as double fat diagrams

    NASA Astrophysics Data System (ADS)

    Mironov, A.; Morozov, A.; Morozov, An.; Ramadevi, P.; Singh, Vivek Kumar

    2015-07-01

    Many knots and links in S 3 can be drawn as gluing of three manifolds with one or more four-punctured S 2 boundaries. We call these knot diagrams as double fat graphs whose invariants involve only the knowledge of the fusion and the braiding matrices of four -strand braids. Incorporating the properties of four-point conformal blocks in WZNW models, we conjecture colored HOMFLY polynomials for these double fat graphs where the color can be rectangular or non-rectangular representation. With the recent work of Gu-Jockers, the fusion matrices for the non-rectangular [21] representation, the first which involves multiplicity is known. We verify our conjecture by comparing with the [21] colored HOMFLY of many knots, obtained as closure of three braids. The conjectured form is computationally very effective leading to writing [21]-colored HOMFLY polynomials for many pretzel type knots and non-pretzel type knots. In particular, we find class of pretzel mutants which are distinguished and another class of mutants which cannot be distinguished by [21] representation. The difference between the [21]-colored HOMFLY of two mutants seems to have a general form, with A-dependence completely defined by the old conjecture due to Morton and Cromwell. In particular, we check it for an entire multi-parametric family of mutant knots evaluated using evolution method.