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Sample records for wild relative teosinte

  1. Natural variation in teosinte at the domestication locus teosinte branched1 (tb1)

    PubMed Central

    Vann, Laura; Kono, Thomas; Pyhäjärvi, Tanja

    2015-01-01

    The teosinte branched1(tb1) gene is a major QTL controlling branching differences between maize and its wild progenitor, teosinte. The insertion of a transposable element (Hopscotch) upstream of tb1 is known to enhance the gene’s expression, causing reduced tillering in maize. Observations of the maize tb1 allele in teosinte and estimates of an insertion age of the Hopscotch that predates domestication led us to investigate its prevalence and potential role in teosinte. We assessed the prevalence of the Hopscotch element across an Americas-wide sample of 837 maize and teosinte individuals using a co-dominant PCR assay. Additionally, we calculated population genetic summaries using sequence data from a subset of individuals from four teosinte populations and collected phenotypic data using seed from a single teosinte population where Hopscotch was found segregating at high frequency. Genotyping results indicate the Hopscotch element is found in a number of teosinte populations and linkage disequilibrium near tb1 does not support recent introgression from maize. Population genetic signatures are consistent with selection on the tb1 locus, revealing a potential ecological role, but a greenhouse experiment does not detect a strong association between the Hopscotch and tillering in teosinte. Our findings suggest the role of Hopscotch differs between maize and teosinte. Future work should assess tb1 expression levels in teosinte with and without the Hopscotch and more comprehensively phenotype teosinte to assess the ecological significance of the Hopscotch insertion and, more broadly, the tb1 locus in teosinte. PMID:25909039

  2. Polymorphism pattern at a miniature inverted-repeat transposable element locus downstream of the domestication gene Teosinte-branched1 in wild and domesticated pearl millet.

    PubMed

    Dussert, Y; Remigereau, M-S; Fontaine, M C; Snirc, A; Lakis, G; Stoeckel, S; Langin, T; Sarr, A; Robert, T

    2013-01-01

    Unravelling the mechanisms involved in adaptation to understand plant morphological evolution is a challenging goal. For crop species, identification of molecular causal polymorphisms involved in domestication traits is central to this issue. Pearl millet, a domesticated grass mostly found in semi-arid areas of Africa and India, is an interesting model to address this topic: the domesticated form shares common derived phenotypes with some other cereals such as a decreased ability to develop basal and axillary branches in comparison with the wild phenotype. Two recent studies have shown that the orthologue of the maize gene Teosinte-Branched1 in pearl millet (PgTb1) was probably involved in branching evolution during domestication and that a miniature inverted-repeat transposable element (MITE) of the Tuareg family was inserted in the 3' untranslated region of PgTb1. For a set of 35 wild and domesticated populations, we compared the polymorphism patterns at this MITE and at microsatellite loci. The Tuareg insertion was nearly absent in the wild populations, whereas a strong longitudinal frequency cline was observed in the domesticated populations. The geographical pattern revealed by neutral microsatellite loci clearly demonstrated that isolation by distance does not account for the existence of this cline. However, comparison of population differentiation at the microsatellite and the MITE loci and analyses of the nucleotide polymorphism pattern in the downstream region of PgTb1 did not show evidence that the cline at the MITE locus has been shaped by selection, suggesting the implication of a neutral process. Alternative hypotheses are discussed. PMID:23205613

  3. Identification of alleles conferring resistance to gray leaf spot in maize derived from its wild progenitor species teosinte (Zea mays ssp. parviglumis)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Gray Leaf Spot [(GLS), causal agent Cercospora zeae-maydis and Cercospora zeina] is an important maize disease in the United States. Current control methods for GLS include using resistant cultivars, crop rotation, chemical applications, and conventional tillage to reduce inoculum levels. Teosinte ...

  4. Gene Flow Among Different Teosinte Taxa and Into the Domesticated Maize Gene Pool

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Maize (Zea mays ssp. mays) was domesticated from one wild species ancestor, the Balsas teosinte (Zea mays ssp. parviglumis) about 9000 years ago. Higher levels of gene diversity are found in teosinte taxa compared to maize following domestication and selection bottlenecks. Diversity in maize can b...

  5. Presence of Zea luxurians (Durieu and Ascherson) Bird in Southern Brazil: Implications for the Conservation of Wild Relatives of Maize

    PubMed Central

    2015-01-01

    Records of the occurrence of wild relatives of maize in South American lowlands are unprecedented, especially in sympatric coexistence with landraces. This fact is relevant, because regions of occurrence of wild relatives of cultivated plants should be a priority for conservation, even if they do not correspond to the center of origin of the species. The aim of this study was to identify and characterize the wild relatives of maize in the Far West of Santa Catarina, southern Brazil. Therefore, phenotypic characterization was performed for five populations, based on 22 morphological traits deemed as fundamental for classifying the species of the genus Zea, and validated through the characterization of chromosomal knobs of two populations. The occurrence and distribution of teosinte populations were described through semi-structured interviews applied to a sample of 305 farmers. A total of 136 teosinte populations were identified; 75% of them occur spontaneously, 17% are cultivated populations, and 8% occur both ways, for the same farm. Populations that were characterized morphologically had trapezoidal fruits mostly, upright tassel branch (4–18), non-prominent main branch and glabrous glumes, with two protruding outer ribs and 8 inner ribs, on average. Cytogenetic analysis identified 10 pairs of homologous chromosomes (2n = 20) with 26 knobs, located in the terminal region of all chromosomes. The similarity of these results with the information reported in the literature indicates that the five populations of wild relatives of maize in this region of Santa Catarina belong to the botanical species Zea luxurians. PMID:26488577

  6. Seed dormancy in Mexican teosinte

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Seed dormancy in wild Zea species may affect fitness and relate to ecological adaptation. The primary objective of this study was to characterize the variation in seed germination of the wild species of the genus Zea that currently grow in Mexico, and to relate this variation to their ecological zon...

  7. Fertility Relationships in Maize-Teosinte Hybrids. 

    E-print Network

    Rogers, John S. (John Sinclair)

    1950-01-01

    teosinte the pollen sterility averaged as high as 66.8 percent, and examinations at meiosis I showed more irregular behavior than was found in the Florida teosinte-maize hybrid. Mangelsdorf and Reeves (9) studied the fertility in hybrids of Florida..., when crossed with maize, produce F1 hybrids with a high degree of fertility. This indicates that the chromosomes of these teosintes and m3ize are quite similar, and that normal pairing ordinarily occurs at meiosis. This latter fact has been...

  8. Maize or 'Indian Corn' and its wild relatives, the teosintes (Zea species), differ profoundly in both ear

    E-print Network

    Doebley, John

    profoundly in both ear morphology and plant growth form (Figs 1, 2). Nevertheless, substantial genetic by a tassel, while the short lateral branches of maize are tipped by ears. Adapted from Ref. 19. The 'key. In maize, the lateral branches are short and terminated by female inflorescences (ears). Second

  9. Bacterial endophytes from wild maize suppress Fusarium graminearum in modern maize and inhibit mycotoxin accumulation

    PubMed Central

    Mousa, Walaa K.; Shearer, Charles R.; Limay-Rios, Victor; Zhou, Ting; Raizada, Manish N.

    2015-01-01

    Wild maize (teosinte) has been reported to be less susceptible to pests than their modern maize (corn) relatives. Endophytes, defined as microbes that inhabit plants without causing disease, are known for their ability to antagonize plant pests and pathogens. We hypothesized that the wild relatives of modern maize may host endophytes that combat pathogens. Fusarium graminearum is the fungus that causes Gibberella Ear Rot (GER) in modern maize and produces the mycotoxin, deoxynivalenol (DON). In this study, 215 bacterial endophytes, previously isolated from diverse maize genotypes including wild teosintes, traditional landraces and modern varieties, were tested for their ability to antagonize F. graminearum in vitro. Candidate endophytes were then tested for their ability to suppress GER in modern maize in independent greenhouse trials. The results revealed that three candidate endophytes derived from wild teosintes were most potent in suppressing F. graminearum in vitro and GER in a modern maize hybrid. These wild teosinte endophytes could suppress a broad spectrum of fungal pathogens of modern crops in vitro. The teosinte endophytes also suppressed DON mycotoxin during storage to below acceptable safety threshold levels. A fourth, less robust anti-fungal strain was isolated from a modern maize hybrid. Three of the anti-fungal endophytes were predicted to be Paenibacillus polymyxa, along with one strain of Citrobacter. Microscopy studies suggested a fungicidal mode of action by all four strains. Molecular and biochemical studies showed that the P. polymyxa strains produced the previously characterized anti-Fusarium compound, fusaricidin. Our results suggest that the wild relatives of modern crops may serve as a valuable reservoir for endophytes in the ongoing fight against serious threats to modern agriculture. We discuss the possible impact of crop evolution and domestication on endophytes in the context of plant defense. PMID:26500660

  10. Bacterial endophytes from wild maize suppress Fusarium graminearum in modern maize and inhibit mycotoxin accumulation.

    PubMed

    Mousa, Walaa K; Shearer, Charles R; Limay-Rios, Victor; Zhou, Ting; Raizada, Manish N

    2015-01-01

    Wild maize (teosinte) has been reported to be less susceptible to pests than their modern maize (corn) relatives. Endophytes, defined as microbes that inhabit plants without causing disease, are known for their ability to antagonize plant pests and pathogens. We hypothesized that the wild relatives of modern maize may host endophytes that combat pathogens. Fusarium graminearum is the fungus that causes Gibberella Ear Rot (GER) in modern maize and produces the mycotoxin, deoxynivalenol (DON). In this study, 215 bacterial endophytes, previously isolated from diverse maize genotypes including wild teosintes, traditional landraces and modern varieties, were tested for their ability to antagonize F. graminearum in vitro. Candidate endophytes were then tested for their ability to suppress GER in modern maize in independent greenhouse trials. The results revealed that three candidate endophytes derived from wild teosintes were most potent in suppressing F. graminearum in vitro and GER in a modern maize hybrid. These wild teosinte endophytes could suppress a broad spectrum of fungal pathogens of modern crops in vitro. The teosinte endophytes also suppressed DON mycotoxin during storage to below acceptable safety threshold levels. A fourth, less robust anti-fungal strain was isolated from a modern maize hybrid. Three of the anti-fungal endophytes were predicted to be Paenibacillus polymyxa, along with one strain of Citrobacter. Microscopy studies suggested a fungicidal mode of action by all four strains. Molecular and biochemical studies showed that the P. polymyxa strains produced the previously characterized anti-Fusarium compound, fusaricidin. Our results suggest that the wild relatives of modern crops may serve as a valuable reservoir for endophytes in the ongoing fight against serious threats to modern agriculture. We discuss the possible impact of crop evolution and domestication on endophytes in the context of plant defense. PMID:26500660

  11. A cellular study of teosinte Zea mays ssp. parviglumis (Poaceae) caryopsis development showing several processes conserved in maize

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Although recent molecular studies elucidate the genetic background leading to changed morphology of maize female inflorescence and the structure of the caryopsis during the domestication of maize (Zea mays ssp. mays) from its wild progenitor teosinte (Zea mays ssp. parviglumis), the mechanisms under...

  12. Collecting crop wild relatives: an emerging priority

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Wild relatives of crop species (CWR) are an important resource to support the development of crops adapted to climate change. Historically, efforts to conserve agricultural biodiversity have relegated the collection of CWR species to the back burner. As a result, significant collecting gaps remain. ...

  13. Three New Teosintes (Zea spp., Poaceae) From Mexico

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The discovery of new species of teosinte from México motivated the comparative study of populations from México, Guatemala and Nicaragua through detailed ecogeographic, morphologic, cytogenetic and molecular characterization. The study involved a comparative analysis of morphological, ecogeographic,...

  14. Identifying novel resistance genes in rice wild relatives

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice blast and sheath blight are major fungal diseases of cultivated rice (Oryza sativa L. ) that limit Arkansas rough rice yields and market potential. Resistance to these diseases has been found in rice wild relatives (Oryza spp.) A collection of these wild relatives originating from outside the U...

  15. Modulation of auxin-binding protein 1 gene expression in maize and the teosintes by transposon insertions in its promoter.

    PubMed

    Elrouby, Nabil; Bureau, Thomas E

    2012-02-01

    Auxin plays crucial roles in plant development. Auxin-binding protein 1 (ABP1) is an auxin receptor required to coordinate cell division and expansion during postembryonic shoot development, and differential auxin responses during root growth. While ABP1 is encoded by a single gene in maize, multiple gene copies exist in teosinte, the wild relatives of maize. We have previously shown that some of the differences between these genes are caused by multiple transposon insertions in the promoter. Here we show that the different ABP1 promoter types confer differential gene expression levels on a firefly luciferase reporter gene. We also discovered a negative regulatory sequence upstream of the conserved transcriptional start site. When this sequence is insulated by an Ac-like transposon or deleted in natural ABP1 gene variants, expression levels are enhanced. Promoters combining both a MITE and a solo-LTR showed small but significant increase in expression compared to those containing only one insertion. This increase seems to be additive, suggesting that it may be due to enhancer sequences present within these transposons. Our results point to a potential role of the ABP1-associated transposons in the modulation of ABP1 gene expression. PMID:22187004

  16. Response to Comment on "Declining Wild Salmon Populations in Relation

    E-print Network

    Lewis, Mark

    Response to Comment on "Declining Wild Salmon Populations in Relation to Parasites from Farm Salmon the effect of sea lice (Lepeophtheirus salmonis) infestations on wild pink salmon (Oncorhynchus gorbuscha conclusions. W e agree with Riddell et al. (1) that many factors affect salmon survival. In our study

  17. EVALUATING RICE WILDE RELATIVES (ORYZA SPP.) FOR DISEASE RESISTANCE

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice wild relatives (Oryza spp.) are an important source of novel pest resistance genes, as well as tolerance to abiotic stresses and yield enhancing traits. Rice sheath blight caused by Rhizoctonia solani Kühn and leaf blast, Magnaporthe grisea (T.T. Herbert) Yaegashi & Udagawa, are major fungal d...

  18. MAPPING R-GENES IN RICE WILD RELATIVES (ORYZA SPP.)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice sheath blight caused by Rhizoctonia solani Kühn and leaf blast caused by Magnaporthe grisea (T.T. Herbert) Yaegashi & Udagawa are major fungal diseases of cultivated rice (Oryza sativa L.). Rice wild relatives (Oryza spp.) are the source of several resistance (R-) genes including those for bla...

  19. EVALUATION OF LINKAGE DISEQUILIBRIUM IN RICE AND ITS WILD RELATIVES

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The linkage disequilibrium (LD) background level in 172 accessions of rice (Oryza sativa L.) and rice wild relative (Oryza spp.) was analyzed using 120 SSR markers. The accessions were divided into three germplasm sets. One set consisted of 53 rice accessions introduced from seven countries, inclu...

  20. An inventory of crop wild relatives of the United States

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The use of crop wild relatives (CWR) in breeding is likely to continue to intensify as utilization techniques improve and crop adaptation to climate change becomes more pressing. Significant gaps remain in the conservation of these genetic resources, constraining availability for research. As a fi...

  1. The GRIN-Taxonomy crop wild relative inventory

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In order to provide an informational tool for assessing and prioritizing germplasm needs for ex situ conservation in the U.S. National Plant Germplasm System (NPGS), the USDA Agricultural Research Service in 2008 initiated a project to identify wild relatives (CWR) of major and minor crops. Each cro...

  2. Beyond biodiversity: Ecosystem services of crop wild relatives

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Crop wild relatives (CWRs) and crop progenitors were among the first natural ecosystem services available to humans in building the foundations of agriculture in an era of remarkable climate change some 10,000 years ago. Ever since, spatial and temporal variation in micro- and macro-environments, an...

  3. The GRIN-Taxonomy Crop Wild Relative Inventory

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In order to provide an informational tool for assessing and prioritizing germplasm needs for ex situ conservation in the U.S. National Plant Germplasm System (NPGS), the USDA Agricultural Research Service in 2008 initiated a project to identify crop wild relatives (CWR) of major and minor crops. Eac...

  4. A Rapid and Efficient Method for Assessing Pathogenicity of Ustilago maydis on Maize and Teosinte Lines

    PubMed Central

    Chavan, Suchitra; Smith, Shavannor M.

    2014-01-01

    Maize is a major cereal crop worldwide. However, susceptibility to biotrophic pathogens is the primary constraint to increasing productivity. U. maydis is a biotrophic fungal pathogen and the causal agent of corn smut on maize. This disease is responsible for significant yield losses of approximately $1.0 billion annually in the U.S.1 Several methods including crop rotation, fungicide application and seed treatments are currently used to control corn smut2. However, host resistance is the only practical method for managing corn smut. Identification of crop plants including maize, wheat, and rice that are resistant to various biotrophic pathogens has significantly decreased yield losses annually3-5. Therefore, the use of a pathogen inoculation method that efficiently and reproducibly delivers the pathogen in between the plant leaves, would facilitate the rapid identification of maize lines that are resistant to U. maydis. As, a first step toward indentifying maize lines that are resistant to U. maydis, a needle injection inoculation method and a resistance reaction screening method was utilized to inoculate maize, teosinte, and maize x teosinte introgression lines with a U. maydis strain and to select resistant plants. Maize, teosinte and maize x teosinte introgression lines, consisting of about 700 plants, were planted, inoculated with a strain of U. maydis, and screened for resistance. The inoculation and screening methods successfully identified three teosinte lines resistant to U. maydis. Here a detailed needle injection inoculation and resistance reaction screening protocol for maize, teosinte, and maize x teosinte introgression lines is presented. This study demonstrates that needle injection inoculation is an invaluable tool in agriculture that can efficiently deliver U. maydis in between the plant leaves and has provided plant lines that are resistant to U. maydis that can now be combined and tested in breeding programs for improved disease resistance. PMID:24430201

  5. Copyright 0 1995by the Genetics Society of America teosinte branched1 and the Origin of Maize: Evidence for Epistasis and the

    E-print Network

    Doebley, John

    ) controllingdifferences inplantand inflorescence architecture between maize and its progenitor (teosinte) were analyzed teosinte branchedl (tbl).This QTL has effects on inflorescence sex and the number and lengthof internodes in the lateral branches and inflorescences. This QTL hasstrong phenotypic effects in teosinte background

  6. Enhancing the Conservation of Crop Wild Relatives in England

    PubMed Central

    Fielder, Hannah; Brotherton, Peter; Hosking, Julian; Hopkins, John J.; Ford-Lloyd, Brian; Maxted, Nigel

    2015-01-01

    Humans require resilient, rapidly renewable and sustainable supplies of food and many other plant-derived supplies. However, the combined effects of climate change and population growth compromise the provision of these supplies particularly in respect to global food security. Crop wild relatives (CWR) contain higher genetic diversity than crops and harbour traits that can improve crop resilience and yield through plant breeding. However, in common with most countries, CWR are poorly conserved in England. There is currently no provision for long-term CWR conservation in situ, and comprehensive ex situ collection and storage of CWR is also lacking. However, there is a commitment to achieve their conservation in England’s Biodiversity Strategy and the UK has international commitments to do so as part of the Global Plant Conservation Strategy. Here, we identify a series of measures that could enhance the conservation of English CWR, thereby supporting the achievement of these national and international objectives. We provide an inventory of 148 priority English CWR, highlight hotspots of CWR diversity in sites including The Lizard Peninsula, the Dorset coast and Cambridgeshire and suggest appropriate sites for the establishment of a complementary network of genetic reserves. We also identify individual in situ and ex situ priorities for each English CWR. Based on these analyses, we make recommendations whose implementation could provide effective, long-term conservation of English CWR whilst facilitating their use in crop improvement. PMID:26110773

  7. Enhancing the conservation of crop wild relatives in England.

    PubMed

    Fielder, Hannah; Brotherton, Peter; Hosking, Julian; Hopkins, John J; Ford-Lloyd, Brian; Maxted, Nigel

    2015-01-01

    Humans require resilient, rapidly renewable and sustainable supplies of food and many other plant-derived supplies. However, the combined effects of climate change and population growth compromise the provision of these supplies particularly in respect to global food security. Crop wild relatives (CWR) contain higher genetic diversity than crops and harbour traits that can improve crop resilience and yield through plant breeding. However, in common with most countries, CWR are poorly conserved in England. There is currently no provision for long-term CWR conservation in situ, and comprehensive ex situ collection and storage of CWR is also lacking. However, there is a commitment to achieve their conservation in England's Biodiversity Strategy and the UK has international commitments to do so as part of the Global Plant Conservation Strategy. Here, we identify a series of measures that could enhance the conservation of English CWR, thereby supporting the achievement of these national and international objectives. We provide an inventory of 148 priority English CWR, highlight hotspots of CWR diversity in sites including The Lizard Peninsula, the Dorset coast and Cambridgeshire and suggest appropriate sites for the establishment of a complementary network of genetic reserves. We also identify individual in situ and ex situ priorities for each English CWR. Based on these analyses, we make recommendations whose implementation could provide effective, long-term conservation of English CWR whilst facilitating their use in crop improvement. PMID:26110773

  8. The Genetic Architecture of Complex Traits in Teosinte (Zea mays ssp. parviglumis): New Evidence from Association Mapping

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Our previous association analyses showed that variation at major regulatory genes contributes to standing variation for complex traits in Balsas teosinte, the progenitor of maize. This study expands our previous association mapping effort in teosinte by testing 123 markers in 52 candidate genes for ...

  9. Do Cultivated Varieties of Native Plants Have the Ability to Outperform Their Wild Relatives?

    PubMed Central

    Schröder, Roland; Prasse, Rüdiger

    2013-01-01

    Vast amounts of cultivars of native plants are annually introduced into the semi-natural range of their wild relatives for re-vegetation and restoration. As cultivars are often selected towards enhanced biomass production and might transfer these traits into wild relatives by hybridization, it is suggested that cultivars and the wild × cultivar hybrids are competitively superior to their wild relatives. The release of such varieties may therefore result in unintended changes in native vegetation. In this study we examined for two species frequently used in re-vegetation (Plantago lanceolata and Lotus corniculatus) whether cultivars and artificially generated intra-specific wild × cultivar hybrids may produce a higher vegetative and generative biomass than their wilds. For that purpose a competition experiment was conducted for two growing seasons in a common garden. Every plant type was growing (a.) alone, (b.) in pairwise combination with a similar plant type and (c.) in pairwise interaction with a different plant type. When competing with wilds cultivars of both species showed larger biomass production than their wilds in the first year only and hybrids showed larger biomass production than their wild relatives in both study years. As biomass production is an important factor determining fitness and competitive ability, we conclude that cultivars and hybrids are competitively superior their wild relatives. However, cultivars of both species experienced large fitness reductions (nearly complete mortality in L. corniculatus) due to local climatic conditions. We conclude that cultivars are good competitors only as long as they are not subjected to stressful environmental factors. As hybrids seemed to inherit both the ability to cope with the local climatic conditions from their wild parents as well as the enhanced competitive strength from their cultivars, we regard them as strong competitors and assume that they are able to outperform their wilds at least over the short-term. PMID:23951081

  10. Ecogeography and utility to plant breeding of the crop wild relatives of sunflower (Helianthus annuus L.)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Crop wild relatives (CWR) are a rich source of genetic diversity for crop improvement. Combining ecogeographic and phylogenetic techniques can inform both conservation and breeding. Geographic occurrence, bioclimatic, and biophysical data were used to predict species distributions, range overlap and...

  11. Ex Situ Conservation Priorities for the Wild Relatives of Potato (Solanum L. Section Petota)

    PubMed Central

    Castañeda-Álvarez, Nora P.; de Haan, Stef; Juárez, Henry; Khoury, Colin K.; Achicanoy, Harold A.; Sosa, Chrystian C.; Bernau, Vivian; Salas, Alberto; Heider, Bettina; Simon, Reinhard; Maxted, Nigel; Spooner, David M.

    2015-01-01

    Crop wild relatives have a long history of use in potato breeding, particularly for pest and disease resistance, and are expected to be increasingly used in the search for tolerance to biotic and abiotic stresses. Their current and future use in crop improvement depends on their availability in ex situ germplasm collections. As these plants are impacted in the wild by habitat destruction and climate change, actions to ensure their conservation ex situ become ever more urgent. We analyzed the state of ex situ conservation of 73 of the closest wild relatives of potato (Solanum section Petota) with the aim of establishing priorities for further collecting to fill important gaps in germplasm collections. A total of 32 species (43.8%), were assigned high priority for further collecting due to severe gaps in their ex situ collections. Such gaps are most pronounced in the geographic center of diversity of the wild relatives in Peru. A total of 20 and 18 species were assessed as medium and low priority for further collecting, respectively, with only three species determined to be sufficiently represented currently. Priorities for further collecting include: (i) species completely lacking representation in germplasm collections; (ii) other high priority taxa, with geographic emphasis on the center of species diversity; (iii) medium priority species. Such collecting efforts combined with further emphasis on improving ex situ conservation technologies and methods, performing genotypic and phenotypic characterization of wild relative diversity, monitoring wild populations in situ, and making conserved wild relatives and their associated data accessible to the global research community, represent key steps in ensuring the long-term availability of the wild genetic resources of this important crop. PMID:25923711

  12. Cloning and expression analysis of hemoglobin genes from maize (Zea mays ssp. mays) and teosinte (Zea mays ssp. parviglumis).

    PubMed

    Aréchaga-Ocampo, E; Saenz-Rivera, J; Sarath, G; Klucas, R V; Arredondo-Peter, R

    2001-11-11

    With the exception of barley and rice, little is known about the existence of hemoglobins (Hbs) in cereals. This work reports the cloning and analysis of hb genes from maize (Zea mays ssp. mays) and teosinte (Zea mays ssp. parviglumis). Coding sequences of maize and teosinte hb genes (hbm and hbt, respectively) are highly similar to each other and are interrupted by three introns located at identical positions as other plant hb genes. Sequences of predicted Hbm and Hbt proteins are identical. The hydropathic profile of Hbm and Hbt is highly similar to that of rice Hb1, suggesting that Hbm, Hbt and Hb1 have the same tertiary structure and biochemical properties. Expression analysis showed that low levels of Hb transcripts, but considerable levels of Hb proteins exist in maize embryonic organs. No Hb transcripts and proteins were detected in teosinte embryonic organs. Low levels of Hb proteins, but no Hb transcripts, were detected in maize and teosinte vegetative organs. These observations suggest that the regulation of hb genes is different in maize and teosinte embryonic organs, and that the expression of hb genes is down- or up-regulated in maize and teosinte, respectively, from germination to vegetative growing. PMID:11718894

  13. Exploring genetic diversity and potential novel disease resistance genes in a collection of rice wild relatives

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Wild relatives of rice (Oryza spp.) and introduced rice (O. sativa) germplasm are important sources of novel resistance (R-) genes for rice improvement. Rice sheath blight, caused by Rhizotonia solani, and leaf blast, caused by Magnaportha oryzae, are major fungal diseases of rice worldwide. To id...

  14. A Test of Taxonomic Predictivity: Resistance to White Mold in Wild Relatives of Cultivated Potato

    E-print Network

    Spooner, David

    A Test of Taxonomic Predictivity: Resistance to White Mold in Wild Relatives of Cultivated Potato as an empirical test of prediction by associating resistance to white mold [caused by the fungal pathogen variation for resistance to white mold occurs both within and among species. No consistent association

  15. INCIDENCE OF INTROGRESSION BETWEEN CULTIVATED ALFALFA AND WILD RELATIVES IN NORTHWESTERN KAZAKHSTAN.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Central Asia is considered the primary center of origin for alfalfa and has a rich diversity of taxa in the Medicago sativa Complex. An exploration was carried out in 2000 to collect germplasm of wild relatives of alfalfa in Northwestern Kazakhstan. Russian scientists had previously proposed areas w...

  16. Identifying wild relatives of subtropical and temperate fruit and nut crops

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In 2008 the Plant Exchange Office (PEO) of the Agricultural Research Service began a concentrated effort to identify, classify, and provide a full treatment in the taxonomy area of the Germplasm Resources Information Network (GRIN) for all primary, secondary, and tertiary genetic wild relatives (CWR...

  17. Gastrointestinal parasites in relation to host traits and group factors in wild meerkats Suricata suricatta

    E-print Network

    Leclaire, Sarah

    Gastrointestinal parasites in relation to host traits and group factors in wild meerkats Suricata, UK 2 Kalahari Meerkat Project, Kuruman River Reserve, 8467 Van Zylsrus, Northern Cape, South Africa 3 2014) SUMMARY Meerkats are one of the most endearing of South African's wildlife celebrities and one

  18. Two new antioxidant malonated caffeoylquinic acid isomers in fruits of wild eggplant relatives

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Fruits of both the cultivated eggplant species Solanum melongena and its wild relative Solanum incanum have a high content of hydroxycinnamic acid conjugates, which along with other phenylpropanoids are implicated in the human health benefits of various fruits and vegetables. Monocaffeoylquinic acid...

  19. Natural history of crop-related wild species: Uses in pest habitat management

    NASA Astrophysics Data System (ADS)

    Salick, Jan

    1983-01-01

    The natural histories of crop-related wild species in their native habitats can be used to develop novel pest management strategies. Traditionally, such information has provided insights for biological control, plant breeding, crop management, and applied ecology Further insights can be garnered.

  20. Crop wild relatives of Medicago in Russia and neighboring countries: gap analysis for effective conservation

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The genus Medicago includes important species used for forage, fodder and land improvement. The countries of the Former Soviet Union have a wide diversity of alfalfa crop wild relatives and annual medic species. The N.I. Vavilov Institute of Plant Industry (VIR) has a long history of collecting and ...

  1. FIRST INTERNATIONAL SYMPOSIUM ON WILD RELATIVES OF SUBTROPICAL AND TEMPERATE FRUIT AND NUT CROPS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Over 50 participants from 15 different countries would spend five days, March 19-23 2011, in open discussion on the status of conservation, management, and sustainable utilization of wild relatives of subtropical and temperate fruit and nut crops. This was the first such meeting, co-convened by Dr. ...

  2. IDENTIFYING NOVEL R-GENES IN RICE WILD RELATIVES WITH MICROSATELLITE MARKERS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice wild relatives (Oryza spp.) are an important source of novel R(resistance)-genes for rice improvement. Rice sheath blight, caused by Rhizoctonia solani, and leaf blast, caused by Magnaporthe grisea, are major fungal diseases of cultivated rice (O. sativa) in the USA and of irrigated rice world...

  3. New 5-O-caffeoylquinic acid derivatives in fruit of the wild eggplant relative Solanum viarum

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Fruit of cultivated eggplant (Solanum melongena) and several wild relatives (S. aethiopicum, S. macrocarpon, S. anguivi, and S. incanum) have a high content of hydroxycinnamic acid (HCA) conjugates. Typically, caffeoylquinic acid esters predominate, and in particular chlorogenic acid [5-O-(E)-caffeo...

  4. Characterization and expression analysis of a Retinoblastoma-related gene from Chinese wild Vitis pseudoreticulata

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Retinoblastoma-related (RBR) genes, a conserved gene family in higher eukaryotes, plays an important role in cell differentiation, development and mammalian cell death in animals; however, little is known about its function in plants. In this study, an RBR gene was isolated from the Chinese wild gr...

  5. A case for crop wild relative preservation and utilization in potato (Solanum tuberosum L.)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Environmental degradation and climate change pose a threat to global food security. Crop wild relatives (CWR) provide a critical resource to address food security needs by providing genetic diversity for crop improvement, leading to increased plasticity and productivity. However, plant breeders have...

  6. Effective conservation of Medicago Crop Wild Relatives in Russia and neighbouring countries: a gap analysis points the way forward

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Gap analysis is an effective way to review and refine conservation strategies for crop wild relatives. We developed a comprehensive database containing over 2400 accessions of Medicago crop wild relatives that had been collected in the area of the Former Soviet Union (FSU). Using the data we develop...

  7. Introgression of novel traits from a wild wheat relative improves drought adaptation in wheat.

    PubMed

    Placido, Dante F; Campbell, Malachy T; Folsom, Jing J; Cui, Xinping; Kruger, Greg R; Baenziger, P Stephen; Walia, Harkamal

    2013-04-01

    Root architecture traits are an important component for improving water stress adaptation. However, selection for aboveground traits under favorable environments in modern cultivars may have led to an inadvertent loss of genes and novel alleles beneficial for adapting to environments with limited water. In this study, we elucidate the physiological and molecular consequences of introgressing an alien chromosome segment (7DL) from a wild wheat relative species (Agropyron elongatum) into cultivated wheat (Triticum aestivum). The wheat translocation line had improved water stress adaptation and higher root and shoot biomass compared with the control genotypes, which showed significant drops in root and shoot biomass during stress. Enhanced access to water due to higher root biomass enabled the translocation line to maintain more favorable gas-exchange and carbon assimilation levels relative to the wild-type wheat genotypes during water stress. Transcriptome analysis identified candidate genes associated with root development. Two of these candidate genes mapped to the site of translocation on chromosome 7DL based on single-feature polymorphism analysis. A brassinosteroid signaling pathway was predicted to be involved in the novel root responses observed in the A. elongatum translocation line, based on the coexpression-based gene network generated by seeding the network with the candidate genes. We present an effective and highly integrated approach that combines root phenotyping, whole-plant physiology, and functional genomics to discover novel root traits and the underlying genes from a wild related species to improve drought adaptation in cultivated wheat. PMID:23426195

  8. Introgression of Novel Traits from a Wild Wheat Relative Improves Drought Adaptation in Wheat1[W

    PubMed Central

    Placido, Dante F.; Campbell, Malachy T.; Folsom, Jing J.; Cui, Xinping; Kruger, Greg R.; Baenziger, P. Stephen; Walia, Harkamal

    2013-01-01

    Root architecture traits are an important component for improving water stress adaptation. However, selection for aboveground traits under favorable environments in modern cultivars may have led to an inadvertent loss of genes and novel alleles beneficial for adapting to environments with limited water. In this study, we elucidate the physiological and molecular consequences of introgressing an alien chromosome segment (7DL) from a wild wheat relative species (Agropyron elongatum) into cultivated wheat (Triticum aestivum). The wheat translocation line had improved water stress adaptation and higher root and shoot biomass compared with the control genotypes, which showed significant drops in root and shoot biomass during stress. Enhanced access to water due to higher root biomass enabled the translocation line to maintain more favorable gas-exchange and carbon assimilation levels relative to the wild-type wheat genotypes during water stress. Transcriptome analysis identified candidate genes associated with root development. Two of these candidate genes mapped to the site of translocation on chromosome 7DL based on single-feature polymorphism analysis. A brassinosteroid signaling pathway was predicted to be involved in the novel root responses observed in the A. elongatum translocation line, based on the coexpression-based gene network generated by seeding the network with the candidate genes. We present an effective and highly integrated approach that combines root phenotyping, whole-plant physiology, and functional genomics to discover novel root traits and the underlying genes from a wild related species to improve drought adaptation in cultivated wheat. PMID:23426195

  9. Wheat alleles introgress into selfing wild relatives: empirical estimates from approximate Bayesian computation in Aegilops triuncialis.

    PubMed

    Pajkovic, Mila; Lappe, Sylvain; Barman, Rachel; Parisod, Christian; Neuenschwander, Samuel; Goudet, Jerome; Alvarez, Nadir; Guadagnuolo, Roberto; Felber, François; Arrigo, Nils

    2014-10-01

    Extensive gene flow between wheat (Triticum sp.) and several wild relatives of the genus Aegilops has recently been detected despite notoriously high levels of selfing in these species. Here, we assess and model the spread of wheat alleles into natural populations of the barbed goatgrass (Aegilops triuncialis), a wild wheat relative prevailing in the Mediterranean flora. Our sampling, based on an extensive survey of 31 Ae. triuncialis populations collected along a 60 km × 20 km area in southern Spain (Grazalema Mountain chain, Andalousia, totalling 458 specimens), is completed with 33 wheat cultivars representative of the European domesticated pool. All specimens were genotyped with amplified fragment length polymorphism with the aim of estimating wheat admixture levels in Ae. triuncialis populations. This survey first confirmed extensive hybridization and backcrossing of wheat into the wild species. We then used explicit modelling of populations and approximate Bayesian computation to estimate the selfing rate of Ae. triuncialis along with the magnitude, the tempo and the geographical distance over which wheat alleles introgress into Ae. triuncialis populations. These simulations confirmed that extensive introgression of wheat alleles (2.7 × 10(-4) wheat immigrants for each Ae. triuncialis resident, at each generation) into Ae. triuncialis occurs despite a high selfing rate (Fis ? 1 and selfing rate = 97%). These results are discussed in the light of risks associated with the release of genetically modified wheat cultivars in Mediterranean agrosystems. PMID:25223217

  10. Copyright 2002 by the Genetics Society of America Expression Patterns and Mutant Phenotype of teosinte branched1 Correlate With

    E-print Network

    Doebley, John

    in a male inflorescence under normal growth conditions. Previous QTL and molecular analysis suggested that the sex of the axillary inflorescence was not correlated with its length. RNA in situ hybridization showed with a function of suppressing growth of these tissues. Expression in teosinte inflorescence development suggests

  11. Genetic differentiation and hybrid identification using microsatellite markers in closely related wild species.

    PubMed

    Turchetto, Caroline; Segatto, Ana Lúcia A; Beduschi, Júlia; Bonatto, Sandro L; Freitas, Loreta B

    2015-01-01

    Identifying the genetic basis of speciation is critical for understanding the evolutionary history of closely related wild species. Recently diverged species facilitate the study of speciation because many genetic and morphological characteristics are still shared by the organisms under study. The Petunia genus grows in South American grasslands and comprises both recently diverged wild species and commercial species. In this work, we analysed two closely related species: Petunia exserta, which has a narrow endemic range and grows exclusively in rocky shelters, and Petunia axillaris, which is widely distributed and comprises three allopatric subspecies. Petunia axillaris ssp. axillaris and P. exserta occur in sympatry, and putative hybrids between them have been identified. Here, we analysed 14 expressed sequence tag-simple sequence repeats (EST-SSRs) in 126 wild individuals and 13 putative morphological hybrids with the goals of identifying differentially encoded alleles to characterize their natural genetic diversity, establishing a genetic profile for each taxon and to verify the presence of hybridization signal. Overall, 143 alleles were identified and all taxa contained private alleles. Four major groups were identified in clustering analyses, which indicated that there are genetic distinctions among the groups. The markers evaluated here will be useful in evolutionary studies involving these species and may help categorize individuals by species, thus enabling the identification of hybrids between both their putative taxa. The individuals with intermediate morphology presented private alleles of their both putative parental species, although they showed a level of genetic mixing that was comparable with some of the individuals with typical P. exserta morphology. The EST-SSR markers scattered throughout the Petunia genome are very efficient tools for characterizing the genetic diversity in wild taxa of this genus and aid in identifying interspecific hybrids based on the presence of private alleles. These properties indicate that these markers will be helpful tools in evolutionary studies. PMID:26187606

  12. Testing Taxonomic Predictivity of Foliar and Tuber Resistance to Phytophthora infestans in Wild Relatives of Potato.

    PubMed

    Khiutti, A; Spooner, D M; Jansky, S H; Halterman, D A

    2015-09-01

    Potato late blight, caused by the oomycete phytopathogen Phytophthora infestans, is a devastating disease found in potato-growing regions worldwide. Long-term management strategies to control late blight include the incorporation of host resistance to predominant strains. However, due to rapid genetic changes within pathogen populations, rapid and recurring identification and integration of novel host resistance traits is necessary. Wild relatives of potato offer a rich source of desirable traits, including late blight resistance, but screening methods can be time intensive. We tested the ability of taxonomy, ploidy, crossing group, breeding system, and geography to predict the presence of foliar and tuber late blight resistance in wild Solanum spp. Significant variation for resistance to both tuber and foliar late blight was found within and among species but there was no discernable predictive power based on taxonomic series, clade, ploidy, breeding system, elevation, or geographic location. We observed a moderate but significant correlation between tuber and foliar resistance within species. Although previously uncharacterized sources of both foliar and tuber resistance were identified, our study does not support an assumption that taxonomic or geographic data can be used to predict sources of late blight resistance in wild Solanum spp. PMID:25871860

  13. A single domestication for maize shown by multilocus microsatellite genotyping

    E-print Network

    Doebley, John

    their wild relative (teosinte). We present phylogenetic analyses based on 264 individual plants, each flow from teosinte into maize. Most domesticated plant and animal species originated during a brief on the diversity of ear shapes in maize, Galinat (7) concluded that distinct ancestral types of annual teosinte

  14. Antibodies to West Nile virus and related flaviviruses in wild boar, red foxes and other mesomammals from Spain.

    PubMed

    Gutiérrez-Guzmán, Ana-Valeria; Vicente, Joaquín; Sobrino, Raquel; Perez-Ramírez, Elisa; Llorente, Francisco; Höfle, Ursula

    2012-10-12

    Red foxes (Vulpes vulpes), wild boar (Sus scrofa) and Iberian pigs (Sus scrofa domestica) that are raised extensively outdoors, as well as other wild mesomammals from south central Spain and wild boar from Doñana National Park (DNP), were tested for antibodies against related flaviviruses by ELISA and for antibodies against WNV by VNT. Mean flavivirus seroprevalence according to ELISA was 20.4 ± 7.8% (21 out of 103) in red foxes, 12.6 ± 2.8% (69 out of 545) in wild boars, and 3.3±2.7% (6 out of 177) in Iberian pigs. A stone marten (Martes foina) also tested positive. Flavivirus seroprevalence in wild boar was significantly higher in DNP, and increased with age. Haemolysis of the serum samples limited interpretation of VNT to 28 samples, confirming WNV seroprevalence in one red fox, four Iberian pigs and nine wild boars. ELISA positive, microVNT negative samples suggest presence of non-neutralizing antibodies against WNV or antibodies to other antigenically related flaviviruses. Despite the importance of wetlands for flavivirus maintenance and amplification, WNV/flavivirus seroprevalence in wild boar and red foxes was not associated to wetland habitats. This is the first report of exposure of red foxes to WNV. With view to use of the tested species as sentinels for flavivirus activity, limited exposure of Iberian pigs that would be available for regular sampling, low numbers of foxes collected and concentration of wild boar harvest in the winter season are major drawbacks. PMID:22595138

  15. Domestication and defence: Foliar tannins and C/N ratios in cassava and a close wild relative

    NASA Astrophysics Data System (ADS)

    Mondolot, Laurence; Marlas, Amandine; Barbeau, Damien; Gargadennec, Annick; Pujol, Benoît; McKey, Doyle

    2008-09-01

    Plant domestication is accompanied by shifts in resource allocation, as a result of farmer selection for genotypes that give high yields in agricultural habitats. Relaxed natural selection for chemical and physical defences in these habitats could facilitate resource allocation to yield. We compared the concentrations of tannins, and C/N ratios, which are often correlated with investment in cell-wall compounds, in leaves of landraces of domesticated cassava ( Manihot esculenta) and a close wild relative in French Guiana. Foliar concentrations of tannins were about 1.9 times higher in the wild relative than in domesticated cassava. Histochemical analyses showed that tannins were present in nearly all palisade and spongy parenchyma cells of the wild taxon, but in only some cells of these tissues in M. esculenta. C/N ratios were also 1.9 times higher in leaves of the wild relative than in those of domesticated cassava. Tannins accounted for only a small proportion of total carbon, and the higher C/N ratio in wild than in domesticated cassava may reflect higher investment in carbon-containing compounds additional to tannins, such as cell-wall compounds. The divergence in these traits between cassava and this close wild relative mirrors a broad pattern observed in wild plant species across habitats varying in resource availability. One explanation for our results is that domestication in cassava may have favoured a shift from a resource conservation strategy to a resource acquisition strategy.

  16. Risk factors associated with capture-related death in eastern wild turkey hens

    USGS Publications Warehouse

    Nicholson, D.S.; Lochmiller, R.L.; Stewart, M.D.; Masters, R.E.; Leslie, David M., Jr.

    2000-01-01

    Capture-related mortality has been a notable risk in the handling of eastern wild turkey (Meleagris gallopavo silvestris). Our objective was to evaluate how environmental factors influence risk and identify physiological correlates that could be used to identify susceptible birds. During winter (January-March) 1995-97, 130 eastern wild turkey hens were captured in southeastern Oklahoma and radiocollared. Of those, 20 hens died ??? 14 days of capture. Serum creatine kinase activity (CK; P < 0.01), body temperature (P < 0.01), processing time (P = 0.02), and ambient temperature (P < 0.01) showed a positive relationship with mortality that occurred within 14 days of capture. Plasma corticosterone concentration (P = 0.08) and relative humidity (P < 0.01) showed a negative relationship with mortalities that occurred within 14 days post-capture. Stepwise logistic regression selected CK activity, relative humidity, and ambient temperature as the best predictors of mortality within 14 days post-capture. Our data suggest that susceptible individuals may be identified from CK activity and that capture-related mortality may be minimized by establishing guidelines of when to curtail capture operations based on various weather conditions.

  17. Ecogeography and utility to plant breeding of the crop wild relatives of sunflower (Helianthus annuus L.)

    PubMed Central

    Kantar, Michael B.; Sosa, Chrystian C.; Khoury, Colin K.; Castañeda-Álvarez, Nora P.; Achicanoy, Harold A.; Bernau, Vivian; Kane, Nolan C.; Marek, Laura; Seiler, Gerald; Rieseberg, Loren H.

    2015-01-01

    Crop wild relatives (CWR) are a rich source of genetic diversity for crop improvement. Combining ecogeographic and phylogenetic techniques can inform both conservation and breeding. Geographic occurrence, bioclimatic, and biophysical data were used to predict species distributions, range overlap and niche occupancy in 36 taxa closely related to sunflower (Helianthus annuus L.). Taxa lacking comprehensive ex situ conservation were identified. The predicted distributions for 36 Helianthus taxa identified substantial range overlap, range asymmetry and niche conservatism. Specific taxa (e.g., Helianthus deblis Nutt., Helianthus anomalus Blake, and Helianthus divaricatus L.) were identified as targets for traits of interest, particularly for abiotic stress tolerance, and adaptation to extreme soil properties. The combination of techniques demonstrates the potential for publicly available ecogeographic and phylogenetic data to facilitate the identification of possible sources of abiotic stress traits for plant breeding programs. Much of the primary genepool (wild H. annuus) occurs in extreme environments indicating that introgression of targeted traits may be relatively straightforward. Sister taxa in Helianthus have greater range overlap than more distantly related taxa within the genus. This adds to a growing body of literature suggesting that in plants (unlike some animal groups), geographic isolation may not be necessary for speciation. PMID:26500675

  18. Flooding tolerance in interspecific introgression lines containing chromosome segments from teosinte (Zea nicaraguensis) in maize (Zea mays subsp. mays)

    PubMed Central

    Mano, Y.; Omori, F.

    2013-01-01

    Background and Aims Nicaraguan teosinte (Zea nicaraguensis), a species found in frequently flooded areas, provides useful germplasm for breeding flooding-tolerant maize (Z. mays subsp. mays). The objective of this study was to select flooding-tolerant lines using a library of introgression lines (ILs), each containing a chromosome segment from Z. nicaraguensis in the maize inbred line Mi29. Methods To produce the ILs, a single F1 plant derived from a cross between maize Mi29 and Z. nicaraguensis was backcrossed to Mi29 three times, self-pollinated four times and genotyped using simple sequence repeat markers. Flooding tolerance was evaluated at the seedling stage under reducing soil conditions. Key Results By backcrossing and selfing, a series of 45 ILs were developed covering nearly the entire maize genome. Five flooding-tolerant lines were identified from among the ILs by evaluating leaf injury. Among these, line IL#18, containing a Z. nicaraguensis chromosome segment on the long arm of chromosome 4, showed the greatest tolerance to flooding, suggesting the presence of a major quantitative trait locus (QTL) in that region. The presence of the QTL was verified by examining flooding tolerance in a population segregating for the candidate region of chromosome 4. There was no significant relationship between the capacity to form constitutive aerenchyma and flooding tolerance in the ILs, indicating the presence of other factors related to flooding tolerance under reducing soil conditions. Conclusions A flooding-tolerant genotype, IL#18, was identified; this genotype should be useful for maize breeding. In addition, because the chromosome segments of Z. nicaraguensis in the ILs cover nearly the entire genome and Z. nicaraguensis possesses several unique traits related to flooding tolerance, the ILs should be valuable material for additional QTL detection and the development of flooding-tolerant maize lines. PMID:23877074

  19. [Book review] Fish Gene Pools: preservation of genetic resources in relation to wild fish stocks, edited by N. Ryman

    USGS Publications Warehouse

    Simon, R.C.

    1984-01-01

    Review of: Fish Gene Pools: Preservation of Genetic Resources in Relation to Wild Fish Stocks. Edited by N. Ryman. The Editorial Service/FRN, Box 6710, S-11385, Stockholm, Sweden. 1981. 111 pages. $16.00 (paper).

  20. Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives

    PubMed Central

    Bombarely, Aureliano; Munkvold, Jesse D.; York, Thomas; Menda, Naama; Martin, Gregory B.; Mueller, Lukas A.

    2015-01-01

    Background. Studies of ancestry are difficult in the tomato because it crosses with many wild relatives and species in the tomato clade that have diverged very recently. As a result, the phylogeny in relation to its closest relatives remains uncertain. By using the coding sequence from Solanum lycopersicum, S. galapagense, S. pimpinellifolium, S. corneliomuelleri, and S. tuberosum and the genomic sequence from S. lycopersicum ‘Heinz’, an heirloom line, S. lycopersicum ‘Yellow Pear’, and two of cultivated tomato’s closest relatives, S. galapagense and S. pimpinellifolium, we have aimed to resolve the phylogenies of these closely related species as well as identify phylogenetic discordance in the reference cultivated tomato. Results. Divergence date estimates suggest that the divergence of S. lycopersicum, S. galapagense, and S. pimpinellifolium happened less than 0.5 MYA. Phylogenies based on 8,857 coding sequences support grouping of S. lycopersicum and S. galapagense, although two secondary trees are also highly represented. A total of 25 genes in our analysis had sites with evidence of positive selection along the S. lycopersicum lineage. Whole genome phylogenies showed that while incongruence is prevalent in genomic comparisons between these genotypes, likely as a result of introgression and incomplete lineage sorting, a primary phylogenetic history was strongly supported. Conclusions. Based on analysis of these genotypes, S. galapagense appears to be closely related to S. lycopersicum, suggesting they had a common ancestor prior to the arrival of an S. galapagense ancestor to the Galápagos Islands, but after divergence of the sequenced S. pimpinellifolium. Genes showing selection along the S. lycopersicum lineage may be important in domestication or selection occurring post-domestication. Further analysis of intraspecific data in these species will help to establish the evolutionary history of cultivated tomato. The use of an heirloom line is helpful in deducing true phylogenetic information of S. lycopersicum and identifying regions of introgression from wild species. PMID:25780758

  1. Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives.

    PubMed

    Hodgins, Kathryn A; Lai, Zhao; Oliveira, Luiz O; Still, David W; Scascitelli, Moira; Barker, Michael S; Kane, Nolan C; Dempewolf, Hannes; Kozik, Alex; Kesseli, Richard V; Burke, John M; Michelmore, Richard W; Rieseberg, Loren H

    2014-01-01

    Although the Compositae harbours only two major food crops, sunflower and lettuce, many other species in this family are utilized by humans and have experienced various levels of domestication. Here, we have used next-generation sequencing technology to develop 15 reference transcriptome assemblies for Compositae crops or their wild relatives. These data allow us to gain insight into the evolutionary and genomic consequences of plant domestication. Specifically, we performed Illumina sequencing of Cichorium endivia, Cichorium intybus, Echinacea angustifolia, Iva annua, Helianthus tuberosus, Dahlia hybrida, Leontodon taraxacoides and Glebionis segetum, as well 454 sequencing of Guizotia scabra, Stevia rebaudiana, Parthenium argentatum and Smallanthus sonchifolius. Illumina reads were assembled using Trinity, and 454 reads were assembled using MIRA and CAP3. We evaluated the coverage of the transcriptomes using BLASTX analysis of a set of ultra-conserved orthologs (UCOs) and recovered most of these genes (88-98%). We found a correlation between contig length and read length for the 454 assemblies, and greater contig lengths for the 454 compared with the Illumina assemblies. This suggests that longer reads can aid in the assembly of more complete transcripts. Finally, we compared the divergence of orthologs at synonymous sites (Ks) between Compositae crops and their wild relatives and found greater divergence when the progenitors were self-incompatible. We also found greater divergence between pairs of taxa that had some evidence of postzygotic isolation. For several more distantly related congeners, such as chicory and endive, we identified a signature of introgression in the distribution of Ks values. PMID:24103297

  2. The Genomic Signature of Crop-Wild Introgression in Maize

    PubMed Central

    Hufford, Matthew B.; Lubinksy, Pesach; Pyhäjärvi, Tanja; Devengenzo, Michael T.; Ellstrand, Norman C.; Ross-Ibarra, Jeffrey

    2013-01-01

    The evolutionary significance of hybridization and subsequent introgression has long been appreciated, but evaluation of the genome-wide effects of these phenomena has only recently become possible. Crop-wild study systems represent ideal opportunities to examine evolution through hybridization. For example, maize and the conspecific wild teosinte Zea mays ssp. mexicana (hereafter, mexicana) are known to hybridize in the fields of highland Mexico. Despite widespread evidence of gene flow, maize and mexicana maintain distinct morphologies and have done so in sympatry for thousands of years. Neither the genomic extent nor the evolutionary importance of introgression between these taxa is understood. In this study we assessed patterns of genome-wide introgression based on 39,029 single nucleotide polymorphisms genotyped in 189 individuals from nine sympatric maize-mexicana populations and reference allopatric populations. While portions of the maize and mexicana genomes appeared resistant to introgression (notably near known cross-incompatibility and domestication loci), we detected widespread evidence for introgression in both directions of gene flow. Through further characterization of these genomic regions and preliminary growth chamber experiments, we found evidence suggestive of the incorporation of adaptive mexicana alleles into maize during its expansion to the highlands of central Mexico. In contrast, very little evidence was found for adaptive introgression from maize to mexicana. The methods we have applied here can be replicated widely, and such analyses have the potential to greatly inform our understanding of evolution through introgressive hybridization. Crop species, due to their exceptional genomic resources and frequent histories of spread into sympatry with relatives, should be particularly influential in these studies. PMID:23671421

  3. Characterization and Expression Analysis of a Retinoblastoma-Related Gene from Chinese Wild Vitis pseudoreticulata.

    PubMed

    Wen, Zhifeng; Gao, Min; Jiao, Chen; Wang, Qian; Xu, Hui; Walter, Monika; Xu, Weirong; Bassett, Carole; Wang, Xiping

    2012-01-01

    Retinoblastoma-related (RBR) genes, a conserved gene family in higher eukaryotes, play important roles in cell differentiation, development, and mammalian cell death; however, little is known of their function in plants. In this study, a RBR gene was isolated from the Chinese wild grape, Vitis pseudoreticulata W. T. Wang clone "Baihe-35-1", and designated as VpRBR. The cDNA sequence of VpRBR was 3,030 bp and contained an open reading frame of 3,024 bp. Conceptual translation of this gene indicated a composition of 1,007 amino acids with a predicted molecular mass of 117.3 kDa. The predicted protein showed a retinoblastoma-associated protein domain A from amino acid residues 416 to 579, and domain B from residues 726 to 855. The result of expression analysis indicated that VpRBR was expressed in tissues, leaves, stem, tendrils, flower, and grape skin at different expression levels. Further quantitative reverse transcription-PCR (qRT-PCR) data indicated that VpRBR levels were higher in Erysiphe necator-treated "Baihe-35-1" and "Baihe-13-1", two resistant clones of Chinese wild V. pseudoreticulata, than in E. necator-treated "Hunan-1", a susceptible clone of V. pseudoreticulata. Furthermore, the expression of VpRBR in response to salicylic acid (SA), methyl jasmonate (MeJA), and ethylene (Eth) in grape leaves was also investigated. Taken together, these data indicate that VpRBR may contribute to some aspect of powdery mildew resistance in grape. PMID:24415838

  4. A comparative study of salt tolerance parameters in 11 wild relatives of Arabidopsis thaliana

    PubMed Central

    Orsini, Francesco; D'Urzo, Matilde Paino; Inan, Gunsu; Serra, Sara; Oh, Dong-Ha; Mickelbart, Michael V.; Consiglio, Federica; Jeong, Jae Cheol; Yun, Dae-Jin; Bohnert, Hans J.; Bressan, Ray A.; Maggio, Albino

    2010-01-01

    Salinity is an abiotic stress that limits both yield and the expansion of agricultural crops to new areas. In the last 20 years our basic understanding of the mechanisms underlying plant tolerance and adaptation to saline environments has greatly improved owing to active development of advanced tools in molecular, genomics, and bioinformatics analyses. However, the full potential of investigative power has not been fully exploited, because the use of halophytes as model systems in plant salt tolerance research is largely neglected. The recent introduction of halophytic Arabidopsis-Relative Model Species (ARMS) has begun to compare and relate several unique genetic resources to the well-developed Arabidopsis model. In a search for candidates to begin to understand, through genetic analyses, the biological bases of salt tolerance, 11 wild relatives of Arabidopsis thaliana were compared: Barbarea verna, Capsella bursa-pastoris, Hirschfeldia incana, Lepidium densiflorum, Malcolmia triloba, Lepidium virginicum, Descurainia pinnata, Sisymbrium officinale, Thellungiella parvula, Thellungiella salsuginea (previously T. halophila), and Thlaspi arvense. Among these species, highly salt-tolerant (L. densiflorum and L. virginicum) and moderately salt-tolerant (M. triloba and H. incana) species were identified. Only T. parvula revealed a true halophytic habitus, comparable to the better studied Thellungiella salsuginea. Major differences in growth, water transport properties, and ion accumulation are observed and discussed to describe the distinctive traits and physiological responses that can now be studied genetically in salt stress research. PMID:20595237

  5. A comparative study of salt tolerance parameters in 11 wild relatives of Arabidopsis thaliana.

    PubMed

    Orsini, Francesco; D'Urzo, Matilde Paino; Inan, Gunsu; Serra, Sara; Oh, Dong-Ha; Mickelbart, Michael V; Consiglio, Federica; Li, Xia; Jeong, Jae Cheol; Yun, Dae-Jin; Bohnert, Hans J; Bressan, Ray A; Maggio, Albino

    2010-08-01

    Salinity is an abiotic stress that limits both yield and the expansion of agricultural crops to new areas. In the last 20 years our basic understanding of the mechanisms underlying plant tolerance and adaptation to saline environments has greatly improved owing to active development of advanced tools in molecular, genomics, and bioinformatics analyses. However, the full potential of investigative power has not been fully exploited, because the use of halophytes as model systems in plant salt tolerance research is largely neglected. The recent introduction of halophytic Arabidopsis-Relative Model Species (ARMS) has begun to compare and relate several unique genetic resources to the well-developed Arabidopsis model. In a search for candidates to begin to understand, through genetic analyses, the biological bases of salt tolerance, 11 wild relatives of Arabidopsis thaliana were compared: Barbarea verna, Capsella bursa-pastoris, Hirschfeldia incana, Lepidium densiflorum, Malcolmia triloba, Lepidium virginicum, Descurainia pinnata, Sisymbrium officinale, Thellungiella parvula, Thellungiella salsuginea (previously T. halophila), and Thlaspi arvense. Among these species, highly salt-tolerant (L. densiflorum and L. virginicum) and moderately salt-tolerant (M. triloba and H. incana) species were identified. Only T. parvula revealed a true halophytic habitus, comparable to the better studied Thellungiella salsuginea. Major differences in growth, water transport properties, and ion accumulation are observed and discussed to describe the distinctive traits and physiological responses that can now be studied genetically in salt stress research. PMID:20595237

  6. Maize Domestication and Anti-Herbivore Defences: Leaf-Specific Dynamics during Early Ontogeny of Maize and Its Wild Ancestors

    PubMed Central

    Maag, Daniel; Erb, Matthias; Bernal, Julio S.; Wolfender, Jean-Luc; Turlings, Ted C. J.; Glauser, Gaétan

    2015-01-01

    As a consequence of artificial selection for specific traits, crop plants underwent considerable genotypic and phenotypic changes during the process of domestication. These changes may have led to reduced resistance in the cultivated plant due to shifts in resource allocation from defensive traits to increased growth rates and yield. Modern maize (Zea mays ssp. mays) was domesticated from its ancestor Balsas teosinte (Z. mays ssp. parviglumis) approximately 9000 years ago. Although maize displays a high genetic overlap with its direct ancestor and other annual teosintes, several studies show that maize and its ancestors differ in their resistance phenotypes with teosintes being less susceptible to herbivore damage. However, the underlying mechanisms are poorly understood. Here we addressed the question to what extent maize domestication has affected two crucial chemical and one physical defence traits and whether differences in their expression may explain the differences in herbivore resistance levels. The ontogenetic trajectories of 1,4-benzoxazin-3-ones, maysin and leaf toughness were monitored for different leaf types across several maize cultivars and teosinte accessions during early vegetative growth stages. We found significant quantitative and qualitative differences in 1,4-benzoxazin-3-one accumulation in an initial pairwise comparison, but we did not find consistent differences between wild and cultivated genotypes during a more thorough examination employing several cultivars/accessions. Yet, 1,4-benzoxazin-3-one levels tended to decline more rapidly with plant age in the modern maize cultivars. Foliar maysin levels and leaf toughness increased with plant age in a leaf-specific manner, but were also unaffected by domestication. Based on our findings we suggest that defence traits other than the ones that were investigated are responsible for the observed differences in herbivore resistance between teosinte and maize. Furthermore, our results indicate that single pairwise comparisons may lead to false conclusions regarding the effects of domestication on defensive and possibly other traits. PMID:26267478

  7. How Wild is Wild?

    E-print Network

    Ritvo, Harriet

    2014-01-01

    There is no obvious line or boundary that separates wild animals from those that are not wild. Instead, there are expansive grey areas, of which the most conspicuous encompass the domesticated animals that have reverted ...

  8. H7N3 AVIAN INFLUENZA VIRUS FOUND IN A SOUTH AMERICAN WILD DUCK IS RELATED TO THE CHILEAN 2002 POULTRY OUTBREAK, CONTAINS GENES FROM EQUINE AND NORTH AMERICAN WILD BIRD LINEAGES, AND IS ADAPTED TO DOMESTIC TURKEYS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    An H7N3 avian influenza virus (AIV) was isolated from a Cinnamon Teal (Anas Cyanoptera) (A/CinnamonTeal/Bolivia.4537/01) during a survey of wild waterfowl in Bolivia in 2001. The NA and M genes had the greatest identity with North American wild bird isolates, the NS was most closely related to an E...

  9. Enhancement of aluminum tolerance in wheat by addition of chromosomes from the wild relative Leymus racemosus

    PubMed Central

    Mohammed, Yasir Serag Alnor; Eltayeb, Amin Elsadig; Tsujimoto, Hisashi

    2013-01-01

    Aluminum (Al) toxicity is the key factor limiting wheat production in acid soils. Soil liming has been used widely to increase the soil pH, but due to its high cost, breeding tolerant cultivars is more cost-effective mean to mitigate the problem. Tolerant cultivars could be developed by traditional breeding, genetic transformation or introgression of genes from wild relatives. We used 30 wheat alien chromosome addition lines to identify new genetic resources to improve wheat tolerance to Al and to identify the chromosomes harboring the tolerance genes. We evaluated these lines and their wheat background Chinese Spring for Al tolerance in hydroponic culture at various Al concentrations. We also investigated Al uptake, oxidative stress and cell membrane integrity. The L. racemosus chromosomes A and E significantly enhanced the Al tolerance of the wheat in term of relative root growth. At the highest Al concentration tested (200 ?M), line E had the greatest tolerance. The introgressed chromosomes did not affect Al uptake of the tolerant lines. We attribute the improved tolerance conferred by chromosome E to improved cell membrane integrity. Chromosome engineering with these two lines could produce Al-tolerant wheat cultivars. PMID:24399913

  10. Initial efforts to develop a national strategy to protect crop wild relatives native or naturalized in the United States

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Historically, the call to conserve crop wild relatives has been driven by habitat degradation fueled by exponential population growth. Today, we have a clarion call for action, as historic impetuses are compounded by the forecast of global climate change. In the United States efforts have been movin...

  11. Molecular characterization of rice wild relatives (Oryza spp.) and accelerating the development of disease resistant germplasm using microsatellite markers

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Wild relatives of crop species are a source of unique genes for crop improvement. Sheath blight (Rhizoctonia solani Kuhn) and blast [Magnaporthe grisea (T.T. Herbert) Yaegashi & Udagawa] are the major diseases of cultivated rice (Oryza sativa L.) in the U.S. A set of 150 markers is being used to c...

  12. Recent NPGS coordinated expeditions in the Trans-Caucasus Region to collect wild relatives of temperate fruit and nut crops

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The USDA Agricultural Research Service-managed National Plant Germplasm System (NPGS) coordinated several germplasm expeditions in the trans-Caucasus countries of Armenia, Azerbaijan, and Georgia beginning in 2001. One of the goals was to preserve valuable wild relatives of crop species ex situ at g...

  13. Plant Resistance to TSWV and Seed Accumulation of Resveratrol within Peanut Germplasm and Its Wild Relatives in the US Collection

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Biotic and abiotic stress may induce peanut plants to produce a high amount of resveratrol. The relationship of plant response to tomato spotted wilt virus (TSWV) and seed accumulation of resveratrol was investigated. Twenty peanut accessions and six wild relatives were selected from the US peanut g...

  14. Oryza nivara, a wild relative of cultivated rice, is a source of genes for improving seedling vigor

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice (Oryza sativa L.) wild relatives are a potential source of genetic diversity for cultivated rice improvement. An advanced backcross population was derived from the U.S. temperate japonica rice variety, M-202, a medium grain commercial cultivar grown in California, crossed with O. nivara Sharma...

  15. Wild Relatives of the Eggplant (Solanum melongena L.: Solanaceae): New Understanding of Species Names in a Complex Group

    PubMed Central

    Knapp, Sandra; Vorontsova, Maria S.; Prohens, Jaime

    2013-01-01

    Background The common or brinjal eggplant (Solanum melongena L.) belongs to the Leptostemonum Clade (the “spiny” solanums) of the species-rich genus Solanum (Solanaceae). Unlike most of the genus, the eggplant and its relatives are from the Old World; most eggplant wild relatives are from Africa. An informal system for naming eggplant wild relatives largely based on crossing and other biosystematics data has been in use for approximately a decade. This system recognises several forms of two broadly conceived species, S. incanum L. and S. melongena. Recent morphological and molecular work has shown that species-level differences exist between these entities, and a new species-level nomenclature has been identified as necessary for plant breeders and for the maintenance of accurately named germplasm. Methodology/Principal Findings We examined herbarium specimens from throughout the wild species ranges as part of a larger revision of the spiny solanums of Africa. Based on these morphological and molecular studies, we delimited species in the group to which the common eggplant belongs and constructed identification keys for the group. We also examined the monophyly of the group considered as the eggplant relatives by previous authors. Conclusions/Significance We recognise ten species in this group: S. aureitomentosum Bitter, S. campylacanthum A.Rich., S. cerasiferum Dunal, S. incanum L., S. insanum L., S. lichtensteinii Willd., S. linnaeanum Hepper & P.-M.L.Jaeger, S. melongena L., S. rigidum Lam. and S. umtuma Voronts. & S.Knapp. We review the history of naming and provide keys and character lists for all species. Ploidy level differences have not been investigated in the eggplant wild relatives; we identify this as a priority for improvement of crop wild relative use in breeding. The application of species-level names to these entities will help focus new collecting efforts for brinjal eggplant improvement and help facilitate information exchange. PMID:23451138

  16. Blood selenium concentrations and enzyme activities related to glutathione metabolism in wild emperor geese

    USGS Publications Warehouse

    Franson, J.C.; Hoffman, D.J.; Schmutz, J.A.

    2002-01-01

    In 1998, we collected blood samples from 63 emperor geese (Chen canagica) on their breeding grounds on the Yukon-Kuskokwim Delta (YKD) in western Alaska, USA. We studied the relationship between selenium concentrations in whole blood and the activities of glutathione peroxidase and glutathione reductase in plasma. Experimental studies have shown that plasma activities of these enzymes are useful biomarkers of selenium-induced oxidative stress, but little information is available on their relationship to selenium in the blood of wild birds. Adult female emperor geese incubating their eggs in mid-June had a higher mean concentration of selenium in their blood and a greater activity of glutathione peroxidase in their plasma than adult geese or goslings that were sampled during the adult flight feathermolting period in late July and early August. Glutathione peroxidase activity was positively correlated with the concentration of selenium in the blood of emperor geese, and the rate of increase relative to selenium was greater in goslings than in adults. The activity of glutathione reductase was greatest in the plasma of goslings and was greater in molting adults than incubating females but was not significantly correlated with selenium in the blood of adults or goslings. Incubating female emperor geese had high selenium concentrations in their blood, accompanied by increased glutathione peroxidase activity consistent with early oxidative stress. These findings indicate that further study of the effects of selenium exposure, particularly on reproductive success, is warranted in this species.

  17. Blood selenium concentrations and enzyme activities related to glutathione metabolism in wild emperor geese

    USGS Publications Warehouse

    Franson, J.C.; Hoffman, D.J.; Schmutz, J.A.

    2002-01-01

    In 1998, we collected blood samples from 63 emperor geese (Chen canagica) on their breeding grounds on the Yukon-Kuskokwim Delta (YKD) in western Alaska, USA. We studied the relationship between selenium concentrations in whole blood and the activities of glutathione peroxidase and glutathione reductase in plasma. Experimental studies have shown that plasma activities of these enzymes are useful biomarkers of selenium-induced oxidative stress, but little information is available on their relationship to selenium in the blood of wild birds. Adult female emperor geese incubating their eggs in mid-June had a higher mean concentration of selenium in their blood and a greater activity of glutathione peroxidase in their plasma than adult geese or goslings that were sampled during the adult flight feathera??molting period in late July and early August. Glutathione peroxidase activity was positively correlated with the concentration of selenium in the blood of emperor geese, and the rate of increase relative to selenium was greater in goslings than in adults. The activity of glutathione reductase was greatest in the plasma of goslings and was greater in molting adults than incubating females but was not significantly correlated with selenium in the blood of adults or goslings. Incubating female emperor geese had high selenium concentrations in their blood, accompanied by increased glutathione peroxidase activity consistent with early oxidative stress. These findings indicate that further study of the effects of selenium exposure, particularly on reproductive success, is warranted in this species.

  18. Space Use of African Wild Dogs in Relation to Other Large Carnivores

    PubMed Central

    Darnell, Angela M.; Graf, Jan A.; Somers, Michael J.; Slotow, Rob; Szykman Gunther, Micaela

    2014-01-01

    Interaction among species through competition is a principle process structuring ecological communities, affecting behavior, distribution, and ultimately the population dynamics of species. High competition among large African carnivores, associated with extensive diet overlap, manifests in interactions between subordinate African wild dogs (Lycaon pictus) and dominant lions (Panthera leo) and spotted hyenas (Crocuta crocuta). Using locations of large carnivores in Hluhluwe-iMfolozi Park, South Africa, we found different responses from wild dogs to their two main competitors. Wild dogs avoided lions, particularly during denning, through a combination of spatial and temporal avoidance. However, wild dogs did not exhibit spatial or temporal avoidance of spotted hyenas, likely because wild dog pack sizes were large enough to adequately defend their kills. Understanding that larger carnivores affect the movements and space use of other carnivores is important for managing current small and fragmented carnivore populations, especially as reintroductions and translocations are essential tools used for the survival of endangered species, as with African wild dogs. PMID:24896638

  19. PCR-based INDEL markers co-dominant between Oryza sativa, japonica cultivars and closely-related wild Oryza species

    PubMed Central

    Niihama, Mitsuru; Mochizuki, Misato; Kurata, Nori; Nonomura, Ken-Ichi

    2015-01-01

    Wild relatives genetically close to cultivars are precious genetic resources for plant breeding. Oryza rufipogon, O. barthii, O. glumaepatula, O. meridionalis and O. longistaminata are such wild species, and are also categorized as AA genome species based on their structural similarities. Chromosome segment substitution lines (CSSLs) are a powerful resource in breeding and genetics, and numerous rice CSSLs have been produced. This study aimed to develop DNA markers for evaluation of CSSLs directly by PCR and subsequent gel electrophoresis. We confirmed that up to 155 of 188 markers developed for detection of japonica-indica INDELs could also detect INDELs between rice cultivars and wild AA-species accessions. Percentages of applicable markers were higher in O. rufipogon accessions (61.7 to 85.6%), and lower in accessions of other four AA species (39.8 to 51.4%). These markers were distributed throughout the rice chromosomes, and will be useful for genotyping of CSSLs and other genetic resources derived from crosses between rice cultivars and closely related wild species. PMID:26366120

  20. CARDIOLIPIN CONTENT OF WILD TYPE AND MUTANT YEASTS IN RELATION TO MITOCHONDRIAL FUNCTION AND DEVELOPMENT

    PubMed Central

    Jakovcic, S.; Getz, G. S.; Rabinowitz, M.; Jakob, H.; Swift, H.

    1971-01-01

    The phospholipid composition of various strains of the yeast, Saccharomyces cerevisiae, and several of their derived mitochondrial mutants grown under conditions designed to induce variations in the complement of mitochondrial membranes has been examined. Wild type and petite (cytoplasmic respiratory deficient) yeasts were fractionated into various subcellular fractions, which were monitored by electron microscopy and analyzed for cytochrome oxidase (in wild type) and phospholipid composition. 90% or more of the phospholipid, cardiolipin was found in the mitochondrial membranes of wild type and petite yeast. Cardiolipin content differed markedly under various growth conditions. Stationary yeast grown in glucose had better developed mitochondria and more cardiolipin than repressed log phase yeast. Aerobic yeast contained more cardiolipin than anaerobic yeast. Respiration-deficient cytoplasmic mitochondrial mutants, both suppressive and neutral, contained less cardiolipin than corresponding wild types. A chromosomal mutant lacking respiratory function had normal cardiolipin content. Log phase cells grown in galactose and lactate, which do not readily repress the development of mitochondrial membranes, contained as much cardiolipin as stationary phase cells grown in glucose. Cytoplasmic mitochondrial mutants respond to changes in the glucose concentration of the growth medium by variations in their cardiolipin content in the same way as wild type yeast does under similar growth conditions. It is concluded that cardiolipin content of yeast is correlated with, and is a good indicator of, the state of development of mitochondrial membrane. PMID:4322761

  1. THE TAXONOMY OF TOMATOES: A REVISION OF WILD TOMATOES (SOLANUM L. SECTION LYCOPERSICON (MILL.) WETTST.) AND THEIR OUTGROUP RELATIVES (SOLANUM SECTIONS JUGLANDIFOLIUM (RYDB.) CHILD AND LYCOPERSICOIDES (CHILD) PERALTA)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The cultivated tomato arose from wild species relatives that grow in South America. Many of these wild species are used as breeding stock to improve the disease resistances and agronomic traits of the cultivated tomato. This publication is a monograph of the cultivated species and its relatives. It ...

  2. Quantifying heritable variation in fitness-related traits of wild, farmed and hybrid Atlantic salmon families in a wild river environment.

    PubMed

    Reed, T E; Prodöhl, P; Hynes, R; Cross, T; Ferguson, A; McGinnity, P

    2015-08-01

    Farmed fish are typically genetically different from wild conspecifics. Escapees from fish farms may contribute one-way gene flow from farm to wild gene pools, which can depress population productivity, dilute local adaptations and disrupt coadapted gene complexes. Here, we reanalyse data from two experiments (McGinnity et al., 1997, 2003) where performance of Atlantic salmon (Salmo salar) progeny originating from experimental crosses between farm and wild parents (in three different cohorts) were measured in a natural stream under common garden conditions. Previous published analyses focussed on group-level differences but did not account for pedigree structure, as we do here using modern mixed-effect models. Offspring with one or two farm parents exhibited poorer survival in their first and second year of life compared with those with two wild parents and these group-level inferences were robust to excluding outlier families. Variation in performance among farm, hybrid and wild families was generally similar in magnitude. Farm offspring were generally larger at all life stages examined than wild offspring, but the differences were moderate (5-20%) and similar in magnitude in the wild versus hatchery environments. Quantitative genetic analyses conducted using a Bayesian framework revealed moderate heritability in juvenile fork length and mass and positive genetic correlations (>0.85) between these morphological traits. Our study confirms (using more rigorous statistical techniques) previous studies showing that offspring of wild fish invariably have higher fitness and contributes fresh insights into family-level variation in performance of farm, wild and hybrid Atlantic salmon families in the wild. It also adds to a small, but growing, number of studies that estimate key evolutionary parameters in wild salmonid populations. Such information is vital in modelling the impacts of introgression by escaped farm salmon. PMID:25920670

  3. Genetic variation in historical and modern apple cultivars compared to wild relatives

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Plant domestication is generally modeled as a scenario wherein strong artificial selection is applied to a small subset of the population of a wild species. The result is that the domesticated species exhibits a genome-wide reduction in genetic variation, referred to as a genetic bottleneck. This ...

  4. Broadening the Genetic Base of Sugar Beet: Introgression from Wild Relatives.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Sugar beet is, perhaps, the first to be developed at a time when modern genetic principles were becoming understood. It was developed in the late 1700s from white fodder beet; therefore, the genetic base of sugar beet has been thought to be narrower than many open-pollinated crops.. The wild sea b...

  5. Differential Expression of Salt Stress-related Genes in Wild Beta vulgaris

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Differential display reverse transcription (DDRT) technique was used to detect differentially expressed genes for wild Beta vulgaris in response to salt stress. Two month-old seedlings were treated with 250 mM Na for 1H, 10H and untreated seedlings were used as controls. A group of differentially di...

  6. A Test of Taxonomic Predictivity: Resistance to Early Blight in Wild Relatives of Cultivated Potato

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Early blight (caused by the foliar fungus Alternaria solani) is a widespread disease that appears annually in potato crops worldwide. This is our second study of a disease resistance in wild potatoes to test the assumed ability of taxonomy to predict the presence of traits in a group for which the t...

  7. The genomics of wild yeast populations sheds light on the domestication of man's best (micro) friend.

    PubMed

    Eberlein, Chris; Leducq, Jean-Baptiste; Landry, Christian R

    2015-11-01

    The domestication of plants, animals and microbes by humans are the longest artificial evolution experiments ever performed. The study of these long-term experiments can teach us about the genomics of adaptation through the identification of the genetic bases underlying the traits favoured by humans. In laboratory evolution, the characterization of the molecular changes that evolved specifically in some lineages is straightforward because the ancestors are readily available, for instance in the freezer. However, in the case of domesticated species, the ancestor is often missing, which leads to the necessity of going back to nature in order to infer the most likely ancestral state. Significant and relatively recent examples of this approach include wolves as the closest wild relative to domestic dogs (Axelsson et al. 2013) and teosinte as the closest relative to maize (reviewed in Hake & Ross-Ibarra 2015). In both cases, the joint analysis of domesticated lineages and their wild cousins has been key in reconstructing the molecular history of their domestication. While the identification of closest wild relatives has been done for many plants and animals, these comparisons represent challenges for micro-organisms. This has been the case for the budding yeast Saccharomyces cerevisiae, whose natural ecological niche is particularly challenging to define. For centuries, this unicellular fungus has been the cellular factory for wine, beer and bread crafting, and currently for bioethanol and drug production. While the recent development of genomics has lead to the identification of many genetic elements associated with important wine characteristics, the historical origin of some of the domesticated wine strains has remained elusive due to the lack of knowledge of their close wild relatives. In this issue of Molecular Ecology, Almeida et al. (2015) identified what is to date the closest known wild population of the wine yeast. This population is found associated with oak trees in Europe, presumably its natural host. Using population genomics analyses, Almeida and colleagues discovered that the initial divergence between natural and domesticated wine yeasts in the Mediterranean region took place around the early days of wine production. Surprisingly, genomic regions that are key to wine production today appeared not to be derived from these natural populations but from genes gained from other yeast species. PMID:26509691

  8. Speciation and domestication in maize and its wild relatives: evidence from the globulin-1 gene.

    PubMed Central

    Hilton, H; Gaut, B S

    1998-01-01

    The grass genus Zea contains the domesticate maize and several wild taxa indigenous to Central and South America. Here we study the genetic consequences of speciation and domestication in this group by sampling DNA sequences from four taxa-maize (Zea mays ssp. mays), its wild progenitor (Z. mays ssp. parviglumis), a more distant species within the genus (Z. luxurians), and a representative of the sister genus (Tripsacum dactyloides). We sampled a total of 26 sequences from the glb1 locus, which encodes a nonessential seed storage protein. Within the Zea taxa sampled, the progenitor to maize contains the most sequence diversity. Maize contains 60% of the level of genetic diversity of its progenitor, and Z. luxurians contains even less diversity (32% of the level of diversity of Z. mays ssp. parviglumis). Sequence variation within the glb1 locus is consistent with neutral evolution in all four taxa. The glb1 data were combined with adh1 data from a previous study to make inferences about the population genetic histories of these taxa. Comparisons of sequence data between the two morphologically similar wild Zea taxa indicate that the species diverged approximately 700, 000 years ago from a common ancestor of intermediate size to their present populations. Conversely, the domestication of maize was a recent event that could have been based on a very small number of founding individuals. Maize retained a substantial proportion of the genetic variation of its progenitor through this founder event, but diverged rapidly in morphology. PMID:9755214

  9. Wide Variability in Seed Characteristics, Kernel Quality, and Zein Profiles Among Diverse Maize Inbreds, Landraces, and Teosinte

    Technology Transfer Automated Retrieval System (TEKTRAN)

    All crop species have been domesticated from their wild relatives, and geneticists are just now beginning to understand the genetic consequences of artificial (human) selection on agronomic traits that are relevant today. The major consequence is severe reduction in genetic diversity for genes unde...

  10. Using Satellite Maps and Related Spatial Data Sets to Identify Remaining Wild Areas of the Eastern US

    NASA Astrophysics Data System (ADS)

    Jantz, P.; Goetz, S. J.

    2005-12-01

    Roadless and wild areas of 12 states comprising the eastern United States were derived from a combination of satellite image data products (tree cover, urbanized areas, etc), a road network database, and related spatial data sets. These remote areas were defined as having greater than 60 percent tree cover of at least ~5000 acre (2000 ha) contiguous tracts situated more than 500m from any road. Detailed maps of the region were produced and then overlaid with information on existing parks, protected areas, easements, and state and national forest land boundaries. Statistics were tabulated on a regional and statewide basis, and are presented together with the derived map. A total of 1468 wild areas were mapped in the study area. Forty three percent of those were in areas offering some form of protected land disignation, but only 548 (37 percent) of the areas were at least 50 percent protected. Many of the areas identified as roadless wild lands not known to be currently protected in any form were, not surprisingly, located in the states of Maine and West Virginia. Other significant lands meeting the criteria were identified in New York and Tennessee and, to a lesser extent, Pennsylvania, Vermont and New Hampshire. This work forms, as far as we know, the first quantitative assessment across the region using consistent data sets and accepted national criteria for roadless areas. It underscores the urgent need for reserving some of the remaining wild lands to protect forest resources and biological diversity before exurban development encroaches of the last of these unique resource lands of the East. Our approach may also provide acceptable criteria for a national assessment, and results are discussed in this context.

  11. Gastrointestinal parasites in relation to host traits and group factors in wild meerkats Suricata suricatta.

    PubMed

    Leclaire, Sarah; Faulkner, Charles T

    2014-06-01

    Meerkats are one of the most endearing of South African's wildlife celebrities and one of the most highly studied social mammals. However, although parasites are widely recognized as important regulatory factors in animal population, basic knowledge on meerkats' parasites is lacking. Here 100 fresh fecal samples of wild meerkats were examined for the presence of endoparasitic infection. Endoparasitic taxa identified by the presence of eggs or oocysts included Toxocara suricattae, Oxynema suricattae, Pseudandrya suricattae, Cystoisospora sp. and Eimeria sp. Non-specific diagnoses were made for parasites in the Order Strongylida, Order Spirurida and coccidian based on the morphology and size of the eggs and oocysts. The prevalence of infection with T. suricattae and the strongylate species increased with age, while prevalence of coccidia and intensity of infection by the strongylate species increased with decreasing group size, suggesting that stress associated with living in smaller group may increase susceptibility to parasitism. Moreover, parasite communities were more similar between individuals from the same group than between individuals from different groups, suggesting an important role of the environment in parasite infestation. We did not detect any differences between males and females. This study represents the first detailed report of gastrointestinal parasites in wild meerkats, and is a key starting point for future studies on the effect of endoparasite load in the life history of this species. PMID:24560215

  12. Improved herbivore resistance in cultivated tomato with the sesquiterpene biosynthetic pathway from a wild relative

    PubMed Central

    Bleeker, Petra M.; Mirabella, Rossana; Diergaarde, Paul J.; VanDoorn, Arjen; Tissier, Alain; Kant, Merijn R.; Prins, Marcel; de Vos, Martin; Haring, Michel A.; Schuurink, Robert C.

    2012-01-01

    Tomato breeding has been tremendously efficient in increasing fruit quality and quantity but did not focus on improving herbivore resistance. The biosynthetic pathway for the production of 7-epizingiberene in a wild tomato was introduced into a cultivated greenhouse variety with the aim to obtain herbivore resistance. 7-Epizingiberene is a specific sesquiterpene with toxic and repellent properties that is produced and stored in glandular trichomes. We identified 7-epizingiberene synthase (ShZIS) that belongs to a new class of sesquiterpene synthases, exclusively using Z-Z-farnesyl-diphosphate (zFPP) in plastids, probably arisen through neo-functionalization of a common ancestor. Expression of the ShZIS and zFPP synthases in the glandular trichomes of cultivated tomato resulted in the production of 7-epizingiberene. These tomatoes gained resistance to several herbivores that are pests of tomato. Hence, introduction of this sesquiterpene biosynthetic pathway into cultivated tomatoes resulted in improved herbivore resistance. PMID:23169639

  13. Improved herbivore resistance in cultivated tomato with the sesquiterpene biosynthetic pathway from a wild relative.

    PubMed

    Bleeker, Petra M; Mirabella, Rossana; Diergaarde, Paul J; VanDoorn, Arjen; Tissier, Alain; Kant, Merijn R; Prins, Marcel; de Vos, Martin; Haring, Michel A; Schuurink, Robert C

    2012-12-01

    Tomato breeding has been tremendously efficient in increasing fruit quality and quantity but did not focus on improving herbivore resistance. The biosynthetic pathway for the production of 7-epizingiberene in a wild tomato was introduced into a cultivated greenhouse variety with the aim to obtain herbivore resistance. 7-Epizingiberene is a specific sesquiterpene with toxic and repellent properties that is produced and stored in glandular trichomes. We identified 7-epizingiberene synthase (ShZIS) that belongs to a new class of sesquiterpene synthases, exclusively using Z-Z-farnesyl-diphosphate (zFPP) in plastids, probably arisen through neo-functionalization of a common ancestor. Expression of the ShZIS and zFPP synthases in the glandular trichomes of cultivated tomato resulted in the production of 7-epizingiberene. These tomatoes gained resistance to several herbivores that are pests of tomato. Hence, introduction of this sesquiterpene biosynthetic pathway into cultivated tomatoes resulted in improved herbivore resistance. PMID:23169639

  14. VpWRKY3, a biotic and abiotic stress-related transcription factor from the Chinese wild Vitis pseudoreticulata.

    PubMed

    Zhu, Ziguo; Shi, Jiangli; Cao, Jiangling; He, Mingyang; Wang, Yuejin

    2012-11-01

    Chinese wild grapevine Vitis pseudoreticulata accession 'Baihe-35-1' is identified as the precious resource with multiple resistances to pathogens. A directional cDNA library was constructed from the young leaves inoculated with Erysiphe necator. A total of 3,500 clones were sequenced, yielding 1,727 unigenes. Among them, 762 unigenes were annotated and classified into three classes, respectively, using Gene Ontology, including 22 ESTs related to transcription regulator activity. A novel WRKY transcription factor was isolated from the library, and designated as VpWRKY3 (GenBank Accession No. JF500755). The full-length cDNA is 1,280 bp, encoding a WRKY protein of 320 amino acids. VpWRKY3 is localized to nucleus and functions as a transcriptional activator. QRT-PCR analysis showed that the VpWRKY3 specifically accumulated in response to pathogen, salicylic acid, ethylene and drought stress. Overexpression of VpWRKY3 in tobacco increased the resistance to Ralstonia solanacearum, indicating that VpWRKY3 participates in defense response. Furthermore, VpWRKY3 is also involved in abscisic acid signal pathway and salt stress. This experiment provided an important basis for understanding the defense mechanisms mediated by WRKY genes in China wild grapevine. Generation of the EST collection from the cDNA library provided valuable information for the grapevine breeding. Key message We constructed a cDNA library from Chinese wild grapevine leaves inoculated with powdery mildew. VpWRKY3 was isolated and demonstrated that it was involved in biotic and abiotic stress responses. PMID:22847334

  15. Food sharing is linked to urinary oxytocin levels and bonding in related and unrelated wild chimpanzees

    PubMed Central

    Wittig, Roman M.; Crockford, Catherine; Deschner, Tobias; Langergraber, Kevin E.; Ziegler, Toni E.; Zuberbühler, Klaus

    2014-01-01

    Humans excel in cooperative exchanges between unrelated individuals. Although this trait is fundamental to the success of our species, its evolution and mechanisms are poorly understood. Other social mammals also build long-term cooperative relationships between non-kin, and recent evidence shows that oxytocin, a hormone involved in parent–offspring bonding, is likely to facilitate non-kin as well as kin bonds. In a population of wild chimpanzees, we measured urinary oxytocin levels following a rare cooperative event—food sharing. Subjects showed higher urinary oxytocin levels after single food-sharing events compared with other types of social feeding, irrespective of previous social bond levels. Also, urinary oxytocin levels following food sharing were higher than following grooming, another cooperative behaviour. Therefore, food sharing in chimpanzees may play a key role in social bonding under the influence of oxytocin. We propose that food-sharing events co-opt neurobiological mechanisms evolved to support mother–infant bonding during lactation bouts, and may act as facilitators of bonding and cooperation between unrelated individuals via the oxytocinergic system across social mammals. PMID:24430853

  16. Characterisation and Analysis of the Aegilops sharonensis Transcriptome, a Wild Relative of Wheat in the Sitopsis Section

    PubMed Central

    Bouyioukos, Costas; Moscou, Matthew J.; Champouret, Nicolas; Hernández-Pinzón, Inmaculada; Ward, Eric R.; Wulff, Brande B. H.

    2013-01-01

    Aegilopssharonensis Eig (Sharon goatgrass) is a wild diploid relative of wheat within the Sitopsis section of Aegilops. This species represents an untapped reservoir of genetic diversity for traits of agronomic importance, especially as a source of novel disease resistance. To gain a foothold in this genetic resource, we sequenced the cDNA from leaf tissue of two geographically distinct Ae. sharonensis accessions (1644 and 2232) using the 454 Life Sciences platform. We compared the results of two different assembly programs using different parameter sets to generate 13 distinct assemblies in an attempt to maximize representation of the gene space in de novo transcriptome assembly. The most sensitive assembly (71,029 contigs; N50 674 nts) retrieved 18,684 unique best reciprocal BLAST hits (BRBH) against six previously characterised grass proteomes while the most specific assembly (30,609 contigs; N50 815 nts) retrieved 15,687 BRBH. We combined these two assemblies into a set of 62,243 non-redundant sequences and identified 139 belonging to plant disease resistance genes of the nucleotide binding leucine-rich repeat class. Based on the non-redundant sequences, we predicted 37,743 single nucleotide polymorphisms (SNP), equivalent to one per 1,142 bp. We estimated the level of heterozygosity as 1.6% in accession 1644 and 30.1% in 2232. The Ae. sharonensis leaf transcriptome provides a rich source of sequence and SNPs for this wild wheat relative. These sequences can be used with existing monocot genome sequences and EST sequence collections (e.g. barley, Brachypodium, wheat, rice, maize and Sorghum) to assist with genetic and physical mapping and candidate gene identification in Ae. sharonensis. These resources provide an initial framework to further build on and characterise the genetic and genomic structure of Ae. sharonensis. PMID:23951332

  17. Domestication and the Mitochondrial Genome: Comparing Patterns and Rates of Molecular Evolution in Domesticated Mammals and Birds and Their Wild Relatives

    PubMed Central

    Moray, Camile; Lanfear, Robert; Bromham, Lindell

    2014-01-01

    Studies of domesticated animals have led to the suggestion that domestication could have significant effects on patterns of molecular evolution. In particular, analyses of mitochondrial genome sequences from domestic dogs and yaks have yielded higher ratios of non-synonymous to synonymous substitutions in the domesticated lineages than in their wild relatives. These results are important because they imply that changes to selection or population size operating over a short timescale can cause significant changes to the patterns of mitochondrial molecular evolution. In this study, our aim is to test whether the impact on mitochondrial genome evolution is a general feature of domestication or whether it is specific to particular examples. We test whether domesticated mammals and birds have consistently different patterns of molecular evolution than their wild relatives for 16 phylogenetically independent comparisons of mitochondrial genome sequences. We find no consistent difference in branch lengths or dN/dS between domesticated and wild lineages. We also find no evidence that our failure to detect a consistent pattern is due to the short timescales involved or low genetic distance between domesticated lineages and their wild relatives. However, removing comparisons where the wild relative may also have undergone a bottleneck does reveal a pattern consistent with reduced effective population size in domesticated lineages. Our results suggest that, although some domesticated lineages may have undergone changes to selective regime or effective population size that could have affected mitochondrial evolution, it is not possible to generalize these patterns over all domesticated mammals and birds. PMID:24459286

  18. Domestication and the mitochondrial genome: comparing patterns and rates of molecular evolution in domesticated mammals and birds and their wild relatives.

    PubMed

    Moray, Camile; Lanfear, Robert; Bromham, Lindell

    2014-01-01

    Studies of domesticated animals have led to the suggestion that domestication could have significant effects on patterns of molecular evolution. In particular, analyses of mitochondrial genome sequences from domestic dogs and yaks have yielded higher ratios of non-synonymous to synonymous substitutions in the domesticated lineages than in their wild relatives. These results are important because they imply that changes to selection or population size operating over a short timescale can cause significant changes to the patterns of mitochondrial molecular evolution. In this study, our aim is to test whether the impact on mitochondrial genome evolution is a general feature of domestication or whether it is specific to particular examples. We test whether domesticated mammals and birds have consistently different patterns of molecular evolution than their wild relatives for 16 phylogenetically independent comparisons of mitochondrial genome sequences. We find no consistent difference in branch lengths or dN/dS between domesticated and wild lineages. We also find no evidence that our failure to detect a consistent pattern is due to the short timescales involved or low genetic distance between domesticated lineages and their wild relatives. However, removing comparisons where the wild relative may also have undergone a bottleneck does reveal a pattern consistent with reduced effective population size in domesticated lineages. Our results suggest that, although some domesticated lineages may have undergone changes to selective regime or effective population size that could have affected mitochondrial evolution, it is not possible to generalize these patterns over all domesticated mammals and birds. PMID:24459286

  19. Wild soybean roots depend on specific transcription factors and oxidation reduction related genesin response to alkaline stress.

    PubMed

    DuanMu, Huizi; Wang, Yang; Bai, Xi; Cheng, Shufei; Deyholos, Michael K; Wong, Gane Ka-Shu; Li, Dan; Zhu, Dan; Li, Ran; Yu, Yang; Cao, Lei; Chen, Chao; Zhu, Yanming

    2015-11-01

    Soil alkalinity is an important environmental problem limiting agricultural productivity. Wild soybean (Glycine soja) shows strong alkaline stress tolerance, so it is an ideal plant candidate for studying the molecular mechanisms of alkaline tolerance and identifying alkaline stress-responsive genes. However, limited information is available about G. soja responses to alkaline stress on a genomic scale. Therefore, in the present study, we used RNA sequencing to compare transcript profiles of G. soja root responses to sodium bicarbonate (NaHCO3) at six time points, and a total of 68,138,478 pairs of clean reads were obtained using the Illumina GAIIX. Expression patterns of 46,404?G. soja genes were profiled in all six samples based on RNA-seq data using Cufflinks software. Then, t12 transcription factors from MYB, WRKY, NAC, bZIP, C2H2, HB, and TIFY families and 12 oxidation reduction related genes were chosen and verified to be induced in response to alkaline stress by using quantitative real-time polymerase chain reaction (qRT-PCR). The GO functional annotation analysis showed that besides "transcriptional regulation" and "oxidation reduction," these genes were involved in a variety of processes, such as "binding" and "response to stress." This is the first comprehensive transcriptome profiling analysis of wild soybean root under alkaline stress by RNA sequencing. Our results highlight changes in the gene expression patterns and identify a set of genes induced by NaHCO3 stress. These findings provide a base for the global analyses of G. soja alkaline stress tolerance mechanisms. PMID:25874911

  20. Study of oseltamivir and zanamivir resistance-related mutations in influenza viruses isolated from wild mallards in Sweden.

    PubMed

    Orozovic, Goran; Orozovic, Kanita; Järhult, Josef D; Olsen, Björn

    2014-01-01

    Resistance to neuraminidase inhibitors (NAIs) is a growing problem in battle against influenza A virus. However, little is known about the resistance of viruses isolated from dabbling ducks, the natural reservoir of the influenza virus. To our knowledge, no low-pathogenic avian influenza (LPAI) virus resistant to NAIs has been detected. The aim of this study was to investigate mallard isolates of influenza A virus previously identified to carry oseltamivir carboxylate (OC) or zanamivir (ZA) resistance-related mutations. In this work, 21 viruses belonging to the N1, N3, N6 and N9 subtypes were analyzed using a colorimetric NA inhibition assay. The results of assay showed no NAIs-resistant phenotype for any of the viruses. The R118K mutation was the most recurrent, as it was observed in all subtypes except for N6. IC50 values confirmed the differences in sensitivity to OC or ZA observed in the N1 and N2 groups of NAs. Furthermore, both wild types (WTs) in the N6 and one WT in the N9 subtype were less sensitive to ZA than were genotypically related mutants with R152K and R118K change in the respective subtypes. This may indicate that these and probably even other NAIs resistance-related mutations found in our virus collection were not induced by NAIs residuals in the environment and that the impact of such mutations in an avian influenza could be dependent on subtype, strain and host species. PMID:24558492

  1. Molecular relationships between Australian annual wild rice, Oryza meridionalis, and two related perennial forms

    PubMed Central

    2013-01-01

    Background The perennial, Oryza rufipogon distributed from Asia to Australia and the annual O. meridionalis indigenous to Australia are AA genome species in the Oryza. However, recent research has demonstrated that the Australian AA genome perennial populations have maternal genomes more closely related to those of O. meridionalis than to those found in Asian populations of O. rufipogon suggesting that the Australian perennials may represent a new distinct gene pool for rice. Results Analysis of an Oryza core collection covering AA genome species from Asia to Oceania revealed that some Oceania perennials had organellar genomes closely related to that of O meridionalis (meridionalis-type). O. rufipogon accessions from New Guinea carried either the meridionalis-type or rufirpogon-type (like O. rufipogon) organellar genomes. Australian perennials carried only the meridionalis-type organellar genomes when accompanied by the rufipogon-type nuclear genome. New accessions were collected to better characterize the Australian perennials, and their life histories (annual or perennial) were confirmed by field observations. All of the material collected carried only meridionalis-type organellar genomes. However, there were two distinct perennial groups. One of them carried an rufipogon-type nuclear genome similar to the Australian O. rufipogon in the core collection and the other carried an meridionalis-type nuclear genome not represented in the existing collection. Morphologically the rufipogon-type shared similarity with Asian O. rufipogon. The meridionalis-type showed some similarities to O. meridionalis such as the short anthers usually characteristic of annual populations. However, the meridionalis-type perennial was readily distinguished from O. meridionalis by the presence of a larger lemma and higher number of spikelets. Conclusion Analysis of current accessions clearly indicated that there are two distinct types of Australian perennials. Both of them differed genetically from Asian O. rufipogon. One lineage is closely related to O. meridionalis and another to Asian O. rufipogon. The first was presumed to have evolved by divergence from O. meridionalis becoming differentiated as a perennial species in Australia indicating that it represents a new gene pool. The second, apparently derived from Asian O. rufipogon, possibly arrived in Australia later. PMID:24280095

  2. Distributions, ex situ conservation priorities, and genetic resource potential of crop wild relatives of sweetpotato [Ipomoea batatas (L.) Lam., I. series Batatas].

    PubMed

    Khoury, Colin K; Heider, Bettina; Castañeda-Álvarez, Nora P; Achicanoy, Harold A; Sosa, Chrystian C; Miller, Richard E; Scotland, Robert W; Wood, John R I; Rossel, Genoveva; Eserman, Lauren A; Jarret, Robert L; Yencho, G C; Bernau, Vivian; Juarez, Henry; Sotelo, Steven; de Haan, Stef; Struik, Paul C

    2015-01-01

    Crop wild relatives of sweetpotato [Ipomoea batatas (L.) Lam., I. series Batatas] have the potential to contribute to breeding objectives for this important root crop. Uncertainty in regard to species boundaries and their phylogenetic relationships, the limited availability of germplasm with which to perform crosses, and the difficulty of introgression of genes from wild species has constrained their utilization. Here, we compile geographic occurrence data on relevant sweetpotato wild relatives and produce potential distribution models for the species. We then assess the comprehensiveness of ex situ germplasm collections, contextualize these results with research and breeding priorities, and use ecogeographic information to identify species with the potential to contribute desirable agronomic traits. The fourteen species that are considered the closest wild relatives of sweetpotato generally occur from the central United States to Argentina, with richness concentrated in Mesoamerica and in the extreme Southeastern United States. Currently designated species differ among themselves and in comparison to the crop in their adaptations to temperature, precipitation, and edaphic characteristics and most species also show considerable intraspecific variation. With 79% of species identified as high priority for further collecting, we find that these crop genetic resources are highly under-represented in ex situ conservation systems and thus their availability to breeders and researchers is inadequate. We prioritize taxa and specific geographic locations for further collecting in order to improve the completeness of germplasm collections. In concert with enhanced conservation of sweetpotato wild relatives, further taxonomic research, characterization and evaluation of germplasm, and improving the techniques to overcome barriers to introgression with wild species are needed in order to mobilize these genetic resources for crop breeding. PMID:25954286

  3. Distributions, ex situ conservation priorities, and genetic resource potential of crop wild relatives of sweetpotato [Ipomoea batatas (L.) Lam., I. series Batatas

    PubMed Central

    Khoury, Colin K.; Heider, Bettina; Castañeda-Álvarez, Nora P.; Achicanoy, Harold A.; Sosa, Chrystian C.; Miller, Richard E.; Scotland, Robert W.; Wood, John R. I.; Rossel, Genoveva; Eserman, Lauren A.; Jarret, Robert L.; Yencho, G. C.; Bernau, Vivian; Juarez, Henry; Sotelo, Steven; de Haan, Stef; Struik, Paul C.

    2015-01-01

    Crop wild relatives of sweetpotato [Ipomoea batatas (L.) Lam., I. series Batatas] have the potential to contribute to breeding objectives for this important root crop. Uncertainty in regard to species boundaries and their phylogenetic relationships, the limited availability of germplasm with which to perform crosses, and the difficulty of introgression of genes from wild species has constrained their utilization. Here, we compile geographic occurrence data on relevant sweetpotato wild relatives and produce potential distribution models for the species. We then assess the comprehensiveness of ex situ germplasm collections, contextualize these results with research and breeding priorities, and use ecogeographic information to identify species with the potential to contribute desirable agronomic traits. The fourteen species that are considered the closest wild relatives of sweetpotato generally occur from the central United States to Argentina, with richness concentrated in Mesoamerica and in the extreme Southeastern United States. Currently designated species differ among themselves and in comparison to the crop in their adaptations to temperature, precipitation, and edaphic characteristics and most species also show considerable intraspecific variation. With 79% of species identified as high priority for further collecting, we find that these crop genetic resources are highly under-represented in ex situ conservation systems and thus their availability to breeders and researchers is inadequate. We prioritize taxa and specific geographic locations for further collecting in order to improve the completeness of germplasm collections. In concert with enhanced conservation of sweetpotato wild relatives, further taxonomic research, characterization and evaluation of germplasm, and improving the techniques to overcome barriers to introgression with wild species are needed in order to mobilize these genetic resources for crop breeding. PMID:25954286

  4. Bioactive compounds extracted from Indian wild legume seeds: antioxidant and type II diabetes-related enzyme inhibition properties.

    PubMed

    Gautam, Basanta; Vadivel, Vellingiri; Stuetz, Wolfgang; Biesalski, Hans K

    2012-03-01

    Seven different wild legume seeds (Acacia leucophloea, Bauhinia variegata, Canavalia gladiata, Entada scandens, Mucuna pruriens, Sesbania bispinosa and Tamarindus indica) from various parts of India were analyzed for total free phenolics, l-Dopa (l-3,4 dihydroxyphenylalanine), phytic acid and their antioxidant capacity (ferric-reducing antioxidant power [FRAP] and 2,2-diphenyl-1-picrylhydrazyl [DPPH] assay) and type II diabetes-related enzyme inhibition activitiy (?-amylase). S. bispinosa had the highest content in both total free phenolics and l-Dopa, and relatively low phytic acid when compared with other seeds. Phytic acid content, being highest in E. scandens, M. pruriens and T. indica, was highly predictive for FRAP (r = 0.47, p < 0.05) and DPPH (r = 0.66, p < 0.001) assays. The phenolic extract from T. indica and l-Dopa extract from E. scandens showed significantly higher FRAP values among others. All seed extracts demonstrated a remarkable reducing power (7-145 mM FeSO4 per mg extract), DPPH radical scavenging activity (16-95%) and ?-amylase enzyme inhibition activity (28-40%). PMID:21970446

  5. Distributions, ex situ conservation priorities, and genetic resources potential of crop wild relatives of sweeetpotato (Ipomoea batatas (L.) Lam. I. series Batatas)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Crop wild relatives (CWR) of sweetpotato [Ipomoea batatas (L.) Lam., I. series Batatas] have the potential to contribute to breeding objectives for this important root crop. Uncertainty in regard to species boundaries and their phylogenetic relationships, and the limited availability of germplasm wi...

  6. REVISION OF WILD TOMATOES (SOLANUM L. SECTION LYCOPERSICON (MILL.) WETTST.) AND THEIR OUTGROUP RELATIVES IN SECTION JUGLANDIFOLIUM (RYDB.) CHILD AND SECTION LYCOPERSICOIDES (CHILD) PERALTA

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Solanum section Lycopersicon includes the cultivated tomato (Solanum lycopersicum) and 12 wild relatives, endemic to western South America from Ecuador to northern Chile, and with two endemic species in the Galápagos Islands; Solanum lycopersicum weedy escaped forms are distributed worldwide. Sister...

  7. The Wild Bunch.

    ERIC Educational Resources Information Center

    Booth, Bibi; Brook, Richard; Tisdale, Mary; Wooster, Elizabeth

    2001-01-01

    Summarizes the history of wild horses in North America and explains the social structure of horses. Discusses issues related to wildlife management. Presents activities for classroom use and includes a list of references and resources. (YDS)

  8. Identification of Novel and Conserved miRNAs from Extreme Halophyte, Oryza coarctata, a Wild Relative of Rice

    PubMed Central

    Mondal, Tapan Kumar; Ganie, Showkat Ahmad; Debnath, Ananda Bhusan

    2015-01-01

    Oryza coarctata, a halophyte and wild relative of rice, is grown normally in saline water. MicroRNAs (miRNAs) are non-coding RNAs that play pivotal roles in every domain of life including stress response. There are very few reports on the discovery of salt-responsive miRNAs from halophytes. In this study, two small RNA libraries, one each from the control and salt-treated (450 mM NaCl for 24 h) leaves of O. coarctata were sequenced, which yielded 338 known and 95 novel miRNAs. Additionally, we used publicly available transcriptomics data of O. coarctata which led to the discovery of additional 48 conserved miRNAs along with their pre-miRNA sequences through in silico analysis. In total, 36 known and 7 novel miRNAs were up-regulated whereas, 12 known and 7 novel miRNAs were down-regulated under salinity stress. Further, 233 and 154 target genes were predicted for 48 known and 14 novel differentially regulated miRNAs respectively. These targets with the help of gene ontology analysis were found to be involved in several important biological processes that could be involved in salinity tolerance. Relative expression trends of majority of the miRNAs as detected by real time-PCR as well as predicted by Illumina sequencing were found to be coherent. Additionally, expression of most of the target genes was negatively correlated with their corresponding miRNAs. Thus, the present study provides an account of miRNA-target networking that is involved in salinity adaption of O. coarctata. PMID:26506249

  9. Hood River Steelhead Genetics Study; Relative Reproductive Success of Hatchery and Wild Steelhead in the Hood River, Final Report 2002-2003.

    SciTech Connect

    Blouin, Michael

    2003-05-01

    There is a considerable interest in using hatcheries to speed the recovery of wild populations. The Bonneville Power Administration (BPA), under the authority of the Northwest Power Planning Act, is currently funding several hatchery programs in the Columbia Basin as off-site mitigation for impacts to salmon and steelhead caused by the Columbia River federal hydropower system. One such project is located on the Hood River, an Oregon tributary of the Columbia. These hatchery programs cost the region millions of dollars. However, whether such programs actually improve the status of wild fish remains untested. The goal of this project was to evaluate the effectiveness of the Hood River hatchery program as required by the Northwest Power Planning Council Fish and Wildlife Program, by the Oregon Plan for Coastal Salmonids, by NMFS ESA Section 4(d) rulings, and by the Oregon Department of Fish and Wildlife (ODFW) Wild Fish Management Policy (OAR 635-07-525 through 529) and the ODFW Hatchery Fish Gene Resource Management Policy (OAR 635-07-540 through 541). The Hood River supports two populations of steelhead, a summer run and a winter run. They spawn only above the Powerdale Dam, which is a complete barrier to all salmonids. Since 1991 every adult passed above the dam has been measured, cataloged and sampled for scales. Therefore, we have a DNA sample from every adult steelhead that went over the dam to potentially spawn in the Hood River from 1991 to the present. Similar numbers of hatchery and wild fish have been passed above the dam during the last decade. During the 1990's 'old' domesticated hatchery stocks of each run (multiple generations in the hatchery, out-of-basin origin; hereafter H{sub old}) were phased out, and conservation hatchery programs were started for the purpose of supplementing the two wild populations (hereafter 'new' hatchery stocks, H{sub new}). These samples gave us the unprecedented ability to estimate, via microsatellite-based pedigree analysis, the relative total reproductive success (adult-to-adult production) of hatchery (H{sub old} or H{sub new}) and wild (W) fish for two populations, over multiple brood years. Our analyses of samples from fish that bred in the early to mid 1990's show that fish of 'old' hatchery stocks have much lower total fitness than wild fish (17% to 54% of wild fitness), but that 'new' stocks have fitness that is similar to that of wild fish (ranging from 85% to 108% of wild fitness, depending on parental gender and run year). Therefore, our results show that the decision to phase out the old, out-of-basin stocks and replace them with new, conservation hatchery stocks was well founded. We also conclude that the H{sub new} fish are leaving behind substantial numbers of wild-born offspring. The similar fitnesses of H{sub new} and W fish suggests that wild-born offspring of H{sub new} fish are unlikely to have negative genetic effects on the population when they in turn spawn in the wild. We will test this hypothesis once enough F2 offspring have returned. Another interesting result is that we were unable to match a large fraction of the unclipped, returning fish with parents from their brood year. Furthermore, we were missing more fathers than mothers. Because we sampled almost every possible anadromous parent, these results suggest that nonanadromous trout or precocious parr may be obtaining a substantial number of matings. Substantial reproduction by precocious parr could be one unintended consequence of the hatchery program.

  10. Coordination of Leaf Photosynthesis, Transpiration, and Structural Traits in Rice and Wild Relatives (Genus Oryza)1[W][OA

    PubMed Central

    Giuliani, Rita; Koteyeva, Nuria; Voznesenskaya, Elena; Evans, Marc A.; Cousins, Asaph B.; Edwards, Gerald E.

    2013-01-01

    The genus Oryza, which includes rice (Oryza sativa and Oryza glaberrima) and wild relatives, is a useful genus to study leaf properties in order to identify structural features that control CO2 access to chloroplasts, photosynthesis, water use efficiency, and drought tolerance. Traits, 26 structural and 17 functional, associated with photosynthesis and transpiration were quantified on 24 accessions (representatives of 17 species and eight genomes). Hypotheses of associations within, and between, structure, photosynthesis, and transpiration were tested. Two main clusters of positively interrelated leaf traits were identified: in the first cluster were structural features, leaf thickness (Thickleaf), mesophyll (M) cell surface area exposed to intercellular air space per unit of leaf surface area (Smes), and M cell size; a second group included functional traits, net photosynthetic rate, transpiration rate, M conductance to CO2 diffusion (gm), stomatal conductance to gas diffusion (gs), and the gm/gs ratio. While net photosynthetic rate was positively correlated with gm, neither was significantly linked with any individual structural traits. The results suggest that changes in gm depend on covariations of multiple leaf (Smes) and M cell (including cell wall thickness) structural traits. There was an inverse relationship between Thickleaf and transpiration rate and a significant positive association between Thickleaf and leaf transpiration efficiency. Interestingly, high gm together with high gm/gs and a low Smes/gm ratio (M resistance to CO2 diffusion per unit of cell surface area exposed to intercellular air space) appear to be ideal for supporting leaf photosynthesis while preserving water; in addition, thick M cell walls may be beneficial for plant drought tolerance. PMID:23669746

  11. Distinct Regulatory Changes Underlying Differential Expression of TEOSINTE BRANCHED1-CYCLOIDEA-PROLIFERATING CELL FACTOR Genes Associated with Petal Variations in Zygomorphic Flowers of Petrocosmea spp. of the Family Gesneriaceae1[OPEN

    PubMed Central

    Yang, Xia; Zhao, Xiao-Ge; Li, Chao-Qun; Liu, Jing; Qiu, Zhi-Jing; Dong, Yang; Wang, Yin-Zheng

    2015-01-01

    CYCLOIDEA (CYC)-like genes, belonging to the plant-specific TCP transcription factor family that is named after TEOSINTE BRANCHED1 (TB1) from maize (Zea mays), CYC from Antirrhinum majus, and the PROLIFERATING CELL FACTORS (PCF) from rice (Oryza sativa), have conserved dorsal identity function in patterning floral zygomorphy mainly through specific expression in dorsal petals of a flower. Their expression changes are usually related to morphological diversity of zygomorphic flowers. However, it is still a challenge to elucidate the molecular mechanism underlying their expression differentiation. It is also unknown whether CINCINNATA (CIN)-like TCP genes, locally controlling cell growth and proliferation, are involved in the evolution of floral zygomorphy. To address these questions, we selected two closely related species, i.e. Petrocosmea glabristoma and Petrocosmea sinensis, with distinct petal morphology to conduct expression, hybridization, mutant, and allele-specific expression analyses. The results show that the size change of the dorsal petals between the two species is mainly mediated by the expression differentiation of CYC1C and CYC1D, while the shape variation of all petals is related to the expression change of CIN1. In reciprocal F1 hybrids, the expression of CYC1C, CYC1D, and CIN1 conforms to an additive inheritance mode, consistent with the petal phenotypes of hybrids. Through allele-specific expression analyses, we find that the expression differentiation of these TCP genes is underlain by distinctly different types of regulatory changes. We suggest that highly redundant paralogs with identical expression patterns and interspecific expression differentiation may be controlled by remarkably different regulatory pathways because natural selection may favor different regulatory modifications rather than coding sequence changes of key developmental genes in generating morphological diversity. PMID:26351309

  12. Distinct Regulatory Changes Underlying Differential Expression of TEOSINTE BRANCHED1-CYCLOIDEA-PROLIFERATING CELL FACTOR Genes Associated with Petal Variations in Zygomorphic Flowers of Petrocosmea spp. of the Family Gesneriaceae.

    PubMed

    Yang, Xia; Zhao, Xiao-Ge; Li, Chao-Qun; Liu, Jing; Qiu, Zhi-Jing; Dong, Yang; Wang, Yin-Zheng

    2015-11-01

    CYCLOIDEA (CYC)-like genes, belonging to the plant-specific TCP transcription factor family that is named after TEOSINTE BRANCHED1 (TB1) from maize (Zea mays), CYC from Antirrhinum majus, and the PROLIFERATING CELL FACTORS (PCF) from rice (Oryza sativa), have conserved dorsal identity function in patterning floral zygomorphy mainly through specific expression in dorsal petals of a flower. Their expression changes are usually related to morphological diversity of zygomorphic flowers. However, it is still a challenge to elucidate the molecular mechanism underlying their expression differentiation. It is also unknown whether CINCINNATA (CIN)-like TCP genes, locally controlling cell growth and proliferation, are involved in the evolution of floral zygomorphy. To address these questions, we selected two closely related species, i.e. Petrocosmea glabristoma and Petrocosmea sinensis, with distinct petal morphology to conduct expression, hybridization, mutant, and allele-specific expression analyses. The results show that the size change of the dorsal petals between the two species is mainly mediated by the expression differentiation of CYC1C and CYC1D, while the shape variation of all petals is related to the expression change of CIN1. In reciprocal F1 hybrids, the expression of CYC1C, CYC1D, and CIN1 conforms to an additive inheritance mode, consistent with the petal phenotypes of hybrids. Through allele-specific expression analyses, we find that the expression differentiation of these TCP genes is underlain by distinctly different types of regulatory changes. We suggest that highly redundant paralogs with identical expression patterns and interspecific expression differentiation may be controlled by remarkably different regulatory pathways because natural selection may favor different regulatory modifications rather than coding sequence changes of key developmental genes in generating morphological diversity. PMID:26351309

  13. Wild Marshmallows.

    ERIC Educational Resources Information Center

    Kallas, John N.

    1984-01-01

    Provides information for teaching a unit on wild plants, including resources to use, plants to learn, safety considerations, list of plants (with scientific name, edible parts, and uses), list of plants that might cause allergic reactions when eaten. Also describes the chickweed, bull thistle, and common mallow. (BC)

  14. Molecular ecology and selection in the drought-related Asr gene polymorphisms in wild and cultivated common bean (Phaseolus vulgaris L.)

    PubMed Central

    2012-01-01

    Background The abscisic acid (ABA) pathway plays an important role in the plants’ reaction to drought stress and ABA-stress response (Asr) genes are important in controlling this process. In this sense, we accessed nucleotide diversity at two candidate genes for drought tolerance (Asr1 and Asr2), involved in an ABA signaling pathway, in the reference collection of cultivated common bean (Phaseolus vulgaris L.) and a core collection of wild common bean accessions. Results Our wild population samples covered a range of mesic (semi-arid) to very dry (desert) habitats, while our cultivated samples presented a wide spectrum of drought tolerance. Both genes showed very different patterns of nucleotide variation. Asr1 exhibited very low nucleotide diversity relative to the neutral reference loci that were previously surveyed in these populations. This suggests that strong purifying selection has been acting on this gene. In contrast, Asr2 exhibited higher levels of nucleotide diversity, which is indicative of adaptive selection. These patterns were more notable in wild beans than in cultivated common beans indicting that natural selection has played a role over long time periods compared to farmer selection since domestication. Conclusions Together these results suggested the importance of Asr1 in the context of drought tolerance, and constitute the first steps towards an association study between genetic polymorphism of this gene family and variation in drought tolerance traits. Furthermore, one of our major successes was to find that wild common bean is a reservoir of genetic variation and selection signatures at Asr genes, which may be useful for breeding drought tolerance in cultivated common bean. PMID:22799462

  15. Genetic structure, relationships and admixture with wild relatives in native pig breeds from Iberia and its islands

    PubMed Central

    2013-01-01

    Background Native pig breeds in the Iberian Peninsula are broadly classified as belonging to either the Celtic or the Mediterranean breed groups, but there are other local populations that do not fit into any of these groups. Most of the native pig breeds in Iberia are in danger of extinction, and the assessment of their genetic diversity and population structure, relationships and possible admixture between breeds, and the appraisal of conservation alternatives are crucial to adopt appropriate management strategies. Methods A panel of 24 microsatellite markers was used to genotype 844 animals representing the 17 most important native swine breeds and wild populations existing in Portugal and Spain and various statistical tools were applied to analyze the results. Results Genetic diversity was high in the breeds studied, with an overall mean of 13.6 alleles per locus and an average expected heterozygosity of 0.80. Signs of genetic bottlenecks were observed in breeds with a small census size, and population substructure was present in some of the breeds with larger census sizes. Variability among breeds accounted for about 20% of the total genetic diversity, and was explained mostly by differences among the Celtic, Mediterranean and Basque breed groups, rather than by differences between domestic and wild pigs. Breeds clustered closely according to group, and proximity was detected between wild pigs and the Mediterranean cluster of breeds. Most breeds had their own structure and identity, with very little evidence of admixture, except for the Retinto and Entrepelado varieties of the Mediterranean group, which are very similar. Genetic influence of the identified breed clusters extends beyond the specific geographical areas across borders throughout the Iberian Peninsula, with a very sharp transition from one breed group to another. Analysis of conservation priorities confirms that the ranking of a breed for conservation depends on the emphasis placed on its contribution to the between- and within-breed components of genetic diversity. Conclusions Native pig breeds in Iberia reveal high levels of genetic diversity, a solid breed structure and a clear organization in well-defined clusters. PMID:23768026

  16. Wild and Crafty.

    ERIC Educational Resources Information Center

    Braus, Judy, Ed.

    1988-01-01

    Ranger Rick's NatureScope is a creative education series dedicated to inspiring in children an understanding and appreciation of the natural world while developing the skills they will need to make responsible decisions about the environment. The topic of this issue is "Wild & Crafty." It contains a variety of craft ideas related to animal life…

  17. Salinity-related variation in gene expression in wild populations of the black-chinned tilapia from various West African coastal marine, estuarine and freshwater habitats

    NASA Astrophysics Data System (ADS)

    Tine, Mbaye; McKenzie, David J.; Bonhomme, François; Durand, Jean-Dominique

    2011-01-01

    This study measured the relative expression of the genes coding for Na +, K +-ATPase 1?(NAKA), voltage-dependent anion channel (VDAC), cytochrome c oxidase-1 (COX), and NADH dehydrogenase (NDH), in gills of six wild populations of a West African tilapia species, acclimatised to a range of seasonal (rainy or dry) salinities in coastal, estuarine and freshwater sites. Previous laboratory experiments have demonstrated that these genes, involved in active ion transport, oxidative phosphorylation, and intra-cellular ATP transport, are relatively over-expressed in gill tissues of this species acclimated to high salinity. Positive correlations between relative expression and ambient salinity were found for all genes in the wild populations (Spearman rank correlation, p < 0.05), although for some genes these were only significant in either the rainy season or dry season. Most significantly, however, relative expression was positively correlated amongst the four genes, indicating that they are functionally interrelated in adaptation of Sarotherodon melanotheron to salinity variations in its natural environment. In the rainy season, when salinity was unstable and ranged between zero and 37 psu across the sites, overall mean expression of the genes was higher than in the dry season, which may have reflected more variable particularly sudden fluctuations in salinity and poorer overall water quality. In the dry season, when the salinity is more stable but ranged between zero and 100 psu across the sites, NAKA, NDH and VDAC expression revealed U-shaped relationships with lowest relative expression at salinities approaching seawater, between 25 and 45 psu. Although it is not simple to establish direct relationship between gene expression levels and energy requirement for osmoregulation, these results may indicate that costs of adaptation to salinity are lowest in seawater, the natural environment of this species. While S. melanotheron can colonise environments with extremely high salinities, up to 100 psu, this was related to high relative expression for all genes studied, indicating that this imposes increased energy demand for osmotic homeostasis in gill tissues. This study is the first to demonstrate, in fish and in wild populations, that expression of NAKA, VDAC, NDH and COX are interrelated in gill tissues, and are involved in long-term acclimatisation to a salinity range between 0 and 100 psu.

  18. First insight into divergence, representation and chromosome distribution of reverse transcriptase fragments from L1 retrotransposons in peanut and wild relative species.

    PubMed

    Samoluk, Sergio Sebastián; Robledo, Germán; Podio, Maricel; Chalup, Laura; Ortiz, Juan Pablo A; Pessino, Silvina Claudia; Seijo, José Guillermo

    2015-02-01

    Peanut is an allotetraploid (2n = 2x = 40, AABB) of recent origin. Arachis duranensis and A. ipaënsis, the most probable diploid ancestors of the cultigen, and several other wild diploid species with different genomes (A, B, D, F and K) are used in peanut breeding programs. However, the genomic relationships and the evolutionary pathways of genome differentiation of these species are poorly understood. We performed a sequence-based phylogenetic analysis of the L1 reverse transcriptase and estimated its representation and chromosome distribution in species of five genomes and three karyotype groups with the aim of contributing to the knowledge of the genomic structure and evolution of peanut and wild diploid relatives. All the isolated rt fragments were found to belong to plant L1 lineage and were named ALI. The best supported phylogenetic groups were not concordant with the genomes or karyotype groups. The copy number of ALI sequences was higher than the expected one for plants and directly related to genome size. FISH experiments revealed that ALI is mainly located on the euchromatin of interstitial and distal regions of most chromosome arms. Divergence of ALI sequences would have occurred before the differentiation of the genomes and karyotype groups of Arachis. The representation and chromosome distribution of ALI in peanut was almost additive of those of the parental species suggesting that the spontaneous hybridization of the two parental species of peanut followed by chromosome doubling would not have induced a significant burst of ALI transposition. PMID:25633099

  19. Molecular cloning and expression analysis of RrNHX1 and RrVHA-c genes related to salt tolerance in wild Rosa rugosa.

    PubMed

    Feng, Liguo; Ding, Han; Wang, Jia; Wang, Meng; Xia, Wei; Zang, Shu; Sheng, Lixia

    2015-07-01

    Salt stress is one important factor influencing the growth and development of plants, and salt tolerance of plants is a result of combined action of multiple genes and mechanisms. Rosa rugosa is not only an important ornamental plant, but also the natural aromatic plant of high value. Wild R. rugosa which is naturally distributed on the coast and islands of China has a good salt tolerance due to the special living environment. Here, the vacuolar Na(+)/H(+) reverse transporter gene (NHX1) and the vacuolar H(+)-ATPase subunit C gene (VHA-c) closely related to plant salt tolerance were isolated from wild R. rugosa, and the expression patterns in R. rugosa leaves of the two genes under NaCl stress were determined by real-time quantitative fluorescence PCR. The results showed that the RrNHX1 protein is a constitutive Na(+)/H(+) reverse transporter, the expression of the RrNHX1 gene first increased and then decreased with the increasing salt concentration, and had a time-controlled effect. The RrVHA-c gene is suggestive of the housekeeping feature, its expression pattern showed a similar variation trend with the RrNHX1 gene under the stress of different concentrations of NaCl, and its temporal expression level under 200 mM NaCl stress presented bimodal change. These findings indicated that RrNHX1 and RrVHA-c genes are closely associated with the salt tolerance trait of wild R. rugosa. PMID:26150747

  20. Molecular cloning and expression analysis of RrNHX1 and RrVHA-c genes related to salt tolerance in wild Rosa rugosa

    PubMed Central

    Feng, Liguo; Ding, Han; Wang, Jia; Wang, Meng; Xia, Wei; Zang, Shu; Sheng, Lixia

    2015-01-01

    Salt stress is one important factor influencing the growth and development of plants, and salt tolerance of plants is a result of combined action of multiple genes and mechanisms. Rosa rugosa is not only an important ornamental plant, but also the natural aromatic plant of high value. Wild R. rugosa which is naturally distributed on the coast and islands of China has a good salt tolerance due to the special living environment. Here, the vacuolar Na+/H+ reverse transporter gene (NHX1) and the vacuolar H+-ATPase subunit C gene (VHA-c) closely related to plant salt tolerance were isolated from wild R. rugosa, and the expression patterns in R. rugosa leaves of the two genes under NaCl stress were determined by real-time quantitative fluorescence PCR. The results showed that the RrNHX1 protein is a constitutive Na+/H+ reverse transporter, the expression of the RrNHX1 gene first increased and then decreased with the increasing salt concentration, and had a time-controlled effect. The RrVHA-c gene is suggestive of the housekeeping feature, its expression pattern showed a similar variation trend with the RrNHX1 gene under the stress of different concentrations of NaCl, and its temporal expression level under 200 mM NaCl stress presented bimodal change. These findings indicated that RrNHX1 and RrVHA-c genes are closely associated with the salt tolerance trait of wild R. rugosa. PMID:26150747

  1. Contribution of heavy metals to toxicity of coal combustion related fine particulate matter (PM2.5) in Caenorhabditis elegans with wild-type or susceptible genetic background.

    PubMed

    Sun, Lingmei; Wu, Quli; Liao, Kai; Yu, Peihang; Cui, Qiuhong; Rui, Qi; Wang, Dayong

    2016-02-01

    Contribution of chemical components in coal combustion related fine particulate matter (PM2.5) to its toxicity is largely unclear. We focused on heavy metals in PM2.5 to investigate their contribution to toxicity formation in Caenorhabditis elegans. Among 8 heavy metals examined (Fe, Zn, Pb, As, Cd, Cr, Cu, and Ni), Pb, Cr, and Cu potentially contributed to PM2.5 toxicity in wild-type nematodes. Combinational exposure to any two of these three heavy metals caused higher toxicity than exposure to Pb, Cr, or Cu alone. Toxicity from the combinational exposure to Pb, Cr, and Cu at the examined concentrations was higher than exposure to PM2.5 (100 mg/L). Moreover, mutation of sod-2 or sod-3 gene encoding Mn-SOD increased susceptibility in nematodes exposed to Fe, Zn, or Ni, although Fe, Zn, or Ni at the examined concentration did not lead to toxicity in wild-type nematodes. Our results highlight the potential contribution of heavy metals to PM2.5 toxicity in environmental organisms. PMID:26610299

  2. Induction of MDM2-P2 Transcripts Correlates with Stabilized Wild-Type p53 in Betel- and Tobacco-Related Human Oral Cancer

    PubMed Central

    Ralhan, Ranju; Sandhya, Agarwal; Meera, Mathur; Bohdan, Wasylyk; Nootan, Shukla K.

    2000-01-01

    MDM2, a critical element of cellular homeostasis mechanisms, is involved in complex interactions with important cell-cycle and stress-response regulators including p53. The mdm2-P2 promoter is a transcriptional target of p53. The aim of this study was to determine the association between mdm2-P2 transcripts and the status of the p53 gene in betel- and tobacco-related oral squamous cell carcinomas (SCCs) to understand the mechanism of deregulation of MDM2 and p53 expression and their prognostic implications in oral tumorigenesis. Elevated levels of MDM2 proteins were observed in 11 of 25 (44%) oral hyperplastic lesions, nine of 15 (60%) dysplastic lesions, and 71 of 100 (71%) SCCs. The intriguing feature of the study was the identification and different subcellular localization of three isoforms of MDM2 (ie, 90 kd, 76 kd, and 57 kd) in oral SCCs and their correlation with p53 overexpression in each tumor. The hallmark of the study was the detection of mdm2-P2 transcripts in 12 of 20 oral SCCs overexpressing both MDM2 and p53 proteins while harboring wild-type p53 alleles. Furthermore, mdm2 amplification was an infrequent event in betel- and tobacco-associated oral tumorigenesis. The differential compartmentalization of the three isoforms of MDM2 suggests that each has a distinct function, potentially in the regulation of p53 and other gene products implicated in oral tumorigenesis. In conclusion, we report herein the first evidence suggesting that enhanced translation of mdm2-P2 transcripts (S-mdm2) may represent an important mechanism of overexpression and consequent stabilization and functional inactivation of wild-type p53 serving as an adverse prognosticator in betel- and tobacco-related oral cancer. The clinical significance of the functional inactivation of wild-type p53 by MDM2 is underscored by the significantly shorter median disease-free survival time (16 months) observed in p53/MDM2-positive cases as compared to those which did not show co-expression of these proteins (median time, 26 months; P = 0.02). PMID:10934161

  3. Highly Diverse Morbillivirus-Related Paramyxoviruses in Wild Fauna of the Southwestern Indian Ocean Islands: Evidence of Exchange between Introduced and Endemic Small Mammals

    PubMed Central

    Mélade, Julien; Dietrich, Muriel; Ramasindrazana, Beza; Soarimalala, Voahangy; Lagadec, Erwan; le Minter, Gildas; Tortosa, Pablo; Heraud, Jean-Michel; de Lamballerie, Xavier; Goodman, Steven M.; Dellagi, Koussay

    2014-01-01

    ABSTRACT The Paramyxoviridae form an increasingly diverse viral family, infecting a wide variety of different hosts. In recent years, they have been linked to disease emergence in many different animal populations and in humans. Bats and rodents have been identified as major animal populations capable of harboring paramyxoviruses, and host shifting between these animals is likely to be an important driving factor in the underlying evolutionary processes that eventually lead to disease emergence. Here, we have studied paramyxovirus circulation within populations of endemic and introduced wild small mammals of the southwestern Indian Ocean region and belonging to four taxonomic orders: Rodentia, Afrosoricida, Soricomorpha, and Chiroptera. We report elevated infection levels as well as widespread paramyxovirus dispersal and frequent host exchange of a newly emerging genus of the Paramyxoviridae, currently referred to as the unclassified morbillivirus-related viruses (UMRVs). In contrast to other genera of the Paramyxoviridae, where bats have been shown to be a key host species, we show that rodents (and, in particular, Rattus rattus) are significant spreaders of UMRVs. We predict that the ecological particularities of the southwestern Indian Ocean, where small mammal species often live in densely packed, multispecies communities, in combination with the increasing invasion of R. rattus and perturbations of endemic animal communities by active anthropological development, will have a major influence on the dynamics of UMRV infection. IMPORTANCE Identification of the infectious agents that circulate within wild animal reservoirs is essential for several reasons: (i) infectious disease outbreaks often originate from wild fauna; (ii) anthropological expansion increases the risk of contact between human and animal populations and, as a result, the risk of disease emergence; (iii) evaluation of pathogen reservoirs helps in elaborating preventive measures to limit the risk of disease emergence. Many paramyxoviruses for which bats and rodents serve as major reservoirs have demonstrated their potential to cause disease in humans and animals. In the context of the biodiversity hot spot of southwestern Indian Ocean islands and their rich endemic fauna, we show that highly diverse UMRVs exchange between various endemic animal species, and their dissemination likely is facilitated by the introduced Rattus rattus. Hence, many members of the Paramyxoviridae appear well adapted for the study of the viral phylodynamics that may be associated with disease emergence. PMID:24829336

  4. Theobroxide Treatment Inhibits Wild Fire Disease Occurrence in Nicotiana benthamiana by the Overexpression of Defense-related Genes.

    PubMed

    Ahn, Soon Young; Baek, Kwang-Hyun; Moon, Yong Sun; Yun, Hae Keun

    2013-03-01

    Theobroxide, a novel compound isolated from a fungus Lasiodiplodia theobromae, stimulates potato tuber formation and induces flowering of morning glory by initiating the jasmonic acid synthesis pathway. To elucidate the effect of theobroxide on pathogen resistance in plants, Nicotiana benthamiana plants treated with theobroxide were immediately infiltrated with Pseudomonas syringae pv. tabaci. Exogenous application of theobroxide inhibited development of lesion symptoms, and growth of the bacterial cells was significantly retarded. Semi-quantitative RT-PCRs using the primers of 18 defense-related genes were performed to investigate the molecular mechanisms of resistance. Among the genes, the theobroxide treatment increased the expression of pathogenesis-related protein 1a (PR1a), pathogenesis-related protein 1b (PR1b), glutathione S-transferase (GST), allen oxide cyclase (AOC), and lipoxyganase (LOX). All these data strongly indicate that theobroxide treatment inhibits disease development by faster induction of defense responses, which can be possible by the induction of defense-related genes including PR1a, PR1b, and GST triggered by the elevated jasmonic acid. PMID:25288936

  5. Theobroxide Treatment Inhibits Wild Fire Disease Occurrence in Nicotiana benthamiana by the Overexpression of Defense-related Genes

    PubMed Central

    Ahn, Soon Young; Baek, Kwang-Hyun; Moon, Yong Sun; Yun, Hae Keun

    2013-01-01

    Theobroxide, a novel compound isolated from a fungus Lasiodiplodia theobromae, stimulates potato tuber formation and induces flowering of morning glory by initiating the jasmonic acid synthesis pathway. To elucidate the effect of theobroxide on pathogen resistance in plants, Nicotiana benthamiana plants treated with theobroxide were immediately infiltrated with Pseudomonas syringae pv. tabaci. Exogenous application of theobroxide inhibited development of lesion symptoms, and growth of the bacterial cells was significantly retarded. Semi-quantitative RT-PCRs using the primers of 18 defense-related genes were performed to investigate the molecular mechanisms of resistance. Among the genes, the theobroxide treatment increased the expression of pathogenesis-related protein 1a (PR1a), pathogenesis-related protein 1b (PR1b), glutathione S-transferase (GST), allen oxide cyclase (AOC), and lipoxyganase (LOX). All these data strongly indicate that theobroxide treatment inhibits disease development by faster induction of defense responses, which can be possible by the induction of defense-related genes including PR1a, PR1b, and GST triggered by the elevated jasmonic acid. PMID:25288936

  6. No. 17 2014 Camera Trapping Wild Cats

    E-print Network

    Mazzotti, Frank

    Caribbean Naturalist No. 17 2014 Camera Trapping Wild Cats with Landowners in Northern Belize, behavior, biogeography, taxonomy, evolution, anatomy, physiology, geology, and related fields. Manuscripts

  7. Phenotypic comparisons between wild relatives and cultivars of kiwifruit, persimmon, mulberry, and olive at the National Clonal Germplasm Repository, Davis, CA

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Phenotypic traits were characterized for 23 wild species and 4 cultivars of 4 clonal fruit crops including, Kiwifruit (Actinidia), Persimmon (Diospyros), Mulberry (Morus) and Olive (Olea). Across all four crops, the wild species varied distinctly, especially when compared with the cultivars. The wil...

  8. A Morphometric Study of Species Boundaries of the Wild Potato Solanum Series Piurana (Solanaceae) and Putatively Related Species from Seven Other Series in Solanum

    E-print Network

    Spooner, David

    A Morphometric Study of Species Boundaries of the Wild Potato Solanum Series Piurana (Solanaceae--morphometrics, Peru, potatoes, Solanaceae, Solanum section Petota, Solanum series Piurana. The genus Solanum L. is one of the most important genera of the Solanaceae. There are about 190 wild tuber-bearing species (Solanum sect

  9. Radiation-induced DNA damage and the relative biological effectiveness of 18F-FDG in wild-type mice.

    PubMed

    Taylor, Kristina; Lemon, Jennifer A; Boreham, Douglas R

    2014-07-01

    Clinically, the most commonly used positron emission tomography (PET) radiotracer is the glucose analog 2-[(18)F] fluoro-2-deoxy-D-glucose ((18)F-FDG), however little research has been conducted on the biological effects of (18)F-FDG injections. The induction and repair of DNA damage and the relative biological effectiveness (RBE) of radiation from (18)F-FDG relative to 662 keV ?-rays were investigated. The study also assessed whether low-dose radiation exposure from (18)F-FDG was capable of inducing an adaptive response. DNA damage to the bone marrow erythroblast population was measured using micronucleus formation and lymphocyte ?H2A.X levels. To test the RBE of (18)F-FDG, mice were injected with a range of activities of (18)F-FDG (0-14.80 MBq) or irradiated with Cs-137 ?-rays (0-100 mGy). The adaptive response was investigated 24h after the (18)F-FDG injection by 1 Gy in vivo challenge doses for micronucleated reticulocyte (MN-RET) formation or 1, 2 and 4 Gy in vitro challenges doses for ?H2A.X formation. A significant increase in MN-RET formation above controls occurred following injection activities of 3.70, 7.40 or 14.80 MBq (P < 0.001) which correspond to bone marrow doses of ~35, 75 and 150 mGy, respectively. Per unit dose, the Cs-137 radiation exposure induced significantly more damage than the (18)F-FDG injections (RBE = 0.79 ± 0.04). A 20% reduction in ?H2A.X fluorescence was observed in mice injected with a prior adapting low dose of 14.80 MBq (18)F-FDG relative to controls (P < 0.019). A 0.74 MBq (18)F-FDG injection, which gives mice a dose approximately equal to a typical human PET scan, did not cause a significant increase in DNA damage nor did it generate an adaptive response. Typical (18)F-FDG injection activities used in small animal imaging (14.80 MBq) resulted in a decrease in DNA damage, as measured by ?H2A.X formation, below spontaneous levels observed in control mice. The (18)F-FDG RBE was <1.0, indicating that the mixed radiation quality and/or low dose rate from PET scans is less damaging than equivalent doses of gamma radiation. PMID:24870562

  10. Infection with a Hepatozoon sp. closely related to Hepatozoon felis in a wild Pampas gray fox (Lycalopex -Pseudalopex -gymnocercus) co-infected with canine distemper virus.

    PubMed

    Giannitti, Federico; Diab, Santiago S; Uzal, Francisco A; Fresneda, Karina; Rossi, Daniel; Talmi-Frank, Dalit; Baneth, Gad

    2012-05-25

    A species of Hepatozoon closely related to Hepatozoon felis found in the skeletal and cardiac muscle of a wild Pampas gray fox (Lycalopex gymnocercus) is described. The fox was euthanized after showing severe incoordination. On necropsy and histopathology there was bilateral, diffuse, severe, sub-acute, necrotizing bronchointerstitial pneumonia, with intracytoplasmic and intranuclear eosinophilic inclusion bodies. Canine distemper virus was detected by immunohistochemistry in the bronchiolar epithelium, syncytial cells, alveolar macrophages and pneumocytes. The skeletal muscle and myocardium contained multiple round to oval protozoan cysts ranging from 64 ?m × 75 ?m to 98 ?m × 122 ?m, with a central eosinophilic meront-like core surrounded by concentric rings of mucinous material resembling Hepatozoon americanum cysts but smaller in size. Macrophages within rare pyogranulomas and monocytes/macrophages in adjacent sinusoidal blood vessels in the skeletal muscle contained intracytoplasmic round protozoa consistent with merozoites or developing gamonts of Hepatozoon. Hepatozoon sp. infection was confirmed by PCR of skeletal muscle and the sequenced 18S rRNA PCR product was found to be 99% identical to H. felis by BLAST analysis and deposited in GenBank as accession number HQ020489. It clustered together in the phylogenetic analysis with published H. felis sequences and separately from H. canis, H. americanum and other Hepatozoon species. However, the close relatedness of the fox Hepatozoon to H. felis does not rule out infection with a different and possibly unknown Hepatozoon species. PMID:22112977

  11. The control of tomato fruit elongation orchestrated by sun, ovate and fs8.1 in a wild relative of tomato.

    PubMed

    Wu, Shan; Clevenger, Josh P; Sun, Liang; Visa, Sofia; Kamiya, Yuji; Jikumaru, Yusuke; Blakeslee, Joshua; van der Knaap, Esther

    2015-09-01

    Within the cultivated tomato germplasm, sun, ovate and fs8.1 are the three predominant QTLs controlling fruit elongation. Although SUN and OVATE have been cloned, their role in plant growth and development are not well understood. To compare and contrast the effects of the three QTLs in a homogeneous background, we developed near isogenic lines (NILs) in the wild species Solanum pimpinellifolium LA1589 background. We carried out detailed morphological characterization of reproductive and vegetative organs in the single, double and triple NILs and determined the epistatic interactions of the three loci affecting fruit shape. The phenotypic evaluations demonstrated that the three loci regulate unique aspects of ovary and fruit elongation and in different temporal manners. The strongest effect on organ shape was caused by sun. In addition to fruit shape, sun also affected leaf and sepal elongation and stem thickness. The synergistic interaction between sun and ovate or fs8.1 suggested that the pathways involving SUN, OVATE and the gene(s) underlying fs8.1 may converge at a common node. The results of an extensive profiling analysis suggested that the degree of fruit elongation was not related to the accumulation of any of the classical hormones. PMID:26259178

  12. The effects of wild blueberry consumption on plasma markers and gene expression related to glucose metabolism in the obese Zucker rat.

    PubMed

    Vendrame, Stefano; Zhao, Alice; Merrow, Thomas; Klimis-Zacas, Dorothy

    2015-06-01

    Impaired fasting blood glucose is one of the landmark signs of metabolic syndrome, together with hyperinsulinemia, dyslipidemia, hypertension, and a chronic proinflammatory, pro-oxidative, and prothrombotic environment. This study investigates the effect of wild blueberry (WB) consumption on blood glucose levels and other parameters involved in glucose metabolism in the obese Zucker rat (OZR), an experimental model of metabolic syndrome. Sixteen OZRs and 16 lean littermate controls (lean Zucker rat [LZR]) were fed an 8% enriched WB diet or a control (C) diet for 8 weeks. Plasma concentrations of glucose, insulin, glycated hemoglobin GHbA1c, resistin, and retinol-binding protein 4 (RBP4) were measured. Expression of the resistin, RBP4, and glucose transporter GLUT4 genes was also determined both in the liver and the abdominal adipose tissue (AAT). Plasma glycated hemoglobin HbA1c, RBP4, and resistin concentrations were significantly lower in OZRs following the WB diet (-20%, -22%, and -27%, respectively, compared to C diet, P<.05). Following WB consumption, resistin expression was significantly downregulated in the liver of both OZRs and LZRs (-28% and -61%, respectively, P<.05), while RBP4 expression was significantly downregulated in the AAT of both OZRs and LZRs (-87% and -43%, respectively, P<.05). All other markers were not significantly affected following WB consumption. In conclusion, WB consumption normalizes some markers related to glucose metabolism in the OZR model of metabolic syndrome, but has no effect on fasting blood glucose or insulin concentrations. PMID:25383490

  13. Copper storage in the liver of the wild mute swan (Cygnus olor). Its possible relation to pollution of harbor waters by antifouling paints

    SciTech Connect

    Molnar, J.J.

    1983-12-01

    Postmortem examination of three wild mute swans (Cygnus olor) from a harbor area disclosed an unusual black discoloration of the liver. Chemical, histochemical, and microscopic studies, along with electron-probe microanalysis, showed that cytoplasmic pigment granules in the liver cells contained a copper-protein complex. Similar findings have been reported in Danish and English studies on large numbers of wild mute swans. Two control mute swans from The Bronx Zoo had negligible amounts of hepatic copper. The striking difference between the wild and the captive swans in hepatic copper content suggests that the copper in the wild swans was of environmental origin, most likely from copper-rich antifouling paint used extensively in the marine industry. Flakes of this paint may be ingested by swans searching for food in the sediment of harbor waters.

  14. TAXONOMY OF MEXICAN DIPLOID WILD POTATOES (SOLANUM

    E-print Network

    Spooner, David

    mechanism in Solanum sect. Petota and explains success or fail- ure of intra- and interspecific crosses, due wild relatives, contains about 200 wild species distributed from the southwestern United States morphologically, and we questioned whether they were valid species. We analyzed these and related taxa

  15. Prdm9, a major determinant of meiotic recombination hotspots, is not functional in dogs and their wild relatives, wolves and coyotes.

    PubMed

    Muñoz-Fuentes, Violeta; Di Rienzo, Anna; Vilà, Carles

    2011-01-01

    Meiotic recombination is a fundamental process needed for the correct segregation of chromosomes during meiosis in sexually reproducing organisms. In humans, 80% of crossovers are estimated to occur at specific areas of the genome called recombination hotspots. Recently, a protein called PRDM9 was identified as a major player in determining the location of genome-wide meiotic recombination hotspots in humans and mice. The origin of this protein seems to be ancient in evolutionary time, as reflected by its fairly conserved structure in lineages that diverged over 700 million years ago. Despite its important role, there are many animal groups in which Prdm9 is absent (e.g. birds, reptiles, amphibians, diptera) and it has been suggested to have disruptive mutations and thus to be a pseudogene in dogs. Because of the dog's history through domestication and artificial selection, we wanted to confirm the presence of a disrupted Prdm9 gene in dogs and determine whether this was exclusive of this species or whether it also occurred in its wild ancestor, the wolf, and in a close relative, the coyote. We sequenced the region in the dog genome that aligned to the last exon of the human Prdm9, containing the entire zinc finger domain, in 4 dogs, 17 wolves and 2 coyotes. Our results show that the three canid species possess mutations that likely make this gene non functional. Because these mutations are shared across the three species, they must have appeared prior to the split of the wolf and the coyote, millions of years ago, and are not related to domestication. In addition, our results suggest that in these three canid species recombination does not occur at hotspots or hotspot location is controlled through a mechanism yet to be determined. PMID:22102853

  16. Genetic Architecture of Palm Oil Fatty Acid Composition in Cultivated Oil Palm (Elaeis guineensis Jacq.) Compared to Its Wild Relative E. oleifera (H.B.K) Cortés

    PubMed Central

    Montoya, Carmenza; Cochard, Benoit; Flori, Albert; Cros, David; Lopes, Ricardo; Cuellar, Teresa; Espeout, Sandra; Syaputra, Indra; Villeneuve, Pierre; Pina, Michel; Ritter, Enrique; Leroy, Thierry; Billotte, Norbert

    2014-01-01

    We searched for quantitative trait loci (QTL) associated with the palm oil fatty acid composition of mature fruits of the oil palm E. guineensis Jacq. in comparison with its wild relative E. oleifera (H.B.K) Cortés. The oil palm cross LM2T x DA10D between two heterozygous parents was considered in our experiment as an intraspecific representative of E. guineensis. Its QTLs were compared to QTLs published for the same traits in an interspecific Elaeis pseudo-backcross used as an indirect representative of E. oleifera. Few correlations were found in E. guineensis between pulp fatty acid proportions and yield traits, allowing for the rather independent selection of both types of traits. Sixteen QTLs affecting palm oil fatty acid proportions and iodine value were identified in oil palm. The phenotypic variation explained by the detected QTLs was low to medium in E. guineensis, ranging between 10% and 36%. The explained cumulative variation was 29% for palmitic acid C16:0 (one QTL), 68% for stearic acid C18:0 (two QTLs), 50% for oleic acid C18:1 (three QTLs), 25% for linoleic acid C18:2 (one QTL), and 40% (two QTLs) for the iodine value. Good marker co-linearity was observed between the intraspecific and interspecific Simple Sequence Repeat (SSR) linkage maps. Specific QTL regions for several traits were found in each mapping population. Our comparative QTL results in both E. guineensis and interspecific materials strongly suggest that, apart from two common QTL zones, there are two specific QTL regions with major effects, which might be one in E. guineensis, the other in E. oleifera, which are independent of each other and harbor QTLs for several traits, indicating either pleiotropic effects or linkage. Using QTL maps connected by highly transferable SSR markers, our study established a good basis to decipher in the future such hypothesis at the Elaeis genus level. PMID:24816555

  17. Age-Related Changes in Pre- and Postsynaptic Partners of the Cholinergic C-Boutons in Wild-Type and SOD1G93A Lumbar Motoneurons

    PubMed Central

    Milan, Léa; Courtand, Gilles; Cardoit, Laura; Masmejean, Frédérique; Barrière, Grégory; Cazalets, Jean-René; Garret, Maurice; Bertrand, Sandrine S.

    2015-01-01

    Large cholinergic synaptic terminals known as C-boutons densely innervate the soma and proximal dendrites of motoneurons that are prone to neurodegeneration in amyotrophic lateral sclerosis (ALS). Studies using the Cu/Zn-superoxide dismutase (SOD1) mouse model of ALS have generated conflicting data regarding C-bouton alterations exhibited during ALS pathogenesis. In the present work, a longitudinal study combining immunohistochemistry, biochemical approaches and extra- and intra-cellular electrophysiological recordings revealed that the whole spinal cholinergic system is modified in the SOD1 mouse model of ALS compared to wild type (WT) mice as early as the second postnatal week. In WT motoneurons, both C-bouton terminals and associated M2 postsynaptic receptors presented a complex age-related dynamic that appeared completely disrupted in SOD1 motoneurons. Indeed, parallel to C-bouton morphological alterations, analysis of confocal images revealed a clustering process of M2 receptors during WT motoneuron development and maturation that was absent in SOD1 motoneurons. Our data demonstrated for the first time that the lamina X cholinergic interneurons, the neuronal source of C-boutons, are over-abundant in high lumbar segments in SOD1 mice and are subject to neurodegeneration in the SOD1 animal model. Finally, we showed that early C-bouton system alterations have no physiological impact on the cholinergic neuromodulation of newborn motoneurons. Altogether, these data suggest a complete reconfiguration of the spinal cholinergic system in SOD1 spinal networks that could be part of the compensatory mechanisms established during spinal development. PMID:26305672

  18. Genetic architecture of palm oil fatty acid composition in cultivated oil palm (Elaeis guineensis Jacq.) compared to its wild relative E. oleifera (H.B.K) Cortés.

    PubMed

    Montoya, Carmenza; Cochard, Benoit; Flori, Albert; Cros, David; Lopes, Ricardo; Cuellar, Teresa; Espeout, Sandra; Syaputra, Indra; Villeneuve, Pierre; Pina, Michel; Ritter, Enrique; Leroy, Thierry; Billotte, Norbert

    2014-01-01

    We searched for quantitative trait loci (QTL) associated with the palm oil fatty acid composition of mature fruits of the oil palm E. guineensis Jacq. in comparison with its wild relative E. oleifera (H.B.K) Cortés. The oil palm cross LM2T x DA10D between two heterozygous parents was considered in our experiment as an intraspecific representative of E. guineensis. Its QTLs were compared to QTLs published for the same traits in an interspecific Elaeis pseudo-backcross used as an indirect representative of E. oleifera. Few correlations were found in E. guineensis between pulp fatty acid proportions and yield traits, allowing for the rather independent selection of both types of traits. Sixteen QTLs affecting palm oil fatty acid proportions and iodine value were identified in oil palm. The phenotypic variation explained by the detected QTLs was low to medium in E. guineensis, ranging between 10% and 36%. The explained cumulative variation was 29% for palmitic acid C16:0 (one QTL), 68% for stearic acid C18:0 (two QTLs), 50% for oleic acid C18:1 (three QTLs), 25% for linoleic acid C18:2 (one QTL), and 40% (two QTLs) for the iodine value. Good marker co-linearity was observed between the intraspecific and interspecific Simple Sequence Repeat (SSR) linkage maps. Specific QTL regions for several traits were found in each mapping population. Our comparative QTL results in both E. guineensis and interspecific materials strongly suggest that, apart from two common QTL zones, there are two specific QTL regions with major effects, which might be one in E. guineensis, the other in E. oleifera, which are independent of each other and harbor QTLs for several traits, indicating either pleiotropic effects or linkage. Using QTL maps connected by highly transferable SSR markers, our study established a good basis to decipher in the future such hypothesis at the Elaeis genus level. PMID:24816555

  19. CONSERVATION NOTES WILD CHICKENS

    E-print Network

    ^-^ CONSERVATION NOTES AMERICA'S WILD CHICKENS Most natural environments in the United States once had at least one kind of Nature's wild chickens, the upland game birds. Just as there are many kinds NOTES ^^ AMERICA'S WILD CHICKENS ^UUOS HOl£, Most natural environments in the United States once had

  20. GENETIC DIVERSITY OF WILD PYRUS COMMUNIS L.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Edible European pears (Pyrus communis ssp. communis L.) are thought to be derived from wild relatives native to the Caucasus Mountain region and eastern Europe. We collected genotype, phenotype and geographic origin data for 145 P. communis individuals derived from seeds collected from wild relativ...

  1. TAXONOMIC EVALUATION OF PUTATIVELY RELATED WILD POTATO SPECIES OF SOLANUM SERIES CUNEOALATA, INGIFOLIA, OLMOSIANA, PIURANA, AND SIMPLICISSIMA, BY MORPHOLOGICAL DATA FROM AN ANDEAN FIELD STATION IN PERU

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Solanum series Piurana (15 species) is one of the nineteen tuber-bearing series recognized in Hawkes’ last taxonomic treatment of wild potatoes (section Petota) in 1990. Although it contains some of the morphologically most distinctive species in the section, its definition as a series has always be...

  2. Eco-Heroes out of Place and Relations: Decolonizing the Narratives of "Into the Wild" and "Grizzly Man" through Land Education

    ERIC Educational Resources Information Center

    Korteweg, Lisa; Oakley, Jan

    2014-01-01

    Eco-heroic quests for environmental communion continue to be represented, mediated, and glorified through film and media narratives. This paper examines two eco-heroic quests in the Alaskan "wilderness" that have been portrayed in two Hollywood motion pictures: the movies "Grizzly Man" and "Into the Wild". Both films…

  3. Comprehensive Serology Based on a Peptide ELISA to Assess the Prevalence of Closely Related Equine Herpesviruses in Zoo and Wild Animals.

    PubMed

    Abdelgawad, Azza; Hermes, Robert; Damiani, Armando; Lamglait, Benjamin; Czirják, Gábor Á; East, Marion; Aschenborn, Ortwin; Wenker, Christian; Kasem, Samy; Osterrieder, Nikolaus; Greenwood, Alex D

    2015-01-01

    Equine herpesvirus type 1 (EHV-1) causes respiratory disorders and abortion in equids while EHV-1 regularly causes equine herpesvirus myeloencephalopathy (EHM), a stroke-like syndrome following endothelial cell infection in horses. Both EHV-1 and EHV-9 infections of non-definitive hosts often result in neuronal infection and high case fatality rates. Hence, EHV-1 and EHV-9 are somewhat unusual herpesviruses and lack strict host specificity, and the true extent of their host ranges have remained unclear. In order to determine the seroprevalence of EHV-1 and EHV-9, a sensitive and specific peptide-based ELISA was developed and applied to 428 sera from captive and wild animals representing 30 species in 12 families and five orders. Members of the Equidae, Rhinocerotidae and Bovidae were serologically positive for EHV-1 and EHV-9. The prevalence of EHV-1 in the sampled wild zebra populations was significantly higher than in zoos suggesting captivity may reduce exposure to EHV-1. Furthermore, the seroprevalence for EHV-1 was significantly higher than for EHV-9 in zebras. In contrast, EHV-9 antibody prevalence was high in captive and wild African rhinoceros species suggesting that they may serve as a reservoir or natural host for EHV-9. Thus, EHV-1 and EHV-9 have a broad host range favoring African herbivores and may have acquired novel natural hosts in ecosystems where wild equids are common and are in close contact with other perissodactyls. PMID:26378452

  4. A Morphometric Study of Species Boundaries of the Wild Potato Solanum Series Piurana (Solanaceae) and putatively related species from seven other series in Solanum Sect. Petota

    Technology Transfer Automated Retrieval System (TEKTRAN)

    There are about 190 wild potato (Solanum section Petota) species distributed from the southwestern United States to central Argentina and adjacent Chile and Uruguay. Their overall morphological similarity has led to widely conflicting taxonomic treatments. Solanum series Piurana is one of 21 series ...

  5. Comprehensive Serology Based on a Peptide ELISA to Assess the Prevalence of Closely Related Equine Herpesviruses in Zoo and Wild Animals

    PubMed Central

    Abdelgawad, Azza; Hermes, Robert; Damiani, Armando; Lamglait, Benjamin; Czirják, Gábor Á.; East, Marion; Aschenborn, Ortwin; Wenker, Christian; Kasem, Samy; Osterrieder, Nikolaus; Greenwood, Alex D.

    2015-01-01

    Equine herpesvirus type 1 (EHV-1) causes respiratory disorders and abortion in equids while EHV-1 regularly causes equine herpesvirus myeloencephalopathy (EHM), a stroke-like syndrome following endothelial cell infection in horses. Both EHV-1 and EHV-9 infections of non-definitive hosts often result in neuronal infection and high case fatality rates. Hence, EHV-1 and EHV-9 are somewhat unusual herpesviruses and lack strict host specificity, and the true extent of their host ranges have remained unclear. In order to determine the seroprevalence of EHV-1 and EHV-9, a sensitive and specific peptide-based ELISA was developed and applied to 428 sera from captive and wild animals representing 30 species in 12 families and five orders. Members of the Equidae, Rhinocerotidae and Bovidae were serologically positive for EHV-1 and EHV-9. The prevalence of EHV-1 in the sampled wild zebra populations was significantly higher than in zoos suggesting captivity may reduce exposure to EHV-1. Furthermore, the seroprevalence for EHV-1 was significantly higher than for EHV-9 in zebras. In contrast, EHV-9 antibody prevalence was high in captive and wild African rhinoceros species suggesting that they may serve as a reservoir or natural host for EHV-9. Thus, EHV-1 and EHV-9 have a broad host range favoring African herbivores and may have acquired novel natural hosts in ecosystems where wild equids are common and are in close contact with other perissodactyls. PMID:26378452

  6. ABSTRACT -Inheritance of the basic morphological differ-ences between primitive maize and teosinte is mainly con-

    E-print Network

    Doebley, John

    ABSTRACT - Inheritance of the basic morphological differ- ences between primitive maize, and seed-related traits. The proportion of the phenotypic variance ex- plained by the QTLs for a trait Received September 15, 2009 1 Current address: Seminis Vegetable Seeds, Inc., Woodland, California, USA

  7. Evidence That the Origin of Naked Kernels During Maize Domestication Was Caused by a Single Amino Acid Substitution in tga1.

    PubMed

    Wang, Huai; Studer, Anthony J; Zhao, Qiong; Meeley, Robert; Doebley, John F

    2015-07-01

    teosinte glume architecture1 (tga1), a member of the SBP-box gene family of transcriptional regulators, has been identified as the gene conferring naked kernels in maize vs. encased kernels in its wild progenitor, teosinte. However, the identity of the causative polymorphism within tga1 that produces these different phenotypes has remained unknown. Using nucleotide diversity data, we show that there is a single fixed nucleotide difference between maize and teosinte in tga1, and this difference confers a Lys (teosinte allele) to Asn (maize allele) substitution. This substitution transforms TGA1 into a transcriptional repressor. While both alleles of TGA1 can bind a GTAC motif, maize-TGA1 forms more stable dimers than teosinte-TGA1. Since it is the only fixed difference between maize and teosinte, this alteration in protein function likely underlies the differences in maize and teosinte glume architecture. We previously reported a difference in TGA1 protein abundance between maize and teosinte based on relative signal intensity of a Western blot. Here, we show that this signal difference is not due to tga1 but to a second gene, neighbor of tga1 (not1). Not1 encodes a protein that has 92% amino acid similarity to TGA1 and that is recognized by the TGA1 antibody. Genetic mapping and phenotypic data show that tga1, without a contribution from not1, controls the difference in covered vs. naked kernels. No trait differences could be associated with the maize vs. teosinte alleles of not1. Our results document how morphological evolution can be driven by a simple nucleotide change that alters protein function. PMID:25943393

  8. Molecular Evolution and Phylogenetic Analysis of Eight COL Superfamily Genes in Group I Related to Photoperiodic Regulation of Flowering Time in Wild and Domesticated Cotton (Gossypium) Species

    PubMed Central

    Zhang, Rui; Ding, Jian; Liu, Chunxiao; Cai, Caiping; Zhou, Baoliang; Zhang, Tianzhen; Guo, Wangzhen

    2015-01-01

    Flowering time is an important ecological trait that determines the transition from vegetative to reproductive growth. Flowering time in cotton is controlled by short-day photoperiods, with strict photoperiod sensitivity. As the CO-FT (CONSTANS-FLOWER LOCUS T) module regulates photoperiodic flowering in several plants, we selected eight CONSTANS genes (COL) in group I to detect their expression patterns in long-day and short-day conditions. Further, we individually cloned and sequenced their homologs from 25 different cotton accessions and one outgroup. Finally, we studied their structures, phylogenetic relationship, and molecular evolution in both coding region and three characteristic domains. All the eight COLs in group I show diurnal expression. In the orthologous and homeologous loci, each gene structure in different cotton species is highly conserved, while length variation has occurred due to insertions/deletions in intron and/or exon regions. Six genes, COL2 to COL5, COL7 and COL8, exhibit higher nucleotide diversity in the D-subgenome than in the A-subgenome. The Ks values of 98.37% in all allotetraploid cotton species examined were higher in the A-D and At-Dt comparison than in the A-At and D-Dt comparisons, and the Pearson’s correlation coefficient (r) of Ks between A vs. D and At vs. Dt also showed positive, high correlations, with a correlation coefficient of at least 0.797. The nucleotide polymorphism in wild species is significantly higher compared to G. hirsutum and G. barbadense, indicating a genetic bottleneck associated with the domesticated cotton species. Three characteristic domains in eight COLs exhibit different evolutionary rates, with the CCT domain highly conserved, while the B-box and Var domain much more variable in allotetraploid species. Taken together, COL1, COL2 and COL8 endured greater selective pressures during the domestication process. The study improves our understanding of the domestication-related genes/traits during cotton evolutionary process. PMID:25710777

  9. Bovine tuberculosis infection in wild mammals in the South-West region of England: a survey of prevalence and a semi-quantitative assessment of the relative risks to cattle.

    PubMed

    Delahay, R J; Smith, G C; Barlow, A M; Walker, N; Harris, A; Clifton-Hadley, R S; Cheeseman, C L

    2007-03-01

    In the United Kingdom, badgers are implicated in the transmission of Mycobacterium bovis to cattle, but little information is available on the potential role of other wild mammals. This paper presents the results of the largest systematic UK survey of M. bovis infection in other wild mammals. Mammal carcasses (4715) from throughout the South-West region of England were subjected to a systematic post mortem examination, microbiological culture of tissues and spoligotyping of isolates. Infection was confirmed in fox, stoat, polecat, common shrew, yellow-necked mouse, wood mouse, field vole, grey squirrel, roe deer, red deer, fallow deer and muntjac. Prevalence in deer may have been underestimated because the majority were incomplete carcasses, which reduced the likelihood of detecting infection. Infected cases were found in Wiltshire, Somerset, Devon and Cornwall, Gloucestershire and Herefordshire. Lesions were found in a high proportion of spoligotype-positive fallow, red and roe deer, and a single fox, stoat and muntjac. M. bovis spoligotypes occurred in a similar frequency of occurrence to that in cattle and badgers. Data on prevalence, pathology, abundance and ecology of wild mammals was integrated in a semi-quantitative risk assessment of the likelihood of transmission to cattle relative to badgers. Although most species presented a relatively low risk, higher values and uncertainty associated with muntjac, roe, red and in particular fallow deer, suggest they require further investigation. The results suggest that deer should be considered as potential, although probably localised, sources of infection for cattle. PMID:16434219

  10. Horticultural value of wild genetic resources: introduction to the workshop

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Wild plant genetic resources are increasingly becoming valuable for breeding, genomics, and ornamental horticulture programs. Wild relatives of horticultural species may offer desirable traits that are not available in cultivated varieties, but “wilds” often also have traits that are highly undesir...

  11. Project Wild (Project Tame).

    ERIC Educational Resources Information Center

    Siegenthaler, David

    For 37 states in the United States, Project Wild has become an officially sanctioned, distributed and funded "environemtnal and conservation education program." For those who are striving to implement focused, sequential, learning programs, as well as those who wish to promote harmony through a non-anthropocentric world view, Project Wild may…

  12. biosemiotics turning wild

    E-print Network

    Markos, Anton

    biosemiotics turning wild essays in honour of kalevi kull on the occasion of his 60th birthday #12;Biosemiotics Turning Wild. Essays in Honour of Kalevi Kull on the Occasion of His 60th Birthday. Edited by Timo anthropology, Actor Network Theory and the concepts of nature in a biosemiotics based on Jakob von Uexküll

  13. A Wild Pony of Assateague

    USGS Multimedia Gallery

    A wild pony on Assateague Island. Wild ponies have lived on Assateague since the 1600s, although how they were introduced to Assateague is still debated. There are now around 300 or so wild ponies in Maryland and Virginia....

  14. Wild Ponies on Assateague Island

    USGS Multimedia Gallery

    Wild ponies on Assateague Island. Wild ponies have lived on Assateague since the 1600s, although how they were introduced to Assateague is still debated. There are now around 300 or so wild ponies in Maryland and Virginia....

  15. Comparisons of Ectomycorrhizal Colonization of Transgenic American Chestnut with Those of the Wild Type, a Conventionally Bred Hybrid, and Related Fagaceae Species

    PubMed Central

    D'Amico, Katherine M.; Horton, Thomas R.; Maynard, Charles A.; Stehman, Stephen V.; Oakes, Allison D.

    2014-01-01

    American chestnut (Castanea dentata [Marsh.] Borkh.) dominated the eastern forests of North America, serving as a keystone species both ecologically and economically until the introduction of the chestnut blight, Cryphonectria parasitica, functionally eradicated the species. Restoration efforts include genetic transformation utilizing genes such as oxalate oxidase to produce potentially blight-resistant chestnut trees that could be released back into the native range. However, before such a release can be undertaken, it is necessary to assess nontarget impacts. Since oxalate oxidase is meant to combat a fungal pathogen, we are particularly interested in potential impacts of this transgene on beneficial fungi. This study compares ectomycorrhizal fungal colonization on a transgenic American chestnut clone expressing enhanced blight resistance to a wild-type American chestnut, a conventionally bred American-Chinese hybrid chestnut, and other Fagaceae species. A greenhouse bioassay used soil from two field sites with different soil types and land use histories. The number of colonized root tips was counted, and fungal species were identified using morphology, restriction fragment length polymorphism (RFLP), and DNA sequencing. Results showed that total ectomycorrhizal colonization varied more by soil type than by tree species. Individual fungal species varied in their colonization rates, but there were no significant differences between colonization on transgenic and wild-type chestnuts. This study shows that the oxalate oxidase gene can increase resistance against Cryphonectria parasitica without changing the colonization rate for ectomycorrhizal species. These findings will be crucial for a potential deregulation of blight-resistant American chestnuts containing the oxalate oxidase gene. PMID:25326296

  16. Brassicaceae (Mustard family) Wild mustard

    E-print Network

    Brassicaceae (Mustard family) Wild mustard Sinapis arvensis L. Life cycle Erect winter or summer an. Wild mustard lower leaf. Back to identifying Christmas tree weeds. #12;Brassicaceae (Mustard family to purple seeds. Reproduction Seeds. Wild mustard continued Wild mustard fruit. Kidney-shaped cotyledons

  17. Polygonaceae (Smartweed family) Wild buckwheat

    E-print Network

    Polygonaceae (Smartweed family) Wild buckwheat Polygonum convolvulus L. Life cycle Twining summer- to triangle- shaped with a pointed tip and smooth margins. Fruit of wild buckwheat. Wild buckwheat seedling. Wild buckwheat plant. Back to identifying Christmas tree weeds. #12;Polygonaceae (Smartweed family

  18. High-resolution mapping of a major effect QTL from wild tomato Solanum habrochaites that influences water relations under root chilling.

    PubMed

    Arms, Erin M; Bloom, Arnold J; St Clair, Dina A

    2015-09-01

    QTL stm9 controlling rapid-onset water stress tolerance in S. habrochaites was high-resolution mapped to a chromosome 9 region that contains genes associated with abiotic stress tolerances. Wild tomato (Solanum habrochaites) exhibits tolerance to abiotic stresses, including drought and chilling. Root chilling (6 °C) induces rapid-onset water stress by impeding water movement from roots to shoots. S. habrochaites responds to such changes by closing stomata and maintaining shoot turgor, while cultivated tomato (S. lycopersicum) fails to close stomata and wilts. This response (shoot turgor maintenance under root chilling) is controlled by a major QTL (designated stm9) on chromosome 9, which was previously fine-mapped to a 2.7-cM region. Recombinant sub-near-isogenic lines for chromosome 9 were marker-selected, phenotyped for shoot turgor maintenance under root chilling in two sets of replicated experiments (Fall and Spring), and the data were used to high-resolution map QTL stm9 to a 0.32-cM region. QTL mapping revealed a single QTL that was coincident for both the Spring and Fall datasets, suggesting that the gene or genes contributing to shoot turgor maintenance under root chilling reside within the marker interval H9-T1673. In the S. lycopersicum reference genome sequence, this chromosome 9 region is gene-rich and contains representatives of gene families that have been associated with abiotic stress tolerance. PMID:26044122

  19. Subcellular localization of SREBP1 depends on its interaction with the C-terminal region of wild-type and disease related A-type lamins

    SciTech Connect

    Duband-Goulet, Isabelle; Woerner, Stephanie; Gasparini, Sylvaine; Attanda, Wikayatou; Konde, Emilie; Tellier-Lebegue, Carine; Craescu, Constantin T.; Roussel, Pascal; Vadrot, Nathalie; Vicart, Patrick; Oestlund, Cecilia; Worman, Howard J.; and others

    2011-12-10

    Lamins A and C are nuclear intermediate filament proteins expressed in most differentiated somatic cells. Previous data suggested that prelamin A, the lamin A precursor, accumulates in some lipodystrophy syndromes caused by mutations in the lamin A/C gene, and binds and inactivates the sterol regulatory element binding protein 1 (SREBP1). Here we show that, in vitro, the tail regions of prelamin A, lamin A and lamin C bind a polypeptide of SREBP1. Such interactions also occur in HeLa cells, since expression of lamin tail regions impedes nucleolar accumulation of the SREBP1 polypeptide fused to a nucleolar localization signal sequence. In addition, the tail regions of A-type lamin variants that occur in Dunnigan-type familial partial lipodystrophy of (R482W) and Hutchison Gilford progeria syndrome ( Increment 607-656) bind to the SREBP1 polypeptide in vitro, and the corresponding FLAG-tagged full-length lamin variants co-immunoprecipitate the SREBP1 polypeptide in cells. Overexpression of wild-type A-type lamins and variants favors SREBP1 polypeptide localization at the intranuclear periphery, suggesting its sequestration. Our data support the hypothesis that variation of A-type lamin protein level and spatial organization, in particular due to disease-linked mutations, influences the sequestration of SREBP1 at the nuclear envelope and thus contributes to the regulation of SREBP1 function.

  20. Xv4-vrxv4: a new gene-for-gene interaction identified between Xanthomonas campestris pv. vesicatoria race T3 and wild tomato relative Lycopersicon pennellii.

    PubMed

    Astua-Monge, G; Minsavage, G V; Stall, R E; Vallejos, C E; Davis, M J; Jones, J B

    2000-12-01

    Strains of tomato race 3 (T3) of Xanthomonas campestris pv. vesicatoria elicit a hypersensitive response (HR) in leaves of Lycopersicon pennellii LA716. Genetic segregation of the resistance exhibited ratios near 3:1 in F2 populations, which confirmed that a single dominant gene controlled the inheritance of this trait. With the aid of a collection of introgression lines, restriction fragment length polymorphism, and cleaved amplified polymorphic sequence markers, the resistance locus was located on chromosome 3 between TG599 and TG134. An avirulence gene named avrXv4 was also isolated by mobilizing a total of 600 clones from a genomic DNA library of the T3 strain 91-118 into the X. campestris pv. vesicatoria strain ME90, virulent on L. pennellii. One cosmid clone, pXcvT3-60 (29-kb insert), induced HR in resistant plants. The avirulent phenotype of pXcvT3-60 was confirmed by comparing growth rates in planta and electrolyte leakages among transconjugants carrying a mutated or intact clone with the wild-type T3 strain 91-118. A 1.9-kb DNA fragment contained within a 6.8-kb active subclone was sequenced and was determined to carry an open reading frame of 1,077 bp. The predicted AvrXv4 protein exhibits high similarity to members of an emerging new family of bacterial proteins from plant and mammalian pathogens comprising AvrRxv, AvrBsT, YopJ, YopP, AvrA, and YL40. PMID:11106027

  1. Wild genius - domestic fool? Spatial learning abilities of wild and domestic guinea pigs

    PubMed Central

    2010-01-01

    Background Domestic animals and their wild relatives differ in a wide variety of aspects. The process of domestication of the domestic guinea pig (Cavia aperea f. porcellus), starting at least 4500 years ago, led to changes in the anatomy, physiology, and behaviour compared with their wild relative, the wild cavy, Cavia aperea. Although domestic guinea pigs are widely used as a laboratory animal, learning and memory capabilities are often disregarded as being very scarce. Even less is known about learning and memory of wild cavies. In this regard, one striking domestic trait is a reduction in relative brain size, which in the domesticated form of the guinea pig amounts to 13%. However, the common belief, that such a reduction of brain size in the course of domestication of different species is accomplished by less learning capabilities is not at all very well established in the literature. Indeed, domestic animals might also even outperform their wild conspecifics taking advantage of their adaptation to a man-made environment. In our study we compared the spatial learning abilities of wild and domestic guinea pigs. We expected that the two forms are different regarding their learning performance possibly related to the process of domestication. Therefore wild cavies as well as domestic guinea pigs of both sexes, aged 35 to 45 days, were tested in the Morris water maze to investigate their ability of spatial learning. Results Both, wild cavies and domestic guinea pigs were able to learn the task, proving the water maze to be a suitable test also for wild cavies. Regarding the speed of learning, male as well as female domestic guinea pigs outperformed their wild conspecifics significantly. Interestingly, only domestic guinea pigs showed a significant spatial association of the platform position, while other effective search strategies were used by wild cavies. Conclusion The results demonstrate that domestic guinea pigs do not at all perform worse than their wild relatives in tests of spatial learning abilities. Yet, the contrary seems to be true. Hence, artificial selection and breeding did not lead to a cognitive decline but rather to an adaptation to man-made environment that allows solving the task more efficiently. PMID:20334697

  2. Distinct Lineages of Bufavirus in Wild Shrews and Nonhuman Primates.

    PubMed

    Sasaki, Michihito; Orba, Yasuko; Anindita, Paulina D; Ishii, Akihiro; Ueno, Keisuke; Hang'ombe, Bernard M; Mweene, Aaron S; Ito, Kimihito; Sawa, Hirofumi

    2015-07-01

    Viral metagenomic analysis identified a new parvovirus genome in the intestinal contents of wild shrews in Zambia. Related viruses were detected in spleen tissues from wild shrews and nonhuman primates. Phylogenetic analyses showed that these viruses are related to human bufaviruses, highlighting the presence and genetic diversity of bufaviruses in wildlife. PMID:26079728

  3. Frozen Wild River

    USGS Multimedia Gallery

    The USGS gages the Wild River at Gilead, Maine at station 01054200. This photo was taken during a winter trip to the site. During this trip, the gage equipment was checked and a discharge measurement was made by drilling holes through the ice and lowering velocity meters into the water....

  4. Marc Chagall: "Wild Poppies."

    ERIC Educational Resources Information Center

    White, Carolyn

    1987-01-01

    Based on a full-color reproduction of Marc Chagall's painting, "Wild Poppies," the goals of this lesson plan are to introduce students to artist's use of dreams and memories in making art, to communicate the idea that artists include their visual memories of people and things they love in their artwork, and to introduce the concepts of line and…

  5. Flooded Wild Rice River

    USGS Multimedia Gallery

    Wild Rice River at Great Bend North Dakota, streamflow 1,890 cubic feet per second.  Photograph taken during spring 2010 flooding looking downstream of the bridge which was clogged with debris.  The river also had flooded over the road approaching the bridge....

  6. Blastomycosis in wild wolves

    USGS Publications Warehouse

    Thiel, R.P.; Mech, L.D.; Ruth, G.R.; Archer, J.R.; Kaufman, L.

    1987-01-01

    Blastomycosis was fatal to a wild wolf in Minnesota, and serologic evidence of blastomycosis was found in a Wisconsin wolf. No unusual movements were detected in the Minnesota animal from October 1983 through October 1985. However, by early December 1985, this wolf was weak and debilitated, and it perished on 14 December after approaching a human residence.

  7. Endangered Species: Wild & Rare.

    ERIC Educational Resources Information Center

    Braus, Judy, Ed.

    1987-01-01

    Ranger Rick's NatureScope is a creative education series dedicated to inspiring in children an understanding and appreciation of the natural world while developing the skills they will need to make responsible decisions about the environment. The topic of this issue is "Endangered Species: Wild and Rare." Contents are organized into the following…

  8. A Novel Group of Avian Astroviruses in Wild Aquatic Birds

    PubMed Central

    Chu, Daniel K. W.; Leung, Connie Y. H.; Perera, Harsha K. K.; Ng, Erica M.; Gilbert, Martin; Joyner, Priscilla H.; Grioni, Alessandro; Ades, Gary; Guan, Yi

    2012-01-01

    Using a pan-astrovirus reverse transcription-PCR assay, a great diversity of novel avastroviruses was detected from wild bird and poultry samples. Two groups of astroviruses detected from wild birds are genetically related or highly similar to previously known viruses in poultry. Most interestingly, a novel group of astroviruses was detected in wild aquatic birds. Our results also reveal that different groups of astroviruses might have difference host ranges. This study has expanded our understanding regarding avastrovirus ecology. PMID:23035212

  9. Gathering and Preparing Wild Foods

    ERIC Educational Resources Information Center

    Curry, A. Dudley; Williams, Robert A.

    1975-01-01

    Discussed are the applications of gathering and preparing wild foods to environmental, survival, career, and community education programs. It recommends wild foods activities be used to stimulate social and historical studies of "return-to-nature" life styles. Wild food study also emphasizes man as part of the environment. (MR)

  10. Nutritional Properties of Some Edible Wild Mushrooms in Sabah

    NASA Astrophysics Data System (ADS)

    Kian Shin, Chong; Fook Yee, Chye; Jau Shya, Lee; Atong, Markus

    Ten edible wild mushrooms that were commonly consumed by the native of Sabah were identified as Lentinellus omphallodes, Lentinus cilliatus, Pleurotus sp1, Pleurotus sp2, Schizophyllum commune, Hygrocybe sp., Volvariella sp., Auricularia auricula, Trametes sp. The nutritive value of these wild mushrooms was determined. The protein content of the mushrooms ranged from 5-15% of dry weight, whereas most of the wild species were found to have low fat content (1-5%). Potassium is the most abundant mineral, followed by magnesium and calcium. The sodium concentration was relatively low in all wild mushrooms. However, the calcium content in Pleurotus sp1 is 10 times higher than the cultivated mushrooms. Overall, the trace element concentrations across all wild mushrooms were in the order Fe>Zn>Mn>Cu>Cr. The high protein and low fat characteristic of these wild mushrooms indicating the need to further determine their amino acid and fatty acid profiles.

  11. Wild Duck Cluster

    NASA Technical Reports Server (NTRS)

    2005-01-01

    On April 7, 2005, the Deep Impact spacecraft's Impactor Target Sensor camera recorded this image of M11, the Wild Duck cluster, a galactic open cluster located 6 thousand light years away. The camera is located on the impactor spacecraft, which will image comet Tempel 1 beginning 22 hours before impact until about 2 seconds before impact. Impact with comet Tempel 1 is planned for July 4, 2005.

  12. Wild Reading: This Madness to Our Method

    ERIC Educational Resources Information Center

    Mishra Tarc, Aparna Rita

    2013-01-01

    My paper theorizes the possibilities of a qualitative method that engages with promiscuous aspects of human existence and difference foreclosed by established research methods and representations. I locate the not known of knowledge in the unconscious time of the maternal relation where the infant is put upon to wildly and without symbolic…

  13. IN PURSUIT OF WILD WESTERN SUNFLOWERS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    For many domesticated crops, germplasm from wild relatives has provided a source of genes for crop improvement leading to disease resistance and tolerance for biotic stresses such as drought and salinity. To ensure that the sunflower collection in the National Plant Germplasm System (NPGS) contains ...

  14. Population structure and conservation of wild Pyrus communis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The wild relatives of the edible European pears (Pyrus communis L.) are native to Central Asia and Eastern Europe. We have sampled 260 individuals of wild-collected Pyrus communis ssp. caucasica and Pyrus communis ssp. pyraster from their native habitats and used 13 microsatellite markers to determ...

  15. DIVERSITY OF WILD PYRUS COMMUNIS BASED ON MICROSATELLITE ANALYSES

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Edible European pears (Pyrus communis subsp. communis L.) are derived from wild relatives native to the Caucasus Mountain region and Eastern Europe. Microsatellite markers (13 loci) were used to determine the relationships among 145 wild and cultivated individuals of P. communis maintained in the N...

  16. WILD POTATOES (SOLANUM SECTION PETOTA) OF NORTH AND CENTRAL AMERICA

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Solanum section Petota, the potato and its wild relatives, contains about 200 wild species distributed from the southwestern United States, to central Argentina and adjacent Chile. Although most species occur in South America, a secondary center of diversity peaks at 20 degrees north in the central ...

  17. 29 CFR 780.114 - Wild commodities.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ...Commodities § 780.114 Wild commodities. Employees engaged in the gathering or harvesting of wild commodities such as mosses, wild rice, burls and laurel plants, the trapping of wild animals, or the appropriation of minerals and other...

  18. 29 CFR 780.114 - Wild commodities.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ...Commodities § 780.114 Wild commodities. Employees engaged in the gathering or harvesting of wild commodities such as mosses, wild rice, burls and laurel plants, the trapping of wild animals, or the appropriation of minerals and other...

  19. 29 CFR 780.114 - Wild commodities.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ...Commodities § 780.114 Wild commodities. Employees engaged in the gathering or harvesting of wild commodities such as mosses, wild rice, burls and laurel plants, the trapping of wild animals, or the appropriation of minerals and other...

  20. 29 CFR 780.114 - Wild commodities.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ...Commodities § 780.114 Wild commodities. Employees engaged in the gathering or harvesting of wild commodities such as mosses, wild rice, burls and laurel plants, the trapping of wild animals, or the appropriation of minerals and other...

  1. 29 CFR 780.114 - Wild commodities.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ...Commodities § 780.114 Wild commodities. Employees engaged in the gathering or harvesting of wild commodities such as mosses, wild rice, burls and laurel plants, the trapping of wild animals, or the appropriation of minerals and other...

  2. The Gut Microbiota of Wild Mice

    PubMed Central

    Weldon, Laura; Abolins, Stephen; Lenzi, Luca; Bourne, Christian; Riley, Eleanor M.; Viney, Mark

    2015-01-01

    The gut microbiota profoundly affects the biology of its host. The composition of the microbiota is dynamic and is affected by both host genetic and many environmental effects. The gut microbiota of laboratory mice has been studied extensively, which has uncovered many of the effects that the microbiota can have. This work has also shown that the environments of different research institutions can affect the mouse microbiota. There has been relatively limited study of the microbiota of wild mice, but this has shown that it typically differs from that of laboratory mice (and that maintaining wild caught mice in the laboratory can quite quickly alter the microbiota). There is also inter-individual variation in the microbiota of wild mice, with this principally explained by geographical location. In this study we have characterised the gut (both the caecum and rectum) microbiota of wild caught Mus musculus domesticus at three UK sites and have investigated how the microbiota varies depending on host location and host characteristics. We find that the microbiota of these mice are generally consistent with those described from other wild mice. The rectal and caecal microbiotas of individual mice are generally more similar to each other, than they are to the microbiota of other individuals. We found significant differences in the diversity of the microbiotas among mice from different sample sites. There were significant correlations of microbiota diversity and body weight, a measure of age, body-mass index, serum concentration of leptin, and virus, nematode and mite infection. PMID:26258484

  3. Genomic heritability estimation for the early life-history transition related to propensity to migrate in wild rainbow and steelhead trout populations

    PubMed Central

    Hu, Guo; Wang, Chunkao; Da, Yang

    2014-01-01

    A previous genomewide association study (GWAS) identified SNP markers associated with propensity to migrate of rainbow and steelhead trout (Oncorhynchus mykiss) in a connected population with free access to the ocean in Upper Yakima River (UYR) and a population in Upper Mann Creek (UMC) that has been sequestered from its access to the ocean for more than 50 years. Applying genomic heritability estimation using the same dataset, we found that smoltification in the UYR population were almost completely determined by additive effects, with 95.5% additive heritability and 4.5% dominance heritability, whereas smoltification in the UMC population had substantial dominance effects, with 0% additive heritability and 39.3% dominance heritability. Dominance test detected one SNP marker (R30393) with significant dominance effect on smoltification (P = 1.98 × 10?7). Genomic-predicted additive effects completely separated migratory and nonmigratory fish in the UYR population, whereas genomic-predicted dominance effects achieved such complete separation in the UMC population. The UMC population had higher genomic additive and dominance correlations than the UYR population, and fish between these two populations had the least genomic correlations. These results suggested that blocking the free access to the ocean may have reduced genetic diversity and increased genomic similarity associated with the early life-history transition related to propensity to migrate. PMID:24834334

  4. The spatial scale of genetic differentiation in a model organism: the wild yeast

    E-print Network

    Fussman, Gregor

    The spatial scale of genetic differentiation in a model organism: the wild yeast Saccharomyces relative of the model eukaryote Saccharomyces cerevisiae (bakers' yeast). Unlike its more famous relative

  5. Teaching in wild meerkats.

    PubMed

    Thornton, Alex; McAuliffe, Katherine

    2006-07-14

    Despite the obvious benefits of directed mechanisms that facilitate the efficient transfer of skills, there is little critical evidence for teaching in nonhuman animals. Using observational and experimental data, we show that wild meerkats (Suricata suricatta) teach pups prey-handling skills by providing them with opportunities to interact with live prey. In response to changing pup begging calls, helpers alter their prey-provisioning methods as pups grow older, thus accelerating learning without the use of complex cognition. The lack of evidence for teaching in species other than humans may reflect problems in producing unequivocal support for the occurrence of teaching, rather than the absence of teaching. PMID:16840701

  6. Mortality rates among wild chimpanzees.

    PubMed

    Hill, K; Boesch, C; Goodall, J; Pusey, A; Williams, J; Wrangham, R

    2001-05-01

    In order to compare evolved human and chimpanzees' life histories we present a synthetic life table for free-living chimpanzees, derived from data collected in five study populations (Gombe, Taï, Kibale, Mahale, Bossou). The combined data from all populations represent 3711 chimpanzee years at risk and 278 deaths. Males show higher mortality than females and data suggest some inter-site variation in mortality. Despite this variation, however, wild chimpanzees generally have a life expectancy at birth of less than 15 years and mean adult lifespan (after sexual maturity) is only about 15 years. This is considerably lower survival than that reported for chimpanzees in zoos or captive breeding colonies, or that measured among modern human hunter-gatherers. The low mortality rate of human foragers relative to chimpanzees in the early adult years may partially explain why humans have evolved to senesce later than chimpanzees, and have a longer juvenile period. PMID:11322804

  7. Consumer beliefs regarding farmed versus wild fish.

    PubMed

    Claret, Anna; Guerrero, Luis; Ginés, Rafael; Grau, Amàlia; Hernández, M Dolores; Aguirre, Enaitz; Peleteiro, José Benito; Fernández-Pato, Carlos; Rodríguez-Rodríguez, Carmen

    2014-08-01

    Aquaculture is a food-producing activity, alternative to traditional extractive fishing, which still acts as a reference for most consumers. The main objective of the present paper was to study which consumer beliefs, regarding farmed versus wild fish, hinder the potential development of the aquaculture sector. To achieve this purpose the study was organized into two complementary steps: a qualitative approach (focus groups) aimed at assessing consumer perception about wild and farmed fish and to identify the salient beliefs that differentiate them; and a quantitative approach (survey by means of a questionnaire) to validate the results obtained in the focus group discussions over a representative sample of participants (n = 919). Results showed that participants perceive clear differences between farmed and wild fish. Although no significant differences between both kinds of fish were detected on safety, in general farmed fish was perceived to be less affected by marine pollution, heavy metals and parasites. In the contrary, wild fish was considered to have healthier feeding, to contain fewer antibiotics and to be fresher, healthier, less handled and more natural. Beliefs related to quality were in favour of wild fish, while those related to availability and price were in favour of farmed fish. Significant differences were observed in the perception of both kinds of fish depending on the consumers' objective knowledge about fish, on the level of education, age and gender and on the three segments of consumers identified: "Traditional/Conservative", "Connoisseur", "Open to aquaculture". The results provided could play an important role when planning and designing efficient marketing strategies for promoting farmed fish by adapting the information provided to the perception of each segment of consumers identified by the present study. PMID:24709486

  8. WILD CHIMPANZEE FOUNDATION Volunteer Position

    E-print Network

    WILD CHIMPANZEE FOUNDATION Volunteer Position GIS specialist and Assistant field coordinator: The Wild Chimpanzee Foundation (WCF), is an international NGO established in several countries such as Côte in Zwedru, Grand Gedeh County, Liberia, the volunteer will be required to assist the Field Coordinator

  9. Laboratory Animal Management: Wild Birds.

    ERIC Educational Resources Information Center

    National Academy of Sciences - National Research Council, Washington, DC. Inst. of Lab. Animal Resources.

    This is a report on the care and use of wild birds in captivity as research animals. Chapters are presented on procurement and identification, housing, nutrition, health of birds and personnel, reproduction in confinement, and surgical procedures. Also included are addresses of federal, state, and provencial regulatory agencies concerned with wild

  10. Sleeping distance in wild wolf packs

    USGS Publications Warehouse

    Knick, S.T.; Mech, L.D.

    1980-01-01

    Sleeping distances were observed among members of 13 wild wolf (Canis lupus) packs and 11 pairs in northeastern Minnesota to determine if the distances correlated with pack size and composition. The study utilized aerial radio-tracking and observation during winter. Pack size and number of adults per pack were inversely related to pack average sleeping distance and variability. No correlation between sleeping distance and microclimate was observed. Possible relationships between social bonding and our results are discussed.

  11. Wild Turkeys in California:Wild Turkeys in California: Introduced or Reintroduced?Introduced or Reintroduced?

    E-print Network

    Gray, Matthew

    11/6/2008 1 Wild Turkeys in California:Wild Turkeys in California: Introduced or Reintroduced turkeyturkey History of wild turkeysHistory of wild turkeys in Californiain California Restoration efforts OcellatedOcellated (Meleagris ocellata)(Meleagris ocellata) Wild turkeyWild turkey (Meleagris gallapavo

  12. Facultative parthenogenesis discovered in wild vertebrates

    PubMed Central

    Booth, Warren; Smith, Charles F.; Eskridge, Pamela H.; Hoss, Shannon K.; Mendelson, Joseph R.; Schuett, Gordon W.

    2012-01-01

    Facultative parthenogenesis (FP)—asexual reproduction by bisexual species—has been documented in a variety of multi-cellular organisms but only recently in snakes, varanid lizards, birds and sharks. Unlike the approximately 80 taxa of unisexual reptiles, amphibians and fishes that exist in nature, FP has yet to be documented in the wild. Based on captive documentation, it appears that FP is widespread in squamate reptiles (snakes, lizards and amphisbaenians), and its occurrence in nature seems inevitable, yet the task of detecting FP in wild individuals has been deemed formidable. Here we show, using microsatellite DNA genotyping and litter characteristics, the first cases of FP in wild-collected pregnant females and their offspring of two closely related species of North American pitviper snakes—the copperhead (Agkistrodon contortrix) and cottonmouth (Agkistrodon piscivorus). Our findings support the view that non-hybrid origins of parthenogenesis, such as FP, are more common in squamates than previously thought. With this confirmation, FP can no longer be viewed as a rare curiosity outside the mainstream of vertebrate evolution. Future research on FP in squamate reptiles related to proximate control of induction, reproductive competence of parthenogens and population genetics modelling is warranted. PMID:22977071

  13. Fitness of Crop-Wild Hybrid Sunflower under Competitive Conditions: Implications for Crop-to-Wild Introgression

    PubMed Central

    Mercer, Kristin L.; Emry, D. Jason; Snow, Allison A.; Kost, Matthew A.; Pace, Brian A.; Alexander, Helen M.

    2014-01-01

    Understanding the likelihood and extent of introgression of novel alleles in hybrid zones requires comparison of lifetime fitness of parents and hybrid progeny. However, fitness differences among cross types can vary depending on biotic conditions, thereby influencing introgression patterns. Based on past work, we predicted that increased competition would enhance introgression between cultivated and wild sunflower (Helianthus annuus) by reducing fitness advantages of wild plants. To test this prediction, we established a factorial field experiment in Kansas, USA where we monitored the fitness of four cross types (Wild, F1, F2, and BCw hybrids) under different levels of interspecific and intraspecific competition. Intraspecific manipulations consisted both of density of competitors and of frequency of crop-wild hybrids. We recorded emergence of overwintered seeds, survival to reproduction, and numbers of seeds produced per reproductive plant. We also calculated two compound fitness measures: seeds produced per emerged seedling and seeds produced per planted seed. Cross type and intraspecific competition affected emergence and survival to reproduction, respectively. Further, cross type interacted with competitive treatments to influence all other fitness traits. More intense competition treatments, especially related to density of intraspecific competitors, repeatedly reduced the fitness advantage of wild plants when considering seeds produced per reproductive plant and per emerged seedling, and F2 plants often became indistinguishable from the wilds. Wild fitness remained superior when seedling emergence was also considered as part of fitness, but the fitness of F2 hybrids relative to wild plants more than quadrupled with the addition of interspecific competitors and high densities of intraspecific competitors. Meanwhile, contrary to prediction, lower hybrid frequency reduced wild fitness advantage. These results emphasize the importance of taking a full life cycle perspective. Additionally, due to effects of exogenous selection, a given hybrid generation may be especially well-suited to hastening introgression under particular environmental conditions. PMID:25295859

  14. [Wild is not really wild: brain weight of wild domestic mammals].

    PubMed

    Röhrs, M; Ebinger, P

    1999-01-01

    Domestication leads to the reduction of brain weight, decreases reach from 8.1% in laboratory rats up to 33.6% in domesticated pigs. The question is: Do brain weights increase by feralization? We compared the brain weights of domesticated mammals (cat, dog, pig, goat, ass) with their feral forms. In none of the cases studied, brain weight is increased in wild domestic mammals. So, feral mammals do not return back to the status of their wild species. PMID:10472721

  15. Dental eruption in East African wild chimpanzees.

    PubMed

    Machanda, Zarin; Brazeau, Nick F; Bernard, Andrew B; Donovan, Ronan M; Papakyrikos, Amanda M; Wrangham, Richard; Smith, Tanya M

    2015-05-01

    Knowledge of chimpanzee development has played an essential role in our understanding of the evolution of human ontogeny. However, recent studies of wild ape dentitions have cast doubt on the use of developmental standards derived from captive individuals. Others have called into question the use of deceased wild individuals to infer normative development. We conducted a high resolution photographic study of living known-age subadults in the Kanyawara community (Kibale National Park, Uganda) to generate a comprehensive three year record of dental eruption (including tooth emergence ages). These non-invasive data allow comparisons of captive and wild chimpanzees, establish accurate developmental standards for relatively healthy wild individuals, and facilitate direct assessments of primate-wide associations between dental development and life history. Emergence ages in the Kanyawara chimpanzees are very similar to living Gombe chimpanzees, and are broadly comparable to deceased Taï Forest chimpanzees. Early-emerging teeth such as the deciduous dentition and first molar (M1) appear during a time of maternal dependence, and are almost indistinguishable from captive chimpanzee emergence ages, while later forming teeth in the Kanyawara population emerge in the latter half of captive age ranges or beyond. Five juveniles whose lower M1s emerged by or before 3.3 years of age continued to nurse for a year or more beyond M1 emergence, and their mothers showed considerable variation in reproductive rates. The third molars of two adolescent females emerged several months to several years prior to the birth of their first offspring. Given that broad primate-wide relationships between molar emergence and life history do not necessarily hold within this population of chimpanzees, particularly for variables that are reported to be coincident with molar emergence, we suggest that further study is required in order to predict life history variables in hominins or hominoids. PMID:25796539

  16. Genome diversity in wild grasses under environmental stress

    PubMed Central

    Fitzgerald, Timothy L.; Shapter, Frances M.; McDonald, Stuart; Waters, Daniel L. E.; Chivers, Ian H.; Drenth, Andre; Nevo, Eviatar; Henry, Robert J.

    2011-01-01

    Patterns of diversity distribution in the Isa defense locus in wild-barley populations suggest adaptive selection at this locus. The extent to which environmental selection may act at additional nuclear-encoded defense loci and within the whole chloroplast genome has now been examined by analyses in two grass species. Analysis of genetic diversity in wild barley (Hordeum spontaneum) defense genes revealed much greater variation in biotic stress-related genes than abiotic stress-related genes. Genetic diversity at the Isa defense locus in wild populations of weeping ricegrass [Microlaena stipoides (Labill.) R. Br.], a very distant wild-rice relative, was more diverse in samples from relatively hotter and drier environments, a phenomenon that reflects observations in wild barley populations. Whole-chloroplast genome sequences of bulked weeping ricegrass individuals sourced from contrasting environments showed higher levels of diversity in the drier environment in both coding and noncoding portions of the genome. Increased genetic diversity may be important in allowing plant populations to adapt to greater environmental variation in warmer and drier climatic conditions. PMID:22173638

  17. The control of classical swine fever in wild boar

    PubMed Central

    Moennig, Volker

    2015-01-01

    Classical swine fever (CSF) is a viral disease with severe economic consequences for domestic pigs. Natural hosts for the CSF virus (CSFV) are members of the family Suidae, i.e., Eurasian wild boar (sus scrofa) are also susceptible. CSF in wild boar poses a serious threat to domestic pigs. CSFV is an enveloped RNA virus belonging to the pestivirus genus of the Flaviviridae family. Transmission of the infection is usually by direct contact or by feeding of contaminated meat products. In recent decades CSF has been successfully eradicated from Australia, North America, and the European Union. In areas with dense wild boar populations CSF tends to become endemic whereas it is often self-limiting in small, less dense populations. In recent decades eradication strategies of CSF in wild boar have been improved considerably. The reduction of the number of susceptible animals to a threshold level where the basic reproductive number is R0 < 1 is the major goal of all control efforts. Depending on the epidemiological situation, hunting measures combined with strict hygiene may be effective in areas with a relatively low density of wild boar. Oral immunization was shown to be highly effective in endemic situations in areas with a high density of wild boar. PMID:26594202

  18. Wild Wolf Afflicted with Mange

    USGS Multimedia Gallery

    Researchers at the USGS Northern Rocky Mountain Science Center and their partners place thermal remote cameras near deer and elk carcasses in Yellowstone National Park to capture images of wolves with mange feeding in the wild. Red-colored blotches in the thermal images reveal areas o...

  19. Bee-Wild about Pollinators!

    ERIC Educational Resources Information Center

    Johnson, Bonnie; Kil, Jenny; Evans, Elaine; Koomen, Michele Hollingsworth

    2014-01-01

    With their sunny stripes and fuzzy bodies, bees are beloved--but unfortunately, they are in trouble. Bee decline, of both wild bees as well as managed bees like honey bees, has been in the news for the last several years. Habitat loss, diseases, pests, and pesticides have made it difficult for bees to survive in many parts of our world (Walsh…

  20. Biologists finally horn in on senescence in the wild.

    PubMed

    Spencer, Christine C; Promislow, Daniel E L

    2002-11-27

    In 1995, biologists discovered an unusual new species, the antler fly (Protophila litigata). Antler flies inhabit discarded moose and deer antlers for most of their life cycle, and male antler flies exhibit sexually selected behaviors on their home antlers. It now turns out that these curious flies might provide new insights into the evolution of aging. For years, biologists assumed that senescence did not occur in the wild. But over the past decade, several studies of natural populations of birds and mammals have found age-related declines in rates of reproduction or survival, indicating senescence. A new study of antler flies by Bonduriansky and Brassil provides the first evidence for senescence in a wild invertebrate. The researchers are able to mark individual flies and follow them throughout their entire, albeit short, life-spans. This small species offers huge opportunities to study senescence and age-related selection on fitness characters in the wild. PMID:14603017

  1. Hemoplasmas in wild canids and felids in Brazil.

    PubMed

    André, Marcos Rogerio; Adania, Cristina Harumi; Allegretti, Silmara Marques; Machado, Rosangela Zacarias

    2011-06-01

    Hemotropic mycoplasmas, epicellular erythrocytic bacterial parasites lacking a cell wall, are the causative agents of infectious anemia in numerous mammalian species. The presence of hemotropic mycoplasmas in blood samples of neotropical and exotic wild canids and felids from Brazilian zoos were recorded using molecular techniques. Blood samples were collected from 146 Brazilian wild felids, 19 exotic felids, 3 European wolves (Canis lupus), and from 97 Brazilian wild canids from zoos in the Brazilian states of São Paulo and Mato Grosso and the Federal District. Using conventional polymerase chain reaction (PCR), this work found 22 (13%) wild felids positive to Candidatus Mycoplasma haemominutum [4 jaguars (Panthera onca); 3 pumas (Puma concolor); 10 ocelots (Leopardus pardalis); 2 jaguarondis (Puma yagouaroundi); and 3 little spotted cats (Leopardus tigrinus)]. Only one little spotted cat (Leopardus tigrinus) was positive to Mycoplasma haemofelis, and none was positive to Candidatus Mycoplasma turicensis. Two bush dogs (Speothos venaticus) were positive for a Mycoplasma sp. closely related to Candidatus Mycoplasma haematoparvum, and two European wolves were positive for a Mycoplasma sp. closely related to Candidatus Mycoplasma haemominutum. This is the first study regarding the molecular detection of hemotropic mycoplasmas in wild canids. PMID:22946419

  2. Predicting the Wild Salmon Production Using Bayesian

    E-print Network

    Myllymäki, Petri

    Predicting the Wild Salmon Production Using Bayesian Networks Kimmo Valtonen, Tommi Mononen, Petri Karlsson and Ingemar Per¨a December 22, 2002 HIIT TECHNICAL REPORT 2002­7 #12;PREDICTING THE WILD SALMON elsewhere. #12;Predicting the wild salmon production using Bayesian networks Kimmo Valtonen, Tommi Mononen

  3. The End of the Wild Stephen Meyer

    E-print Network

    Hulme, Mike

    and haunting lament in 1990 for the end of nature, and the end of the wild may be seen as another in the series extirpation of the wild; i.e., "the growing dominance of human selection in evolution". Natural selectionMike Hulme The End of the Wild Stephen Meyer Massachusetts Institute of Technology, 97pp., £9

  4. Toxoplasmosis in wild and domestic animals

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Toxoplasma gondii is widely distributed in wild and domestic animals. The present chapter reviews toxoplasmosis in wild and domestic animals. Coverage in wild animal species is limited to confirmed cases of toxoplasmosis, cases with parasite isolation, cases with parasite detection by PCR, and exper...

  5. Population Biology of Aging in the Wild

    E-print Network

    Ishida, Yuko

    Population Biology of Aging in the Wild Deborah A. Roach1 and James R. Carey2 1 Department Keywords senescence, life span, long-lived, age-dependent, biodemography, wild population, elderly Abstract Empirical studies reveal aging occurs in wild populations. Consideration of the ecological and evolutionary

  6. The presence of Bt-transgenic oilseed rape in wild mustard populations affects plant growth.

    PubMed

    Liu, Yongbo; Stewart, C Neal; Li, Junsheng; Huang, Hai; Zhang, Xitao

    2015-12-01

    The adventitious presence of transgenic plants in wild plant populations is of ecological and regulatory concern, but the consequences of adventitious presence are not well understood. Here, we introduced Bacillus thuringiensis Cry1Ac (Bt)-transgenic oilseed rape (Bt OSR, Brassica napus) with various frequencies into wild mustard (Brassica juncea) populations. We sought to better understand the adventitious presence of this transgenic insecticidal crop in a wild-relative plant population. We assessed the factors of competition, resource availability and diamondback moth (Plutella xylostella) infestation on plant population dynamics. As expected, Bt OSR performed better than wild mustard in mixed populations under herbivore attack in habitats with enough resources, whereas wild mustard had higher fitness when Bt OSR was rarer in habitats with limited resources. Results suggest that the presence of insect-resistant transgenic plants could decrease the growth of wild mustard and Bt OSR plants and their populations, especially under high herbivore pressure. PMID:26338267

  7. Genetic structure of wild boar (Sus scrofa) populations from East Asia based on microsatellite loci analyses

    PubMed Central

    2014-01-01

    Background Wild boar, Sus scrofa, is an extant wild ancestor of the domestic pig as an agro-economically important mammal. Wild boar has a worldwide distribution with its geographic origin in Southeast Asia, but genetic diversity and genetic structure of wild boar in East Asia are poorly understood. To characterize the pattern and amount of genetic variation and population structure of wild boar in East Asia, we genotyped and analyzed microsatellite loci for a total of 238 wild boar specimens from ten locations across six countries in East and Southeast Asia. Results Our data indicated that wild boar populations in East Asia are genetically diverse and structured, showing a significant correlation of genetic distance with geographic distance and implying a low level of gene flow at a regional scale. Bayesian-based clustering analysis was indicative of seven inferred genetic clusters in which wild boars in East Asia are geographically structured. The level of genetic diversity was relatively high in wild boars from Southeast Asia, compared with those from Northeast Asia. This gradient pattern of genetic diversity is consistent with an assumed ancestral population of wild boar in Southeast Asia. Genetic evidences from a relationship tree and structure analysis suggest that wild boar in Jeju Island, South Korea have a distinct genetic background from those in mainland Korea. Conclusions Our results reveal a diverse pattern of genetic diversity and the existence of genetic differentiation among wild boar populations inhabiting East Asia. This study highlights the potential contribution of genetic variation of wild boar to the high genetic diversity of local domestic pigs during domestication in East Asia. PMID:25034725

  8. WILD PIG ATTACKS ON HUMANS

    SciTech Connect

    Mayer, J.

    2013-04-12

    Attacks on humans by wild pigs (Sus scrofa) have been documented since ancient times. However, studies characterizing these incidents are lacking. In an effort to better understand this phenomenon, information was collected from 412 wild pig attacks on humans. Similar to studies of large predator attacks on humans, data came from a variety of sources. The various attacks compiled occurred in seven zoogeographic realms. Most attacks occurred within the species native range, and specifically in rural areas. The occurrence was highest during the winter months and daylight hours. Most happened under non-hunting circumstances and appeared to be unprovoked. Wounded animals were the chief cause of these attacks in hunting situations. The animals involved were typically solitary, male and large in size. The fate of the wild pigs involved in these attacks varied depending upon the circumstances, however, most escaped uninjured. Most human victims were adult males traveling on foot and alone. The most frequent outcome for these victims was physical contact/mauling. The severity of resulting injuries ranged from minor to fatal. Most of the mauled victims had injuries to only one part of their bodies, with legs/feet being the most frequent body part injured. Injuries were primarily in the form of lacerations and punctures. Fatalities were typically due to blood loss. In some cases, serious infections or toxemia resulted from the injuries. Other species (i.e., pets and livestock) were also accompanying some of the humans during these attacks. The fates of these animals varied from escaping uninjured to being killed. Frequency data on both non-hunting and hunting incidents of wild pig attacks on humans at the Savannah River Site, South Carolina, showed quantitatively that such incidents are rare.

  9. Wheel running in the wild

    PubMed Central

    Meijer, Johanna H.; Robbers, Yuri

    2014-01-01

    The importance of exercise for health and neurogenesis is becoming increasingly clear. Wheel running is often used in the laboratory for triggering enhanced activity levels, despite the common objection that this behaviour is an artefact of captivity and merely signifies neurosis or stereotypy. If wheel running is indeed caused by captive housing, wild mice are not expected to use a running wheel in nature. This however, to our knowledge, has never been tested. Here, we show that when running wheels are placed in nature, they are frequently used by wild mice, also when no extrinsic reward is provided. Bout lengths of running wheel behaviour in the wild match those for captive mice. This finding falsifies one criterion for stereotypic behaviour, and suggests that running wheel activity is an elective behaviour. In a time when lifestyle in general and lack of exercise in particular are a major cause of disease in the modern world, research into physical activity is of utmost importance. Our findings may help alleviate the main concern regarding the use of running wheels in research on exercise. PMID:24850923

  10. Wheel running in the wild.

    PubMed

    Meijer, Johanna H; Robbers, Yuri

    2014-07-01

    The importance of exercise for health and neurogenesis is becoming increasingly clear. Wheel running is often used in the laboratory for triggering enhanced activity levels, despite the common objection that this behaviour is an artefact of captivity and merely signifies neurosis or stereotypy. If wheel running is indeed caused by captive housing, wild mice are not expected to use a running wheel in nature. This however, to our knowledge, has never been tested. Here, we show that when running wheels are placed in nature, they are frequently used by wild mice, also when no extrinsic reward is provided. Bout lengths of running wheel behaviour in the wild match those for captive mice. This finding falsifies one criterion for stereotypic behaviour, and suggests that running wheel activity is an elective behaviour. In a time when lifestyle in general and lack of exercise in particular are a major cause of disease in the modern world, research into physical activity is of utmost importance. Our findings may help alleviate the main concern regarding the use of running wheels in research on exercise. PMID:24850923

  11. Wild boar populations up, numbers of hunters down? A review of trends and implications for Europe.

    PubMed

    Massei, Giovanna; Kindberg, Jonas; Licoppe, Alain; Ga?i?, Dragan; Šprem, Nikica; Kamler, Ji?í; Baubet, Eric; Hohmann, Ulf; Monaco, Andrea; Ozoli?š, Janis; Cellina, Sandra; Podgórski, Tomasz; Fonseca, Carlos; Markov, Nickolay; Pokorny, Boštjan; Rosell, Carme; Náhlik, András

    2015-04-01

    Across Europe, wild boar numbers increased in the 1960s-1970s but stabilised in the 1980s; recent evidence suggests that the numbers and impact of wild boar has grown steadily since the 1980s. As hunting is the main cause of mortality for this species, we reviewed wild boar hunting bags and hunter population trends in 18 European countries from 1982 to 2012. Hunting statistics and numbers of hunters were used as indicators of animal numbers and hunting pressure. The results confirmed that wild boar increased consistently throughout Europe, while the number of hunters remained relatively stable or declined in most countries. We conclude that recreational hunting is insufficient to limit wild boar population growth and that the relative impact of hunting on wild boar mortality had decreased. Other factors, such as mild winters, reforestation, intensification of crop production, supplementary feeding and compensatory population responses of wild boar to hunting pressure might also explain population growth. As populations continue to grow, more human-wild boar conflicts are expected unless this trend is reversed. New interdisciplinary approaches are urgently required to mitigate human-wild boar conflicts, which are otherwise destined to grow further. PMID:25512181

  12. The Origin of Indian Corn and its Relatives

    E-print Network

    Mangelsdorf, Paul C. (Paul Christoph); Reeves, R. G. (Robert Gatlin)

    1939-01-01

    Introduction; Botanical Relationships of Maize; Previous Evidence on the Origin of Maize; Previous Theories on the Origin of Maize; New Evidence from Cytogenetic Studies; The Origin of Teosinte; The Origin of Maize; The ...

  13. Knemidocoptic mange in wild golden eagles, California, USA.

    PubMed

    Mete, Asl?; Stephenson, Nicole; Rogers, Krysta; Hawkins, Michelle G; Sadar, Miranda; Guzman, David Sanchez-Migallon; Bell, Douglas A; Smallwood, Kenneth S; Wells, Amy; Shipman, Jessica; Foley, Janet

    2014-10-01

    During 2012-2013 in California, USA, 3 wild golden eagles were found with severe skin disease; 2 died. The cause was a rare mite, most closely related to Knemidocoptes derooi mites. Cautionary monitoring of eagle populations, habitats, and diseases is warranted. PMID:25271842

  14. CHARACTERIZATION OF WILD MALUS POPULATIONS USING GENOTYPIC AND PHENOTYPIC TRAITS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Malus sieversii, a wild relative of domestic apple, represents an important source of genetic variation for several horticulturally important traits including fruit quality and disease resistance. Collections made by the USDA in Kazakhstan have now been analyzed to determine the extent of diversity...

  15. Knemidocoptic Mange in Wild Golden Eagles, California, USA

    PubMed Central

    Stephenson, Nicole; Rogers, Krysta; Hawkins, Michelle G.; Sadar, Miranda; Guzman, David Sanchez-Migallon; Bell, Douglas A.; Smallwood, Kenneth S.; Wells, Amy; Shipman, Jessica; Foley, Janet

    2014-01-01

    During 2012–2013 in California, USA, 3 wild golden eagles were found with severe skin disease; 2 died. The cause was a rare mite, most closely related to Knemidocoptes derooi mites. Cautionary monitoring of eagle populations, habitats, and diseases is warranted. PMID:25271842

  16. Colonization of wild potato plants by Streptomyces scabies

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The bacterial pathogen Streptomyces scabies produces lesions on potato tubers, reducing their marketability and profitability. M6 and 524-8 are two closely related inbred diploid lines of the wild potato species Solanum chacoense. After testing in both field and greenhouse assays, it was found that ...

  17. Analysis of wild-species introgressions in tomato inbreds uncovers ancestral origins

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Decades of intensive tomato breeding using wild germplasm has resulted in genomes of domesticated accessions (Solanum lycopersicum) to be intertwined with introgressions from their wild relatives. Here we present the first whole genome sequences of two tomato inbreds Gh13 and BTI87, both carrying a ...

  18. Diversity of wild Malus germplasm available in the USDA-ARS National Plant Germplasm System

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Plant explorers have visited Russia, Turkey, Kazakhstan, and China over the past twenty years to find populations of the wild relatives of apple (Malus). Seeds from wild populations of M. sieversii, M. orientalis, M. hupehensis, M. kansuensis, M. toringo, M. bhutanica, M. transitoria, and M. zhaojia...

  19. Changes in Gene Expression Associated with Reproductive Maturation in Wild Female Baboons

    E-print Network

    Alberts, Susan C

    . 2010). Some examples of these shifts include relatively late menarche in human hunter-gatherers in primate life history. However, this process is difficult to study at the molecular level in natural, wild primate population. Transcriptome Analysis and Life History in a Wild Primate Population Nonhuman

  20. Diversity in oil content and fatty acid profile in seeds of wild cassava germplasm

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Cassava (Manihot esculenta) is the only commercial species of the Manihot genus, cultivated for its starchy tuber roots. However, cassava seeds are known to be rich in oils and fats, there are scant reports on the content and properties of oil from cassava seeds and its wild relatives. Wild Manihot ...

  1. Identification and QTL mapping of blast resistance in wild Oryza species

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Leaf blast disease of rice (Oryza sativa L.) caused by Magnaporthe oryzae B. Couch is one of the most devastating rice fungal diseases worldwide. Wild relatives of rice (Oryza spp.) may contain novel genes for biotic and abiotic stress resistance lost during domestication. A collection of 67 wild ...

  2. American Journal of Botany 88(11): 21012112. 2001. GEOGRAPHIC DISTRIBUTION OF WILD POTATO SPECIES1

    E-print Network

    Spooner, David

    (Solanaceae sect. Petota) was analyzed using a database of 6073 georeferenced ob- servations. Wild potatoes; geographic information systems; potato; section Petota; Solanum; Solanaceae; species richness. The wild tuber-bearing Solanum L. species (Solanaceae sect. Petota Dumort.) and outgroup relatives in Solanum sect. Etu- berosum

  3. Characterisation of Streptococcus suis isolates from wild boars (Sus scrofa).

    PubMed

    Sánchez del Rey, Verónica; Fernández-Garayzábal, José F; Mentaberre, Gregorio; Briones, Víctor; Lavín, Santiago; Domínguez, Lucas; Gottschalk, Marcelo; Vela, Ana Isabel

    2014-06-01

    Wild boar are widely distributed throughout the Iberian Peninsula and can carry potentially virulent strains of Streptococcus suis. The objective of this study was to determine the prevalence of S. suis in wild boars from two large geographical regions of Spain. Serotypes 1, 2, 7 and 9 identified were further genetically characterised by virulence-associated genotyping, pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing (MLST) to determine the population structure of S. suis carried by these animals. Streptococcus suis was isolated from 39.1% of the wild boars examined: serotype 9 was the most frequently isolated (12.5%), followed by serotype 1 (2.5%). Serotype 2 was rarely isolated (0.3%). Eighteen additional serotypes were identified indicating wide diversity of this pathogen within the wild boar population. This heterogeneity was confirmed by PFGE and MLST analyses and the majority of isolates exhibited the virulence-associated genotype mrp-/epf-/sly-. The results of this study highlight that the carriage of S. suis by wild boars is commonplace. However, MLST data indicate that these isolates are not related to prevalent clonal complexes ST1, ST16, ST61 and ST87 typically associated with infection of pigs or humans in Europe. PMID:24726078

  4. Wild boar tuberculosis in Iberian Atlantic Spain: a different picture from Mediterranean habitats

    PubMed Central

    2013-01-01

    Background Infections with Mycobacterium bovis and closely related members of the Mycobacterium tuberculosis complex (MTC) are shared between livestock, wildlife and sporadically human beings. Wildlife reservoirs exist worldwide and can interfere with bovine tuberculosis (TB) eradication efforts. The Eurasian wild boar (Sus scrofa) is a MTC maintenance host in Mediterranean Iberia (Spain and Portugal). However, few systematic studies in wild boar have been carried out in Atlantic regions. We describe the prevalence, distribution, pathology and epidemiology of MTC and other mycobacteria from wild boar in Atlantic Spain. A total of 2,067 wild boar were sampled between 2008 and 2012. Results The results provide insight into the current status of wild boar as MTC and Mycobacterium avium complex (MAC) hosts in temperate regions of continental Europe. The main findings were a low TB prevalence (2.6%), a low proportion of MTC infected wild boar displaying generalized TB lesions (16.7%), and a higher proportion of MAC infections (4.5%). Molecular typing revealed epidemiological links between wild boar and domestic – cattle, sheep and goat – and other wildlife – Eurasian badger (Meles meles) and red fox (Vulpes vulpes) – hosts. Conclusions This study shows that the likelihood of MTC excretion by wild boar in Atlantic habitats is much lower than in Mediterranean areas. However, wild boar provide a good indicator of MTC circulation and, given the current re-emergence of animal TB, similar large-scale surveys would be advisable in other Atlantic regions of continental Europe. PMID:24010539

  5. Echolocation in wild toothed whales

    NASA Astrophysics Data System (ADS)

    Tyack, Peter L.; Johnson, Mark; Madsen, Peter Teglberg; Zimmer, Walter M. X.

    2001-05-01

    Don Griffin showed more than 50 years ago that bats echolocate for orientation and to capture prey. Experiments also demonstrated that captive dolphins can echolocate; more recent work parallels Griffin's work with bats in the wild. Digital acoustic recording tags were attached to sperm and beaked whales, Ziphius cavirostris and Mesoplodon densirostris, to record outgoing clicks and incoming echoes. The sperm whale data show echoes from the sea surface and seafloor, which are probably used for orientation and obstacle avoidance. When diving, sperm whales adjust their interclick interval as they change their pitch angle, consistent with the hypothesis that they are echolocating on a horizontal layer at the depth at which they will feed. This suggests that they may be listening for volume reverberation to select a prey patch. The beam pattern of sperm whales includes a narrow, forward-directed high-frequency beam probably used for prey detection, and a broader, backward-directed lower-frequency beam probably used for orientation. Beaked whales produce directional clicks with peak frequencies in the 25-40-kHz region. Echoes from individual prey items have been detected from clicks of beaked whales. This opens a new window into the study of how animals use echolocation to forage in the wild.

  6. Echolocation signals of wild dolphins

    NASA Astrophysics Data System (ADS)

    Au, W. W. L.

    2004-07-01

    Most of our understanding of dolphin echolocation has come from studies of captive dolphins performing various echolocation tasks. Recently, measurements of echolocation signals in the wild have expanded our understanding of the characteristics of these signals in a natural setting. Measuring undistorted dolphin echolocation signals with free swimming dolphins in the field can be a challenging task. A four hydrophone array arranged in a symmetrical star pattern was used to measure the echolocation signals of four species of dolphins in the wild. Echolocation signals of the following dolphins have been measured with the symmetrical star array: white-beaked dolphins in Iceland, Atlantic spotted dolphins in the Bahamas, killer whales in British Columbia, and dusky dolphins in New Zealand. There are many common features in the echolocation signals of the different species. Most of the signals had spectra that were bimodal: two peaks, one at low frequencies and another about an octave higher in frequency. The source level of the sonar transmission varies as a function of 20log R, suggesting a form of time-varying gain but on the transmitting end of the sonar process rather than the receiving end. The results of the field work call into question the issue of whether the signals used by captive dolphins may be shaped by the task they are required to perform rather than what they would do more naturally.

  7. Blood values in wild and captive Komodo dragons (Varanus komodoensis).

    PubMed

    Gillespie, Don; Frye, Frederic L.; Stockham, Steven L.; Fredeking, Terry

    2000-01-01

    The Komodo dragon (Varanus komodoensis) is the largest living lizard and occupies a range smaller than that of any other large carnivore in the world. Samples from 33 free-ranging animals at five localities in Komodo National Park, Indonesia were evaluated to assess underlying health problems. To build a comparative database, samples from 44 Komodo dragons in both Indonesian and U.S. zoos were also analyzed. Tests performed included complete blood counts, clinical chemistry profiles, vitamin A, D(3), and E analyses, mineral levels, and screening for chlorinated pesticides or other toxins in wild specimens. Blood samples from wild dragons were positive for hemogregarines, whereas captive specimens were all negative. Total white blood cell counts were consistently higher in captive Komodo dragons than in wild specimens. Reference intervals were established for some chemistry analytes, and values obtained from different groups were compared. Vitamin A and E ranges were established. Vitamin D(3) levels were significantly different in Komodo dragons kept in captive, indoor exhibits versus those with daily ultraviolet-B exposure, whether captive or wild specimens. Corrective measures such as ultraviolet-permeable skylights, direct sunlight exposure, and self-ballasted mercury vapor ultraviolet lamps increased vitamin D(3) concentrations in four dragons to levels comparable with wild specimens. Toxicology results were negative except for background-level chlorinated pesticide residues. The results indicate no notable medical, nutritional, or toxic problems in the wild Komodo dragon population. Problems in captive specimens may relate to, and can be corrected by, husbandry measures such as regular ultraviolet-B exposure. Zoo Biol 19:495-509, 2000. Copyright 2000 Wiley-Liss, Inc. PMID:11180411

  8. Population genetics of the wild yeast Saccharomyces paradoxus.

    PubMed Central

    Johnson, Louise J; Koufopanou, Vassiliki; Goddard, Matthew R; Hetherington, Richard; Schäfer, Stefanie M; Burt, Austin

    2004-01-01

    Saccharomyces paradoxus is the closest known relative of the well-known S. cerevisiae and an attractive model organism for population genetic and genomic studies. Here we characterize a set of 28 wild isolates from a 10-km(2) sampling area in southern England. All 28 isolates are homothallic (capable of mating-type switching) and wild type with respect to nutrient requirements. Nine wild isolates and two lab strains of S. paradoxus were surveyed for sequence variation at six loci totaling 7 kb, and all 28 wild isolates were then genotyped at seven polymorphic loci. These data were used to calculate nucleotide diversity and number of segregating sites in S. paradoxus and to investigate geographic differentiation, population structure, and linkage disequilibrium. Synonymous site diversity is approximately 0.3%. Extensive incompatibilities between gene genealogies indicate frequent recombination between unlinked loci, but there is no evidence of recombination within genes. Some localized clonal growth is apparent. The frequency of outcrossing relative to inbreeding is estimated at 1.1% on the basis of heterozygosity. Thus, all three modes of reproduction known in the lab (clonal replication, inbreeding, and outcrossing) have been important in molding genetic variation in this species. PMID:15020405

  9. Genome re-sequencing of semi-wild soybean reveals a complex Soja population structure and deep introgression.

    PubMed

    Qiu, Jie; Wang, Yu; Wu, Sanling; Wang, Ying-Ying; Ye, Chu-Yu; Bai, Xuefei; Li, Zefeng; Yan, Chenghai; Wang, Weidi; Wang, Ziqiang; Shu, Qingyao; Xie, Jiahua; Lee, Suk-Ha; Fan, Longjiang

    2014-01-01

    Semi-wild soybean is a unique type of soybean that retains both wild and domesticated characteristics, which provides an important intermediate type for understanding the evolution of the subgenus Soja population in the Glycine genus. In this study, a semi-wild soybean line (Maliaodou) and a wild line (Lanxi 1) collected from the lower Yangtze regions were deeply sequenced while nine other semi-wild lines were sequenced to a 3-fold genome coverage. Sequence analysis revealed that (1) no independent phylogenetic branch covering all 10 semi-wild lines was observed in the Soja phylogenetic tree; (2) besides two distinct subpopulations of wild and cultivated soybean in the Soja population structure, all semi-wild lines were mixed with some wild lines into a subpopulation rather than an independent one or an intermediate transition type of soybean domestication; (3) high heterozygous rates (0.19-0.49) were observed in several semi-wild lines; and (4) over 100 putative selective regions were identified by selective sweep analysis, including those related to the development of seed size. Our results suggested a hybridization origin for the semi-wild soybean, which makes a complex Soja population structure. PMID:25265539

  10. Sexual behaviour and mating patterns in a community of wild chimpanzees (Pan Troglodytes Schweinfurthii) 

    E-print Network

    Tutin, Caroline Elizabeth Gaskell

    1975-01-01

    The aim of the study was to describe the reproductive biology of wild chimpanzees (Pan troglodytes schweinfurthi) and to relate this to aspects of their ecology and social organisation. Within this general framework the ...

  11. Plant Disease Note 2006 | Wild Allium spp. as Natural Hosts of Iris yellow spot virus Overview Current Issue Past Issues Search PD Search APS Journals

    E-print Network

    Pappu, Hanu R.

    Plant Disease Note 2006 | Wild Allium spp. as Natural Hosts of Iris yellow spot virus Overview of the state may have resulted in natural infection of wild relatives of cultivated onion. The potential role of 2) [12/22/2006 9:16:00 AM] #12;Plant Disease Note 2006 | Wild Allium spp. as Natural Hosts of Iris

  12. Relationalism

    E-print Network

    Edward Anderson

    2014-07-15

    This article contributes to the debate of the meaning of relationalism and background independence, which has remained of interest in theoretical physics from Newton versus Leibniz through to foundational issues for today's leading candidate theories of quantum gravity. I contrast and compose the substantially different Leibniz--Mach--Barbour (LMB) and Rovelli--Crane (RC) uses of the word `relational'. Leibniz advocated primary timelessness and Mach that `time is to be abstracted from change'. I consider 3 distinct viewpoints on Machian time: Barbour's, Rovelli's and my own. I provide four expansions on Barbour's taking configuration space to be primary: to (perhaps a weakened notion of) phase space, categorizing, perspecting and propositioning. Categorizing means considering not only object spaces but also the corresponding morphisms and then functors between such pairs. Perspecting means considering the set of subsystem perspectives; this is an arena in which the LMB and Rovelli approaches make contact. By propositioning, I mean considering the set of propositions about a physical (sub)system. I argue against categorization being more than a formal pre-requisite for quantization in general; however, perspecting is a categorical operation, and propositioning leads one to considering topoi, with Isham and Doering's work represents one possibility for a mathematically sharp implementation of propositioning. Further applications of this article are arguing for Ashtekar variables as being relational in LMB as well as just the usually-ascribed RC sense, relationalism versus supersymmetry, string theory and M-theory. The question of whether scale is relational is also considered, with quantum cosmology in mind.

  13. Influenza infection in wild raccoons

    USGS Publications Warehouse

    Hall, J.S.; Bentler, K.T.; Landolt, G.; Elmore, S.A.; Minnis, R.B.; Campbell, T.A.; Barras, S.C.; Root, J.J.; Pilon, J.; Pabilonia, K.; Driscoll, C.; Slate, D.; Sullivan, H.; McLean, R.G.

    2008-01-01

    Raccoons (Procyon lotor) are common, widely distributed animals that frequently come into contact with wild waterfowl, agricultural operations, and humans. Serosurveys showed that raccoons are exposed to avian influenza virus. We found antibodies to a variety of influenza virus subtypes (H10N7, H4N6, H4N2, H3, and H1) with wide geographic variation in seroprevalence. Experimental infection studies showed that raccoons become infected with avian and human influenza A viruses, shed and transmit virus to virus-free animals, and seroconvert. Analyses of cellular receptors showed that raccoons have avian and human type receptors with a similar distribution as found in human respiratory tracts. The potential exists for co-infection of multiple subtypes of influenza virus with genetic reassortment and creation of novel strains of influenza virus. Experimental and field data indicate that raccoons may play an important role in influenza disease ecology and pose risks to agriculture and human health.

  14. Influenza Infection in Wild Raccoons

    PubMed Central

    Bentler, Kevin T.; Landolt, Gabrielle; Elmore, Stacey A.; Minnis, Richard B.; Campbell, Tyler A.; Barras, Scott C.; Root, J. Jeffrey; Pilon, John; Pabilonia, Kristy; Driscoll, Cindy; Slate, Dennis; Sullivan, Heather; McLean, Robert G.

    2008-01-01

    Raccoons (Procyon lotor) are common, widely distributed animals that frequently come into contact with wild waterfowl, agricultural operations, and humans. Serosurveys showed that raccoons are exposed to avian influenza virus. We found antibodies to a variety of influenza virus subtypes (H10N7, H4N6, H4N2, H3, and H1) with wide geographic variation in seroprevalence. Experimental infection studies showed that raccoons become infected with avian and human influenza A viruses, shed and transmit virus to virus-free animals, and seroconvert. Analyses of cellular receptors showed that raccoons have avian and human type receptors with a similar distribution as found in human respiratory tracts. The potential exists for co-infection of multiple subtypes of influenza virus with genetic reassortment and creation of novel strains of influenza virus. Experimental and field data indicate that raccoons may play an important role in influenza disease ecology and pose risks to agriculture and human health. PMID:19046505

  15. Influenza infection in wild raccoons.

    PubMed

    Hall, Jeffrey S; Bentler, Kevin T; Landolt, Gabrielle; Elmore, Stacey A; Minnis, Richard B; Campbell, Tyler A; Barras, Scott C; Root, J Jeffrey; Pilon, John; Pabilonia, Kristy; Driscoll, Cindy; Slate, Dennis; Sullivan, Heather; McLean, Robert G

    2008-12-01

    Raccoons (Procyon lotor) are common, widely distributed animals that frequently come into contact with wild waterfowl, agricultural operations, and humans. Serosurveys showed that raccoons are exposed to avian influenza virus. We found antibodies to a variety of influenza virus subtypes (H10N7, H4N6, H4N2, H3, and H1) with wide geographic variation in seroprevalence. Experimental infection studies showed that raccoons become infected with avian and human influenza A viruses, shed and transmit virus to virus-free animals, and seroconvert. Analyses of cellular receptors showed that raccoons have avian and human type receptors with a similar distribution as found in human respiratory tracts. The potential exists for co-infection of multiple subtypes of influenza virus with genetic reassortment and creation of novel strains of influenza virus. Experimental and field data indicate that raccoons may play an important role in influenza disease ecology and pose risks to agriculture and human health. PMID:19046505

  16. Relationalism

    E-print Network

    Anderson, Edward

    2012-01-01

    This article contributes to the debate of the meaning of relationalism and background independence, which has remained of interest in theoretical physics from Newton versus Leibniz through to foundational issues for today's leading candidate theories of quantum gravity. I contrast and compose the substantially different Leibniz--Mach--Barbour (LMB) and Rovelli--Crane (RC) uses of the word `relational'. Leibniz advocated primary timelessness and Mach that `time is to be abstracted from change'. I consider 3 distinct viewpoints on Machian time: Barbour's, Rovelli's and my own. I provide four expansions on Barbour's taking configuration space to be primary: to (perhaps a weakened notion of) phase space, categorizing, perspecting and propositioning. Categorizing means considering not only object spaces but also the corresponding morphisms and then functors between such pairs. Perspecting means considering the set of subsystem perspectives; this is an arena in which the LMB and Rovelli approaches make contact. By ...

  17. The Changing Face of Project WILD.

    ERIC Educational Resources Information Center

    Council for Environmental Education, Houston, TX. Project Wild National Office.

    This booklet highlights the success stories and lessons learned through Project WILD's participation in "WILD in the City" and Environmental Education and Training Partnership projects from 1995-97. Success stories include working with diverse audiences, building partnerships, working toward education reform, using innovative resources, and…

  18. WILD CHIMPANZEE FOUNDATION ANNUAL REPORT 2012

    E-print Network

    WILD CHIMPANZEE FOUNDATION ANNUAL REPORT 2012 Activities of the Wild Chimpanzee Foundation for improved conservation of chimpanzees and their habitat in West Africa Prepared by the WCF team Siège ........................................................................................................ 12 1.8. Celebrating 33 years of research and conservation of chimpanzees in the Taï National Park

  19. Gene R. Wilde Kevin L. Pope

    E-print Network

    Wilde, Gene

    Gene R. Wilde Kevin L. Pope Bart W. Durham Wilde is an associatae professor of fisheries ecology with the Wildlife and Fisheries Management Institute, Texas Tech University, Lubbock, TX. and can be reached at gene lures used by recre- ational anglers might be regulated to manipulate length of fish captured (Miranda

  20. The demography of wild carrot in Wisconsin

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Wild carrot was likely introduced to North America as a weed from Europe. It has spread since its introduction, now occurs in every state and has been declared invasive. Because wild carrot can easily hybridize with cultivated carrots, is an outcrosser and is pollinated by various insects, the intro...

  1. Eating from the wild: diversity of wild edible plants used by Tibetans in Shangri-la region, Yunnan, China

    PubMed Central

    2013-01-01

    Background Locally harvested wild edible plants (WEPs) provide food as well as cash income for indigenous people and are of great importance in ensuring global food security. Some also play a significant role in maintaining the productivity and stability of traditional agro-ecosystems. Shangri-la region of Yunnan Province, SW China, is regarded as a biodiversity hotspot. People living there have accumulated traditional knowledge about plants. However, with economic development, WEPs are threatened and the associated traditional knowledge is in danger of being lost. Therefore, ethnobotanical surveys were conducted throughout this area to investigate and document the wild edible plants traditionally used by local Tibetan people. Methods Twenty-nine villages were selected to carry out the field investigations. Information was collected using direct observation, semi-structured interviews, individual discussions, key informant interviews, focus group discussions, questionnaires and participatory rural appraisal (PRA). Results Information about 168 wild edible plant species in 116 genera of 62 families was recorded and specimens were collected. Most species were edible greens (80 species) or fruits (78). These WEPs are sources for local people, especially those living in remote rural areas, to obtain mineral elements and vitamins. More than half of the species (70%) have multiple use(s) besides food value. Some are crop wild relatives that could be used for crop improvement. Several also have potential values for further commercial exploitation. However, the utilization of WEPs and related knowledge are eroding rapidly, especially in the areas with convenient transportation and booming tourism. Conclusion Wild food plants species are abundant and diverse in Shangri-la region. They provide food and nutrients to local people and could also be a source of cash income. However, both WEPs and their associated indigenous knowledge are facing various threats. Thus, conservation and sustainable utilization of these plants in this area are of the utmost importance. Documentation of these species may provide basic information for conservation, possibly further exploitation, and will preserve local traditional knowledge. PMID:23597086

  2. Oscar Wilde and the brain cell.

    PubMed

    Cohn, Elisha

    2013-01-01

    This chapter considers Oscar Wilde's interest in the brain cell as an aesthetic object. Offering an account of Wilde's career that analyzes his early interest in physiology and philosophy, this chapter argues that Wilde's uniquely aesthetic take on the brain suggests that he rejects an account of the self as autonomous or self-determining. For many late Victorians brain science threatened both the freedom of human action and the legitimacy of beauty because it had the potential to invalidate conscious experience. But writers whose work Wilde knew, like John Ruskin, W. K. Clifford, and John Tyndall, avoided the despair of materialism by using aesthetic terms in their own discussions of life's invisible materials. Wilde's art collaborates with the contemporary sciences. His depictions of the cell direct the senses to a new field of being that emphasizes the molecular life all humans have in common, in which individual responsibility and activity matter less than the necessity of beauty. PMID:24290258

  3. Feline immunodeficiency virus (FIV) in wild Pallas' cats.

    PubMed

    Brown, Meredith A; Munkhtsog, Bariushaa; Troyer, Jennifer L; Ross, Steve; Sellers, Rani; Fine, Amanda E; Swanson, William F; Roelke, Melody E; O'Brien, Stephen J

    2010-03-15

    Feline immunodeficiency virus (FIV), a feline lentivirus related to HIV, causes immune dysfunction in domestic and wild cats. The Pallas' cat is the only species from Asia known to harbor a species-specific strain of FIV designated FIV(Oma) in natural populations. Here, a 25% seroprevalence of FIV is reported from 28 wild Mongolian Pallas' cats sampled from 2000 to 2008. Phylogenetic analysis of proviral RT-Pol from eight FIV(Oma) isolates from Mongolia, Russia, China and Kazakhstan reveals a unique monophyletic lineage of the virus within the Pallas' cat population, most closely related to the African cheetah and leopard FIV strains. Histopathological examination of lymph node and spleen from infected and uninfected Pallas' cats suggests that FIV(Oma) causes immune depletion in its' native host. PMID:19926144

  4. The Viruses of Wild Pigeon Droppings

    PubMed Central

    Phan, Tung Gia; Vo, Nguyen Phung; Boros, Ákos; Pankovics, Péter; Reuter, Gábor; Li, Olive T. W.; Wang, Chunling; Deng, Xutao; Poon, Leo L. M.; Delwart, Eric

    2013-01-01

    Birds are frequent sources of emerging human infectious diseases. Viral particles were enriched from the feces of 51 wild urban pigeons (Columba livia) from Hong Kong and Hungary, their nucleic acids randomly amplified and then sequenced. We identified sequences from known and novel species from the viral families Circoviridae, Parvoviridae, Picornaviridae, Reoviridae, Adenovirus, Astroviridae, and Caliciviridae (listed in decreasing number of reads), as well as plant and insect viruses likely originating from consumed food. The near full genome of a new species of a proposed parvovirus genus provisionally called Aviparvovirus contained an unusually long middle ORF showing weak similarity to an ORF of unknown function from a fowl adenovirus. Picornaviruses found in both Asia and Europe that are distantly related to the turkey megrivirus and contained a highly divergent 2A1 region were named mesiviruses. All eleven segments of a novel rotavirus subgroup related to a chicken rotavirus in group G were sequenced and phylogenetically analyzed. This study provides an initial assessment of the enteric virome in the droppings of pigeons, a feral urban species with frequent human contact. PMID:24023772

  5. 7 CFR 60.133 - Wild fish and shellfish.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ...2011-01-01 2011-01-01 false Wild fish and shellfish. 60.133 Section 60...CONTINUED) COUNTRY OF ORIGIN LABELING FOR FISH AND SHELLFISH General Provisions Definitions § 60.133 Wild fish and shellfish. Wild fish and...

  6. 7 CFR 60.133 - Wild fish and shellfish.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ...2013-01-01 2013-01-01 false Wild fish and shellfish. 60.133 Section 60...CONTINUED) COUNTRY OF ORIGIN LABELING FOR FISH AND SHELLFISH General Provisions Definitions § 60.133 Wild fish and shellfish. Wild fish and...

  7. 7 CFR 60.133 - Wild fish and shellfish.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ...2012-01-01 2012-01-01 false Wild fish and shellfish. 60.133 Section 60...CONTINUED) COUNTRY OF ORIGIN LABELING FOR FISH AND SHELLFISH General Provisions Definitions § 60.133 Wild fish and shellfish. Wild fish and...

  8. 7 CFR 60.133 - Wild fish and shellfish.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ...2014-01-01 2014-01-01 false Wild fish and shellfish. 60.133 Section 60...CONTINUED) COUNTRY OF ORIGIN LABELING FOR FISH AND SHELLFISH General Provisions Definitions § 60.133 Wild fish and shellfish. Wild fish and...

  9. Wild Steelhead Studies, 1993 Annual Report.

    SciTech Connect

    Holubetz, Terry B.

    1995-11-01

    Significant progress was attained in implementing the complex and challenging studies of wild steelhead Oncorhynchus mykiss production in Idaho. Study sites were selected and techniques were developed to collect the needed data in remote wilderness locations. Cursory examination of existing data provides indication that most wild steelhead stocks are under escaped, especially the Group B stocks. Abundance of wild steelhead is generally declining in recent years. The portable weir concept and electronic fish counting developed through this project have been well received by land owners and reviewing governmental agencies with less impact to the land, stream, and fishery resources than conventional permanent weirs.

  10. Functional flexibility in wild bonobo vocal behaviour

    PubMed Central

    Archbold, Jahmaira; Zuberbühler, Klaus

    2015-01-01

    A shared principle in the evolution of language and the development of speech is the emergence of functional flexibility, the capacity of vocal signals to express a range of emotional states independently of context and biological function. Functional flexibility has recently been demonstrated in the vocalisations of pre-linguistic human infants, which has been contrasted to the functionally fixed vocal behaviour of non-human primates. Here, we revisited the presumed chasm in functional flexibility between human and non-human primate vocal behaviour, with a study on our closest living primate relatives, the bonobo (Pan paniscus). We found that wild bonobos use a specific call type (the “peep”) across a range of contexts that cover the full valence range (positive-neutral-negative) in much of their daily activities, including feeding, travel, rest, aggression, alarm, nesting and grooming. Peeps were produced in functionally flexible ways in some contexts, but not others. Crucially, calls did not vary acoustically between neutral and positive contexts, suggesting that recipients take pragmatic information into account to make inferences about call meaning. In comparison, peeps during negative contexts were acoustically distinct. Our data suggest that the capacity for functional flexibility has evolutionary roots that predate the evolution of human speech. We interpret this evidence as an example of an evolutionary early transition away from fixed vocal signalling towards functional flexibility. PMID:26290789

  11. Developmental constraints in a wild primate.

    PubMed

    Lea, Amanda J; Altmann, Jeanne; Alberts, Susan C; Tung, Jenny

    2015-06-01

    Early-life experiences can dramatically affect adult traits. However, the evolutionary origins of such early-life effects are debated. The predictive adaptive response hypothesis argues that adverse early environments prompt adaptive phenotypic adjustments that prepare animals for similar challenges in adulthood. In contrast, the developmental constraints hypothesis argues that early adversity is generally costly. To differentiate between these hypotheses, we studied two sets of wild female baboons: those born during low-rainfall, low-quality years and those born during normal-rainfall, high-quality years. For each female, we measured fertility-related fitness components during years in adulthood that matched and mismatched her early conditions. We found support for the developmental constraints hypothesis: females born in low-quality environments showed greater decreases in fertility during drought years than females born in high-quality environments, even though drought years matched the early conditions of females born in low-quality environments. Additionally, we found that females born in low-quality years to high-status mothers did not experience reduced fertility during drought years. These results indicate that early ecological adversity did not prepare individuals to cope with ecological challenges in later life. Instead, individuals that experienced at least one high-quality early environment--either ecological or social--were more resilient to ecological stress in later life. Together, these data suggest that early adversity carries lifelong costs, which is consistent with the developmental constraints hypothesis. PMID:25996865

  12. Pancreatitis in wild zinc-poisoned waterfowl

    USGS Publications Warehouse

    Sileo, L.; Beyer, W.N.; Mateo, R.

    2003-01-01

    Four waterfowl were collected in the Tri-State Mining District (Oklahoma, Kansas and Missouri, USA), an area known to be contaminated with lead, cadmium and zinc (Zn). They were part of a larger group of 20 waterfowl collected to determine the exposure of birds to metal contamination at the site. The four waterfowl (three Branta canadensis, one Anas platyrhynchos) had mild to severe degenerative abnormalities of the exocrine pancreas, as well as tissue (pancreas, liver) concentrations of Zn that were considered toxic. The mildest condition was characterized by generalized atrophy of exocrine cells that exhibited cytoplasmic vacuoles and a relative lack of zymogen. The most severe condition was characterized by acini with distended lumens and hyperplastic exocrine tissue that completely lacked zymogen; these acini were widely separated by immature fibrous tissue. Because the lesions were nearly identical to the lesions reported in chickens and captive waterfowl that had been poisoned with ingested Zn, and because the concentrations of Zn in the pancreas and liver of the four birds were consistent with the concentrations measured in Zn-poisoned birds, we concluded that these waterfowl were poisoned by Zn. This may be the first reported case of zinc poisoning in free-ranging wild birds poisoned by environmental Zn.

  13. Pancreatitis in wild zinc-poisoned waterfowl

    USGS Publications Warehouse

    Sileo, L.; Beyer, W.N.; Mateo, R.

    2003-01-01

    Four waterfowl were collected in the TriState Mining District (Oklahoma, Kansas and Missouri, USA), an area known to be contaminated with lead, cadmium and zinc (Zn). They were part of a larger group of 20 waterfowl collected to determine the exposure of birds to metal contamination at the site. The four waterfowl (three Branta canadensis, one Anas platyrhynchos) had mild to severe degenerative abnormalities of the exocrine pancreas, as well as tissue (pancreas, liver) concentrations of Zn that were considered toxic. The mildest condition was characterized by generalized atrophy of exocrine cells that exhibited cytoplasmic vacuoles and a relative lack of zymogen. The most severe condition was characterized by acini with distended lumens and hyperplastic exocrine tissue that completely lacked zymogen; these acini were widely separated by immature fibrous tissue. Because the lesions were nearly identical to the lesions reported in chickens and captive waterfowl that had been poisoned with ingested Zn, and because the concentrations of Zn in the pancreas and liver of the four birds were consistent with the concentrations measured in Zn-poisoned birds, we concluded that these waterfowl were poisoned by Zn. This may be the first reported case of zinc poisoning in free-ranging wild birds poisoned by environmental Zn.

  14. Developmental Constraints in a Wild Primate

    PubMed Central

    Lea, Amanda J.; Altmann, Jeanne; Alberts, Susan C.; Tung, Jenny

    2015-01-01

    Early-life experiences can dramatically affect adult traits. However, the evolutionary origins of such early-life effects are debated. The predictive adaptive response hypothesis argues that adverse early environments prompt adaptive phenotypic adjustments that prepare animals for similar challenges in adulthood. In contrast, the developmental constraints hypothesis argues that early adversity is generally costly. To differentiate between these hypotheses, we studied two sets of wild female baboons: those born during low-rainfall, low-quality years and those born during normal-rainfall, high-quality years. For each female, we measured fertility-related fitness components during years in adulthood that matched and mismatched her early conditions. We found support for the developmental constraints hypothesis: females born in low-quality environments showed greater decreases in fertility during drought years than females born in high-quality environments, even though drought years matched the early conditions of females born in low-quality environments. Additionally, we found that females born in low-quality years to high-status mothers did not experience reduced fertility during drought years. These results indicate that early ecological adversity did not prepare individuals to cope with ecological challenges in later life. Instead, individuals that experienced at least one high-quality early environment—either ecological or social—were more resilient to ecological stress in later life. Together, these data suggest that early adversity carries lifelong costs, which is consistent with the developmental constraints hypothesis. PMID:25996865

  15. Hepatitis E Virus Genotype 3 in Wild Rats, United States

    PubMed Central

    Volk, Kylie; Van Den Bussche, Ronald A.

    2012-01-01

    The role of rodents in the epidemiology of zoonotic hepatitis E virus (HEV) infection has been a subject of considerable debate. Seroprevalence studies suggest widespread HEV infection in commensal Rattus spp. rats, but experimental transmission has been largely unsuccessful and recovery of zoonotic genotype 3 HEV RNA from wild Rattus spp. rats has never been confirmed. We surveyed R. rattus and R. norvegicus rats from across the United States and several international populations by using a hemi-nested reverse transcription PCR approach. We isolated HEV RNA in liver tissues from 35 of 446 rats examined. All but 1 of these isolates was relegated to the zoonotic HEV genotype 3, and the remaining sequence represented the recently discovered rat genotype from the United States and Germany. HEV-positive rats were detected in urban and remote localities. Genetic analyses suggest all HEV genotype 3 isolates obtained from wild Rattus spp. rats were closely related. PMID:22840202

  16. THE CHALLENGE OF RESTORING WILD SALMON

    EPA Science Inventory

    Many experts have concluded that wild salmon recovery efforts in western North America (especially California, Oregon, Washington, Idaho, and southern British Columbia), as earnest, expensive, and socially disruptive as they currently are, do not appear likely to sustain biologic...

  17. York's Wild Kingdom : a development proposal

    E-print Network

    Rae, Kimberley Whiting

    2008-01-01

    York's Wild Kingdom is a privately held zoo and amusement park in York, a Massachusetts based shopping center developer and investment compa Kingdom and the 150 acres that surround it. The community is culturaIl ( and York ...

  18. INTRODUCTION All wild tomato species (Solanum section

    E-print Network

    Spooner, David

    with other markers for phylogenetic inference in wild tomatoes [Solanum L. section Lycopersicon (Mill.) Wettst.] David M. Spooner1, Iris E. Peralta2 & Sandra Knapp3 1 Vegetable Crops Research Unit, USDA

  19. Vaccinating captive chimpanzees to save wild chimpanzees

    PubMed Central

    Warfield, Kelly L.; Goetzmann, Jason E.; Biggins, Julia E.; Kasda, Mary Beth; Unfer, Robert C.; Vu, Hong; Aman, M. Javad; Olinger, Gene Gerrard; Walsh, Peter D.

    2014-01-01

    Infectious disease has only recently been recognized as a major threat to the survival of Endangered chimpanzees and Critically Endangered gorillas in the wild. One potentially powerful tool, vaccination, has not been deployed in fighting this disease threat, in good part because of fears about vaccine safety. Here we report on what is, to our knowledge, the first trial in which captive chimpanzees were used to test a vaccine intended for use on wild apes rather than humans. We tested a virus-like particle vaccine against Ebola virus, a leading source of death in wild gorillas and chimpanzees. The vaccine was safe and immunogenic. Captive trials of other vaccines and of methods for vaccine delivery hold great potential as weapons in the fight against wild ape extinction. PMID:24912183

  20. Wild Plants Used by the Native Americans.

    ERIC Educational Resources Information Center

    Nature Study, 1984

    1984-01-01

    Describes 10 wild plants used by Native Americans. They include: rose hips; the common milkweed; cattails; elderberries; cactus fruits; lamb's quarters pigweeds (Chenopodium sp.); persimmons; mints (Monardo sp.); the yucca; and the hawthorn. Illustrations of each plant are included. (JN)

  1. The Mineralogy of Comet Wild 2

    NASA Technical Reports Server (NTRS)

    Zolensky, Michael

    2007-01-01

    The nature of cometary solids is of fundamental importance to our understanding of the early solar nebula and protoplanetary history. Samples of Comet Wild 2, provided by the Stardust Mission, have now been examined in terrestrial labs for two years, and are very surprising! Here we describe mainly the critical phases olivine, pyroxene and Fe-Ni sulfides in Wild 2 grains, as a guide to the general mineralogy of the returned comet samples.

  2. Ecology and Neurophysiology of Sleep in Two Wild Sloth Species

    PubMed Central

    Voirin, Bryson; Scriba, Madeleine F.; Martinez-Gonzalez, Dolores; Vyssotski, Alexei L.; Wikelski, Martin; Rattenborg, Niels C.

    2014-01-01

    Study Objectives: Interspecific variation in sleep measured in captivity correlates with various physiological and environmental factors, including estimates of predation risk in the wild. However, it remains unclear whether prior comparative studies have been confounded by the captive recording environment. Herein we examine the effect of predation pressure on sleep in sloths living in the wild. Design: Comparison of two closely related sloth species, one exposed to predation and one free from predation. Setting: Panamanian mainland rainforest (predators present) and island mangrove (predators absent). Participants: Mainland (Bradypus variegatus, five males and four females) and island (Bradypus pygmaeus, six males) sloths. Interventions: None. Measurements and Results: Electroencephalographic (EEG) and electromyographic (EMG) activity was recorded using a miniature data logger. Although both species spent between 9 and 10 h per day sleeping, the mainland sloths showed a preference for sleeping at night, whereas island sloths showed no preference for sleeping during the day or night. Standardized EEG activity during nonrapid eye movement (NREM) sleep showed lower low-frequency power, and increased spindle and higher frequency power in island sloths when compared to mainland sloths. Conclusions: In sloths sleeping in the wild, predation pressure influenced the timing of sleep, but not the amount of time spent asleep. The preference for sleeping at night in mainland sloths may be a strategy to avoid detection by nocturnal cats. The pronounced differences in the NREM sleep EEG spectrum remain unexplained, but might be related to genetic or environmental factors. Citation: Voirin B; Scriba MF; Martinez-Gonzalez D; Vyssotski AL; Wikelski M; Rattenborg NC. Ecology and neurophysiology of sleep in two wild sloth species. SLEEP 2014;37(4):753-761. PMID:24899764

  3. Gene flow among wild and domesticated almond species: insights from chloroplast and nuclear markers.

    PubMed

    Delplancke, Malou; Alvarez, Nadir; Espíndola, Anahí; Joly, Hélène; Benoit, Laure; Brouck, Elise; Arrigo, Nils

    2012-06-01

    Hybridization has played a central role in the evolutionary history of domesticated plants. Notably, several breeding programs relying on gene introgression from the wild compartment have been performed in fruit tree species within the genus Prunus but few studies investigated spontaneous gene flow among wild and domesticated Prunus species. Consequently, a comprehensive understanding of genetic relationships and levels of gene flow between domesticated and wild Prunus species is needed. Combining nuclear and chloroplastic microsatellites, we investigated the gene flow and hybridization among two key almond tree species, the cultivated Prunus dulcis and one of the most widespread wild relative Prunus orientalis in the Fertile Crescent. We detected high genetic diversity levels in both species along with substantial and symmetric gene flow between the domesticated P. dulcis and the wild P. orientalis. These results were discussed in light of the cultivated species diversity, by outlining the frequent spontaneous genetic contributions of wild species to the domesticated compartment. In addition, crop-to-wild gene flow suggests that ad hoc transgene containment strategies would be required if genetically modified cultivars were introduced in the northwestern Mediterranean. PMID:25568053

  4. Gene flow among wild and domesticated almond species: insights from chloroplast and nuclear markers

    PubMed Central

    Delplancke, Malou; Alvarez, Nadir; Espíndola, Anahí; Joly, Hélène; Benoit, Laure; Brouck, Elise; Arrigo, Nils

    2012-01-01

    Hybridization has played a central role in the evolutionary history of domesticated plants. Notably, several breeding programs relying on gene introgression from the wild compartment have been performed in fruit tree species within the genus Prunus but few studies investigated spontaneous gene flow among wild and domesticated Prunus species. Consequently, a comprehensive understanding of genetic relationships and levels of gene flow between domesticated and wild Prunus species is needed. Combining nuclear and chloroplastic microsatellites, we investigated the gene flow and hybridization among two key almond tree species, the cultivated Prunus dulcis and one of the most widespread wild relative Prunus orientalis in the Fertile Crescent. We detected high genetic diversity levels in both species along with substantial and symmetric gene flow between the domesticated P. dulcis and the wild P. orientalis. These results were discussed in light of the cultivated species diversity, by outlining the frequent spontaneous genetic contributions of wild species to the domesticated compartment. In addition, crop-to-wild gene flow suggests that ad hoc transgene containment strategies would be required if genetically modified cultivars were introduced in the northwestern Mediterranean. PMID:25568053

  5. SHORT COMMUNICATION Wild turkey (Meleagris gallopavo) detectability from helicopters

    E-print Network

    Wallace, Mark C.

    SHORT COMMUNICATION Wild turkey (Meleagris gallopavo) detectability from helicopters for wild turkey (Meleagris gallopavo) populations has been limited. We surveyed Rio Grande wild turkey (M and examine power to detect trends in population change. We observed that wild turkey flock detectability

  6. Wild carrot (Queen Anne's lace) Daucus carota L.

    E-print Network

    Wild carrot (Queen Anne's lace) Daucus carota L. Life cycle Erect, fernlike biennial. Leaves First-wide, flat-topped clusters. Fernlike leaf of wild carrot. Apiaceae (Carrot family) Back to identifying, flattened on one side and ridged with barbed spines. Reproduction Seeds. Wild carrot flower cluster. Wild

  7. 7 CFR 60.133 - Wild fish and shellfish.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 3 2012-01-01 2012-01-01 false Wild fish and shellfish. 60.133 Section 60.133... FOR FISH AND SHELLFISH General Provisions Definitions § 60.133 Wild fish and shellfish. Wild fish and shellfish means naturally-born or hatchery-originated fish or shellfish released in the wild, and...

  8. 7 CFR 60.133 - Wild fish and shellfish.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 3 2011-01-01 2011-01-01 false Wild fish and shellfish. 60.133 Section 60.133... FOR FISH AND SHELLFISH General Provisions Definitions § 60.133 Wild fish and shellfish. Wild fish and shellfish means naturally-born or hatchery-originated fish or shellfish released in the wild, and...

  9. 7 CFR 60.133 - Wild fish and shellfish.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 3 2014-01-01 2014-01-01 false Wild fish and shellfish. 60.133 Section 60.133... FOR FISH AND SHELLFISH General Provisions Definitions § 60.133 Wild fish and shellfish. Wild fish and shellfish means naturally-born or hatchery-originated fish or shellfish released in the wild, and...

  10. 7 CFR 60.133 - Wild fish and shellfish.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 3 2013-01-01 2013-01-01 false Wild fish and shellfish. 60.133 Section 60.133... FOR FISH AND SHELLFISH General Provisions Definitions § 60.133 Wild fish and shellfish. Wild fish and shellfish means naturally-born or hatchery-originated fish or shellfish released in the wild, and...

  11. Marked seasonal variation in the wild mouse gut microbiota

    PubMed Central

    Maurice, Corinne F; CL Knowles, Sarah; Ladau, Joshua; Pollard, Katherine S; Fenton, Andy; Pedersen, Amy B; Turnbaugh, Peter J

    2015-01-01

    Recent studies have provided an unprecedented view of the microbial communities colonizing captive mice; yet the host and environmental factors that shape the rodent gut microbiota in their natural habitat remain largely unexplored. Here, we present results from a 2-year 16?S ribosomal RNA gene sequencing-based survey of wild wood mice (Apodemus sylvaticus) in two nearby woodlands. Similar to other mammals, wild mice were colonized by 10 bacterial phyla and dominated by the Firmicutes, Bacteroidetes and Proteobacteria. Within the Firmicutes, the Lactobacillus genus was most abundant. Putative bacterial pathogens were widespread and often abundant members of the wild mouse gut microbiota. Among a suite of extrinsic (environmental) and intrinsic (host-related) factors examined, seasonal changes dominated in driving qualitative and quantitative differences in the gut microbiota. In both years examined, we observed a strong seasonal shift in gut microbial community structure, potentially due to the transition from an insect- to a seed-based diet. This involved decreased levels of Lactobacillus, and increased levels of Alistipes (Bacteroidetes phylum) and Helicobacter. We also detected more subtle but statistically significant associations between the gut microbiota and biogeography, sex, reproductive status and co-colonization with enteric nematodes. These results suggest that environmental factors have a major role in shaping temporal variations in microbial community structure within natural populations. PMID:26023870

  12. [Wild birds--a reservoir for influenza A virus].

    PubMed

    Griot, C; Hoop, R

    2007-11-01

    Influenza A viruses, in particular the H5 and H7 subtypes, have caused epizootic diseases in poultry for a long time. Wild aquatic birds and shorebirds form the natural virus reservoir. All influenza virus subtypes and almost all possible haemagglutinin/neuraminidase combinations have been detected in wild birds, whereas relatively few have been detected in humans and other mammals. In 1997, the emerging and spreading of the highly pathogenic strain H5N1 within Asia was supported by lack of hygiene in commercial poultry units and by the existence of live bird markets. During autumn 2005, migratory birds have been accused for spreading the infection along their flyways to Europe including Switzerland. For early detection of introduction to Europe, many countries have initiated surveillance programs for avian influenza in wild birds. Vaccines against influenza A viruses are existing for birds and are widely used to protect domestic fowl in endemic regions of Asia as well as valuable birds in zoos worldwide. Subtype H5N1 could be the progenitor virus of a new pandemic influenza virus. Therefore, the World Organisation for Animal Health (OIE, Paris) as well as the Food and Agriculture Organisation of the United Nations (FAO, Rome) will need to increase their efforts to assist countries to combat the disease in the field. PMID:18581906

  13. Brain cholinesterase activity of apparently normal wild birds

    USGS Publications Warehouse

    Hill, E.F.

    1988-01-01

    Organophosphorus and carbamate pesticides are potent anticholinesterase substances that have killed large numbers of wild birds of various species. Cause of death is diagnosed by demonstration of depressed brain cholinesterase (ChE) activity in combination with chemical detection of anticholinesterase residue in the affected specimen. ChE depression is determined by comparison of the affected specimen to normal ChE activity for a sample of control specimens of the same species, but timely procurement of controls is not always possible. Therefore, a reference file of normal whole brain ChE activity is provided for 48 species of wild birds from North America representing 11 orders and 23 families for use as emergency substitutes in diagnosis of anticholinesterase poisoning. The ChE values, based on 83 sets of wild control specimens from across the United States, are reproducible provided the described procedures are duplicated. Overall, whole brain ChE activity varied nearly three-fold among the 48 species represented, but it was usually similar for closely related species. However, some species were statistically separable in most families and some species of the same genus differed as much as 50%.

  14. Phylogenomic evidence for recombination of adenoviruses in wild gorillas.

    PubMed

    Hoppe, Eileen; Pauly, Maude; Robbins, Martha; Gray, Maryke; Kujirakwinja, Deo; Nishuli, Radar; Boji Mungu-Akonkwa, Dieu-Donné; Leendertz, Fabian H; Ehlers, Bernhard

    2015-10-01

    Human adenoviruses (HAdVs) of species Human mastadenovirus B (HAdV-B) are genetically highly diverse and comprise several pathogenic types. AdVs closely related to members of HAdV-B infect African great apes and the evolutionary origin of HAdV-B has recently been determined in ancient gorillas. Genetic evidence for intra- and inter-species recombination has been obtained for AdVs of humans and captive great apes, but evidence from wild great apes is lacking. In this study, potential HAdV-B members of wild Eastern gorillas were analysed for evidence of recombination. One near-complete genome was amplified from primary sample material and sequenced, and from another six individuals genome fragments were obtained. In phylogenomic analysis, their penton base, pVII-pVI, hexon and fiber genes were compared with those of all publicly available HAdV-B full-genome sequences of humans and captive great apes. Evidence for intra-species recombination between different HAdV-B members of wild gorillas as well as between HAdV-B members of chimpanzees and gorillas was obtained. Since zoonotic AdVs have been reported to cause respiratory outbreaks in both humans and monkeys, and humans in West and Central Africa frequently hunt and butcher primates thereby increasing the chance of zoonotic transmission, such HAdV-B recombinants might widen the pool of potential human pathogens. PMID:26219820

  15. Marked seasonal variation in the wild mouse gut microbiota.

    PubMed

    Maurice, Corinne F; Cl Knowles, Sarah; Ladau, Joshua; Pollard, Katherine S; Fenton, Andy; Pedersen, Amy B; Turnbaugh, Peter J

    2015-11-01

    Recent studies have provided an unprecedented view of the microbial communities colonizing captive mice; yet the host and environmental factors that shape the rodent gut microbiota in their natural habitat remain largely unexplored. Here, we present results from a 2-year 16?S ribosomal RNA gene sequencing-based survey of wild wood mice (Apodemus sylvaticus) in two nearby woodlands. Similar to other mammals, wild mice were colonized by 10 bacterial phyla and dominated by the Firmicutes, Bacteroidetes and Proteobacteria. Within the Firmicutes, the Lactobacillus genus was most abundant. Putative bacterial pathogens were widespread and often abundant members of the wild mouse gut microbiota. Among a suite of extrinsic (environmental) and intrinsic (host-related) factors examined, seasonal changes dominated in driving qualitative and quantitative differences in the gut microbiota. In both years examined, we observed a strong seasonal shift in gut microbial community structure, potentially due to the transition from an insect- to a seed-based diet. This involved decreased levels of Lactobacillus, and increased levels of Alistipes (Bacteroidetes phylum) and Helicobacter. We also detected more subtle but statistically significant associations between the gut microbiota and biogeography, sex, reproductive status and co-colonization with enteric nematodes. These results suggest that environmental factors have a major role in shaping temporal variations in microbial community structure within natural populations. PMID:26023870

  16. Genetic Analysis of East Asian Grape Cultivars Suggests Hybridization with Wild Vitis

    PubMed Central

    Goto-Yamamoto, Nami; Sawler, Jason; Myles, Sean

    2015-01-01

    Koshu is a grape cultivar native to Japan and is one of the country’s most important cultivars for wine making. Koshu and other oriental grape cultivars are widely believed to belong to the European domesticated grape species Vitis vinifera. To verify the domesticated origin of Koshu and four other cultivars widely grown in China and Japan, we genotyped 48 ancestry informative single nucleotide polymorphisms (SNPs) and estimated wild and domesticated ancestry proportions. Our principal components analysis (PCA) based ancestry estimation revealed that Koshu is 70% V. vinifera, and that the remaining 30% of its ancestry is most likely derived from wild East Asian Vitis species. Partial sequencing of chloroplast DNA suggests that Koshu’s maternal line is derived from the Chinese wild species V. davidii or a closely related species. Our results suggest that many traditional East Asian grape cultivars such as Koshu were generated from hybridization events with wild grape species. PMID:26488600

  17. Detecting mitochondrial signatures of selection in wild Tibetan pigs and domesticated pigs.

    PubMed

    Li, Mingzhou; Jin, Long; Ma, Jideng; Tian, Shilin; Li, Ruiqiang; Li, Xuewei

    2016-01-01

    Selection in genomic regions is prevalent in mammals; however, the effects of selection on the mitogenome are not clearly understood. We determined the complete mitochondrial DNA (mtDNA) sequences from six wild Tibetan pigs from the Tibetan plateau and four domestic pig breeds from the lowland of neighboring southwest China. Nucleotide diversity analysis using the sliding window method showed that the nucleotide diversity of wild Tibetan pigs in most regions of the mitogenome was higher than that of domestic pigs. The 12?s ribosomal RNA showed relatively lower nucleotide diversity in Tibetan pigs, suggesting purifying selection of these genes during high-altitude adaptation. More non-synonymous nucleotide substitutions in the ATP6 were found in wild Tibetan pigs, indicating adaptive selection in Tibetan pigs. The results suggested distinct impacts of natural selection and artificial selection upon the mitogenome, especially the mitochondrial signatures of adaptive evolution in wild Tibetan pigs under natural selection. PMID:24810064

  18. Genetic Analysis of East Asian Grape Cultivars Suggests Hybridization with Wild Vitis.

    PubMed

    Goto-Yamamoto, Nami; Sawler, Jason; Myles, Sean

    2015-01-01

    Koshu is a grape cultivar native to Japan and is one of the country's most important cultivars for wine making. Koshu and other oriental grape cultivars are widely believed to belong to the European domesticated grape species Vitis vinifera. To verify the domesticated origin of Koshu and four other cultivars widely grown in China and Japan, we genotyped 48 ancestry informative single nucleotide polymorphisms (SNPs) and estimated wild and domesticated ancestry proportions. Our principal components analysis (PCA) based ancestry estimation revealed that Koshu is 70% V. vinifera, and that the remaining 30% of its ancestry is most likely derived from wild East Asian Vitis species. Partial sequencing of chloroplast DNA suggests that Koshu's maternal line is derived from the Chinese wild species V. davidii or a closely related species. Our results suggest that many traditional East Asian grape cultivars such as Koshu were generated from hybridization events with wild grape species. PMID:26488600

  19. Nowzari et al. Habitat Associations of Persian Wild Ass in Iran HABITAT ASSOCIATIONS OF PERSIAN WILD

    E-print Network

    Rubenstein, Daniel I.

    25 Nowzari et al. · Habitat Associations of Persian Wild Ass in Iran HABITAT ASSOCIATIONS OF PERSIAN WILD ASS (EQUUS HEMIONUS ONAGER) IN QA- TROUYEH NATIONAL PARK, IRAN HANIYEH NOWZARI, Department of Environment, Abadeh Branch, Islamic Azad University, Abadeh, Iran. Address: No.475, 90 alley, Ghasrodasht Av

  20. Molecular identification of trypanosomatids in wild animals.

    PubMed

    Tenório, M S; Oliveira e Sousa, L; Alves-Martin, M F; Paixão, M S; Rodrigues, M V; Starke-Buzetti, W A; Araújo Junior, J P; Lucheis, S B

    2014-06-16

    Diverse wild animal species can be reservoirs of zoonotic flagellate parasites, which can cause pathologic Chagas disease. The present study aimed to detect the natural occurrence of flagellate parasites through direct microscopic examination of the parasites in blood samples and through PCR of whole blood and blood culture (haemoculture) samples from 38 captive and 65 free-living wild animals in the Centre for Conservation of Wild Fauna (CCWF), an area endemic for leishmaniasis. For this study, PCR was accomplished using primers for the ribosomal region (ITS-1) of the flagellate parasites. The amplified fragments were cloned and sequenced to identify DNA of the Trypanosomatid parasite species, observed in blood cultures from 3.9% (04/103) of the animals. Through these techniques, Trypanosoma cruzi was identified in haemoculture samples of the following three free-living species: common agouti (Dasyprocta aguti), white-eared opossum (Didelphis albiventris), and nine-banded armadillo (Dasypus novemcinctus). Furthermore, Trypanosoma minasense was identified in whole blood samples from 01 (0.9%) captive animal (black howler monkey-Alouatta caraya). These results demonstrated the first report of T. cruzi isolation in wild species from the CCWF using blood culture, which can be applied in addition to molecular tools for epidemiological studies and to identify trypanosomatids in wild animals. PMID:24636787

  1. Evolutionary ecology of the wild cereals

    SciTech Connect

    Blumler, M.A.

    1995-12-31

    The evolutionary ecology of the Near Eastern wild cereal grasses sheds light on the environmental conditions under which the Neolithic Revolution took place. Globally, as well as in the Near East, the annual habit, large seed size, and seasonal drought are associated with each other and with agricultural origins. The connection with agricultural appears to involve ease of cultivation and necessity for seasonal storage rather than hunter-gatherer preference for large seeds. The Near Eastern wild cereal species separate ecologically according to seasonality of precipitation, primarily, though there may also be minor differences in temperature and edaphic tolerances. This reflects the evolution, over the course of the Quaternary, of species with increased seed size in response to increasingly pronounced seasonal drought. Wild emmer and wild barley, the progenitors of perhaps the very first domesticates, are evolutionary monstrosities that represent the culmination of this trend. The possibly complex changes in seasonality, aridity, and atmospheric CO2 during the millenia leading up to the Neolithic should have produced equally complex, but to some extent predictable, changes in the abundance and distribution of the different wild cereal species.

  2. Function of loud calls in wild bonobos.

    PubMed

    White, Frances; Waller, Michel; Boose, Klaree; Merrill, Michelle; Wood, Kimberley

    2015-07-20

    Under the social origins hypothesis, human language is thought to have evolved within the framework of non-human primate social contexts and relationships. Our two closest relatives, chimpanzees and bonobos, however, have very different social relationships and this may be reflected in their use of loud calls. Much of loud calling in the male-bonded and aggressive chimpanzee functions for male alliance formation and intercommunity aggression. Bonobos, however, are female bonded and less aggressive and little is known on the use and function of their loud calls. Data on frequencies, context, and locations of vocalizations were collected for wild bonobos, Pan paniscus, at the Lomako Forest study site in the Democratic Republic of the Congo from 1983 to 2009. Both males and females participated in loud calls used for inter-party communication. Calling and response rates by both males and females were higher during party fusion than party fission and were common at evening nesting. The distribution of loud calls within the community range of loud calls was not random with males calling significantly more towards the periphery of the range and females calling significantly more in central areas. Calling and party fission were common at food patches. Responses were more frequent for female calls than for male calls. Calling, followed by fusion, was more frequent when a small party called from a large patch. We conclude that bonobo females and males loud calls can function in inter-party communication to call others to large food patches. Females call to attract potential allies and males call to attract potential mates. Our results support the social hypothesis of the origin of language because differences in the function and use of loud calls reflect the differing social systems of chimpanzees and bonobos. Bonobo loud calls are important for female communication and function in party coordination and, unlike chimpanzees, are less important in male cooperative aggression. PMID:25324464

  3. Stereotypic behavior in wild marine carnivores?

    PubMed

    Miller, L J; Kuczaj, S; Herzing, D

    2011-01-01

    Stereotypic behavior is observed in many species within zoological institutions. Attempts to reduce such behavior typically involve some form of environmental enrichment that provides opportunities for species appropriate behavior or some degree of control within the environment. However, environmental enrichment has never been completely successful in eliminating stereotypic behavior for an entire group of animals within a zoological facility. In the wild, stereotypic behavior is rarely observed. Documenting the occurrence of stereotypic behavior in the wild, and circumstances in which it occurs, could help provide insight into the causes of such behavior within zoological institutions. The following commentary details the observations of wild lemon sharks (Negaprion brevirostris) engaging in a stereotyped swimming pattern behind a research vessel north of Grand Bahama Island, Bahamas. We consider a possible explanation for the sharks' behavior and hope to stimulate conversation as well as increase examination of animal management routines in zoological facilities. PMID:20872877

  4. Avian influenza surveillance of wild birds

    USGS Publications Warehouse

    Slota, Paul

    2007-01-01

    The President's National Strategy for Pandemic Influenza directs federal agencies to expand the surveillance of United States domestic livestock and wildlife to ensure early warning of hightly pathogenic avian influenza (HPAI) in the U.S. The immediate concern is a potential introduction of HPAI H5N1 virus into the U.S. The presidential directive resulted in the U.S. Interagency Strategic Plan for Early Detection of H5N1 Highly Pathogenic Avian Influenza in Wild Migratory Birds (referred to as the Wild Bird Surveillance Plan or the Plan).

  5. How fast was wild wheat domesticated?

    PubMed

    Tanno, Ken-Ichi; Willcox, George

    2006-03-31

    Prehistoric cultivation of wild wheat in the Fertile Crescent led to the selection of mutants with indehiscent (nonshattering) ears, which evolved into modern domestic wheat. Previous estimates suggested that this transformation was rapid, but our analyses of archaeological plant remains demonstrate that indehiscent domesticates were slow to appear, emerging approximately 9500 years before the present, and that dehiscent (shattering) forms were still common in cultivated fields approximately 7500 years before the present. Slow domestication implies that after cultivation began, wild cereals may have remained unchanged for a long period, supporting claims that agriculture originated in the Near East approximately 10,500 years before the present. PMID:16574859

  6. Brachypodium distachyon: making hay with a wild grass.

    PubMed

    Opanowicz, Magdalena; Vain, Philippe; Draper, John; Parker, David; Doonan, John H

    2008-04-01

    Brachypodium distachyon is a wild grass with a short life cycle. Although it is related to small grain cereals such as wheat, its genome is only a fraction of the size. A draft genome sequence is currently available, and molecular and genetic tools have been developed for transformation, mutagenesis and gene mapping. Accessions collected from across its ancestral range show a surprising degree of phenotypic variation in many traits, including those implicated in domestication of the cereals. Thus, given its rapid cycling time and ease of cultivation, Brachypodium will be a useful model for investigating problems in grass biology. PMID:18343709

  7. Performance of hybrid progeny formed between genetically modified herbicide-tolerant soybean and its wild ancestor.

    PubMed

    Guan, Zheng-Jun; Zhang, Peng-Fei; Wei, Wei; Mi, Xiang-Cheng; Kang, Ding-Ming; Liu, Biao

    2015-01-01

    Gene flow from genetically modified (GM) crops to wild relatives might affect the evolutionary dynamics of weedy populations and result in the persistence of escaped genes. To examine the effects of this gene flow, the growth of F1 hybrids that were formed by pollinating wild soybean (Glycine soja) with glyphosate-tolerant GM soybean (G. max) or its non-GM counterpart was examined in a greenhouse. The wild soybean was collected from two geographical populations in China. The performance of the wild soybean and the F2 hybrids was further explored in a field trial. Performance was measured by several vegetative and reproductive growth parameters, including the vegetative growth period, pod number, seed number, above-ground biomass and 100-seed weight. The pod setting percentage was very low in the hybrid plants. Genetically modified hybrid F1 plants had a significantly longer period of vegetative growth, higher biomass and lower 100-seed weight than the non-GM ones. The 100-seed weight of both F1 and F2 hybrids was significantly higher than that of wild soybean in both the greenhouse and the field trial. No difference in plant growth was found between GM and non-GM F2 hybrids in the field trial. The herbicide-resistant gene appeared not to adversely affect the growth of introgressed wild soybeans, suggesting that the escaped transgene could persist in nature in the absence of herbicide use. PMID:26507568

  8. Performance of hybrid progeny formed between genetically modified herbicide-tolerant soybean and its wild ancestor

    PubMed Central

    Guan, Zheng-Jun; Zhang, Peng-Fei; Wei, Wei; Mi, Xiang-Cheng; Kang, Ding-Ming; Liu, Biao

    2015-01-01

    Gene flow from genetically modified (GM) crops to wild relatives might affect the evolutionary dynamics of weedy populations and result in the persistence of escaped genes. To examine the effects of this gene flow, the growth of F1 hybrids that were formed by pollinating wild soybean (Glycine soja) with glyphosate-tolerant GM soybean (G. max) or its non-GM counterpart was examined in a greenhouse. The wild soybean was collected from two geographical populations in China. The performance of the wild soybean and the F2 hybrids was further explored in a field trial. Performance was measured by several vegetative and reproductive growth parameters, including the vegetative growth period, pod number, seed number, above-ground biomass and 100-seed weight. The pod setting percentage was very low in the hybrid plants. Genetically modified hybrid F1 plants had a significantly longer period of vegetative growth, higher biomass and lower 100-seed weight than the non-GM ones. The 100-seed weight of both F1 and F2 hybrids was significantly higher than that of wild soybean in both the greenhouse and the field trial. No difference in plant growth was found between GM and non-GM F2 hybrids in the field trial. The herbicide-resistant gene appeared not to adversely affect the growth of introgressed wild soybeans, suggesting that the escaped transgene could persist in nature in the absence of herbicide use. PMID:26507568

  9. A global model of avian influenza prediction in wild birds: the importance of northern regions

    PubMed Central

    2013-01-01

    Avian influenza virus (AIV) is enzootic to wild birds, which are its natural reservoir. The virus exhibits a large degree of genetic diversity and most of the isolated strains are of low pathogenicity to poultry. Although AIV is nearly ubiquitous in wild bird populations, highly pathogenic H5N1 subtypes in poultry have been the focus of most modeling efforts. To better understand viral ecology of AIV, a predictive model should 1) include wild birds, 2) include all isolated subtypes, and 3) cover the host’s natural range, unbounded by artificial country borders. As of this writing, there are few large-scale predictive models of AIV in wild birds. We used the Random Forests algorithm, an ensemble data-mining machine-learning method, to develop a global-scale predictive map of AIV, identify important predictors, and describe the environmental niche of AIV in wild bird populations. The model has an accuracy of 0.79 and identified northern areas as having the highest relative predicted risk of outbreak. The primary niche was described as regions of low annual rainfall and low temperatures. This study is the first global-scale model of low-pathogenicity avian influenza in wild birds and underscores the importance of largely unstudied northern regions in the persistence of AIV. PMID:23763792

  10. Molecular Surveillance for Lymphoproliferative Disease Virus in Wild Turkeys (Meleagris gallopavo) from the Eastern United States

    PubMed Central

    Thomas, Jesse M.; Allison, Andrew B.; Holmes, Edward C.; Phillips, Jamie E.; Bunting, Elizabeth M.; Yabsley, Michael J.; Brown, Justin D.

    2015-01-01

    Lymphoproliferative disease virus (LPDV) is a poorly understood, oncogenic avian retrovirus of domestic turkeys that has historically been restricted to Europe and Israel. However, a recent study reported LPDV in multiple wild turkey diagnostic cases from throughout the eastern United States of America (USA). To better understand the distribution of LPDV in the eastern USA, we surveyed 1,164 reportedly asymptomatic hunter-harvested wild turkeys from 17 states for the presence of LPDV proviral DNA by PCR. In total, 564/1,164 (47%) turkeys were positive for LPDV. Wild turkeys from each state had a relatively high prevalence of LPDV, although statewide prevalence varied from 26 to 83%. Phylogenetic analysis revealed two major clades of LPDV in the USA, although one was at a low frequency suggesting restricted transmission, as well as significant clustering by state of isolation. To determine the best tissue to target for diagnostic purposes, liver, spleen, and bone marrow were tested from a subset of 15 hunter-harvested wild turkeys and 20 wild turkey diagnostic cases. Overall, bone marrow provided the highest level of detection for both hunter-harvested turkeys and diagnostic cases. The sensitivity of LPDV detection between tissues was not significantly different for diagnostic cases, but was for hunter-harvested birds. These results indicate that LPDV infection is common and widespread in wild turkey populations throughout the eastern USA, even without overt signs of disease. PMID:25897755

  11. Genetic diversity of wild Malus orientalis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Seeds from wild populations of Malus orientalis were collected in southern Russia and Turkey in 1998 and 1999. Seedling trees from these populations are now maintained in the USDA-National Plant Germplasm System Malus collection. Four hundred ninety-six individuals representing 85 half-sib familie...

  12. Fecal Bacterial Diversity in a Wild Gorilla†

    PubMed Central

    Frey, Julie C.; Rothman, Jessica M.; Pell, Alice N.; Nizeyi, John Bosco; Cranfield, Michael R.; Angert, Esther R.

    2006-01-01

    We describe the bacterial diversity in fecal samples of a wild gorilla by use of a 16S rRNA gene clone library and terminal-restriction fragment length polymorphism (T-RFLP). Clones were classified as Firmicutes, Verrucomicrobia, Actinobacteria, Lentisphaerae, Bacteroidetes, Spirochetes, and Planctomycetes. Our data suggest that fecal populations did not change temporally, as determined by T-RFLP. PMID:16672537

  13. Wild about Elk: An Educator's Guide.

    ERIC Educational Resources Information Center

    Duckworth, Carolyn; And Others

    The goal of Project WILD, a K-12 interdisciplinary conservation and environmental education program emphasizing wildlife, is to assist learners of any age in developing awareness, knowledge, skills, and commitment resulting in informed decisions, responsible behavior, and constructive actions concerning wildlife and the environment. This…

  14. Sunflower germplasm development utilizing wild Helianthus species

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The narrow genetic base of cultivated sunflower has been broadened by the infusion of genes from the wild species, which have provided a continued source of agronomic traits for crop improvement. The genus Helianthus comprises 51 species (14 annual and 37 perennial), all native to North America. The...

  15. "Wild Beasts" Roam the Art Room

    ERIC Educational Resources Information Center

    Thompson, Virginia P.

    2012-01-01

    Fauvism is a style of painting based on the use of intensely vivid colors that were not natural to the faces, landscapes and objects being painted. It was how artists expressed themselves during the first decade of the 20th century, and lasted only a short time. The artists were called "les Fauves," which means "the wild beasts." In this article,…

  16. Who Speaks for Wolf? Not Project WILD.

    ERIC Educational Resources Information Center

    Horwood, Bert

    Project WILD, a Canadian elementary school curriculum supplement about wildlife and the environment, is seriously flawed in that it presents a human-centered view of the world while purporting to be unbiased. This anthropocentric perspective, in which humans are alienated from the environment and in control of nature by technological means, is in…

  17. Project WILD--From Awareness to Action!

    ERIC Educational Resources Information Center

    Charles, Cheryl; Schafer, Rudy

    1984-01-01

    Discusses goals of Project WILD, an environmental and conservation program emphasizing wildlife. Includes instructions for using and sample of "dilemma cards" which allow students to read, discuss, make judgments, and write about hypothetical dilemmas concerning wildlife and/or natural resources. (BC)

  18. Paracoccidioides brasiliensis Infection in Small Wild Mammals.

    PubMed

    Sbeghen, Mônica Raquel; Zanata, Thais Bastos; Macagnan, Rafaela; de Abreu, Kaue Cachuba; da Cunha, Willian Luiz; Watanabe, Maria Angelica Ehara; de Camargo, Zoilo Pires; Ono, Mario Augusto

    2015-12-01

    Paracoccidioidomycosis (PCM) is a systemic mycosis prevalent in Brazil and other Latin American countries. The etiological agents of PCM are the thermo-dimorphic fungi Paracoccidioides brasiliensis and P. lutzii. Taking into account that the natural habitat of Paracoccidioides spp. is still undefined, domestic and wild animals could be useful as indicators of Paracoccidioides spp. presence in endemic areas. The objective of this study was to evaluate the infection of small wild mammals by P. brasiliensis in an endemic area for human PCM. Samples from 38 wild mammals from different species such as Akodon sp., Thaptomys nigrita, Euryoryzomys russatus, Oligoryzomys nigripes, Monodelphis sp., Sooretamys angouya, Abrawayaomys angouya, Abrawayaomys ruschii and Akodontinae sp. were evaluated by ELISA, immunodiffusion, histopathology, nested PCR and culture. The overall positivity to gp43 observed in the ELISA was 23.7 %. Samples from heart and liver of one O. nigripes were PCR positive, and the animal was also seropositive to gp43 in ELISA. This study showed that wild animals living in endemic areas for PCM are infected with P. brasiliensis and can be valuable epidemiological markers of the fungus presence in the environment. This is the first evidence of PCM infection in Akodon sp., E. russatus, T. nigrita and O. nigripes. PMID:26232125

  19. Does Comet WILD-2 contain Gems?

    NASA Technical Reports Server (NTRS)

    Chi, M.; Ishii, H.; Dai, Z. R.; Toppani, A.; Joswiak, D. J.; Leroux, H.; Zolensky, M.; Keller, L. P.; Browning, N. D.

    2007-01-01

    It is expected that Comet Wild-2 dust should resemble anhydrous carbon-rich, chondritic porous (CP) interplanetary dust particles (IDPs) collected in the stratosphere because some CP IDPs are suspected to be from comets. The rarity of carbonaceous grains and presolar silicates, as well as the presence of high-temperature inner solar nebula minerals in the Wild-2 sample (e.g. osbornite and melilite), appear incompatible with most CP IDPs. However, it is premature to draw firm conclusions about the mineralogy of comet Wild-2 because only approx. 1% of the sample has been examined. The most abundant silicates in CP IDPs are GEMS (glass with embedded metal and sulfides). Nonsolar O isotopic compositions confirm that at least some GEMS in IDPs are presolar amorphous silicates. The presence or absence of GEMS in the Wild-2 sample is important because it addresses, (a) the relationship between CP IDPs and comets, and (b) the hypothesis that other GEMS in IDPs formed in the solar nebula. Here we show that most of the GEMSlike materials so far identified in Stardust aerogel were likely impact generated during collection. At the nanometer scale, they are compositionally and crystallographically distinct from GEMS in IDPs.

  20. Unexpected Polyploidy in Wild Asian Strawberries

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The strawberry genus, Fragaria, has a haploid chromosome number of x = 7 and multiple ploidy levels in wild species, which include diploid (2x = 2n = 14), tetraploid (2x = 4n =28), pentaploid (2x = 5n = 35), hexaploid (2x = 6n = 42), and octoploid (2x = 8n = 56) plants. Artificial pentaploids, octop...

  1. IMMUNOTOXICOLOGY OF CAPTIVE AND WILD BIRDS

    EPA Science Inventory

    Environmental chemicals, including pesticides, have the potential to alter the immune response of laboratory or free-ranging animals. s a consequence, wild animals may become more susceptible to microbial or parasitic diseases; there is ample evidence that free-ranging wildlife f...

  2. Lattice Animals: Rigorous Results and Wild Guesses

    E-print Network

    Grimmett, Geoffrey

    Lattice Animals: Rigorous Results and Wild Guesses S.G. Whittington and C.E. Soteros 1 must di#er by unity in exactly one coordinate. A bond animal is a connected subgraph of the lattice and a site animal is a connected section graph of the lattice. The distinction is that for each pair

  3. Maple Sugar Harvesting/Wild Rice Harvesting.

    ERIC Educational Resources Information Center

    Minneapolis Public Schools, MN.

    Comprised of two separate booklets, this resource unit assists elementary teachers in explaining how the Ojibwe people harvest maple sugar and wild rice. The first booklet explains the procedure of tapping the maple trees for sap, preparation for boiling the sap, and the three forms the sugar is made into (granulated, "molded," and "taffy"). The…

  4. Germination Requirements Vary in Wild Rubus Species

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Seeds of blackberry and raspberry have a deep dormancy caused by one or more mechanisms. Rubus seeds are normally enclosed in a hard endocarp that is a major constraint for their germination. To better define the germination requirements of wild species we examined the effect of two scarification ...

  5. Lynne Cherry's "A River Ran Wild."

    ERIC Educational Resources Information Center

    Ledford, Carolyn; Brent, Rebecca

    1997-01-01

    Paraphrases the book "A River Ran Wild" by Lynne Cherry, contrasts how Native American and European settlers use a river, and discusses the pollution and cleanup of the river. Provides classroom discussion questions, and individual or group activities in language arts, art, role-playing, geography, and interviewing. Includes an annotated…

  6. Wild pollinators of eastern apple orchards

    E-print Network

    Danforth, Bryan Nicholas

    1 Wild pollinators of eastern apple orchards and how to conserve them #12;introdUction There is no doubt that insect pollination is a vital service for agricultural systems. Without insect pollinators, roughly a third of the world's crops would flower, only to fade and then lie barren. Pollinators ensure

  7. WILD DOLPHIN BEHAVIORS WHAT ARE NATURAL BEHAVIORS?

    E-print Network

    WILD DOLPHIN BEHAVIORS WHAT ARE NATURAL BEHAVIORS? Bottlenose dolphins exhibit a variety of natural behaviors, which are essential for survival and success in dolphin communities. e following behaviors are commonly seen in Florida waters. TRAVELING RESTING FORAGING AND FEEDING Bottlenose dolphins use a variety

  8. Saving Wild Species through Habitat Protection.

    ERIC Educational Resources Information Center

    Bohlen, Janet

    1980-01-01

    Describes the conservation approach adopted by World Wildlife Fund which focuses on habitat protection to save wild plant and animal species. Priority attention to tropical forests is explained. Examples are given of techniques (e.g., radiotelemetry and aerial survey) for studying ecological behavior patterns of specific animals. (CS)

  9. Parasite fauna of wild and cultured dusky-grouper Epinephelus marginatus (Lowe, 1834) from Ubatuba, southeastern Brazil.

    PubMed

    Roumbedakis, K; Marchiori, N C; Paseto, Á; Gonçalves, E L T; Luque, J L; Cepeda, P B; Sanches, E G; Martins, M L

    2013-11-01

    This study aimed at identifying and quantifying the parasites of wild and cultured dusky grouper Epinephelus marginatus. During a year and thereby all four seasons, 20 wild and 20 cultured groupers were examined for the presence of parasites, except in the last season, in which 19 wild and 20 cultured fish were examined, totalling 159 groupers analysed from Ubatuba, southeastern Brazil. Prevalence, mean intensity of infection, mean abundance and mean relative dominance were calculated. Five species of parasites were identified in fish from both origins: Pseudorhabdosynochus beverleyburtonae (Monogenea), Neobenedenia melleni (Monogenea), Pseudempleurosoma sp. (Monogenea), Helicometrina nimia (Digenea) and larvae of Contracaecum sp. (Nematoda). The prevalence of ectoparasites, in most cases, was higher than endoparasites. The most abundant parasite was the monogenea Pseudorhabdosynochus beverleyburtonae in both wild and cultured fish, along all seasons. Neobenedenia melleni was observed in wild and cultured fish in all seasons, with a gradual increase in the number of parasites from the coldest to the hottest seasons, with the highest prevalence and mean intensity in the summer. Helicometrina nimia was found in all seasons in both wild and cultured fish, except for summer, where its presence was detected only in wild fish. Pseudempleurosoma sp. and larvae of Contracaecum sp. showed low prevalence occurring in wild and cultured fish in the autumn and spring, respectively. This study revealed high intensities of potentially pathogenic parasites that could favour disease outbreaks in culture conditions. PMID:24789405

  10. Genetic relatedness of Brucella suis biovar 2 isolates from hares, wild boars and domestic pigs.

    PubMed

    Kreizinger, Zsuzsa; Foster, Jeffrey T; Rónai, Zsuzsanna; Sulyok, Kinga M; Wehmann, Enik?; Jánosi, Szilárd; Gyuranecz, Miklós

    2014-08-27

    Porcine brucellosis generally manifests as disorders in reproductive organs potentially leading to serious losses in the swine industry. Brucella suis biovar 2 is endemic in European wild boar (Sus scrofa) and hare (Lepus europeus, Lepus capensis) populations, thus these species may play a significant role in disease spread and serve as potential sources of infection for domestic pigs. The aim of this study was an epidemiologic analysis of porcine brucellosis in Hungary and a comparative analysis of B. suis bv. 2 strains from Europe using multiple-locus variable-number tandem repeat analysis (MLVA). MLVA-16 and its MLVA-11 subset were used to determine the genotypes of 68 B. suis bv. 2 isolates from Hungary and results were then compared to European MLVA genotypes. The analyses indicated relatively high genetic diversity of B. suis bv. 2 in Hungary. Strains isolated from hares and wild boars from Hungary showed substantial genetic divergence, suggesting separate lineages in each host and no instances of cross species infections. The closest relatives of strains from Hungarian wild boars and domestic pigs were mainly in the isolates from German and Croatian boars and pigs. The assessment of the European MLVA genotypes of wild boar isolates generally showed clustering based on geographic origin. The hare strains were relatively closely related to one another and did not cluster based on geographic origin. The limited relationships between geographic origin and genotype in isolates from hares might be the result of cross-border live animal translocation. The results could also suggest that certain B. suis strains are more adapted to hares. Across Europe, isolates from domestic pigs were closely related to isolates originating from both hares and wild boars, supporting the idea that wild animals are a source of brucellosis in domestic pigs. PMID:24962519

  11. Movements of wild pigs in Louisiana and Mississippi, 2011-13

    USGS Publications Warehouse

    Hartley, Stephen B.; Goatcher, Buddy L.; Sapkota, Sijan

    2015-01-01

    The prolific breeding capability, behavioral adaptation, and adverse environmental impacts of invasive wild pigs (Sus scrofa) have increased efforts towards managing their populations and understanding their movements. Currently, little is known about wild pig populations and movements in Louisiana and Mississippi. From 2011 to 2013, the U.S. Geological Survey investigated spatial and temporal movements of wild pigs in both marsh and nonmarsh physiographic regions. Twenty-one Global Positioning System satellite telemetry tracking collars were installed on adult wild pigs captured with trained dogs and released. Coordinates of their locations were recorded hourly. We collected 16,674 hourly data points including date, time, air temperature, and position during a 3-year study. Solar and lunar attributes, such as sun and moon phases and azimuth angles, were not related significantly to the movements among wild pigs. Movements were significantly correlated negatively with air temperature. Differences in movements between seasons and years were observed. On average, movements of boars were significantly greater than those of sows. Average home range, determined by using a minimum convex polygon as a proxy, was 911 hectares for boars, whereas average home range for sows was 116 hectares. Wild pigs in marsh habitat traveled lesser distances relative to those from more arid, nonmarsh habitats. Overall, results of this study indicate that wild pigs in Louisiana and Mississippi have small home ranges. These small home ranges suggest that natural movements have not been a major factor in the recent broad-scale range expansion observed in this species in the United States.

  12. The complete mitochondrial genome of Diqing wild boar (Sus verrucosus breed Diqing wild boar).

    PubMed

    Wang, Yan-Fang; Lei, Tao; Wang, Hai-Jun; Wang, Kang-Yu; Yang, Jing; Liu, Xiu-Ming; Yao, Na; Du, Lin-Na; Dong, Yuan-Yuan; Xu, Nuo; Ma, Ji-Sheng

    2016-03-01

    In the present study, the complete mitochondrial genome sequence of the diqing wild boar (Sus verrucosus breed diqing wild boar) was reported for the first time. The total length of the mitogenome was 16,506?bp. It contained the typical structure, including two ribosomal RNA genes, 13 protein-coding genes, 22 transfer RNA genes and one non-coding control region (D-loop region) as that of most other wild boars. The overall composition of the mitogenome was estimated to be 34.9% for A, 26.1% for T, 26.0% for C and 13.0% for G showing an A-T (61.0%)-rich feature. The mitochondrial genome analyzed here will provide new genetic resource to uncover wild boars' genetic diversity. PMID:24972145

  13. POLICY CONUNDRUM: RESTORING WILD SALMON TO THE PACIFIC NORTHWEST

    EPA Science Inventory

    Restoring wild salmon runs to the Pacific Northwest is technically challenging, politically nasty, and socially divisive. Past restoration efforts have been largely unsuccessful. Society's failure to reverse the continuing decline of wild salmon has the characteristics of a pol...

  14. RioGrande Wild Turkey Life History and Management Calendar 

    E-print Network

    Locke, Shawn; Cathey, James; Collier, Bret; Hardin, Jason

    2008-05-08

    This calendar is for landowners and managers who want to manage and improve their wild turkey habitat. The calendar is in easy-to-follow chart form and shows important annual events pertaining to wild turkey life history, habitat management...

  15. Stress and domestication traits increase the relative fitness of cropwild hybrids in sunflower

    E-print Network

    ­wild hybrid, domestication, G · E interactions, GM crops, herbicide, introgression, relative fitnessLETTER Stress and domestication traits increase the relative fitness of crop­wild hybrids a decade of transgenic crop production, the dynamics of gene introgression into wild relatives remain

  16. Hatching Time and Alevin Growth Prior to the Onset of Exogenous Feeding in Farmed, Wild and Hybrid Norwegian Atlantic Salmon

    PubMed Central

    Solberg, Monica Favnebøe; Fjelldal, Per Gunnar; Nilsen, Frank; Glover, Kevin Alan

    2014-01-01

    The onset of exogenous feeding, when juveniles emerge from the gravel, is a critical event for salmonids where early emergence and large size provide a competitive advantage in the wild. Studying 131 farmed, hybrid and wild Norwegian Atlantic salmon families, originating from four wild populations and two commercial strains, we investigated whether approximately 10 generations of selection for faster growth has also resulted in increased somatic growth prior to the onset of exogenous feeding. In addition, we tested whether relaxed selection in farms has allowed for alterations in hatching time between farmed and wild salmon. Across three cohorts, wild salmon families hatched earlier than farmed salmon families, while hybrid families displayed intermediate hatching times. While the observed differences were small, i.e., 1–15 degree-days (0–3 days, as water temperatures were c. 5–6°C), these data suggest additive genetic variation for hatching time. Alevin length prior to exogenous feeding was positively related to egg size. After removal of egg size effects, no systematic differences in alevin length were observed between the wild and farmed salmon families. While these results indicate additive genetic variation for egg development timing, and wild salmon families consistently hatched earlier than farmed salmon families, these differences were so small they are unlikely to significantly influence early life history competition of farmed and wild salmon in the natural environment. This is especially the case given that the timing of spawning among females can vary by several weeks in some rivers. The general lack of difference in size between farmed and wild alevins, strongly suggest that the documented differences in somatic growth rate between wild and farmed Norwegian Atlantic salmon under hatchery conditions are first detectable after the onset of exogenous feeding. PMID:25438050

  17. An Emergence Model for Wild Oat (Avena fatua)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Wild oat is an economically important annual weed throughout small grain producing regions of the United States and Canada. Timely and more accurate control of wild oat may be developed if there is a better understanding of wild oat emergence patterns. The objectives of this research were to evaluat...

  18. ORIGINAL PAPER Wild Turkey (Meleagris gallopavo) association to roads

    E-print Network

    Wallace, Mark C.

    ORIGINAL PAPER Wild Turkey (Meleagris gallopavo) association to roads: implications for distance roads. Our objective was to determine if and when Rio Grande wild turkeys (Meleagris gallopavo gallopavo intermedia . Rio Grande wild turkey. Roads . Texas Communicated by H. Kierdorf D. R. Erxleben :M

  19. Wild immunology AMY B. PEDERSEN and SIMON A. BABAYAN

    E-print Network

    Pedersen, Amy B.

    OPINION Wild immunology AMY B. PEDERSEN and SIMON A. BABAYAN Centre for Immunity, Infection and Evolution, Institutes of Immunology & Infection Research and Evolutionary Biology, University of Edinburgh for immunology to be taken into the wild. The goal of `wild immunology' is to link immune phenotype with host

  20. Math in a Zoo Math in the Wild Gary Flewelling

    E-print Network

    Spagnolo, Filippo

    199 Math in a Zoo Math in the Wild Gary Flewelling Independent Consultant flew. However, knowledge is acquired and used very differently in the two games and the purpose, nature, quality into the wild. In the table below, I set out a brief comparison of zoos and the wild under the headings

  1. Word Spotting in the Wild Kai Wang and Serge Belongie

    E-print Network

    Zwicker, Matthias

    ). In between these two extremes sits text found in the wild. Due to its unconstrained nature, in some casesWord Spotting in the Wild Kai Wang and Serge Belongie Department of Computer Science for spotting words in the wild, i.e., in real images taken in unconstrained environments. Text found

  2. Malemale competition magnifies inbreeding depression in wild house mice

    E-print Network

    Potts, Wayne

    vertebrate living in the wild or even under stressful conditions designed to mimic nature. The onlyMale­male competition magnifies inbreeding depression in wild house mice Shawn Meagher* , Dustin J fitness) are uncertain for vertebrates in the wild. Here, we report direct experimental evi- dence

  3. EPIDEMIOLOGY OF SCLEROTINIA HEAD ROT IN WILD SUNFLOWER SPECIES

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Work was conducted in 2002 to understand the epidemiology of the Sclerotinia infections to wild sunflower heads and stems and to establish methodology for assessing germplasm accessions of wild sunflower species under field conditions. Ninety-two accessions of wild sunflower species were evaluated. ...

  4. Wild Food Summit: Anishinaabe Relearning Traditional Gathering Practices

    ERIC Educational Resources Information Center

    Sorensen, Barbara Ellen

    2011-01-01

    Wild Food Summits is a program initiated by Steve Dahlberg, the White Earth Tribal & Community College Extension director. Dahlberg began Wild Food Summits to teach people about identifying and gathering wild greens, mushrooms, and other edible plant life. The whole community comes together to cook and eat the foods. The tribal college has…

  5. Project WILD K-12 Curriculum and Activity Guide

    ERIC Educational Resources Information Center

    Council for Environmental Education, 2011

    2011-01-01

    The "Project WILD K-12 Curriculum and Activity Guide" focuses on wildlife and habitat. It is organized in topic units and is based on the Project WILD conceptual framework. Because these activities are designed for integration into existing courses of study, instructors may use one or many Project WILD activities or the entire set of activities…

  6. 27 CFR 9.124 - Wild Horse Valley.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ...2010-04-01 2010-04-01 false Wild Horse Valley. 9.124 Section 9.124 ...American Viticultural Areas § 9.124 Wild Horse Valley. (a) Name. The name of the...area described in this section is “Wild Horse Valley.” (b) Approved Map....

  7. 27 CFR 9.124 - Wild Horse Valley.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ...2013-04-01 2013-04-01 false Wild Horse Valley. 9.124 Section 9.124 ...American Viticultural Areas § 9.124 Wild Horse Valley. (a) Name. The name of the...area described in this section is “Wild Horse Valley.” (b) Approved Map....

  8. 27 CFR 9.124 - Wild Horse Valley.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ...2012-04-01 2012-04-01 false Wild Horse Valley. 9.124 Section 9.124 ...American Viticultural Areas § 9.124 Wild Horse Valley. (a) Name. The name of the...area described in this section is “Wild Horse Valley.” (b) Approved Map....

  9. 27 CFR 9.124 - Wild Horse Valley.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ...2011-04-01 2011-04-01 false Wild Horse Valley. 9.124 Section 9.124 ...American Viticultural Areas § 9.124 Wild Horse Valley. (a) Name. The name of the...area described in this section is “Wild Horse Valley.” (b) Approved Map....

  10. 75 FR 26990 - Wild Horse and Burro Advisory Board; Meeting

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-05-13

    ...Management [LLWO2600000 L10600000 XQ0000] Wild Horse and Burro Advisory Board; Meeting AGENCY...Management (BLM) announces that the Wild Horse and Burro Advisory Board (Board) will...meeting on the BLM's management of wild horses and burros. This will be a two day...

  11. 78 FR 46599 - Wild Horse and Burro Advisory Board Meeting

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-08-01

    ...Management [LLWO2600000 L10600000 XQ0000] Wild Horse and Burro Advisory Board Meeting AGENCY...Management (BLM) announces that the Wild Horse and Burro Advisory Board will conduct a...meeting can be mailed to National Wild Horse and Burro Program, WO-260,...

  12. 76 FR 55107 - Wild Horse and Burro Advisory Board; Meeting

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-09-06

    ...Management [LLWO2600000 L10600000 XQ0000] Wild Horse and Burro Advisory Board; Meeting AGENCY...Management (BLM) announces that the Wild Horse and Burro Advisory Board will conduct a...and protection of wild, free-roaming horses and burros on the Nation's public...

  13. 76 FR 7231 - Wild Horse and Burro Advisory Board; Meeting

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-02-09

    ...Management [LLWO2600000 L10600000 XQ0000] Wild Horse and Burro Advisory Board; Meeting AGENCY...Management (BLM) announces that the Wild Horse and Burro Advisory Board will conduct a...and protection of wild, free-roaming horses and burros on the Nation's public...

  14. 27 CFR 9.124 - Wild Horse Valley.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ...2014-04-01 2014-04-01 false Wild Horse Valley. 9.124 Section 9.124 ...American Viticultural Areas § 9.124 Wild Horse Valley. (a) Name. The name of the...area described in this section is “Wild Horse Valley.” (b) Approved Map....

  15. Maternal Effects on Anogenital Distance in a Wild Marmot Population

    E-print Network

    Blumstein, Daniel T.

    Maternal Effects on Anogenital Distance in a Wild Marmot Population Timothe´e D. Fouqueray1 on a long-term study of wild yellow-bellied marmots (Marmota flaviventris) to study the importance, Blumstein DT, Monclu´s R, Martin JGA (2014) Maternal Effects on Anogenital Distance in a Wild Marmot

  16. Project WILD Aquatic K-12 Curriculum and Activity Guide

    ERIC Educational Resources Information Center

    Council for Environmental Education, 2011

    2011-01-01

    The "Project WILD Aquatic K-12 Curriculum and Activity Guide" emphasizes aquatic wildlife and aquatic ecosystems. It is organized in topic units and is based on the Project WILD conceptual framework. Because these activities are designed for integration into existing courses of study, instructors may use one or many Project WILD Aquatic activities…

  17. Characteristics of wild turkey hunters in Texas: comparing turkey stamp buyers to members of the National Wild Turkey Federation 

    E-print Network

    Harmel-Garza, Karen D

    2001-01-01

    This thesis examined wild turkey (Meleagris gallopavo) hunters in Texas. It also examined the differences between people who are members of the Texas Chapter of the National Wild Turkey Federation, and people who are not members, but bought turkey...

  18. LAYNE, HOSPEDALES, GONG: RE-ID: HUNTING ATTRIBUTES IN THE WILD 1 Re-id: Hunting Attributes in the Wild

    E-print Network

    Gong, Shaogang

    LAYNE, HOSPEDALES, GONG: RE-ID: HUNTING ATTRIBUTES IN THE WILD 1 Re-id: Hunting Attributes, HOSPEDALES, GONG: RE-ID: HUNTING ATTRIBUTES IN THE WILD Much re-identification research breaks down into two

  19. Wild turkey poult survival in southcentral Iowa

    USGS Publications Warehouse

    Hubbard, M.W.; Garner, D.L.; Klaas, E.E.

    1999-01-01

    Poult survival is key to understanding annual change in wild turkey (Meleagris gallopavo) populations. Survival of eastern wild turkey poults (M. g. silvestris) 0-4 weeks posthatch was studied in southcentral Iowa during 1994-97. Survival estimates of poults were calculated based on biweekly flush counts and daily locations acquired via radiotelemetry. Poult survival averaged 0.52 ?? 0.14% (?? ?? SE) for telemetry counts and 0.40 ?? 0.15 for flush counts. No within-year or across-year differences were detected between estimation techniques. More than 72% (n = 32) of documented poult mortality occurred ???14 days posthatch, and mammalian predation accounted for 92.9% of documented mortality. If mortality agents are not of concern, we suggest biologists conduct 4-week flush counts to obtain poult survival estimates for use in population models and development of harvest recommendations.

  20. Locomotion dynamics of hunting in wild cheetahs.

    PubMed

    Wilson, A M; Lowe, J C; Roskilly, K; Hudson, P E; Golabek, K A; McNutt, J W

    2013-06-13

    Although the cheetah is recognised as the fastest land animal, little is known about other aspects of its notable athleticism, particularly when hunting in the wild. Here we describe and use a new tracking collar of our own design, containing a combination of Global Positioning System (GPS) and inertial measurement units, to capture the locomotor dynamics and outcome of 367 predominantly hunting runs of five wild cheetahs in Botswana. A remarkable top speed of 25.9?m?s(-1) (58?m.p.h. or 93?km?h(-1)) was recorded, but most cheetah hunts involved only moderate speeds. We recorded some of the highest measured values for lateral and forward acceleration, deceleration and body-mass-specific power for any terrestrial mammal. To our knowledge, this is the first detailed locomotor information on the hunting dynamics of a large cursorial predator in its natural habitat. PMID:23765495

  1. Habitat Suitability Index Models: Eastern Wild Turkey

    USGS Publications Warehouse

    Schroeder, Richard L.

    1985-01-01

    A review and synthesis of existing information were used to develop a Habitat Suitability Index (HSI) model for the eastern wild turkey (Meleagris gallopavo sylvestris). The model consolidates habitat use information into a framework appropriate for field application, and is scaled to produce an index between 0.0 (unsuitable habitat) to 1.0 (optimum habitat). HSI models are designed to be used with Habitat Evaluation Procedures previously developed by the U.S. Fish and Wildlife Service.

  2. Lead, cadmium and organochlorine pesticide residues in hunted red deer and wild boar from northern Italy.

    PubMed

    Chiari, Mario; Cortinovis, Cristina; Bertoletti, Marco; Alborali, Loris; Zanoni, Mariagrazia; Ferretti, Enrica; Caloni, Francesca

    2015-11-01

    The objectives of the present study were to assess heavy metal cadmium (Cd), lead (Pb) and organochlorine pesticide concentrations in tissues of red deer (Cervus elaphus) and wild boar (Sus scrofa) from nine hunting areas and to evaluate related risk factors for the host animal. Over a period of 2 years, a total of 1055 and 210 masseters, 424 and 201 livers, 642 and 152 kidneys were collected from wild boar and red deer, respectively, and concentrations of Cd, Pb and organochlorine pesticides were determined. Comparing the two species, Cd concentration in the kidney (3.72 mg/kg), liver (0.67 mg/kg) and muscle (0.02 mg/kg) of wild boar was found to be significantly higher than in the organs of red deer (1.02 mg/kg in the kidneys, 0.07 mg/kg in the liver and 0.006 mg/kg in muscle). Mean Pb concentrations were found to be similar in both animals, with 0.39, 0.52 and 2.60 mg/kg detected in the wild boar kidney, liver and muscle, respectively, and 0.24, 0.21 and 2.04 mg/kg in the respective organs of the red deer. No difference in concentrations were found based on age class, location of tissue sample or contaminant in the case of wild boar. By contrast, a significantly lower Cd concentration was found in the kidney of the young red deer. The search for organochlorine pesticides in both red deer and wild boar produced negative results with values below the limits of detection. Due to the high levels of renal Cd and muscle Pb detected in wild boar and red deer, further research needs to be carried out in an effort to identify the source of contamination and preserve the health of animals and humans. PMID:26365428

  3. CHARACTERIZATION OF WILD PIG VEHICLE COLLISIONS

    SciTech Connect

    Mayer, J; Paul E. Johns, P

    2007-05-23

    Wild pig (Sus scrofa) collisions with vehicles are known to occur in the United States, but only minimal information describing these accidents has been reported. In an effort to better characterize these accidents, data were collected from 179 wild pig-vehicle collisions from a location in west central South Carolina. Data included accident parameters pertaining to the animals involved, time, location, and human impacts. The age structure of the animals involved was significantly older than that found in the population. Most collisions involved single animals; however, up to seven animals were involved in individual accidents. As the number of animals per collision increased, the age and body mass of the individuals involved decreased. The percentage of males was significantly higher in the single-animal accidents. Annual attrition due to vehicle collisions averaged 0.8 percent of the population. Wild pig-vehicle collisions occurred year-round and throughout the 24-hour daily time period. Most accidents were at night. The presence of lateral barriers was significantly more frequent at the collision locations. Human injuries were infrequent but potentially serious. The mean vehicle damage estimate was $1,173.

  4. Demineralization enables reeling of wild silkmoth cocoons.

    PubMed

    Gheysens, Tom; Collins, Andrew; Raina, Suresh; Vollrath, Fritz; Knight, David P

    2011-06-13

    Wild Silkmoth cocoons are difficult or impossible to reel under conditions that work well for cocoons of the Mulberry silkmoth, Bombyx mori . Here we report evidence that this is caused by mineral reinforcement of Wild Silkmoth cocoons and that washing these minerals out allows for the reeling of commercial lengths of good quality fibers with implications for the development of the "Wild Silk" industry. We show that in the Lasiocampid silkmoth Gonometa postica , the mineral is whewellite (calcium oxalate monohydrate). Evidence is presented that its selective removal by ethylenediaminetetraacetic acid (EDTA) leaves the gum substantially intact, preventing collapse and entanglement of the network of fibroin brins, enabling wet reeling. Therefore, this method clearly differs from the standard "degumming" and should be referred to as "demineralizing". Mechanical testing shows that such preparation results in reeled silks with markedly improved breaking load and extension to break by avoiding the damage produced by the rather harsh degumming, carding, or dry reeling methods currently in use, what may be important for the development of the silk industries not only in Asia but also in Africa and South America. PMID:21491856

  5. Observations and Modelling of 81P/Wild 2

    NASA Astrophysics Data System (ADS)

    Meech, K. J.; Newburn, R. L.

    1998-09-01

    81P/Wild 2 is the target for study by the STARDUST space mission which launches 2/99 and will return a sample of comet dust to Earth. 81P/Wild 2 was selected because of its newness as a Jupiter family comet and because of the discovery of a trajectory offering the low encounter velocity of only 6.1 km s(-1) . Observations over a wide range of heliocentric distances since 1987 have enabled us to greatly enhance knowledge of 81P/Wild 2, as required to mount a successful space mission. Observations that indicate residual cometary activity out to a heliocentric distance of r = 4.7 AU show that the brightness is fairly symmetric about perihelion with a peak near perihelion. Twelve sets of observations beyond that distance indicate that the nucleus of 81P/Wild 2 is fairly spherical with a radius of 2.87 km (for p_R = 0.02). No significant brightness variations attributable to rotation were seen during a 1 hour time-span on 1989 Aug 2, implying either a very spherical nucleus or relatively long period. Additional observations are scheduled for 1998 September to attempt to determine the rotation period (r = 4.01 AU) and we will report on this data. The color of the dust in the coma remained fairly constant at R-I=0.45 during 4 runs from r = 1.69-3.99 AU. The data at r = 1.58 AU showed a significantly bluer coma. Models for a flyby at 150 km closest approach to the nucleus, with an active surface area of 20% indicate that a spacecraft of 1 m(2) cross section should be hit by one particle a bit larger than a mm in radius, and there are only about three chances in a 1000 of being hit by a particle 1 cm in radius or larger. This assumes the particle size distribution as measured for 1P/Halley (McDonnell et al. (1991), in Comets in the Post-Halley Era).

  6. Porphyrin Interactions with Wild Type and Mutant Mouse Ferrochelatase

    SciTech Connect

    Ferreira, Gloria C.; Franco, Ricardo; Lu, Yi; Ma, Jian-Guo; Shelnutt, John A.

    1999-05-19

    Ferrochelatase (EC 4.99.1.1), the terminal enzyme of the heme biosynthetic pathway, catalyzes Fe2+ chelation into protoporphyrin IX. Resonance Raman and W-visible absorbance spectroscopes of wild type and engineered variants of murine ferrochelatase were used to examine the proposed structural mechanism for iron insertion into protoporphyrin by ferrochelatase. The recombinant variants (i.e., H207N and E287Q) are enzymes in which the conserved amino acids histidine-207 and glutamate-287 of murine ferrochelatase were substituted with asparagine and glutamine, respectively. Both of these residues are at the active site of the enzyme as deduced from the Bacillus subtilis ferrochelatase three-dimensional structure. Addition of free base or metalated porphyrins to wild type ferrochelatase and H207N variant yields a quasi 1:1 complex, possibly a monomeric protein-bound species. In contrast, the addition of porphyrin (either free base or metalated) to E287Q is sub-stoichiometric, as this variant retains bound porphyrin in the active site during isolation and purification. The specificity of porphyrin binding is confirmed by the narrowing of the structure-sensitive resonance Raman lines and the vinyl vibrational mode. Resonance Raman spectra of free base and metalated porphyrins bound to the wild type ferrochelatase indicate a nonplanar distortion of the porphyrin macrocycle, although the magnitude of the distortion cannot be determined without first defining the specific type of deformation. Significantly, the extent of the nonplanar distortion varies in the case of H207N- and E287Q-bound porphyrins. In fact, resonance Raman spectral decomposition indicates a homogeneous ruffled distortion for the nickel protoporphyrin bound to the wild type ferrochelatase, whereas both a planar and ruffled conformations are present for the H207N-bound porphyrin. Perhaps more revealing is the unusual resonance , 3 Raman spectrum of the endogenous E287Q-bound porphyrin, which has the structure-sensitive lines greatly upshifted relative to those of the free base protoporphyrin in solution. This could be interpreted as an equilibrium between protein conformers, one of which favors a highly distorted porphyrin macrocycle. Taken together these findings suggest that the mode of porphyrin distortion in murine ferrochelatase is different from that reported for yeast ferrochelatase, which requires metal binding for porphyrin distortion.

  7. Wild New Hampshire Blueberries Wild (lowbush) blueberries have always called New Hampshire home. These small, flavor and

    E-print Network

    New Hampshire, University of

    Wild New Hampshire Blueberries Wild (lowbush) blueberries have always called New Hampshire home. Wild blueberries spread by seed and through the growth of underground stems called rhizomes. Over many blueberries that dominate the New Hampshire landscape: Vaccinium angustifolium, "low sweet," is our dominant

  8. Oxygen isotopes in crystalline silicates of comet Wild 2: A comparison of oxygen isotope systematics between Wild 2 particles

    E-print Network

    Meyers, Stephen R.

    Oxygen isotopes in crystalline silicates of comet Wild 2: A comparison of oxygen isotope 2012 Keywords: oxygen isotope ratios crystalline silicate comet 81P/Wild 2 solar system formation Stardust Abstract: Oxygen three-isotope ratios of nine crystalline silicate particles from comet Wild 2

  9. A Novel Biodiversity of Wild Sunflowers (Helianthus annuus) Naturally Developed in Central Argentina

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The sunflower's wild relative, Helianthus annuus L., is a non-native invader in several regions of the world. It was introduced as experimental forage in central Argentina six decades ago where it probably escaped and developed extended populations coexisting with the sunflower crop. If the invasive...

  10. SAMPLING REMOTE IN SITU SITES OF USA WILD POTATO CAPTURES MORE DIVERSITY

    Technology Transfer Automated Retrieval System (TEKTRAN)

    WILD potato populations in the USA grow both in easily-accessed sites near roads (usually relatively low elevations) and in more remote, high-altitude wilderness areas that can only be accessed by long hikes and overnight camping. Both the Chiricahua and Huachuca mountain ranges (SE Arizona) had bee...

  11. ORIGINAL PAPER Eyespan reflects reproductive quality in wild stalk-eyed

    E-print Network

    Cotton, Sam

    (exaggerated eyespan), attractiveness, and reproductive quality in a wild population of the sexually ornamented of sexual selection propose that females use male sexual ornaments as a cue in mate choice because under laboratory conditions. There is a pressing need to address questions relating to sexual signalling

  12. Muscle aging and oxidative stress in wild-caught shrews Allyson G. Hindle a,

    E-print Network

    Campbell, Kevin L.

    Muscle aging and oxidative stress in wild-caught shrews Allyson G. Hindle a, , John M. Lawler b brevicauda Red-toothed shrews (Soricidae, subfamily Soricinae) are an intriguing model system to examine- related decline should be detrimental to fitness and survival. Muscle samples of water shrews (Sorex

  13. Evaluation of the Wonders in Nature-Wonders in Neighborhoods Conservation Education Program: Stakeholders Gone Wild!

    ERIC Educational Resources Information Center

    Somers, Cindy

    2005-01-01

    Wonders in Nature-Wonders in Neighborhoods ((W.I.N.-W.I.N.) has been providing wild-life related conservation education to schoolchildren throughout the Denver metropolitan area since 1996. Specifically designed for students in early childhood education classes through fifth grade, W.I.N.-W.I.N. is intended to heighten children's awareness and…

  14. YouTubeCat: Learning to Categorize Wild Web Videos Zheshen Wang1

    E-print Network

    Cortes, Corinna

    YouTubeCat: Learning to Categorize Wild Web Videos Zheshen Wang1 , Ming Zhao2 , Yang Song2 , Sanjiv categorization of videos in a Web-scale un- constrained collection such as YouTube is a challenging task. A key additional sources such as related videos, searched videos, and text-based webpages. The data from

  15. DYNAMICS OF LOW AND HIGH PATHOGENIC AVIAN INFLUENZA IN WILD BIRD POPULATION

    E-print Network

    Martcheva, Maia

    in the history, which is known as the "Spanish Flu," was H1N1 subtype. Two other major influenza pandemics have viruses. On the other hand, influenza subtype H1N1 that caused the "Spanish Flu" was more related to avianDYNAMICS OF LOW AND HIGH PATHOGENIC AVIAN INFLUENZA IN WILD BIRD POPULATION NECIBE TUNCER, JUAN

  16. Rubisco activity is associated with photosynthetic thermotolerance in a wild rice (Oryza meridionalis)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Oryza meridionalis is a wild species of rice, endemic to tropical Australia. It shares a significant genome homology with the common domesticated rice Oryza sativa. Exploiting the fact that the two species are highly related but O. meridionalis has superior heat tolerance, experiments were undertake...

  17. From Radio Telemetry to Ultra-Low Power Sensor Networks Tracking Bats in the Wild

    E-print Network

    Breu, Ruth

    1 From Radio Telemetry to Ultra-Low Power Sensor Networks ­ Tracking Bats in the Wild Falko tracking solution for bats. Our system is based on integrated localization and wireless communication as ranging solutions for tracking hunting bats. We address the technological and methodical problems related

  18. Plight of the bumble bee: Pathogen spillover from commercial to wild populations

    E-print Network

    Thomson, James D.

    Plight of the bumble bee: Pathogen spillover from commercial to wild populations Sheila R. Colla 2006 Keywords: Bee conservation Bumble bees Crithidia bombi Nosema bombi Pathogen spillover A B S T R with closely-related wildlife populations. Commercially-produced bumble bees used in greenhouse pollination

  19. Growth and fitness components of wild X cultivated Sorghum bicolor (Poaceae) hybrids in Nebraska

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Gene flow between cultivated sorghum [Sorghum bicolor subsp. bicolor (L.) Moench] and its wild relative, shattercane [S. bicolor subsp. drummondii (Nees ex Steud) de Wet & Harlan], may contribute to changes in fitness and the potential invasiveness of shattercane. In order to assess the initial pote...

  20. Validation of yield enhancing QTLs from a low-yielding wild ancestor of rice

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A set of introgression lines (ILs) containing chromosomal segments from O. rufipogon (IRGC 105491), a wild relative of O. sativa, in the genetic background of an elite U.S. variety, cv. Jefferson, was developed to confirm the performance of six yield-enhancing quantitative trait loci (QTLs). Fifty B...

  1. Tales from Camp Wilde: Queer(y)ing Environmental Education Research

    ERIC Educational Resources Information Center

    Gough, Noel; Gough, Annette

    2003-01-01

    This paper questions the relative silence of queer theory and theorizing in environmental education research. We explore some possibilities for queering environmental education research by fabricating (and inviting colleagues to fabricate) stories of Camp Wilde, a fictional location that helps us to expose the facticity of the field's…

  2. CRAZY SEPAL: A NEW FLORAL SEPALLATA-LIKE MUTANT IN THE WILD POTATO SOLANUM MICRODONTUM BITTER

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The major economic impact of features of reproduction in Solanum and its close relatives make basic study of the genetics and physiology of flowering important in this genus. A qualitative floral-development mutant in the wild potato Solanum microdontum Bitter (PI 473166) was discovered that is ost...

  3. Elevated haemocyte number is associated with infection and low fitness potential in wild Daphnia magna

    E-print Network

    Obbard, Darren

    Elevated haemocyte number is associated with infection and low fitness potential in wild Daphnia significance of an immune response is more accurately assessed when it is measured alongside both host fitness numbers in Daphnia magna in relation to an infection that has a clear fitness consequence: infection

  4. The nature of nurture in a wild mammal's fitness.

    PubMed

    McFarlane, S Eryn; Gorrell, Jamieson C; Coltman, David W; Humphries, Murray M; Boutin, Stan; McAdam, Andrew G

    2015-05-01

    Genetic variation in fitness is required for the adaptive evolution of any trait but natural selection is thought to erode genetic variance in fitness. This paradox has motivated the search for mechanisms that might maintain a population's adaptive potential. Mothers make many contributions to the attributes of their developing offspring and these maternal effects can influence responses to natural selection if maternal effects are themselves heritable. Maternal genetic effects (MGEs) on fitness might, therefore, represent an underappreciated source of adaptive potential in wild populations. Here we used two decades of data from a pedigreed wild population of North American red squirrels to show that MGEs on offspring fitness increased the population's evolvability by over two orders of magnitude relative to expectations from direct genetic effects alone. MGEs are predicted to maintain more variation than direct genetic effects in the face of selection, but we also found evidence of maternal effect trade-offs. Mothers that raised high-fitness offspring in one environment raised low-fitness offspring in another environment. Such a fitness trade-off is expected to maintain maternal genetic variation in fitness, which provided additional capacity for adaptive evolution beyond that provided by direct genetic effects on fitness. PMID:25833849

  5. Factors influencing wild turkey hen survival in southcentral Iowa

    USGS Publications Warehouse

    Hubbard, M.W.; Garner, D.L.; Klaas, E.E.

    1999-01-01

    A decline in the population of eastern wild turkeys (Meleagris gallopavo silvestris) in southcentral Iowa necessitated more current estimates of population parameters. Survival of 126 eastern wild turkey hens in southcentral Iowa was investigated during 1993-96. Estimates of annual survival averaged 0.676 ?? 0.048% (x?? ?? SE) for adults and 0.713 ?? 0.125 for subadults. Mammalian predators, primarily coyotes (Canis latrans) and red fox (Vulpes fulva) accounted for 64% of all documented mortality. Age-specific annual survival distributions differed within years (P < 0.03), but no difference was detected in survival between age classes across years (P = 0.49). Based on chronological dates, survival of adult hens differed among seasons across years (P = 0.03). However, seasonal survival was not different when estimates were based on hen behavior (p = 0.48). Risk of mortality for hens increased by 2.0% for every 100-m increase in dispersal distance, decreased by 2.0% for every 10-ha increase in home range size, and decreased by 3.5% for each 1.0% increase in proportion of home range in woody cover. Although the exact cause of the population decline remains unknown, we suggest it was more likely related to a decrease in production than changes in hen survival. Declining turkey populations would likely benefit more from management designed to increase reproduction rather than hen survival.

  6. Wild and synanthropic reservoirs of Leishmania species in the Americas

    PubMed Central

    Roque, André Luiz R.; Jansen, Ana Maria

    2014-01-01

    The definition of a reservoir has changed significantly in the last century, making it necessary to study zoonosis from a broader perspective. One important example is that of Leishmania, zoonotic multi-host parasites maintained by several mammal species in nature. The magnitude of the health problem represented by leishmaniasis combined with the complexity of its epidemiology make it necessary to clarify all of the links in transmission net, including non-human mammalian hosts, to develop effective control strategies. Although some studies have described dozens of species infected with these parasites, only a minority have related their findings to the ecological scenario to indicate a possible role of that host in parasite maintenance and transmission. Currently, it is accepted that a reservoir may be one or a complex of species responsible for maintaining the parasite in nature. A reservoir system should be considered unique on a given spatiotemporal scale. In fact, the transmission of Leishmania species in the wild still represents an complex enzootic “puzzle”, as several links have not been identified. This review presents the mammalian species known to be infected with Leishmania spp. in the Americas, highlighting those that are able to maintain and act as a source of the parasite in nature (and are thus considered potential reservoirs). These host/reservoirs are presented separately in each of seven mammal orders – Marsupialia, Cingulata, Pilosa, Rodentia, Primata, Carnivora, and Chiroptera – responsible for maintaining Leishmania species in the wild. PMID:25426421

  7. Evidence of Melanoma in Wild Marine Fish Populations

    PubMed Central

    Sweet, Michael; Kirkham, Nigel; Bendall, Mark; Currey, Leanne; Bythell, John; Heupel, Michelle

    2012-01-01

    The increase in reports of novel diseases in a wide range of ecosystems, both terrestrial and marine, has been linked to many factors including exposure to novel pathogens and changes in the global climate. Prevalence of skin cancer in particular has been found to be increasing in humans, but has not been reported in wild fish before. Here we report extensive melanosis and melanoma (skin cancer) in wild populations of an iconic, commercially-important marine fish, the coral trout Plectropomus leopardus. The syndrome reported here has strong similarities to previous studies associated with UV induced melanomas in the well-established laboratory fish model Xiphophorus. Relatively high prevalence rates of this syndrome (15%) were recorded at two offshore sites in the Great Barrier Reef Marine Park (GBRMP). In the absence of microbial pathogens and given the strong similarities to the UV-induced melanomas, we conclude that the likely cause was environmental exposure to UV radiation. Further studies are needed to establish the large scale distribution of the syndrome and confirm that the lesions reported here are the same as the melanoma in Xiphophorus, by assessing mutation of the EGFR gene, Xmrk. Furthermore, research on the potential links of this syndrome to increases in UV radiation from stratospheric ozone depletion needs to be completed. PMID:22870273

  8. Muscle Aging and Oxidative Stress in Wild-Caught Shrews

    PubMed Central

    Hindle, Allyson G.; Lawler, John M.; Campbell, Kevin L.; Horning, Markus

    2010-01-01

    Red-toothed shrews (Soricidae, subfamily Soricinae) are an intriguing model system to examine the free radical theory of aging in wild mammals, given their short (<18 month) lifespan and high mass-specific metabolic rates. As muscle performance underlies both foraging ability and predator avoidance, any age-related decline should be detrimental to fitness and survival. Muscle samples of water shrews (Sorex palustris) and sympatrically distributed short-tailed shrews (Blarina brevicauda) were therefore assessed for oxidative stress markers, protective antioxidant enzymes and apoptosis. Activity levels of catalase and glutathione peroxidase increased with age in both species. Similarly, Cu,Zn-superoxide dismutase isoform content was elevated significantly in older animals of both species (increases of 60% in the water shrew, 25% in the short-tailed shrew). Only one oxidative stress marker (lipid peroxidation) was age-elevated; the others were stable or declined (4-hydroxynonenal adducts and dihydroethidium oxidation). Glutathione peroxidase activity was significantly higher in the short-tailed shrew, while catalase activity was 2× higher in water shrews. Oxidative stress indicators were on average higher in short-tailed shrews. Apoptosis occurred in <1% of myocytes examined, and did not increase with age. Within the constraints of the sample size we found evidence of protection against elevated oxidative stress in wild-caught shrews. PMID:20109576

  9. Genetic diversity and population structure of an important wild berry crop

    PubMed Central

    Zoratti, Laura; Palmieri, Luisa; Jaakola, Laura; Häggman, Hely

    2015-01-01

    The success of plant breeding in the coming years will be associated with access to new sources of variation, which will include landraces and wild relatives of crop species. In order to access the reservoir of favourable alleles within wild germplasm, knowledge about the genetic diversity and the population structure of wild species is needed. Bilberry (Vaccinium myrtillus) is one of the most important wild crops growing in the forests of Northern European countries, noted for its nutritional properties and its beneficial effects on human health. Assessment of the genetic diversity of wild bilberry germplasm is needed for efforts such as in situ conservation, on-farm management and development of plant breeding programmes. However, to date, only a few local (small-scale) genetic studies of this species have been performed. We therefore conducted a study of genetic variability within 32 individual samples collected from different locations in Iceland, Norway, Sweden, Finland and Germany, and analysed genetic diversity among geographic groups. Four selected inter-simple sequence repeat primers allowed the amplification of 127 polymorphic loci which, based on analysis of variance, made it possible to identify 85 % of the genetic diversity within studied bilberry populations, being in agreement with the mixed-mating system of bilberry. Significant correlations were obtained between geographic and genetic distances for the entire set of samples. The analyses also highlighted the presence of a north–south genetic gradient, which is in accordance with recent findings on phenotypic traits of bilberry. PMID:26483325

  10. Chloroplast DNA Variations in Wild Brassicas and Their Implication in Breeding and Population Genetics Studies

    PubMed Central

    Sarin, Bharti; Martín, Juan Pedro; Kaula, Babeeta Chrungu; Mohanty, Aparajita

    2015-01-01

    Evaluation of chloroplast DNA (cpDNA) diversity in wild relatives of crop brassicas is important for characterization of cytoplasm and also for population genetics/phylogeographic analyses. The former is useful for breeding programs involving wide hybridization and synthesis of alloplasmic lines, while the latter is important for formulating conservation strategies. Therefore, PCR-RFLP (Polymerase Chain Reaction-Restriction Fragment Length Polymorphism) technique was applied to study cpDNA diversity in 14 wild brassicas (including 31 accessions) which revealed a total of 219 polymorphic fragments. The combination of polymorphisms obtained by using only two primer pair-restriction enzyme combinations was sufficient to distinguish all 14 wild brassicas. Moreover, 11 primer pairs-restriction enzyme combinations revealed intraspecific polymorphisms in eight wild brassicas (including endemic and endangered species, B. cretica and B. insularis, resp.). Thus, even within a small number of accessions that were screened, intraspecific polymorphisms were observed, which is important for population genetics analyses in wild brassicas and consequently for conservation studies. PMID:26347851

  11. Vertebral deformities in hatchery-reared and wild-caught juvenile Japanese flounder, Paralichthys olivaceus

    NASA Astrophysics Data System (ADS)

    Lü, Hongjian; Zhang, Xiumei; Fu, Mei; Xi, Dan; Su, Shengqi; Yao, Weizhi

    2015-01-01

    The present study compared vertebral deformities of hatchery-reared and wild-caught juvenile Japanese flounder, Paralichthys olivaceus. A total of 362 hatchery-reared flounder (total length 122.5-155.8 mm) were collected from three commercial hatcheries located in Yantai, East China, and 89 wild fish (total length 124.7-161.3 mm) were caught off Yangma Island near Yantai City (37°27'N, 121°36'E). All the fish were dissected, photographed, and images of the axial skeleton were examined for vertebral deformities. Compared with wild-caught flounder in which no deformed vertebrae were detected, 48 (13.3%) hatcheryreared fish had deformed vertebrae. The deformities were classified as compression, compression-ankylosis, and dislocation-ankylosis. The vertebral deformities were mainly localized between post-cranial vertebra 1 and 3, with vertebrae number 1 as the most commonly deformed. The causative factors leading to vertebral deformities in reared Japanese flounder may be related to unfavorable temperature conditions, inflammation, damage, or rupture to the intervertebral ligaments under rearing conditions. Furthermore, no significant difference in the total number of vertebral bodies was observed between wild-caught (38.8±0.4) and hatchery-reared flounder (38.1±0.9) ( P>0.05). However, the number of vertebral bodies of hatchery-reared and wild-caught flounder ranged from 35 to 39 and from 38 to 39, respectively.

  12. Incidence and persistence of classical swine fever in free-ranging wild boar (Sus scrofa).

    PubMed Central

    Rossi, S.; Fromont, E.; Pontier, D.; Crucière, C.; Hars, J.; Barrat, J.; Pacholek, X.; Artois, M.

    2005-01-01

    Although veterinary authorities aim to limit persistence of classical swine fever (CSF) in wild boar (Sus scrofa), to avoid potential transmission to pigs, factors influencing CSF transmission and persistence are not clearly understood. Here we analyse incidence and persistence in a CSF epidemic that occurred in the French Vosges Forest. Higher incidence was found in large forests compared to smaller isolated ones, being highest near the starting point of the epidemic, but poorly related to the local density. We hypothesize that the spatial and social structure of wild boar populations may be responsible for this variability of incidence over space. Persistence was highest near the starting point of the epidemic and where initial density was highest. We hypothesize that persistence was favoured by the abundance of young wild boar, itself encouraged by CSF. Our results allow us to propose management measures aimed at limiting CSF persistence. PMID:15962563

  13. Pathology Associated with White Spot Virus (WSV) Infection in Wild Broodstock of Tiger Prawns (Penaeus monodon)

    PubMed Central

    Kua, Beng Chu; Rashid, Noraziah Mat

    2012-01-01

    A total of six wild broodstocks of tiger prawns, Penaeus monodon, were found positive for White Spot Virus (WSV) with an IQ2000 detection kit. Using histopathology, the intranuclear inclusion of haemocyte due to WSV infection was observed in the epithelium cells of the antennal gland, stomach and gills. This result confirmed that the wild broodstocks were positive with WSV without showing any white spot. Additionally, histopathological examination also revealed an accumulation of haemocytes around the hepatopancreatic tubules resulting from bacterial infection. Encapsulation and nodule formation, as well as related necrosis, were also observed around the hepatopancreatic tubules infected with a metazoan parasite. Encysted tylocephalum larval cestodes were observed in the hepatopancreas, with haemocytic aggregation being observed around the infected tubules. These findings showed some bacterial and parasitic infections which, in addition to the viral infection itself, could contribute to the 80% mortality rate in wild broodstocks infected with WSV. PMID:24575228

  14. Quality control method for commercially available wild Jujube leaf tea based on HPLC characteristic fingerprint analysis of flavonoid compounds.

    PubMed

    Zhang, Rutan; Chen, Junhui; Shi, Qian; Li, Zhaoyong; Peng, Zhengyun; Zheng, Li; Wang, Xiaoru

    2014-01-01

    Flavonoids are the main active components of natural medicinal plants with many physiological functions. In this study, an HPLC fingerprinting method based on the distribution and relative amount of 11 bioactive flavonoids was established for the quality evaluation of commercially available wild Jujube leaf tea (JLT) from China. Separation of the crude flavonoid extract was achieved on a column filled with C18 material with a high carbon content. The flavonoids in wild JLT were identified based on UV spectroscopy and accurate mass measurements by TOF-MS. Twenty-one batches of practical samples collected from different habitats were analyzed by using the developed HPLC method to construct the HPLC characteristic fingerprint of wild JLT. Then, combined with clustering and similarity analyses, the HPLC characteristic fingerprint was used for the authentication and quality evaluation of commercial wild JLT. Results indicated that the proposed HPLC characteristic fingerprint reflected the inherent characteristics of wild JLT collected from different regions. Authenticity identification and quality control of commercially available wild Jujube tea were achieved based on the HPLC characteristic fingerprint analysis. This new approach to bioactive component profiling provided a promising reference method for the quality evaluation of commercial wild flower and plant tea. PMID:24166761

  15. Wild/Feral Pigs/Swine in CA Dennis Orthmeyer -CA State Director

    E-print Network

    Tate, Kenneth

    pig escape from Spanish missions 1926: Eurasian wild boar type wild pigs released 1957: Wild pigs Salmonella Swine Influenza Virus Swine Brucellosis Toxoplasmosis Trichinella Tularemia Ca Game Mammal #12 escape from Spanish missions 1926: Eurasian wild boar type wild pigs released 1957: Wild pigs classified

  16. Complex Links between Natural Tuberculosis and Porcine Circovirus Type 2 Infection in Wild Boar

    PubMed Central

    Díez-Delgado, Iratxe; Martín-Hernando, MariPaz; Barasona, José Angel; Beltrán-Beck, Beatriz; González-Barrio, David; Vicente, Joaquín; Garrido, Joseba M.

    2014-01-01

    Individuals in natural populations are exposed to a diversity of pathogens which results in coinfections. The aim of this study was to investigate the relation between natural infection with tuberculosis (TB) due to infection by bacteria of the Mycobacterium tuberculosis complex and porcine circovirus type 2 (PCV2) in free-ranging Eurasian wild boar (Sus scrofa). Apparent prevalence for TB lesions and PCV2 infection was extremely high in all age classes, including piglets (51% for TB; 85.7% for PCV2). Modeling results revealed that the relative risk of young (less than 2 years old) wild boar to test positive to PCV2 PCR was negatively associated with TB lesion presence. Also, an interaction between TB, PCV2, and body condition was evidenced: in wild boar with TB lesions probability of being PCV2 PCR positive increased with body condition, whereas this relation was negative for wild boar without TB lesions. This study provides insight into the coinfections occurring in free-ranging host populations that are naturally exposed to several pathogens at an early age. Using TB and PCV2 as a case study, we showed that coinfection is a frequent event among natural populations that takes place early in life with complex effects on the infections and the hosts. PMID:24991567

  17. Avian Coronavirus in Wild Aquatic Birds?†‡

    PubMed Central

    Chu, Daniel K. W.; Leung, Connie Y. H.; Gilbert, Martin; Joyner, Priscilla H.; Ng, Erica M.; Tse, Tsemay M.; Guan, Yi; Peiris, Joseph S. M.; Poon, Leo L. M.

    2011-01-01

    We detected a high prevalence (12.5%) of novel avian coronaviruses in aquatic wild birds. Phylogenetic analyses of these coronaviruses suggest that there is a diversity of gammacoronaviruses and deltacoronaviruses circulating in birds. Gammacoronaviruses were found predominantly in Anseriformes birds, whereas deltacoronaviruses could be detected in Ciconiiformes, Pelecaniformes, and Anseriformes birds in this study. We observed that there are frequent interspecies transmissions of gammacoronaviruses between duck species. In contrast, deltacoronaviruses may have more stringent host specificities. Our analysis of these avian viral and host mitochondrial DNA sequences also suggests that some, but not all, coronaviruses may have coevolved with birds from the same order. PMID:21957308

  18. Capillaria hepatica infection of wild rodents in Peninsular Malaysia.

    PubMed

    Liat, L B; Fong, Y L; Krishnasamy, M

    1977-09-01

    Capillaria hepatica infection in wild rodents collected from the States of Kelantan, Selangor and Johore in Peninsular Malaysia since 1973 is reported. A total of 1,258 rodents consisting of 20 species of house, field and forest rats, and 7 species of squirrels were examined for the parasite and 17 species consisting of 111 murids and 1 flying squirrel were found infected. The house rat, Rattus norvegicus had the highest prevalence rate, followed by 3 species of field rats, R. tiomanicus, R. argentiventer and Bandicota indica. The prevalence of infection was low among forest rats with the exception of Lenothrix canus. Only 1 flying squirrel, Hylopetes spadiceus was found with the parasite. The prevalence of infection in relation to the host behaviour and habitats was discussed. C. hepatica appears to be widespread throughout Malaysia with a wide range of hosts among rodent species. Some new host records are presented herein. PMID:607425

  19. Phytochemical and Biological Activities of Four Wild Medicinal Plants

    PubMed Central

    Ahmad, Shabir; AbdEl-Salam, Naser M.; Fouad, H.; Rehman, Najeeb Ur; Hussain, Hidayat; Saeed, Wajid

    2014-01-01

    The fruits of four wild plants, namely, Capparis decidua, Ficus carica, Syzygium cumini, and Ziziphus jujuba, are separately used as traditional dietary and remedial agents in remote areas of Khyber Pakhtunkhwa, Pakistan. The results of our study on these four plants revealed that the examined fruits were a valuable source of nutraceuticals and exhibited good level of antimicrobial activity. The fruits of these four investigated plants are promising source of polyphenols, flavonoids, alkaloids, terpenoids, and saponins. These four plants' fruits are good sources of iron, zinc, copper, manganese, selenium, and chromium. It was also observed that these fruits are potential source of antioxidant agent and the possible reason could be that these samples had good amount of phytochemicals. Hence, the proper propagation, conservation, and chemical investigation are recommended so that these fruits should be incorporated for the eradication of food and health related problems. PMID:25374941

  20. Organics Captured from Comet Wild 2 by the Stardust Spacecraft

    NASA Technical Reports Server (NTRS)

    Sandford, Scott A.; Aleon, Jerome; Araki, Tohru; Bajt, Sasa; Baratta, Giuseppe A.; Borg, Janet; Brucato, John R.; Burchell, Mark J.; Busemann, Henner; Butterworth, Anna; Clemett, Simon J.; Cody, George; Colangeli, Luigi; Cooper, George; D'Hendecourt, Louis; Djouadi, Zahia; Dworkin, Jason P.; Ferrini, Gianluca; Fleckenstein, Holger; Flynn, George J.; Franchi, Ian A.; Fries, Mark; Gilles, Mary K.; Glavin, Daniel P.; Gounelle, Matthieu

    2007-01-01

    Organics found in Comet Wild 2 samples show a heterogeneous and unequilibrated distribution in abundance and composition. Some are similar, but not identical, to those in interplanetary dust particles (IDPs) and carbonaceous meteorites. A new class of aromatic-poor organic material is also present. The organics are rich in O and N compared to meteoritic organics. Aromatic compounds are present, but the samples tend to be relatively poorer in aromatics than meteorites and IDPs. D and 15N suggest that some organics have an interstellar/protostellar heritage. While the variable extent of modification of these materials by impact capture is not yet fully constrained, a remarkably diverse suite of organic compounds is present and identifiable within the returned samples.

  1. Phytochemical and biological activities of four wild medicinal plants.

    PubMed

    Shad, Anwar Ali; Ahmad, Shabir; Ullah, Riaz; AbdEl-Salam, Naser M; Fouad, H; Ur Rehman, Najeeb; Hussain, Hidayat; Saeed, Wajid

    2014-01-01

    The fruits of four wild plants, namely, Capparis decidua, Ficus carica, Syzygium cumini, and Ziziphus jujuba, are separately used as traditional dietary and remedial agents in remote areas of Khyber Pakhtunkhwa, Pakistan. The results of our study on these four plants revealed that the examined fruits were a valuable source of nutraceuticals and exhibited good level of antimicrobial activity. The fruits of these four investigated plants are promising source of polyphenols, flavonoids, alkaloids, terpenoids, and saponins. These four plants' fruits are good sources of iron, zinc, copper, manganese, selenium, and chromium. It was also observed that these fruits are potential source of antioxidant agent and the possible reason could be that these samples had good amount of phytochemicals. Hence, the proper propagation, conservation, and chemical investigation are recommended so that these fruits should be incorporated for the eradication of food and health related problems. PMID:25374941

  2. [A study of the wild and captive green peafowl(Pavo muticus) by random-amplified polymorphic DNA].

    PubMed

    Chang, Hong; Ke, Ya-Yong; Su, Ying-Juan; Zhang, Guo-Ping; Zhu, Shi-Jie

    2002-05-01

    Random-amplified polymorphic DNA (RAPD) was used to investigate the genetic diversity of the population of 14 wild green peafowl and 18 captive green peafowl (Pavo muticus). Total of 161 and 166 bands were obtained respectively, and 23 random primers were used to amplify the genomic DNA of the wild and captive green peafowls. The average relative hereditary distance of the wild and captive green peafowls is 0.0555 and 0.1355 respectively; and the Shannon diversity index is 0.4348 and 1.0163 respectively. There is a prominent difference between the two populations by T-Test of HO. All the analyses above show that the genetic diversity is very low in wild green peafowl. It tells us that the two populations come from two families by using UPGMA, which can be useful in the breeding management in the future. PMID:16126680

  3. Rearing in Seawater Mesocosms Improves the Spawning Performance of Growth Hormone Transgenic and Wild-Type Coho Salmon

    PubMed Central

    Leggatt, Rosalind A.; Hollo, Tanya; Vandersteen, Wendy E.; McFarlane, Kassandra; Goh, Benjamin; Prevost, Joelle; Devlin, Robert H.

    2014-01-01

    Growth hormone (GH) transgenes can significantly accelerate growth rates in fish and cause associated alterations to their physiology and behaviour. Concern exists regarding potential environmental risks of GH transgenic fish, should they enter natural ecosystems. In particular, whether they can reproduce and generate viable offspring under natural conditions is poorly understood. In previous studies, GH transgenic salmon grown under contained culture conditions had lower spawning behaviour and reproductive success relative to wild-type fish reared in nature. However, wild-type salmon cultured in equal conditions also had limited reproductive success. As such, whether decreased reproductive success of GH transgenic salmon is due to the action of the transgene or to secondary effects of culture (or a combination) has not been fully ascertained. Hence, salmon were reared in large (350,000 L), semi-natural, seawater tanks (termed mesocosms) designed to minimize effects of standard laboratory culture conditions, and the reproductive success of wild-type and GH transgenic coho salmon from mesocosms were compared with that of wild-type fish from nature. Mesocosm rearing partially restored spawning behaviour and success of wild-type fish relative to culture rearing, but remained lower overall than those reared in nature. GH transgenic salmon reared in the mesocosm had similar spawning behaviour and success as wild-type fish reared in the mesocosm when in full competition and without competition, but had lower success in male-only competition experiments. There was evidence of genotype×environmental interactions on spawning success, so that spawning success of transgenic fish, should they escape to natural systems in early life, cannot be predicted with low uncertainty. Under the present conditions, we found no evidence to support enhanced mating capabilities of GH transgenic coho salmon compared to wild-type salmon. However, it is clear that GH transgenic salmon are capable of successful spawning, and can reproduce with wild-type fish from natural systems. PMID:25133780

  4. Wild chimpanzees are infected by Trypanosoma brucei.

    PubMed

    Jirk?, Milan; Votýpka, Jan; Petrželková, Klára J; Jirk?-Pomajbíková, Kate?ina; Kriegová, Eva; Vodi?ka, Roman; Lankester, Felix; Leendertz, Siv Aina J; Wittig, Roman M; Boesch, Christophe; Modrý, David; Ayala, Francisco J; Leendertz, Fabian H; Lukeš, Julius

    2015-12-01

    Although wild chimpanzees and other African great apes live in regions endemic for African sleeping sickness, very little is known about their trypanosome infections, mainly due to major difficulties in obtaining their blood samples. In present work, we established a diagnostic ITS1-based PCR assay that allows detection of the DNA of all four Trypanosoma brucei subspecies (Trypanosoma brucei brucei, Trypanosoma brucei rhodesiense, Trypanosoma brucei gambiense, and Trypanosoma brucei evansi) in feces of experimentally infected mice. Next, using this assay we revealed the presence of trypanosomes in the fecal samples of wild chimpanzees and this finding was further supported by results obtained using a set of primate tissue samples. Phylogenetic analysis of the ITS1 region showed that the majority of obtained sequences fell into the robust T. brucei group, providing strong evidence that these infections were caused by T. b. rhodesiense and/or T. b. gambiense. The optimized technique of trypanosome detection in feces will improve our knowledge about the epidemiology of trypanosomes in primates and possibly also other endangered mammals, from which blood and tissue samples cannot be obtained. Finally, we demonstrated that the mandrill serum was able to efficiently lyse T. b. brucei and T. b. rhodesiense, and to some extent T. b. gambiense, while the chimpanzee serum failed to lyse any of these subspecies. PMID:26110113

  5. Wild chimpanzees are infected by Trypanosoma brucei

    PubMed Central

    Jirk?, Milan; Votýpka, Jan; Petrželková, Klára J.; Jirk?-Pomajbíková, Kate?ina; Kriegová, Eva; Vodi?ka, Roman; Lankester, Felix; Leendertz, Siv Aina J.; Wittig, Roman M.; Boesch, Christophe; Modrý, David; Ayala, Francisco J.; Leendertz, Fabian H.; Lukeš, Julius

    2015-01-01

    Although wild chimpanzees and other African great apes live in regions endemic for African sleeping sickness, very little is known about their trypanosome infections, mainly due to major difficulties in obtaining their blood samples. In present work, we established a diagnostic ITS1-based PCR assay that allows detection of the DNA of all four Trypanosoma brucei subspecies (Trypanosoma bruceibrucei, Trypanosoma bruceirhodesiense, Trypanosoma bruceigambiense, and Trypanosoma bruceievansi) in feces of experimentally infected mice. Next, using this assay we revealed the presence of trypanosomes in the fecal samples of wild chimpanzees and this finding was further supported by results obtained using a set of primate tissue samples. Phylogenetic analysis of the ITS1 region showed that the majority of obtained sequences fell into the robust T. brucei group, providing strong evidence that these infections were caused by T. b. rhodesiense and/or T. b. gambiense. The optimized technique of trypanosome detection in feces will improve our knowledge about the epidemiology of trypanosomes in primates and possibly also other endangered mammals, from which blood and tissue samples cannot be obtained. Finally, we demonstrated that the mandrill serum was able to efficiently lyse T. b. brucei and T. b. rhodesiense, and to some extent T. b. gambiense, while the chimpanzee serum failed to lyse any of these subspecies. PMID:26110113

  6. Transport of Wild-Type and Recombinant Nucleopolyhedroviruses by Scavenging and Predatory Arthropods.

    PubMed

    Lee; Fuxa

    2000-05-01

    Wild-type and recombinant nucleopolyhedroviruses (NPVs) were compared in their capability to be transported over limited distances by the predator Podisus maculiventris (Say) and scavengers Sarcophaga bullata (Parker) and Acheta domesticus (Linnaeus) in Trichoplusia ni (Hübner) larvae infesting collards in a greenhouse microcosm. Viruses tested were variants of Autographa californica (Speyer) NPV (AcNPV): wild-type virus (AcNPV.WT), AcNPV expressing a scorpion toxin (AcNPV.AaIT), and AcNPV expressing juvenile hormone esterase (AcJHE.SG). Podisus maculiventris transported AcNPV.WT and S. bullata transported AcNPV.WT and AcNPV.AaIT. Prevalence and transport of AcNPV.WT were greater than those of AcNPV.AaIT and AcJHE.SG, regardless of whether the nontarget organism carriers were present or absent. Podisus maculiventris and S. bullata transported recombinant and wild-type NPVs at a rate of up to 62.5 cm/day, and A. domesticus transported wild-type NPV at 125 cm/day. The infected host insects, T. ni, undoubtedly contributed to viral transport in the current research. In every experiment, both the wild-type and recombinant virus spread to some degree in the plots without predators or scavengers. The relative amounts of NPVs that accumulated in soil, as indicated by bioassay mortality percentages, generally exhibited spatial patterns similar to those of T. ni mortality due to NPV on the collards plants. Thus, the predator and scavengers in the current research demonstrated some capacity to transport wild-type as well as recombinant viruses at significant rates in a greenhouse microcosm. PMID:10882435

  7. Perfluorooctanoic acid and perfluorooctane sulfonate in liver and muscle tissue from wild boar in Hesse, Germany.

    PubMed

    Stahl, T; Falk, S; Failing, K; Berger, J; Georgii, S; Brunn, H

    2012-05-01

    Approximately 15,000 tons of wild boar meats (Sus scrofa) are consumed per year in Germany. Boar meat therefore plays a definite role in regard to human diet. Because they are omnivores and because of their high body fat quotient, wild boar may accumulate large concentrations of persistent organic compounds, such as halogenated hydrocarbons, and could thus possibly serve as bioindicators for persistent xenobiotics. In addition, consumption of wild boar meat and liver could lead to increased contaminant levels in humans. Between 2007 and 2009, we tested a total of 529 livers and 506 muscle tissue samples from wild boar for the presence of perfluorooctanoic acid (PFOA) and perfluorooctane sulfonate (PFOS). PFOA concentrations ?45 ?g/kg and PFOS concentrations ?1,780 ?g/kg were detected in the liver samples. PFOA concentrations ?7.4 ?g/kg and PFOS concentrations ?28.6 ?g/kg were detected in muscle tissue. Our results show that PFOS may be detected in considerably greater concentrations than PFOA in organs and tissues, which is in agreement with results from other published studies. The comparisons between both organs for the same substance, as well as the comparisons between the substances within an organ, showed clear and statistically significant differences at P < 0.0001. Assuming a tolerable daily intake value of PFOA (1.5 ?g/kg bw/d) and PFOS (0.15 ?g/kg bw/d) as recommended by the European Food Safety Authority, the results of model calculations based on the maximum concentrations of PFOA and PFOS found in wild boar indicate that there should be no PFC-related health danger resulting from moderate consumption of wild boar meat or liver. PMID:22108952

  8. A Comparison of Brain Gene Expression Levels in Domesticated and Wild Animals

    PubMed Central

    Albert, Frank W.; Somel, Mehmet; Carneiro, Miguel; Aximu-Petri, Ayinuer; Halbwax, Michel; Thalmann, Olaf; Blanco-Aguiar, Jose A.; Trut, Lyudmila; Villafuerte, Rafael; Ferrand, Nuno; Kaiser, Sylvia; Jensen, Per; Pääbo, Svante

    2012-01-01

    Domestication has led to similar changes in morphology and behavior in several animal species, raising the question whether similarities between different domestication events also exist at the molecular level. We used mRNA sequencing to analyze genome-wide gene expression patterns in brain frontal cortex in three pairs of domesticated and wild species (dogs and wolves, pigs and wild boars, and domesticated and wild rabbits). We compared the expression differences with those between domesticated guinea pigs and a distant wild relative (Cavia aperea) as well as between two lines of rats selected for tameness or aggression towards humans. There were few gene expression differences between domesticated and wild dogs, pigs, and rabbits (30–75 genes (less than 1%) of expressed genes were differentially expressed), while guinea pigs and C. aperea differed more strongly. Almost no overlap was found between the genes with differential expression in the different domestication events. In addition, joint analyses of all domesticated and wild samples provided only suggestive evidence for the existence of a small group of genes that changed their expression in a similar fashion in different domesticated species. The most extreme of these shared expression changes include up-regulation in domesticates of SOX6 and PROM1, two modulators of brain development. There was almost no overlap between gene expression in domesticated animals and the tame and aggressive rats. However, two of the genes with the strongest expression differences between the rats (DLL3 and DHDH) were located in a genomic region associated with tameness and aggression, suggesting a role in influencing tameness. In summary, the majority of brain gene expression changes in domesticated animals are specific to the given domestication event, suggesting that the causative variants of behavioral domestication traits may likewise be different. PMID:23028369

  9. Performance of Generalist and Specialist Herbivores and their Endoparasitoids Differs on Cultivated and Wild Brassica Populations

    PubMed Central

    Bukovinszky, Tibor; van Dam, Nicole M.; Dicke, Marcel; Bullock, James M.; Harvey, Jeffrey A.

    2008-01-01

    Through artificial selection, domesticated plants often contain modified levels of primary and secondary metabolites compared to their wild progenitors. It is hypothesized that the changed chemistry of cultivated plants will affect the performance of insects associated with these plants. In this paper, the development of several specialist and generalist herbivores and their endoparasitoids were compared when reared on a wild and cultivated population of cabbage, Brassica oleracea, and a recently established feral Brassica species. Irrespective of insect species or the degree of dietary specialization, herbivores and parasitoids developed most poorly on the wild population. For the specialists, plant population influenced only development time and adult body mass, whereas for the generalists, plant populations also affected egg-to-adult survival. Two parasitoid species, a generalist (Diadegma fenestrale) and a specialist (D. semiclausum), were reared from the same host (Plutella xylostella). Performance of D. semiclausum was closely linked to that of its host, whereas the correlation between survival of D. fenestrale and host performance was less clear. Plants in the Brassicaceae characteristically produce defense-related glucosinolates (GS). Levels of GS in leaves of undamaged plants were significantly higher in plants from the wild population than from the domesticated populations. Moreover, total GS concentrations increased significantly in wild plants after herbivory, but not in domesticated or feral plants. The results of this study reveal that a cabbage cultivar and plants from a wild cabbage population exhibit significant differences in quality in terms of their effects on the growth and development of insect herbivores and their natural enemies. Although cultivated plants have proved to be model systems in agroecology, we argue that some caution should be applied to evolutionary explanations derived from studies on domesticated plants, unless some knowledge exists on the history of the system under investigation. PMID:18231835

  10. Seropositivity and Risk Factors Associated with Toxoplasma gondii Infection in Wild Birds from Spain

    PubMed Central

    Cabezón, Oscar; García-Bocanegra, Ignacio; Molina-López, Rafael; Marco, Ignasi; Blanco, Juan M.; Höfle, Ursula; Margalida, Antoni; Bach-Raich, Esther; Darwich, Laila; Echeverría, Israel; Obón, Elena; Hernández, Mauro; Lavín, Santiago; Dubey, Jitender P.; Almería, Sonia

    2011-01-01

    Toxoplasma gondii is a zoonotic intracellular protozoan parasite of worldwide distribution that infects many species of warm-blooded animals, including birds. To date, there is scant information about the seropositivity of T. gondii and the risk factors associated with T. gondii infection in wild bird populations. In the present study, T. gondii infection was evaluated on sera obtained from 1079 wild birds belonging to 56 species (including Falconiformes (n?=?610), Strigiformes (n?=?260), Ciconiiformes (n?=?156), Gruiformes (n?=?21), and other orders (n?=?32), from different areas of Spain. Antibodies to T. gondii (modified agglutination test, MAT titer ?1?25) were found in 282 (26.1%, IC95%:23.5–28.7) of the 1079 birds. This study constitute the first extensive survey in wild birds species in Spain and reports for the first time T. gondii antibodies in the griffon vulture (Gyps fulvus), short-toed snake-eagle (Circaetus gallicus), Bonelli's eagle (Aquila fasciata), golden eagle (Aquila chrysaetos), bearded vulture (Gypaetus barbatus), osprey (Pandion haliaetus), Montagu's harrier (Circus pygargus), Western marsh-harrier (Circus aeruginosus), peregrine falcon (Falco peregrinus), long-eared owl (Asio otus), common scops owl (Otus scops), Eurasian spoonbill (Platalea leucorodia), white stork (Ciconia ciconia), grey heron (Ardea cinerea), common moorhen (Gallinula chloropus); in the International Union for Conservation of Nature (IUCN) “vulnerable” Spanish imperial eagle (Aquila adalberti), lesser kestrel (Falco naumanni) and great bustard (Otis tarda); and in the IUCN “near threatened” red kite (Milvus milvus). The highest seropositivity by species was observed in the Eurasian eagle owl (Bubo bubo) (68.1%, 98 of 144). The main risk factors associated with T. gondii seropositivity in wild birds were age and diet, with the highest exposure in older animals and in carnivorous wild birds. The results showed that T. gondii infection is widespread and can be at a high level in many wild birds in Spain, most likely related to their feeding behaviour. PMID:22216311

  11. Seropositivity and risk factors associated with Toxoplasma gondii infection in wild birds from Spain.

    PubMed

    Cabezón, Oscar; García-Bocanegra, Ignacio; Molina-López, Rafael; Marco, Ignasi; Blanco, Juan M; Höfle, Ursula; Margalida, Antoni; Bach-Raich, Esther; Darwich, Laila; Echeverría, Israel; Obón, Elena; Hernández, Mauro; Lavín, Santiago; Dubey, Jitender P; Almería, Sonia

    2011-01-01

    Toxoplasma gondii is a zoonotic intracellular protozoan parasite of worldwide distribution that infects many species of warm-blooded animals, including birds. To date, there is scant information about the seropositivity of T. gondii and the risk factors associated with T. gondii infection in wild bird populations. In the present study, T. gondii infection was evaluated on sera obtained from 1079 wild birds belonging to 56 species (including Falconiformes (n=610), Strigiformes (n=260), Ciconiiformes (n=156), Gruiformes (n=21), and other orders (n=32), from different areas of Spain. Antibodies to T. gondii (modified agglutination test, MAT titer ?1:25) were found in 282 (26.1%, IC(95%:)23.5-28.7) of the 1079 birds. This study constitute the first extensive survey in wild birds species in Spain and reports for the first time T. gondii antibodies in the griffon vulture (Gyps fulvus), short-toed snake-eagle (Circaetus gallicus), Bonelli's eagle (Aquila fasciata), golden eagle (Aquila chrysaetos), bearded vulture (Gypaetus barbatus), osprey (Pandion haliaetus), Montagu's harrier (Circus pygargus), Western marsh-harrier (Circus aeruginosus), peregrine falcon (Falco peregrinus), long-eared owl (Asio otus), common scops owl (Otus scops), Eurasian spoonbill (Platalea leucorodia), white stork (Ciconia ciconia), grey heron (Ardea cinerea), common moorhen (Gallinula chloropus); in the International Union for Conservation of Nature (IUCN) "vulnerable" Spanish imperial eagle (Aquila adalberti), lesser kestrel (Falco naumanni) and great bustard (Otis tarda); and in the IUCN "near threatened" red kite (Milvus milvus). The highest seropositivity by species was observed in the Eurasian eagle owl (Bubo bubo) (68.1%, 98 of 144). The main risk factors associated with T. gondii seropositivity in wild birds were age and diet, with the highest exposure in older animals and in carnivorous wild birds. The results showed that T. gondii infection is widespread and can be at a high level in many wild birds in Spain, most likely related to their feeding behaviour. PMID:22216311

  12. Variation in Susceptibility to Wheat dwarf virus among Wild and Domesticated Wheat

    PubMed Central

    Nygren, Jim; Shad, Nadeem; Kvarnheden, Anders; Westerbergh, Anna

    2015-01-01

    We investigated the variation in plant response in host-pathogen interactions between wild (Aegilops spp., Triticum spp.) and domesticated wheat (Triticum spp.) and Wheat dwarf virus (WDV). The distribution of WDV and its wild host species overlaps in Western Asia in the Fertile Crescent, suggesting a coevolutionary relationship. Bread wheat originates from a natural hybridization between wild emmer wheat (carrying the A and B genomes) and the wild D genome donor Aegilops tauschii, followed by polyploidization and domestication. We studied whether the strong selection during these evolutionary processes, leading to genetic bottlenecks, may have resulted in a loss of resistance in domesticated wheat. In addition, we investigated whether putative fluctuations in intensity of selection imposed on the host-pathogen interactions have resulted in a variation in susceptibility to WDV. To test our hypotheses we evaluated eighteen wild and domesticated wheat taxa, directly or indirectly involved in wheat evolution, for traits associated with WDV disease such as leaf chlorosis, different growth traits and WDV content. The plants were exposed to viruliferous leafhoppers (Psammotettix alienus) in a greenhouse trial and evaluated at two time points. We found three different plant response patterns: i) continuous reduction in growth over time, ii) weak response at an early stage of plant development but a much stronger response at a later stage, and iii) remission of symptoms over time. Variation in susceptibility may be explained by differences in the intensity of natural selection, shaping the coevolutionary interaction between WDV and the wild relatives. However, genetic bottlenecks during wheat evolution have not had a strong impact on WDV resistance. Further, this study indicates that the variation in susceptibility may be associated with the genome type and that the ancestor Ae. tauschii may be useful as genetic resource for the improvement of WDV resistance in wheat. PMID:25837893

  13. Effective size of a wild salmonid population is greatly reduced by hatchery supplementation

    PubMed Central

    Christie, M R; Marine, M L; French, R A; Waples, R S; Blouin, M S

    2012-01-01

    Many declining and commercially important populations are supplemented with captive-born individuals that are intentionally released into the wild. These supplementation programs often create large numbers of offspring from relatively few breeding adults, which can have substantial population-level effects. We examined the genetic effects of supplementation on a wild population of steelhead (Oncorhynchus mykiss) from the Hood River, Oregon, by matching 12 run-years of hatchery steelhead back to their broodstock parents. We show that the effective number of breeders producing the hatchery fish (broodstock parents; Nb) was quite small (harmonic mean Nb=25 fish per brood-year vs 373 for wild fish), and was exacerbated by a high variance in broodstock reproductive success among individuals within years. The low Nb caused hatchery fish to have decreased allelic richness, increased average relatedness, more loci in linkage disequilibrium and substantial levels of genetic drift in comparison with their wild-born counterparts. We also documented a substantial Ryman–Laikre effect whereby the additional hatchery fish doubled the total number of adult fish on the spawning grounds each year, but cut the effective population size of the total population (wild and hatchery fish combined) by nearly two-thirds. We further demonstrate that the Ryman–Laikre effect is most severe in this population when (1) >10% of fish allowed onto spawning grounds are from hatcheries and (2) the hatchery fish have high reproductive success in the wild. These results emphasize the trade-offs that arise when supplementation programs attempt to balance disparate goals (increasing production while maintaining genetic diversity and fitness). PMID:22805657

  14. Hybridization between genetically modified Atlantic salmon and wild brown trout reveals novel ecological interactions

    PubMed Central

    Oke, Krista B.; Westley, Peter A. H.; Moreau, Darek T. R.; Fleming, Ian A.

    2013-01-01

    Interspecific hybridization is a route for transgenes from genetically modified (GM) animals to invade wild populations, yet the ecological effects and potential risks that may emerge from such hybridization are unknown. Through experimental crosses, we demonstrate transmission of a growth hormone transgene via hybridization between a candidate for commercial aquaculture production, GM Atlantic salmon (Salmo salar) and closely related wild brown trout (Salmo trutta). Transgenic hybrids were viable and grew more rapidly than transgenic salmon and other non-transgenic crosses in hatchery-like conditions. In stream mesocosms designed to more closely emulate natural conditions, transgenic hybrids appeared to express competitive dominance and suppressed the growth of transgenic and non-transgenic (wild-type) salmon by 82 and 54 per cent, respectively. To the best of our knowledge, this is the first demonstration of environmental impacts of hybridization between a GM animal and a closely related species. These results provide empirical evidence of the first steps towards introgression of foreign transgenes into the genomes of new species and contribute to the growing evidence that transgenic animals have complex and context-specific interactions with wild populations. We suggest that interspecific hybridization be explicitly considered when assessing the environmental consequences should transgenic animals escape to nature. PMID:23720549

  15. Characterisation of pseudorabies virus in domestic pigs and wild boars in Croatia.

    PubMed

    Keros, Tomislav; Brni?, Dragan; Prpi?, Jelena; Dež?ek, Danko; Jemerši?, Lorena; Roi?, Besi; Bedekovi?, Tomislav

    2014-12-01

    Serological data imply that pseudorabies (Aujeszky's disease) is present in domestic pigs and wild boars in Croatia. Therefore, this study included testing of brain tissue samples collected from 200 domestic pigs and 105 wild boars originating from seventeen districts of Croatia. The presence of pseudorabies virus (PrV) DNA was confirmed in samples originating from six domestic pigs (3%) and one wild boar (0.95%). Positive samples were sequenced and analysed on the basis of a gC genome fragment. PrV strains have shown to be genetically identical and they are strongly related to some representative strains in the relatively heterogeneous Clade A. The results clearly show that PrV is still circulating among the domestic pig population in Croatia. Furthermore, the presence of pseudorabies virus in wild boars underlines the importance of this species as a PrV reservoir. Continued surveillance is necessary to track the viral spread in order to achieve final eradication of the disease. PMID:25410393

  16. Long-Lasting, Kin-Directed Female Interactions in a Spatially Structured Wild Boar Social Network

    PubMed Central

    Podgórski, Tomasz; Lusseau, David; Scandura, Massimo; Sönnichsen, Leif; J?drzejewska, Bogumi?a

    2014-01-01

    Individuals can increase inclusive fitness benefits through a complex network of social interactions directed towards kin. Preferential relationships with relatives lead to the emergence of kin structures in the social system. Cohesive social groups of related individuals and female philopatry of wild boar create conditions for cooperation through kin selection and make the species a good biological model for studying kin structures. Yet, the role of kinship in shaping the social structure of wild boar populations is still poorly understood. In the present study, we investigated spatio-temporal patterns of associations and the social network structure of the wild boar Sus scrofa population in Bia?owie?a National Park, Poland, which offered a unique opportunity to understand wild boar social interactions away from anthropogenic factors. We used a combination of telemetry data and genetic information to examine the impact of kinship on network cohesion and the strength of social bonds. Relatedness and spatial proximity between individuals were positively related to the strength of social bond. Consequently, the social network was spatially and genetically structured with well-defined and cohesive social units. However, spatial proximity between individuals could not entirely explain the association patterns and network structure. Genuine, kin-targeted, and temporarily stable relationships of females extended beyond spatial proximity between individuals while males interactions were short-lived and not shaped by relatedness. The findings of this study confirm the matrilineal nature of wild boar social structure and show how social preferences of individuals translate into an emergent socio-genetic population structure. PMID:24919178

  17. Language Understanding in the Wild: Combining Crowdsourcing and Machine Learning

    E-print Network

    Kohli, Pushmeet

    Language Understanding in the Wild: Combining Crowdsourcing and Machine Learning Edwin Simpson, machine learning, variational Bayes, classi- fier combination, text classification, sentiment analysis, hu

  18. The roles and values of wild foods in agricultural systems

    PubMed Central

    Bharucha, Zareen; Pretty, Jules

    2010-01-01

    Almost every ecosystem has been amended so that plants and animals can be used as food, fibre, fodder, medicines, traps and weapons. Historically, wild plants and animals were sole dietary components for hunter–gatherer and forager cultures. Today, they remain key to many agricultural communities. The mean use of wild foods by agricultural and forager communities in 22 countries of Asia and Africa (36 studies) is 90–100 species per location. Aggregate country estimates can reach 300–800 species (e.g. India, Ethiopia, Kenya). The mean use of wild species is 120 per community for indigenous communities in both industrialized and developing countries. Many of these wild foods are actively managed, suggesting there is a false dichotomy around ideas of the agricultural and the wild: hunter–gatherers and foragers farm and manage their environments, and cultivators use many wild plants and animals. Yet, provision of and access to these sources of food may be declining as natural habitats come under increasing pressure from development, conservation-exclusions and agricultural expansion. Despite their value, wild foods are excluded from official statistics on economic values of natural resources. It is clear that wild plants and animals continue to form a significant proportion of the global food basket, and while a variety of social and ecological drivers are acting to reduce wild food use, their importance may be set to grow as pressures on agricultural productivity increase. PMID:20713393

  19. Annual report for 2004 wild horse research and field activities

    USGS Publications Warehouse

    Ransom, Jason; Singer, Francis J.; Zeigenfuss, Linda

    2005-01-01

    The Bureau of Land Management (BLM) and U.S. Geological Survey-Biological Resources Discipline (USGS/BRD) continued wild horse research in 2004, investigating the strategic research elements of fertility control and population estimation. Fertility control research was focused on the individual-based porcine zonae pellucid (PZP) field trials at the Pryor Mountain Wild Horse Range (WHR), Little Rock Cliffs WHR, and McCullough Peaks Wild Horse Management Area (WHMA). Aerial population estimation research was conducted on a number of western wild horse herds to test different survey techniques as applied to various habitat types and population sizes.

  20. Molecular and Cytogenetic Characterization of Wild Musa Species

    PubMed Central

    ?ížková, Jana; H?ibová, Eva; Christelová, Pavla; Van den Houwe, Ines; Häkkinen, Markku; Roux, Nicolas; Swennen, Rony; Doležel, Jaroslav

    2015-01-01

    The production of bananas is threatened by rapid spreading of various diseases and adverse environmental conditions. The preservation and characterization of banana diversity is essential for the purposes of crop improvement. The world's largest banana germplasm collection maintained at the Bioversity International Transit Centre (ITC) in Belgium is continuously expanded by new accessions of edible cultivars and wild species. Detailed morphological and molecular characterization of the accessions is necessary for efficient management of the collection and utilization of banana diversity. In this work, nuclear DNA content and genomic distribution of 45S and 5S rDNA were examined in 21 diploid accessions recently added to ITC collection, representing both sections of the genus Musa. 2C DNA content in the section Musa ranged from 1.217 to 1.315 pg. Species belonging to section Callimusa had 2C DNA contents ranging from 1.390 to 1.772 pg. While the number of 45S rDNA loci was conserved in the section Musa, it was highly variable in Callimusa species. 5S rRNA gene clusters were found on two to eight chromosomes per diploid cell. The accessions were genotyped using a set of 19 microsatellite markers to establish their relationships with the remaining accessions held at ITC. Genetic diversity done by SSR genotyping platform was extended by phylogenetic analysis of ITS region. ITS sequence data supported the clustering obtained by SSR analysis for most of the accessions. High level of nucleotide diversity and presence of more than two types of ITS sequences in eight wild diploids pointed to their origin by hybridization of different genotypes. This study significantly expands the number of wild Musa species where nuclear genome size and genomic distribution of rDNA loci is known. SSR genotyping identified Musa species that are closely related to the previously characterized accessions and provided data to aid in their classification. Sequence analysis of ITS region provided further information about evolutionary relationships between individual accessions and suggested that some of analyzed accessions were interspecific hybrids and/or backcross progeny. PMID:26252482

  1. Evolutionary relationships among Ascochyta species infecting wild and cultivated hosts in the legume tribes Cicereae and Vicieae

    E-print Network

    Peever, Tobin

    that isolates from cultivated pea (P. sati- vum), lentil (Lens culinaris), faba bean (Vicia faba) and chickpea phylogenetic species infecting pea, lentil, faba bean and chickpea, re- spectively. Ascochyta spp. from wild relatives of pea and chickpea clustered with isolates from related cultivated hosts. Isolates sampled from

  2. Selective defecation and selective foraging: Antiparasite behavior in wild ungulates?

    USGS Publications Warehouse

    Ezenwa, V.O.

    2004-01-01

    Selective defecation and selective foraging are two potential antiparasite behaviors used by grazing ungulates to reduce infection by fecal-oral transmitted parasites. While there is some evidence that domestic species use these strategies, less is known about the occurrence and efficacy of these behaviors in wild ungulates. In this study, I examined whether wild antelope use selective defecation and selective foraging strategies to reduce exposure to gastrointestinal nematode parasites. By quantifying parasite levels in the environment in relation to the defecation patterns of three species, dik-dik (Madoqua kirkii), Grant's gazelle (Gazella granti), and impala (Aepyceros melampus), I found that nematode larval concentrations in pasture were higher in the vicinity of clusters of feces (dung middens) compared to single fecal pellet groups or dung-free areas. In addition, experimental feeding trials in free-ranging dik-dik showed that individuals selectively avoided feeding near concentrations of feces. Given that increased parasite contamination was found in the immediate vicinity of fecal clusters, fecal avoidance could help reduce host consumption of parasites and may therefore be an effective antiparasite behavior for certain species. On the other hand, while the concentration of parasite larvae in the vicinity of middens coupled with host avoidance of these areas during grazing could reduce host contact with parasites, results showing a positive correlation between the number of middens in a habitat and larval abundance at control sites suggest that dung middens might increase and not decrease overall host exposure to parasites. If this is the case, dung midden formation may not be a viable antiparasite strategy.

  3. Effects of economic downturns on mortality of wild African elephants.

    PubMed

    Wittemyer, George

    2011-10-01

    Declines in economic activity and associated changes in human livelihood strategies can increase threats of species overexploitation. This is exemplified by the effects of economic crises, which often drive intensification of subsistence poaching and greater reliance on natural resources. Whereas development theory links natural resource use to social-economic conditions, few empirical studies of the effect of economic downturns on wild animal species have been conducted. I assessed the relations between African elephant (Loxodonta africana) mortality and human-caused wounds in Samburu, Kenya and (1) livestock and maize prices (measures of local economic conditions), (2) change in national and regional gross domestic product (GDP) (measures of macroeconomic conditions), and (3) the normalized difference vegetation index (NDVI) (a correlate of primary productivity). In addition, I analyzed household survey data to determine the attitudes of local people toward protected areas and wild animals in the area. When cattle prices in the pastoralist study region were low, human-caused wounds to and adult mortality of elephants increased. The NDVI was negatively correlated with juvenile mortality, but not correlated with adult mortality. Changes in Kenyan and East Asian (primary market for ivory) GDP did not explain significant variation in mortality. Increased human wounding of elephants and elephant mortality during periods of low livestock prices (local economic downturns) likely reflect an economically driven increase in ivory poaching. Local but not macroeconomic indices explained significant variation in mortality, likely due to the dominance of the subsistence economy in the study area and its political and economic isolation. My results suggest economic metrics can serve as effective indicators of changes in human use of and resulting effects on natural resources. Such information can help focus management approaches (e.g., antipoaching effort or proffering of alternative occupational opportunities) that address variation in local activities that threaten plant and animal populations. PMID:21790785

  4. Heritable circadian period length in a wild bird population

    PubMed Central

    Helm, Barbara; Visser, Marcel E.

    2010-01-01

    Timing is essential, but circadian clocks, which play a crucial role in timekeeping, are almost unaddressed in evolutionary ecology. A key property of circadian clocks is their free-running period length (?), i.e. the time taken for a full cycle under constant conditions. Under laboratory conditions, concordance of ? with the ambient light–dark cycle confers major fitness benefits, but little is known about period length and its implications in natural populations. We therefore studied natural variation of circadian traits in a songbird, the great tit (Parus major), by recording locomotor activity of 98 hand-raised, wild-derived individuals. We found, unexpectedly, that the free-running period of this diurnal species was significantly shorter than 24 h in constant dim light. We furthermore demonstrate, to our knowledge for the first time in a wild vertebrate, ample genetic variation and high heritability (h2 = 0.86 ± 0.24), implying that period length is potentially malleable by micro-evolutionary change. The observed, short period length may be a consequence of sexual selection, as offspring from extra-pair matings had significantly shorter free-running periods than their half-siblings from within-pair matings. These findings position circadian clocks in the ‘real world’ and underscore the value of using chronobiological approaches in evolutionary ecology. Evolutionary ecologists study variation and its fitness consequences, but often have difficulties relating behavioural variation to physiological mechanisms. The findings presented here open the possibility that properties of internal, circadian clocks affect performance in traits that are relevant to fitness and sexual selection. PMID:20534621

  5. Advances in reproductive science for wild carnivore conservation.

    PubMed

    Comizzoli, P; Crosier, A E; Songsasen, N; Gunther, M Szykman; Howard, J G; Wildt, D E

    2009-07-01

    Knowledge about reproduction is critical for predicting the viability of wildlife populations in nature and for managing breeding programmes in captivity. Intensive species-based studies are the priority, because reproductive mechanisms are extraordinarily diverse, even within the same taxonomic family. Carnivores deserve more attention as such species are highly vulnerable to environmental change and human persecution. The present review provides contemporary illustrations of how reproductive science is contributing to understand unique reproductive mechanisms that are both of fundamental and applied interest. In the case of the endangered African wild dog (Lycaon pictus) free-living in South Africa, non-invasive faecal corticosteroid assessments have yielded new insights about the impact of animal relocation and reintroduction on adaptive responses, reproductive fitness and survival. For the maned wolf (Chrysocyon brachyurus), advances have been made in characterizing and comparing reproductive traits in free-ranging vs captive individuals. For the cheetah (Acinonyx jubatus), recent studies have focused on the cryosensitivity of sperm and the ability to develop a field-friendly sperm cryo-method. The by-product has been a large-scale frozen repository of sperm from wild-caught cheetahs useful for infusing new genes into ex situ populations. Finally, rigorous, multi-disciplinary and cross-institutional reproductive studies of the black-footed ferret (Mustela nigripes), including the use of artificial insemination, have contributed to the remarkable recovery and restoration of this species, once on the brink of extinction. In summary, advances in reproductive science are not necessarily related to 'assisted breeding'. However, understanding the unique ways of carnivore reproduction greatly contributes to species management and conservation. PMID:19754535

  6. Measuring Hearing in Wild Beluga Whales.

    PubMed

    Mooney, T Aran; Castellote, Manuel; Quakenbush, Lori; Hobbs, Roderick; Goertz, Caroline; Gaglione, Eric

    2016-01-01

    We measured the hearing abilities of seven wild beluga whales (Delphinapterus leucas) during a collection-and-release experiment in Bristol Bay, AK. Here we summarize the methods and initial data from one animal and discuss the implications of this experiment. Audiograms were collected from 4 to 150 kHz. The animal with the lowest threshold heard best at 80 kHz and demonstrated overall good hearing from 22 to 110 kHz. The robustness of the methodology and data suggest that the auditory evoked potential audiograms can be incorporated into future collection-and-release health assessments. Such methods may provide high-quality results for multiple animals, facilitating population-level audiograms and hearing measures in new species. PMID:26611025

  7. Retinal ganglion cell responses to voltage and current stimulation in wild-type and rd1 mouse retinas

    NASA Astrophysics Data System (ADS)

    Goo, Yong Sook; Ye, Jang Hee; Lee, Seokyoung; Nam, Yoonkey; Ryu, Sang Baek; Kim, Kyung Hwan

    2011-06-01

    Retinal prostheses are being developed to restore vision for those with retinal diseases such as retinitis pigmentosa or age-related macular degeneration. Since neural prostheses depend upon electrical stimulation to control neural activity, optimal stimulation parameters for successful encoding of visual information are one of the most important requirements to enable visual perception. In this paper, we focused on retinal ganglion cell (RGC) responses to different stimulation parameters and compared threshold charge densities in wild-type and rd1 mice. For this purpose, we used in vitro retinal preparations of wild-type and rd1 mice. When the neural network was stimulated with voltage- and current-controlled pulses, RGCs from both wild-type and rd1 mice responded; however the temporal pattern of RGC response is very different. In wild-type RGCs, a single peak within 100 ms appears, while multiple peaks (approximately four peaks) with ~10 Hz rhythm within 400 ms appear in RGCs in the degenerated retina of rd1 mice. We find that an anodic phase-first biphasic voltage-controlled pulse is more efficient for stimulation than a biphasic current-controlled pulse based on lower threshold charge density. The threshold charge densities for activation of RGCs both with voltage- and current-controlled pulses are overall more elevated for the rd1 mouse than the wild-type mouse. Here, we propose the stimulus range for wild-type and rd1 retinas when the optimal modulation of a RGC response is possible.

  8. Prevalence and diversity of Babesia, Hepatozoon, Ehrlichia, and Bartonella in wild and domestic carnivores from Zambia, Africa.

    PubMed

    Williams, Brianna M; Berentsen, Are; Shock, Barbara C; Teixiera, Maria; Dunbar, Michael R; Becker, Matthew S; Yabsley, Michael J

    2014-03-01

    A molecular survey was conducted for several hemoparasites of domestic dogs and three species of wild carnivores from two sites in Zambia. Three Babesia spp. were detected including Babesia felis and Babesia leo in lions (Panthera leo) and a Babesia sp. (similar to Babesia lengau) in spotted hyenas (Crocuta crocuta) and a single lion. All wild dogs (Lycaon pictus) and domestic dogs were negative for Babesia. High prevalences for Hepatozoon were noted in all three wild carnivores (38-61%) and in domestic dogs (13%). Significantly higher prevalences were noted in hyenas and wild dogs compared with domestic dogs and lions. All carnivores were PCR negative for Ehrlichia canis, Ehrlichia ewingii, and Bartonella spp. Overall, high prevalences and diversity of Babesia and Hepatozoon were noted in wild carnivores from Zambia. This study is the first molecular characterization of Babesia from any hyena species and is the first report of a Babesia sp. closely related to B. lengau, a parasite previously only reported from cheetahs (Acinonyx jubatus), in lions and hyenas. Although usually benign in wild carnivores, these hemoparasites can be pathogenic under certain circumstances. Importantly, data on vectors for these parasites are lacking, so studies are needed to identify vectors as well as determine transmission routes, infection dynamics, and host specificity of these hemoparasites in wildlife in Africa and also the risk of transmission between domestic animals and wildlife. PMID:24363181

  9. Has Wild Poliovirus Been Eliminated from Nigeria?

    PubMed Central

    Famulare, Michael

    2015-01-01

    Wild poliovirus type 3 (WPV3) has not been seen anywhere since the last case of WPV3-associated paralysis in Nigeria in November 2012. At the time of writing, the most recent case of wild poliovirus type 1 (WPV1) in Nigeria occurred in July 2014, and WPV1 has not been seen in Africa since a case in Somalia in August 2014. No cases associated with circulating vaccine-derived type 2 poliovirus (cVDPV2) have been detected in Nigeria since November 2014. Has WPV1 been eliminated from Africa? Has WPV3 been eradicated globally? Has Nigeria interrupted cVDPV2 transmission? These questions are difficult because polio surveillance is based on paralysis and paralysis only occurs in a small fraction of infections. This report provides estimates for the probabilities of poliovirus elimination in Nigeria given available data as of March 31, 2015. It is based on a model of disease transmission that is built from historical polio incidence rates and is designed to represent the uncertainties in transmission dynamics and poliovirus detection that are fundamental to interpreting long time periods without cases. The model estimates that, as of March 31, 2015, the probability of WPV1 elimination in Nigeria is 84%, and that if WPV1 has not been eliminated, a new case will be detected with 99% probability by the end of 2015. The probability of WPV3 elimination (and thus global eradication) is > 99%. However, it is unlikely that the ongoing transmission of cVDPV2 has been interrupted; the probability of cVDPV2 elimination rises to 83% if no new cases are detected by April 2016. PMID:26317401

  10. Demographic variables for wild Asian elephants using longitudinal observations.

    PubMed

    de Silva, Shermin; Webber, C Elizabeth; Weerathunga, U S; Pushpakumara, T V; Weerakoon, Devaka K; Wittemyer, George

    2013-01-01

    Detailed demographic data on wild Asian elephants have been difficult to collect due to habitat characteristics of much of the species' remaining range. Such data, however, are critical for understanding and modeling population processes in this endangered species. We present data from six years of an ongoing study of Asian elephants (Elephas maximus) in Uda Walawe National Park, Sri Lanka. This relatively undisturbed population numbering over one thousand elephants is individually monitored, providing cohort-based information on mortality and reproduction. Reproduction was seasonal, such that most births occurred during the long inter-monsoon dry season and peaked in May. During the study, the average age at first reproduction was 13.4 years and the 50(th) percentile inter-birth interval was approximately 6 years. Birth sex ratios did not deviate significantly from parity. Fecundity was relatively stable throughout the observed reproductive life of an individual (ages 11-60), averaging between 0.13-0.17 female offspring per individual per year. Mortalities and injuries based on carcasses and disappearances showed that males were significantly more likely than females to be killed or injured through anthropogenic activity. Overall, however, most observed injuries did not appear to be fatal. This population exhibits higher fecundity and density relative to published estimates on other Asian elephant populations, possibly enhanced by present range constriction. Understanding the factors responsible for these demographic dynamics can shed insight on the future needs of this elephant population, with probable parallels to other populations in similar settings. PMID:24376581

  11. Demographic Variables for Wild Asian Elephants Using Longitudinal Observations

    PubMed Central

    de Silva, Shermin; Webber, C. Elizabeth; Weerathunga, U. S.; Pushpakumara, T. V.; Weerakoon, Devaka K.; Wittemyer, George

    2013-01-01

    Detailed demographic data on wild Asian elephants have been difficult to collect due to habitat characteristics of much of the species’ remaining range. Such data, however, are critical for understanding and modeling population processes in this endangered species. We present data from six years of an ongoing study of Asian elephants (Elephas maximus) in Uda Walawe National Park, Sri Lanka. This relatively undisturbed population numbering over one thousand elephants is individually monitored, providing cohort-based information on mortality and reproduction. Reproduction was seasonal, such that most births occurred during the long inter-monsoon dry season and peaked in May. During the study, the average age at first reproduction was 13.4 years and the 50th percentile inter-birth interval was approximately 6 years. Birth sex ratios did not deviate significantly from parity. Fecundity was relatively stable throughout the observed reproductive life of an individual (ages 11–60), averaging between 0.13–0.17 female offspring per individual per year. Mortalities and injuries based on carcasses and disappearances showed that males were significantly more likely than females to be killed or injured through anthropogenic activity. Overall, however, most observed injuries did not appear to be fatal. This population exhibits higher fecundity and density relative to published estimates on other Asian elephant populations, possibly enhanced by present range constriction. Understanding the factors responsible for these demographic dynamics can shed insight on the future needs of this elephant population, with probable parallels to other populations in similar settings. PMID:24376581

  12. Quantitative trait locus and haplotype analyses of wild and crop-mimic traits in U.S. weedy rice.

    PubMed

    Mispan, Muhamad S; Zhang, Lihua; Feng, Jiuhuan; Gu, Xing-You

    2013-06-01

    Conspecific weeds retained characteristics from wild ancestors and also developed crop mimicries for adaptation and competitiveness. This research was conducted to identify quantitative trait loci (QTL) associated with the wild and crop-mimic traits and to determine haplotype variants for QTL-rich regions in U.S. weedy rice. An F2 population from the cross between a cultivated (EM93-1) and a U.S. weedy (US1) rice line was evaluated for six wild and eight crop-mimic traits in a greenhouse to identify the QTL. A core collection of 27 U.S. weedy red rice lines and 14 AA-genome wild rice lines were determined for the haplotype variants. A total of 49 QTL were identified, with 45 collocated as clusters on 14 genomic segments. The number of haplotypes across the 14 segments was lower in the weedy (6.1 ± 2.4) than in the wild (7.5 ± 1.8) rice sample. Both samples shared ~50% haplotypes (wild-like). The EM93-1-like haplotypes accounted for a greater proportion (30 ± 26%) of the haplotypes in the weedy than in the wild (7 ± 10%) rice. Based on haplotype patterns for the 14 QTL cluster regions, 26 of the 28 red rice lines were clustered into two groups corresponding to the black-hull awned and straw-hull awnless morphological types, respectively. The QTL analysis demonstrated that conspecific weed-crop differentiation involved many genomic segments with multiple loci regulating natural variation for adaptation and competitiveness. The haplotype analysis revealed that U.S. weedy rice retained large blocks of linkage disequilibrium for the multiple loci from the wild relatives and also incorporated haplotypes from cultivars. PMID:23604075

  13. Gastrointestinal microbiota of wild and inbred individuals of two house mouse subspecies assessed using high-throughput parallel pyrosequencing.

    PubMed

    Kreisinger, Jakub; Cížková, Dagmar; Vohánka, Jaroslav; Piálek, Jaroslav

    2014-10-01

    The effects of gastrointestinal tract microbiota (GTM) on host physiology and health have been the subject of considerable interest in recent years. While a variety of captive bred species have been used in experiments, the extent to which GTM of captive and/or inbred individuals resembles natural composition and variation in wild populations is poorly understood. Using 454 pyrosequencing, we performed 16S rDNA GTM barcoding for 30 wild house mice (Mus musculus) and wild-derived inbred strain mice belonging to two subspecies (M. m. musculus and M. m. domesticus). Sequenced individuals were selected according to a 2 × 2 experimental design: wild (14) vs. inbred origin (16) and M. m. musculus (15) vs. M. m. domesticus (15). We compared alpha diversity (i.e. number of operational taxonomic units - OTUs), beta diversity (i.e. interindividual variability) and microbiota composition across the four groups. We found no difference between M. m. musculus and M. m. domesticus subspecies, suggesting low effect of genetic differentiation between these two subspecies on GTM structure. Both inbred and wild populations showed the same level of microbial alpha and beta diversity; however, we found strong differentiation in microbiota composition between wild and inbred populations. Relative abundance of ~ 16% of OTUs differed significantly between wild and inbred individuals. As laboratory mice represent the most abundant model for studying the effects of gut microbiota on host metabolism, immunity and neurology, we suggest that the distinctness of laboratory-kept mouse microbiota, which differs from wild mouse microbiota, needs to be considered in future biomedical research. PMID:25204516

  14. Molecular Investigation on the Presence of Hepatitis E Virus (HEV) in Wild Game in North-Western Italy.

    PubMed

    Serracca, Laura; Battistini, Roberta; Rossini, Irene; Mignone, Walter; Peletto, Simone; Boin, Claudia; Pistone, Giancarlo; Ercolini, Riccardo; Ercolini, Carlo

    2015-09-01

    Meat products from HEV-infected reservoir animal species are capable of transmitting HEV to humans and represent a public health concern. Human HEV cases have been linked to the consumption of raw or undercooked pig liver sausages, pork, and game meats, such as wild boars and deer worldwide. Direct exposure to swine or wild game species might also represent a source of HEV transmission especially for veterinarians, hunters, or butchers. A limited amount of data is available on HEV prevalence in wild boars in Italy and no data are available for other wild game species intended for human consumption. In this study, the circulation of HEV in four different animal species hunted in north-western Italy was evaluated to gain insight into the infection levels and the genetic diversity of the virus in such animal populations. Liver samples of 372 wild boars, 30 roe deer, 47 European hares and 38 coypus were analyzed for HEV RNA by real-time RT-PCR; positive samples were then sequenced and submitted to phylogenetic analysis. HEV RNA was detected in the livers of 7/372 (1.9%) wild boars tested, while no sample was positive for roe deer, European hare, and coypu. Phylogenetic analysis showed that wild boar HEV sequences belonged to HEV subtypes 3e, 3c, and 3f. Our results indicate that HEV is circulating only in wild boar among the considered game species in north-western Italy and suggest a potential zoonotic risk related to handling and/or consumption of raw or undercooked meat and products made of the liver from this species. PMID:26006251

  15. Contemporary Genetic Structure, Phylogeography and Past Demographic Processes of Wild Boar Sus scrofa Population in Central and Eastern Europe

    PubMed Central

    Kusza, Szilvia; Podgórski, Tomasz; Scandura, Massimo; Borowik, Tomasz; Jávor, András; Sidorovich, Vadim E.; Bunevich, Aleksei N.; Kolesnikov, Mikhail; J?drzejewska, Bogumi?a

    2014-01-01

    The wild boar (Sus scrofa) is one of the most widely distributed mammals in Europe. Its demography was affected by various events in the past and today populations are increasing throughout Europe. We examined genetic diversity, structure and population dynamics of wild boar in Central and Eastern Europe. MtDNA control region (664 bp) was sequenced in 254 wild boar from six countries (Poland, Hungary, Belarus, Ukraine, Moldova and the European part of Russia). We detected 16 haplotypes, all known from previous studies in Europe; 14 of them belonged to European 1 (E1) clade, including 13 haplotypes from E1-C and one from E1-A lineages. Two haplotypes belonged respectively to the East Asian and the Near Eastern clade. Both haplotypes were found in Russia and most probably originated from the documented translocations of wild boar. The studied populations showed moderate haplotype (0.714±0.023) and low nucleotide diversity (0.003±0.002). SAMOVA grouped the genetic structuring of Central and Eastern European wild boar into three subpopulations, comprising of: (1) north-eastern Belarus and the European part of Russia, (2) Poland, Ukraine, Moldova and most of Belarus, and (3) Hungary. The multimodal mismatch distribution, Fu's Fs index, Bayesian skyline plot and the high occurrence of shared haplotypes among populations did not suggest strong demographic fluctuations in wild boar numbers in the Holocene and pre-Holocene times. This study showed relatively weak genetic diversity and structure in Central and Eastern European wild boar populations and underlined gaps in our knowledge on the role of southern refugia and demographic processes shaping genetic diversity of wild boar in this part of Europe. PMID:24622149

  16. Traditional knowledge of wild edible plants used in Palestine (Northern West Bank): A comparative study

    PubMed Central

    Ali-Shtayeh, Mohammed S; Jamous, Rana M; Al-Shafie', Jehan H; Elgharabah, Wafa' A; Kherfan, Fatemah A; Qarariah, Kifayeh H; Khdair, Isra' S; Soos, Israa M; Musleh, Aseel A; Isa, Buthainah A; Herzallah, Hanan M; Khlaif, Rasha B; Aiash, Samiah M; Swaiti, Ghadah M; Abuzahra, Muna A; Haj-Ali, Maha M; Saifi, Nehaya A; Azem, Hebah K; Nasrallah, Hanadi A

    2008-01-01

    Background A comparative food ethnobotanical study was carried out in fifteen local communities distributed in five districts in the Palestinian Authority, PA (northern West Bank), six of which were located in Nablus, two in Jenin, two in Salfit, three in Qalqilia, and two in Tulkarm. These are among the areas in the PA whose rural inhabitants primarily subsisted on agriculture and therefore still preserve the traditional knowledge on wild edible plants. Methods Data on the use of wild edible plants were collected for one-year period, through informed consent semi-structured interviews with 190 local informants. A semi-quantitative approach was used to document use diversity, and relative importance of each species. Results and discussion The study recorded 100 wild edible plant species, seventy six of which were mentioned by three informants and above and were distributed across 70 genera and 26 families. The most significant species include Majorana syriaca, Foeniculum vulgare, Malvasylvestris, Salvia fruticosa, Cyclamen persicum, Micromeria fruticosa, Arum palaestinum, Trigonella foenum-graecum, Gundelia tournefortii, and Matricaria aurea. All the ten species with the highest mean cultural importance values (mCI), were cited in all five areas. Moreover, most were important in every region. A common cultural background may explain these similarities. One taxon (Majoranasyriaca) in particular was found to be among the most quoted species in almost all areas surveyed. CI values, as a measure of traditional botanical knowledge, for edible species in relatively remote and isolated areas (Qalqilia, and Salfit) were generally higher than for the same species in other areas. This can be attributed to the fact that local knowledge of wild edible plants and plant gathering are more spread in remote or isolated areas. Conclusion Gathering, processing and consuming wild edible plants are still practiced in all the studied Palestinian areas. About 26 % (26/100) of the recorded wild botanicals including the most quoted and with highest mCI values, are currently gathered and utilized in all the areas, demonstrating that there are ethnobotanical contact points among the various Palestinian regions. The habit of using wild edible plants is still alive in the PA, but is disappearing. Therefore, the recording, preserving, and infusing of this knowledge to future generations is pressing and fundamental. PMID:18474107

  17. Post-entry blockade of small ruminant lentiviruses by wild ruminants.

    PubMed

    Sanjosé, Leticia; Crespo, Helena; Blatti-Cardinaux, Laure; Glaria, Idoia; Martínez-Carrasco, Carlos; Berriatua, Eduardo; Amorena, Beatriz; De Andrés, Damián; Bertoni, Giuseppe; Reina, Ramses

    2016-01-01

    Small ruminant lentivirus (SRLV) infection causes losses in the small ruminant industry due to reduced animal production and increased replacement rates. Infection of wild ruminants in close contact with infected domestic animals has been proposed to play a role in SRLV epidemiology, but studies are limited and mostly involve hybrids between wild and domestic animals. In this study, SRLV seropositive red deer, roe deer and mouflon were detected through modified ELISA tests, but virus was not successfully amplified using a set of different PCRs. Apparent restriction of SRLV infection in cervids was not related to the presence of neutralizing antibodies. In vitro cultured skin fibroblastic cells from red deer and fallow deer were permissive to the SRLV entry and integration, but produced low quantities of virus. SRLV got rapidly adapted in vitro to blood-derived macrophages and skin fibroblastic cells from red deer but not from fallow deer. Thus, although direct detection of virus was not successfully achieved in vivo, these findings show the potential susceptibility of wild ruminants to SRLV infection in the case of red deer and, on the other hand, an in vivo SRLV restriction in fallow deer. Altogether these results may highlight the importance of surveilling and controlling SRLV infection in domestic as well as in wild ruminants sharing pasture areas, and may provide new natural tools to control SRLV spread in sheep and goats. PMID:26738942

  18. Review of metal accumulation and toxicity in wild mammals. I. Mercury

    SciTech Connect

    Wren, C.D.

    1986-06-01

    Release of Hg compounds into the environment from point sources has largely been curtailed due to the known impacts of Hg on biological systems. Mercury continues to be released into the environment, however, from nonpoint sources such as combustion of fossil fuels and smelting operations. While the accumulation and toxicity of Hg in aquatic biota, domestic animals, and humans is well documented, relatively little is understood about these processes in wild terrestrial mammals. The purpose of this paper is to review the available literature on Hg levels and toxicity in wild mammals (excluding marine mammals). It is clear that Hg levels are biomagnified within terrestrial food chains, where carnivores greater than omnivores greater than herbivores. Among carnivorous species, Hg levels are generally highest in fish-eating animals. There is usually a high degree of correlation of Hg levels between different animal tissues. The age and sex of an animal appear to influence observed Hg levels, but field data are conflicting for both factors. Tissue Hg levels are affected by location, with significant differences attributable to both local contamination and natural background variability. Experimental studies have shown many mammal species to sensitive to Hg intoxication, but documented incidents of Hg poisoning in wild mammals are rare. Such rarity may be more a function of our inability to observe and demonstrate Hg poisoning in wild populations, rather than an absence of the disease. 78 references.

  19. Isolation and characterization of a novel Rhabdovirus from a wild boar (Sus scrofa) in Japan.

    PubMed

    Sakai, Kouji; Hagiwara, Katsuro; Omatsu, Tsutomu; Hamasaki, Chinami; Kuwata, Ryusei; Shimoda, Hiroshi; Suzuki, Kazuo; Endoh, Daiji; Nagata, Noriyo; Nagai, Makoto; Katayama, Yukie; Oba, Mami; Kurane, Ichiro; Saijo, Masayuki; Morikawa, Shigeru; Mizutani, Tetsuya; Maeda, Ken

    2015-09-30

    A novel rhabdovirus was isolated from the serum of a healthy Japanese wild boar (Sus scrofa leucomystax) and identified using the rapid determination system for viral nucleic acid sequences (RDV), next-generation sequencing, and electron microscopy. The virus was tentatively named wild boar rhabdovirus 1 (WBRV1). Phylogenetic analysis of the entire genome sequence indicated that WBRV1 is closely related to Tupaia rhabdovirus (TRV), which was isolated from cultured cells of hepatocellular carcinoma tissue of tree shrew. TRV has not been assigned to any genus of Rhabdoviridae till date. Analysis of the L gene indicated that WBRV1 belongs to the genus Vesiculovirus. These observations suggest that both TRV and WBRV1 belong to a new genus of Rhabdoviridae. Next-generation genome sequencing of WBRV1 revealed 5 open reading frames of 1329, 765, 627, 1629, and 6336 bases in length. The WBRV1 gene sequences are similar to those of other rhabdoviruses. Epizootiological analysis of a population of wild boars in Wakayama prefecture in Japan indicated that 6.5% were positive for the WBRV1 gene and 52% were positive for WBRV1-neutralizing antibodies. Furthermore, such viral neutralizing antibodies were found in domestic pigs in another prefecture. WBRV1 was inoculated intranasally and intraperitoneally into SCID and BALB/c mice and viral RNA was detected in SCID mice, suggesting that WBRV1 can replicate in immunocompromised mice. These results indicate this novel virus is endemic in wild animals and livestock in Japan. PMID:26116524

  20. Global Wild Annual Lens Collection: A Potential Resource for Lentil Genetic Base Broadening and Yield Enhancement

    PubMed Central

    Singh, Mohar; Bisht, Ishwari Singh; Kumar, Sandeep; Dutta, Manoranjan; Bansal, Kailash Chander; Karale, Moreshwar; Sarker, Ashutosh; Amri, Ahmad; Kumar, Shiv; Datta, Swapan Kumar

    2014-01-01

    Crop wild relatives (CWRs) are invaluable gene sources for various traits of interest, yet these potential resources are themselves increasingly threatened by the impact of climate change as well as other anthropogenic and socio-economic factors. The prime goal of our research was to cover all aspects of wild Lens genetic resource management like species characterization, agro-morphological evaluation, diversity assessment, and development of representative sets for its enhanced utilization in lentil base broadening and yield improvement initiatives. We characterized and evaluated extensively, the global wild annual Lens taxa, originating from twenty seven counties under two agro-climatic conditions of India consecutively for three cropping seasons. Results on various qualitative and quantitative characters including two foliar diseases showed wide variations for almost all yield attributing traits including multiple disease resistance in the wild species, L. nigricans and L. ervoides accessions. The core set developed from the entire Lens taxa had maximum representation from Turkey and Syria, indicating rich diversity in accessions originating from these regions. Diversity analysis also indicated wide geographical variations across genepool as was reflected in the core set. Potential use of core set, as an initial starting material, for genetic base broadening of cultivated lentil was also suggested. PMID:25254552

  1. Increased Mycoplasma hyopneumoniae Disease Prevalence in Domestic Hybrids Among Free-Living Wild Boar.

    PubMed

    Goedbloed, Daniel J; van Hooft, Pim; Lutz, Walburga; Megens, Hendrik-Jan; van Wieren, Sip E; Ydenberg, Ron C; Prins, Herbert H T

    2015-12-01

    Wildlife immune genes are subject to natural selection exerted by pathogens. In contrast, domestic immune genes are largely protected from pathogen selection by veterinary care. Introgression of domestic alleles into the wild could lead to increased disease susceptibility, but observations are scarce due to low introgression rates, low disease prevalence and reduced survival of domestic hybrids. Here we report the first observation of a deleterious effect of domestic introgression on disease prevalence in a free-living large mammal. A fraction of 462 randomly sampled free-living European wild boar (Sus scrofa) was genetically identified as recent wild boar-domestic pig hybrids based on 351 SNP data. Analysis of antibody prevalence against the bacterial pathogen Mycoplasma hyopneumoniae (Mhyo) showed an increased Mhyo prevalence in wild-domestic hybrids. We argue that the most likely mechanism explaining the observed association between domestic hybrid status and Mhyo antibody prevalence would be introgression of deleterious domestic alleles. We hypothesise that large-scale use of antibiotics in the swine breeding sector may have played a role in shaping the relatively deleterious properties of domestic swine immune genes and that domestic introgression may also lead to increased wildlife disease susceptibility in the case of other species. PMID:26391376

  2. Canine Length in Wild Male Baboons: Maturation, Aging and Social Dominance Rank

    PubMed Central

    Galbany, Jordi; Tung, Jenny; Altmann, Jeanne; Alberts, Susan C.

    2015-01-01

    Canines represent an essential component of the dentition for any heterodont mammal. In primates, like many other mammals, canines are frequently used as weapons. Hence, tooth size and wear may have significant implications for fighting ability, and consequently for social dominance rank, reproductive success, and fitness. We evaluated sources of variance in canine growth and length in a well-studied wild primate population because of the potential importance of canines for male reproductive success in many primates. Specifically, we measured maxillary canine length in 80 wild male baboons (aged 5.04–20.45 years) from the Amboseli ecosystem in southern Kenya, and examined its relationship with maturation, age, and social dominance rank. In our analysis of maturation, we compared food-enhanced baboons (those that fed part time at a refuse pit associated with a tourist lodge) with wild-feeding males, and found that food-enhanced males achieved long canines earlier than wild-feeding males. Among adult males, canine length decreased with age because of tooth wear. We found some evidence that, after controlling for age, longer canines were associated with higher adult dominance rank (accounting for 9% of the variance in rank), but only among relatively high-ranking males. This result supports the idea that social rank, and thus reproductive success and fitness, may depend in part on fighting ability mediated by canine size. PMID:25950700

  3. Antioxidant capacity of several Iranian, wild and cultivated strains of the button mushroom

    PubMed Central

    Tajalli, Faezeh; Malekzadeh, Khalil; Soltanian, Hadi; Janpoor, Javad; Rezaeian, Sharareh; Pourianfar, Hamid R.

    2015-01-01

    The white button mushroom, Agaricus bisporus, is the most commonly grown mushroom in Iran; however, there is a significant shortage of research on its antioxidant activity and other medicinal properties. The aim of this study was to evaluate antioxidant capacity of the methanolic extracts from four cultivated strains and four Internal Transcribed Spacer (ITS)-identified, Iranian wild isolates of A. bisporus. Evaluations were made for total phenols, flavonoids and anthocyanins, and 2, 2-diphenyl-1-picrylhydrazyl (DPPH) scavenging activity. Overall, results showed that all the wild isolates exhibited significantly lower DPPH-derived EC50, compared to the cultivated strains (p < 0.05). A relatively high relationship was observed between total phenols and flavonoids or anthocyanins (r2 > 0.60). However, these constituents could not statistically differentiate the group of wild samples from the cultivated ones, and there was low correlation with the DPPH-derived EC50s (r2 < 0.40). In conclusion, comparisons showed that wild isolate 4 and cultivated strains A15 and H1 had higher antioxidant capacity than the others (p < 0.05). This result identifies these mushrooms as good candidates for further investigation. PMID:26413059

  4. Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides

    PubMed Central

    Ani Akpinar, Bala; Yuce, Meral; Lucas, Stuart; Vrána, Jan; Burešová, Veronika; Doležel, Jaroslav; Budak, Hikmet

    2015-01-01

    Wild emmer wheat, Triticum turgidum ssp. dicoccoides is the wild relative of Triticum turgidum, the progenitor of durum and bread wheat, and maintains a rich allelic diversity among its wild populations. The lack of adequate genetic and genomic resources, however, restricts its exploitation in wheat improvement. Here, we report next-generation sequencing of the flow-sorted chromosome 5B of T. dicoccoides to shed light into its genome structure, function and organization by exploring the repetitive elements, protein-encoding genes and putative microRNA and tRNA coding sequences. Comparative analyses with its counterparts in modern and wild wheats suggest clues into the B-genome evolution. Syntenic relationships of chromosome 5B with the model grasses can facilitate further efforts for fine-mapping of traits of interest. Mapping of 5B sequences onto the root transcriptomes of two additional T. dicoccoides genotypes, with contrasting drought tolerances, revealed several thousands of single nucleotide polymorphisms, of which 584 shared polymorphisms on 228 transcripts were specific to the drought-tolerant genotype. To our knowledge, this study presents the largest genomics resource currently available for T. dicoccoides, which, we believe, will encourage the exploitation of its genetic and genomic potential for wheat improvement to meet the increasing demand to feed the world. PMID:26084265

  5. Stable Bacillus thuringiensis transgene introgression from Brassica napus to wild mustard B. juncea.

    PubMed

    Cao, Di; Stewart, C Neal; Zheng, Min; Guan, Zhengjun; Tang, Zhi-Xi; Wei, Wei; Ma, Ke-Ping

    2014-10-01

    Transgenic canola (Brassica napus) with a Bacillus thuringiensis cry1Ac gene and a green fluorescent protein (GFP) marker gene was used in hybridization experiments with wild Brassica juncea. Hybrid F1 and successive five backcross generations were obtained. The pod-set frequency on backcrossed B. juncea plants was over 66%, which suggested relatively high crossing compatibility between the hybrids and wild species. The seed setting in BC1 was the least of all generations tested, and then increased at the BC2 generation for which the thousand-seed weight was the highest of all generations. Seed size in backcrossed generations eventually approached that of the wild parent. The plants in all backcrossed generations were consistent with the expected 1:1 segregation ratio of the transgenes. The Bt Cry1Ac protein concentrations at bolting and flowering stages was higher compared to the 4-5-leaf and pod-formation stages. Nonetheless, the Bt toxin in the fifth backcrossing generation (BC5) was sufficient to kill both polyphagous (Helicoverpa armigera) and oligophagous (Plutella xylostella) Lepidoptera. As a consequence, the subsequent generations harboring the transgene from F1 to BC5 could have selection advantage against insect pests. The result is useful in understanding gene flow from transgenic crops and the followed transgene introgression into wild. PMID:25219305

  6. A review of metal accumulation and toxicity in wild mammals. I. Mercury.

    PubMed

    Wren, C D

    1986-06-01

    Release of Hg compounds into the environment from point sources has largely been curtailed due to the known impacts of Hg on biological systems. Mercury continues to be released into the environment, however, from nonpoint sources such as combustion of fossil fuels and smelting operations. While the accumulation and toxicity of Hg in aquatic biota, domestic animals, and humans is well documented, relatively little is understood about these processes in wild terrestrial mammals. The purpose of this paper is to review the available literature on Hg levels and toxicity in wild mammals (excluding marine mammals). It is clear that Hg levels are biomagnified within terrestrial food chains, where carnivores greater than omnivores greater than herbivores. Among carnivorous species, Hg levels are generally highest in fish-eating animals. There is usually a high degree of correlation of Hg levels between different animal tissues. The age and sex of an animal appear to influence observed Hg levels, but field data are conflicting for both factors. Tissue Hg levels are affected by location, with significant differences attributable to both local contamination and natural background variability. Experimental studies have shown many mammal species to sensitive to Hg intoxication, but documented incidents of Hg poisoning in wild mammals are rare. Such rarity may be more a function of our inability to observe and demonstrate Hg poisoning in wild populations, rather than an absence of the disease. PMID:3519207

  7. Canine length in wild male baboons: maturation, aging and social dominance rank.

    PubMed

    Galbany, Jordi; Tung, Jenny; Altmann, Jeanne; Alberts, Susan C

    2015-01-01

    Canines represent an essential component of the dentition for any heterodont mammal. In primates, like many other mammals, canines are frequently used as weapons. Hence, tooth size and wear may have significant implications for fighting ability, and consequently for social dominance rank, reproductive success, and fitness. We evaluated sources of variance in canine growth and length in a well-studied wild primate population because of the potential importance of canines for male reproductive success in many primates. Specifically, we measured maxillary canine length in 80 wild male baboons (aged 5.04-20.45 years) from the Amboseli ecosystem in southern Kenya, and examined its relationship with maturation, age, and social dominance rank. In our analysis of maturation, we compared food-enhanced baboons (those that fed part time at a refuse pit associated with a tourist lodge) with wild-feeding males, and found that food-enhanced males achieved long canines earlier than wild-feeding males. Among adult males, canine length decreased with age because of tooth wear. We found some evidence that, after controlling for age, longer canines were associated with higher adult dominance rank (accounting for 9% of the variance in rank), but only among relatively high-ranking males. This result supports the idea that social rank, and thus reproductive success and fitness, may depend in part on fighting ability mediated by canine size. PMID:25950700

  8. POLICY OPTIONS TO REVERSE THE DECLINE OF WILD PACIFIC SALMON

    EPA Science Inventory

    The primary goal of the Salmon 2100 Project was to identify practical options that have a high probability of maintaining biologically significant, sustainable populations of wild salmon in the Pacific Northwest and California. Wild salmon recovery efforts in western North Americ...

  9. RESEARCH ARTICLE Coming of Age: Steroid Hormones of Wild Immature

    E-print Network

    Alberts, Susan C

    RESEARCH ARTICLE Coming of Age: Steroid Hormones of Wild Immature Baboons (Papio cynocephalus populations. In the present study we present steroid profiles for a wild population of baboons (Papio was character- ized by high and declining levels of fGC and fT, whereas steroid concentrations were low during

  10. Non-Invasive Genetic Monitoring of Wild Central Chimpanzees

    E-print Network

    capture-recapture, we estimate that 283 chimpanzees (range: 208­316) inhabited the research area betweenNon-Invasive Genetic Monitoring of Wild Central Chimpanzees Mimi Arandjelovic*, Josephine Head opportunistically collected wild chimpanzee faecal samples for genetic capture- recapture analyses over a four

  11. Recent Developments in the Study of Wild Chimpanzee Behavior

    E-print Network

    ARTICLES Recent Developments in the Study of Wild Chimpanzee Behavior JOHN C. MITANI, DAVID P of research, one might think that we have learned ev- erything about the behavior of these apes in nature. But this is not the case. In fact, we are entering a new and extremely exciting era in the study of wild chimpanzee

  12. Hybridization barriers between diploid Solanum tuberosum and wild Solanum raphanifolium

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Wild potato germplasm represents a unique, diverse and accessible resource for disease and pest resistance, along with useful agronomic traits that may be introgressed into the cultivated potato (Solanum tuberosum L.). Hybridization of diploid wild Solanum species with haploids (2x) of cultivated po...

  13. NECTAR COMPOSITION OF WILD PERENNIAL GLYCINE (SOYBEAN) SPECIES

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The genus Glycine contains the cultivated annual soybean G. max, the wild annual, G. soja, and about 21 wild perennial Glycine species. The perennials are largely indigenous to Australia, but are found in Papua New Guinea, Timor, Philippines, Japan and Taiwan. Outcrossing rates in the cultivated s...

  14. Research article Mortality rates of honey bees in the wild

    E-print Network

    Dukas, Reuven

    Research article Mortality rates of honey bees in the wild R. Dukas Animal Behaviour Group of animals including social insects. It is not clear, however, whether honey bees in the wild live long enough to exhibit senescent decline. I tested for the effects of senescence on honey bees foraging

  15. Deep Learning Face Attributes in the Wild , Ping Luo1

    E-print Network

    Wang, Xiaogang

    Deep Learning Face Attributes in the Wild Ziwei Liu1 , Ping Luo1 , Xiaogang Wang2 , Xiaoou Tang1 1}@ee.cuhk.edu.hk Abstract Predicting face attributes from web images is chal- lenging due to background clutters and face variations. A novel deep learning framework is proposed for face attribute prediction in the wild

  16. Variation in personality and fitness in wild female baboons

    E-print Network

    Seyfarth, Robert

    Variation in personality and fitness in wild female baboons Robert M. Seyfartha,1 , Joan B. Silkb exploratory principal component analysis to seven behaviors among 45 wild fe- male baboons over 7 y, and that this variation is associated with fitness (e.g., refs. 1­5). Among baboons, females who es- tablish close

  17. Paternal kin discrimination in wild baboons Susan C. Alberts

    E-print Network

    Alberts, Susan C

    Paternal kin discrimination in wild baboons Susan C. Alberts Department of Zoology, Duke University. Here I report that among wild baboons, Papio cynocephalus, paternal siblings exhibited lower levels untested in large mammals. For baboons, as for other animals, two possible mechan- isms of paternal kin

  18. POLICY CONUNDRUM: RESTORING WILD SALMON TO THE PACIFIC NORTHWEST

    EPA Science Inventory

    Across the Pacific Northwest region of North America, many runs of wild (in contrast to hatchery-bred) salmon have declined and some have been extirpated. Restoring wild salmon runs to the Pacific Northwest is technically challenging, politically nasty, socially divisive, and ...

  19. Correlates of territorial boundary patrol behaviour in wild chimpanzees

    E-print Network

    Correlates of territorial boundary patrol behaviour in wild chimpanzees JOHN C. MITANI* & DAVID P aspect of wild chimpanzee, Pan troglodytes, behav- iour. Although patrolling has been frequently observed variation in the frequency of patrolling by chimpanzees at Ngogo, Kibale National Park, Uganda. We examined

  20. Bovine tuberculosis in a wild boar (Sus scrofa) in Poland.

    PubMed

    Krajewska, Monika; Lipiec, Marek; Zabost, Anna; Augustynowicz-Kope?, Ewa; Szulowski, Krzysztof

    2014-10-01

    Poland is officially tuberculosis free and bovine tuberculosis (BTB) cases are rarely found except in bovids. We found BTB in a wild boar (Sus scrofa) in the Bieszczady Mountains, southeastern Poland. Studies suggest possible transmission of infection between free-living European bison (Bison bonasus caucasicus) and wild boar in this area. PMID:25075538

  1. Epizootics of wild fish induced by farm fish Martin Krkosek*

    E-print Network

    Lewis, Mark

    Epizootics of wild fish induced by farm fish Martin Krkosek* , Mark A. Lewis*, Alexandra Morton , L driven aquaculture growth by 10% annually over the last decade. The association of fish farms of the spread and impact of farm-origin parasites on the survival of wild fish populations. We mathematically

  2. 50 CFR 16.11 - Importation of live wild mammals.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ...2012-10-01 false Importation of live wild mammals. 16.11 Section 16.11 Wildlife... § 16.11 Importation of live wild mammals. (a) The importation, transportation...transportation, and possession of such mammals under the terms and conditions set...

  3. 50 CFR 16.11 - Importation of live wild mammals.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ...2010-10-01 false Importation of live wild mammals. 16.11 Section 16.11 Wildlife... § 16.11 Importation of live wild mammals. (a) The importation, transportation...transportation, and possession of such mammals under the terms and conditions set...

  4. 50 CFR 16.11 - Importation of live wild mammals.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ...2011-10-01 false Importation of live wild mammals. 16.11 Section 16.11 Wildlife... § 16.11 Importation of live wild mammals. (a) The importation, transportation...transportation, and possession of such mammals under the terms and conditions set...

  5. 50 CFR 16.11 - Importation of live wild mammals.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ...2013-10-01 false Importation of live wild mammals. 16.11 Section 16.11 Wildlife... § 16.11 Importation of live wild mammals. (a) The importation, transportation...transportation, and possession of such mammals under the terms and conditions set...

  6. 50 CFR 16.11 - Importation of live wild mammals.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ...2014-10-01 false Importation of live wild mammals. 16.11 Section 16.11 Wildlife... § 16.11 Importation of live wild mammals. (a) The importation, transportation...transportation, and possession of such mammals under the terms and conditions set...

  7. 50 CFR 16.11 - Importation of live wild mammals.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 1 2010-10-01 2010-10-01 false Importation of live wild mammals. 16.11... PLANTS INJURIOUS WILDLIFE Importation or Shipment of Injurious Wildlife § 16.11 Importation of live wild mammals. (a) The importation, transportation, or acquisition is prohibited of live specimens of: (1)...

  8. 50 CFR 16.11 - Importation of live wild mammals.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 1 2011-10-01 2011-10-01 false Importation of live wild mammals. 16.11... PLANTS INJURIOUS WILDLIFE Importation or Shipment of Injurious Wildlife § 16.11 Importation of live wild mammals. (a) The importation, transportation, or acquisition is prohibited of live specimens of: (1)...

  9. Cytauxzoonosis: A tick-transmitted parasite of domestic and wild

    E-print Network

    Gray, Matthew

    · Affects wild & domestic felines · Serious illness, often fatal southeastern US · Transmitted by ticks #12­4/25/2009 ­1 Cytauxzoonosis: A tick-transmitted parasite of domestic and wild cats (Felis catus ) Bobcats (Lynx rufus) Transmission: Ticks Dermacentor variabilis (American Dog Tick

  10. NECTAR COMPOSITION OF WILD PERENNIAL GLYCINE (SOYBEAN) SPECIES

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The genus Glycine contains the cultivated annual soybean G. max, the wild annual soybean G. soja, and about 21 wild perennial Glycine species. The perennials are largely indigenous to Australia, but are found in Papua New Guinea, Timor, Philippines, Japan and Taiwan. Outcrossing by insects occurs ...

  11. Annual Report for 2003 Wild Horse Research and Field Activities

    USGS Publications Warehouse

    Ransom, Jason; Singer, Francis J.; Zeigenfuss, Linda C.

    2004-01-01

    As stated in the Wild Horse Fertility Control Field Trial Plan, the Bureau of Land Management (BLM) has an immediate need for a safe, effective contraceptive agent to assist in the management of the large number of wild horses on western rangelands. The BLM and the U.S. Geological Survey-Biological Resources Discipline (USGS/BRD) are testing the immunecontraceptive agent Porcine Zonae Pellucida (PZP) in field trials with three free-roaming herds of western wild horses. Extensive research has already been conducted on the safety, efficacy, and duration of the PZP applications in both domestic and feral horses on eastern barrier islands and in some select trials with wild horses in Nevada managed by the BLM. However, significant questions remain concerning the effects of PZP application at the population level in the wild, as well as effects at the individual level on behavior, social structure, and harem dynamics of free-ranging animals. These questions are best answered with field trials on wild horse herds under a tight research protocol. The ultimate goal is to provide the BLM with the protocols and information necessary to being using fertility control to regulate population growth rates in wild horse herds on a broader scale. Fertility control is intended to assist the conventional capture, removal, and adoption process as a means of controlling excess numbers of wild horses and burros, and to greatly reduce the adoption costs and numbers of animals handled. Fertility control is not intended to totally replace the removal and adoption processa?|

  12. Wild Pollinators Enhance Fruit Set of Crops Regardless of

    E-print Network

    Vermont, University of

    Wild Pollinators Enhance Fruit Set of Crops Regardless of Honey Bee Abundance Lucas A. Garibaldi,1,23 Neal Williams,37 Alexandra M. Klein13 The diversity and abundance of wild insect pollinators have by managed pollinators such as honey bees, is unclear. We found universally positive associations of fruit

  13. WILD 502: Multi-state -pg. 1 of 5 WILD 502 -Multi-state models for live recaptures

    E-print Network

    Rotella, Jay J.

    or Markov chain. In a first-order Markov process, an animal's state at time i+1 depends only on its state states between i and i+1. Andrei Markov was a Russian mathematician who was the first to study matricesWILD 502: Multi-state - pg. 1 of 5 WILD 502 - Multi-state models for live recaptures (Closely

  14. Habitat Suitability Model for Bighorn Sheep and Wild Horses in Bighorn Canyon and the Pryor Mountain Wild Horse Range

    E-print Network

    MacDonald, Lee

    1 Habitat Suitability Model for Bighorn Sheep and Wild Horses in Bighorn Canyon and the Pryor a tool that will help managers and other researchers better manage bighorn sheep and wild horses with native bighorn sheep for available forage or available space. Two studies have been conducted that have

  15. Wild Pollinator Web Resources Check out these great web resources available on wild and alternative pollinators below...

    E-print Network

    Lazzaro, Brian

    Wild Pollinator Web Resources Check out these great web resources available on wild and alternative pollinators below... New York State bee information: · Danforth, B.N. and K.N. Magnacca. 2002. Bees of New national resources on native pollinators: · Xerces Society for Invertebrate Conservation, pollinator

  16. Intracultural variation of knowledge about wild plant uses in the Biosphere Reserve Grosses Walsertal (Austria)

    PubMed Central

    2012-01-01

    Background Leading scholars in ethnobiology and ethnomedicine continuously stress the need for moving beyond the bare description of local knowledge and to additionally analyse and theorise about the characteristics and dynamics of human interactions with plants and related local knowledge. Analyses of the variation of local knowledge are thereby perceived as minimal standard. In this study we investigate the distribution and variation of wild plant knowledge in five domains: food, drinks, human medicine, veterinary medicine and customs. We assess relations between the wild plant knowledge of informants and their socio-demographic as well as geographic background. Method Research was conducted in the Biosphere Reserve Grosses Walsertal, Austria. Structured questionnaires were used to inquire wild plant knowledge from 433 informants with varying socio-demographic and geographic background. Children assisted in the data collection. Data was analysed using descriptive statistics and generalized linear models. Results and discussion A majority of respondents is familiar with wild plant uses, however to varying degrees. Knowledge variations depend on the socio-demographic and geographic background of the informants as well as on the domains of knowledge under investigation: women, older informants and homegardeners report more human medicinal applications and applications in drinks than men, younger informants and non-homegardeners; farmers know a greater variety of veterinary medicinal applications than non-farmers; the place of residence relates significantly to food and veterinary uses. Customs are difficult to investigate in standardized matrices. The household-related distribution of work and the general socio-cultural context are especially helpful in order to explain intracultural variation of knowledge in the Grosses Walsertal. Conclusions Research on the intracultural variation of local knowledge exposes cultural characteristics and highlights the cultural embeddedness of local knowledge. The impact of socio-cultural developments on local knowledge may be anticipated from understanding the intracultural variation of knowledge. PMID:22770375

  17. Interspecific social networks promote information transmission in wild songbirds

    PubMed Central

    Farine, Damien R.; Aplin, Lucy M.; Sheldon, Ben C.; Hoppitt, William

    2015-01-01

    Understanding the functional links between social structure and population processes is a central aim of evolutionary ecology. Multiple types of interactions can be represented by networks drawn for the same population, such as kinship, dominance or affiliative networks, but the relative importance of alternative networks in modulating population processes may not be clear. We illustrate this problem, and a solution, by developing a framework for testing the importance of different types of association in facilitating the transmission of information. We apply this framework to experimental data from wild songbirds that form mixed-species flocks, recording the arrival (patch discovery) of individuals to novel foraging sites. We tested whether intraspecific and interspecific social networks predicted the spread of information about novel food sites, and found that both contributed to transmission. The likelihood of acquiring information per unit of connection to knowledgeable individuals increased 22-fold for conspecifics, and 12-fold for heterospecifics. We also found that species varied in how much information they produced, suggesting that some species play a keystone role in winter foraging flocks. More generally, these analyses demonstrate that this method provides a powerful approach, using social networks to quantify the relative transmission rates across different social relationships. PMID:25673683

  18. Use of wild relatives and closely-related species to adapt common bean to climate change

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Common bean (Phaseolus vulgaris L.) is an important legume crop worldwide. However, abiotic and biotic stress limits bean yields less than 600 kg/ha in low-income countries. Current low yields result in food insecurity, while demands for increased yields to match the rate of population growth combin...

  19. Deducing Wild 2 Components with a Statistical Dataset of Olivine in Chondrite Matrix

    NASA Technical Reports Server (NTRS)

    Frank, D. R.; Zolensky, M. E.; Le, L.

    2012-01-01

    Introduction: A preliminary exam of the Wild 2 olivine yielded a major element distribution that is strikingly similar to those for aqueously altered carbonaceous chondrites (CI, CM, and CR) [1], in which FeO-rich olivine is preferentially altered. With evidence lacking for large-scale alteration in Wild 2, the mechanism for this apparent selectivity is poorly understood. We use a statistical approach to explain this distribution in terms of relative contributions from different chondrite forming regions. Samples and Analyses: We have made a particular effort to obtain the best possible analyses of both major and minor elements in Wild 2 olivine and the 5-30 micrometer population in chondrite matrix. Previous studies of chondrite matrix either include larger isolated grains (not found in the Wild 2 collection) or lack minor element abundances. To overcome this gap in the existing data, we have now compiled greater than 10(exp 3) EPMA analyses of matrix olivine in CI, CM, CR, CH, Kakangari, C2-ungrouped, and the least equilibrated CO, CV, LL, and EH chondrites. Also, we are acquiring TEM/EDXS analyses of the Wild 2 olivine with 500s count times, to reduce relative errors of minor elements with respect to those otherwise available. Results: Using our Wild 2 analyses and those from [2], the revised major element distribution is more similar to anhydrous IDPs than previous results, which were based on more limited statistics (see figure below). However, a large frequency peak at Fa(sub 0-1) still persists. All but one of these grains has no detectable Cr, which is dissimilar to the Fa(sub 0-1) found in the CI and CM matrices. In fact, Fa(sub 0-1) with strongly depleted Cr content is a composition that appears to be unique to Kakangari and enstatite (highly reduced) chondrites. We also note the paucity of Fa(sub greater than 58), which would typically indicate crystallization in a more oxidizing environment [3]. We conclude that, relative to the bulk of anhydrous IDPs, Wild 2 may have received a larger contribution from the Kakangari and/or enstatite chondrite forming regions. Alternatively, Wild 2 may have undergone accretion in an anomalously reducing region, marked by nebular condensation of this atypical forsterite. In [4], a similar conclusion was reached with an Fe-XANES study. We will also use similar lines of reasoning, and our previous conclusions in [5], to constrain the relative contributions of silicates that appear to have been radially transported from different ordinary and carbonaceous chondrite forming regions to the Kuiper Belt. In addition, the widespread depletion of Cr in these FeO-rich (Fa(sub greater than 20)) fragments is consistent with mild thermal metamorphism in Wild 2.

  20. 77 FR 4810 - Pesticide Products; Receipt of Applications To Register New Uses

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-01-31

    ...garlic, shallot, green onion, beltsville...welsh onion tops, wild leek, wild onion...and pearl millets, oats, rye, teosinte...sweet), millet, oats, rice, rye, sorghum...triticale, wheat and wild rice, crop group...small fruit, bulb and green onion, tuberous...

  1. Toxoplasma gondii in sympatric wild herbivores and carnivores: epidemiology of infection in the Western Alps

    PubMed Central

    2014-01-01

    Background Toxoplasma gondii is an apicomplexan parasite that is able to infect almost all warm blooded animals. In Europe, the domestic cat is the main definitive host. Worldwide, 6 billion people are infected with this parasite. The goal of our research is to evaluate the prevalence of T. gondii infection in wild animals from a previously unsampled area in Northern Italy where 0.1% of women seroconvert during pregnancy each year. Methods We sampled and tested skeletal muscle and central nervous system tissue of 355 wild animals by PCR (n?=?121 roe deer Capreolus capreolus, n?=?105 wild boar Sus scrofa, n?=?94 red fox Vulpes vulpes, n?=?22 alpine chamois Rupicapra rupicapra, n?=?13 red deer Cervus elaphus). Results The overall prevalence of infection with T. gondii was 10.99% (confidence interval (CI) 95% 8.14%-14.67%). A higher rate of infection was recorded in carnivores and omnivores (red fox 20.21%, CI 95% 13.34%-29.43%; wild boar 16.19%, CI 95% 10.36%-24.41%) compared to ruminants (2.48%, CI 95% 0.85%-7.04% in roe deer; 0.00%, CI 95% 0.00%-22.81% in red deer, and 0.00% alpine chamois (CI 95% 0.00%-14.87%) confirming the importance of tissue cysts in transmitting infection. Conclusions The relatively high prevalence of T. gondii DNA in highly consumed game species (wild boar and roe deer) gives valuable insights into T. gondii epidemiology and may contribute to improve prevention and control of foodborne toxoplasmosis in humans. PMID:24766665

  2. Testing Eurasian wild boar piglets for serum antibodies against Mycobacterium bovis.

    PubMed

    Che' Amat, A; González-Barrio, D; Ortiz, J A; Díez-Delgado, I; Boadella, M; Barasona, J A; Bezos, J; Romero, B; Armenteros, J A; Lyashchenko, K P; Venteo, A; Rueda, P; Gortázar, C

    2015-09-01

    Animal tuberculosis (TB) caused by infection with Mycobacterium bovis and closely related members of the M. tuberculosis complex (MTC), is often reported in the Eurasian wild boar (Sus scrofa). Tests detecting antibodies against MTC antigens are valuable tools for TB monitoring and control in suids. However, only limited knowledge exists on serology test performance in 2-6 month-old piglets. In this age-class, recent infections might cause lower antibody levels and lower test sensitivity. We examined 126 wild boar piglets from a TB-endemic site using 6 antibody detection tests in order to assess test performance. Bacterial culture (n=53) yielded a M. bovis infection prevalence of 33.9%, while serum antibody prevalence estimated by different tests ranged from 19% to 38%, reaching sensitivities between 15.4% and 46.2% for plate ELISAs and between 61.5% and 69.2% for rapid immunochromatographic tests based on dual path platform (DPP) technology. The Cohen kappa coefficient of agreement between DPP WTB (Wildlife TB) assay and culture results was moderate (0.45) and all other serological tests used had poor to fair agreements. This survey revealed the ability of several tests for detecting serum antibodies against the MTC antigens in 2-6 month-old naturally infected wild boar piglets. The best performance was demonstrated for DPP tests. The results confirmed our initial hypothesis of a lower sensitivity of serology for detecting M. bovis-infected piglets, as compared to older wild boar. Certain tests, notably the rapid animal-side tests, can contribute to TB control strategies by enabling the setup of test and cull schemes or improving pre-movement testing. However, sub-optimal test performance in piglets as compared to that in older wild boar should be taken into account. PMID:26051843

  3. Root graviresponsiveness and cellular differentiation in wild-type and a starchless mutant of Arabidopsis thaliana

    NASA Technical Reports Server (NTRS)

    Moore, R.

    1989-01-01

    Primary roots of a starchless mutant of Arabidopsis thaliana L. are strongly graviresponsive despite lacking amyloplasts in their columella cells. The ultrastructures of calyptrogen and peripheral cells in wild-type as compared to mutant seedlings are not significantly different. The largest difference in cellular differentiation in caps of mutant and wild-type roots is the relative volume of plastids in columella cells. Plastids occupy 12.3% of the volume of columella cells in wild-type seedlings, but only 3.69% of columella cells in mutant seedlings. These results indicate that: (1) amyloplasts and starch are not necessary for root graviresponsiveness; (2) the increase in relative volume of plastids that usually accompanies differentiation of columella cells is not necessary for root graviresponsiveness; and (3) the absence of starch and amyloplasts does not affect the structure of calyptrogen (i.e. meristematic) and secretory (i.e. peripheral) cells in root caps. These results are discussed relative to proposed models for root gravitropism.

  4. Relationships of wild and domesticated rices (Oryza AA genome species) based upon whole chloroplast genome sequences

    PubMed Central

    Wambugu, Peterson W.; Brozynska, Marta; Furtado, Agnelo; Waters, Daniel L.; Henry, Robert J.

    2015-01-01

    Rice is the most important crop in the world, acting as the staple food for over half of the world’s population. The evolutionary relationships of cultivated rice and its wild relatives have remained contentious and inconclusive. Here we report on the use of whole chloroplast sequences to elucidate the evolutionary and phylogenetic relationships in the AA genome Oryza species, representing the primary gene pool of rice. This is the first study that has produced a well resolved and strongly supported phylogeny of the AA genome species. The pan tropical distribution of these rice relatives was found to be explained by long distance dispersal within the last million years. The analysis resulted in a clustering pattern that showed strong geographical differentiation. The species were defined in two primary clades with a South American/African clade with two species, O glumaepatula and O longistaminata, distinguished from all other species. The largest clade was comprised of an Australian clade including newly identified taxa and the African and Asian clades. This refined knowledge of the relationships between cultivated rice and the related wild species provides a strong foundation for more targeted use of wild genetic resources in rice improvement and efforts to ensure their conservation. PMID:26355750

  5. Wild food plants used by the Tibetans of Gongba Valley (Zhouqu county, Gansu, China)

    PubMed Central

    2014-01-01

    Background The ethnobotany of Tibetans is a seriously under-studied topic. The aim of the study was to investigate knowledge and use of wild food plants in a valley inhabited by Tibetans in the Gannan Tibetan Autonomous Region. Methods The field research was carried out in a wooded mountain valley in 9 neighbouring villages the Zhouqu (Brugchu) county, and comprised 17 interviews with single informants and 14 group interviews, involving 122 people altogether. Results We recorded the use of 81 species of vascular plants from 41 families. Fruits formed the largest category, with 42 species, larger than the wild greens category, with 36 species. We also recorded the culinary use of 5 species of edible flowers, 7 species with underground edible organs and 5 taxa of fungi. On average, 16.2 edible taxa were listed per interview (median – 16). Green vegetables formed the largest category of wild foods (mean – 8.7 species, median – 9 species), but fruits were listed nearly as frequently (mean – 6.9, median – 6). Other categories were rarely mentioned: flowers (mean – 0.2, median – 0), underground edible parts (mean – 0.3, median – 0) and mushrooms (mean – 1.5, – median 1). Wild vegetables are usually boiled and/or fried and served as side-dishes (cai). They are often lacto-fermented. Wild fruits are mainly collected by children and eaten raw, they are not stored for further use. The most widely used wild vegetables are: Eleuterococcus spp., Pteridium aquilinum, Helwingia japonica, Aralia chinensis, Allium victorialis, Pteridium aquilinum, Ixeris chinensis, Thlaspi arvense and Chenopodium album. The culinary use of Caltha palustris as a green vegetable is very interesting. In its raw state, marsh marigold is a toxic plant, due to the presence of protoanemonin. In this area it is dried or lactofermented before use. The most commonly eaten fruits are: Pyrus xerophila, Prunus salicina, Berchemia sinica, Rubus spp. and Eleagnus umbellata. Conclusions The number of wild taxa eaten in the studied valley is relatively large compared to most studies from around the world. However, compared to the northern slope of the Qinling, in Shaanxi, the list is considerably shorter, in spite of the similar methodology applied and similar research effort involved. PMID:24502461

  6. Physical, Chemical, and Mineralogical Properties of Comet 81P/Wild 2 Particles Collected by Stardust

    SciTech Connect

    Flynn, G.

    2008-01-01

    NASA's Stardust spacecraft collected dust from the coma of Comet 81P/Wild 2 by impact into aerogel capture cells or into Al-foils. The first direct, laboratory measurement of the physical, chemical, and mineralogical properties of cometary dust grains ranging from <10-15 to ?10-4 g were made on this dust. Deposition of material along the entry tracks in aerogel and the presence of compound craters in the Al-foils both indicate that many of the Wild 2 particles in the size range sampled by Stardust are weakly bound aggregates of a diverse range of minerals. Mineralogical characterization of fragments extracted from tracks indicates that most tracks were dominated by olivine, low-Ca pyroxene, or Fe-sulfides, although one track was dominated by refractory minerals similar to Ca-Al inclusions in primitive meteorites. Minor mineral phases, including Cu-Fe-sulfide, Fe-Zn-sulfide, carbonate and metal oxides, were found along some tracks. The high degree of variability of the element/Fe ratios for S, Ca, Ti, Cr, Mn, Ni, Cu, Zn, and Ga among the 23 tracks from aerogel capture cells analyzed during Stardust Preliminary Examination is consistent with the mineralogical variability. This indicates Wild 2 particles have widely varying compositions at the largest size analyzed (>10 ?m). Because Stardust collected particles from several jets, sampling material from different regions of the interior of Wild 2, these particles are expected to be representative of the non-volatile component of the comet over the size range sampled. Thus, the stream of particles associated with Comet Wild 2 contains individual grains of diverse elemental and mineralogical compositions, some rich in Fe and S, some in Mg, and others in Ca and Al. The mean refractory element abundance pattern in the Wild 2 particles that were examined is consistent with the CI meteorite pattern for Mg, Si, Cr, Fe, and Ni to 35%, and for Ca, Ti and Mn to 60%, but S/Si and Fe/Si both show a statistically significant depletion from the CI values and the moderately volatile elements Cu, Zn, Ga are enriched relative to CI. This elemental abundance pattern is similar to that in anhydrous, porous interplanetary dust particles (IDPs), suggesting that, if Wild 2 dust preserves the original composition of the Solar Nebula, the anhydrous, porous IDPs, not the CI meteorites, may best reflect the Solar Nebula abundances. This might be tested by elemental composition measurements on cometary meteors.

  7. Critical Swimming Speeds of Wild Bull Trout

    USGS Publications Warehouse

    Mesa, M.G.; Weiland, L.K.; Zydlewski, G.B.

    2004-01-01

    We estimated the critical swimming speeds (Ucrit) of wild bull trout at 6??, 11??, and 15??C in laboratory experiments. At 11??C, 5 fish ranging from 11 to 19 cm in length had a mean Ucrit of 48.24 cm/s or 3.22 body lengths per second (BL/s). Also at 11??C , 6 fish from 32 to 42 cm had a mean Ucrit of 73.99 cm/s or 2.05 BL/s. At 15??C, 5 fish from 14 to 23 cm had a mean Ucrit of 54.66 cm/s or 2.88 BL/s. No fish successfully swam at 6??C. Swim speed was significantly influenced by fish length. Many bull trout performed poorly in our enclosed respirometers: of 71 Ucrit tests we attempted, only the 16 described above were successful. Bull trout that refused to swim held station within tunnels by using their pectoral fins as depressors, or they rested and later became impinged against a downstream screen. Several common techniques did not stimulate consistent swimming activity in these fish. Our estimates of U crit for bull trout provide an understanding of their performance capacity and will be useful in modeling efforts aimed at improving fish passage structures. We recommend that fishway or culvert designers concerned with bull trout passage maintain velocities within their structures at or below our estimates of Ucrit, thus taking a conservative approach to ensuring that these fish can ascend migratory obstacles safely.

  8. Wild bearded capuchin monkeys crack nuts dexterously.

    PubMed

    Mangalam, Madhur; Fragaszy, Dorothy M

    2015-05-18

    Dexterous tool use has been crucial in the evolution of hominid percussive technology. According to Newell, "dexterity" is the ability of an organism to make goal-directed corrections in movements to optimize effort. Dexterous movements are smooth and effective and accomplish the same goal with less energy than less dexterous movements. Dexterity develops during the later phases of refining a motor skill as the actor becomes sensitive to the outcome of the preceding movement, or to its modulation. In the present study, we examined how wild bearded capuchin monkeys, Sapajus libidinosus, at Fazenda Boa Vista in Piauí, Brazil, that routinely crack palm nuts using stones by placing them on rock outcrops, boulders, and logs (collectively termed anvils) modulate the kinematic parameters of the strikes while processing a single tucum, Astrocaryum campestre nut. The monkeys cracked the nuts by repeatedly striking them with moderate force (i.e., not exceeding a threshold), rather than by striking them more forcefully once, and modulated the kinematic parameters of the current strike on the basis of the condition of the nut following the preceding strike (i.e., the development of any fracture or crack). Repeatedly striking the nuts with moderate force is energetically more efficient than forcefully striking them once and reduces the likelihood of smashing the kernel. Determining the changing energetic constraints of the task and dynamically optimizing movements using those as criteria are dexterous accomplishments. We discuss the implications of the present findings. PMID:25936553

  9. Effects of radio packages on wild ducks

    USGS Publications Warehouse

    Gilmer, D.S.; Ball, I.J.; Cowardin, L.M.; Riechmann, J.H.

    1974-01-01

    A total of 211 wild, free-flying mallards (Anas platyrhynchos) and wood ducks (Aix sponsa) were equipped with breast-mounted radio packages during the breeding seasons of 1968-72. Known predation loss was 7.6 and 12.0 percent for mallards and wood ducks respectively, 60 percent occurred within 3 weeks of instrumentation. The highest predation rate for mallards was 0.0048 kills per tracking day and 0.0136 for wood ducks. A higher direct recovery rate for instrumented birds (19.5 percent) than noninstrumented birds (8.1 percent) was probably due to the novelty of the transmitter to hunters. Departure patterns and locations of direct recoveries were similar between radio-equipped and normal-banded birds. Among female wood ducks with radios, recovery rates were lower than expected. Hunters indicated that 84 percent of the instrumented ducks recovered were in good or excellent condition. Recaptures of ducks as long as 1 year after being equipped with radio packages indicated that feather wear and skin abrasion were not serious. A high rate for feeding on land by instrumented mallards was probably due to our ability to more easily locate and observe these birds in cover. Preening rates were higher for instrumented ducks. As the birds became adjusted to the package, preening decreased and feeding on water increased. Social and breeding behavior of instrumented ducks did not appear to be adversely affected by the radio package.

  10. Diarylheptanoids from Dioscorea villosa (Wild Yam)†

    PubMed Central

    Dong, Shi-Hui; Nikoli?, Dejan; Simmler, Charlotte; Qiu, Feng; van Breemen, Richard B.; Soejarto, Djaja D.; Pauli, Guido F.; Chen, Shao-Nong

    2013-01-01

    A fractionation methodology aimed at the metabolomic mining of new phytoconstituents for the widely used botanical, wild yam (Dioscorea villosa), makes use of 1D qHNMR and 2D NMR profiles along the preparative fractionation pathway. This quantifiable and structural guidance led to the isolation of 14 diarylheptanoids (1–14), including five new compounds (1–5) with a tetrahydropyrano core skeleton. The structures, including the absolute configurations of both new and previously known diarylheptanoids, were assigned by a combination of HRESIMS, 1D and 2D NMR, 1H iterative full spin analysis (HiFSA), and the Mosher’s ester method. The isolation yields were consistent with yields predicted by qHNMR, which confirms the (semi-)quantifiable capabilities of NMR-based preparative metabolomic mining. The qHNMR-aided approach enabled the identification of new and potentially significant chemical entities from a small fraction of the plant extract and, thereby, facilitated the characterization of the residual complexity of the D. villosa secondary metabolome. LC-MS profiling of different D. villosa accessions further confirmed that the diarylheptanoids represent genuine secondary metabolites, which can serve as a new class of markers for botanical integrity analysis of D. villosa. PMID:23245349

  11. Probable Psittacosis Outbreak Linked to Wild Birds

    PubMed Central

    Moberley, Sarah A.; Hort, Krishna P.; Branley, James M.; Dwyer, Dominic E.; Muscatello, David J.; Correll, Patricia K.; England, John; McAnulty, Jeremy M.

    2005-01-01

    In autumn 2002, an outbreak of probable psittacosis occurred among residents of the Blue Mountains district, Australia. We conducted a case-control study to determine independent risk factors for psittacosis by comparing exposures between hospitalized patients and other residents selected randomly from the telephone directory. Of the 59 case-patients with laboratory results supportive of psittacosis, 48 participated in a case-control study with 310 controls. Independent risk factors were residence in the upper Blue Mountains (odds ratio [OR] = 15.2, 95% confidence interval [CI] 5.6–41.7), age of 50–64 years (OR = 3.9, 95% CI 1.5–10.5), direct contact with wild birds (OR = 7.4, 95% CI 2.5–22), and mowing lawns without a grass catcher (OR = 3.2, 95% CI 1.3–8.0). Protective equipment is recommended for residents in areas frequented by free-ranging birds if contact with birds and their droppings is likely when performing outdoor activities such as lawn mowing. PMID:15757553

  12. 19 CFR 12.28 - Importation of wild mammals and birds in violation of foreign law.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ...DEPARTMENT OF HOMELAND SECURITY; DEPARTMENT OF THE TREASURY SPECIAL CLASSES OF MERCHANDISE Wild Animals, Birds, and Insects § 12.28 Importation of wild mammals and birds in violation of foreign law. No imported wild mammal or...

  13. 7 CFR 1412.62 - Fruit, vegetable, and wild rice acreage reporting violations.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... false Fruit, vegetable, and wild rice acreage reporting violations. 1412...1412.62 Fruit, vegetable, and wild rice acreage reporting violations. (a...report of fruits, vegetables, or wild rice planted on base acreage of a...

  14. 7 CFR 1412.62 - Fruit, vegetable, and wild rice acreage reporting violations.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... false Fruit, vegetable, and wild rice acreage reporting violations. 1412...1412.62 Fruit, vegetable, and wild rice acreage reporting violations. (a...report of fruits, vegetables, or wild rice planted on base acreage of a...

  15. 7 CFR 1412.62 - Fruit, vegetable, and wild rice acreage reporting violations.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... false Fruit, vegetable, and wild rice acreage reporting violations. 1412...1412.62 Fruit, vegetable, and wild rice acreage reporting violations. (a...report of fruits, vegetables, or wild rice planted on base acreage of a...

  16. 7 CFR 1412.62 - Fruit, vegetable, and wild rice acreage reporting violations.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... false Fruit, vegetable, and wild rice acreage reporting violations. 1412...1412.62 Fruit, vegetable, and wild rice acreage reporting violations. (a...report of fruits, vegetables, or wild rice planted on base acreage of a...

  17. 7 CFR 1412.62 - Fruit, vegetable, and wild rice acreage reporting violations.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... false Fruit, vegetable, and wild rice acreage reporting violations. 1412...1412.62 Fruit, vegetable, and wild rice acreage reporting violations. (a...report of fruits, vegetables, or wild rice planted on base acreage of a...

  18. 43 CFR 4710.7 - Maintenance of wild horses and burros on privately controlled lands.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ...2011-10-01 false Maintenance of wild horses and burros on privately controlled...AND CONTROL OF WILD FREE-ROAMING HORSES AND BURROS Management Considerations § 4710.7 Maintenance of wild horses and burros on privately...

  19. 43 CFR 4710.7 - Maintenance of wild horses and burros on privately controlled lands.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ...2013-10-01 false Maintenance of wild horses and burros on privately controlled...AND CONTROL OF WILD FREE-ROAMING HORSES AND BURROS Management Considerations § 4710.7 Maintenance of wild horses and burros on privately...

  20. 43 CFR 4710.7 - Maintenance of wild horses and burros on privately controlled lands.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ...2014-10-01 false Maintenance of wild horses and burros on privately controlled...AND CONTROL OF WILD FREE-ROAMING HORSES AND BURROS Management Considerations § 4710.7 Maintenance of wild horses and burros on privately...

  1. 76 FR 78692 - Notice of Public Meeting: Northeast California Resource Advisory Council Wild Horse and Burro...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-12-19

    ...California Resource Advisory Council Wild Horse and Burro Management Subcommittee AGENCY...California Resource Advisory Council's wild horse and burro management subcommittee will...issues associated with management of wild horses and burros on public lands managed by...

  2. 43 CFR 4750.3-1 - Application for private maintenance of wild horses and burros.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ...Application for private maintenance of wild horses and burros. 4750.3-1 Section...MANAGEMENT, AND CONTROL OF WILD FREE-ROAMING HORSES AND BURROS Private Maintenance § 4750...Application for private maintenance of wild horses and burros. An individual...

  3. 43 CFR 4750.3-1 - Application for private maintenance of wild horses and burros.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ...Application for private maintenance of wild horses and burros. 4750.3-1 Section...MANAGEMENT, AND CONTROL OF WILD FREE-ROAMING HORSES AND BURROS Private Maintenance § 4750...Application for private maintenance of wild horses and burros. An individual...

  4. 43 CFR 4710.7 - Maintenance of wild horses and burros on privately controlled lands.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ...2012-10-01 false Maintenance of wild horses and burros on privately controlled...AND CONTROL OF WILD FREE-ROAMING HORSES AND BURROS Management Considerations § 4710.7 Maintenance of wild horses and burros on privately...

  5. 43 CFR 4750.3-1 - Application for private maintenance of wild horses and burros.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ...Application for private maintenance of wild horses and burros. 4750.3-1 Section...MANAGEMENT, AND CONTROL OF WILD FREE-ROAMING HORSES AND BURROS Private Maintenance § 4750...Application for private maintenance of wild horses and burros. An individual...

  6. 43 CFR 4750.3-1 - Application for private maintenance of wild horses and burros.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ...Application for private maintenance of wild horses and burros. 4750.3-1 Section...MANAGEMENT, AND CONTROL OF WILD FREE-ROAMING HORSES AND BURROS Private Maintenance § 4750...Application for private maintenance of wild horses and burros. An individual...

  7. Comparative Gastric Morphometry of Muong Indigenous and Vietnamese Wild Pigs

    PubMed Central

    Trang, Pham Hong; Ooi, Peck Toung; Zuki, Abu Bakar Zakaria; Noordin, Mustapha Mohamed

    2012-01-01

    It is hypothesized that despite sharing a similar habitat, the Muong indigenous and Vietnamese wild pigs may reveal different gastric morphology. Due to the protective nature of procuring these pigs, a total of 12 Muong indigenous pigs and nine Vietnamese wild pigs stomach collected post mortem were analysed for selected biometric parameters and histology. The result indicated that the stomach of the Vietnamese wild pig is broader with a bigger capacity and greater proportion of proper gastric glands. Interestingly, the stomach mass correlated well with live body weight in both breeds apart from possessing similar histomorphometry of the gastric gland regions. On the other hand, the thicker (P < 0.05) submucosa in the Vietnamese wild pig is attributed to the presence of numerous loose connective tissues, abundant blood vessels, adipose tissues and nerve plexus. The appearance of lymphoid follicles underneath the tubular gastric glands in the Vietnamese wild pig exceeded that of Muong indigenous pigs. This finding suggested that the difference in feeding behavior as well as immunity. In conclusion, adaptations found in the Vietnamese wild pig indicated that this breed is equipped with a bigger and effectively functional stomach to suit its digestive physiology and immunity in the wild. PMID:23093914

  8. Estimate of herpetofauna depredation by a population of wild pigs

    USGS Publications Warehouse

    Jolley, D.B.; Ditchkoff, S.S.; Sparklin, B.D.; Hanson, L.B.; Mitchell, M.S.; Grand, J.B.

    2010-01-01

    Herpetofauna populations are decreasing worldwide, and the range of wild pigs (Sus scrofa) is expanding. Depredation of threatened reptile and amphibian populations by wild pigs could be substantial. By understanding depredation characteristics and rates, more resources can be directed toward controlling populations of wild pigs coincident with threatened or endangered herpetofauna populations. From April 2005 to March 2006 we used firearms to collect wild pigs (n = 68) and examined stomach content for reptiles and amphibians. We found 64 individual reptiles and amphibians, composed of 5 different species, that were consumed by wild pigs during an estimated 254 hours of foraging. Primarily arboreal species (e.g., Anolis carolinensis) became more vulnerable to depredation when temperatures were low and they sought thermal shelter. Other species (e.g., Scaphiopus holbrookii) that exhibit mass terrestrial migrations during the breeding season also faced increased vulnerability to depredation by wild pigs. Results suggest that wild pigs are opportunistic consumers that can exploit and potentially have a negative impact on species with particular life-history characteristics. ?? 2009 American Society of Mammalogists.

  9. Stability of Iowa mutant and wild type A?-peptide aggregates

    SciTech Connect

    Alred, Erik J.; Scheele, Emily G.; Berhanu, Workalemahu M.; Hansmann, Ulrich H. E.

    2014-11-07

    Recent experiments indicate a connection between the structure of amyloid aggregates and their cytotoxicity as related to neurodegenerative diseases. Of particular interest is the Iowa Mutant, which causes early-onset of Alzheimer's disease. While wild-type Amyloid ?-peptides form only parallel beta-sheet aggregates, the mutant also forms meta-stable antiparallel beta sheets. Since these structural variations may cause the difference in the pathological effects of the two A?-peptides, we have studied in silico the relative stability of the wild type and Iowa mutant in both parallel and antiparallel forms. We compare regular molecular dynamics simulations with such where the viscosity of the samples is reduced, which, we show, leads to higher sampling efficiency. By analyzing and comparing these four sets of all-atom molecular dynamics simulations, we probe the role of the various factors that could lead to the structural differences. Our analysis indicates that the parallel forms of both wild type and Iowa mutant aggregates are stable, while the antiparallel aggregates are meta-stable for the Iowa mutant and not stable for the wild type. The differences result from the direct alignment of hydrophobic interactions in the in-register parallel oligomers, making them more stable than the antiparallel aggregates. The slightly higher thermodynamic stability of the Iowa mutant fibril-like oligomers in its parallel organization over that in antiparallel form is supported by previous experimental measurements showing slow inter-conversion of antiparallel aggregates into parallel ones. Knowledge of the mechanism that selects between parallel and antiparallel conformations and determines their relative stability may open new avenues for the development of therapies targeting familial forms of early-onset Alzheimer's disease.

  10. Rovers minimize human disturbance in research on wild animals.

    PubMed

    Le Maho, Yvon; Whittington, Jason D; Hanuise, Nicolas; Pereira, Louise; Boureau, Matthieu; Brucker, Mathieu; Chatelain, Nicolas; Courtecuisse, Julien; Crenner, Francis; Friess, Benjamin; Grosbellet, Edith; Kernaléguen, Laëtitia; Olivier, Frédérique; Saraux, Claire; Vetter, Nathanaël; Viblanc, Vincent A; Thierry, Bernard; Tremblay, Pascale; Groscolas, René; Le Bohec, Céline

    2014-12-01

    Investigating wild animals while minimizing human disturbance remains an important methodological challenge. When approached by a remote-operated vehicle (rover) which can be equipped to make radio-frequency identifications, wild penguins had significantly lower and shorter stress responses (determined by heart rate and behavior) than when approached by humans. Upon immobilization, the rover-unlike humans-did not disorganize colony structure, and stress rapidly ceased. Thus, rovers can reduce human disturbance of wild animals and the resulting scientific bias. PMID:25362361

  11. A solitary case of duck plague in a wild mallard

    USGS Publications Warehouse

    Wobeser, G.; Docherty, D.E.

    1987-01-01

    Duck plague was diagnosed on the basis of pathology and virus isolation in a wild female mallard Anas platyrhynchos found dead near Saskatoon, Saskatchewan. Day-old Pekin ducklings and one of two adult mallards died with lesions typical of duck plague following inoculation of tissue from the wild bird. This is believed to be the only reported case of duck plague in a wild bird since a major outbreak occurred in South Dakota in 1973, and the fourth such report in North America.

  12. Avian influenza virus and free-ranging wild birds

    USGS Publications Warehouse

    Dierauf, Leslie A.; Karesh, W.B.; Ip, Hon S.; Gilardi, K.V.; Fischer, John R.

    2006-01-01

    Recent media and news reports and other information implicate wild birds in the spread of highly pathogenic avian influenza in Asia and Eastern Europe. Although there is little information concerning highly pathogenic avian influenza viruses in wild birds, scientists have amassed a large amount of data on low-pathogenicity avian influenza viruses during decades of research with wild birds. This knowledge can provide sound guidance to veterinarians, public health professionals, the general public, government agencies, and other entities with concerns about avian influenza.

  13. The first detection of PRRSV in wild boars in Slovakia.

    PubMed

    Vilcek, Stefan; Molnar, Ladislav; Vlasakova, Michaela; Jackova, Anna

    2015-01-01

    PRRSV was confirmed by a nested RT-PCR in two out of 129 samples originating from wild boars from Eastern Slovakia. Virus isolates were genetically typed in ORF7 as PRRSV-1, EU-1 with 99.7% (sample 14WB) and 100% (sample 10WB) nucleotide sequence similarity to Lelystad reference strain and Porcilis PRRS vaccine strain, respectively. The origin of PRRSV in these wild boars is unclear but it is highly likely that virus was transmitted from vaccinated domestic pigs to wild boars. PMID:25876282

  14. Increased levels of IgE and autoreactive, polyreactive IgG in wild rodents: implications for the hygiene hypothesis

    USGS Publications Warehouse

    Devalapalli, A.P.; Lesher, A.; Shieh, K.; Solow, J.S.; Everett, M.L.; Edala, A.S.; Whitt, P.; Long, Renee R.; Newton, N.; Parker, W.

    2006-01-01

    To probe the potential role of Th1 versus Th2 reactivity underlying the hygiene hypothesis, intrinsic levels of Th1-associated and Th2-associated antibodies in the serum of wild rodents were compared with that in various strains of laboratory rodents. Studies using rat lung antigens as a target indicated that wild rats have substantially greater levels of autoreactive, polyreactive immunoglobulin G (IgG), but not autoreactive, polyreactive IgM than do laboratory rats, both on a quantitative and qualitative basis. Increased levels of serum IgG and IgE were observed in both wild rats and wild mice relative to their laboratory-raised counterparts, with the effect being most pronounced for IgE levels. Further, wild rats had greater intrinsic levels of both Th1- and Th2-associated IgG subclasses than did lab rats. The habitat (wild versus laboratory raised) had a more substantial impact on immunoglobulin concentration than did age, strain or gender in the animals studied. The presence in wild rodents of increased intrinsic, presumably protective, non-pathogenic responses similar to both autoimmune (autoreactive IgG, Th1-associated) and allergic (IgE, Th2-associated) reactions as well as increased levels of Th1-associated and Th2-associated IgG subclasses points toward a generally increased stimulation of the immune system in these animals rather than a shift in the nature of the immunoreactivity. It is concluded that, at least to the extent that feedback inhibition is a controlling element of immunoreactivity, an overly hygienic environment may affect the threshold of both types of immune responses more so than the balance between the different responses.

  15. Tick-borne pathogens in the blood of wild and domestic ungulates in South Africa: interplay of game and livestock.

    PubMed

    Berggoetz, M; Schmid, M; Ston, D; Wyss, V; Chevillon, C; Pretorius, A-M; Gern, L

    2014-03-01

    We screened for tick-borne pathogens blood samples from 181 wild and domestic ungulates belonging to 18 host species in 4 South African Provinces. Polymerase chain reaction followed by reverse line blotting and sequencing allowed detecting 16 tick-borne pathogen species belonging to the genera Babesia, Theileria, Anaplasma, and Ehrlichia. Ten pathogen species were involved in 29 new host-pathogen combinations. Most infections (77.9%) involved more than one pathogen species. Principal component analysis (PCA) assigned the 163 infections, identified to species level, to 4 groups. Three groups were associated with sheep, cattle, and horse and their respective wild counterparts. Each group was characterised by high homogeneity in pathogen assemblage and host phylogenetic status. These groups characterised the most privileged transmission routes between and among wild and domestic ungulates. The 4th group showed high heterogeneity in pathogen assemblage and host phylogenetic status. This group seems to indicate frequent spill over events in impala of pathogens that usually circulate among cattle- or sheep-related species. Within 6 localities, we sampled an equal number of wild and domestic animals (n=128). On this dataset once having controlled for the significant variation among localities, the infection prevalence and intensity of infection did not differ significantly between wild and domestic hosts. This suggests that both animal types, domestic and wild hosts, could act as evenly efficient sources of infection for themselves and for each other. Overall, this study shed new light on the pathogen circulation naturally achieved at the interplay between wild and domestic ungulates. PMID:24418761

  16. The antitrust wild card and electricity restructuring

    SciTech Connect

    Adelberg, A.W.; Ongman, J.W.

    1997-03-01

    If competitive policy issues in electricity restructuring are not addressed soon--preferably in federal legislation--it`s likely that someone will use the antitrust wild card to achieve its ends. Experience teaches that this may not be the best way to make public policy. As the electric utility industry restructures, it is widely assumed that Congress, the state legislatures, and regulators will set the ground rules for the restructured markets. Experience to date would seem to confirm this view: California`s restructuring legislation, FERC`s Order 888, and the restructuring proceedings in numerous states are all examples. And yet, there remains another player whose role could be equally important: The federal judiciary. While court decisions under the antitrust laws have had little influence to date on the industry`s direction, there is reason to believe that their role could increase dramatically. Certainly this is the history of other industries that have undergone similar transformations. The authors expect that forces at work in the electric utility industry could lead to antitrust actions playing a far greater role in the industry`s future than most observers currently expect. The electric utility industry has already experienced a close brush with the potential for antitrust rulings to unravel critical elements of regulatory policy on restructuring. The DC Circuit`s now famous (or infamous) dicta in the Cajun Electric Power case illustrated how a simple antitrust principle--the prohibition on so-called tying arrangements--could defeat the FERC`s policy with respect to utilities` recovery of billions of dollars of stranded costs. The FERC rebutted that dicta in its remand decisions and elsewhere, and it appears that the issue in now moot in the Cajun litigation itself. But the tying arrangement argument is far from dead.

  17. The digestive morphophysiology of wild, free-living, giraffes.

    PubMed

    Mitchell, G; Roberts, D G; van Sittert, S J

    2015-09-01

    We have measured rumen-complex (rumen, reticulum, omasum, abomasum) and intestine (small and large combined) mass in 32 wild giraffes of both sexes with body masses ranging from 289 to 1441 kg, and parotid gland mass, tongue length and mass, masseter and mandible mass in 9 other giraffes ranging in body mass from 181 to 1396 kg. We have estimated metabolic and energy production rates, feed intake and home range size. Interspecific analysis of mature ruminants show that components of the digestive system increase linearly (Mb(1)) or positively allometric (Mb(>1)) with body mass while variables associated with feed intake scale with metabolic rate (Mb(.75)). Conversely, in giraffes ontogenetic increases in rumen-complex mass were negatively allometric (Mb(<1)), and increases in intestine mass, parotid gland mass, masseter mass, and mandible mass were isometric (Mb(1)). The relative masseter muscle mass (0.14% of Mb) and the relative parotid mass (0.03% of Mb) are smaller than in other ruminants. Increases in tongue length scale with head length(0.72) and Mb(.32) and tongue mass with Mb(.69). Absolute mass of the gastrointestinal tract increased throughout growth but its relative mass declined from 20% to 15% of Mb. Rumen-complex fermentation provides ca 43% of daily energy needs, large intestine fermentation 24% and 33% by digestion of soluble carbohydrates, proteins, and lipids. Dry matter intake (kg) was 2.4% of body mass in juveniles and 1.6% in adults. Energy requirements increased from 35 Mj/day to 190 Mj/day. Browse production rate sustains a core home range of 2.2-11.8 km(2). PMID:26021980

  18. Extensive Variation in Fried Chip Color and Tuber Composition in Cold-Stored Tubers of Wild Potato (Solanum) Germplasm

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Cold-induced sweetening and browning in the Maillard reaction have driven extensive research in the areas of plant physiology, biochemistry, and food science in Solanum tuberosum. To date, research in these areas excluded wild relatives of potato. This is the first assessment of cold-stored tuber c...

  19. Lifetime fecundity of crop-wild sorghum hybrids: implications for gene flow from transgenic sorghum in Africa

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Researchers are developing transgenic crops with enhanced nutrition and higher yields for Africa, but few studies have assessed possible environmental risks of growing these crops. Plans to release transgenic sorghum should consider consequences of gene flow to wild relatives, which represent valuab...

  20. Fatty acid proles of yolk lipids of ve species of wild ducks (Anatidae) differing in dietary preference

    E-print Network

    Bortolotti, Gary R.

    Fatty acid pro®les of yolk lipids of ®ve species of wild ducks (Anatidae) differing in dietary of Saskatchewan, Saskatoon SK, Canada S7N 5E2 (Accepted 6 September 2001) Abstract The fatty acid compositions. For all ®ve species, the fatty acid pro®les conformed to a similar pattern, characterized by relatively