Science.gov

Sample records for 1-m beam trawl

  1. An electric beam trawl for the capture of larval lampreys

    USGS Publications Warehouse

    McLain, Alberton; Dahl, Frederick H.

    1968-01-01

    The chemicals used to control the sea lamprey, Petromyzon marinus, in the Great Lakes have drastically reduced populations of larval lampreys in tributary streams. These larvicides are too costly and difficult to apply, however, in inland lakes, estuaries, and bays. Populations of sea lampreys in these areas constitute a threat to the refinement of the control. The gear available to locate, ample, and evaluate larval populations in deep water are inefficient. Electric shockers, satisfactory for collecting ammocoetes in streams, are limited to shallow water. The use of mechanical devices such as the Petersen dredge, anchor dredge, and the orange-peel dredge is time consuming, inefficient, and relatively ineffective in providing reliable quantitative evaluation of population size and composition over large areas of bottom. A device was required to sample adequately many areas in a short period of time, regardless of the depth of water. Mobility also was essential to permit operation of the unit in the various Great Lakes and in inland waters. An electrified beam trawl has been developed that most nearly meets these requirements. It has been used successfully to collect larvae of the sea lamprey, American brook lamprey (Lampetra lamottei), northern brook lamprey (Ichthyomyzon fossor), and silver lamprey (I. unicuspis). Effectiveness of the trawl did not appear to differ with species.

  2. Shell damage and mortality in the common whelk Buccinum undatum caused by beam trawl fishery

    NASA Astrophysics Data System (ADS)

    Mensink, B. P.; Fischer, C. V.; Cadée, G. C.; Fonds, M.; Ten Hallers-Tjabbes, C. C.; Boon, J. P.

    2000-02-01

    Common whelks Buccinum undatum collected from the southern North Sea were investigated to study the amount of shell damage and mortality caused by beam trawl fishery. The ability of whelks to repair their damaged shells was studied in the laboratory. Whelks ( n=876) were caught with a fine-meshed 3-m beam trawl or with commercial 4- and 12-m beam trawls, while in some areas whelks were also caught with baited traps (used as a reference). Shell damage varied considerably for the different groups. In whelks collected by beam trawling, minor shell damage was observed in 17-75%, and severe damage (when protection against predators and scavengers is lost) in 10-83%. Whelks caught with baited traps sustained only minor shell damage (0-27% of the individuals). Their damage was statistically significantly less than in beam-trawled specimens. Most whelks in all groups exhibited signs of former shell damage, which had since been repaired. Whelk survival was studied in the laboratory over a six-week period. Only 40% of the whelks caught with the 12-m beam trawl survived, irrespective of the damage suffered. Whelks that survived and recovered had repaired their shell after six weeks. More than 95% of the whelks caught with baited traps survived the six-week experimental period; this is statistically significantly higher than the survival of animals caught with the 12-m beam trawl. At five locations females were screened for the presence and stage of imposex. Mild imposex development (mostly stages 1 and 2) was observed at all locations with incidences of 32-80%. It is concluded that beam trawl fishery may be a much greater source of mortality in common whelks than previously thought.

  3. Impact of discards of beam trawl fishing on the nematode community from the Tagus estuary (Portugal).

    PubMed

    Franco, M A; Steyaert, M; Cabral, H N; Tenreiro, R; Chambel, L; Vincx, M; Costa, M J; Vanaverbeke, J

    2008-10-01

    The impact of dead discards, originating from beam trawl fishing on the nematode community from the Tagus estuary was investigated in terms of vertical distribution of the dominant nematode groups. Sediment cores were collected from a mud-flat from the Tagus estuary. Crangoncrangon (Linnaeus, 1758) carcasses were added to the surface of the cores, simulating the settling of dead discards on the sediment. The vertical distribution of the dominant nematode groups was determined up to 4cm deep at four different moments in time post deposition (0, 2, 4 and 6h) and compared to control cores. The C.crangon addition to the sediment led to the formation of black spots and therefore oxygen depleted areas at the sediment surface. The Chromadora/Ptycholaimellus group, normally dominant at the surface layer, migrated downwards due to their high sensibility to toxic conditions. Sabatieria presented the opposite trend and became the dominant group at the surface layer. Since Sabatieria is tolerant to oxygen stressed conditions and high sulphide concentrations, we suggest that it migrated opportunistically towards an unoccupied niche. Daptonema, Metachromadora and Terschellingia did not show any vertical migration, reflecting their tolerance to anoxic and high sulphidic conditions. Our study showed that an accumulation of dead discards at the sediment surface might therefore alter the nematode community vertical distribution. This effect is apparently closely related to toxic conditions in the sediment, induced by the deposition of C.crangon at the sediment surface. These alterations might be temporal and reflect an adaptation of the nematode community to dynamic intertidal environments. PMID:18768190

  4. The dynamics of small-scale patchiness of plaice and sole as reflected in the catch rates of the Dutch beam trawl fleet and its implications for the fleet dynamics

    NASA Astrophysics Data System (ADS)

    Poos, Jan-Jaap; Rijnsdorp, Adriaan D.

    2007-07-01

    Catch rates of sole Solea solea and plaice Pleuronectes platessa in the Dutch beam trawl fleet operating in the North Sea show spatio-temporal variation. The variation in catch rates reflects differences in abundance of the species. Up to 45% of the variation in catch rates can be explained by the time of day of the catch, the engine power of the vessel and the migration cycles of the species. Also, spatial covariance was found in the residual variation for both species using variograms and covariance functions. The ranges of the spatial structure were found to be between approximately 20 to 45 nautical miles, indicating patchy distribution of the species. No differences in the ranges of the spatial structures were found between different seasons. Cross-covariance analysis shows the patches lasted up to two weeks. The implication of the spatial pattern in flatfish for the dynamics of effort allocation is discussed.

  5. Trawling damage to Northeast Atlantic ancient coral reefs.

    PubMed

    Hall-Spencer, Jason; Allain, Valerie; Fosså, Jan Helge

    2002-03-01

    This contribution documents widespread trawling damage to cold-water coral reefs at 840-1300 m depth along the West Ireland continental shelf break and at 200 m off West Norway. These reefs are spectacular but poorly known. By-catches from commercial trawls for deep-water fish off West Ireland included large pieces (up to 1 m(2)) of coral that had been broken from reefs and a diverse array of coral-associated benthos. Five azooxanthellate scleractinarian corals were identified in these by-catches, viz. Desmophyllum cristagalli, Enallopsammia rostrata, Lophelia pertusa, Madrepora oculata and Solenosmilia variabilis. Dating of carbonate skeletons using (14)C accelerator mass spectrometry showed that the trawled coral matrix was at least 4550 years old. Surveys by remotely operated vehicles in Norway showed extensive fishing damage to L. pertusa reefs. The urgent need for deep-water coral conservation measures is discussed in a Northeast Atlantic context.

  6. Impacts of trawling on benthic macro-fauna and -flora of the Spencer Gulf prawn fishing grounds

    NASA Astrophysics Data System (ADS)

    Svane, Ib; Hammett, Zoe; Lauer, Peter

    2009-05-01

    The overall effects of trawling on benthic habitats and their assemblages are dependent on the distribution and intensity of trawl effort. The benthic habitats of the Spencer Gulf prawn trawling grounds are subjected to known variable levels of trawling disturbance recorded from fisher's logbooks. These habitats have not been quantitatively investigated. The aim of the study was firstly to characterise the macro-faunal and -floral assemblages and secondly, to comparatively assess trawl impact by testing the null hypothesis of no differences between five sites exposed to different intensity of trawl effort. The distribution and abundance of benthic macro-fauna and -flora were studied at two sampling resolutions by using beam trawl sampling (˜10,000 m 2) and underwater stereophotography (˜4.5 m 2) at five sites with different levels of trawl disturbance (effort). The results showed that the Spencer Gulf prawn trawling grounds are characterised by sandy sediments with a low content of silt and clay, with the exception of one site with very fine gravel. Biomass, abundance and cover of macro-fauna and -flora were generally low throughout, but with large differences among sites. Biomass, abundance and cover were found to be negatively correlated to both trawl hours from 1994-1998 and during the period of study. ANOSIM and SIMPER analyses using biomass, abundance and percentage cover as variables showed significant differences between sites with eight species or taxonomic groups contributing more than 10% to the observed similarity within sites. The two northern sites were dominated by sponges and the bearded mussel, Trichomya hirsutus, and the southern hammer oyster, Malleus meridianus. Other species that contributed to the similarity within sites were the ascidian, Polycarpa viridis, mobile epifauna (the blue swimmer crab, Portunus pelagicus, and the western king prawn, Penaeus (Melicertus) latisulcatus) and demersal fish species (Degens leatherjacket, Thamnaconus

  7. 50 CFR 622.25 - Exemptions for Gulf groundfish trawling.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE FISHERIES OF THE CARIBBEAN, GULF OF MEXICO, AND SOUTH ATLANTIC Reef Fish Resources of the Gulf of Mexico § 622.25 Exemptions for Gulf groundfish trawling. Gulf groundfish trawling means fishing in the Gulf EEZ by a vessel that uses a bottom trawl, the unsorted......

  8. A trawl-resistant ocean bottom seismometer

    NASA Astrophysics Data System (ADS)

    Barclay, A. H.; Gassier, D.; Webb, S. C.; Koczynski, T.; Oletu, V.; Gaherty, J. B.; Tolstoy, M.

    2010-12-01

    Long-term ocean-bottom seismometer (OBS) deployments are difficult on continental shelves and other shallow regions because of the hazard from bottom trawling. Seafloor instruments can be damaged, destroyed, or prematurely released by a trawl net that is weighted with rollers and dragged across the seafloor. Bottom trawling is extensive in many areas and past instrument losses have led the U. S. OBS Instrument Pool (OBSIP) to avoid long-duration deployments in water depths shallower than 1000 m. This restriction is particularly limiting for passive-source seismic studies at active continental margins. We report on the development and testing of a new trawl-resistant OBS. The seismometer and datalogger are protected within a heavy (450 kg) eight-sided steel shield that has a low, smooth profile (2 m basal diameter and a central peak height of 50 cm) and is designed to resist and deflect bottom-trawling equipment. The sides of the shield are closed in order to protect the seismometer from seafloor currents that can cause tilt-related low-frequency seismic noise. Shield-generated noise (from mechanical resonance or from interaction with seafloor currents) is reduced by decoupling the sensor from the shield and by maximizing the distance between the seismometer and the shield’s bottom rim. The heavy weight and low profile of the instrument preclude the use of dropweights for deployment and recovery. The OBS is instead lowered to the seafloor and recovered by attaching a lifting line using a remotely-operated vehicle. Twenty trawl-resistant OBSs, equipped with Trillium Compact seismometers and absolute pressure gauges, are being constructed and will be deployed as a component of the NSF Cascadia Initiative in the summer of 2011.

  9. A ‘Simple Anterior Fish Excluder’ (SAFE) for Mitigating Penaeid-Trawl Bycatch

    PubMed Central

    McHugh, Matthew J.; Broadhurst, Matt K.; Sterling, David J.; Millar, Russell B.

    2015-01-01

    Various plastic strips and sheets (termed ‘simple anterior fish excluders’−SAFEs) were positioned across the openings of penaeid trawls in attempts at reducing the unwanted bycatches of small teleosts. Initially, three SAFEs (a single wire without, and with small and large plastic panels) were compared against a control (no SAFE) on paired beam trawls. All SAFEs maintained targeted Metapenaeus macleayi catches, while the largest plastic SAFE significantly reduced total bycatch by 51% and the numbers of Pomatomus saltatrix, Mugil cephalus and Herklotsichthys castelnaui by up to 58%. A redesigned SAFE (‘continuous plastic’) was subsequently tested (against a control) on paired otter trawls, significantly reducing total bycatch by 28% and P. saltatrix and H. castelnaui by up to 42%. The continuous-plastic SAFE also significantly reduced M. macleayi catches by ~7%, but this was explained by ~5% less wing-end spread, and could be simply negated through otter-board refinement. Further work is required to refine the tested SAFEs, and to quantify species-specific escape mechanisms. Nevertheless, the SAFE concept might represent an effective approach for improving penaeid-trawl selectivity. PMID:25837892

  10. Ideal free distribution or dynamic game? An agent-based simulation study of trawling strategies with varying information

    NASA Astrophysics Data System (ADS)

    Beecham, J. A.; Engelhard, G. H.

    2007-10-01

    An ecological economic model of trawling is presented to demonstrate the effect of trawling location choice strategy on net input (rate of economic gain of fish caught per time spent less costs). Fishing location choice is considered to be a dynamic process whereby trawlers chose from among a repertoire of plastic strategies that they modify if their gains fall below a fixed proportion of the mean gains of the fleet as a whole. The distribution of fishing across different areas of a fishery follows an approximate ideal free distribution (IFD) with varying noise due to uncertainty. The least-productive areas are not utilised because initial net input never reaches the mean yield of better areas subject to competitive exploitation. In cases, where there is a weak temporal autocorrelation between fish stocks in a specific location, a plastic strategy of local translocation between trawls mixed with longer-range translocation increases realised input. The trawler can change its translocation strategy in the light of information about recent trawling success compared to its long-term average but, in contrast to predictions of the Marginal Value Theorem (MVT) model, does not know for certain what it will find by moving, so may need to sample new patches. The combination of the two types of translocation mirrored beam-trawling strategies used by the Dutch fleet and the resultant distribution of trawling effort is confirmed by analysis of historical effort distribution of British otter trawling fleets in the North Sea. Fisheries exploitation represents an area where dynamic agent-based adaptive models may be a better representation of the economic dynamics of a fleet than classically inspired optimisation models.

  11. Assessing prey fish populations in Lake Michigan: Comparison of simultaneous acoustic-midwater trawling with bottom trawling

    USGS Publications Warehouse

    Fabrizio, Mary C.; Adams, Jean V.; Curtis, Gary L.

    1997-01-01

    The Lake Michigan fish community has been monitored since the 1960s with bottom trawls, and since the late 1980s with acoustics and midwater trawls. These sampling tools are limited to different habitats: bottom trawls sample fish near bottom in areas with smooth substrates, and acoustic methods sample fish throughout the water column above all substrate types. We compared estimates of fish densities and species richness from daytime bottom trawling with those estimated from night-time acoustic and midwater trawling at a range of depths in northeastern Lake Michigan in summer 1995. We examined estimates of total fish density as well as densities of alewife Alosa pseudoharengus (Wilson), bloater Coregonus hoyi (Gill), and rainbow smelt Osmerus mordax (Mitchell) because these three species are the dominant forage of large piscivores in Lake Michigan. In shallow water (18 m), we detected more species but fewer fish (in fish/ha and kg/ha) with bottom trawls than with acoustic-midwater trawling. Large aggregations of rainbow smelt were detected by acoustic-midwater trawling at 18 m and contributed to the differences in total fish density estimates between gears at this depth. Numerical and biomass densitites of bloaters from all depths were significantly higher when based on bottom trawl samples than on acoustic-midwater trawling, and this probably contributed to the observed significant difference between methods for total fish densities (kg/ha) at 55 m. Significantly fewer alewives per ha were estimated from bottom trawling than from acoustics-midwater trawling at 55 m, and in deeper waters, no alewives were taken by bottom trawling. The differences detected between gears resulted from alewife, bloater, and rainbow smelt vertical distributions, which varied with lake depth and time of day. Because Lake Michigan fishes are both demersal and pelagic, a single sampling method cannot be used to completely describe characteristics of the fish community.

  12. 77 FR 37647 - Sea Turtle Conservation; Shrimp Trawling Requirements; Public Hearing Notification

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-22

    ... on May 10, 2012 (77 FR 27411), you may submit comments on this proposed rule, identified by 0648-BC10... and require all skimmer trawls, pusher-head trawls, and wing nets (butterfly trawls) rigged...

  13. 77 FR 38266 - Sea Turtle Conservation; Shrimp Trawling Requirements; Public Hearing

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-27

    .... ADDRESSES: As published on May 10, 2012 (77 FR 27411), you may submit comments on this proposed rule... and require all skimmer trawls, pusher-head trawls, and wing nets (butterfly trawls) rigged...

  14. Effects of bottom trawling on fish foraging and feeding

    PubMed Central

    Johnson, Andrew Frederick; Gorelli, Giulia; Jenkins, Stuart Rees; Hiddink, Jan Geert; Hinz, Hilmar

    2015-01-01

    The effects of bottom trawling on benthic invertebrates include reductions of biomass, diversity and body size. These changes may negatively affect prey availability for demersal fishes, potentially leading to reduced food intake, body condition and yield of fishes in chronically trawled areas. Here, the effect of trawling on the prey availability and diet of two commercially important flatfish species, plaice (Pleuronectes platessa) and dab (Limanda limanda), was investigated over a trawling intensity gradient in the Irish Sea. Previous work in this area has shown that trawling negatively affects the condition of plaice but not of dab. This study showed that reductions in local prey availability did not result in reduced feeding of fish. As trawling frequency increased, both fish and prey biomass declined, such that the ratio of fish to prey remained unchanged. Consequently, even at frequently trawled sites with low prey biomass, both plaice and dab maintained constant levels of stomach fullness and gut energy contents. However, dietary shifts in plaice towards energy-poor prey items were evident when prey species were analysed individually. This, together with a potential decrease in foraging efficiency due to low prey densities, was seen as the most plausible cause for the reduced body condition observed. Understanding the relationship between trawling, benthic impacts, fish foraging and resultant body condition is an important step in designing successful mitigation measures for future management strategies in bottom trawl fisheries. PMID:25621336

  15. 50 CFR 660.120 - Trawl fishery-crossover provisions.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Trawl fishery-crossover provisions. 660.120 Section 660.120 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry Trawl Fisheries...

  16. 50 CFR 660.112 - Trawl fishery-prohibitions.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Trawl fishery-prohibitions. 660.112 Section 660.112 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry Trawl Fisheries §...

  17. 50 CFR 660.111 - Trawl fishery-definitions.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Trawl fishery-definitions. 660.111 Section 660.111 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry Trawl Fisheries §...

  18. 50 CFR 660.111 - Trawl fishery-definitions.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Trawl fishery-definitions. 660.111 Section 660.111 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry Trawl Fisheries §...

  19. 50 CFR 660.111 - Trawl fishery-definitions.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Trawl fishery-definitions. 660.111 Section 660.111 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry Trawl Fisheries §...

  20. 50 CFR 660.120 - Trawl fishery-crossover provisions.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Trawl fishery-crossover provisions. 660.120 Section 660.120 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry Trawl Fisheries...

  1. 50 CFR 660.111 - Trawl fishery-definitions.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Trawl fishery-definitions. 660.111 Section 660.111 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry Trawl Fisheries §...

  2. 50 CFR 660.111 - Trawl fishery-definitions.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Trawl fishery-definitions. 660.111 Section 660.111 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry Trawl Fisheries §...

  3. 50 CFR 660.112 - Trawl fishery-prohibitions.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Trawl fishery-prohibitions. 660.112 Section 660.112 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry Trawl Fisheries §...

  4. 50 CFR 660.120 - Trawl fishery-crossover provisions.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Trawl fishery-crossover provisions. 660.120 Section 660.120 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry Trawl Fisheries...

  5. 50 CFR 660.120 - Trawl fishery-crossover provisions.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Trawl fishery-crossover provisions. 660.120 Section 660.120 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry Trawl Fisheries...

  6. 50 CFR 660.112 - Trawl fishery-prohibitions.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Trawl fishery-prohibitions. 660.112 Section 660.112 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry Trawl Fisheries §...

  7. 50 CFR 660.120 - Trawl fishery-crossover provisions.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Trawl fishery-crossover provisions. 660.120 Section 660.120 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry Trawl Fisheries...

  8. 78 FR 9024 - Sea Turtle Conservation; Shrimp Trawling Requirements

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-02-07

    ... (77 FR 27411) that would require all skimmer trawls, pusher-head trawls, and wing nets (butterfly..., 2012 (77 FR 27411), is withdrawn as of February 7, 2013. FOR FURTHER INFORMATION CONTACT: Michael... Fisheries was ] published on May 18, 2012 (77 FR 29636). The comment periods for the proposed rule and...

  9. Double passing the Kitt Peak 1-m Fourier transform spectrometer

    NASA Technical Reports Server (NTRS)

    Jennings, D. E.; Hubbard, R.; Brault, J. W.

    1985-01-01

    Attention is given to a simple technique for performing the conversion of the Kitt Peak 1-m Fourier transform spectrometer's dual input/output optical configuration to a double pass configuration that improves spectral resolution by a factor of 2. The modification is made by placing a flat mirror in the output beam from each cat's eye, retroreflecting the beams back through the cat's eyes to the first beam splitter. A single detector is placed at the second input port, which then becomes the instrument's output.

  10. Sidescan-sonar mapping of benthic trawl marks on the shelf and slope off Eureka, California

    USGS Publications Warehouse

    Friedlander, A.M.; Boehlert, G.W.; Field, M.E.; Mason, J.E.; Gardner, J.V.; Dartnell, P.

    1999-01-01

    The abundance and orientation of trawl marks was quantified over an extensive portion (>2700 km2) of the Eureka, California, outer shelf and slope, an important commercial bottom trawling ground for such high-value species as rockfish, sole, and sablefish. Fishing logbook data indicate that the entire reporting area was trawled about one and a half times on an average annual basis and that some areas were trawled over three times annually. High-resolution sidescan-sonar images of the study area revealed deep gouges on the seafloor, caused by heavy steel trawl doors that act to weigh down and spread open the bottom trawls. These trawl marks are commonly oriented parallel to bathymetric contours and many could be traced for several kilometers. Trawl marks showed a quadratic relationship in relation to water depth, with the greatest number of trawl marks observed at ~400 m. There was a significant positive correlation between the number of trawl marks observed on the sidescan images and the number of annual trawl hours logged within reporting areas. This finding indicates that acoustic remote sensing is a promising independent approach to evaluate fishing effort on a scale consistent with commercial fishing activities. Bottom trawling gear is known to modify seafloor habitats by altering benthic habitat complexity and by removing or damaging infauna and sessile organisms. Identifying the extent of trawling in these areas may help determine the effects of this type of fishing gear on the benthos and develop indices of habitat disturbance caused by fishing activities.

  11. Effects of trawl selectivity and genetic parameters on fish body length under long-term trawling

    NASA Astrophysics Data System (ADS)

    Yu, Yang; Sun, Peng; Cui, He; Sheng, Huaxiang; Zhao, Fenfang; Tang, Yanli; Chen, Zelin

    2015-10-01

    Long-term fishing pressure affects the biological characteristics of exploited fish stocks. The biological characteristics of hairtail ( Trichiurus lepturus) in the East China Sea are unable to recover because of long-term trawling. Fishing induces evolutionary effects on the fish's biological characteristics. Evidence of these changes includes small size at age, a shift to earlier age structure, and early maturation. Natural and artificial selection usually affect the fish's life history. Selection can induce different chances of reproduction, and individual fish can give a different genetic contribution to the next generation. In this study, analysis of time-dependent probability of significance and test of sensitivity were used to explore the effects of fish exploitation rate, mesh size, and heritability with long-term trawling. Results showed that fishing parameters were important drivers to exploited fish population. However, genetic traits altered by fishing were slow, and the changes in biological characteristics were weaker than those caused by fishing selection. Exploitation rate and mesh size exhibited similar evolutionary trend tendency under long-term fishing. The time-dependent probability of significance trend showed a gradual growth and tended to be stable. Therefore, the direction of fishing-induced evolution and successful management of fish species require considerable attention to contribute to sustainable fisheries in China.

  12. Size selection of Antarctic krill (Euphausia superba) in trawls.

    PubMed

    Krag, Ludvig A; Herrmann, Bent; Iversen, Svein A; Engås, Arill; Nordrum, Sigve; Krafft, Bjørn A

    2014-01-01

    Trawlers involved in the Antarctic krill (Euphausia superba) fishery use different trawl designs, and very little is known about the size selectivity of the various gears. Size selectivity quantifies a given trawl's ability to catch different sizes of a harvested entity, and this information is crucial for the management of a sustainable fishery. We established a morphological description of krill and used it in a mathematical model (FISHSELECT) to predict the selective potential of diamond meshes measuring 5-40 mm with mesh opening angles (oa) ranging from 10 to 90°. We expected the majority of krill to encounter the trawl netting in random orientations due to high towing speeds and the assumed swimming capabilities of krill. However, our results indicated that size selectivity of krill is a well-defined process in which individuals encounter meshes at an optimal orientation for escapement. The simulation-based results were supported by data from experimental trawl hauls and underwater video images of the mesh geometry during fishing. Herein we present predictions for the size selectivity of a range of netting configurations relevant to the krill fishery. The methods developed and results described are important tools for selecting optimal trawl designs for krill fishing.

  13. 50 CFR Figure 26 to Part 679 - Modified Nonpelagic Trawl Gear

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Modified Nonpelagic Trawl Gear 26 Figure... ALASKA Pt. 679, Fig. 26 Figure 26 to Part 679—Modified Nonpelagic Trawl Gear This figure shows the location of elevating devices in the elevated section of modified nonpelagic trawl gear, as specified...

  14. 75 FR 13081 - Fisheries off West Coast States; Pacific Coast Groundfish Fishery; Trawl Rationalization Program

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-03-18

    ... National Oceanic and Atmospheric Administration RIN 0648-XRO1 Fisheries off West Coast States; Pacific Coast Groundfish Fishery; Trawl Rationalization Program AGENCY: National Marine Fisheries Service (NMFS... trawl rationalization program that would affect the limited entry trawl fishery of the Pacific...

  15. Job Satisfaction in the Shrimp Trawl Fisheries of Vietnam

    ERIC Educational Resources Information Center

    Sinh, Le Xuan

    2012-01-01

    This paper investigates the job satisfaction of small-scale shrimp trawl fishers in the vicinity of Camau National Park in southern Vietnam. The research sample consisted of 77 fishers who belong to a growing population of shrimp fishers in the region. The results suggest that 60% would change their fishing metier, 78% would leave fishing for…

  16. Job Satisfaction in the Shrimp Trawl Fisheries of Chennai, India

    ERIC Educational Resources Information Center

    Bavinck, Maarten

    2012-01-01

    Shrimp trawling represents an important fishing metier in South India, generating high levels of employment and economic value. It is also a contested metier, ostensibly contributing to environmental degradation and social inequality. This paper investigates the job satisfaction of crew members (captains and workers) on board the shrimp trawlers…

  17. 50 CFR 654.23 - Southwest Florida seasonal trawl closure.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 10 2011-10-01 2011-10-01 false Southwest Florida seasonal trawl closure. 654.23 Section 654.23 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE STONE CRAB FISHERY OF THE GULF OF MEXICO...

  18. 50 CFR 622.47 - Gulf groundfish trawl fishery.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 8 2010-10-01 2010-10-01 false Gulf groundfish trawl fishery. 622.47 Section 622.47 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE FISHERIES OF THE CARIBBEAN, GULF, AND SOUTH ATLANTIC Management Measures § 622.47 Gulf groundfish...

  19. 50 CFR 622.47 - Gulf groundfish trawl fishery.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 10 2011-10-01 2011-10-01 false Gulf groundfish trawl fishery. 622.47 Section 622.47 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE FISHERIES OF THE CARIBBEAN, GULF, AND SOUTH ATLANTIC Management Measures § 622.47 Gulf groundfish...

  20. 50 CFR 622.47 - Gulf groundfish trawl fishery.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 12 2012-10-01 2012-10-01 false Gulf groundfish trawl fishery. 622.47 Section 622.47 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE FISHERIES OF THE CARIBBEAN, GULF, AND SOUTH ATLANTIC Management Measures § 622.47 Gulf groundfish...

  1. 77 FR 27411 - Sea Turtle Conservation; Shrimp Trawling Requirements

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-05-10

    ... presenting various approaches to regulating trawl fisheries in the Atlantic Ocean (74 FR 21627). The scoping... mortality of sea turtles in the southeastern U.S. shrimp fisheries, and to aid in the protection and... turtles in U.S. waters are listed as either endangered or threatened under the Endangered Species Act...

  2. Energy direct inputs and greenhouse gas emissions of the main industrial trawl fishery of Brazil.

    PubMed

    Port, Dagoberto; Perez, Jose Angel Alvarez; de Menezes, João Thadeu

    2014-11-15

    This study provides first-time estimates of direct fuel inputs and greenhouse gas emissions produced by the trawl fishing fleet operating off southeastern and southern Brazil. Analyzed data comprised vessel characteristics, landings, fishing areas and trawling duration of 10,144 fishing operations monitored in Santa Catarina State from 2003 to 2011. Three main fishing strategies were differentiated: 'shrimp trawling', 'slope trawling' and 'pair trawling'. Jointly these operations burned over 9.1 million liters of diesel to land 342.3 million kilograms of fish and shellfish. Annually, 0.023-0.031 l were consumed for every kg of catch landed. Because all fishing strategies relied on multispecific catches to raise total incomes, estimates of fuel use intensity were generally low but increased 200-900% if only nominal targets were considered. In nine years, trawling operations emitted 6.69 GgC to the atmosphere, between 2300 and 3300 tons CO2 per year.

  3. Energy direct inputs and greenhouse gas emissions of the main industrial trawl fishery of Brazil.

    PubMed

    Port, Dagoberto; Perez, Jose Angel Alvarez; de Menezes, João Thadeu

    2016-06-15

    This study provides first-time estimates of direct fuel inputs and greenhouse gas emissions produced by the trawl fishing fleet operating off southeastern and southern Brazil. Analyzed data comprised vessel characteristics, landings, fishing areas and trawling duration of 10,144 fishing operations monitored in Santa Catarina State from 2003 to 2011. Three main fishing strategies were differentiated: 'shrimp trawling', 'slope trawling' and 'pair trawling'. Jointly these operations burned over 141.5millionl of diesel to land 342.3millionkg of fish and shellfish. Annually, 0.36-0.48l were consumed for every kg of catch landed. Because all fishing strategies relied on multispecific catches to raise total incomes, estimates of fuel use intensity were generally low but increased 316-1025% if only nominal targets were considered. In nine years, trawling operations emitted 104.07GgC to the atmosphere, between 36,800-49,500tons CO2 per year.

  4. Energy direct inputs and greenhouse gas emissions of the main industrial trawl fishery of Brazil.

    PubMed

    Port, Dagoberto; Perez, Jose Angel Alvarez; de Menezes, João Thadeu

    2016-06-15

    This study provides first-time estimates of direct fuel inputs and greenhouse gas emissions produced by the trawl fishing fleet operating off southeastern and southern Brazil. Analyzed data comprised vessel characteristics, landings, fishing areas and trawling duration of 10,144 fishing operations monitored in Santa Catarina State from 2003 to 2011. Three main fishing strategies were differentiated: 'shrimp trawling', 'slope trawling' and 'pair trawling'. Jointly these operations burned over 141.5millionl of diesel to land 342.3millionkg of fish and shellfish. Annually, 0.36-0.48l were consumed for every kg of catch landed. Because all fishing strategies relied on multispecific catches to raise total incomes, estimates of fuel use intensity were generally low but increased 316-1025% if only nominal targets were considered. In nine years, trawling operations emitted 104.07GgC to the atmosphere, between 36,800-49,500tons CO2 per year. PMID:27068561

  5. 50 CFR 660.337 - Trawl rationalization program - data collection requirements.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ..., NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish Fisheries § 660.337 Trawl rationalization program - data...

  6. Evaluation of Midwater Trawl Selectivity and its Influence on Acoustic-Based Fish Population Surveys

    NASA Astrophysics Data System (ADS)

    Williams, Kresimir

    Trawls are used extensively during fisheries abundance surveys to derive estimates of fish density and, in the case of acoustic-based surveys, to identify acoustically sampled fish populations. However, trawls are selective in what fish they retain, resulting in biased estimates of density, species, and size compositions. Selectivity of the midwater trawl used in acoustic-based surveys of walleye pollock (Theragra chalcogramma) was evaluated using multiple methods. The effects of trawl selectivity on the acoustic-based survey abundance estimates and the stock assessment were evaluated for the Gulf of Alaska walleye pollock population. Selectivity was quantified using recapture, or pocket, nets attached to the outside of the trawl. Pocket net catches were modeled using a hierarchical Bayesian model to provide uncertainty in selectivity parameter estimates. Significant under-sampling of juvenile pollock by the midwater trawl was found, with lengths at 50% retention ranging from 14--26 cm over three experiments. Escapement was found to be light dependent, with more fish escaping in dark conditions. Highest escapement rates were observed in the aft of the trawl near to the codend though the bottom panel of the trawl. The behavioral mechanisms involved in the process of herding and escapement were evaluated using stereo-cameras, a DIDSON high frequency imaging sonar, and pocket nets. Fish maintained greater distances from the trawl panel during daylight, suggesting trawl modifications such as increased visibility of netting materials may evoke stronger herding responses and increased retention of fish. Selectivity and catchability of pollock by the midwater trawl was also investigated using acoustic density as an independent estimate of fish abundance to compare with trawl catches. A modeling framework was developed to evaluate potential explanatory factors for selectivity and catchability. Selectivity estimates were dependent on which vessel was used for the survey

  7. The impact of shrimp trawling and associated sediment resuspension in mud dominated, shallow estuaries

    SciTech Connect

    Dellapenna, Timothy M.; Allison, Mead A.; Gill, Gary A.; Lehman, Ronald D.; Warnken, Kent W.

    2006-07-18

    To address the relative importance of shrimp trawling on seabed resuspension and bottom characteristics in shallow estuaries, a series of disturbance and monitoring experiments were conducted at a bay bottom mud site (2.5 m depth) in Galveston Bay, Texas in July 1998 and May 1999. Based on pre- and post-trawl sediment profiles of 7Be; pore water dissolved oxygen and sulfide concentration; and bulk sediment properties, it was estimated that the trawl rig, including the net, trawl doors, and ‘‘tickler chain,’’ excavate the seabed to a maximum depth of approximately 1.5 cm, with most areas displaying considerably less disturbance. Water column profile data in the turbid plume left by the trawl in these underconsolidated muds (85e90% porosity; <0.25 kPa undrained shear strength) demonstrate that suspended sediment inventories of up to 85e90 mg/cm2 are produced immediately behind the trawl net; an order of magnitude higher than pre-trawl inventories and comparable to those observed during a 9e10 m/s wind event at the study site. Plume settling and dispersion caused suspended sediment inventories to return to pre-trawl values about 14 min after trawl passage in two separate experiments, indicating particles re-settle primarily as flocs before they can be widely dispersed by local currents. As a result of the passage of the trawl rig across the seabed, shear strength of the sediment surface showed no significant increase, suggesting that bed armoring is not taking place and the trawled areas will not show an increase in critical shear stress.

  8. Satellite-based quantification of the bottom trawling induced sediment resuspension over an entire shelf

    NASA Astrophysics Data System (ADS)

    Oberle, F. J.; Cheriton, O. M.; Hanebuth, T. J. J.

    2014-12-01

    The effect of bottom trawling activities on continental shelves has been a topic of interest for both fishery resource studies and ecological impact studies for a while. However, the impact of demersal fishing gear was almost exclusively studied from a perspective of its effects on benthic fauna, but recently it has also attracted attention due to its profound impact on sediments. Here we present the first study to quantify the trawling-induced sediment resuspension effect by combining satellite-based spatial patterns of bottom trawling with quantitative measurements of induced sediment plumes. This study examined high-resolution GPS vessel monitoring data from one year (2011-2012) to quantify the sedimentary budget caused by bottom trawling activity for the entire NW Iberian shelf, an area that is widely affected by chronic (continuous and intensive) commercial bottom trawling and is exemplary for many other narrow shelves worldwide. By filtering the GPS data by vessel type, vessel speed, and geometry of the trawl path, we resolved geographically detailed bottom trawling activities with varying local trawling intensities depending both on legal restrictions and bedrock geomorphology. Initial results show that trawling-induced resuspended sediments mark a significant if not dominant factor for a source to sink sedimentary budget, as they are calculated to be approximately two times as large as fluvial sedimentary input to the shelf. Ultimately, these results not only allow for a trawling affected sediment budget but also significantly help with marine management decisions by allowing to predict the mobilization and transport of sediment caused by bottom trawling gear at the level of a specific fishing fleet or ecosystem.

  9. 30 CFR 250.1741 - If I drag a trawl across a site, what requirements must I meet?

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 30 Mineral Resources 2 2011-07-01 2011-07-01 false If I drag a trawl across a site, what... Facilities § 250.1741 If I drag a trawl across a site, what requirements must I meet? If you drag a trawl...) You must drag the trawl in a grid-like pattern as shown in the following table: For a— You must...

  10. 50 CFR Figure 26 to Part 679 - Modified Nonpelagic Trawl Gear

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Modified Nonpelagic Trawl Gear 26 Figure 26 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND... ALASKA Pt. 679, Fig. 26 Figure 26 to Part 679—Modified Nonpelagic Trawl Gear ER06OC10.050...

  11. 50 CFR Figure 26 to Part 679 - Modified Nonpelagic Trawl Gear

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Modified Nonpelagic Trawl Gear 26 Figure 26 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND... ALASKA Pt. 679, Fig. 26 Figure 26 to Part 679—Modified Nonpelagic Trawl Gear ER06OC10.050...

  12. 50 CFR Table 51 to Part 679 - Modified Gear Trawl Zone

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Modified Gear Trawl Zone 51 Table 51 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC..., Table 51 Table 51 to Part 679—Modified Gear Trawl Zone Longitude Latitude 171 45.00 W 61 00.00 N 169...

  13. 50 CFR Figure 26 to Part 679 - Modified Nonpelagic Trawl Gear

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Modified Nonpelagic Trawl Gear 26 Figure 26 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND... ALASKA Pt. 679, Fig. 26 Figure 26 to Part 679—Modified Nonpelagic Trawl Gear ER06OC10.050...

  14. 50 CFR Table 51 to Part 679 - Modified Gear Trawl Zone

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Modified Gear Trawl Zone 51 Table 51 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC..., Table 51 Table 51 to Part 679—Modified Gear Trawl Zone Longitude Latitude 171 45.00 W 61 00.00 N 169...

  15. 50 CFR Table 51 to Part 679 - Modified Gear Trawl Zone

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Modified Gear Trawl Zone 51 Table 51 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC..., Table 51 Table 51 to Part 679—Modified Gear Trawl Zone Longitude Latitude 171 45.00 W 61 00.00 N 169...

  16. 50 CFR 660.115 - Trawl fishery-cost recovery program.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Trawl fishery-cost recovery program. 660.115 Section 660.115 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry Trawl Fisheries...

  17. 75 FR 54292 - Fisheries of the Northeastern United States; Discard Provision for Herring Midwater Trawl Vessels...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-07

    ... On September 4, 2009, NMFS published a proposed rule (74 FR 45798) to implement changes to access... trawl fishery. A final rule was published on November 2, 2009 (74 FR 56562) that implemented regulations... United States; Discard Provision for Herring Midwater Trawl Vessels Fishing in Groundfish Closed Area...

  18. 30 CFR 250.1741 - If I drag a trawl across a site, what requirements must I meet?

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 30 Mineral Resources 2 2014-07-01 2014-07-01 false If I drag a trawl across a site, what... I drag a trawl across a site, what requirements must I meet? If you drag a trawl across the site in accordance with § 250.1740, you must meet all of the requirements of this section. (a) You must drag...

  19. 30 CFR 250.1741 - If I drag a trawl across a site, what requirements must I meet?

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 30 Mineral Resources 2 2010-07-01 2010-07-01 false If I drag a trawl across a site, what... Decommissioning Activities Site Clearance for Wells, Platforms, and Other Facilities § 250.1741 If I drag a trawl across a site, what requirements must I meet? If you drag a trawl across the site in accordance...

  20. The 'W' prawn-trawl with emphasised drag-force transfer to its centre line to reduce overall system drag.

    PubMed

    Balash, Cheslav; Sterling, David; Binns, Jonathan; Thomas, Giles; Bose, Neil

    2015-01-01

    For prawn trawling systems, drag reduction is a high priority as the trawling process is energy intensive. Large benefits have occurred through the use of multiple-net rigs and thin twine in the netting. An additional positive effect of these successful twine-area reduction strategies is the reduced amount of otter board area required to spread the trawl systems, which leads to further drag reduction. The present work investigated the potential of redirecting the drag-strain within a prawn trawl away from the wings and the otter boards to the centre line of the trawl, where top and bottom tongues have been installed, with an aim to minimise the loading/size of the otter boards required to spread the trawl. In the system containing the new 'W' trawl, the drag redirected to the centre-line tongues is transferred forward through a connected sled and towing wires to the trawler. To establish the extent of drag redirection to the centre-line tongues and the relative drag benefits of the new trawl system, conventional and 'W' trawls of 3.65 m headline length were tested firstly over a range of spread ratios in the flume tank, and subsequently at optimum spread ratio in the field. The developed 'W' trawl effectively directed 64% of netting-drag off the wings and onto the centre tongues, which resulted in drag savings in the field of ∼20% for the associated 'W' trawl/otter-board/sled system compared to the traditional trawl/otter-board arrangement in a single trawl or twin rig configuration. Furthermore, based on previously published data, the new trawl when used in a twin rig system is expected to provide approximately 12% drag reduction compared to quad rig. The twin 'W' trawl system also has benefits over quad rig in that a reduced number of cod-end/By-catch Reduction Device units need to be installed and attended each tow.

  1. A dataset from bottom trawl survey around Taiwan.

    PubMed

    Shao, Kwang-Tsao; Lin, Jack; Wu, Chung-Han; Yeh, Hsin-Ming; Cheng, Tun-Yuan

    2012-01-01

    Bottom trawl fishery is one of the most important coastal fisheries in Taiwan both in production and economic values. However, its annual production started to decline due to overfishing since the 1980s. Its bycatch problem also damages the fishery resource seriously. Thus, the government banned the bottom fishery within 3 nautical miles along the shoreline in 1989. To evaluate the effectiveness of this policy, a four year survey was conducted from 2000-2003, in the waters around Taiwan and Penghu (Pescadore) Islands, one region each year respectively. All fish specimens collected from trawling were brought back to lab for identification, individual number count and body weight measurement. These raw data have been integrated and established in Taiwan Fish Database (http://fishdb.sinica.edu.tw). They have also been published through TaiBIF (http://taibif.tw), FishBase and GBIF (website see below). This dataset contains 631 fish species and 3,529 records, making it the most complete demersal fish fauna and their temporal and spatial distributional data on the soft marine habitat in Taiwan.

  2. Acoustic mirror effect increases prey detection distance in trawling bats

    NASA Astrophysics Data System (ADS)

    Siemers, Björn M.; Baur, Eric; Schnitzler, Hans-Ulrich

    2005-06-01

    Many different and phylogenetically distant species of bats forage for insects above water bodies and take insects from and close to the surface; the so-called ‘trawling behaviour’. Detection of surface-based prey by echolocation is facilitated by acoustically smooth backgrounds such as water surfaces that reflect sound impinging at an acute angle away from the bat and thereby render a prey object acoustically conspicuous. Previous measurements had shown that the echo amplitude of a target on a smooth surface is higher than that of the same target in mid-air, due to an acoustic mirror effect. In behavioural experiments with three pond bats (Myotis dasycneme), we tested the hypothesis that the maximum distances at which bats can detect prey are larger for prey on smooth surfaces than for the same prey in an airborne situation. We determined the moment of prey detection from a change in echolocation behaviour and measured the detection distance in 3D space from IR-video recordings using stereo-photogrammetry. The bats showed the predicted increase in detection distance for prey on smooth surfaces. The acoustic mirror effect therefore increases search efficiency and contributes to the acoustic advantages encountered by echolocating bats when foraging at low heights above smooth water surfaces. These acoustic advantages may have favoured the repeated evolution of trawling behaviour.

  3. Towards a trawling-affected sediment budget on the Galician shelf (NW Spain)

    NASA Astrophysics Data System (ADS)

    Oberle, F. J.; Hanebuth, T. J.

    2013-05-01

    This case study uses vessel monitoring data in conjunction with multiple sedimentological and geochemical proxies on sediment cores to quantify the effect of bottom trawling on a source-to-sink budget analysis of a late Holocene mid-shelf mudbelt. The long-term effect of bottom trawling on seafloor sediments is largely unknown and the existing studies are contradictive. This is particularly surprising as mud depocenters on shelves are of great economic and environmental interest because they represent areas where fishing and other ground disturbing activities have high impacts, and the associated ecosystems hold one of the highest biodiversity. The Galician Mudbelt, exemplary for many other mudbelts worldwide, is located on the open and narrow continental shelf of NW Iberia and is widely affected by chronic (continuous and intensive) commercial bottom trawling. In this study we present the results from 2.800 km of seismo-acoustic data used to calculate a high-resolution isopach map that represents the Late Holocene (< 5.3 cal ka BP) mud accumulation pattern on the shelf. In conjunction with sediment core data, we have calculated a sedimentary budget of this mudbelt and for the shelf sediment export for the Late Holocene. Quantifying trawling induced sediment disturbance to a mudbelt is difficult. We here present vessel monitoring data from one year 2011-2012 to quantify bottom trawling activity. Bottom trawling activity can be identified by filtering the vessel monitoring data by vessel type, vessel speed and geometry of the trawl path. The results from this show geographically detailed bottom trawling activities with varying local trawling intensities depending both on legal restrictions and bedrock geomorphology. In conjunction with this data, heavy metal sediment analysis (e. g. As, Zn, Cr, Pb) and isotope dating (e. g. Cs-137, Pb-210) will be evaluated in a next step for the suitability to calculate the depth of trawling induced sediment disturbance. From this

  4. What a drag: Quantifying the global impact of chronic bottom trawling on continental shelf sediment

    NASA Astrophysics Data System (ADS)

    Oberle, Ferdinand K. J.; Storlazzi, Curt D.; Hanebuth, Till J. J.

    2016-07-01

    Continental shelves worldwide are subject to intense bottom trawling that causes sediment to be resuspended. The widely used traditional concepts of modern sedimentary transport systems on the shelf rely only on estimates for naturally driven sediment resuspension such as through storm waves, bottom currents, and gravity-driven flows but they overlook a critical anthropogenic factor. The strong influence of bottom trawling on a source-to-sink sediment budget is explored on the NW Iberian shelf. Use of Automated Information System vessel tracking data provides for a high-resolution vessel track reconstruction and the accurate calculation of the spatial distribution of bottom trawling intensity and associated resuspended sediment load. The mean bottom trawling-induced resuspended sediment mass for the NW Iberian shelf is 13.50 Mt yr- 1, which leads to a six-fold increase in off-shelf sediment transport when compared to natural resuspension mechanisms. The source-to-sink budget analysis provides evidence that bottom trawling causes a rapid erosion of the fine sediment on human time scales. Combining global soft sediment distribution data of the shelves with worldwide bottom trawling intensity estimates we show that the bottom trawling-induced resuspended sediment mass amounts to approximately the same mass of all sediment entering the shelves through rivers. Spatial delineations between natural and anthropogenic sediment resuspension areas are presented to aid in marine management questions.

  5. What a drag: Quantifying the global impact of chronic bottom trawling on continental shelf sediment

    USGS Publications Warehouse

    Oberle, Ferdinand K.J.; Storlazzi, Curt; Hanebuth, Till J.J.

    2016-01-01

    Continental shelves worldwide are subject to intense bottom trawling that causes sediment to be resuspended. The widely used traditional concepts of modern sedimentary transport systems on the shelf rely only on estimates for naturally driven sediment resuspension such as through storm waves, bottom currents, and gravity-driven flows but they overlook a critical anthropogenic factor. The strong influence of bottom trawling on a source-to-sink sediment budget is explored on the NW Iberian shelf. Use of Automated Information System vessel tracking data provides for a high-resolution vessel track reconstruction and the accurate calculation of the spatial distribution of bottom trawling intensity and associated resuspended sediment load. The mean bottom trawling-induced resuspended sediment mass for the NW Iberian shelf is 13.50 Mt yr− 1, which leads to a six-fold increase in off-shelf sediment transport when compared to natural resuspension mechanisms. The source-to-sink budget analysis provides evidence that bottom trawling causes a rapid erosion of the fine sediment on human time scales. Combining global soft sediment distribution data of the shelves with worldwide bottom trawling intensity estimates we show that the bottom trawling-induced resuspended sediment mass amounts to approximately the same mass of all sediment entering the shelves through rivers. Spatial delineations between natural and anthropogenic sediment resuspension areas are presented to aid in marine management questions.

  6. Benthic microbial abundance and activities in an intensively trawled ecosystem (Thermaikos Gulf, Aegean Sea)

    NASA Astrophysics Data System (ADS)

    Polymenakou, Paraskevi N.; Pusceddu, Antonio; Tselepides, Anastasios; Polychronaki, Thalia; Giannakourou, Antonia; Fiordelmondo, Carla; Hatziyanni, Eleni; Danovaro, Roberto

    2005-12-01

    Abundance of benthic bacteria, heterotrophic nanoflagellates and ciliates, extracellular enzymatic activities, bacterial C production, C mineralisation and sediment community oxygen consumption rates were measured in the Thermaikos Gulf (Northeastern Mediterranean), before (September 2001), and during intense trawling activities (October 2001 and February 2002). The biochemical composition of sedimentary organic matter has revealed that bottom trawling had an effect on the trophic state of Thermaikos Gulf. Changes on the benthic microbial food web were also recorded, during the three sampling seasons. Even though trawling-induced sediment resuspension did not alter significantly the abundance of the microbial components, with the exception of the most impacted station, it determined changes regarding their relative importance. Thus, the ratios of bacterium to nanoflagellates and ciliate to nanoflagellates abundance increased in the trawled stations, causing a sudden increase in bacterial C production, in comparison to the non-trawled station. Four months later, the effects of trawling on the microbial food web were less evident, masked possibly by the drastic decrease in the water temperature. The results of the present work suggest that bottom trawling induces alteration of the sedimentological variables and can be considered as a factor affecting the function of the microbial food web in marine coastal ecosystems. These alterations cause faster mobilisation of organic C buried in the sediment and increase nutrient concentrations and availability in the system, thus inducing an effect that could lead to coastal eutrophication.

  7. Behaviour of fish by-catch in the mouth of a crustacean trawl.

    PubMed

    Queirolo, D; Gaete, E; Montenegro, I; Soriguer, M C; Erzini, K

    2012-06-01

    The behaviour of fish by-catch was recorded and characterized by in situ observations in the mouth of a crustacean trawl using an underwater camera system with artificial light, at depths between 106 and 461 m, along the central coast of Chile. The groups or species studied were rattails (family Macrouridae), Chilean hake Merluccius gayi gayi, sharks (orders Carcharhiniformes and Squaliformes), skates (family Rajidae), flatfishes (genus Hippoglossina) and small benthopelagic and demersal fishes (orders Osmeriformes, Stomiiformes, Gadiformes, Ophidiiformes and Perciformes). The fish behaviour was categorized in terms of (1) position in the water column, (2) initial orientation with respect to the trawl, (3) locomotion and (4) swimming speed with respect to the trawl. Rattails, sharks, skates and flatfishes were passive in response to the trawl and showed similar behavioural patterns, with most fishes observed sitting or touching the bottom with no swimming or other activity. Merluccius gayi gayi was the most active species, displaying a wide combination of behavioural responses when the trawl approached. This species showed several behavioural patterns, mainly characterized by swimming forward at variable speed. A fraction of small bentho-pelagic and demersal fishes also showed an active behaviour but always at lower speed than the trawl. The species-specific differences in behaviour in the mouth of the trawl suggest that improvements at the level of the footrope can be made to reduce by-catch, especially of passive species.

  8. Configuring the Mesh Size, Side Taper and Wing Depth of Penaeid Trawls to Reduce Environmental Impacts

    PubMed Central

    Broadhurst, Matt K.; Sterling, David J.; Millar, Russell B.

    2014-01-01

    The effects of reducing mesh size while concomitantly varying the side taper and wing depth of a generic penaeid-trawl body were investigated to improve engineering performance and minimize bycatch. Five trawl bodies (with the same codends) were tested across various environmental (e.g. depth and current) and biological (e.g. species and sizes) conditions. The first trawl body comprised 41-mm mesh and represented conventional designs (termed the ‘41 long deep-wing'), while the remaining trawl bodies were made from 32-mm mesh and differed only in their side tapers, and therefore length (i.e. 1N3B or ‘long’ and ∼28o to the tow direction vs 1N5B or ‘short’ and ∼35o) and wing depths (‘deep’–97 T vs ‘shallow’–60 T). There were incremental drag reductions (and therefore fuel savings – by up to 18 and 12% per h and ha trawled) associated with reducing twine area via either modification, and subsequently minimizing otter-board area in attempts to standardize spread. Side taper and wing depth had interactive and varied effects on species selectivity, but compared to the conventional 41 long deep-wing trawl, the 32 short shallow-wing trawl (i.e. the least twine area) reduced the total bycatch by 57% (attributed to more fish swimming forward and escaping). In most cases, all small-meshed trawls also caught more smaller school prawns Metapenaeus macleayi but to decrease this effect it should be possible to increase mesh size slightly, while still maintaining the above engineering benefits and species selectivity. The results support precisely optimizing mesh size as a precursor to any other anterior penaeid-trawl modifications designed to improve environmental performance. PMID:24911786

  9. Marine litter in bottom trawls off the Portuguese coast.

    PubMed

    Neves, Diogo; Sobral, Paula; Pereira, Tânia

    2015-10-15

    Benthic marine litter along the Portuguese coast, was recorded in 14 trips on stern trawlers covering a distance of 2117 km and an area of 56.2 km(2), average depth range 90-349 m. 2034 items of marine litter were registered, 76% were plastics and 38.6% were originated from fishing related activities. Plastic was present in all the trawls and had the highest average density of all litter categories, 50 items km(-2). The highest density of marine litter (178.9 ± 64.0 items km(-2)) was found in the proximity of the Tagus river mouth, probably related to the high population density in the Lisbon metropolitan area. This study highlights the need to raise fishermen awareness for the adoption of good environmental practices that will contribute to the reduction of marine litter. PMID:26231069

  10. The Kaidun Breccia Material Variety: New Clasts and Updated Hypothesis on a Space Trawl Origin

    NASA Astrophysics Data System (ADS)

    Ivanova, M. A.; Lorenz, C. A.; Ma, C.; Ivanov, A. V.

    2016-08-01

    We continue studying the Kaidun unique microbreccia and report results on investigation of newly discovered unusual clasts, discuss processes of their formation, and discuss a space trawl hypothesis of the origin of the Kaidun parent body.

  11. Vulnerability of individual fish to capture by trawling is influenced by capacity for anaerobic metabolism

    PubMed Central

    Killen, Shaun S.; Nati, Julie J. H.; Suski, Cory D.

    2015-01-01

    The harvest of animals by humans may constitute one of the strongest evolutionary forces affecting wild populations. Vulnerability to harvest varies among individuals within species according to behavioural phenotypes, but we lack fundamental information regarding the physiological mechanisms underlying harvest-induced selection. It is unknown, for example, what physiological traits make some individual fish more susceptible to capture by commercial fisheries. Active fishing methods such as trawling pursue fish during harvest attempts, causing fish to use both aerobic steady-state swimming and anaerobic burst-type swimming to evade capture. Using simulated trawling procedures with schools of wild minnows Phoxinus phoxinus, we investigate two key questions to the study of fisheries-induced evolution that have been impossible to address using large-scale trawls: (i) are some individuals within a fish shoal consistently more susceptible to capture by trawling than others?; and (ii) if so, is this related to individual differences in swimming performance and metabolism? Results provide the first evidence of repeatable variation in susceptibility to trawling that is strongly related to anaerobic capacity and swimming ability. Maximum aerobic swim speed was also negatively correlated with vulnerability to trawling. Standard metabolic rate was highest among fish that were least vulnerable to trawling, but this relationship probably arose through correlations with anaerobic capacity. These results indicate that vulnerability to trawling is linked to anaerobic swimming performance and metabolic demand, drawing parallels with factors influencing susceptibility to natural predators. Selection on these traits by fisheries could induce shifts in the fundamental physiological makeup and function of descendent populations. PMID:26246542

  12. Vulnerability of individual fish to capture by trawling is influenced by capacity for anaerobic metabolism.

    PubMed

    Killen, Shaun S; Nati, Julie J H; Suski, Cory D

    2015-08-22

    The harvest of animals by humans may constitute one of the strongest evolutionary forces affecting wild populations. Vulnerability to harvest varies among individuals within species according to behavioural phenotypes, but we lack fundamental information regarding the physiological mechanisms underlying harvest-induced selection. It is unknown, for example, what physiological traits make some individual fish more susceptible to capture by commercial fisheries. Active fishing methods such as trawling pursue fish during harvest attempts, causing fish to use both aerobic steady-state swimming and anaerobic burst-type swimming to evade capture. Using simulated trawling procedures with schools of wild minnows Phoxinus phoxinus, we investigate two key questions to the study of fisheries-induced evolution that have been impossible to address using large-scale trawls: (i) are some individuals within a fish shoal consistently more susceptible to capture by trawling than others?; and (ii) if so, is this related to individual differences in swimming performance and metabolism? Results provide the first evidence of repeatable variation in susceptibility to trawling that is strongly related to anaerobic capacity and swimming ability. Maximum aerobic swim speed was also negatively correlated with vulnerability to trawling. Standard metabolic rate was highest among fish that were least vulnerable to trawling, but this relationship probably arose through correlations with anaerobic capacity. These results indicate that vulnerability to trawling is linked to anaerobic swimming performance and metabolic demand, drawing parallels with factors influencing susceptibility to natural predators. Selection on these traits by fisheries could induce shifts in the fundamental physiological makeup and function of descendent populations.

  13. A transactional and collaborative approach to reducing effects of bottom trawling.

    PubMed

    Gleason, Mary; Feller, Erika M; Merrifield, Matt; Copps, Stephen; Fujita, Rod; Bell, Michael; Rienecke, Steve; Cook, Chuck

    2013-06-01

    Private-sector financial and legal transactions have long been used to protect terrestrial habitats and working landscapes, but less commonly to address critical threats in marine environments. Transferrable and marketable fishing privileges, including permits and quotas, make it possible to use private-sector transactions as conservation strategies to address some fishery management issues. Abating the effects of bottom trawling on the seafloor and bycatch and discard associated with the practice has proven challenging. On the Central Coast of California, The Nature Conservancy (TNC), Environmental Defense Fund, local fishers and local, state, and federal authorities worked collaboratively to protect large areas of the seafloor from bottom trawling for groundfish while addressing economic impacts of trawl closures. Contingent on the adoption of trawl-closure areas by a federal regulatory agency, TNC used private funds to purchase federal groundfish trawl permits and vessels from willing sellers. Trawl-closure areas were designed collaboratively by combining regional biological diversity and fisheries data with local fishers' knowledge. The private transactional strategy was designed to remedy some deficiencies in previous federal buyouts, to mitigate economic impacts from trawl closures, and to carefully align with a public regulatory process to protect "essential fish habitat" under the Magnuson-Stevens Fishery Conservation and Management Act. This collaborative effort protected 1.5 million ha (3.8 million acres) of seafloor, reduced trawl effort in the area by 50%, and set a precedent for collaborative partnerships between conservation and fishing interests. This is the first time a large conservation organization has taken an ownership position in a fishery and demonstrates how nongovernmental organizations can invest in fisheries to improve environmental and economic performance. PMID:23530985

  14. Integrating the provision of ecosystem services and trawl fisheries for the management of the marine environment.

    PubMed

    Muntadas, Alba; de Juan, Silvia; Demestre, Montserrat

    2015-02-15

    The species interaction and their biological traits (BT) determine the function of benthic communities and, hence, the delivery of ecosystem services. Therefore, disturbance of benthic communities by trawling may compromise ecosystem service delivery, including fisheries' catches. In this work, we explore 1) the impact of trawling activities on benthic functional components (after the BTA approach) and 2) how trawling impact may affect the ecosystem services delivered by benthic communities. To this aim, we assessed the provision of ecosystem services by adopting the concept of Ecosystem Service Providers (ESP), i.e. ecological units that perform ecosystem functions that will ultimately deliver ecosystem services. We studied thirteen sites subjected to different levels of fishing effort in the Mediterranean. From a range of environmental variables included in the study, we found ESPs to be mainly affected by fishing effort and grain size. Our results suggested that habitat type has significant effects on the distribution of ESPs and this natural variability influences ESP response to trawling at a specific site. In order to summarize the complex relationships between human uses, ecosystem components and the demand for ecosystem services in trawling grounds, we adapted a DPSIR (Drivers-Pressures-State Change-Impact-Response) framework to the study area, emphasizing the role of society as Drivers of change and actors demanding management Responses. This integrative framework aims to inform managers about the interactions between all the elements involved in the management of trawling grounds, highlighting the need for an integrated approach in order to ensure ecosystem service provision. PMID:25433378

  15. Chronic and intensive bottom trawling impairs deep-sea biodiversity and ecosystem functioning

    PubMed Central

    Pusceddu, Antonio; Bianchelli, Silvia; Martín, Jacobo; Puig, Pere; Palanques, Albert; Masqué, Pere; Danovaro, Roberto

    2014-01-01

    Bottom trawling has many impacts on marine ecosystems, including seafood stock impoverishment, benthos mortality, and sediment resuspension. Historical records of this fishing practice date back to the mid-1300s. Trawling became a widespread practice in the late 19th century, and it is now progressively expanding to greater depths, with the concerns about its sustainability that emerged during the first half of the 20th century now increasing. We show here that compared with untrawled areas, chronically trawled sediments along the continental slope of the north-western Mediterranean Sea are characterized by significant decreases in organic matter content (up to 52%), slower organic carbon turnover (ca. 37%), and reduced meiofauna abundance (80%), biodiversity (50%), and nematode species richness (25%). We estimate that the organic carbon removed daily by trawling in the region under scrutiny represents as much as 60–100% of the input flux. We anticipate that such an impact is causing the degradation of deep-sea sedimentary habitats and an infaunal depauperation. With deep-sea trawling currently conducted along most continental margins, we conclude that trawling represents a major threat to the deep seafloor ecosystem at the global scale. PMID:24843122

  16. Impacts of crowding, trawl duration and air exposure on the physiology of stingarees (family: Urolophidae)

    PubMed Central

    Heard, Matthew; Van Rijn, Jason A.; Reina, Richard D.; Huveneers, Charlie

    2014-01-01

    Research on physiological stress and post-capture mortality of threatened species caught as bycatch is critical for the management of fisheries. The present study used laboratory simulations to examine the physiological stress response of sparsely spotted stingarees (Urolophus paucimaculatus) subjected to one of four different trawl treatments, including two different trawl durations as well as ancillary stressors of either air exposure or crowding. Physiological indicators (plasma lactate, urea, potassium and glucose) and changes in white blood cell counts were measured from blood samples taken throughout a 48 h recovery period. Mortality was low throughout this study (15% overall) and occurred only after >48 h following air exposure, crowding and 3 h trawl simulations. Plasma lactate, glucose and urea concentrations were identified as potential indicators of physiological stress, while plasma potassium and white blood cell counts were too variable to identify changes that would be expected to have biological consequences for stingarees. The characterization of the temporal profiles of physiological indicators facilitates a more accurate assessment of secondary stressors by identifying the best timing to sample stingaree blood when investigating post-capture stress physiology. High levels of lactate, increasing glucose and depressed urea were all recorded in response to air exposure following trawling, indicating that this is the primary source of stress in stingarees caught in trawling operations. These findings highlight the importance of improving bycatch sorting procedures to reduce the time out of the water for trawl-caught stingarees. PMID:27293661

  17. Chronic and intensive bottom trawling impairs deep-sea biodiversity and ecosystem functioning.

    PubMed

    Pusceddu, Antonio; Bianchelli, Silvia; Martín, Jacobo; Puig, Pere; Palanques, Albert; Masqué, Pere; Danovaro, Roberto

    2014-06-17

    Bottom trawling has many impacts on marine ecosystems, including seafood stock impoverishment, benthos mortality, and sediment resuspension. Historical records of this fishing practice date back to the mid-1300s. Trawling became a widespread practice in the late 19th century, and it is now progressively expanding to greater depths, with the concerns about its sustainability that emerged during the first half of the 20th century now increasing. We show here that compared with untrawled areas, chronically trawled sediments along the continental slope of the north-western Mediterranean Sea are characterized by significant decreases in organic matter content (up to 52%), slower organic carbon turnover (ca. 37%), and reduced meiofauna abundance (80%), biodiversity (50%), and nematode species richness (25%). We estimate that the organic carbon removed daily by trawling in the region under scrutiny represents as much as 60-100% of the input flux. We anticipate that such an impact is causing the degradation of deep-sea sedimentary habitats and an infaunal depauperation. With deep-sea trawling currently conducted along most continental margins, we conclude that trawling represents a major threat to the deep seafloor ecosystem at the global scale.

  18. Integrating the provision of ecosystem services and trawl fisheries for the management of the marine environment.

    PubMed

    Muntadas, Alba; de Juan, Silvia; Demestre, Montserrat

    2015-02-15

    The species interaction and their biological traits (BT) determine the function of benthic communities and, hence, the delivery of ecosystem services. Therefore, disturbance of benthic communities by trawling may compromise ecosystem service delivery, including fisheries' catches. In this work, we explore 1) the impact of trawling activities on benthic functional components (after the BTA approach) and 2) how trawling impact may affect the ecosystem services delivered by benthic communities. To this aim, we assessed the provision of ecosystem services by adopting the concept of Ecosystem Service Providers (ESP), i.e. ecological units that perform ecosystem functions that will ultimately deliver ecosystem services. We studied thirteen sites subjected to different levels of fishing effort in the Mediterranean. From a range of environmental variables included in the study, we found ESPs to be mainly affected by fishing effort and grain size. Our results suggested that habitat type has significant effects on the distribution of ESPs and this natural variability influences ESP response to trawling at a specific site. In order to summarize the complex relationships between human uses, ecosystem components and the demand for ecosystem services in trawling grounds, we adapted a DPSIR (Drivers-Pressures-State Change-Impact-Response) framework to the study area, emphasizing the role of society as Drivers of change and actors demanding management Responses. This integrative framework aims to inform managers about the interactions between all the elements involved in the management of trawling grounds, highlighting the need for an integrated approach in order to ensure ecosystem service provision.

  19. Patterns of Dolphin Bycatch in a North-Western Australian Trawl Fishery

    PubMed Central

    Allen, Simon J.; Tyne, Julian A.; Kobryn, Halina T.; Bejder, Lars; Pollock, Kenneth H.; Loneragan, Neil R.

    2014-01-01

    The bycatch of small cetaceans in commercial fisheries is a global wildlife management problem. We used data from skippers' logbooks and independent observers to assess common bottlenose dolphin (Tursiops truncatus) bycatch patterns between 2003 and 2009 in the Pilbara Trawl Fishery, Western Australia. Both datasets indicated that dolphins were caught in all fishery areas, across all depths and throughout the year. Over the entire datasets, observer reported bycatch rates (n = 52 dolphins in 4,124 trawls, or 12.6 dolphins/1,000 trawls) were ca. double those reported by skippers (n = 180 dolphins in 27,904 trawls, or 6.5 dolphins/1,000 trawls). Generalised Linear Models based on observer data, which better explained the variation in dolphin bycatch, indicated that the most significant predictors of dolphin catch were: (1) vessel - one trawl vessel caught significantly more dolphins than three others assessed; (2) time of day – the lowest dolphin bycatch rates were between 00:00 and 05:59; and (3) whether nets included bycatch reduction devices (BRDs) - the rate was reduced by ca. 45%, from 18.8 to 10.3 dolphins/1,000 trawls, after their introduction. These results indicated that differences among vessels (or skippers' trawling techniques) and dolphin behavior (a diurnal pattern) influenced the rates of dolphin capture; and that spatial or seasonal adjustments to trawling effort would be unlikely to significantly reduce dolphin bycatch. Recent skipper's logbook data show that dolphin bycatch rates have not declined since those reported in 2006, when BRDs were introduced across the fishery. Modified BRDs, with top-opening escape hatches from which dolphins might escape to the surface, may be a more effective means of further reducing dolphin bycatch. The vulnerability of this dolphin population to trawling-related mortality cannot be assessed in the absence of an ongoing observer program and without information on trawler-associated dolphin community size

  20. Patterns of dolphin bycatch in a north-western Australian trawl fishery.

    PubMed

    Allen, Simon J; Tyne, Julian A; Kobryn, Halina T; Bejder, Lars; Pollock, Kenneth H; Loneragan, Neil R

    2014-01-01

    The bycatch of small cetaceans in commercial fisheries is a global wildlife management problem. We used data from skippers' logbooks and independent observers to assess common bottlenose dolphin (Tursiops truncatus) bycatch patterns between 2003 and 2009 in the Pilbara Trawl Fishery, Western Australia. Both datasets indicated that dolphins were caught in all fishery areas, across all depths and throughout the year. Over the entire datasets, observer reported bycatch rates (n = 52 dolphins in 4,124 trawls, or 12.6 dolphins/1,000 trawls) were ca. double those reported by skippers (n = 180 dolphins in 27,904 trawls, or 6.5 dolphins/1,000 trawls). Generalised Linear Models based on observer data, which better explained the variation in dolphin bycatch, indicated that the most significant predictors of dolphin catch were: (1) vessel--one trawl vessel caught significantly more dolphins than three others assessed; (2) time of day--the lowest dolphin bycatch rates were between 00:00 and 05:59; and (3) whether nets included bycatch reduction devices (BRDs)--the rate was reduced by ca. 45%, from 18.8 to 10.3 dolphins/1,000 trawls, after their introduction. These results indicated that differences among vessels (or skippers' trawling techniques) and dolphin behavior (a diurnal pattern) influenced the rates of dolphin capture; and that spatial or seasonal adjustments to trawling effort would be unlikely to significantly reduce dolphin bycatch. Recent skipper's logbook data show that dolphin bycatch rates have not declined since those reported in 2006, when BRDs were introduced across the fishery. Modified BRDs, with top-opening escape hatches from which dolphins might escape to the surface, may be a more effective means of further reducing dolphin bycatch. The vulnerability of this dolphin population to trawling-related mortality cannot be assessed in the absence of an ongoing observer program and without information on trawler-associated dolphin community size

  1. Abundance analyses of mega-epibenthic species on the Dogger Bank (North Sea): Diurnal rhythms and short-term effects caused by repeated trawling, observed at a permanent station

    NASA Astrophysics Data System (ADS)

    Sonnewald, Moritz; Türkay, Michael

    2012-10-01

    Within our long term monitoring programme at the Dogger Bank (North Sea), a permanent station at the north-eastern tail end of the Dogger Bank was sampled yearly with a 2 m beam trawl since the year 1994. The sampling procedure was repeated every 3 h within a timeframe of 48 h. All species above a size of 1 cm were recorded quantitatively. The analysis of the dataset, consisting of thirteen sampling years, revealed rhythmic abundance fluctuations of one crustacean and two fish species, depending on the time of day. In order to check the accuracy of the results obtained, we further analysed the dataset for short-term effects of continuous trawling at the same track on the abundance of individual species. No direct effect on the abundance of particular species was detected, but the analysis revealed a periodic fluctuation of the mean number of individuals and the mean catch volume.

  2. Reverse optical trawling for synaptic connections in situ.

    PubMed

    Sasaki, Takuya; Minamisawa, Genki; Takahashi, Naoya; Matsuki, Norio; Ikegaya, Yuji

    2009-07-01

    We introduce a new method to unveil the network connectivity among dozens of neurons in brain slice preparations. While synaptic inputs were whole cell recorded from given postsynaptic neurons, the spatiotemporal firing patterns of presynaptic neuron candidates were monitored en masse with functional multineuron calcium imaging, an optical technique that records action potential-evoked somatic calcium transients with single-cell resolution. By statistically screening the neurons that exhibited calcium transients immediately before the postsynaptic inputs, we identified the presynaptic cells that made synaptic connections onto the patch-clamped neurons. To enhance the detection power, we devised the following points: 1) [K+]e was lowered and [Ca2+]e and [Mg2+]e were elevated, to reduce background synaptic activity and minimize the failure rate of synaptic transmission; and 2) a small fraction of presynaptic neurons was specifically activated by glutamate applied iontophoretically through a glass pipette that was moved to survey the presynaptic network of interest ("trawling"). Then we could theoretically detect 96% of presynaptic neurons activated in the imaged regions with a 1% false-positive error rate. This on-line probing technique would be a promising tool in the study of the wiring topography of neuronal circuits. PMID:19386760

  3. Deciphering the lithological consequences of bottom trawling to sedimentary habitats on the shelf

    NASA Astrophysics Data System (ADS)

    Oberle, Ferdinand K. J.; Swarzenski, Peter W.; Reddy, Christopher M.; Nelson, Robert K.; Baasch, Benjamin; Hanebuth, Till J. J.

    2016-07-01

    Widespread bottom trawling on the NW Iberian shelf causes chronic sediment and habitat disturbance. The few studies that have investigated vessel-modified sedimentary-structure and texture of the seabed have typically classified their results as being either impacted by trawling or not. This study indicates that bottom trawling can result in a sequence of vastly different effects to the lithology of seabed sediment, which have in turn different ecological consequences. Here, we combined very high-resolution spatial bottom-trawling data with sedimentological (grain size, porosity) and geochemical datasets (excess 210Pb, 3D petroleum fingerprinting) to study sediment disturbance, including sorting and mixing. Our results were used to develop five conceptual disturbance scenarios: minimal seabed effects, sediment overturning, complete sediment mixing, sediment grading and layering, and loss of sediment. Considering that bottom trawling is a widespread and growing global fishing technique, such impacts need to be considered in the management of habitat conservation as well as in the reconstruction of late Holocene climate history from shallow-water deposits, not just on the NW Iberian shelf, but also globally.

  4. Effects of trawling on the diets of common demersal fish by-catch of a tropical prawn trawl fishery.

    PubMed

    Dell, Q; Griffiths, S P; Tonks, M L; Rochester, W A; Miller, M J; Duggan, M A; van der Velde, T D; Pillans, R D; Coman, G J; Bustamante, R H; Milton, D A

    2013-03-01

    The ecological effect of prawn trawling on the benthos of the Gulf of Carpentaria, northern Australia, was investigated by examining stomach contents of common demersal fishes incidentally caught as by-catch in the fishery. Fishes were collected from high and low fishing intensity sites in three regions based on vessel monitoring system data. The diets of eight species of benthic fish predators were compared between regions and fishing intensities. A regional effect on diet was evident for seven species. Only one generalist species had no significant difference in diet among the three regions. For the comparisons within each region, five predator species had significantly different diet between high and low fishing intensities in at least one region. Across the three regions, high fishing intensity sites had predators that consumed a greater biomass of crustaceans, molluscs and echinoderms. At low fishing intensity sites, predators had diets comprising a greater biomass of cnidarians and teleosts, and a different assemblage of molluscs, crustaceans and fishes. These changes in diet suggest that there may have been a shift in the structure of the benthic community following intensive fishing. Analysis of predator diets is a useful tool to help identify changes in the benthic community composition after exposure to fishing. This study also provided valuable diet information on a range of abundant generalist benthic predators to improve the ecosystem modelling tools needed to support ecosystem-based fisheries management.

  5. Trawling disturbance on the isotopic signature of a structure-building species, the sea urchin Gracilechinus acutus (Lamarck, 1816)

    NASA Astrophysics Data System (ADS)

    González-Irusta, José M.; Preciado, Izaskun; López-López, Lucia; Punzón, Antonio; Cartes, Joan E.; Serrano, Alberto

    2014-08-01

    Bottom trawling is one of the main sources of anthropogenic disturbance in benthic habitats with important direct and indirect effects on the ecosystem functional diversity. In this study, the effect of this impact on a structure-building species, the sea urchin Gracilechinus acutus, was studied in the Central Cantabrian Sea (southern Bay of Biscay) comparing its isotopic signature and additional population descriptors across different trawling pressures. Trawling disturbance had a significant effect on the studied descriptors. In trawling areas, this urchin showed significantly lower values of biomass and mean size and significantly higher values of fullness index. Moreover, the trawling disturbance effect was also significant in the isotopic signature of G. acutus. Urchins inhabiting untrawled areas showed significant lower values of δ15N than urchins dwelling areas under trawling pressure. The urchins' isotopic enrichment increased along the species ontogeny regardless of the trawling effort level. Stable isotope analyses are a suitable tool to detect trawling disturbance on the trophic pathways but do not suffice to explain these changes, especially if there is a lack of baseline information.

  6. SUMMER FISH COMMUNITY OF THE COASTAL NORTHERN GULF OF MEXICO: CHARACTGERIZATION OF A LARGE-SCALE TRAWL SURVEY

    EPA Science Inventory

    This paper summarizes the trawled fish assemblage collected during 1992 - 1994 at 119 locations in the northern Gulf of Mexico. The 367 collection sites were located adjacent to five states and represented seven estuarine categories. Fish were collected using an otter trawl durin...

  7. 77 FR 19564 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-02

    ... established by the final 2012 and 2013 harvest specifications for groundfish of the GOA (77 FR 15194, March 14... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Central Regulatory Area of... for Pacific cod by catcher vessels (CVs) using trawl gear in the Central Regulatory Area of the...

  8. 77 FR 23159 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-18

    ... harvest specifications for groundfish in the BSAI (77 FR 10669, February 23, 2012). In accordance with Sec... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Bering Sea and Aleutian... for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian Islands...

  9. 76 FR 20891 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-14

    ... April 4, 2011 (76 FR 18663, April 5, 2011). As of April 6, 2011, NMFS has determined that approximately... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Bering Sea and Aleutian... directed fishing for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian...

  10. 77 FR 19147 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-03-30

    ... February 29, 2012 (77 FR 13013, March 5, 2012). As of March 21, 2012, NMFS has determined that... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Bering Sea and Aleutian... directed fishing for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian...

  11. 76 FR 18663 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-05

    ... harvest specifications for groundfish in the BSAI (76 FR 11139, March 1, 2011). In accordance with Sec... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Bering Sea and Aleutian... for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian Islands...

  12. 75 FR 16359 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-01

    ... harvest specifications for groundfish in the BSAI (75 FR 11788, March 12, 2010). In accordance with Sec... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Bering Sea and Aleutian... for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian Islands...

  13. 75 FR 56017 - Fisheries of the Exclusive Economic Zone Off Alaska; Shallow-Water Species by Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-15

    ... under Sec. 679.21(d)(7)(i) on September 3, 2010 (75 FR 54290, September 7, 2010). NMFS has determined... Economic Zone Off Alaska; Shallow- Water Species by Vessels Using Trawl Gear in the Gulf of Alaska AGENCY...-water species by vessels using trawl gear in the Gulf of Alaska (GOA). This action is necessary to...

  14. 76 FR 22057 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-20

    ... April 14, 2011 (76 FR 20891). As of April 13, 2011, NMFS has determined that approximately 2,000 metric... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Bering Sea and Aleutian... directed fishing for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian...

  15. 77 FR 13013 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-03-05

    ... specifications for groundfish in the BSAI (77 FR 10669, February 23, 2012). In accordance with Sec. 679.20(d)(1... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Bering Sea and Aleutian... for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian Islands...

  16. 78 FR 15643 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-12

    ... and 2014 harvest specifications for groundfish in the BSAI (78 FR 13813, March 1, 2013). In accordance... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Bering Sea and Aleutian... for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian Islands...

  17. 76 FR 17569 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-03-30

    ... harvest specifications for groundfish in the BSAI (76 FR 11139, March 1, 2011). In accordance with Sec... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Bering Sea and Aleutian... for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian Islands...

  18. 78 FR 17340 - Control Date for Qualifying Landings History in the Western Gulf of Alaska Trawl Groundfish...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-21

    ...; 63 FR 52642). Over the past few years, the Council has recommended amendments to the FMP to reduce... approved, Chinook PSC limits in the GOA pollock (Theragra chalcogramma) trawl fisheries (77 FR 42629, July... Landings History in the Western Gulf of Alaska Trawl Groundfish Fisheries AGENCY: National Marine...

  19. Trawling bats exploit an echo-acoustic ground effect

    PubMed Central

    Zsebok, Sandor; Kroll, Ferdinand; Heinrich, Melina; Genzel, Daria; Siemers, Björn M.; Wiegrebe, Lutz

    2013-01-01

    A water surface acts not only as an optic mirror but also as an acoustic mirror. Echolocation calls emitted by bats at low heights above water are reflected away from the bat, and hence the background clutter is reduced. Moreover, targets on the surface create an enhanced echo. Here, we formally quantified the effect of the surface and target height on both target detection and -discrimination in a combined laboratory and field approach with Myotis daubentonii. In a two-alternative, forced-choice paradigm, the bats had to detect a mealworm and discriminate it from an inedible dummy (20 mm PVC disc). Psychophysical performance was measured as a function of height above either smooth surfaces (water or PVC) or above a clutter surface (artificial grass). At low heights above the clutter surface (10, 20, or 35 cm), the bats' detection performance was worse than above a smooth surface. At a height of 50 cm, the surface structure had no influence on target detection. Above the clutter surface, also target discrimination was significantly impaired with decreasing target height. A detailed analysis of the bats' echolocation calls during target approach shows that above the clutter surface, the bats produce calls with significantly higher peak frequency. Flight-path reconstruction revealed that the bats attacked an target from below over water but from above over a clutter surface. These results are consistent with the hypothesis that trawling bats exploit an echo-acoustic ground effect, in terms of a spatio-temporal integration of direct reflections with indirect reflections from the water surface, to optimize prey detection and -discrimination not only for prey on the water but also for some range above. PMID:23576990

  20. Evaluating the Effect of Bottom Trawls in Pamlico River, North Carolina

    NASA Technical Reports Server (NTRS)

    Corbett, D. Reide; West, Terry; Clough, Lisa; Frank, James; Calfee, Worth

    2003-01-01

    The objective of this study is to evaluate and quantify the amount of sediment resuspension on shallow estuarine systems, with specific comparisons between natural and trawling-induced events. This aids in the assessment of water quality and sediment processes on a specific coastal system of North Carolina, providing a basis for future studies on other shallow estuarine ecosystems. Categorizing these sediment processes into distinct individual units (e.g. natural vs. anthropogenic) is an important component toward fully realizing proper management of our coastal habitats. Heavy trawling activity along North Carolina s coast is one of the major obstacles in management plans. Therefore, it is imperative to quantify the effects of trawling to gain a more specific understanding of the human impact on estuaries.

  1. Trawling-induced alterations of deep-sea sediment accumulation rates during the Anthropocene

    NASA Astrophysics Data System (ADS)

    Puig, P.; Paradis, S.; Masque, P.; Martin, J.; Juan, X.; Palanques, A.

    2015-12-01

    Commercial bottom trawling causes direct physical disturbance of the marine sedimentary environments by scraping and ploughing the seabed, generating periodic resuspension of surface sediments. However, the quantification of the sediment that is removed by trawling and exported across the continental margin remains largely unaddressed, and the preservation of the signal of such impacts in the geological record have been mostly overlooked. The analysis of sediment cores collected along the Catalan margin (NW Mediterranean) has allowed evaluating the contribution of this anthropogenic activity to the present-day sediment dynamics. Sediment cores at intensively trawled sites are characterized by over-consolidated sediments with lower 210Pb surface concentrations and inventories that indicate widespread erosion of recent sedimentary deposits. In turn, combined 210Pb and 137Cs chronologies indicate a significant increase of sediment accumulation rates within submarine canyon environments since the 1970s, coincidently with a strong impulse in the industrialization of the trawling fleets of this region. Two sampling sites that exhibited high sediment accumulation rates (0.6-0.7 cm/y) were reoccupied 1-2 decades after the first studies and revealed a second and even larger increase of sediment accumulation rates (>2 cm/y) occurring at the beginning of the XXI century. This recent change has been attributed to a preferential displacement of the trawling fleet towards fishing grounds surrounding submarine canyons and, also, to technical improvements in trawling vessels, presumably related to financial subsidies provided to the fishing sector. The alteration of sediment accumulation rates described in this continental margin may occur in many regions of the World's oceans given the wide geographical distribution of this human activity, and therefore, it could represent a potential marker of the Anthropocene in deep-sea environments.

  2. Technical Reliability Assessment of the Actigraph GT1M Accelerometer

    ERIC Educational Resources Information Center

    Silva, Pedro; Mota, Jorge; Esliger, Dale; Welk, Gregory

    2010-01-01

    The purpose of this study was to determine the reliability of the Actigraph GT1M (Pensacola, FL, USA) accelerometer activity count and step functions. Fifty GT1M accelerometers were initialized to collect simultaneous acceleration counts and steps data using 15-sec epochs. All reliability testing was completed using a mechanical shaker plate to…

  3. 50 CFR Table 51 to Part 679 - Modified Gear Trawl Zone

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Modified Gear Trawl Zone 51 Table 51 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE OFF ALASKA Pt. 679, Table 51 Table 51 to Part...

  4. 50 CFR Figure 6 to Part 223 - TED Extension in Summer Flounder Trawl

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 9 2011-10-01 2011-10-01 false TED Extension in Summer Flounder Trawl 6 Figure 6 to Part 223 Wildlife and Fisheries NATIONAL MARINE FISHERIES SERVICE, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE MARINE MAMMALS THREATENED MARINE AND ANADROMOUS SPECIES...

  5. 50 CFR Figure 6 to Part 223 - TED Extension in Summer Flounder Trawl

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 10 2012-10-01 2012-10-01 false TED Extension in Summer Flounder Trawl 6 Figure 6 to Part 223 Wildlife and Fisheries NATIONAL MARINE FISHERIES SERVICE, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE MARINE MAMMALS THREATENED MARINE AND ANADROMOUS SPECIES...

  6. 50 CFR Figure 1 to Part 660... - Diagram of Selective Flatfish Trawl

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Diagram of Selective Flatfish Trawl 1 Figure 1 to Part 660, Subpart D Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST...

  7. 77 FR 29955 - Fisheries Off West Coast States; Pacific Coast Groundfish Fishery Management Plan; Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-05-21

    ... critical habitat: Sei whales (Balaenoptera borealis); North Pacific Right whales (Eubalaena japonica); Blue... rationalization program for the Pacific coast groundfish fishery's trawl fleet (see 75 FR 78344; Dec. 15, 2010... ANPR on April 4, 2012 (77 FR 20337) that, among other things, announced the court's order, the...

  8. 78 FR 72 - Fisheries Off West Coast States; Pacific Coast Groundfish Fishery Management Plan; Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-02

    ... coast groundfish fishery's trawl fleet (see 75 FR 78344; Dec. 15, 2010). The program was adopted in 2010... follow. NMFS published the ANPR on April 4, 2012 (77 FR 20337), which, among other things, announced the... 21, 2012 (77 FR 29955), with the final rule published on August 1, 2012 (77 FR 45508). RAW 1...

  9. 50 CFR Figure 1 to Part 660... - Diagram of Selective Flatfish Trawl

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Diagram of Selective Flatfish Trawl 1 Figure 1 to Part 660, Subpart D Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL... Pt. 660, Subpt. D, Fig. 1 Figure 1 to Part 660, Subpart D—Diagram of Selective Flatfish...

  10. 50 CFR Figure 1 to Part 660... - Diagram of Selective Flatfish Trawl

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Diagram of Selective Flatfish Trawl 1 Figure 1 to Part 660, Subpart D Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL... Pt. 660, Subpt. D, Fig. 1 Figure 1 to Part 660, Subpart D—Diagram of Selective Flatfish...

  11. 50 CFR Figure 1 to Part 660... - Diagram of Selective Flatfish Trawl

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Diagram of Selective Flatfish Trawl 1 Figure 1 to Part 660, Subpart D Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL... Pt. 660, Subpt. D, Fig. 1 Figure 1 to Part 660, Subpart D—Diagram of Selective Flatfish...

  12. 50 CFR Figure 1 to Part 660... - Diagram of Selective Flatfish Trawl

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Diagram of Selective Flatfish Trawl 1 Figure 1 to Part 660, Subpart D Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL... Pt. 660, Subpt. D, Fig. 1 Figure 1 to Part 660, Subpart D—Diagram of Selective Flatfish...

  13. 50 CFR 660.113 - Trawl fishery-recordkeeping and reporting.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Trawl fishery-recordkeeping and reporting. 660.113 Section 660.113 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry...

  14. 50 CFR 660.114 - Trawl fishery-economic data collection program.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Trawl fishery-economic data collection program. 660.114 Section 660.114 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry...

  15. 50 CFR 660.114 - Trawl fishery-economic data collection program.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Trawl fishery-economic data collection program. 660.114 Section 660.114 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry...

  16. 50 CFR 660.113 - Trawl fishery-recordkeeping and reporting.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Trawl fishery-recordkeeping and reporting. 660.113 Section 660.113 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry...

  17. 50 CFR 660.113 - Trawl fishery-recordkeeping and reporting.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Trawl fishery-recordkeeping and reporting. 660.113 Section 660.113 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry...

  18. 50 CFR 660.113 - Trawl fishery-recordkeeping and reporting.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Trawl fishery-recordkeeping and reporting. 660.113 Section 660.113 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry...

  19. 50 CFR 622.25 - Exemptions for the Gulf groundfish trawl fishery.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 12 2013-10-01 2013-10-01 false Exemptions for the Gulf groundfish trawl fishery. 622.25 Section 622.25 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE FISHERIES OF THE CARIBBEAN, GULF OF MEXICO, AND SOUTH ATLANTIC Reef Fish Resources...

  20. 50 CFR 660.114 - Trawl fishery-economic data collection program.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Trawl fishery-economic data collection program. 660.114 Section 660.114 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry...

  1. 50 CFR 660.114 - Trawl fishery-economic data collection program.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Trawl fishery-economic data collection program. 660.114 Section 660.114 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry...

  2. 50 CFR 660.113 - Trawl fishery-recordkeeping and reporting.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Trawl fishery-recordkeeping and reporting. 660.113 Section 660.113 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry...

  3. 50 CFR Figure 12 to Part 679 - Bristol Bay Trawl Closure Area

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Bristol Bay Trawl Closure Area 12 Figure 12 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE...

  4. Evaluating ecosystem-based management options: Effects of trawling in Torres Strait, Australia

    NASA Astrophysics Data System (ADS)

    Ellis, Nick; Pantus, Francis; Welna, Andrzej; Butler, Alan

    2008-09-01

    A suite of management options for a prawn trawl fishery in Torres Strait, Australia was assessed for impacts on the benthic fauna using a dynamic management strategy evaluation approach. The specification of the management options was gained through consultation with stakeholders. Data for the model was drawn from several sources: the fleet data from fishery logbooks and satellite vessel monitoring systems, benthic depletion rates from trawl-down experiments, benthic recovery rates from post-experiment recovery monitoring studies, and benthic distribution from large-scale benthic surveys. Although there were large uncertainties in the resulting indicators, robust measures relevant to management were obtained by taking ratios relative to the status quo. The management control with the biggest effect was total effort; reducing trawl effort always led to increases in benthic faunal density of up to 10%. Spatial closures had a smaller benefit of up to 2%. The effect of closing a set of buffer zones around reefs to trawling was indistinguishable from the status quo option. Closing a larger area, however, was largely beneficial especially for sea cucumbers. When the spatial distributions of fauna prior to fishing were accounted for, fauna with distributions positively correlated with effort improved relative to those negatively correlated. The reduction in prawn catch under effort reduction scenarios could be ameliorated by introducing temporal closures over the full-moon period.

  5. 75 FR 73979 - Fisheries of the Northeastern United States; Discard Provision for Herring Midwater Trawl Vessels...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-11-30

    ... INFORMATION: Background On September 4, 2009, NMFS published a proposed rule (74 FR 45798) to implement... bycatch in the midwater trawl fishery. A final rule was published on November 2, 2009 (74 FR 56562), that... by the observer. The regulations implemented by the November 2, 2009, rule (74 FR 56562) provided...

  6. Use of a fishery-independent trawl survey to evaluate distribution patterns of subadult sharks in Georgia

    USGS Publications Warehouse

    Belcher, C.N.; Jennings, Cecil A.

    2009-01-01

    We investigated the utility of a fishery-independent trawl survey for assessing a potential multispecies shark nursery in Georgia's nearshore and inshore waters. A total of 234 subadult sharks from six species were captured during 85 of 216 trawls. Catch rates and size distributions for subadult sharks and the ratio of neonates to juveniles were consistent among areas. The highest concentrations of subadult sharks occurred in creeks and sounds. Species composition varied among areas. The Atlantic sharpnose shark Rhizoprionodon terraenovae was the most abundant species in sound and nearshore stations, whereas the bonnethead Sphyrna tiburo was the most abundant species in creeks. The aggregate of other species occurred with higher frequency in the sounds and nearshore. Sampling characteristics of the trawl survey were compared with those from a fishery-independent longline survey of subadult sharks to assess the similarity of the two gears. A total of 193 subadult sharks from seven species were captured during 57 of 96 longline sets, whereas 52 subadults from four species were captured during 20 of 48 trawls. Selectivity and efficiency differed between the two gears. The trawl had lower catch rates, caught smaller sharks, and encountered a different suite of species than the longline. General seasonal trends in relative abundance also differed between the two gears; the longline showed an increasing trend in abundance, whereas the trawl showed a stable trend. Although trawls were not found to be efficient for sampling subadult sharks from most species, they can be a useful source of supplemental data.

  7. Factors affecting bottom trawl catches: Implications for monitoring the fishes of Lake Superior

    USGS Publications Warehouse

    Yule, D.L.; Adams, J.V.; Stockwell, J.D.; Gorman, O.T.

    2008-01-01

    An annual daytime bottom trawl survey of the Lake Superior fish community designed in 1978 does not adequately assess the entire community. Whereas recent studies have recommended that pelagic species be surveyed with a combination of acoustic and midwater trawling methods (AC-MT), we used bottom trawling to study the effects of depth, diel period, and season on biomass estimates and the sizes of bottom-oriented species. Day and night bottom trawl samples were collected within 48 h at three depths (30, 60, and 120 m) at a Lake Superior site during eight sampling periods that included two seasons each year (early summer and late summer to early fall) for 2 years (2004 and 2005). Depth significantly affected the biomass of seven of the eight species analyzed, while diel period affected the biomass of six species. For most species, average biomass levels were higher at night. The effect of season on biomass was comparatively low (three species were significantly affected). Depth significantly affected the sizes of six bottom-oriented species, as the average length of most species increased with depth. The effects of diel period (three species) and season (one species) on average length were comparatively small. By adding night bottom trawl samples to night AC-MT collections, the entire fish community of Lake Superior can be monitored with a single lakewide survey employing multiple gears. The establishment of offshore sampling (i.e., where depths exceed 80 m) will provide estimates of deepwater species that have been largely undersampled by the 1978-designed survey. We recommend that the present fish community survey be maintained, albeit at a reduced level, until a nighttime survey time series is well established (in 3-5 years).

  8. How Many Fish Need to Be Measured to Effectively Evaluate Trawl Selectivity?

    PubMed Central

    Santos, Juan; Sala, Antonello

    2016-01-01

    The aim of this study was to provide practitioners working with trawl selectivity with general and easily understandable guidelines regarding the fish sampling effort necessary during sea trials. In particular, we focused on how many fish would need to be caught and length measured in a trawl haul in order to assess the selectivity parameters of the trawl at a designated uncertainty level. We also investigated the dependency of this uncertainty level on the experimental method used to collect data and on the potential effects of factors such as the size structure in the catch relative to the size selection of the gear. We based this study on simulated data created from two different fisheries: the Barents Sea cod (Gadus morhua) trawl fishery and the Mediterranean Sea multispecies trawl fishery represented by red mullet (Mullus barbatus). We used these two completely different fisheries to obtain results that can be used as general guidelines for other fisheries. We found that the uncertainty in the selection parameters decreased with increasing number of fish measured and that this relationship could be described by a power model. The sampling effort needed to achieve a specific uncertainty level for the selection parameters was always lower for the covered codend method compared to the paired-gear method. In many cases, the number of fish that would need to be measured to maintain a specific uncertainty level was around 10 times higher for the paired-gear method than for the covered codend method. The trends observed for the effect of sampling effort in the two fishery cases investigated were similar; therefore the guidelines presented herein should be applicable to other fisheries. PMID:27560696

  9. 30 CFR 250.1741 - If I drag a trawl across a site, what requirements must I meet?

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ..., 600-foot-radius circle centered on the well location. (3) Platform site, 1,320-foot-radius circle..., parallel to the pipeline, (h) You must ensure that any trawling contractor you may use: (1) Has...

  10. 30 CFR 250.1741 - If I drag a trawl across a site, what requirements must I meet?

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ..., 600-foot-radius circle centered on the well location. (3) Platform site, 1,320-foot-radius circle..., parallel to the pipeline, (h) You must ensure that any trawling contractor you may use: (1) Has...

  11. Trawling-induced resuspension and dispersal of muddy sediments and dissolved elements in the Gulf of Lion (NW Mediterranean)

    NASA Astrophysics Data System (ADS)

    Durrieu de Madron, X.; Ferré, B.; Le Corre, G.; Grenz, C.; Conan, P.; Pujo-Pay, M.; Buscail, R.; Bodiot, O.

    2005-12-01

    A dedicated trawling experiment was performed at three sites on the Gulf of Lion continental shelf, with the aim of assessing the resuspension of particulate and dissolved matter triggered by different types of trawls on muddy sediments. The different configurations were: (i) bottom trawl, with bobbin for ground rope (Rockhopper): (ii) bottom trawl, without bobbin (Medits); and (iii) pelagic trawl, towed at 1 and 10 m above the seabed. The plumes of resuspended sediment were measured using the acoustic backscattered intensity, from a towed ADCP. Concomitant profiles of particle size-distribution, light transmission and water samples were collected, outside and inside the plumes. The analysis of the data enabled derivation of the major physical and chemical characteristics of the plumes generated by the trawls; likewise, and to quantify the resuspension fluxes of sediment, particulate (PN, POC) and dissolved (nutrients) elements. The residence time and dispersal of the plumes were monitored and modelled, considering the settling velocity of the particulate matter and the near-bottom turbulence. The results indicate that the bottom trawls produce significant resuspension, whilst the near-bottom and mid-water pelagic trawls have no impact upon the sediment. The sediment clouds at several hundreds metres astern of the bottom trawls are 3-6 m high and 70-200 m wide; they were generated both by the otter doors and the net. The average suspended sediment concentrations measured in the plumes reach 50 mg l -1. Resuspension fluxes of sediment along the path of the trawls range from 190 g m -2 s -1, for the coarsest sediment (clayey silt) to 800 g m -2 s -1 for the finest sediment (silty clay). Whilst the resuspended loads of dissolved elements (nutrients) within the plume segment suggest a release of porewater, present at least in the first few centimetres of sediment, the particulate matter load only resulted from the resuspension of less than 1 mm thickness of the

  12. Influence of bottom trawling on sediment resuspension in the `Grande-Vasière' area (Bay of Biscay, France)

    NASA Astrophysics Data System (ADS)

    Margvelashvili, Nugzar Yu; Herzfeld, Mike; Rizwi, Farhan; Mongin, Mathieu; Baird, Mark E.; Jones, Emlyn; Schaffelke, Britta; King, Edward; Schroeder, Thomas

    2016-08-01

    Sea trials were performed on two zones with different fishing efforts on the continental shelf of the Bay of Biscay (`Grande-Vasière' area of muddy sand) in order to assess particulate matter resuspension and seabed disturbances (i.e., penetration, reworking, grain size changes) induced by different types of trawls. Optical and acoustic measurements made in the water column indicate a significant trawling-induced resuspension mainly due to the scraping action of doors. It manifests as a highly dynamic turbid plume confined near the seabed, where suspended sediment concentrations can reach 200 mg l-1. Concentration levels measured behind an "alternative" configuration (trawls with jumper doors instead of classical doors penetrating the sediment) are significantly lower (around 10-20 mg l-1), which indicates a potential limiting impact regarding the seabed. Grain size analyses of the surficial sediment led to highlight a potential reworking influence of bottom trawling. On the intensively trawled zone, this reworking manifests as an upward coarsening trend in the first 5 cm of the cores. A significant decrease in mud content (30 %) has been also witnessed on this zone between 1967 and 2014, which suggests an influence on the seabed evolution. The geometric analysis of bottom tracks (4-5-cm depth, 20-cm width) observed with a benthic video sledge was used to compute an experimental trawling-induced erosion rate of 0.13 kg m-2. This erosion rate was combined with fishing effort data, in order to estimate trawling-induced erosion fluxes which were then compared to natural erosion fluxes over the Grande-Vasière at monthly, seasonal and annual scales. Winter storms control the annual resuspended load and trawling contribution to annual resuspension is in the order of 1 %. However, results show that trawling resuspension can become dominant during the fishing high season (i.e., until several times the natural one in summer). In addition, the contribution of trawling

  13. Influence of bottom trawling on sediment resuspension in the `Grande-Vasière' area (Bay of Biscay, France)

    NASA Astrophysics Data System (ADS)

    Mengual, Baptiste; Cayocca, Florence; Le Hir, Pierre; Draye, Robin; Laffargue, Pascal; Vincent, Benoit; Garlan, Thierry

    2016-09-01

    Sea trials were performed on two zones with different fishing efforts on the continental shelf of the Bay of Biscay (`Grande-Vasière' area of muddy sand) in order to assess particulate matter resuspension and seabed disturbances (i.e., penetration, reworking, grain size changes) induced by different types of trawls. Optical and acoustic measurements made in the water column indicate a significant trawling-induced resuspension mainly due to the scraping action of doors. It manifests as a highly dynamic turbid plume confined near the seabed, where suspended sediment concentrations can reach 200 mg l-1. Concentration levels measured behind an "alternative" configuration (trawls with jumper doors instead of classical doors penetrating the sediment) are significantly lower (around 10-20 mg l-1), which indicates a potential limiting impact regarding the seabed. Grain size analyses of the surficial sediment led to highlight a potential reworking influence of bottom trawling. On the intensively trawled zone, this reworking manifests as an upward coarsening trend in the first 5 cm of the cores. A significant decrease in mud content (30 %) has been also witnessed on this zone between 1967 and 2014, which suggests an influence on the seabed evolution. The geometric analysis of bottom tracks (4-5-cm depth, 20-cm width) observed with a benthic video sledge was used to compute an experimental trawling-induced erosion rate of 0.13 kg m-2. This erosion rate was combined with fishing effort data, in order to estimate trawling-induced erosion fluxes which were then compared to natural erosion fluxes over the Grande-Vasière at monthly, seasonal and annual scales. Winter storms control the annual resuspended load and trawling contribution to annual resuspension is in the order of 1 %. However, results show that trawling resuspension can become dominant during the fishing high season (i.e., until several times the natural one in summer). In addition, the contribution of trawling

  14. Evaluation of bottom trawls as compared to acoustics to assess adult Lake Herring (Coregonus artedi) abundance in Lake Superior

    USGS Publications Warehouse

    Stockwell, J.D.; Yule, D.L.; Gorman, O.T.; Isaac, E.J.; Moore, S.A.

    2006-01-01

    We compared density estimates from day bottom trawl tows against night midwater trawl tows and acoustic gear to test the hypothesis that adult lake herring (≥250 mm) are underestimated by day bottom trawl tows during the annual USGS spring fish community survey in Lake Superior. We found average density at nine nearshore stations was significantly higher at night (21.3 adult fish/ha) compared to day (1.0 adult fish/ha; p = 0.0119). At nine offshore stations, no lake herring were captured during the day but density averaged 39.6 adult fish/ha at night. At a lakewide scale (n = 18 stations), precision (relative standard error) was much better using night midwater trawls and acoustic gear (37%) compared to day bottom trawls (100%). Moderate sample size increases using the former methodology would likely bring precision within recommended levels (≤30%) for stock-recruit data sets. Our results suggest that 1) population abundances of adult lake herring in Lake Superior are much higher than previously considered, 2) the annual spring fish community survey may not provide a relative index of abundance of adult lake herring, 3) night midwater trawls and acoustic gear are necessary for assessing adult lake herring abundance, and 4) previous studies using lake herring data from the annual spring fish community survey need to be re-evaluated in light of these results. Lake herring appear to become progressively more pelagic and less susceptible to bottom trawling as they mature. Day bottom trawls appear to be an adequate tool for estimating relative density of age-1 recruits, although this method still suffers from relatively poor precision.

  15. Improving the design of acoustic and midwater trawl surveys through stratification, with an application to Lake Michigan prey fishes

    USGS Publications Warehouse

    Adams, J.V.; Argyle, R.L.; Fleischer, G.W.; Curtis, G.L.; Stickel, R.G.

    2006-01-01

    Reliable estimates of fish biomass are vital to the management of aquatic ecosystems and their associated fisheries. Acoustic and midwater trawl surveys are an efficient sampling method for estimating fish biomass in large bodies of water. To improve the precision of biomass estimates from combined acoustic and midwater trawl surveys, sampling effort should be optimally allocated within each stage of the survey design. Based on information collected during fish surveys, we developed an approach to improve the design of combined acoustic and midwater trawl surveys through stratification. Geographic strata for acoustic surveying and depth strata for midwater trawling were defined using neighbor-restricted cluster analysis, and the optimal allocation of sampling effort for each was then determined. As an example, we applied this survey stratification approach to data from lakewide acoustic and midwater trawl surveys of Lake Michigan prey fishes. Precision of biomass estimates from surveys with and without geographic stratification was compared through resampling. Use of geographic stratification with optimal sampling allocation reduced the variance of Lake Michigan acoustic biomass estimates by 77%. Stratification and optimal allocation at each stage of an acoustic and midwater trawl survey should serve to reduce the variance of the resulting biomass estimates.

  16. COSTAR FOC M1/M2 Mirror Arm Deployment

    NASA Astrophysics Data System (ADS)

    Bacinski, John

    1997-07-01

    The COSTAR's FOC M1/M2 arms will be returned to their pre-servicing mission positions. WFPC-2's shutter is required to remain closed during and for 30 minutes after the deployment of the FOC COSTAR arms. The FOC arm deployment activities will be executed with a combinations of R/T and SPC commanding. FOC M1/M2 arm deployments will not be executed until FOC baseline observations have been performed. The activities in this proposal involve many COSTAR CARD items. This proposal requires careful attention during proposal implementation and execution to ensure the CARD is correctly implemented.

  17. Vertical distribution of fish biomass in Lake Superior: Implications for day bottom trawl surveys

    USGS Publications Warehouse

    Stockwell, J.D.; Yule, D.L.; Hrabik, T.R.; Adams, J.V.; Gorman, O.T.; Holbrook, B.V.

    2007-01-01

    Evaluation of the biases in sampling methodology is essential for understanding the limitations of abundance and biomass estimates of fish populations. Estimates from surveys that rely solely on bottom trawls may be particularly vulnerable to bias if pelagic fish are numerous. We evaluated the variability in the vertical distribution of fish biomass during the U.S. Geological Survey's annual spring bottom trawl survey of Lake Superior using concurrent hydroacoustic observations to (1) test the assumption that fish are generally demersal during the day and (2) evaluate the potential for predictive models to improve bottom trawl–determined biomass estimates. Our results indicate that the assumption that fish exhibit demersal behavior during the annual spring bottom trawl survey in Lake Superior is unfounded. Bottom trawl biomass (BBT) estimates (mean ± SE) for species known to exhibit pelagic behavior (cisco Coregonus artedi, bloater C. hoyi, kiyi C. kiyi, and rainbow smelt Osmerus mordax; 3.01 ± 0.73 kg/ha) were not significantly greater than mean acoustic pelagic zone biomass (BAPZ) estimates (6.39 ± 2.03 kg/ha). Mean BAPZ estimates were 1.6- to 4.8-fold greater than mean BBT estimates over 4 years of sampling. The relationship between concurrent BAPZ and BBT estimates was marginally significant and highly variable. Predicted BAPZ estimates using cross-validation models were sensitive to adjustments for back-transforming from the logarithmic to the linear scale and poorly corresponded to observed BAPZ estimates. We conclude that statistical models to predict BAPZ from day BBT cannot be developed. We propose that night sampling with multiple gears will be necessary to generate better biomass estimates for management needs.

  18. Deep-sea ecosystem response to bottom trawling impacts: changes in sediment bioturbation patterns

    NASA Astrophysics Data System (ADS)

    Puig, P.; Martin, J.; Masque, P.; Mecho, A.; Company, J. B.; Palanques, A.

    2015-12-01

    Studies conducted in La Fonera (Palamós) submarine canyon (NW Mediterranean) evidence that trawling activities along the canyon flanks cause resuspension and transport of sediments towards the canyon axis. The analysis of a sediment core collected at 1750 m in 2002 showed a doubling of the sediment accumulation rate since the 1970s, coincident with the rapid industrialization of the local trawling fleet. This occurred along with a change from bioturbated texture to well-preserved sedimentary layering, interpreted as depositional pulses of trawling-induced sediment gravity flows. The good preservation of these structures was explained as a temporary hampering of biological mixing, resulting from suffocation of bioturbating fauna. The same canyon area was revisited a decade later (2011) and new data are consistent with the sedimentary regime shift during the 1970s, but also suggest that the accumulation rate during the last decade is even greater than expected, approaching ~2.4 cm/y (compared to ~0.25 cm/y pre-1970s). The X-radiograph image from the 2011 sediment core also indicates that bioturbation, if hampered in the 2002 core, has been reactivated later. Various ichnofabrics observable in the 2011 core testify to a diverse bioturbating fauna, including a scolitia resulting from the burrowing activity of an endobenthic echinoid. Remotely operated vehicle images collected along the canyon axis seafloor evidenced a large presence and densities of the burrowing sea urchin Brissopsis lyrifera. This species has also been found in high densities in the neighbor Blanes canyon axis, while it was absent from the adjacent open slope. However, historical data indicate that B. lyrifera was present in high numbers in the slope region in previous decades, suggesting that trawling activities have modified the distribution of this burrowing species and that the canyon environment is currently functioning as refuge area that offers a suitable environment for their proliferation.

  19. Impact of natural (storm) and anthropogenic (trawling) sediment resuspension on particulate organic matter in coastal environments

    NASA Astrophysics Data System (ADS)

    Pusceddu, A.; Grémare, A.; Escoubeyrou, K.; Amouroux, J. M.; Fiordelmondo, C.; Danovaro, R.

    2005-12-01

    In order to assess the impact of natural and anthropogenic sediment resuspension on quantity, biochemical composition and bioavailability of particulate organic matter (POM), two field investigations were carried out in two shallow coastal areas of the Mediterranean Sea. In the Gulf of Lions, we investigated the impact of a storm resuspension of sediment, whereas in the Thermaikos Gulf we investigated the impact of bottom trawling. Resuspension in the Gulf of Lions determined the increase of sedimentation rates, modified the composition of the organic fraction of settling particles and decreased the labile fraction of POM, as indicated by a drop in the enzymatically hydrolysable amino acid fraction. The increase in the refractory fraction, following short-term storm-induced resuspension, increased also the contribution of glycine and decreased the contribution of aspartic acid contents to the total amino acid pools. Trawling activities in Thermaikos Gulf determined a significant increase in suspended POM concentrations and important changes in its biochemical composition. After trawling, the protein to carbohydrate ratio decreased (as a result of a major input of sedimentary carbohydrates at the water-sediment interface) and the fraction of enzymatically hydrolysable biopolymeric C decreased by ≈30%, thus reducing the bioavailability of resuspended organic particles. Results of the present study indicate that changes in suspended POM, induced by storms and trawling activities, can have similar consequences on benthic systems and on food webs. In fact, the potential benefit of increased organic particle concentration for suspension feeders, is depressed by the shift of suspended food particles towards a more refractory composition.

  20. Identification and evaluation of shark bycatch in Georgia's commercial shrimp trawl fishery with implications for management

    USGS Publications Warehouse

    Belcher, C.N.; Jennings, C.A.

    2011-01-01

    Many US states have recreational and commercial fisheries that occur in nursery areas occupied by subadult sharks and can potentially affect their survival. Georgia is one of few US states without a directed commercial shark fishery, but the state has a large, nearshore penaeid shrimp trawl fishery in which small sharks occur as bycatch. During our 1995–1998 investigation of bycatch in fishery-dependent sampling events, 34% of 127 trawls contained sharks. This bycatch totalled 217 individuals from six species, with Atlantic sharpnose shark, Rhizoprionodon terraenovae (Richardson), the most common and finetooth shark, Carcharhinus isodon (Müller & Henle) and spinner shark, Carcharhinus brevipinna (Müller & Henle), the least common. The highest catch rates for sharks occurred during June and July and coincided with the peak months of the pupping season for many species. Trawl tow speed and tow time did not significantly influence catch rates for shark species. Gear configurations [net type, turtle excluder device (TED), bycatch reduction device] affected catch rates for shark species. Results of this study indicate gear restrictions, a delayed season opening, or reduced bar spacing on TEDs may reduce shark bycatch in this fishery.

  1. Effect of Codend Circumference on the Size Selection of Square-Mesh Codends in Trawl Fisheries

    PubMed Central

    De Carlo, Francesco; Lucchetti, Alessandro

    2016-01-01

    It is well established that increasing mesh number in the circumference of a diamond-mesh trawl codend can reduce size selection for round fish, whereas selection for flat fish species is unaffected. This effect has also been documented in Mediterranean trawl fisheries. In contrast, no information is available with regard to the effect of increasing mesh number in the circumference of square-mesh codends on the size selection of round fish and flat fish species. A field study was devised to bridge this gap and formulate proposals aimed at improving trawl fishery management. Size selection data were collected for a round fish species, red mullet (Mullus barbatus), and two flat fish species, Mediterranean scaldfish (Arnoglossus laterna) and solenette (Buglossidium luteum). Fishing trials were conducted in the Adriatic Sea (Central Mediterranean) using three square-mesh codends that differed only in mesh number around the circumference. Results demonstrated that increasing the number of meshes from 107 to 213 reduced the 50% retention length (L50) for red mullet by 2.5 cm but did not affect size selection for the two flat fish species. In some fisheries, regulatory provisions regarding the number of meshes in the circumference should therefore be carefully considered both for diamond- and square-mesh codends. PMID:27472058

  2. Effect of Codend Circumference on the Size Selection of Square-Mesh Codends in Trawl Fisheries.

    PubMed

    Sala, Antonello; Herrmann, Bent; De Carlo, Francesco; Lucchetti, Alessandro; Brčić, Jure

    2016-01-01

    It is well established that increasing mesh number in the circumference of a diamond-mesh trawl codend can reduce size selection for round fish, whereas selection for flat fish species is unaffected. This effect has also been documented in Mediterranean trawl fisheries. In contrast, no information is available with regard to the effect of increasing mesh number in the circumference of square-mesh codends on the size selection of round fish and flat fish species. A field study was devised to bridge this gap and formulate proposals aimed at improving trawl fishery management. Size selection data were collected for a round fish species, red mullet (Mullus barbatus), and two flat fish species, Mediterranean scaldfish (Arnoglossus laterna) and solenette (Buglossidium luteum). Fishing trials were conducted in the Adriatic Sea (Central Mediterranean) using three square-mesh codends that differed only in mesh number around the circumference. Results demonstrated that increasing the number of meshes from 107 to 213 reduced the 50% retention length (L50) for red mullet by 2.5 cm but did not affect size selection for the two flat fish species. In some fisheries, regulatory provisions regarding the number of meshes in the circumference should therefore be carefully considered both for diamond- and square-mesh codends. PMID:27472058

  3. Quantifying the Escape Mortality of Trawl Caught Antarctic Krill (Euphausia superba).

    PubMed

    Krafft, Bjørn A; Krag, Ludvig A; Engås, Arill; Nordrum, Sigve; Bruheim, Inge; Herrmann, Bent

    2016-01-01

    Antarctic krill (Euphausia superba) is an abundant fishery resource, the harvest levels of which are expected to increase. However, many of the length classes of krill can escape through commonly used commercial trawl mesh sizes. A vital component of the overall management of a fishery is to estimate the total fishing mortality and quantify the mortality rate of individuals that escape from fishing gear. The methods for determining fishing mortality in krill are still poorly developed. We used a covered codend sampling technique followed by onboard observations made in holding tanks to monitor mortality rates of escaped krill. Haul duration, hydrological conditions, maximum fishing depth and catch composition all had no significant effect on mortality of krill escaping 16 mm mesh size nets, nor was any further mortality associated with the holding tank conditions. A non- parametric Kaplan-Meier analysis was used to model the relationship between mortality rates of escapees and time. There was a weak tendency, though not significant, for smaller individuals to suffer higher mortality than larger individuals. The mortality of krill escaping the trawl nets in our study was 4.4 ± 4.4%, suggesting that krill are fairly tolerant of the capture-and-escape process in trawls. PMID:27622510

  4. Behavioral flexibility of the trawling long-legged bat, Macrophyllum macrophyllum (Phyllostomidae)

    PubMed Central

    Weinbeer, Moritz; Kalko, Elisabeth K. V.; Jung, Kirsten

    2013-01-01

    We assessed the behavioral flexibility of the trawling long-legged bat, Macrophyllum macrophyllum (Phyllostomidae) in flight cage experiments by exposing it to prey suspended from nylon threads in the air and to food placed onto the water surface at varying distances to clutter-producing background (water plants). The bat revealed flexibility in foraging mode and caught prey in the air (aerial hawking) and from the water surface (trawling). M. macrophyllum was constrained in finding food very near to and within clutter. As echolocation was the prime sensory mode used by M. macrophyllum for detection and localization of food, the bat might have been unable to perceive sufficient information from prey near clutter as background echoes from the water plant increasingly overlapped with echoes from food. The importance of echolocation for foraging is reflected in a stereotypic call pattern of M. macrophyllum that resembles other aerial insectivorous and trawling bats with a pronounced terminal phase (buzz) prior to capture attempts. Our findings contrast studies of other phyllostomid bats that glean prey very near or from vegetation, often using additional sensory cues, such as prey-produced noise, to find food and that lack a terminal phase in echolocation behavior. In M. macrophyllum, acoustic characteristics of its foraging habitat have shaped its sonar system more than phylogeny. PMID:24324442

  5. Quantifying the Escape Mortality of Trawl Caught Antarctic Krill (Euphausia superba)

    PubMed Central

    Krafft, Bjørn A.; Krag, Ludvig A.; Engås, Arill; Nordrum, Sigve; Bruheim, Inge; Herrmann, Bent

    2016-01-01

    Antarctic krill (Euphausia superba) is an abundant fishery resource, the harvest levels of which are expected to increase. However, many of the length classes of krill can escape through commonly used commercial trawl mesh sizes. A vital component of the overall management of a fishery is to estimate the total fishing mortality and quantify the mortality rate of individuals that escape from fishing gear. The methods for determining fishing mortality in krill are still poorly developed. We used a covered codend sampling technique followed by onboard observations made in holding tanks to monitor mortality rates of escaped krill. Haul duration, hydrological conditions, maximum fishing depth and catch composition all had no significant effect on mortality of krill escaping 16 mm mesh size nets, nor was any further mortality associated with the holding tank conditions. A non- parametric Kaplan-Meier analysis was used to model the relationship between mortality rates of escapees and time. There was a weak tendency, though not significant, for smaller individuals to suffer higher mortality than larger individuals. The mortality of krill escaping the trawl nets in our study was 4.4 ± 4.4%, suggesting that krill are fairly tolerant of the capture-and-escape process in trawls. PMID:27622510

  6. Behavioral flexibility of the trawling long-legged bat, Macrophyllum macrophyllum (Phyllostomidae).

    PubMed

    Weinbeer, Moritz; Kalko, Elisabeth K V; Jung, Kirsten

    2013-01-01

    We assessed the behavioral flexibility of the trawling long-legged bat, Macrophyllum macrophyllum (Phyllostomidae) in flight cage experiments by exposing it to prey suspended from nylon threads in the air and to food placed onto the water surface at varying distances to clutter-producing background (water plants). The bat revealed flexibility in foraging mode and caught prey in the air (aerial hawking) and from the water surface (trawling). M. macrophyllum was constrained in finding food very near to and within clutter. As echolocation was the prime sensory mode used by M. macrophyllum for detection and localization of food, the bat might have been unable to perceive sufficient information from prey near clutter as background echoes from the water plant increasingly overlapped with echoes from food. The importance of echolocation for foraging is reflected in a stereotypic call pattern of M. macrophyllum that resembles other aerial insectivorous and trawling bats with a pronounced terminal phase (buzz) prior to capture attempts. Our findings contrast studies of other phyllostomid bats that glean prey very near or from vegetation, often using additional sensory cues, such as prey-produced noise, to find food and that lack a terminal phase in echolocation behavior. In M. macrophyllum, acoustic characteristics of its foraging habitat have shaped its sonar system more than phylogeny.

  7. Effect of Codend Circumference on the Size Selection of Square-Mesh Codends in Trawl Fisheries.

    PubMed

    Sala, Antonello; Herrmann, Bent; De Carlo, Francesco; Lucchetti, Alessandro; Brčić, Jure

    2016-01-01

    It is well established that increasing mesh number in the circumference of a diamond-mesh trawl codend can reduce size selection for round fish, whereas selection for flat fish species is unaffected. This effect has also been documented in Mediterranean trawl fisheries. In contrast, no information is available with regard to the effect of increasing mesh number in the circumference of square-mesh codends on the size selection of round fish and flat fish species. A field study was devised to bridge this gap and formulate proposals aimed at improving trawl fishery management. Size selection data were collected for a round fish species, red mullet (Mullus barbatus), and two flat fish species, Mediterranean scaldfish (Arnoglossus laterna) and solenette (Buglossidium luteum). Fishing trials were conducted in the Adriatic Sea (Central Mediterranean) using three square-mesh codends that differed only in mesh number around the circumference. Results demonstrated that increasing the number of meshes from 107 to 213 reduced the 50% retention length (L50) for red mullet by 2.5 cm but did not affect size selection for the two flat fish species. In some fisheries, regulatory provisions regarding the number of meshes in the circumference should therefore be carefully considered both for diamond- and square-mesh codends.

  8. Quantifying the Escape Mortality of Trawl Caught Antarctic Krill (Euphausia superba).

    PubMed

    Krafft, Bjørn A; Krag, Ludvig A; Engås, Arill; Nordrum, Sigve; Bruheim, Inge; Herrmann, Bent

    2016-01-01

    Antarctic krill (Euphausia superba) is an abundant fishery resource, the harvest levels of which are expected to increase. However, many of the length classes of krill can escape through commonly used commercial trawl mesh sizes. A vital component of the overall management of a fishery is to estimate the total fishing mortality and quantify the mortality rate of individuals that escape from fishing gear. The methods for determining fishing mortality in krill are still poorly developed. We used a covered codend sampling technique followed by onboard observations made in holding tanks to monitor mortality rates of escaped krill. Haul duration, hydrological conditions, maximum fishing depth and catch composition all had no significant effect on mortality of krill escaping 16 mm mesh size nets, nor was any further mortality associated with the holding tank conditions. A non- parametric Kaplan-Meier analysis was used to model the relationship between mortality rates of escapees and time. There was a weak tendency, though not significant, for smaller individuals to suffer higher mortality than larger individuals. The mortality of krill escaping the trawl nets in our study was 4.4 ± 4.4%, suggesting that krill are fairly tolerant of the capture-and-escape process in trawls.

  9. 1-mJ, sub-5-fs carrier-envelope phase-locked pulses

    NASA Astrophysics Data System (ADS)

    Chen, X.; Canova, L.; Malvache, A.; Jullien, A.; Lopez-Martens, R.; Durfee, C.; Papadopoulos, D.; Druon, F.

    2010-04-01

    We report the routine generation of sub-5-fs laser pulses with 1-mJ energy and stable carrier-envelope phase at 1-kHz repetition rate, obtained by compressing the multi-mJ output from a phase-locked Ti:sapphire amplifier in a rare-gas-filled hollow fiber. The dual-stage amplifier features a hybrid transmission grating/chirped mirror compressor providing 2.2-mJ, 26-fs pulses at 1 kHz with standard phase deviation of 190 mrad rms. We demonstrate hour-long phase stability without feedback control of grating position or rigorous control of the laser environment, simply by using small pulse stretching factors in the amplifier, which minimize the beam pathway in the compressor. The amplifier also integrates a versatile AOPDF (acousto-optic programmable dispersive filter) for closed-loop spectral phase optimization. The various factors influencing the overall phase stability of the system are discussed in detail. Using the optimized output, 1-mJ, 4.5-fs pulses are generated by seeding the neon gas filled hollow fiber with a circularly polarized input beam. A standard phase deviation of 230 mrad after the HCF is obtained by direct f-to-2 f detection and slow-loop feedback to the oscillator locking electronics without any additional spectral broadening.

  10. Progress in the ULTRA 1-m ground-based telescope

    NASA Astrophysics Data System (ADS)

    Romeo, Robert C.; Martin, Robert N.; Twarog, Bruce; Anthony-Twarog, Barbara; Taghavi, Ray; Hale, Rick; Etzel, Paul; Fesen, Rob; Shawl, Steve

    2006-06-01

    We present the technical status of the Ultra Lightweight Telescope for Research in Astronomy (ULTRA) program. The program is a 3-year Major Research Instrumentation (MRI) program funded by NSF. The MRI is a collaborative effort involving Composite Mirror Applications, Inc. (CMA), University of Kansas, San Diego State University and Dartmouth College. Objectives are to demonstrate the feasibility of carbon fiber reinforced plastic (CFRP) composite mirror technology for ground-based optical telescopes. CMA is spearheading the development of surface replication techniques to produce the optics, fabricating the 1m glass mandrel, and constructing the optical tube assembly (OTA). Presented will be an overview and status of the 1-m mandrel fabrication, optics development, telescope design and CFRP telescope fabrication by CMA for the ULTRA Telescope.

  11. Bipod flexure for 1-m primary mirror system.

    PubMed

    Kihm, Hagyong; Yang, Ho-Soon; Lee, Yun-Woo

    2014-12-01

    We present an analytical formulation of the bipod flexure for mounting the 1-m primary mirror in a space telescope. Compliance and stiffness matrices of the bipod flexure are derived to estimate theoretical performance and to make initial design guidelines. We use finite element analysis to optimize the bipod design satisfying the application requirements. Experimental verification is achieved by vibration test with a dummy mirror system. PMID:25554320

  12. The ‘W’ Prawn-Trawl with Emphasised Drag-Force Transfer to Its Centre Line to Reduce Overall System Drag

    PubMed Central

    Balash, Cheslav; Sterling, David; Binns, Jonathan; Thomas, Giles; Bose, Neil

    2015-01-01

    For prawn trawling systems, drag reduction is a high priority as the trawling process is energy intensive. Large benefits have occurred through the use of multiple-net rigs and thin twine in the netting. An additional positive effect of these successful twine-area reduction strategies is the reduced amount of otter board area required to spread the trawl systems, which leads to further drag reduction. The present work investigated the potential of redirecting the drag-strain within a prawn trawl away from the wings and the otter boards to the centre line of the trawl, where top and bottom tongues have been installed, with an aim to minimise the loading/size of the otter boards required to spread the trawl. In the system containing the new ‘W’ trawl, the drag redirected to the centre-line tongues is transferred forward through a connected sled and towing wires to the trawler. To establish the extent of drag redirection to the centre-line tongues and the relative drag benefits of the new trawl system, conventional and ‘W’ trawls of 3.65 m headline length were tested firstly over a range of spread ratios in the flume tank, and subsequently at optimum spread ratio in the field. The developed ‘W’ trawl effectively directed 64% of netting-drag off the wings and onto the centre tongues, which resulted in drag savings in the field of ∼20% for the associated ‘W’ trawl/otter-board/sled system compared to the traditional trawl/otter-board arrangement in a single trawl or twin rig configuration. Furthermore, based on previously published data, the new trawl when used in a twin rig system is expected to provide approximately 12% drag reduction compared to quad rig. The twin ‘W’ trawl system also has benefits over quad rig in that a reduced number of cod-end/By-catch Reduction Device units need to be installed and attended each tow. PMID:25751251

  13. When does fishing lead to more fish? Community consequences of bottom trawl fisheries in demersal food webs.

    PubMed

    van Denderen, P Daniel; van Kooten, Tobias; Rijnsdorp, Adriaan D

    2013-10-22

    Bottom trawls are a globally used fishing gear that physically disturb the seabed and kill non-target organisms, including those that are food for the targeted fish species. There are indications that ensuing changes to the benthic invertebrate community may increase the availability of food and promote growth and even fisheries yield of target fish species. If and how this occurs is the subject of ongoing debate, with evidence both in favour and against. We model the effects of trawling on a simple ecosystem of benthivorous fish and two food populations (benthos), susceptible and resistant to trawling. We show that the ecosystem response to trawling depends on whether the abundance of benthos is top-down or bottom-up controlled. Fishing may result in higher fish abundance, higher (maximum sustainable) yield and increased persistence of fish when the benthos which is the best-quality fish food is also more resistant to trawling. These positive effects occur in bottom-up controlled systems and systems with limited impact of fish feeding on benthos, resembling bottom-up control. Fishing leads to lower yields and fish persistence in all configurations where susceptible benthos are more profitable prey. Our results highlight the importance of mechanistic ecosystem knowledge as a requirement for successful management.

  14. When does fishing lead to more fish? Community consequences of bottom trawl fisheries in demersal food webs

    PubMed Central

    van Denderen, P. Daniel; van Kooten, Tobias; Rijnsdorp, Adriaan D.

    2013-01-01

    Bottom trawls are a globally used fishing gear that physically disturb the seabed and kill non-target organisms, including those that are food for the targeted fish species. There are indications that ensuing changes to the benthic invertebrate community may increase the availability of food and promote growth and even fisheries yield of target fish species. If and how this occurs is the subject of ongoing debate, with evidence both in favour and against. We model the effects of trawling on a simple ecosystem of benthivorous fish and two food populations (benthos), susceptible and resistant to trawling. We show that the ecosystem response to trawling depends on whether the abundance of benthos is top-down or bottom-up controlled. Fishing may result in higher fish abundance, higher (maximum sustainable) yield and increased persistence of fish when the benthos which is the best-quality fish food is also more resistant to trawling. These positive effects occur in bottom-up controlled systems and systems with limited impact of fish feeding on benthos, resembling bottom-up control. Fishing leads to lower yields and fish persistence in all configurations where susceptible benthos are more profitable prey. Our results highlight the importance of mechanistic ecosystem knowledge as a requirement for successful management. PMID:24004941

  15. Note: A 1-m Foucault pendulum rolling on a ball.

    PubMed

    Salva, H R; Benavides, R E; Venturino, J A; Cuscueta, D J; Ghilarducci, A A

    2013-10-01

    We have built a short Foucault pendulum of 1-m length. The aim of this work was to increase the sensitivity to elliptical trajectories from other longer pendula. The design was a semi-rigid pendulum that rolls over a small ball. The measurements of the movements (azimuth and elliptical trajectory) were done by an optical method. The resulting pendulum works in a medium satisfactory way due to problems of the correct choice of the mass of the bob together with the diameter of the supporting ball. It is also important to keep the rolling surface very clean.

  16. Note: A 1-m Foucault pendulum rolling on a ball

    NASA Astrophysics Data System (ADS)

    Salva, H. R.; Benavides, R. E.; Venturino, J. A.; Cuscueta, D. J.; Ghilarducci, A. A.

    2013-10-01

    We have built a short Foucault pendulum of 1-m length. The aim of this work was to increase the sensitivity to elliptical trajectories from other longer pendula. The design was a semi-rigid pendulum that rolls over a small ball. The measurements of the movements (azimuth and elliptical trajectory) were done by an optical method. The resulting pendulum works in a medium satisfactory way due to problems of the correct choice of the mass of the bob together with the diameter of the supporting ball. It is also important to keep the rolling surface very clean.

  17. 50 CFR Figure 5 to Part 679 - Kodiak Island Type 1, 2, and 3 Nonpelagic Trawl Closure Status and Marmot Bay Tanner Crab...

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Kodiak Island Type 1, 2, and 3 Nonpelagic Trawl Closure Status and Marmot Bay Tanner Crab Protection Area 5 Figure 5 to Part 679 Wildlife and... to Part 679—Kodiak Island Type 1, 2, and 3 Nonpelagic Trawl Closure Status and Marmot Bay Tanner...

  18. Retrospective analysis of Bering Sea bottom trawl surveys: regime shift and ecosystem reorganization

    NASA Astrophysics Data System (ADS)

    Conners, M. E.; Hollowed, A. B.; Brown, E.

    2002-10-01

    This paper compiles data from bottom trawl surveys using variations on a 400-mesh eastern trawl gear into a 38-year time series (1963-2000), using a robust index of median catch per unit effort (CPUE) as an indicator of regional abundance. Time series are presented for three index sites in the southeastern Bering Sea: the inner shelf in Bristol Bay, the middle shelf north of Unimak Island, and the outer shelf near the Pribilof Islands. All three sites show strong evidence of a shift in benthic biomass and community structure in the early to mid-1980s. During this period, all three sites showed substantial increases in the abundances of walleye pollock, Pacific cod, rock sole, flathead sole, cartilaginous fishes (skates) and non-crab benthic invertebrates. Species composition, especially of flatfish, differs at the three sites, but the trend for groundfish abundance to increase was consistent at all three sites. The similarity in trends both across the region and across both commercial and unexploited groups suggests to us that a complete reorganization of benthic and demersal food webs may have taken place. The timing of change in trawl catch weight is consistent with effects of the strong regime shift observed in climate indices in 1976-1977. There is little evidence of similar biological responses to subsequent, less pronounced changes in climate. Our data are also consistent with recently documented shifts in ecosystem dynamics resulting from changes in ice cover and thermal structure in the eastern Bering Sea. Our analysis indicates that there was a much higher biomass of groundfish at all three sites during 1980-2000 than in 1960-1980. This result provides evidence against the hypothesis that the overall productivity of the eastern Bering Sea has decreased. The precipitous decline of the endangered Steller sea lion in this region from 1975-1985 was concurrent with an overall increase in abundance of groundfish prey.

  19. Influence of dreissenid mussels on catchability of benthic fishes in bottom trawls

    USGS Publications Warehouse

    Kocovsky, Patrick M.; Stapanian, Martin A.

    2011-01-01

    Inferring trends in true abundance of fish populations from catch per unit effort data requires either the knowledge of capture probability or the assumption that it is constant, both of which are unlikely contingencies. We developed and validated an index of catchability (a proxy measure for capture probability) from a long-term data set describing nearshore waters of western Lake Erie, and we used the index to test the hypothesis that catchability of four abundant benthic species captured in bottom trawls changed after the invasion of dreissenid mussels. We estimated daytime and nighttime catchability for 1972–1990 (predreissenid period) and 1991–2009 (dreissenid period); we then tested for differences between nighttime and daytime catchability in the predreissenid and dreissenid periods and the nighttime–daytime differential in catchability during the dreissenid period. We also tested relationships between Secchi depth and the catchability index via linear regression. Catchability indices for white perch Morone americana, yellow perch Perca flavescens, and trout-perch Percopsis omiscomaycus did not differ between daytime and nighttime during the predreissenid period. After establishment of dreissenids, all three of these species had lower daytime catchability than nighttime catchability and had positive nighttime–daytime differentials, indicating a shift toward higher nighttime catchability relative to daytime catchability. Changes in catchability indices for freshwater drum Aplodinotus grunniens were opposite the changes observed for the other three species, possibly because the freshwater drum is the only species that actively feeds on dreissenids. Catchability indices were negatively related to water clarity (Secchi depth) for three of the species. Our results are consistent with the hypothesis that catchability of the four most common benthic fish species captured in bottom trawls within nearshore waters of western Lake Erie changed after the

  20. Flexible echolocation behavior of trawling bats during approach of continuous or transient prey cues

    PubMed Central

    Übernickel, Kirstin; Tschapka, Marco; Kalko, Elisabeth K. V.

    2013-01-01

    Trawling bats use echolocation not only to detect and classify acoustically continuous cues originated from insects at and above water surfaces, but also to detect small water-dwelling prey items breaking the water surface for a very short time, producing only transient cues to be perceived acoustically. Generally, bats need to adjust their echolocation behavior to the specific task on hand, and because of the diversity of prey cues they use in hunting, trawling bats should be highly flexible in their echolocation behavior. We studied the adaptations in the behavior of Noctilio leporinus when approaching either a continuous cue or a transient cue that disappeared during the approach of the bat. Normally the bats reacted by dipping their feet in the water at the cue location. We found that the bats typically started to adapt their calling behavior at approximately 410 ms before prey contact in continuous cue trials, but were also able to adapt their approach behavior to stimuli onsets as short as 177 ms before contact, within a minimum reaction time of 50.9 ms in response to transient cues. In both tasks the approach phase ended between 32 and 53 ms before prey contact. Call emission always continued after the end of the approach phase until around prey contact. In some failed capture attempts, call emission did not cease at all after prey contact. Probably bats used spatial memory to dip at the original location of the transient cue after its disappearance. The duration of the pointed dips was significantly longer in transient cue trials than in continuous cue trials. Our results suggest that trawling bats possess the ability to modify their generally rather stereotyped echolocation behavior during approaches within very short reaction times depending on the sensory information available. PMID:23675352

  1. The cooling of particle beams

    SciTech Connect

    Sessler, A.M.

    1994-10-01

    A review is given of the various methods which can be employed for cooling particle beams. These methods include radiation damping, stimulated radiation damping, ionization cooling, stochastic cooling, electron cooling, laser cooling, and laser cooling with beam coupling. Laser Cooling has provided beams of the lowest temperatures, namely 1 mK, but only for ions and only for the longitudinal temperature. Recent theoretical work has suggested how laser cooling, with the coupling of beam motion, can be used to reduce the ion beam temperature in all three directions. The majority of this paper is devoted to describing laser cooling and laser cooling with beam coupling.

  2. Polychaeta of the Kara and Pechora seas: Data of the 2012 trawl survey.

    PubMed

    Frolova, E A; Syomin, V L

    2016-07-01

    The species composition of the polychaetes derived from ichthyological and Sigsbee trawls in the Pechora and Kara seas in 2012 was studied and compared with the grab survey data of 1993-1995. The distribution of the large sabellidae, nektobenthic, and bathypelagic species that are poorly caught by a grab has been determined for the first time. Changes that were observed in the biogeographical polychaete structure in the Kara Sea (a higher proportion of the boreal species and a lower proportion of the Arctic species) may reflect a response of zoobenthos to the Arctic warming in the late 20th and early 21st centuries. PMID:27595826

  3. Impact of bottom trawling on deep-sea sediment properties along the flanks of a submarine canyon.

    PubMed

    Martín, Jacobo; Puig, Pere; Masqué, Pere; Palanques, Albert; Sánchez-Gómez, Anabel

    2014-01-01

    The offshore displacement of commercial bottom trawling has raised concerns about the impact of this destructive fishing practice on the deep seafloor, which is in general characterized by lower resilience than shallow water regions. This study focuses on the flanks of La Fonera (or Palamós) submarine canyon in the Northwestern Mediterranean, where an intensive bottom trawl fishery has been active during several decades in the 400-800 m depth range. To explore the degree of alteration of surface sediments (0-50 cm depth) caused by this industrial activity, fishing grounds and control (untrawled) sites were sampled along the canyon flanks with an interface multicorer. Sediment cores were analyzed to obtain vertical profiles of sediment grain-size, dry bulk density, organic carbon content and concentration of the radionuclide 210Pb. At control sites, surface sediments presented sedimentological characteristics typical of slope depositional systems, including a topmost unit of unconsolidated and bioturbated material overlying sediments progressively compacted with depth, with consistently high 210Pb inventories and exponential decaying profiles of 210Pb concentrations. Sediment accumulation rates at these untrawled sites ranged from 0.3 to 1.0 cm y-1. Sediment properties at most trawled sites departed from control sites and the sampled cores were characterized by denser sediments with lower 210Pb surface concentrations and inventories that indicate widespread erosion of recent sediments caused by trawling gears. Other alterations of the physical sediment properties, including thorough mixing or grain-size sorting, as well as organic carbon impoverishment, were also visible at trawled sites. This work contributes to the growing realization of the capacity of bottom trawling to alter the physical properties of surface sediments and affect the seafloor integrity over large spatial scales of the deep-sea.

  4. Impact of Bottom Trawling on Deep-Sea Sediment Properties along the Flanks of a Submarine Canyon

    PubMed Central

    Martín, Jacobo; Puig, Pere; Masqué, Pere; Palanques, Albert; Sánchez-Gómez, Anabel

    2014-01-01

    The offshore displacement of commercial bottom trawling has raised concerns about the impact of this destructive fishing practice on the deep seafloor, which is in general characterized by lower resilience than shallow water regions. This study focuses on the flanks of La Fonera (or Palamós) submarine canyon in the Northwestern Mediterranean, where an intensive bottom trawl fishery has been active during several decades in the 400–800 m depth range. To explore the degree of alteration of surface sediments (0–50 cm depth) caused by this industrial activity, fishing grounds and control (untrawled) sites were sampled along the canyon flanks with an interface multicorer. Sediment cores were analyzed to obtain vertical profiles of sediment grain-size, dry bulk density, organic carbon content and concentration of the radionuclide 210Pb. At control sites, surface sediments presented sedimentological characteristics typical of slope depositional systems, including a topmost unit of unconsolidated and bioturbated material overlying sediments progressively compacted with depth, with consistently high 210Pb inventories and exponential decaying profiles of 210Pb concentrations. Sediment accumulation rates at these untrawled sites ranged from 0.3 to 1.0 cm y−1. Sediment properties at most trawled sites departed from control sites and the sampled cores were characterized by denser sediments with lower 210Pb surface concentrations and inventories that indicate widespread erosion of recent sediments caused by trawling gears. Other alterations of the physical sediment properties, including thorough mixing or grain-size sorting, as well as organic carbon impoverishment, were also visible at trawled sites. This work contributes to the growing realization of the capacity of bottom trawling to alter the physical properties of surface sediments and affect the seafloor integrity over large spatial scales of the deep-sea. PMID:25111298

  5. Changes in benthic macrofaunal assemblages in relation to bottom trawling in Cuddalore and Parangipettai coastal waters, Southeast coast of India

    NASA Astrophysics Data System (ADS)

    Muthuvelu, Samikkannu; Murugesan, Perumal; Muniasamy, Muniyandi; Vijayalakshmi, Shanmugam; Balasubramanian, Thangavel

    2013-06-01

    Variations in benthic biodiversity owing to bottom trawling were studied in the inshore waters of Parangipettai (Lat.11°24'N; Long. 79°464'E) and Cuddalore (Lat. 11°434'N; Long. 79°494'E), India from February 2009 to January 2010. Four stations each in Parangipettai and Cuddalore were prepared and established. A total of 114 species in Parangipettai and 101 in Cuddalore were found. The population density showed a maximum (10,387 no. m-2) in Parangipettai in the sample collected before trawling and a minimum (40no. m-2) in Cuddalore in the samples collected after trawling. Among the faunal groups, polychaetes topped the list followed by other groups of organisms both in the samples before and after trawling. Shannon diversity varied from 2.23 to 4.24, 1.85 to 3.45; Margalef richness from 3.2 to 5.9, 2.57 to 4.25; Pielou's evenness varied from 0.79 to 0.94, 0.81 to 0.88 in the samples collected before and after trawling respectively in Parangipettai. In Cuddalore waters, Shannon diversity ranged from 2.15 to 3.85, 1.92 to 3.15; Margalef richness from 2.95 to 5.2, 2.24 to 3.95 and Pielou's evenness index from 0.84 to 0.91, 0.79 to 0.82 in the samples before and after trawling respectively. Multivariate methods also showed distinct variations in terms of species composition and abundance between regions and samples.

  6. Benthic fish and invertebrate assemblages within the National Marine Fisheries Service US west coast triennial bottom trawl survey

    NASA Astrophysics Data System (ADS)

    Zimmermann, Mark

    2006-06-01

    This project sought to derive the ecological boundaries within a bottom trawl survey by treating benthic fish and invertebrate species as biological indicators in assemblage analyses. A secondary goal was to determine if these ecological boundaries match the strata boundaries of the bottom trawl survey. Most fishery-independent bottom trawl surveys are driven by management needs for relative biomass estimation of commercial stocks within certain strata, and the strata boundaries are often abiotic features such as political borders, capes and submarine canyons, or arbitrary depths. However, these surveys also generate a great deal of under-utilized data—such as the abundance of non-commercial benthic species and the occurrence of size-groups of commercial species—that can be used for defining ecological boundaries that are independent of the strata boundaries. For an example data set, this analysis used the National Marine Fisheries Service US west coast bottom trawl survey, which has sampled the same 610 stations in three surveys (1995, 1998, and 2001). This analysis determined the geographic extent of three biologically distinct assemblages which occurred in a total of 9 analyses across three bottom trawl surveys and across three assemblage analysis methods: hierarchical clustering, detrended correspondence analysis (DCA), and non-metric multidimensional scaling (NMS). Most trawl survey stations were consistently grouped into the same assemblage in a majority of the 9 analyses, indicating that the assemblages were stable with respect to time and to interpretation from the different assemblage analyses. Kriging on the percent agreement of the 9 analyses at each station defined boundaries of agreement (edges of assemblages), areas of disagreement (transition zones between assemblages), and clear differences from the arbitrary latitude/depth bottom trawl survey stratification scheme. The temporal and statistical consistency, and the geographical continuity of the

  7. Active support system for 1-m SONG primary mirror

    NASA Astrophysics Data System (ADS)

    Niu, Dongsheng; Wang, Guomin; Gu, Bozhong

    2012-05-01

    Chinese-node telescope of Stellar Observations Network Group (SONG) has a primary mirror 1m in diameter with flat back, which will be supported actively. The performance evaluation of the telescope's active optics system is conducted. Finite element analysis (FEA) is employed to analyze the optical surface figures of the primary mirror, and two optimizations are carried out by using ANSYS: (1) the locations and forces of axial supports are optimized with the telescope pointing to zenith; (2) the lateral support forces are calculated with the telescope pointing to horizon. Axial support force sensitivities are calculated in a case that a single axial support has a force error of 0.5N. The correction ability of the active support system is analyzed when an arbitrary axial support is failure. Several low order Zernike modes are modeled with MATLAB procedure, and active optics corrections are applied to these modes. Thermal deformation of the mirror is also corrected using active support system.

  8. Endothelin-1 mRNA expression in the rat kidney.

    PubMed Central

    Nunez, D J; Taylor, E A; Oh, V M; Schofield, J P; Brown, M J

    1991-01-01

    Cultured pig and bovine endothelial cells are capable of synthesizing endothelin-1 (ET-1). Thus the observation that the kidney contains a large number of binding sites for ET distributed in close proximity to endothelial cells suggests that ET-1 may be released from the endothelium to act locally on these receptors. In support of this hypothesis, using the technique of reverse transcription with specific amplification of cDNA, we report here that ET-1 mRNA is expressed in the rat kidney. The partial sequence of the amplified rat ET-1 cDNA confirms that the mature rat peptide is identical to that of the mouse, man and pig, but with some differences in codon usage. PMID:2039460

  9. Reaching 1 m deep on Mars: the Icebreaker drill.

    PubMed

    Zacny, K; Paulsen, G; McKay, C P; Glass, B; Davé, A; Davila, A F; Marinova, M; Mellerowicz, B; Heldmann, J; Stoker, C; Cabrol, N; Hedlund, M; Craft, J

    2013-12-01

    The future exploration of Mars will require access to the subsurface, along with acquisition of samples for scientific analysis and ground-truthing of water ice and mineral reserves for in situ resource utilization. The Icebreaker drill is an integral part of the Icebreaker mission concept to search for life in ice-rich regions on Mars. Since the mission targets Mars Special Regions as defined by the Committee on Space Research (COSPAR), the drill has to meet the appropriate cleanliness standards as requested by NASA's Planetary Protection Office. In addition, the Icebreaker mission carries life-detection instruments; and in turn, the drill and sample delivery system have to meet stringent contamination requirements to prevent false positives. This paper reports on the development and testing of the Icebreaker drill, a 1 m class rotary-percussive drill and triple redundant sample delivery system. The drill acquires subsurface samples in short, approximately 10 cm bites, which makes the sampling system robust and prevents thawing and phase changes in the target materials. Autonomous drilling, sample acquisition, and sample transfer have been successfully demonstrated in Mars analog environments in the Arctic and the Antarctic Dry Valleys, as well as in a Mars environmental chamber. In all environments, the drill has been shown to perform at the "1-1-100-100" level; that is, it drilled to 1 m depth in approximately 1 hour with less than 100 N weight on bit and approximately 100 W of power. The drilled substrate varied and included pure ice, ice-rich regolith with and without rocks and with and without 2% perchlorate, and whole rocks. The drill is currently at a Technology Readiness Level (TRL) of 5. The next-generation Icebreaker drill weighs 10 kg, which is representative of the flightlike model at TRL 5/6.

  10. Reaching 1 m deep on Mars: the Icebreaker drill.

    PubMed

    Zacny, K; Paulsen, G; McKay, C P; Glass, B; Davé, A; Davila, A F; Marinova, M; Mellerowicz, B; Heldmann, J; Stoker, C; Cabrol, N; Hedlund, M; Craft, J

    2013-12-01

    The future exploration of Mars will require access to the subsurface, along with acquisition of samples for scientific analysis and ground-truthing of water ice and mineral reserves for in situ resource utilization. The Icebreaker drill is an integral part of the Icebreaker mission concept to search for life in ice-rich regions on Mars. Since the mission targets Mars Special Regions as defined by the Committee on Space Research (COSPAR), the drill has to meet the appropriate cleanliness standards as requested by NASA's Planetary Protection Office. In addition, the Icebreaker mission carries life-detection instruments; and in turn, the drill and sample delivery system have to meet stringent contamination requirements to prevent false positives. This paper reports on the development and testing of the Icebreaker drill, a 1 m class rotary-percussive drill and triple redundant sample delivery system. The drill acquires subsurface samples in short, approximately 10 cm bites, which makes the sampling system robust and prevents thawing and phase changes in the target materials. Autonomous drilling, sample acquisition, and sample transfer have been successfully demonstrated in Mars analog environments in the Arctic and the Antarctic Dry Valleys, as well as in a Mars environmental chamber. In all environments, the drill has been shown to perform at the "1-1-100-100" level; that is, it drilled to 1 m depth in approximately 1 hour with less than 100 N weight on bit and approximately 100 W of power. The drilled substrate varied and included pure ice, ice-rich regolith with and without rocks and with and without 2% perchlorate, and whole rocks. The drill is currently at a Technology Readiness Level (TRL) of 5. The next-generation Icebreaker drill weighs 10 kg, which is representative of the flightlike model at TRL 5/6. PMID:24303959

  11. Morphospecies and taxonomic sufficiency of benthic megafauna in scientific bottom trawl surveys

    NASA Astrophysics Data System (ADS)

    Brind'Amour, Anik; Laffargue, Pascal; Morin, Jocelyne; Vaz, Sandrine; Foveau, Aurélie; Le Bris, Hervé

    2014-01-01

    Scientific fisheries surveys routinely identify a large diversity of commercial and non-commercial benthic megainvertebrates that could provide useful information for Marine Strategy Framework Directive (MSFD) descriptors. Species is obviously the basic taxonomic level to which most ecological studies and theories refer. Identification at this level of organization is indeed always preferred over any other taxonomic level. Nevertheless, aggregation of species to higher taxonomic levels may be unavoidable sometimes, since errors of identification are known or suspected to occur in many surveys. Using analyses of taxonomic sufficiency (identification of organisms at various taxonomic resolutions) and groups of morphospecies (taxa identified easily by non-experts on the basis of evident morphological traits), this study aims to quantify the loss of ecological information incurred by partial identification of benthic megafauna in bottom trawl surveys in order to put such data to good use. The analyses were conducted on five scientific surveys representing a large range of geographical areas (from 150 km2 to 150 000 km2) and environmental conditions. Results show that genus, family and, particularly, morphospecies are good surrogates for species identification in community analyses. We suggest that bottom trawl surveys can provide reliable megafauna data that may usefully complete those obtained by grab surveys. The use of morphospecies could lead to new strategies, combining different datasets to provide indicators for MSFD descriptors (e.g. D6).

  12. Sensory challenges for trawling bats: Finding transient prey on water surfaces.

    PubMed

    Übernickel, Kirstin; Simon, Ralph; Kalko, Elisabeth K V; Tschapka, Marco

    2016-04-01

    Bats are able to identify obstacles and prey objects based exclusively on acoustic information acquired via echolocation. To assess the echo information potentially available to the trawling bat Noctilio leporinus, prey objects were ensonified with artificial bat calls and deduced echo target strengths (TS) of the reflected signals. The artificial calls consisted either of constant frequency (CF) or frequency modulated (FM) sounds. Detection distances were calculated for call intensities of N. leporinus emitted in the field and in confined space. Measurements of a transient target consisting of a brief water splash and subsequently expanding water ripples revealed that concentrically expanding water ripples can provide sufficiently loud echoes to be detected by trawling bats. Experiments with stationary targets revealed differences in TS depending on the type of signal used (CF or FM). A calculated maximum detection distance between 4.5 and 13.7 m for all measured targets indicates that prey detection in this very loud calling species occurs much earlier than suggested by estimations based on modifications in echolocation or flight behavior. PMID:27106338

  13. Experiment VARIANT onboard Ukrainian satellite SICH-1M - first results

    NASA Astrophysics Data System (ADS)

    Korepanov, V.; Krasnosselskikh, V.; Lizunov, G.; Balikhin, M.; Dudkin, F.; de Feraudy, H.; Kriuchkov, Ye.

    The international experiment VARIANT onboard the Ukrainian remote sensing satellite SICH-1M was launched December 24 2004 Due to the malfunction of the third stage of CYCLONE launcher instead of supposed sun-synchronous circular orbit with 650 km altitude the satellite got elliptic orbit with apogee 640 km perigee 285 km and 83 degrees inclination Because of so low perigee the available attitude control means appeared to be not efficient and as a result the satellite randomly rotates Such onboard conditions made the operation of the main satellite payload - remote sensing instrumentation - impossible But the scientific piggy-back payload of VARIANT experiment appeared to be in good operation state and in spite of severe complications of data processing in non-uniformly rotating frame the telemetered information was reduced to the real values of measured physical parameters In May 2005 due to the on-board battery discharge the satellite ceased its active operation Unfortunately due to episodic and random switching of VARIANT payload the main scientific goals of this project - study of field-aligned currents and monitoring of ionospheric disturbances - appeared not possible to realize But enough big amount of obtained information allows us to fulfil an important technological task of the experiment - comparison of different experimental methods to measure spatial electric current density fluctuations in space plasma Three types of current measuring devices - Rogovsky current coil split Langmuir probe and Faraday cups - were installed onboard the

  14. 50 CFR Figure 5 to Part 679 - Kodiak Island Closure Status for Vessels Using Non-pelagic Trawl Gear

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Kodiak Island Closure Status for Vessels Using Non-pelagic Trawl Gear 5 Figure 5 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE OFF ALASKA...

  15. 50 CFR Figure 5 to Part 679 - Kodiak Island Closure Status for Vessels Using Non-pelagic Trawl Gear

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Kodiak Island Closure Status for Vessels Using Non-pelagic Trawl Gear 5 Figure 5 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE OFF ALASKA...

  16. 50 CFR Figure 5 to Part 679 - Kodiak Island Closure Status for Vessels Using Non-pelagic Trawl Gear

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Kodiak Island Closure Status for Vessels Using Non-pelagic Trawl Gear 5 Figure 5 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE OFF ALASKA...

  17. Estimation of Bottom Trawl Catch Efficiency for Two Demersal Fishes, Atlantic Croaker and White Perch in Chesapeake Bay

    EPA Science Inventory

    We present an efficiency analysis of a fisheries-independent demersal trawl survey in Chesapeake Bay, the largest estuary in the United States, that is presently being used for multi-species fisheries assessment and management. The manuscript presents an in situ analysis of demer...

  18. 50 CFR Figure 5 to Part 679 - Kodiak Island Closure Status for Vessels Using Non-pelagic Trawl Gear

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Kodiak Island Closure Status for Vessels Using Non-pelagic Trawl Gear 5 Figure 5 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE OFF ALASKA...

  19. 75 FR 12463 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-03-16

    ... harvest specifications for groundfish in the BSAI (74 FR 7359, February 17, 2009) and inseason adjustment (74 FR 68717, December 29, 2009). In accordance with Sec. 679.20(d)(1)(i), the Administrator, Alaska... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Bering Sea and...

  20. Biological and physical oceanographic observations pertaining to the trawl fishery in a region of persistent coastal upwelling

    NASA Technical Reports Server (NTRS)

    Howe, J. T.; Gibson, D. B.; Evans, T. O.; Breaker, L.; Wrigley, R. C.; Broenkow, W. W.

    1981-01-01

    An upwelling episode in the Point Sal region of the central California coast is examined by using data obtained by a data buoy. The episodes was interrupted by the abrupt abatement of the strong wind which promotes coastal upwelling. The mean hourly upwelling index is calculated to be higher than the 20 year mean monthly value. During 3 days of light wind commercial bottom trawl operations were possible. Shipboard estimates of chlorophyll content in surface waters during trawling show the high concentrations that are indicative of a rich biomass of phytoplankton, a result of the upwelling episode. Satellite imagery shows the extent of the upwelling water to be of the order of 100 km offshore; the result of many upwelling episodes. Shipboard echo sounder data show the presence of various delmersal species and of zooplakton; the latter graze on the phytoplankton in the upper euphotic layers. The fish catch data are recorded according to species for 2 days of trawling, and the catch per trawl hour is recorded.

  1. 75 FR 4684 - Fisheries off West Coast States; Pacific Coast Groundfish Fishery; Data Collection for the Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-01-29

    ...' Northwest Fisheries Science Center's Pacific whiting observer data from NORPAC (a database of North Pacific... Commission's PacFIN database and NMFS' Northwest Fisheries Science Center's Pacific whiting observer data... West Coast States; Pacific Coast Groundfish Fishery; Data Collection for the Trawl...

  2. 78 FR 18528 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-27

    ... established by the final 2012 and 2013 harvest specifications for groundfish of the GOA (77 FR 15194, March 14, 2012) and inseason adjustment to the final 2013 harvest specifications for Pacific cod (78 FR 267... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Central Regulatory Area...

  3. 78 FR 11790 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-02-20

    ... GOA (77 FR 15194, March 14, 2012) and inseason adjustment to the final 2013 harvest specifications for Pacific cod (78 FR 267, January 3, 2013). In accordance with Sec. 679.20(d)(1)(i), the Administrator... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Western Regulatory Area...

  4. 77 FR 75966 - Control Date for Qualifying Landings History in the Central Gulf of Alaska Trawl Groundfish...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-12-26

    ... National Oceanic and Atmospheric Administration 50 CFR Part 679 RIN 0648-BC80 Control Date for Qualifying Landings History in the Central Gulf of Alaska Trawl Groundfish Fisheries AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric Administration (NOAA), Commerce. ACTION: Advance...

  5. Visual surveys can reveal rather different 'pictures' of fish densities: Comparison of trawl and video camera surveys in the Rockall Bank, NE Atlantic Ocean

    NASA Astrophysics Data System (ADS)

    McIntyre, F. D.; Neat, F.; Collie, N.; Stewart, M.; Fernandes, P. G.

    2015-01-01

    Visual surveys allow non-invasive sampling of organisms in the marine environment which is of particular importance in deep-sea habitats that are vulnerable to damage caused by destructive sampling devices such as bottom trawls. To enable visual surveying at depths greater than 200 m we used a deep towed video camera system, to survey large areas around the Rockall Bank in the North East Atlantic. The area of seabed sampled was similar to that sampled by a bottom trawl, enabling samples from the towed video camera system to be compared with trawl sampling to quantitatively assess the numerical density of deep-water fish populations. The two survey methods provided different results for certain fish taxa and comparable results for others. Fish that exhibited a detectable avoidance behaviour to the towed video camera system, such as the Chimaeridae, resulted in mean density estimates that were significantly lower (121 fish/km2) than those determined by trawl sampling (839 fish/km2). On the other hand, skates and rays showed no reaction to the lights in the towed body of the camera system, and mean density estimates of these were an order of magnitude higher (64 fish/km2) than the trawl (5 fish/km2). This is probably because these fish can pass under the footrope of the trawl due to their flat body shape lying close to the seabed but are easily detected by the benign towed video camera system. For other species, such as Molva sp, estimates of mean density were comparable between the two survey methods (towed camera, 62 fish/km2; trawl, 73 fish/km2). The towed video camera system presented here can be used as an alternative benign method for providing indices of abundance for species such as ling in areas closed to trawling, or for those fish that are poorly monitored by trawl surveying in any area, such as the skates and rays.

  6. Deep Vision: An In-Trawl Stereo Camera Makes a Step Forward in Monitoring the Pelagic Community

    PubMed Central

    Underwood, Melanie J.; Rosen, Shale; Engås, Arill; Eriksen, Elena

    2014-01-01

    Ecosystem surveys are carried out annually in the Barents Sea by Russia and Norway to monitor the spatial distribution of ecosystem components and to study population dynamics. One component of the survey is mapping the upper pelagic zone using a trawl towed at several depths. However, the current technique with a single codend does not provide fine-scale spatial data needed to directly study species overlaps. An in-trawl camera system, Deep Vision, was mounted in front of the codend in order to acquire continuous images of all organisms passing. It was possible to identify and quantify of most young-of-the-year fish (e.g. Gadus morhua, Boreogadus saida and Reinhardtius hippoglossoides) and zooplankton, including Ctenophora, which are usually damaged in the codend. The system showed potential for measuring the length of small organisms and also recorded the vertical and horizontal positions where individuals were imaged. Young-of-the-year fish were difficult to identify when passing the camera at maximum range and to quantify during high densities. In addition, a large number of fish with damaged opercula were observed passing the Deep Vision camera during heaving; suggesting individuals had become entangled in meshes farther forward in the trawl. This indicates that unknown numbers of fish are probably lost in forward sections of the trawl and that the heaving procedure may influence the number of fish entering the codend, with implications for abundance indices and understanding population dynamics. This study suggests modifications to the Deep Vision and the trawl to increase our understanding of the population dynamics. PMID:25393121

  7. Deep vision: an in-trawl stereo camera makes a step forward in monitoring the pelagic community.

    PubMed

    Underwood, Melanie J; Rosen, Shale; Engås, Arill; Eriksen, Elena

    2014-01-01

    Ecosystem surveys are carried out annually in the Barents Sea by Russia and Norway to monitor the spatial distribution of ecosystem components and to study population dynamics. One component of the survey is mapping the upper pelagic zone using a trawl towed at several depths. However, the current technique with a single codend does not provide fine-scale spatial data needed to directly study species overlaps. An in-trawl camera system, Deep Vision, was mounted in front of the codend in order to acquire continuous images of all organisms passing. It was possible to identify and quantify of most young-of-the-year fish (e.g. Gadus morhua, Boreogadus saida and Reinhardtius hippoglossoides) and zooplankton, including Ctenophora, which are usually damaged in the codend. The system showed potential for measuring the length of small organisms and also recorded the vertical and horizontal positions where individuals were imaged. Young-of-the-year fish were difficult to identify when passing the camera at maximum range and to quantify during high densities. In addition, a large number of fish with damaged opercula were observed passing the Deep Vision camera during heaving; suggesting individuals had become entangled in meshes farther forward in the trawl. This indicates that unknown numbers of fish are probably lost in forward sections of the trawl and that the heaving procedure may influence the number of fish entering the codend, with implications for abundance indices and understanding population dynamics. This study suggests modifications to the Deep Vision and the trawl to increase our understanding of the population dynamics. PMID:25393121

  8. Beam-Beam Interactions

    SciTech Connect

    Sramek, Christopher

    2003-09-05

    At the interaction point of a particle accelerator, various phenomena occur which are known as beam-beam effects. Incident bunches of electrons (or positrons) experience strong electromagnetic fields from the opposing bunches, which leads to electron deflection, beamstrahlung and the creation of electron/positron pairs and hadrons due to two-photon exchange. In addition, the beams experience a ''pinch effect'' which focuses each beam and results in either a reduction or expansion of their vertical size. Finally, if a beam's disruption parameter is too large, the beam can develop a sinusoidal distortion, or two-stream (kink) instability. This project simulated and studied these effects as they relate to luminosity, deflection angles and energy loss in order to optimize beam parameters for the Next Linear Collider (NLC). Using the simulation program Guinea-Pig, luminosity, deflection angle and beam energy data was acquired for different levels of beam offset and distortion. Standard deflection curves and luminosity plots agreed with theoretical models but also made clear the difficulties of e-e- feedback. Simulations emphasizing kink instability in modulated and straight beam collisions followed qualitative behavioral predictions and roughly fit recent analytic calculations. Finally, a study of e-e- collisions under design constraints for the NLC provided new estimates of how luminosity, beamstrahlung energy loss, upsilon parameter and deflection curve width scale with beam spotsizes.

  9. BEAM-BEAM 2003 SUMMARY.

    SciTech Connect

    FISCHER,W.SEN,T.

    2003-05-19

    This paper summarizes the presentations and discussions of the Beam-Beam'03 workshop, held in Montauk, Long Island, from May 19 to 23, 2003. Presentations and discussions focused on halo generation from beam-beam interactions; beam-beam limits, especially coherent limits and their effects on existing and future hadron colliders; beam-beam compensation techniques, particularly for long-range interactions; and beam-beam study tools in theory, simulation, and experiment.

  10. Common Dolphin (Delphinus delphis) Bycatch in New Zealand Commercial Trawl Fisheries

    PubMed Central

    Thompson, Finlay N.; Abraham, Edward R.; Berkenbusch, Katrin

    2013-01-01

    Marine mammals are regularly reported as bycatch in commercial and artisanal fisheries, but data are often insufficient to allow assessment of these incidental mortalities. Observer coverage of the mackerel trawl fishery in New Zealand waters between 1995 and 2011 allowed evaluation of common dolphin Delphinus delphis bycatch on the North Island west coast, where this species is the most frequently caught cetacean. Observer data were used to develop a statistical model to estimate total captures and explore covariates related to captures. A two-stage Bayesian hurdle model was used, with a logistic generalised linear model predicting whether any common dolphin captures occurred on a given tow of the net, and a zero-truncated Poisson distribution to estimate the number of dolphin captures, given that there was a capture event. Over the 16-year study period, there were 119 common dolphin captures reported on 4299 observed tows. Capture events frequently involved more than one individual, with a maximum of nine common dolphin observed caught in a single tow. There was a peak of 141 estimated common dolphin captures (95% c.i.: 56 to 276; 6.27 captures per 100 tows) in 2002–03, following the marked expansion in annual effort in this fishery to over 2000 tows. Subsequently, the number of captures fluctuated although fishing effort remained relatively high. Of the observed capture events, 60% were during trawls where the top of the net (headline) was <40 m below the surface, and the model determined that this covariate best explained common dolphin captures. Increasing headline depth by 21 m would halve the probability of a dolphin capture event on a tow. While lack of abundance data prevents assessment of the impact of these mortalities on the local common dolphin population, a clear recommendation from this study is the increasing of headline depth to reduce common dolphin captures. PMID:23717614

  11. Beam rotation and shear in a large electron beam diode

    SciTech Connect

    Mansfield, C.R.; Oona, H.; Shurter, R.P.

    1990-01-01

    The time averaged electron beam current distribution of one of the electron guns of the Large Aperture Module (LAM) of the Aurora laser was measured as part of a larger set of experiments designed to study the electron beam transport to and energy deposition in the LAM laser chamber. The LAM laser chamber has a 1-m {times} 1-m aperture and is pumped from two sides along a 2-m length. A 10 ga. stainless steel sheet was placed inside the laser chamber and served multiple purposes. First, it was used to convert high energy electrons into X-rays in order to make radiograms of the electron beam. Second, the sheet was used as a Faraday cup to measure the total beam current. Third, individual Faraday cups were mounted on the plate to sample the time history of the electron beam at various positions. Each of the LAM electron gun diodes produces a beam of 750 kV electrons with a total current of about 500 kA which is relatively uniform over the cathode area of 1 m {times} 2 m. An applied magnetic field of about 1300 Gauss is used to prevent pinch of the beam during beam transport.

  12. Impact of Natural (Storm) and Anthropogenic (Trawl) Resuspension the Sediment Transport on the Gulf of Lion's Shelf (NW Mediterranean)

    NASA Astrophysics Data System (ADS)

    Ferre, B.; Durrieu de Madron, X.; Estournel, C.; Ulses, C.; Le Corre, G.

    2006-12-01

    Modern sediment deposits on continental margins form a vast reservoir of particulate matter that is regularly affected by resuspension processes. On shelves with strong fishing activity, resuspension by bottom trawling processes can modify the scale of natural disturbance by waves and currents. Recent field data shows that the impact of bottom trawls on the resuspension of the fine sediments per unit surface is comparable with that of the largest storms. We assessed the impact of both natural and anthropogenic processes on the dispersal of river-borne particles and shelf sediments on the Gulf of Lion's Shelf. Realistic numerical simulations of resuspension and transport forced by currents and waves or by a fleet of bottom trawlers were developed. Simulations were conducted for a 16-month period to characterize the seasonal variability. The sediment dynamics takes into account bed armoring, ripple geometry and the cohesive and non-cohesive characteristics of the sediment. Essential but uncertain parameters (clay content, erosion fluxes and critical shear stress for cohesive sediment) were set with existing data. Resuspension by waves and currents is controlled by the shear stress, whereas resuspension by the bottom trawler fleet is controlled by its density and distribution. Natural resuspension by waves and currents mostly occurs during short winter episodes, and is concentrated on the inner-shelf. Trawling-induced resuspension, in contrast, occurs regularly throughout the year and is concentrated on the outer shelf. The total annual net resuspension by trawls (8×106 T y-1 is four orders of magnitude lower than the resuspension induced by waves and currents (4×1010 T y-1. However, because trawled regions are located on the outer shelf, closer to the continental slope, export of fine sediment resuspended by trawls (0.6×106 T y-1 is only one order of magnitude lower than export associated with natural resuspension (8×106 T y-1. A simulation combining both

  13. Evaluation of New Zealand's high-seas bottom trawl closures using predictive habitat models and quantitative risk assessment.

    PubMed

    Penney, Andrew J; Guinotte, John M

    2013-01-01

    United Nations General Assembly Resolution 61/105 on sustainable fisheries (UNGA 2007) establishes three difficult questions for participants in high-seas bottom fisheries to answer: 1) Where are vulnerable marine systems (VMEs) likely to occur?; 2) What is the likelihood of fisheries interaction with these VMEs?; and 3) What might qualify as adequate conservation and management measures to prevent significant adverse impacts? This paper develops an approach to answering these questions for bottom trawling activities in the Convention Area of the South Pacific Regional Fisheries Management Organisation (SPRFMO) within a quantitative risk assessment and cost : benefit analysis framework. The predicted distribution of deep-sea corals from habitat suitability models is used to answer the first question. Distribution of historical bottom trawl effort is used to answer the second, with estimates of seabed areas swept by bottom trawlers being used to develop discounting factors for reduced biodiversity in previously fished areas. These are used in a quantitative ecological risk assessment approach to guide spatial protection planning to address the third question. The coral VME likelihood (average, discounted, predicted coral habitat suitability) of existing spatial closures implemented by New Zealand within the SPRFMO area is evaluated. Historical catch is used as a measure of cost to industry in a cost : benefit analysis of alternative spatial closure scenarios. Results indicate that current closures within the New Zealand SPRFMO area bottom trawl footprint are suboptimal for protection of VMEs. Examples of alternative trawl closure scenarios are provided to illustrate how the approach could be used to optimise protection of VMEs under chosen management objectives, balancing protection of VMEs against economic loss to commercial fishers from closure of historically fished areas. PMID:24358162

  14. Interactions between a Trawl Fishery and Spatial Closures for Biodiversity Conservation in the Great Barrier Reef World Heritage Area, Australia

    PubMed Central

    Grech, Alana; Coles, Rob

    2011-01-01

    Background The Queensland East Coast Otter Trawl Fishery (ECOTF) for penaeid shrimp fishes within Australia's Great Barrier Reef World Heritage Area (GBRWHA). The past decade has seen the implementation of conservation and fisheries management strategies to reduce the impact of the ECOTF on the seabed and improve biodiversity conservation. New information from electronic vessel location monitoring systems (VMS) provides an opportunity to review the interactions between the ECOTF and spatial closures for biodiversity conservation. Methodology and Results We used fishing metrics and spatial information on the distribution of closures and modelled VMS data in a geographical information system (GIS) to assess change in effort of the trawl fishery from 2001–2009 and to quantify the exposure of 70 reef, non-reef and deep water bioregions to trawl fishing. The number of trawlers and the number of days fished almost halved between 2001 and 2009 and new spatial closures introduced in 2004 reduced the area zoned available for trawl fishing by 33%. However, we found that there was only a relatively minor change in the spatial footprint of the fishery as a result of new spatial closures. Non-reef bioregions benefited the most from new spatial closures followed by deep and reef bioregions. Conclusions/Significance Although the catch of non target species remains an issue of concern for fisheries management, the small spatial footprint of the ECOTF relative to the size of the GBRWHA means that the impact on benthic habitats is likely to be negligible. The decline in effort as a result of fishing industry structural adjustment, increasing variable costs and business decisions of fishers is likely to continue a trend to fish only in the most productive areas. This will provide protection for most benthic habitats without any further legislative or management intervention. PMID:21695155

  15. Evaluation of New Zealand’s High-Seas Bottom Trawl Closures Using Predictive Habitat Models and Quantitative Risk Assessment

    PubMed Central

    Penney, Andrew J.; Guinotte, John M.

    2013-01-01

    United Nations General Assembly Resolution 61/105 on sustainable fisheries (UNGA 2007) establishes three difficult questions for participants in high-seas bottom fisheries to answer: 1) Where are vulnerable marine systems (VMEs) likely to occur?; 2) What is the likelihood of fisheries interaction with these VMEs?; and 3) What might qualify as adequate conservation and management measures to prevent significant adverse impacts? This paper develops an approach to answering these questions for bottom trawling activities in the Convention Area of the South Pacific Regional Fisheries Management Organisation (SPRFMO) within a quantitative risk assessment and cost : benefit analysis framework. The predicted distribution of deep-sea corals from habitat suitability models is used to answer the first question. Distribution of historical bottom trawl effort is used to answer the second, with estimates of seabed areas swept by bottom trawlers being used to develop discounting factors for reduced biodiversity in previously fished areas. These are used in a quantitative ecological risk assessment approach to guide spatial protection planning to address the third question. The coral VME likelihood (average, discounted, predicted coral habitat suitability) of existing spatial closures implemented by New Zealand within the SPRFMO area is evaluated. Historical catch is used as a measure of cost to industry in a cost : benefit analysis of alternative spatial closure scenarios. Results indicate that current closures within the New Zealand SPRFMO area bottom trawl footprint are suboptimal for protection of VMEs. Examples of alternative trawl closure scenarios are provided to illustrate how the approach could be used to optimise protection of VMEs under chosen management objectives, balancing protection of VMEs against economic loss to commercial fishers from closure of historically fished areas. PMID:24358162

  16. Effects of Modified Handling on the Physiological Stress of Trawled-and-Discarded Yellowfin Bream (Acanthopagrus australis)

    PubMed Central

    Millar, Russell Brian

    2015-01-01

    Modified handling is often claimed to reduce (sub-)lethal impacts among organisms caught-and-released in fisheries. Improving welfare of discarded fish warrants investigation, when their survival is of both economic and ecological importance. In this study, juvenile yellowfin bream (Acanthopagrus australis) were trawled in an Australian penaeid fishery and then discarded after on-board sorting in either dry or water-filled (modified) trays and with delays in starting sorting of either 2 or 15 mins. Blood plasma cortisol, glucose and potassium were sampled immediately from some yellowfin bream, while others were placed into cages (with controls) and sampled after five days. Irrespective of their on-board handling, all trawled fish incurred a relatively high acute stress response (i.e. an increase in Mean ± SE cortisol from a baseline of <4 to 122.0 ± 14.9 ng/mL) that was mostly attributed to the trawling process, and exacerbated by variation in key parameters (low salinity, changes in water temperature and the presence of jellyfish Catostylus mosaicus in catches). When C. mosaicus was present, the potassium concentrations of fish sampled immediately after sorting were significantly elevated, possibly due to nematocyst contact and subsequent inhibition of ion pumps or cytolysis. Stress also increased during handling in response to warmer air temperatures and longer exposure. While most fish had substantially recovered by 120 hours after discarding, deploying selective trawls (to reduce jellyfish) for short periods and then quickly sorting catches in water would benefit discard welfare. PMID:26098900

  17. Modeling the impacts of bottom trawling and the subsequent recovery rates of sponges and corals in the Aleutian Islands, Alaska

    NASA Astrophysics Data System (ADS)

    Rooper, Christopher N.; Wilkins, Mark E.; Rose, Craig S.; Coon, Catherine

    2011-11-01

    The abundance of some marine fish species are correlated to the abundance of habitat-forming benthic organisms such as sponges and corals. A concern for fisheries management agencies is the recovery of these benthic invertebrates from removal or mortality from bottom trawling and other commercial fisheries activities. Using a logistic model, observations of available substrate and data from bottom trawl surveys of the Aleutian Islands, Alaska, we estimated recovery rates of sponges and corals following removal. The model predicted the observed sponge and coral catch in bottom trawl surveys relatively accurately ( R2=0.38 and 0.46). For sponges, the results show that intrinsic growth rates were slow ( r=0.107 yr -1). Results show that intrinsic growth rates of corals were also slow ( r=0.062 yr -1). The best models for corals and sponges were models that did not include the impacts of commercial fishing removals. Subsequent recovery times for both taxa were also predicted to be slow. Mortality of 67% of the initial sponge biomass would recover to 80% of the original biomass after 20 years, while mortality of 67% of the coral biomass would recover to 80% of the original biomass after 34 years. The modeled recovery times were consistent with previous studies in estimating that recovery times were of the order of decades, however improved data from directed studies would no doubt improve parameter estimates and reduce the uncertainty in the model results. Given their role as a major ecosystem component and potential habitat for marine fish, damage and removal of sponges and corals must be considered when estimating the impacts of commercial bottom trawling on the seafloor.

  18. Focused ion beam system

    DOEpatents

    Leung, K.; Gough, R.A.; Ji, Q.; Lee, Y.Y.

    1999-08-31

    A focused ion beam (FIB) system produces a final beam spot size down to 0.1 {mu}m or less and an ion beam output current on the order of microamps. The FIB system increases ion source brightness by properly configuring the first (plasma) and second (extraction) electrodes. The first electrode is configured to have a high aperture diameter to electrode thickness aspect ratio. Additional accelerator and focusing electrodes are used to produce the final beam. As few as five electrodes can be used, providing a very compact FIB system with a length down to only 20 mm. Multibeamlet arrangements with a single ion source can be produced to increase throughput. The FIB system can be used for nanolithography and doping applications for fabrication of semiconductor devices with minimum feature sizes of 0.1 m or less. 13 figs.

  19. Identification and evaluation of shark bycatch in Georgia’s commercial shrimp trawl fishery with implications for management

    USGS Publications Warehouse

    Belcher, C.N.; Jennings, Cecil A.

    2011-01-01

    Many US states have recreational and commercial fisheries that occur in nursery areas occupied by subadult sharks and can potentially affect their survival. Georgia is one of few US states without a directed commercial shark fishery, but the state has a large, nearshore penaeid shrimp trawl fishery in which small sharks occur as bycatch. During our 1995-1998 investigation of bycatch in fishery-dependent sampling events, 34% of 127 trawls contained sharks. This bycatch totalled 217 individuals from six species, with Atlantic sharpnose shark, Rhizoprionodon terraenovae (Richardson), the most common and finetooth shark, Carcharhinus isodon (Müller & Henle) and spinner shark, Carcharhinus brevipinna (Müller & Henle), the least common. The highest catch rates for sharks occurred during June and July and coincided with the peak months of the pupping season for many species. Trawl tow speed and tow time did not significantly influence catch rates for shark species. Gear configurations [net type, turtle excluder device (TED), bycatch reduction device] affected catch rates for shark species. Results of this study indicate gear restrictions, a delayed season opening, or reduced bar spacing on TEDs may reduce shark bycatch in this fishery.

  20. Inferring Fish Escape Behaviour in Trawls Based on Catch Comparison Data: Model Development and Evaluation Based on Data from Skagerrak, Denmark

    PubMed Central

    Karlsen, Junita Diana

    2014-01-01

    During the fishing process, fish react to a trawl with a series of behaviours that often are species and size specific. Thus, a thorough understanding of fish behaviour in relation to fishing gear and a scientific understanding of the ability of different gear designs to utilize or stimulate various behavioural patterns during the catching process are essential for developing more efficient, selective, and environmentally friendly trawls. Although many behavioural studies using optical and acoustic observation systems have been conducted, harsh observation conditions on the fishing grounds often hamper the ability to directly observe fish behaviour in relation to fishing gear. As an alternative to optical and acoustic methods, we developed and applied a new mathematical model to catch data to extract detailed and quantitative information about species- and size-dependent escape behaviour in towed fishing gear such as trawls. We used catch comparison data collected with a twin trawl setup; the only difference between the two trawls was that a 12 m long upper section was replaced with 800 mm diamond meshes in one of them. We investigated the length-based escape behaviour of cod (Gadus morhua), haddock (Melanogrammus aeglefinus), saithe (Pollachius virens), witch flounder (Glyptocephalus cynoglossus), and lemon sole (Microstomus kitt) and quantified the extent to which behavioural responses set limits for the large mesh panel’s selective efficiency. Around 85% of saithe, 80% of haddock, 44% of witch flounder, 55% of lemon sole, and 55% of cod (below 68 cm) contacted the large mesh panel and escaped. We also demonstrated the need to account for potential selectivity in the trawl body, as it can bias the assessment of length-based escape behaviour. Our indirect assessment of fish behaviour was in agreement with the direct observations made for the same species in a similar section of the trawl body reported in the literature. PMID:24586403

  1. Inferring fish escape behaviour in trawls based on catch comparison data: model development and evaluation based on data from Skagerrak, Denmark.

    PubMed

    Krag, Ludvig Ahm; Herrmann, Bent; Karlsen, Junita Diana

    2014-01-01

    During the fishing process, fish react to a trawl with a series of behaviours that often are species and size specific. Thus, a thorough understanding of fish behaviour in relation to fishing gear and a scientific understanding of the ability of different gear designs to utilize or stimulate various behavioural patterns during the catching process are essential for developing more efficient, selective, and environmentally friendly trawls. Although many behavioural studies using optical and acoustic observation systems have been conducted, harsh observation conditions on the fishing grounds often hamper the ability to directly observe fish behaviour in relation to fishing gear. As an alternative to optical and acoustic methods, we developed and applied a new mathematical model to catch data to extract detailed and quantitative information about species- and size-dependent escape behaviour in towed fishing gear such as trawls. We used catch comparison data collected with a twin trawl setup; the only difference between the two trawls was that a 12 m long upper section was replaced with 800 mm diamond meshes in one of them. We investigated the length-based escape behaviour of cod (Gadus morhua), haddock (Melanogrammus aeglefinus), saithe (Pollachius virens), witch flounder (Glyptocephalus cynoglossus), and lemon sole (Microstomus kitt) and quantified the extent to which behavioural responses set limits for the large mesh panel's selective efficiency. Around 85% of saithe, 80% of haddock, 44% of witch flounder, 55% of lemon sole, and 55% of cod (below 68 cm) contacted the large mesh panel and escaped. We also demonstrated the need to account for potential selectivity in the trawl body, as it can bias the assessment of length-based escape behaviour. Our indirect assessment of fish behaviour was in agreement with the direct observations made for the same species in a similar section of the trawl body reported in the literature.

  2. Discarding of plaice (Pleuronectes platessa) in the Danish North Sea trawl fishery

    NASA Astrophysics Data System (ADS)

    Madsen, Niels; Feekings, Jordan; Lewy, Peter

    2013-01-01

    Plaice (Pleuronectes platessa) plays an important role in the North Sea benthic ecosystem and is by weight the most important commercial flatfish species in the North Sea demersal fishery. There is a high discarding of plaice in the active demersal fisheries in the North Sea. The change in fisheries management towards a more ecosystem based approach, together with a greater focus on sustainability, has caused a severe need for action. Subsequently, the European Commission is preparing regulations to reduce or even ban discards. The trawl fisheries are commercially the most important Danish fishery targeting plaice. Here we analyse discard data collected onboard Danish vessels in the period from 1998 to 2008. We describe the general patterns in these data by dividing them into three mesh size categories: 80-99 mm, 100-119 mm and ≥ 120 mm to reflect implemented technical measures of relevance. We analyse the landed and discarded portions in these mesh size categories and link the discarding to the minimum landing size. We employed a GAM model to assess how discarding of plaice below the minimum landing size is connected to relevant factors that could be of relevance from a management perspective. We identified a statistical significant effect of mesh size category and area. We discuss the results in relation to potential mitigation measures to be implemented in future fisheries management strategies.

  3. Axisymmetric trawl cod-ends made from netting of a generalized mesh shape

    NASA Astrophysics Data System (ADS)

    O'Neill, F. G.

    1999-06-01

    The equations governing the geometry of axisymmetric trawl cod-ends made from netting of meshes of a particular generalized structure are derived. 6rom this, by suitable setting of the initial mesh bar lengths, the equations governing the geometry of cod-ends that are of importance to the fishing industry can be readily deduced. It is assumed that arbitrary membrane forces act normal to the edges of the mesh elements, that there is no shear force acting on the edge of a mesh element and that the twine that makes up the netting is extensible. The case where there is slackness in the mesh bars in the circumferential direction is dealt with and it is demonstrated how the finite structure of a knot can be taken into account. The case where the membrane forces arise solely as a result of and can be expressed by the appropriate components of the tensions in the mesh bars is also examined and numerical solutions are found for a range of examples.

  4. High Degree of HIV-1 Group M (HIV-1M) Genetic Diversity within Circulating Recombinant Forms: Insight into the Early Events of HIV-1M Evolution

    PubMed Central

    2015-01-01

    ABSTRACT The existence of various highly divergent HIV-1 lineages and of recombination-derived sequence tracts of indeterminate origin within established circulating recombinant forms (CRFs) strongly suggests that HIV-1 group M (HIV-1M) diversity is not fully represented under the current classification system. Here we used a fully exploratory screen for recombination on a set of 480 near-full-length genomes representing the full known diversity of HIV-1M. We decomposed recombinant sequences into their constituent parts and then used maximum-likelihood phylogenetic analyses of this mostly recombination-free data set to identify rare divergent sequence lineages that fall outside the major named HIV-1M taxonomic groupings. We found that many of the sequence fragments occurring within CRFs (including CRF04_cpx, CRF06_cpx, CRF11_cpx, CRF18_cpx, CRF25_cpx, CRF27_cpx, and CRF49_cpx) are in fact likely derived from divergent unclassified parental lineages that may predate the current subtypes, even though they are presently identified as derived from currently defined HIV-1M subtypes. Our evidence suggests that some of these CRFs are descended predominantly from what were or are major previously unidentified HIV-1M lineages that were likely epidemiologically relevant during the early stages of the HIV-1M epidemic. The restriction of these divergent lineages to the Congo basin suggests that they were less infectious and/or simply not present at the time and place of the initial migratory wave that triggered the global epidemic. IMPORTANCE HIV-1 group M (HIV-1M) likely spread to the rest of the world from the Congo basin in the mid-1900s (N. R. Faria et al., Science 346:56–61, 2014, http://dx.doi.org/10.1126/science.1256739) and is today the principal cause of the AIDS pandemic. Here, we show that large sequence fragments from several HIV-1M circulating recombinant forms (CRFs) are derived from divergent parental lineages that cannot reasonably be classified within the

  5. Increasing sediment accumulation rates in La Fonera (Palamós) submarine canyon axis and their relationship with bottom trawling activities

    NASA Astrophysics Data System (ADS)

    Puig, P.; Martín, J.; Masqué, P.; Palanques, A.

    2015-10-01

    Previous studies conducted in La Fonera (Palamós) submarine canyon (NW Mediterranean) found that trawling activities along the canyon flanks cause resuspension and transport of sediments toward the canyon axis. 210Pb chronology supported by 137Cs dating applied to a sediment core collected at 1750 m in 2002 suggested a doubling of the sediment accumulation rate since the 1970s, coincident with the rapid industrialization of the local trawling fleet. The same canyon area has been revisited a decade later, and new data are consistent with a sedimentary regime shift during the 1970s and also suggest that the accumulation rate during the last decade could be greater than expected, approaching ~2.4 cm yr-1 (compared to ~0.25 cm yr-1 pre-1970s). These results support the hypothesis that commercial bottom trawling can substantially affect sediment dynamics and budgets on continental margins, eventually initiating the formation of anthropogenic depocenters in submarine canyon environments.

  6. Infaunal community responses to a gradient of trawling disturbance and a long-term Fishery Exclusion Zone in the Southern Tyrrhenian Sea

    NASA Astrophysics Data System (ADS)

    Mangano, M. Cristina; Kaiser, Michel J.; Porporato, Erika M. D.; Lambert, Gwladys I.; Rinelli, Paola; Spanò, Nunziacarla

    2014-03-01

    Historically the majority of Mediterranean trawl fisheries occur on the continental shelf with a smaller proportion focused on the shelf slope and deep sea areas. Understanding how trawl fisheries affect the wider ecosystem is an important component of the ecosystem-based approach to fisheries management. In this context the current study examined the impact of the otter trawl fishery on the infaunal communities found on the continental shelf and upper slope off the coast of Sicily and Calabria, Italy. A total of thirty six sites were sampled across a gradient of fishing intensity and from within a large bay from which trawling has been excluded for 22 years. Fishing intensities were ascertained post-hoc from vessel monitoring system data. Seabed characteristics of the sites studied were uniform across the continental shelf and slope areas that were studied, such that the only factor that varied was fishing intensity. The density index (DI) and total number of species (S) were significantly higher in the fishery closure area compared with other continental shelf sites. In particular, bioturbating decapod fauna occurred only within the fishery closure area. Fished sites were dominated primarily by burrowing deposit feeding worms, small bivalves and scavenging biota. In contrast, the response to fishing on the upper slope was less clear. This observation was treated with caution as the power to detect fishing effects was lower for the upper slope sites as a result of possible illegal fishing that had compromised two of the four replicate sites within the closed area. While the present study was able to quantify the effect of the demersal trawl fleet on the benthic infauna of the continental shelf, the effects of trawling on the upper shelf slope remain unclear and warrant further study.

  7. Impact of natural (waves and currents) and anthropogenic (trawl) resuspension on the export of particulate matter to the open ocean: Application to the Gulf of Lion (NW Mediterranean)

    NASA Astrophysics Data System (ADS)

    Ferré, B.; Durrieu de Madron, X.; Estournel, C.; Ulses, C.; Le Corre, G.

    2008-08-01

    Modern sediment deposits on continental margins form a vast reservoir of particulate matter that is regularly affected by resuspension processes. Resuspension by bottom trawling on shelves with strong fishing activity can modify the scale of natural disturbance by waves and currents. Recent field data show that the impact of bottom trawls on fine sediment resuspension per unit surface is comparable with that of the largest storms. We assessed the impact of both natural and anthropogenic processes on the dispersal of riverborne particles and shelf sediments on the Gulf of Lion shelf. We performed realistic numerical simulations of resuspension and transport forced by currents and waves or by a fleet of bottom trawlers. Simulations were conducted for a 16-month period (January 1998-April 1999) to characterise the seasonal variability. The sediment dynamics takes into account bed armoring, ripple geometry and the cohesive and non-cohesive characteristics of the sediments. Essential but uncertain parameters (clay content, erosion fluxes and critical shear stress for cohesive sediment) were set with existing data. Resuspension by waves and currents was controlled by shear stress, whereas resuspension by trawls was controlled by density and distribution of the bottom trawler fleet. Natural resuspension by waves and currents mostly occurred during short seasonal episodes, and was concentrated on the inner shelf. Trawling-induced resuspension, in contrast, occurred regularly throughout the year and was concentrated on the outer shelf. The total annual erosion by trawls (5.6×10 6 t y -1, t for metric tonnes) was four orders of magnitude lower than the erosion induced by waves and currents (35.3×10 9 t y -1). However the net resuspension (erosion/deposition budget) for trawling (0.4×10 6 t y -1) was only one order of magnitude lower than that for waves and currents (9.2×10 6 t y -1). Off-shelf export concerned the finest fraction of the sediment (clays and fine silts

  8. Organic biomarkers in deep-sea regions affected by bottom trawling: pigments, fatty acids, amino acids and carbohydrates in surface sediments from the La Fonera (Palamós) Canyon, NW Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Sañé, E.; Martín, J.; Puig, P.; Palanques, A.

    2012-12-01

    Deep-sea ecosystems are in general adapted to a limited variability of physical conditions, resulting in high vulnerability and slow recovery rates from anthropogenic perturbations such as bottom trawling. Commercial trawling is the most recurrent and pervasive of human impacts on the deep-sea floor, but studies on its consequences on the biogeochemistry of deep-sea sediments are still scarce. Pigments, fatty acids, amino acids and carbohydrates were analyzed in sediments from the flanks of the La Fonera (Palamós) submarine canyon (NW Mediterranean Sea), where a commercial bottom trawling fishery has been active for more than 70 yr. More specifically, we investigated how trawling-induced sediment reworking affects the quality of sedimentary organic matter which reaches the seafloor and accumulates in the sediment column, which is fundamental for the development of benthic communities. Sediment samples were collected during two oceanographic cruises in spring and autumn 2011. The sampled sites included trawl fishing grounds as well as pristine (control) areas. We report that bottom trawling in the flanks of the La Fonera Canyon has caused an alteration of the quality of the organic matter accumulated in the upper 5 cm of the seafloor. The use of a wide pool of biochemical tracers characterized by different reactivity to degradation allowed us to discriminate the long-term effects of trawled-induced sediment reworking from the natural variability caused by the seasonal cycle of production and sinking of biogenic particles. Differences between untrawled and trawled areas were evidenced by labile amino acids, while differences between spring and autumn samples were detected only by the more labile indicators chlorophyll a and mono-unsaturated fatty acids. These results suggest that changes in the biochemical composition of the sedimentary organic matter caused by bottom trawling can be more relevant than those associated with natural seasonality and pose serious

  9. Organic biomarkers in deep-sea regions affected by bottom trawling: pigments, fatty acids, amino acids and carbohydrates in surface sediments from the La Fonera (Palamós) Canyon, NW Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Sañé, E.; Martín, J.; Puig, P.; Palanques, A.

    2013-12-01

    Deep-sea ecosystems are in general adapted to a limited variability of physical conditions, resulting in high vulnerability and slow recovery rates from anthropogenic perturbations such as bottom trawling. Commercial trawling is the most recurrent and pervasive of human impacts on the deep-sea floor, but studies on its consequences on the biogeochemistry of deep-sea sediments are still scarce. Pigments, fatty acids, amino acids and carbohydrates were analysed in sediments from the flanks of the La Fonera (Palamós) submarine canyon (NW Mediterranean Sea), where a commercial bottom trawling fishery has been active for more than 70 yr. More specifically, we investigated how trawling-induced sediment reworking affects the quality of sedimentary organic matter which reaches the seafloor and accumulates in the sediment column, which is fundamental for the development of benthic communities. Sediment samples were collected during two oceanographic cruises in spring and autumn 2011. The sampled sites included trawl fishing grounds as well as pristine (control) areas. We report that bottom trawling in the flanks of the La Fonera Canyon has caused an alteration of the quality of the organic matter accumulated in the upper 5 cm of the seafloor. The use of a wide pool of biochemical tracers characterized by different reactivity to degradation allowed for us to discriminate the long-term effects of trawl-induced sediment reworking from the natural variability caused by the seasonal cycle of production and sinking of biogenic particles. Differences between untrawled and trawled areas were evidenced by labile amino acids, while differences between spring and autumn samples were detected only by the more labile indicators chlorophyll a and monounsaturated fatty acids. These results suggest that changes in the biochemical composition of the sedimentary organic matter caused by bottom trawling can be more relevant than those associated with natural seasonality and pose serious

  10. Analyses of trawling track and fishing activity based on the data of vessel monitoring system (VMS): A case study of the single otter trawl vessels in the Zhoushan fishing ground

    NASA Astrophysics Data System (ADS)

    Wang, Yang; Wang, Yingbin; Zheng, Ji

    2015-02-01

    The original purpose of Vessel Monitoring System (VMS) is for enforcement and control of vessel sailing. With the application of VMS in fishing vessels, more and more population dynamic studies have used VMS data to improve the accuracy of fisheries stock assessment. In this paper, we simulated the trawl trajectory under different time intervals using the cubic Hermite spline (cHs) interpolation method based on the VMS data of 8 single otter trawl vessels (totally 36000 data items) fishing in Zhoushan fishing ground from September 2012 to December 2012, and selected the appropriate time interval. We then determined vessels' activities (fishing or non-fishing) by comparing VMS speed data with the corresponding speeds from logbooks. The results showed that the error of simulated trajectory greatly increased with the increase of time intervals of VMS data when they were longer than 30 minutes. Comparing the speeds from VMS with those from the corresponding logbooks, we found that the vessels' speeds were between 2.5 kn and 5.0 kn in fishing. The cHs interpolation method is a new choice for improving the accuracy of estimation of sailing trajectory, and the VMS can be used to determine the vessels' activities with the analysis of their trajectories and speeds. Therefore, when the fishery information is limited, VMS can be one of the important data sources for fisheries stock assessment, and more attention should be paid to its construction and application to fisheries stock assessment and management.

  11. Detection probabilities of electrofishing, hoop nets, and benthic trawls for fishes in two western North American rivers

    USGS Publications Warehouse

    Smith, Christopher D.; Quist, Michael C.; Hardy, Ryan S.

    2015-01-01

    Research comparing different sampling techniques helps improve the efficiency and efficacy of sampling efforts. We compared the effectiveness of three sampling techniques (small-mesh hoop nets, benthic trawls, boat-mounted electrofishing) for 30 species in the Green (WY, USA) and Kootenai (ID, USA) rivers by estimating conditional detection probabilities (probability of detecting a species given its presence at a site). Electrofishing had the highest detection probabilities (generally greater than 0.60) for most species (88%), but hoop nets also had high detectability for several taxa (e.g., adult burbot Lota lota, juvenile northern pikeminnow Ptychocheilus oregonensis). Benthic trawls had low detection probabilities (<0.05) for most taxa (84%). Gear-specific effects were present for most species indicating large differences in gear effectiveness among techniques. In addition to gear effects, habitat characteristics also influenced detectability of fishes. Most species-specific habitat relationships were idiosyncratic and reflected the ecology of the species. Overall findings of our study indicate that boat-mounted electrofishing and hoop nets are the most effective techniques for sampling fish assemblages in large, coldwater rivers.

  12. Near full-length HIV type 1M genomic sequences from Cameroon

    PubMed Central

    Tongo, Marcel; Dorfman, Jeffrey R.; Abrahams, Melissa-Rose; Mpoudi-Ngole, Eitel; Burgers, Wendy A.; Martin, Darren P.

    2015-01-01

    Background: Cameroon is the country in which HIV-1 group M (HIV-1M) likely originated and is today a major hotspot of HIV-1M genetic diversity. It remains unclear, however, whether the highly divergent HIV-1M lineages found in this country arose during the earliest phases of the global HIV-1M epidemic, or whether they arose more recently as a result of recombination events between globally circulating HIV-1M lineages. Methodology: To differentiate between these two possibilities, we performed phylogenetic analyses of the near full genome sequences of nine newly sequenced divergent HIV-1M isolates and 15 previously identified, apparently unique recombinant forms (URFs) from Cameroon. Results: Although two of the new genome sequences were clearly classifiable within subtype G, the remaining seven were highly divergent and phylogenetically branched either outside of, or very near the bases of clades containing the well characterised globally circulating viral lineages that they were most closely related to. Recombination analyses further revealed that these divergent viruses were likely complex URFs. We show, however that substantial portions (>1 Kb) of three of the new genome sequences and 15 of the previously characterised Cameroonian URFs have apparently been derived from divergent parental viruses that branch phylogenetically near the bases of the major HIV-1M clades. Conclusions and implications: Our analyses indicate the presence in Cameroon of contemporary descendants of numerous early-diverging HIV-1M lineages. Further efforts to sample and sequence viruses from such lineages could be crucial both for retracing the earliest evolutionary steps during the emergence of HIV-1M in humans, and accurately reconstructing the ancestral sequences of the major globally circulating HIV-1M lineages. PMID:26354000

  13. Pair-Trawl Detection of PIT-Tagged Juvenile Salmonids Migrating in the Columbia River Estuary, 2008 Report of Research.

    SciTech Connect

    Magie, Robert J.; Morris, Matthew S.; Ledgerwood, Richard D.

    2009-06-03

    In 2008, we sampled migrating juvenile Pacific salmonids Oncorhynchus spp. tagged with passive integrated transponder (PIT) tags using a surface pair trawl in the upper Columbia River estuary (rkm 61-83). The cod-end of the trawl was replaced with a cylindrical PIT-tag detection antenna with an 86-cm-diameter fish-passage opening and two detection coils connected in series. The pair trawl was 105 m long with a 91.5-m opening between the wings and a sample depth of 4.9 m. Also during 2008, we finalized the development of a prototype 'matrix' antenna, which was larger than previous antennas by a considerable magnitude. The matrix antenna consisted of 6 coils: a 3-coil front component and a 3-coil rear component, which were separated by 1.5-m of net mesh. The fish-passage opening was 2.5 m wide by 3.0 m tall and was attached to a standard-size pair trawl net. Intermittent sampling with a single crew began on 7 March and targeted yearling Chinook salmon O. tshawytscha and steelhead O. mykiss. Daily sampling using two crews began on 30 April and continued through 14 June; during this period we detected 2.7% of all juvenile salmonids previously detected at Bonneville Dam--a measure of sample efficiency. Sampling with a single crew continued through 20 August and targeted subyearling Chinook salmon. We detected 7,397 yearling Chinook salmon, 2,735 subyearling Chinook salmon, 291 coho salmon O. kisutch, 5,950 steelhead, and 122 sockeye salmon O. nerka in the upper estuary. We deployed the matrix antenna system and the older, cylindrical antenna system (86-cm-diameter fish-passage opening) simultaneously in mid-May 2008 to test matrix detection efficiency. The cylindrical antenna system had been used successfully in 2007 and early 2008. Because distribution of migrating salmonids in the estuary changes rapidly, we felt that a tandem sampling effort between the two systems was the only way to truly evaluate comparative detection efficiency. We deployed both systems within 1

  14. Cistanches Herba aqueous extract affecting serum BGP and TRAP and bone marrow Smad1 mRNA, Smad5 mRNA, TGF-β1 mRNA and TIEG1 mRNA expression levels in osteoporosis disease.

    PubMed

    Liang, Hai-Dong; Yu, Fang; Tong, Zhi-Hong; Zhang, Hong-Quan; Liang, Wu

    2013-02-01

    We studied molecular mechanism of Cistanches Herba aqueous extract (CHAE) in ovariectomized (OVX) rats, as an experimental model of postmenopausal osteoporosis. Female rats were either sham-operated or bilaterally OVX; and at 60 days postoperatively. The OVX group (n = 8) received an ovariectomy and treatment with normal saline for 90 days commencing from 20th post ovariectomy day. The ovariectomized +CHAE (OVX + CHAE) group (n = 8) received an ovariectomy and were treated with Cistanches Herba aqueous extract of 100 mg/kg body weight daily for 90 days commencing from 22nd post ovariectomy day. The ovariectomy +CHAE (OVX + CHAE) group (n = 8) received an ovariectomy, and were treated with the of 200 mg/kg body weight daily for 90 days commencing from 20th post ovariectomy day. Serum BGP and TRAP, E2, FSH and LH level, bone marrow Smad1, Smad5, TGF-β1 and TIEG1 mRNA expression levels were examined. Results showed that serum BGP and TRAP, FSH and LH levels were significantly increased, whereas E2, Smad1, Smad5, TGF-β1 and TIEG1 mRNA and proteins expression levels were significantly decreased in OVX rats compared to sham rats. 90 days of CHAE treatment could significantly decrease serum BGP and TRAP, FSH and LH levels, and increase E2, Smad1, Smad5, TGF-β1 and TIEG1 mRNA and proteins expression levels in OVX rats. It can be concluded that CHAE play its protective effect against OVX-induced bone degeneration partly by regulating some bone metabolism related genes, e.g. Smad1, Smad5, TGF-β1 and TIEG1.

  15. 50 CFR Table 35 to Part 679 - Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access...

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Apportionment of Crab PSC and Halibut PSC... 35 to Part 679—Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access Sectors Fishery Year Halibut PSC limit in the BSAI Zone 1 Red king crab PSC limit . . ....

  16. 50 CFR Table 35 to Part 679 - Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access...

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Apportionment of Crab PSC and Halibut PSC... 35 to Part 679—Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access Sectors Fishery Year Halibut PSC limit in the BSAI Zone 1 Red king crab PSC limit . . ....

  17. 50 CFR Table 35 to Part 679 - Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access...

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Apportionment of Crab PSC and Halibut PSC... 35 to Part 679—Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access Sectors Fishery Year Halibut PSC limit in the BSAI Zone 1 Red king crab PSC limit . . ....

  18. 50 CFR Table 35 to Part 679 - Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access...

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Apportionment of Crab PSC and Halibut PSC... 35 to Part 679—Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access Sectors Fishery Year Halibut PSC limit in the BSAI Zone 1 Red king crab PSC limit . . ....

  19. 50 CFR Table 35 to Part 679 - Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access...

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Apportionment of Crab PSC and Halibut PSC... 35 to Part 679—Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access Sectors Fishery Year Halibut PSC limit in the BSAI Zone 1 Red king crab PSC limit . . ....

  20. Comparison of anchovy biomass estimates measured by trawls, egg production methods and hydro-acoustics in the Chesapeake Bay and the Korea Strait

    NASA Astrophysics Data System (ADS)

    Jung, Sukgeun; Houde, Edward D.

    2014-06-01

    We compared estimates of anchovy biomass derived from trawl surveys, egg production method (EPM) and acoustic surveys, conducted in two remote regions. Biomass density of bay anchovy Anchoa mitchilli was estimated in Chesapeake Bay, USA, by trawls, EPM and acoustics from 1989 to 2000. Biomass density of Pacific anchovy Engraulis japonicus was estimated in the Korea Strait using EPM, simulation-based daily cohort analysis and acoustics from 1984 to 2006. Most of the existing estimates already had considered body-size-dependent gear selectivity, highlyvariable instantaneous natural mortality of anchovy eggs, and avoidance of trawl nets by adult anchovy. Despite great variability in the ratio of trawl to acoustic biomass estimates (0.034-8.35), annually-averaged biomass density of young-ofthe-year individuals derived by the two methods were similar for bay anchovy in Chesapeake Bay and Pacific anchovy in the Korea Strait (0.83 and 0.70 g m-3, respectively). Results suggested that, despite substantial uncertainty, anchovy biomass estimates are generally compatible between EPM and acoustics. However, reported estimates of biomass density derived from the two acoustic surveys in the Korea Strait differed by a factor of 28, suggesting that further improvements in calibrations are required to reliably estimate anchovy biomass. The comparisons suggested that all biomass estimates could be biased and will require comparison and validation by other, independent sampling methods.

  1. 114. JOB NO. 1347K, SHEET 1M, 1929, FORD MOTOR COMPANY; ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    114. JOB NO. 1347-K, SHEET 1M, 1929, FORD MOTOR COMPANY; BOILER HOUSE ASSEMBLY PLANT; PLAN - Ford Motor Company Long Beach Assembly Plant, Assembly Building, 700 Henry Ford Avenue, Long Beach, Los Angeles County, CA

  2. 5. JOB NO. 1347B, SHEET 1M, 1927, OIL HOUSE; FORD ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    5. JOB NO. 1347-B, SHEET 1M, 1927, OIL HOUSE; FORD MOTOR COMPANY; FOUNDATION, PLOT PLAN AND DETAILS - Ford Motor Company Long Beach Assembly Plant, Oil House, 700 Henry Ford Avenue, Long Beach, Los Angeles County, CA

  3. DETAIL VIEW OF THE TIRE INFLATION CAGE, ROOM 1M8, FACING ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    DETAIL VIEW OF THE TIRE INFLATION CAGE, ROOM 1M8, FACING NORTHEAST - Cape Canaveral Air Force Station, Launch Complex 39, Vehicle Assembly Building, VAB Road, East of Kennedy Parkway North, Cape Canaveral, Brevard County, FL

  4. Quark-antiquark potential to order 1/m and heavy quark masses

    SciTech Connect

    Laschka, Alexander; Kaiser, Norbert; Weise, Wolfram

    2011-05-01

    An updated heavy quark-antiquark potential is constructed by matching the short-distance perturbative part to long-distance lattice QCD results at an intermediate r scale. The static potential and the order 1/m potential are both analyzed in this way. Effects of order 1/m in charmonium and bottomonium spectra are discussed in comparison. Charm and bottom quark masses are deduced from the spectra and related to the quark masses of other schemes.

  5. Complete Genome Sequence of Methylobacterium populi P-1M, Isolated from Pink-Pigmented Household Biofilm

    PubMed Central

    Morohoshi, Tomohiro

    2016-01-01

    Methylobacterium populi P-1M is isolated from the pink-pigmented household biofilm. Here, we present the complete genome sequence of P-1M, consisting of one chromosome of 5,705,640 bp and five plasmids of 64,864 bp, 59,879 bp, 42,569 bp, 41,417 bp, and 29,506 bp. PMID:27313289

  6. Complete Genome Sequence of Methylobacterium populi P-1M, Isolated from Pink-Pigmented Household Biofilm.

    PubMed

    Morohoshi, Tomohiro; Ikeda, Tsukasa

    2016-01-01

    Methylobacterium populi P-1M is isolated from the pink-pigmented household biofilm. Here, we present the complete genome sequence of P-1M, consisting of one chromosome of 5,705,640 bp and five plasmids of 64,864 bp, 59,879 bp, 42,569 bp, 41,417 bp, and 29,506 bp. PMID:27313289

  7. Development of a new multiple sampling trawl with autonomous opening/closing net control system for sampling juvenile pelagic fish

    NASA Astrophysics Data System (ADS)

    Oozeki, Yoshioki; Hu, Fuxiang; Tomatsu, Chiaki; Kubota, Hiroshi

    2012-03-01

    A new multiple layer sampling trawl with an autonomous net opening/closing control system was developed to sample pelagic juvenile fish quantitatively. The new trawl system, based on the Matsuda-Oozeki-Hu Trawl (MOHT), has a rigid-frame 3.3 m high and 2.35 m wide and five nets of 11.0 m length with a rectangular mouth of 2.22 m×1.81 m (4 m2 mouth area; large-scale prototype). A cambered V-shape depressor is hung below the frame and two bridles are attached at the midpoint of the side frames. A net-release controller is used, which not only controls the net release mechanism but also records the net depth, temperature and flow rate during net towing. The controller sends stored command signals to the net release mechanism as depth settings and/or time settings and does not require any commands from the surface through a conducting cable or by acoustic signals. Two other models were constructed before the construction of the large-scale prototype, which are a small-scale prototype (2 m2 mouth area) for testing the net release mechanism and a 1/4-scale model of the large-scale prototype for flume tank tests. Flume tank tests with the 1/4-scale model showed that the frame leaned forward at a tilt angle from 5 to 15 degrees at towing speeds from 0.8 to 1.4 m s-1. Opened nets closed smoothly and sequentially nets were completely opened when the trigger was released by the command. Net depth rarely changed even during changes in towing speed. Sea trials both by the small-scale and the large-scale prototype demonstrated the same towing characteristics expected from the flume tank tests. The newly developed multiple layer opening/closing MOHT (MOC-MOHT) is considered to be suitable for quantitative layer sampling of juvenile fish.

  8. The occupation of trawl fishing and the medical aid available to the Grimsby deep sea fisherman1

    PubMed Central

    Moore, S. R. W.

    1969-01-01

    Moore, S. R. W. (1969).Brit. J. industr. Med.,26, 1-24. The occupation of trawl fishing and the medical aid available to the Grimsby deep sea fisherman. The mortality of fishermen is twice that of coalminers. Because of the method of fishing the mortality of the trawlerman is probably higher. Outside the industry little is known about the occupation of trawl fishing. Its size, the number of men employed, and the number and distribution of trawlers are therefore described, with particular reference to the port of Grimsby. As near, middle, and deep water trawlers sail from Grimsby, its industry gives a good representation of conditions in the industry as a whole. The port and the fishing grounds are described. The composition of the trawler crew, their conditions of work, accommodation, and remuneration are explained. A description is given of the trawl apparatus, fishing operations, and the hazards involved, and extracts from the writer's diary of a fishing voyage are appended. The United Kingdom has ratified the Accommodation of Crews (Fishermen) Convention 1966 of the International Labour Organisation, and an informal survey of a modern trawler fleet showed that it fell short of the requirements of this Convention. Accommodation is confined and the crew live and work in close proximity and in conditions of physical discomfort. Trawlermen work for long hours under conditions which would not be tolerated by the shore worker. The method of payment is such that trawlermen may take unnecessary risks. Earnings depend on team work so that illness and injury are often not reported with consequent deterioration of the condition. Physical fatigue and lack of sleep contribute to an increased accident rate. It is therefore recommended that more men per trawler should be employed to allow shorter working hours. As the skipper and mate are paid wholly on a share basis, the remainder of the crew receiving, in addition, a basic wage, it `pays' the trawlermen to take risks. A

  9. Induction of cysteine-rich motor neuron 1 mRNA expression in vascular endothelial cells.

    PubMed

    Nakashima, Yukiko; Takahashi, Satoru

    2014-08-22

    Cysteine-rich motor neuron 1 (CRIM1) is expressed in vascular endothelial cells and plays a crucial role in angiogenesis. In this study, we investigated the expression of CRIM1 mRNA in human umbilical vein endothelial cells (HUVECs). CRIM1 mRNA levels were not altered in vascular endothelial growth factor (VEGF)-stimulated monolayer HUVECs or in cells in collagen gels without VEGF. In contrast, the expression of CRIM1 mRNA was elevated in VEGF-stimulated cells in collagen gels. The increase in CRIM1 mRNA expression was observed even at 2h when HUVECs did not form tubular structures in collagen gels. Extracellular signal-regulated kinase (Erk) 1/2, Akt and focal adhesion kinase (FAK) were activated by VEGF in HUVECs. The VEGF-induced expression of CRIM1 mRNA was significantly abrogated by PD98059 or PF562271, but was not affected by LY294002. These results demonstrate that CRIM1 is an early response gene in the presence of both angiogenic stimulation (VEGF) and environmental (extracellular matrix) factors, and Erk and FAK might be involved in the upregulation of CRIM1 mRNA expression in vascular endothelial cells.

  10. Beam diagnostics

    SciTech Connect

    Bogaty, J.; Clifft, B.E.; Zinkann, G.P.; Pardo, R.C.

    1995-08-01

    The ECR-PII injector beam line is operated at a fixed ion velocity. The platform high voltage is chosen so that all ions have a velocity of 0.0085c at the PII entrance. If a previous tune configuration for the linac is to be used, the beam arrival time must be matched to the previous tune as well. A nondestructive beam-phase pickup detector was developed and installed at the entrance to the PII linac. This device provides continuous phase and beam current information and allows quick optimization of the beam injected into PII. Bunches traverse a short tubular electrode thereby inducing displacement currents. These currents are brought outside the vacuum interface where a lumped inductance resonates electrode capacitance at one of the bunching harmonic frequencies. This configuration yields a basic sensitivity of a few hundred millivolts signal per microampere of beam current. Beam-induced radiofrequency signals are summed against an offset frequency generated by our master oscillator. The resulting kilohertz difference frequency conveys beam intensity and bunch phase information which is sent to separate processing channels. One channel utilizes a phase locked loop which stabilizes phase readings if beam is unstable. The other channel uses a linear full wave active rectifier circuit which converts kilohertz sine wave signal amplitude to a D.C. voltage representing beam current. A prototype set of electronics is now in use with the detector and we began to use the system in operation to set the arrival beam phase. A permanent version of the electronics system for the phase detector is now under construction. Additional nondestructive beam intensity and phase monitors at the {open_quotes}Booster{close_quotes} and {open_quotes}ATLAS{close_quotes} linac sections are planned as well as on some of the high-energy beam lines. Such a monitor will be particularly useful for FMA experiments where the primary beam hits one of the electric deflector plates.

  11. Innovative real-time and non-destructive method of beam profile measurement under large beam current irradiation for BNCT

    NASA Astrophysics Data System (ADS)

    Takada, M.; Kamada, S.; Suda, M.; Fujii, R.; Nakamura, M.; Hoshi, M.; Sato, H.; Endo, S.; Hamano, T.; Arai, S.; Higashimata, A.

    2012-10-01

    We developed a real-time and non-destructive method of beam profile measurement on a target under large beam current irradiation, and without any complex radiation detectors or electrical circuits. We measured the beam profiles on a target by observing the target temperature using an infrared-radiation thermometer camera. The target temperatures were increased and decreased quickly by starting and stopping the beam irradiation within 1 s in response speed. Our method could trace beam movements rapidly. The beam size and position were calibrated by measuring O-ring heat on the target. Our method has the potential to measure beam profiles at beam current over 1 mA for proton and deuteron with the energy around 3 MeV and allows accelerator operators to adjust the beam location during beam irradiation experiments without decreasing the beam current.

  12. [Growth, mortality and exploitation rate of Priacanthus arenatus (Perciformes: Priacanthidae), in the trawl fisheries of northeast Venezuela].

    PubMed

    Toledo, J; Mendoza, J; Marcano, L

    2000-12-01

    We analyzed growth, mortality and exploitation rate of Priacanhus arenatus, captured by the shrimp trawling fishery (1989-1996), in northeastern Venezuela. The growth coefficient (K) and the asymptotic length (L8) were estimated by length-frequency data using the Battacharya method and other routines of the FISAT program. Total mortality (Z) and exploitation (E) rates were obtained by length-converted catch curve analysis, based on length-frequency data, and the Berverton and Holt's yield per recruit model, respectively. The mean growth parameters L and K were estimated as 474.7 mm and 0.69 year(-1), respectively. Mean total mortality was 4.03 and the exploitation rate range was 0.70-0.80. Results indicated that the population is overexploited. PMID:15272462

  13. Relationship between mid-water trawling effort and catch composition uncertainty in two large lakes (Huron and Michigan) dominated by alosines, osmerids, and coregonines

    USGS Publications Warehouse

    Warner, David M.; Claramunt, Randall M.; Schaeffer, Jeffrey S.; Yule, Daniel L.; Hrabik, Tom R.; Peintka, Bernie; Rudstam, Lars G.; Holuszko, Jeffrey D.; O'Brien, Timothy P.

    2012-01-01

    Because it is not possible to identify species with echosounders alone, trawling is widely used as a method for collecting species and size composition data for allocating acoustic fish density estimates to species or size groups. In the Laurentian Great Lakes, data from midwater trawls are commonly used for such allocations. However, there are no rules for how much midwater trawling effort is required to adequately describe species and size composition of the pelagic fish communities in these lakes, so the balance between acoustic sampling effort and trawling effort has been unguided. We used midwater trawl data collected between 1986 and 2008 in lakes Michigan and Huron and a variety of analytical techniques to develop guidance for appropriate levels of trawl effort. We used multivariate regression trees and re-sampling techniques to i. identify factors that influence species and size composition of the pelagic fish communities in these lakes, ii. identify stratification schemes for the two lakes, iii. determine if there was a relationship between uncertainty in catch composition and the number of tows made, and iv. predict the number of tows required to reach desired uncertainty targets. We found that depth occupied by fish below the surface was the most influential explanatory variable. Catch composition varied between lakes at depths <38.5 m below the surface, but not at depths ≥38.5 m below the surface. Year, latitude, and bottom depth influenced catch composition in the near-surface waters of Lake Michigan, while only year was important for Lake Huron surface waters. There was an inverse relationship between RSE [relative standard error = 100 × (SE/mean)] and the number of tows made for the proportions of the different size and species groups. We found for the fifth (Lake Huron) and sixth (Lake Michigan) largest lakes in the world, 15–35 tows were adequate to achieve target RSEs (15% and 30%) for ubiquitous species, but rarer species required much

  14. DHPG Activation of Group 1 mGluRs in BLA Enhances Fear Conditioning

    ERIC Educational Resources Information Center

    Rudy, Jerry W.; Matus-Amat, Patricia

    2009-01-01

    Group 1 metabotropic glutamate receptors are known to play an important role in both synaptic plasticity and memory. We show that activating these receptors prior to fear conditioning by infusing the group 1 mGluR agonist, (R.S.)-3,5-dihydroxyphenylglycine (DHPG), into the basolateral region of the amygdala (BLA) of adult Sprague-Dawley rats…

  15. Response of meiofaunal community with special reference to nematodes upon deployment of artificial reefs and cessation of bottom trawling in subtropical waters, Hong Kong.

    PubMed

    Liu, Xiao-Shou; Xu, Wen-Zhe; Cheung, S G; Shin, Paul K S

    2011-01-01

    The response of meiofaunal communities, especially nematodes, upon the deployment of artificial reefs and cessation of bottom trawling at a designated Marine Protected Area (MPA) in Hong Kong was studied through comparison of meiofaunal samples collected inside and outside the MPA. Total organic carbon (TOC), total Kjeldahl nitrogen (TKN), total phosphorus (TP), water content and silt-clay fraction in sediments were also analyzed. The level of TOC and TKN, and total meiofaunal and nematode abundance were significantly lower inside than that outside the MPA. Multivariate analysis also indicated differences in community structure. Biological traits analysis revealed that the proportions of nematodes with a clavate tail shape, longer adult length, stout body shape and k-strategy life history were higher inside than that outside the MPA. Such changes in nematode community structure could be a result of the presence of the artificial reefs and closure of the MPA from bottom trawling. PMID:21146838

  16. β-Adrenergic-stimulated macrophages: Comprehensive localization in the M1-M2 spectrum.

    PubMed

    Lamkin, Donald M; Ho, Hsin-Yun; Ong, Tiffany H; Kawanishi, Carly K; Stoffers, Victoria L; Ahlawat, Nivedita; Ma, Jeffrey C Y; Arevalo, Jesusa M G; Cole, Steve W; Sloan, Erica K

    2016-10-01

    β-Adrenergic signaling can regulate macrophage involvement in several diseases and often produces anti-inflammatory properties in macrophages, which are similar to M2 properties in a dichotomous M1 vs. M2 macrophage taxonomy. However, it is not clear that β-adrenergic-stimulated macrophages may be classified strictly as M2. In this in vitro study, we utilized recently published criteria and transcriptome-wide bioinformatics methods to map the relative polarity of murine β-adrenergic-stimulated macrophages within a wider M1-M2 spectrum. Results show that β-adrenergic-stimulated macrophages did not fit entirely into any one pre-defined category of the M1-M2 spectrum but did express genes that are representative of some M2 side categories. Moreover, transcript origin analysis of genome-wide transcriptional profiles located β-adrenergic-stimulated macrophages firmly on the M2 side of the M1-M2 spectrum and found active suppression of M1 side gene transcripts. The signal transduction pathways involved were mapped through blocking experiments and bioinformatics analysis of transcription factor binding motifs. M2-promoting effects were mediated specifically through β2-adrenergic receptors and were associated with CREB, C/EBPβ, and ATF transcription factor pathways but not with established M1-M2 STAT pathways. Thus, β-adrenergic-signaling induces a macrophage transcriptome that locates on the M2 side of the M1-M2 spectrum but likely accomplishes this effect through a signaling pathway that is atypical for M2-spectrum macrophages. PMID:27485040

  17. Autoregulation of Musashi1 mRNA translation during Xenopus oocyte maturation.

    PubMed

    Arumugam, Karthik; Macnicol, Melanie C; Macnicol, Angus M

    2012-08-01

    The mRNA translational control protein, Musashi, plays a critical role in cell fate determination through sequence-specific interactions with select target mRNAs. In proliferating stem cells, Musashi exerts repression of target mRNAs to promote cell cycle progression. During stem cell differentiation, Musashi target mRNAs are de-repressed and translated. Recently, we have reported an obligatory requirement for Musashi to direct translational activation of target mRNAs during Xenopus oocyte meiotic cell cycle progression. Despite the importance of Musashi in cell cycle regulation, only a few target mRNAs have been fully characterized. In this study, we report the identification and characterization of a new Musashi target mRNA in Xenopus oocytes. We demonstrate that progesterone-stimulated translational activation of the Xenopus Musashi1 mRNA is regulated through a functional Musashi binding element (MBE) in the Musashi1 mRNA 3' untranslated region (3' UTR). Mutational disruption of the MBE prevented translational activation of Musashi1 mRNA and its interaction with Musashi protein. Further, elimination of Musashi function through microinjection of inhibitory antisense oligonucleotides prevented progesterone-induced polyadenylation and translation of the endogenous Musashi1 mRNA. Thus, Xenopus Musashi proteins regulate translation of the Musashi1 mRNA during oocyte maturation. Our results indicate that the hierarchy of sequential and dependent mRNA translational control programs involved in directing progression through meiosis are reinforced by an intricate series of nested, positive feedback loops, including Musashi mRNA translational autoregulation. These autoregulatory positive feedback loops serve to amplify a weak initiating signal into a robust commitment for the oocyte to progress through the cell cycle and become competent for fertilization.

  18. Monoamine oxidase-A physically interacts with presenilin-1(M146V) in the mouse cortex.

    PubMed

    Wei, Zelan; Gabriel, Geraldine G; Rui, Lewei; Cao, Xia; Pennington, Paul R; Chlan-Fourney, Jennifer; Nazarali, Adil J; Baker, Glen B; Mousseau, Darrell D

    2012-01-01

    The concentration of presenilin-1 (PS-1) protein at the mitochondrial-associated aspect of the endoplasmic reticulum supports the potential for a mitochondrial influence of PS-1. Given that carriers of certain Alzheimer's disease (AD)-related PS-1 variants are predisposed to clinical depression and that depression has been historically associated with the mitochondrial enzyme, monoamine oxidase-A (MAO-A), we investigated cortical MAO-A function in the AD-related PS-1(M146V) knock-in mouse. The MAO-A system was clearly altered in the PS-1(M146V) mouse as revealed by (a) a mismatch between MAO-A protein expression and MAO-A activity; (b) changes in MAO-A-mediated monoaminergic neurotransmitter metabolism; (c) changes in non-cognitive behavior following treatment with the irreversible MAO-A inhibitor clorgyline; and (d) an increase in the potency of clorgyline in these same mice. We next investigated whether PS-1(M146V) could be influencing MAO-A directly. We observed (a) an enhanced MAO-A activity in necropsied PS-1(M146V) mouse cortical extracts incubated with DAPT (a PS-1 substrate-competitor); (b) the proximity of PS-1 with MAO-A and mitochondrial markers in cortical sections and in primary cortical neurons; (c) the co-segregation and co-immunoprecipitation of PS-1 and MAO-A within the mitochondrial fraction; and (d) the co-immunoprecipitation of overexpressed PS-1(M146V) and MAO-A proteins from N2a lysates. The PS-1(ΔEx9) and PS-1(D257A) variants, known to have low substrate-binding capacity, co-immunoprecipitated weakly with MAO-A. These combined data support a physical interaction between PS-1 and MAO-A that could influence MAO-A activity and contribute to the monoaminergic disruptions common to disorders as seemingly diverse as depression and AD.

  19. Collective and noncollective states in Cd116 studied via the β decays of Ag116m1,m2,gs

    NASA Astrophysics Data System (ADS)

    Batchelder, J. C.; Wood, J. L.; Garrett, P. E.; Green, K. L.; Rykaczewski, K. P.; Bilheux, J.-C.; Bingham, C. R.; Carter, H. K.; Fong, D.; Grzywacz, R.; Hamilton, J. H.; Hartley, D. J.; Hwang, J. K.; Krolas, W.; Kulp, W. D.; Larochelle, Y.; Piechaczek, A.; Ramayya, A. V.; Spejewski, E. H.; Stracener, D. W.; Tantawy, M. N.; Winger, J. A.; Zganjar, E. F.

    2009-11-01

    We have reinvestigated the β decay of the three isomers of Ag116 at the Holifield Radioactive Ion Beam Facility (HRIBF). Through the use of half-life information, we have been able to construct individual decay schemes for each isomer and correct what was a puzzling inconsistency with the published data, namely the β feeding of 2+ states by a 5+ isomer. Our results indicate that the feeding of these levels arises from a 3+ isomer in Ag116. A total of 271γ-ray transitions (159 new) were assigned to 148 levels (94 new) from the β decay of Ag116m1,m2,gs. Significant deviations are observed from IBM-2 calculations for the decay of the 0+ and 2+ members of the previously assigned three-phonon quintuplet. Candidate states for the quadrupole-octupole quintuplet states and πg9/2-πp1/2, πg9/2-πp3/2, νh11/2-νs1/2, νh11/2-νd3/2, and νh11/2-νd5/2 broken-pair states are assigned.

  20. 50 CFR Table 1 (north) to Part 660... - Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and...

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting North of 40°10â² N. Lat. 1 Table 1... Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting North of 40°10′ N....

  1. 50 CFR Table 1 (south) to Part 660... - Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and...

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting South of 40°10â² N. Lat. 1 Table 1... Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting South of 40°10′ N....

  2. Great lakes prey fish populations: a cross-basin overview of status and trends based on bottom trawl surveys, 1978-2012

    USGS Publications Warehouse

    Gorman, Owen T.

    2012-01-01

    The assessment of prey fish stocks in the Great Lakes have been conducted annually with bottom trawls since the 1970s by the Great Lakes Science Center, sometimes assisted by partner agencies. These stock assessments provide data on the status and trends of prey fish that are consumed by important commercial and recreational fishes. Although all these annual surveys are conducted using bottom trawls, they differ among the lakes in the proportion of the lake covered, seasonal timing, bottom trawl gear used, and the manner in which the trawl is towed (across or along bottom contours). Because each assessment is unique in one or more important aspects, direct comparison of prey fish catches among lakes is not straightforward. However, all of the assessments produce indices of abundance or biomass that can be standardized to facilitate comparisons of status and trends across all the Great Lakes. In this report, population indices were standardized to the highest value for a time series within each lake for the following principal prey species: cisco (Coregonus artedi), bloater (C. hoyi), rainbow smelt (Osmerus mordax), and alewife (Alosa pseudoharengus). Indices were also provided for round goby (Neogobius melanostomus), an invasive fish that has proliferated throughout the basin over the past 18 years. These standardized indices represent the best available long-term indices of relative abundance for these fishes across all of the Great Lakes. In this report, standardized indices are presented in graphical form along with synopses to provide a short, informal cross-basin summary of the status and trends of principal prey fishes. In keeping with this intent, tables, references, and a detailed discussion were omitted.

  3. Beam tuning

    SciTech Connect

    Pardo, R.C.; Zinkann, G.P.

    1995-08-01

    A program for configuring the linac, based on previously run configurations for any desired beam was used during the past year. This program uses only a small number of empirical tunes to scale resonator fields to properly accelerate a beam with a different charge-to-mass (q/A) ratio from the original tune configuration. The program worked very well for the PII linac section where we can easily match a new beam`s arrival phase and velocity to the tuned value. It was also fairly successful for the Booster and ATLAS sections of the linac, but not as successful as for the PII linac. Most of the problems are associated with setting the beam arrival time correctly for each major linac section. This problem is being addressed with the development of the capacitive pickup beam phase monitor discussed above. During the next year we expect to improve our ability to quickly configure the linac for new beams and reduce the time required for linac tuning. Already the time required for linac tuning as a percentage of research hours has decreased from 22% in FY 1993 to 15% in the first quarter of FY 1995.

  4. Low energy beam transport system developments

    NASA Astrophysics Data System (ADS)

    Dudnikov, V.; Han, B.; Stockli, M.; Welton, R.; Dudnikova, G.

    2015-04-01

    For high brightness beam production it is important to preserve the brightness in the low energy beam transport system (LEBT) used to transport and match the ion beams to the next stage of acceleration, usually an RFQ. While electrostatic focusing can be problematic for high current beam transport, reliable electrostatic LEBT operation has been demonstrated with H- beams up to 60 mA. Now, however, it is commonly accepted that an optimal LEBT for high current accelerator applications consists of focusing solenoids with space charge compensation. Two-solenoid LEBTs are successfully used for high current (>100 mA) proton beam transport. Preservation of low emittances (~0.15 π mm-mrad) requires the addition of a heavy gas (Xe, Kr), which causes ~5% of proton loss in a 1 m long LEBT. Similar Xe densities would be required to preserve low emittances of H- beams, but such gas densities cause unacceptably high H- beam losses. A short LEBT with only one short solenoid, movable for RFQ matching, can be used for reduced negative ion stripping. A strong electrostatic-focusing LEBT has been successfully adopted for transport of high current H- beams in the SNS Front End. Some modifications of such electrostatic LEBTs are expected to improve the reliable transport of intense positive and negative ion beams without greatly degrading their low emittances. We concentrate on processes that determine the beam brightness degradation and on their prevention. Proposed improvements to the SNS electrostatic LEBT are discussed.

  5. Toward a large lightweight mirror for AO: development of a 1m Ni coated CFRP mirror

    NASA Astrophysics Data System (ADS)

    Thompson, S. J.; Doel, A. P.; Brooks, D.; Strangwood, M.

    2008-07-01

    We present our recent developments towards the construction of a large, thin, single-piece mirror for adaptive optics (AO). Our current research program aims to have completed fabrication and testing of a 1m diameter, nickel coated carbon-fibre reinforced cyanate ester resin mirror by the last quarter of 2009. This composite mirror material is being developed to provide a lightweight and robust alternative to thin glass shell mirrors, with the challenge of future large deformable mirrors such as the 2.5m M4 on the E-ELT in mind. A detailed analysis of the material properties of test mirror samples is being performed at the University of Birmingham (UK), the first results of which are discussed and presented here. We discuss the project progress achieved so far, including fabrication of the 1m flat moulds for the replication process, manufacturing and testing methods for 20 cm diameter sample mirrors and system simulations.

  6. DigiCam: fully digital compact camera for SST-1M telescope

    NASA Astrophysics Data System (ADS)

    Aguilar, J. A.; Bilnik, W.; Bogacz, L.; Bulik, T.; Christov, A.; della Volpe, D.; Dyrda, M.; Frankowski, A.; Grudzinska, M.; Grygorczuk, J.; Heller, M.; Idźkowski, B.; Janiak, M.; Jamrozy, M.; Karczewski, M.; Kasperek, J.; Lyard, E.; Marszałek, A.; Michałowski, J.; Moderski, R.; Montaruli, T.; Neronov, A.; Nicolau-Kukliński, J.; Niemiec, J.; Ostrowski, M.; Paśko, P.; Płatos, Ł.; Prandini, E.; Pruchniewicz, R.; Rafalski, J.; Rajda, P. J.; Rameez, M.; Rataj, M.; Rupiński, M.; Rutkowski, K.; Seweryn, K.; Sidz, M.; Stawarz, Ł.; Stodulska, M.; Stodulski, M.; Tokarz, M.; Toscano, S.; Troyano Pujadas, I.; Walter, R.; Wawer, P.; Wawrzaszek, R.; Wiśniewski, L.; Zietara, K.; Ziółkowski, P.; Żychowski, P.

    2014-08-01

    The single mirror Small Size Telescopes (SST-1M), being built by a sub-consortium of Polish and Swiss Institutions of the CTA Consortium, will be equipped with a fully digital camera with a compact photodetector plane based on silicon photomultipliers. The internal trigger signal transmission overhead will be kept at low level by introducing a high level of integration. It will be achieved by massively deploying state-of-the-art multi-gigabit transceivers, beginning from the ADC flash converters, through the internal data and trigger signals transmission over backplanes and cables, to the camera's server 10Gb/s Ethernet links. Such approach will allow fitting the size and weight of the camera exactly to the SST-1M needs, still retaining the flexibility of a fully digital design. Such solution has low power consumption, high reliability and long lifetime. The concept of the camera will be described, along with some construction details and performance results.

  7. A purple-colored 1M mica clay from Silverton, Colorado

    USGS Publications Warehouse

    Tien, P.-L.

    1969-01-01

    A purple-colored clay of 1M mica polymorph in association with lead-zinc ore was collected from an abandoned mine dump near Silverton, Colorado. Electron micrographs show that the crystallites of the clay are less than 2?? in size and have poorly developed hexagonal outlines. Differential thermal and i.r. absorption analyses indicate similarity with those of muscovite. The structural formula of the 1M mica polymorph is (K1??45Na0??02) (Al3??75Mg0??19) (Si6??90Al1??10) O20(OH)4. The purple color may be related to trace amounts of manganese in the clay. ?? 1969.

  8. Beam-beam deflection and signature curves for elliptic beams

    SciTech Connect

    Ziemann, V.

    1990-10-22

    In this note we will present closed expressions for the beam-beam deflection angle for arbitrary elliptic beams including tilt. From these expressions signature curves, i.e., systematic deviations from the round beam deflection curve due to ellipticity or tilt are derived. In the course of the presentation we will prove that it is generally impossible to infer individual beam sizes from beam-beam deflection scans. 3 refs., 2 figs.

  9. AUF1 contributes to Cryptochrome1 mRNA degradation and rhythmic translation

    PubMed Central

    Lee, Kyung-Ha; Kim, Sung-Hoon; Kim, Hyo-Jin; Kim, Wanil; Lee, Hwa-Rim; Jung, Youngseob; Choi, Jung-Hyun; Hong, Ka Young; Jang, Sung Key; Kim, Kyong-Tai

    2014-01-01

    In the present study, we investigated the 3′ untranslated region (UTR) of the mouse core clock gene cryptochrome 1 (Cry1) at the post-transcriptional level, particularly its translational regulation. Interestingly, the 3′UTR of Cry1 mRNA decreased its mRNA levels but increased protein amounts. The 3′UTR is widely known to function as a cis-acting element of mRNA degradation. The 3′UTR also provides a binding site for microRNA and mainly suppresses translation of target mRNAs. We found that AU-rich element RNA binding protein 1 (AUF1) directly binds to the Cry1 3′UTR and regulates translation of Cry1 mRNA. AUF1 interacted with eukaryotic translation initiation factor 3 subunit B and also directly associated with ribosomal protein S3 or ribosomal protein S14, resulting in translation of Cry1 mRNA in a 3′UTR-dependent manner. Expression of cytoplasmic AUF1 and binding of AUF1 to the Cry1 3′UTR were parallel to the circadian CRY1 protein profile. Our results suggest that the 3′UTR of Cry1 is important for its rhythmic translation, and AUF1 bound to the 3′UTR facilitates interaction with the 5′ end of mRNA by interacting with translation initiation factors and recruiting the 40S ribosomal subunit to initiate translation of Cry1 mRNA. PMID:24423872

  10. Detection of MDR1 mRNA expression with optimized gold nanoparticle beacon

    NASA Astrophysics Data System (ADS)

    Zhou, Qiumei; Qian, Zhiyu; Gu, Yueqing

    2016-03-01

    MDR1 (multidrug resistance gene) mRNA expression is a promising biomarker for the prediction of doxorubicin resistance in clinic. However, the traditional technical process in clinic is complicated and cannot perform the real-time detection mRNA in living single cells. In this study, the expression of MDR1 mRNA was analyzed based on optimized gold nanoparticle beacon in tumor cells. Firstly, gold nanoparticle (AuNP) was modified by thiol-PEG, and the MDR1 beacon sequence was screened and optimized using a BLAST bioinformatics strategy. Then, optimized MDR1 molecular beacons were characterized by transmission electron microscope, UV-vis and fluorescence spectroscopies. The cytotoxicity of MDR1 molecular beacon on L-02, K562 and K562/Adr cells were investigated by MTT assay, suggesting that MDR1 molecular beacon was low inherent cytotoxicity. Dark field microscope was used to investigate the cellular uptake of hDAuNP beacon assisted with ultrasound. Finally, laser scanning confocal microscope images showed that there was a significant difference in MDR1 mRNA expression in K562 and K562/Adr cells, which was consistent with the results of q-PCR measurement. In summary, optimized MDR1 molecular beacon designed in this study is a reliable strategy for detection MDR1 mRNA expression in living tumor cells, and will be a promising strategy for in guiding patient treatment and management in individualized medication.

  11. Berberine as a natural source inhibitor for mild steel in 1 M H 2SO 4

    NASA Astrophysics Data System (ADS)

    Li, Yan; Zhao, Peng; Liang, Qiang; Hou, Baorong

    2005-12-01

    Berberine was abstracted from coptis chinensis and its inhibition efficiency on corrosion of mild steel in 1 M H 2SO 4 was investigated through weight loss experiment, electrochemical techniques and scanning electronic microscope (SEM) with energy disperse spectrometer (EDS). The weight loss results showed that berberine is an excellent corrosion inhibitor for mild steel immersed in 1 M H 2SO 4. Potentiodynamic curves suggested that berberine suppressed both cathodic and anodic processes for its concentrations higher than 1.0 × 10 -4 M and mainly cathodic reaction was suppressed for lower concentrations. The Nyquist diagrams of impedance for mild steel in 1 M H 2SO 4 containing berberine with different concentrations showed one capacitive loop, and the polarization resistance increased with the inhibitor concentration rising. A good fit to Flory-Huggins isotherm was obtained between surface coverage degree and inhibitor concentration. The surface morphology and EDS analysis for mild steel specimens in sulfuric acid in the absence and presence of the inhibitor also proved the results obtained by the weight loss and electrochemical experiments. The correlation of inhibition effect and molecular structure of berberine was then discussed by quantum chemistry study.

  12. Epibenthic assemblages of the Tail of the Grand Bank and Flemish Cap (northwest Atlantic) in relation to environmental parameters and trawling intensity

    NASA Astrophysics Data System (ADS)

    Murillo, Francisco Javier; Serrano, Alberto; Kenchington, Ellen; Mora, José

    2016-03-01

    The structure, composition and distribution of epibenthic invertebrate assemblages on the Tail of the Grand Bank of Newfoundland and Flemish Cap (northwest Atlantic) were sampled using depth-stratified trawls. Faunal analysis of 152 uniquely identified taxa produced hierarchical synoptic tables of species associations with diagnostic indicators based on species fidelity. Twelve spatially coherent epibenthic megafaunal assemblages were identified, each with relatively sharp faunal boundaries and unique species attributes. These assemblages were shown a posteriori through ANOSIM to have statistically different species compositions, and were nested within three major regional-scale faunal groups: (I) the continental shelf of the Tail of the Grand Bank, typified by the sea cucumber Cucumaria frondosa and the sand dollar Echinarachnius parma; (II) the upper slope of the Grand Bank and top of Flemish Cap, typified by the sponges Radiella hemisphaerica and Iophon piceum and the sea star Ceramaster granularis; and (III) the lower slope of the Grand Bank and Flemish Cap, typified by the sea urchin Phormosoma placenta, and the sea pens Anthoptilum grandiflorum and Funiculina quadrangularis. Comparisons with literature on benthic species associations from a half century ago suggest that the assemblages identified herein have persisted in the area at least for decades. Detrended correspondence analysis (DCA) identified a well-defined biological gradient along the first axis with very high species turn-over. Ten environmental variables (including Trawling Intensity) were significantly correlated with the ordinated data. At one extreme the continental shelf faunal group (I) was associated with shallow depth (mostly, less than 200 m), coarse sediments and cold and fresh water associated with the Labrador Current. At the other extreme the lower slope faunal group (III; stations below 500-600 m throughout the study area) was strongly associated with deep water, muddy sediments, and

  13. Monoamine oxidase-A physically interacts with presenilin-1(M146V) in the mouse cortex.

    PubMed

    Wei, Zelan; Gabriel, Geraldine G; Rui, Lewei; Cao, Xia; Pennington, Paul R; Chlan-Fourney, Jennifer; Nazarali, Adil J; Baker, Glen B; Mousseau, Darrell D

    2012-01-01

    The concentration of presenilin-1 (PS-1) protein at the mitochondrial-associated aspect of the endoplasmic reticulum supports the potential for a mitochondrial influence of PS-1. Given that carriers of certain Alzheimer's disease (AD)-related PS-1 variants are predisposed to clinical depression and that depression has been historically associated with the mitochondrial enzyme, monoamine oxidase-A (MAO-A), we investigated cortical MAO-A function in the AD-related PS-1(M146V) knock-in mouse. The MAO-A system was clearly altered in the PS-1(M146V) mouse as revealed by (a) a mismatch between MAO-A protein expression and MAO-A activity; (b) changes in MAO-A-mediated monoaminergic neurotransmitter metabolism; (c) changes in non-cognitive behavior following treatment with the irreversible MAO-A inhibitor clorgyline; and (d) an increase in the potency of clorgyline in these same mice. We next investigated whether PS-1(M146V) could be influencing MAO-A directly. We observed (a) an enhanced MAO-A activity in necropsied PS-1(M146V) mouse cortical extracts incubated with DAPT (a PS-1 substrate-competitor); (b) the proximity of PS-1 with MAO-A and mitochondrial markers in cortical sections and in primary cortical neurons; (c) the co-segregation and co-immunoprecipitation of PS-1 and MAO-A within the mitochondrial fraction; and (d) the co-immunoprecipitation of overexpressed PS-1(M146V) and MAO-A proteins from N2a lysates. The PS-1(ΔEx9) and PS-1(D257A) variants, known to have low substrate-binding capacity, co-immunoprecipitated weakly with MAO-A. These combined data support a physical interaction between PS-1 and MAO-A that could influence MAO-A activity and contribute to the monoaminergic disruptions common to disorders as seemingly diverse as depression and AD. PMID:22045496

  14. An integrative approach to detect subtle trophic niche differentiation in the sympatric trawling bat species Myotis dasycneme and Myotis daubentonii.

    PubMed

    Krüger, F; Clare, E L; Greif, S; Siemers, B M; Symondson, W O C; Sommer, R S

    2014-08-01

    Bats are well known for species richness and ecological diversity, and thus, they provide a good opportunity to study relationships and interaction between species. To assess interactions, we consider distinct traits that are probably to be triggered by niche shape and evolutionary processes. We present data on the trophic niche differentiation between two sympatric European trawling bat species, Myotis dasycneme and Myotis daubentonii, incorporating a wide spectrum of methodological approaches. We measure morphological traits involved in foraging and prey handling performance including bite force, weightlifting capacity and wing morphology. We then measure resulting prey consumption using both morphological and molecular diet analyses. These species closely resemble each other in morphological traits, however, subtle but significant differences were apparent in bite force and lift capacity, which are related to differences in basic body and head size. Both morphological and molecular diet analyses show strong niche overlap. We detected subtle differences in less frequent prey items, as well as differences in the exploitation of terrestrial and aquatic-based prey groups. Myotis dasycneme feeds more on aquatic prey, like Chironomidae and their pupal stages, or on the aquatic moth Acentria ephemerella. Myotis daubentonii feeds more on terrestrial prey, like Brachycera, or Coleoptera. This suggests that these bats use different microhabitats within the habitat where they co-occur. PMID:24164379

  15. LEDA and APT beam diagnostics instrumentation

    SciTech Connect

    Gilpatrick, J.D.; Johnson, K.F.; Hodapp, T.R.

    1997-10-01

    A 20-MeV 100-mA-cw proton-accelerator, Low Energy Demonstration Accelerator (LEDA), is presently being developed, fabricated, and tested at Los Alamos National Laboratory (LANL). The beam diagnostic instrumentation for LEDA and the final 1700-GeV Accelerator Production of Tritium (APT) are classified into two categories: operation and characterization instrumentation. The operational instrumentation does not intercept or minimally-intercepts the beam and are sufficiently prompt and robust to provide accurate information to the operators and commissioners during full-current cw beam operation. The characterization instrumentation, primarily utilized during commissioning project-phases, operates under more traditional 100-mA-peak and approximately 0.1-mA-average beam-current conditions. This paper will review some of the LEDA and APT operational beam diagnostic instrumentation.

  16. Beam loss

    NASA Astrophysics Data System (ADS)

    VanGinneken, A.; Edwards, D.; Harrison, M.

    1989-04-01

    This paper presents results from simulations of beam losses during the operation of a superconducting accelerator. The calculations use a combination of hadron/electromagnetic cascade plus elastic scattering codes with accelerator tracking routines. These calculations have been used in conjunction with the design of the Fermilab Tevatron. First accelerator geometry is described. The rest of the paper discusses a detailed attempt to simulate a fast extraction cycle, essentially in chronological order. Beginning with an unperturbed beam, the simulation generates proton phase-space distributions incident on the electrostatic septum. These interact either elastically or inelastically with the septum wires, and the products of these interactions are traced through the machine. Where these leave the accelerator, energy deposition levels in the magnets are calculated together with the projected response of the beam-loss monitors in this region. Finally, results of the calculation are compared with experimental data. (AIP)

  17. Detection of cyclin D1 mRNA by hybridization sensitive NIC-oligonucleotide probe.

    PubMed

    Kovaliov, Marina; Segal, Meirav; Kafri, Pinhas; Yavin, Eylon; Shav-Tal, Yaron; Fischer, Bilha

    2014-05-01

    A large group of fluorescent hybridization probes, includes intercalating dyes for example thiazole orange (TO). Usually TO is coupled to nucleic acids post-synthetically which severely limits its use. Here, we have developed a phosphoramidite monomer, 10, and prepared a 2'-OMe-RNA probe, labeled with 5-(trans-N-hexen-1-yl-)-TO-2'-deoxy-uridine nucleoside, dU(TO), (Nucleoside bearing an Inter-Calating moiety, NIC), for selective mRNA detection. We investigated a series of 15-mer 2'-OMe-RNA probes, targeting the cyclin D1 mRNA, containing one or several dU(TO) at various positions. dU(TO)-2'-OMe-RNA exhibited up to 7-fold enhancement of TO emission intensity upon hybridization with the complementary RNA versus that of the oligomer alone. This NIC-probe was applied for the specific detection of a very small amount of a breast cancer marker, cyclin D1 mRNA, in total RNA extract from cancerous cells (250 ng/μl). Furthermore, this NIC-probe was found to be superior to our related NIF (Nucleoside with Intrinsic Fluorescence)-probe which could detect cyclin D1 mRNA target only at high concentrations (1840 ng/μl). Additionally, dU(T) can be used as a monomer in solid-phase oligonucleotide synthesis, thus avoiding the need for post-synthetic modification of oligonucleotide probes. Hence, we propose dU(TO) oligonucleotides, as hybridization probes for the detection of specific RNA in homogeneous solutions and for the diagnosis of breast cancer.

  18. Northern Hemisphere storminess in the Norwegian Earth System Model (NorESM1-M)

    NASA Astrophysics Data System (ADS)

    Knudsen, Erlend M.; Walsh, John E.

    2016-07-01

    Metrics of storm activity in Northern Hemisphere high and midlatitudes are evaluated from historical output and future projections by the Norwegian Earth System Model (NorESM1-M) coupled global climate model. The European Re-Analysis Interim (ERA-Interim) and the Community Climate System Model (CCSM4), a global climate model of the same vintage as NorESM1-M, provide benchmarks for comparison. The focus is on the autumn and early winter (September through December) - the period when the ongoing and projected Arctic sea ice retreat is the greatest. Storm tracks derived from a vorticity-based algorithm for storm identification are reproduced well by NorESM1-M, although the tracks are somewhat better resolved in the higher-resolution ERA-Interim and CCSM4. The tracks show indications of shifting polewards in the future as climate changes under the Representative Concentration Pathway (RCP) forcing scenarios. Cyclones are projected to become generally more intense in the high latitudes, especially over the Alaskan region, although in some other areas the intensity is projected to decrease. While projected changes in track density are less coherent, there is a general tendency towards less frequent storms in midlatitudes and more frequent storms in high latitudes, especially the Baffin Bay/Davis Strait region in September. Autumn precipitation is projected to increase significantly across the entire high latitudes. Together with the projected loss of sea ice and increases in storm intensity and sea level, this increase in precipitation implies a greater vulnerability to coastal flooding and erosion, especially in the Alaskan region. The projected changes in storm intensity and precipitation (as well as sea ice and sea level pressure) scale generally linearly with the RCP value of the forcing and with time through the 21st century.

  19. Polars Observed with SDSS, CRTS, and McDonald Observatory 2.1-m

    NASA Astrophysics Data System (ADS)

    Santana, Joshua; Mason, Paul A.

    2016-01-01

    We present first results of a program to characterize magnetic CVs, mostly polars,using the Sloan Digital Sky Survey (SDSS) and the Catalina Real-Time Transient Survey (CRTS). We find that while it is difficult to predict what state a particular binary will be in, the duty cycle between optical high and low states of polars remains stable over multi-year time-scales. We suggest that polars lie along a sequence of long-term light curve behavior, from rarely high to rarely low. High speed photometry of polars from the 2.1-m telescope of McDonald Observatory is also presented.

  20. Performance and potential applications of replica technology up to the 1-m range

    NASA Astrophysics Data System (ADS)

    Assus, Pierre; Glentzlin, Andre; Schneider, Jean L.; Bresson, Yves; Dierickx, Philippe

    1994-06-01

    The principle of replication of optical surfaces developed at OCA is given and positive results obtained in the double replication of a 1-m diameter concave master onto a concave substrate by means of an intermediate convex replica is presented. The effect of thermal cycles and humidity is addressed as well. The technology has potential applications which are not limited to serial production of small optical components but may ease the production of large convex mirrors, processing of lightweight substrates and possible exotic materials. Possible use of this technique for the VLT secondaries and/or Coude train will conclude.

  1. CCD images of Mars with the 1 M reflector atop Pic-du-Midi

    NASA Astrophysics Data System (ADS)

    Lecacheux, J.; Drossart, P.; Buil, C.; Laques, P.; Thouvenot, E.; Guerin, P.

    1991-02-01

    CCD images of high spatial resolution, in red filters near 800 nm, have been taken from the 1 m reflector of Pic-du-Midi Observatory during the opposition of Mars, between August and October 1988. In several of the images a bright elongated feature is observed with a longitudinal extension of more than 100 deg. Comparison with Viking mosaics shows that small variations of albedo may be attributed to wind transportation of surface deposits by the strong winds of Mars. Small changes observed between the 2 months observation may be attributed to localized dust clouds on Mars.

  2. New corrosion inhibitor acrylamide methyl ether for mild steel in 1 M HCl

    NASA Astrophysics Data System (ADS)

    Ma, Xinyu; Jiang, Xiaohui; Xia, Shuwei; Shan, Mingli; Li, Xia; Yu, Liangmin; Tang, Qunwei

    2016-05-01

    Pursuit of good inhibition performance has been a persistent objective for advanced inhibitor industry. Here we demonstrate the experimental realization of a new corrosion inhibitor acrylamide methyl ether (AAME) from N-Methylol acrylamide (N-MAM) for mild steel in 1 M HCl. The resultant adsorption films have inhibition efficiency as high as 96.2%. Moreover, a theoretical investigation is also launched to demonstrate the potential mechanism behind the promising corrosion behaviors. This work represents a significant step forward, as it demonstrates how to make scalable AAME inhibitors as well as to enhance inhibition performances for high-efficiency and cost-effective corrosion inhibition platforms.

  3. Soil map of the Russian Arctic on a 1 : 1 M scale: Contents and compilation methods

    NASA Astrophysics Data System (ADS)

    Mikhailov, I. S.

    2016-04-01

    A new soil map of the Russian Arctic on a scale of 1 : 1 M shows the soil cover in the north of Eurasia and on the islands of the Arctic Ocean to the north of 68° N. This map has been developed in a geoinformation system in the vector format with the wide use of remote sensing data. The delineated soil polygons show dominant and accompanying soils and the structure of soil cover patterns with indication of soil associations and soil complexes, the character of parent materials, and the topographic conditions. The map of the soil-geographic zoning of the Russian Arctic developed on the basis of the soil map differs from its earlier analogues in a greater degree of detail. The soil map of the Russian Arctic on a scale of 1 : 1 M displays the most detailed information on the soil cover patterns and can be used for solving various problems related to the exploration and development of this territory. Soil names from the new classification system of Russian soils [10] have been introduced into the legend of the map. New soil information and the use of remote sensing data have made it possible to enlarge the number of soil polygons shown on the map and to correct their boundaries in comparison with previous soil maps of the Russian Arctic.

  4. Optimization design and simulation analysis for the key components of 1m aperture photoelectric theodolite

    NASA Astrophysics Data System (ADS)

    San, Xiao-gang; Qiao, Yan-feng; Yu, Shuaibei; Wang, Tao; Tang, Jie

    2014-09-01

    Taking a 1m aperture photoelectric theodolite as study object, its key components including four-way, turntable and base are structural optimized so as to improve structural rigidity while reducing structural mass. First, various components' working characteristics and relationships with the other parts are studied, based on these, reasonable finite element model of these components are established, then each component's optimal material topology are obtained by continuum topology optimization. According to structural topology, lightweight truss structure models are constructed and the models' key parameters are optimized in size. Finally, the structures optimized are verified by finite element analysis. Analysis prove that comparing to traditional structure, lightweight structures of theodolite's three key components can reduce mass up to 1095.2kg, and increase ratio of stiffness to mass. Meanwhile, for other indexes such as maximum stress, static deformation and first-order natural frequency, lightweight structures also have better performance than traditional structure. After alignment, angular shaking error of theodolite's horizontal axis is tested by autocollimator, the results are: maximum error is υ =1.82″, mean square error is σ =0.62″. Further, angular shaking error of theodolite's vertical axis is tested by 0.2″ gradienter, the results are: maximum error is υ =1.97″, mean square error is σ =0.706″. The results of all these analysis and tests fully prove that the optimized lightweight key components of this 1m aperture theodolite are reasonable and effective to satisfy this instrument's requirements.

  5. Prolonged Pseudohypoxia Targets Ambra1 mRNA to P-Bodies for Translational Repression

    PubMed Central

    Merlo, Paola; Rizza, Salvatore; D’Amico, Silvia; Cecconi, Francesco

    2015-01-01

    Hypoxia has been associated with several pathological conditions ranging from stroke to cancer. This condition results in the activation of autophagy, a cyto-protective response involving the formation of double-membraned structures, the autophagosomes, in the cytoplasm. In this study, we investigated the cellular mechanisms regulating the autophagy gene Ambra1, after exposure to a hypoxia mimetic, cobalt chloride (CoCl2). We observed that, upon CoCl2 administration, activation of the apoptotic machinery was concomitant with down-regulation of the pro-autophagic factor Ambra1, without affecting transcription. Additionally, co-treating the cells with the caspase inhibitor z-VAD-FMK did not restore Ambra1 protein levels, this implying the involvement of other regulatory mechanisms. Partial re-localization of Ambra1 mRNA to non-translating fractions and cytoplasmic P-bodies was further detected. Thus, in this pseudohypoxic context, Ambra1 mRNA translocation to P-bodies and translational suppression correlated with increased cell death. PMID:26086269

  6. Detection of WIPI1 mRNA as an indicator of autophagosome formation

    PubMed Central

    Tsuyuki, Satoshi; Takabayashi, Mei; Kawazu, Manami; Kudo, Kousei; Watanabe, Akari; Nagata, Yoshiki; Kusama, Yusuke; Yoshida, Kenichi

    2014-01-01

    Autophagy is a cellular bulk degradation system for long-lived proteins and organelles that operates during nutrient starvation and is thus a type of recycling system. In recent years, a series of mammalian orthologs of yeast autophagy-related (ATG) genes have been identified; however, the importance of the transcriptional regulation of ATG genes underlying autophagosome formation is poorly understood. In this study, we identified several ATG genes, including the genes ULK1, MAP1LC3B, GABARAPL1, ATG13, WIPI1, and WDR45/WIPI4, with elevated mRNA levels in thapsigargin-, C2-ceramide-, and rapamycin-treated as well as amino acid-depleted HeLa cells except for MAP1LC3B mRNA in rapamycin-treated HeLa cells. Rapamycin had a weaker effect on the expressions of ATG genes. The increase in WIPI1 and MAP1LC3B mRNA was induced prior to the accumulation of the autophagy marker protein MAP1LC3 in the thapsigargin- and C2-ceramide-treated A549 cells. By counting the puncta marked with MAP1LC3B in HeLa cells treated with different autophagy inducers, we revealed that the time-dependent mRNA elevation of a specific set of ATG genes was similar to that of autophagosome accumulation. The transcriptional attenuation of WIPI1 mRNA using RNA interference inhibited the puncta number in thapsigargin-treated HeLa cells. Remarkably, increases in the abundance of WIPI1 mRNA were also manifested in thapsigargin- and C2-ceramide-treated human fibroblasts (WI-38 and TIG-1), human cancer cells (U-2 OS, Saos-2, and MCF7), and rodent fibroblasts (Rat-1). Taken together, these results suggest that the detection of WIPI1 mRNA is likely to be a convenient method of monitoring autophagosome formation in a wide range of cell types. PMID:24384561

  7. Oestradiol reduces Liver Receptor Homolog-1 mRNA transcript stability in breast cancer cell lines

    SciTech Connect

    Lazarus, Kyren A.; Zhao, Zhe; Knower, Kevin C.; To, Sarah Q.; Chand, Ashwini L.; Clyne, Colin D.

    2013-08-30

    Highlights: •LRH-1 is an orphan nuclear receptor that regulates tumor proliferation. •In breast cancer, high mRNA expression is associated with ER+ status. •In ER−ve cells, despite very low mRNA, we found abundant LRH-1 protein. •Our data show distinctly different LRH-1 protein isoforms in ER− and ER+ breast cancer cells. •This is due to differences in LRH-1 mRNA and protein stability rates. -- Abstract: The expression of orphan nuclear receptor Liver Receptor Homolog-1 (LRH-1) is elevated in breast cancer and promotes proliferation, migration and invasion in vitro. LRH-1 expression is regulated by oestrogen (E{sub 2}), with LRH-1 mRNA transcript levels higher in oestrogen receptor α (ERα) positive (ER+) breast cancer cells compared to ER− cells. However, the presence of LRH-1 protein in ER− cells suggests discordance between mRNA transcript levels and protein expression. To understand this, we investigated the impact of mRNA and protein stability in determining LRH-1 protein levels in breast cancer cells. LRH-1 transcript levels were significantly higher in ER+ versus ER− breast cancer cells lines; however LRH-1 protein was expressed at similar levels. We found LRH-1 mRNA and protein was more stable in ER− compared to ER+ cell lines. The tumor-specific LRH-1 variant isoform, LRH-1v4, which is highly responsive to E{sub 2}, showed increased mRNA stability in ER− versus ER+ cells. In addition, in MCF-7 and T47-D cell lines, LRH-1 total mRNA stability was reduced with E{sub 2} treatment, this effect mediated by ERα. Our data demonstrates that in ER− cells, increased mRNA and protein stability contribute to the abundant protein expression levels. Expression and immunolocalisation of LRH-1 in ER− cells as well as ER− tumors suggests a possible role in the development of ER− tumors. The modulation of LRH-1 bioactivity may therefore be beneficial as a treatment option in both ER− and ER+ breast cancer.

  8. Defining trade-offs among conservation, profitability, and food security in the California current bottom-trawl fishery.

    PubMed

    Hilborn, Ray; Stewart, Ian J; Branch, Trevor A; Jensen, Olaf P

    2012-04-01

    Although it is recognized that marine wild-capture fisheries are an important source of food for much of the world, the cost of sustainable capture fisheries to species diversity is uncertain, and it is often questioned whether industrial fisheries can be managed sustainably. We evaluated the trade-off among sustainable food production, profitability, and conservation objectives in the groundfish bottom-trawl fishery off the U.S. West Coast, where depletion (i.e., reduction in abundance) of six rockfish species (Sebastes) is of particular concern. Trade-offs are inherent in this multispecies fishery because there is limited capacity to target species individually. From population models and catch of 34 stocks of bottom fish, we calculated the relation between harvest rate, long-term yield (i.e., total weight of fish caught), profit, and depletion of each species. In our models, annual ecosystem-wide yield from all 34 stocks was maximized with an overall 5.4% harvest rate, but profit was maximized at a 2.8% harvest rate. When we reduced harvest rates to the level (2.2% harvest rate) at which no stocks collapsed (<10% of unfished levels), biomass harvested was 76% of the maximum sustainable yield and profit 89% of maximum. A harvest rate under which no stocks fell below the biomass that produced maximum sustainable yield (1% harvest rate), resulted in 45% of potential yield and 67% of potential profit. Major reductions in catch in the late 1990s led to increase in the biomass of the most depleted stocks, but this rebuilding resulted in the loss of >30% of total sustainable yield, whereas yield lost from stock depletion was 3% of total sustainable yield. There are clear conservation benefits to lower harvest rates, but avoiding overfishing of all stocks in a multispecies fishery carries a substantial cost in terms of lost yield and profit.

  9. The seascape of demersal fish nursery areas in the North Mediterranean Sea, a first step towards the implementation of spatial planning for trawl fisheries.

    PubMed

    Colloca, Francesco; Garofalo, Germana; Bitetto, Isabella; Facchini, Maria Teresa; Grati, Fabio; Martiradonna, Angela; Mastrantonio, Gianluca; Nikolioudakis, Nikolaos; Ordinas, Francesc; Scarcella, Giuseppe; Tserpes, George; Tugores, M Pilar; Valavanis, Vasilis; Carlucci, Roberto; Fiorentino, Fabio; Follesa, Maria C; Iglesias, Magdalena; Knittweis, Leyla; Lefkaditou, Eugenia; Lembo, Giuseppe; Manfredi, Chiara; Massutí, Enric; Pace, Marie Louise; Papadopoulou, Nadia; Sartor, Paolo; Smith, Christopher J; Spedicato, Maria Teresa

    2015-01-01

    The identification of nursery grounds and other essential fish habitats of exploited stocks is a key requirement for the development of spatial conservation planning aimed at reducing the adverse impact of fishing on the exploited populations and ecosystems. The reduction in juvenile mortality is particularly relevant in the Mediterranean and is considered as one of the main prerequisites for the future sustainability of trawl fisheries. The distribution of nursery areas of 11 important commercial species of demersal fish and shellfish was analysed in the European Union Mediterranean waters using time series of bottom trawl survey data with the aim of identifying the most persistent recruitment areas. A high interspecific spatial overlap between nursery areas was mainly found along the shelf break of many different sectors of the Northern Mediterranean indicating a high potential for the implementation of conservation measures. Overlap of the nursery grounds with existing spatial fisheries management measures and trawl fisheries restricted areas was also investigated. Spatial analyses revealed considerable variation depending on species and associated habitat/depth preferences with increased protection seen in coastal nurseries and minimal protection seen for deeper nurseries (e.g. Parapenaeus longirostris 6%). This is partly attributed to existing environmental policy instruments (e.g. Habitats Directive and Mediterranean Regulation EC 1967/2006) aiming at minimising impacts on coastal priority habitats such as seagrass, coralligenous and maerl beds. The new knowledge on the distribution and persistence of demersal nurseries provided in this study can support the application of spatial conservation measures, such as the designation of no-take Marine Protected Areas in EU Mediterranean waters and their inclusion in a conservation network. The establishment of no-take zones will be consistent with the objectives of the Common Fisheries Policy applying the ecosystem

  10. Spatial overlap of Black-browed albatrosses with longline and trawl fisheries in the Patagonian Shelf during the non-breeding season

    NASA Astrophysics Data System (ADS)

    Copello, Sofía; Seco Pon, Juan Pablo; Favero, Marco

    2014-05-01

    Incidental mortality in fisheries is the main at-sea threat albatrosses are facing nowadays. In this study we used remote sensing techniques to model the degree of spatial overlapping between the Black-browed albatross (Thalassarche melanophris) and Argentine fisheries, assuming this as a proxy of risk for albatrosses. Eleven tags were deployed on albatrosses during the non-breeding seasons 2011 and 2012 in the Patagonian Shelf. Their distribution overlapped to different extents with the two coastal trawl, three offshore trawl and one demersal longline fisheries. The overlap index showed highest values with both coastal fleets, followed by the ice-chilling trawl fleet. These intersections were located in the Argentinean-Uruguayan Common Fishing Zone, in coastal areas of the SE of Buenos Aires province, El Rincón estuary and over the shelf break. The analysis of intersections of focal areas from albatrosses and all fisheries allowed the identification of thirty-four fishing management units (1° by 1° grid within the Argentine EEZ) classified as of medium, high or very high conservation priority. Very high priority units were placed between 35 and 38°S in the external mouth of Rio de la Plata, and between 45 and 47°S in neighboring waters East to the hake fishing closure. Although there were possible biases due to the limited number of tracked birds and the locations where albatrosses were captured and instrumented, the information presented in this study provides a comprehensive picture of important areas of overlapping during winter that could be used by the fishery administration to prioritize conservation actions under limited resource scenarios.

  11. The Seascape of Demersal Fish Nursery Areas in the North Mediterranean Sea, a First Step Towards the Implementation of Spatial Planning for Trawl Fisheries

    PubMed Central

    Colloca, Francesco; Garofalo, Germana; Bitetto, Isabella; Facchini, Maria Teresa; Grati, Fabio; Martiradonna, Angela; Mastrantonio, Gianluca; Nikolioudakis, Nikolaos; Ordinas, Francesc; Scarcella, Giuseppe; Tserpes, George; Tugores, M. Pilar; Valavanis, Vasilis; Carlucci, Roberto; Fiorentino, Fabio; Follesa, Maria C.; Iglesias, Magdalena; Knittweis, Leyla; Lefkaditou, Eugenia; Lembo, Giuseppe; Manfredi, Chiara; Massutí, Enric; Pace, Marie Louise; Papadopoulou, Nadia; Sartor, Paolo; Smith, Christopher J.; Spedicato, Maria Teresa

    2015-01-01

    The identification of nursery grounds and other essential fish habitats of exploited stocks is a key requirement for the development of spatial conservation planning aimed at reducing the adverse impact of fishing on the exploited populations and ecosystems. The reduction in juvenile mortality is particularly relevant in the Mediterranean and is considered as one of the main prerequisites for the future sustainability of trawl fisheries. The distribution of nursery areas of 11 important commercial species of demersal fish and shellfish was analysed in the European Union Mediterranean waters using time series of bottom trawl survey data with the aim of identifying the most persistent recruitment areas. A high interspecific spatial overlap between nursery areas was mainly found along the shelf break of many different sectors of the Northern Mediterranean indicating a high potential for the implementation of conservation measures. Overlap of the nursery grounds with existing spatial fisheries management measures and trawl fisheries restricted areas was also investigated. Spatial analyses revealed considerable variation depending on species and associated habitat/depth preferences with increased protection seen in coastal nurseries and minimal protection seen for deeper nurseries (e.g. Parapenaeus longirostris 6%). This is partly attributed to existing environmental policy instruments (e.g. Habitats Directive and Mediterranean Regulation EC 1967/2006) aiming at minimising impacts on coastal priority habitats such as seagrass, coralligenous and maerl beds. The new knowledge on the distribution and persistence of demersal nurseries provided in this study can support the application of spatial conservation measures, such as the designation of no-take Marine Protected Areas in EU Mediterranean waters and their inclusion in a conservation network. The establishment of no-take zones will be consistent with the objectives of the Common Fisheries Policy applying the ecosystem

  12. The seascape of demersal fish nursery areas in the North Mediterranean Sea, a first step towards the implementation of spatial planning for trawl fisheries.

    PubMed

    Colloca, Francesco; Garofalo, Germana; Bitetto, Isabella; Facchini, Maria Teresa; Grati, Fabio; Martiradonna, Angela; Mastrantonio, Gianluca; Nikolioudakis, Nikolaos; Ordinas, Francesc; Scarcella, Giuseppe; Tserpes, George; Tugores, M Pilar; Valavanis, Vasilis; Carlucci, Roberto; Fiorentino, Fabio; Follesa, Maria C; Iglesias, Magdalena; Knittweis, Leyla; Lefkaditou, Eugenia; Lembo, Giuseppe; Manfredi, Chiara; Massutí, Enric; Pace, Marie Louise; Papadopoulou, Nadia; Sartor, Paolo; Smith, Christopher J; Spedicato, Maria Teresa

    2015-01-01

    The identification of nursery grounds and other essential fish habitats of exploited stocks is a key requirement for the development of spatial conservation planning aimed at reducing the adverse impact of fishing on the exploited populations and ecosystems. The reduction in juvenile mortality is particularly relevant in the Mediterranean and is considered as one of the main prerequisites for the future sustainability of trawl fisheries. The distribution of nursery areas of 11 important commercial species of demersal fish and shellfish was analysed in the European Union Mediterranean waters using time series of bottom trawl survey data with the aim of identifying the most persistent recruitment areas. A high interspecific spatial overlap between nursery areas was mainly found along the shelf break of many different sectors of the Northern Mediterranean indicating a high potential for the implementation of conservation measures. Overlap of the nursery grounds with existing spatial fisheries management measures and trawl fisheries restricted areas was also investigated. Spatial analyses revealed considerable variation depending on species and associated habitat/depth preferences with increased protection seen in coastal nurseries and minimal protection seen for deeper nurseries (e.g. Parapenaeus longirostris 6%). This is partly attributed to existing environmental policy instruments (e.g. Habitats Directive and Mediterranean Regulation EC 1967/2006) aiming at minimising impacts on coastal priority habitats such as seagrass, coralligenous and maerl beds. The new knowledge on the distribution and persistence of demersal nurseries provided in this study can support the application of spatial conservation measures, such as the designation of no-take Marine Protected Areas in EU Mediterranean waters and their inclusion in a conservation network. The establishment of no-take zones will be consistent with the objectives of the Common Fisheries Policy applying the ecosystem

  13. IR CMOS: the digital nightvision solution to sub-1 mLux imaging

    NASA Astrophysics Data System (ADS)

    Pralle, M. U.; Carey, J. E.; Vineis, C.; Palsule, C.; Jiang, J.; Joy, T.

    2015-05-01

    SiOnyx has demonstrated imaging at light levels below 1 mLux at 60 FPS with a 720P CMOS image sensor in a compact, low latency camera. The camera contains a 1 inch (16 mm) optical format sensor and streams uncompressed video over CameraLink with row wise image latency below 1 msec. Sub mLux imaging is enabled by the combination of enhanced quantum efficiency in the near infrared together with state of the art low noise image sensor design. The quantum efficiency enhancement is achieved by utilizing SiOnyx's proprietary ultrafast laser semiconductor processing technology that enhances the absorption of light within a thin pixel layer. Our technology demonstrates a 10 fold improvement in infrared sensitivity over incumbent imaging technology while maintaining complete compatibility with standard CMOS image sensor process flows. Applications include surveillance, nightvision, and 1064nm laser see-spot.

  14. Analysis and Verification of HET 1 m Mirror Deflections Due to Edge Sensor Loading

    NASA Technical Reports Server (NTRS)

    Stallcup, Michael A.; Whitaker, Ann F. (Technical Monitor)

    2001-01-01

    The ninety-one 1 m mirror segments which comprise the McDonald Observatory Hobby Eberly Telescope (HET) primary mirror have been observed to drift out of alignment in an unpredictable manner in response to time variant temperature deviations. A Segment Alignment Maintenance System (SAMS) is being developed to detect and correct this segment-to-segment drift using sensors mounted at the edges of the mirror segments. However, the segments were not originally designed to carry the weight of edge sensors. Thus, analyses and tests were conducted as part of the SAMS design to estimate the magnitude and shape of the edge sensor induced deformations as well as the resultant optical performance. Interferometric testing of a 26 m radius of curvature HET mirror segment was performed at the Marshall Space Flight Center using several load conditions to verify the finite element analyses.

  15. The auditory N1m reveals the left-hemispheric representation of vowel identity in humans.

    PubMed

    Mäkelä, Anna Mari; Alku, Paavo; Tiitinen, Hannu

    2003-12-19

    The cortical correlates of the perception of the sustained vowels /a/, /o/ and /u/ were studied by using whole-head magnetoencephalography (MEG). The three vowels which were located on a line in the space spanned by the first (F1) and second (F2) formants and having equal F2-F1 differences evoked equally strong auditory N1m responses at 120 ms after stimulus onset. The left-hemispheric distribution of the source locations, estimated by equivalent current dipoles, reflected the acoustic similarity of the vowels: the growing distance of the vowels in the F2,F1-space was accompanied by a growing distance between the centres of gravity of activation elicited by each vowel. Thus, direct evidence for the orderly left-hemispheric representation of phonemes in human auditory cortex was found.

  16. The luminosity function of cluster galaxies: relations among M_1_, M^*^ and the morphological type.

    NASA Astrophysics Data System (ADS)

    Trevese, D.; Cirimele, G.; Appodia, B.

    1996-11-01

    A study of the luminosity function of 36 Abell clusters of galaxies has been carried out using photographic plates obtained with the Palomar 1.2 m Schmidt telescope. The relation between the magnitude M_1_ of the brightest cluster member and the Schechter function parameter M^*^ has been analyzed. A positive correlation between M^*^ and M_1_ is found. However clusters appear segregated in the M_1_-M^*^ plane according to their Rood & Sastry class in such a way that on average M_1_ becomes brighter while M^*^ becomes fainter going from late to early Rood & Sastry and also Bautz & Morgan classes. Also a partial correlation analysis involving the magnitude M_10_ of the 10th brightest galaxy, shows a negative intrinsic correlation between M_1_ and M^*^. These results agree with the cannibalism model for the formation of brightest cluster members, and provide new constraints for theories of cluster formation and evolution.

  17. The 0.1m subsonic cryogenic tunnel at the University of Southampton

    NASA Technical Reports Server (NTRS)

    Goodyer, M. J.

    1978-01-01

    The design and performance of a low speed one atmosphere cryogenic wind tunnel is described. The tunnel is fan driven and operates over the temperature range 305K to 77K at Mach numbers up to 0.28. It is cooled by the injection and evaporation of liquid nitrogen in the circuit, and the usual test gas is nitrogen. The tunnel has a square test section 0.1m across and was built to allow, at low costs, the development of testing techniques and the development of instrumentation for use in cryogenic tunnels, and to exploit in general instrumentation work the unusuallly wide range of unit Reynolds number available in such tunnels. The tunnel was first used in the development of surface flow visualization techniques for use at cryogenic temperatures.

  18. Measurement of minimum ignition energies of dust clouds in the <1mJ region.

    PubMed

    Randeberg, Erlend; Eckhoff, Rolf K

    2007-02-01

    The lower energy limit of current standard test apparatus for determining the minimum ignition energy (MIE) of dust clouds is in the range of 1-3mJ. This is a quite severe limitation because many dusts ignite readily at this energy level. A new spark generator, capable of producing synchronised sparks of very low energies and with an integrated system for measurement of spark energy, has therefore been developed and employed to a number of easily ignitable dusts. Before testing the MIE of dust clouds, it was considered essential to calibrate the new spark generator against a gas of known MIE. For this purpose, a mixture of propane and air was selected. However, a comprehensive literature review revealed that the reported MIEs of this gas mixture vary significantly, depending on the spark discharge characteristics, including discharge duration. When taking these factors into account, it was concluded that the new spark generator yielded reasonable results for propane/air. Applying the new spark generator to explosive dust clouds showed that a number of dusts do in fact have MIEs that are one to two orders of magnitude lower than 1mJ. The new spark generator may therefore offer a basis for developing a standard test apparatus in the low-energy region. When using a method of triggering the spark by the explosive dust cloud itself, which probably is a more industrially relevant process than synchronisation between the dust dispersion and sparkover, somewhat higher MIEs were found compared to those determined when using synchronised sparks. However, even with this method of spark triggering, MIEs below 1mJ were found.

  19. Enhanced M1/M2 macrophage ratio promotes orthodontic root resorption.

    PubMed

    He, D; Kou, X; Luo, Q; Yang, R; Liu, D; Wang, X; Song, Y; Cao, H; Zeng, M; Gan, Y; Zhou, Y

    2015-01-01

    Mechanical force-induced orthodontic root resorption is a major clinical challenge in orthodontic treatment. Macrophages play an important role in orthodontic root resorption, but the underlying mechanism remains unclear. In this study, we examined the mechanism by which the ratio of M1 to M2 macrophage polarization affects root resorption during orthodontic tooth movement. Root resorption occurred when nickel-titanium coil springs were applied on the upper first molars of rats for 3 to 14 d. Positively stained odontoclasts or osteoclasts with tartrate-resistant acid phosphatase were found in resorption areas. Meanwhile, M1-like macrophages positive for CD68 and inducible nitric oxide synthase (iNOS) persistently accumulated on the compression side of periodontal tissues. In addition, the expressions of the M1 activator interferon-γ and the M1-associated pro-inflammatory cytokine tumor necrosis factor (TNF)-α were upregulated on the compression side of periodontal tissues. When the coil springs were removed at the 14th day after orthodontic force application, root resorption was partially rescued. The number of CD68(+)CD163(+) M2-like macrophages gradually increased on the compression side of periodontal tissues. The levels of M2 activator interleukin (IL)-4 and the M2-associated anti-inflammatory cytokine IL-10 also increased. Systemic injection of the TNF-α inhibitor etanercept or IL-4 attenuated the severity of root resorption and decreased the ratio of M1 to M2 macrophages. These data imply that the balance between M1 and M2 macrophages affects orthodontic root resorption. Root resorption was aggravated by an enhanced M1/M2 ratio but was partially rescued by a reduced M1/M2 ratio.

  20. Structural and Functional Significance of the FGL Sequence of the Periplasmic Chaperone Caf1M of Yersinia pestis

    PubMed Central

    Chapman, David A. G.; Zavialov, Anton V.; Chernovskaya, Tatiana V.; Karlyshev, Andrey V.; Zav’yalova, Galina A.; Vasiliev, Anatoly M.; Dudich, Igor V.; Abramov, Vyacheslav M.; Zav’yalov, Vladimir P.; MacIntyre, Sheila

    1999-01-01

    The periplasmic molecular chaperone Caf1M of Yersinia pestis is a typical representative of a subfamily of specific chaperones involved in assembly of surface adhesins with a very simple structure. One characteristic feature of this Caf1M-like subfamily is possession of an extended, variable sequence (termed FGL) between the F1 and subunit binding G1 β-strands. In contrast, FGS subfamily members, characterized by PapD, have a short F1-G1 loop and are involved in assembly of complex pili. To elucidate the structural and functional significance of the FGL sequence, a mutant Caf1M molecule (dCaf1M), in which the 27 amino acid residues between the F1 and G1 β-strands had been deleted, was constructed. Expression of the mutated caf1M in Escherichia coli resulted in accumulation of high levels of dCaf1M. The far-UV circular dichroism spectra of the mutant and wild-type proteins were indistinguishable and exhibited practically the same temperature and pH dependencies. Thus, the FGL sequence of Caf1M clearly does not contribute significantly to the stability of the protein conformation. Preferential cleavage of Caf1M by trypsin at Lys-119 confirmed surface exposure of this part of the FGL sequence in the isolated chaperone and periplasmic chaperone-subunit complex. There was no evidence of surface-localized Caf1 subunit in the presence of the Caf1A outer membrane protein and dCaf1M. In contrast to Caf1M, dCaf1M was not able to form a stable complex with Caf1 nor could it protect the subunit from proteolytic degradation in vivo. This demonstration that the FGL sequence is required for stable chaperone-subunit interaction, but not for folding of a stable chaperone, provides a sound basis for future detailed molecular analyses of the FGL subfamily of chaperones. PMID:10198004

  1. External Beam Therapy (EBT)

    MedlinePlus

    ... Physician Resources Professions Site Index A-Z External Beam Therapy (EBT) External beam therapy (EBT) is a ... follow-up should I expect? What is external beam therapy and how is it used? External beam ...

  2. ATP hydrolysis is essential for Bag-1M-mediated inhibition of the DNA binding by the glucocorticoid receptor

    SciTech Connect

    Hong, Wei; Chen, Linfeng; Liu, Yunde; Gao, Weizhen

    2009-12-04

    The 70-kDa heat shock protein (Hsp70) is involved in providing the appropriate conformation of various nuclear hormone receptors, including the glucocorticoid receptor (GR). The Bcl-2 associated athanogene 1M (Bag-1M) is known to downregulate the DNA binding by the GR. Also, Bag-1M interacts with the ATPase domain of Hsp70 to modulate the release of the substrate from Hsp70. In this study, we demonstrate that ATP hydrolysis enhances Bag-1M-mediated inhibition of the DNA binding by the GR. However, the inhibitory effect of Bag-1M was abolished when the intracellular ATP was depleted. In addition, a Bag-1M mutant lacking the interaction with Hsp70 did not influence the GR to bind DNA, suggesting the interaction of Bag-1M with Hsp70 in needed for its negative effect. These results indicate that ATP hydrolysis is essential for Bag-1M-mediated inhibition of the DNA binding by the GR and Hsp70 is a mediator for this process.

  3. CEBAF beam loss accounting

    SciTech Connect

    Ursic, R.; Mahoney, K.; Hovater, C.; Hutton, A.; Sinclair, C.

    1995-12-31

    This paper describes the design and implementation of a beam loss accounting system for the CEBAF electron accelerator. This system samples the beam curent throughout the beam path and measures the beam current accurately. Personnel Safety and Machine Protection systems use this system to turn off the beam when hazardous beam losses occur.

  4. The STOR-1M Tokamak: Experiments on Current Reversal and Fast Current Ramping.

    NASA Astrophysics Data System (ADS)

    Wolfe, Sean William

    1987-09-01

    Experiments on the STOR-1M tokamak have addressed the following problems in magnetic confinement fusion research: (1) the attainment of quasi-continuous operation in a fusion reactor by inductively driving a current which alternates polarity; (2) plasma heating by inducing turbulence to enhance the Ohmic dissipation; and, (3) the stability of tokamak plasmas carrying large currents. STOR-1M plasmas have major and minor radii of 22 cm and 3.5 cm, respectively, and are produced with hydrogen at a pressure of 0.9 mTorr. Typical discharges carry a current of 5 kA with a toroidal field of 1 T. Around the current peak, electrons at a density of 1 x 10('13) cm(' -3) are heated to a temperature of 80 eV. The ions, with an effective charge number of 2, reach a temperature of 30 eV. Input energy is confined for almost 0.1 ms at the current peak, and the total discharge length is usually 4.5 ms. To simulate the current reversal phase in an ac tokamak reactor, a sinusoidal plasma current has been sustained for one cycle. Peak currents of 8 kA and electron densities of 1.8 x 10('13) cm('-3) have been attained. The electron density at the reversal is always at least 2 x 10('12) cm('-3). The unexpected equilibrium when the toroidal current goes through zero may be due to vertical plasma currents closing through the limiter or chamber walls. To induce turbulence for plasma heating, an electric field pulse of amplitude up to 360 V/m and width 20 (mu)s drives up to 10 kA of current on top of a normal discharge. After the pulse, electron temperatures of 300 eV and ion temperatures of 200 eV have been recorded. About 200 (mu)s after the pulse, the electron density and temperature reach a peak, implying that containment of energy is enhanced. The safety factor at the plasma surface during the pulse can be as low as 1.5. Disruptive behaviour, in the form of current interruption and loop voltage spikes, is observed when the safety factor is between 1.85 and 2.1. Outside this range, the

  5. Homer1/mGluR5 Activity Moderates Vulnerability to Chronic Social Stress

    PubMed Central

    Wagner, Klaus V; Hartmann, Jakob; Labermaier, Christiana; Häusl, Alexander S; Zhao, Gengjing; Harbich, Daniela; Schmid, Bianca; Wang, Xiao-Dong; Santarelli, Sara; Kohl, Christine; Gassen, Nils C; Matosin, Natalie; Schieven, Marcel; Webhofer, Christian; Turck, Christoph W; Lindemann, Lothar; Jaschke, Georg; Wettstein, Joseph G; Rein, Theo; Müller, Marianne B; Schmidt, Mathias V

    2015-01-01

    Stress-induced psychiatric disorders, such as depression, have recently been linked to changes in glutamate transmission in the central nervous system. Glutamate signaling is mediated by a range of receptors, including metabotropic glutamate receptors (mGluRs). In particular, mGluR subtype 5 (mGluR5) is highly implicated in stress-induced psychopathology. The major scaffold protein Homer1 critically interacts with mGluR5 and has also been linked to several psychopathologies. Yet, the specific role of Homer1 in this context remains poorly understood. We used chronic social defeat stress as an established animal model of depression and investigated changes in transcription of Homer1a and Homer1b/c isoforms and functional coupling of Homer1 to mGluR5. Next, we investigated the consequences of Homer1 deletion, overexpression of Homer1a, and chronic administration of the mGluR5 inverse agonist CTEP (2-chloro-4-((2,5-dimethyl-1-(4-(trifluoromethoxy)phenyl)-1H-imidazol-4-yl)ethynyl)pyridine) on the effects of chronic stress. In mice exposed to chronic stress, Homer1b/c, but not Homer1a, mRNA was upregulated and, accordingly, Homer1/mGluR5 coupling was disrupted. We found a marked hyperactivity behavior as well as a dysregulated hypothalamic–pituitary–adrenal axis activity in chronically stressed Homer1 knockout (KO) mice. Chronic administration of the selective and orally bioavailable mGluR5 inverse agonist, CTEP, was able to recover behavioral alterations induced by chronic stress, whereas overexpression of Homer1a in the hippocampus led to an increased vulnerability to chronic stress, reflected in an increased physiological response to stress as well as enhanced depression-like behavior. Overall, our results implicate the glutamatergic system in the emergence of stress-induced psychiatric disorders, and support the Homer1/mGluR5 complex as a target for the development of novel antidepressant agents. PMID:25409593

  6. Performance comparison between two axial active support schemes for 1-m thin meniscus primary mirror

    NASA Astrophysics Data System (ADS)

    Niu, D. S.; Wang, G. M.; Gu, B. Z.; Ye, Y.

    2013-03-01

    Active support scheme may decide the deformation of the optical surface figure of the primary mirror. Two main active axial support schemes are often adopted to the thin meniscus primary mirror, one scheme is that the axial supports normal to the mirror bottom surface, and the other is that the active forces parallel to the optical axis. In order to compare the performance of the two support schemes, 1-m thin meniscus primary mirror is conducted. Finite element analysis (FEA) is employed to analyze the optical surface figures of the primary mirror, and optimizations are carried out by using ANSYS for each support scheme to obtain the locations and active forces. The axial support force sensitivities are calculated for the two support schemes in a case that a single axial support has a force error of 0.5 N. The correction ability of the active support system for both of the support schemes are analyzed when an arbitrary axial support is failure. Several low order Zernike modes are modeled with MATLAB procedure, and active optics corrections are applied to these modes for the two active supports. The extra mirror surface error due to thermal deformation is also corrected with the two support schemes.

  7. Performance comparison between two active support schemes for 1-m primary mirror

    NASA Astrophysics Data System (ADS)

    Niu, Dongsheng; Wang, Guomin; Gu, Bozhong

    2012-09-01

    Active support scheme may decide the deformation of the optical surface figure of the primary mirror. Two active support schemes have been designed for 1-m primary mirror, and the performance of each support scheme is conducted. Finite element analysis (FEA) is employed to analyze the optical surface figures of the primary mirror, and optimizations are carried out by using ANSYS for each support scheme to obtain the locations of the axial support. When the locations are determined, axial support force sensitivities are calculated for the two support schemes in a case that a single axial support has a force error of 0.5N. The correction ability of the active support system for both of support schemes are analyzed when an arbitrary axial support is failure. Several low order Zernike modes are modeled with MATLAB procedure, and active optics corrections are applied to these modes for the two active supports. Thermal deformation of the mirror is also corrected for the two schemes.

  8. Silicic ash beds bracket Emeishan Large Igneous province to < 1 m.y. at ~ 260 Ma

    NASA Astrophysics Data System (ADS)

    Huang, Hu; Cawood, Peter A.; Hou, Ming-Cai; Yang, Jiang-Hai; Ni, Shi-Jun; Du, Yuan-Sheng; Yan, Zhao-Kun; Wang, Jun

    2016-11-01

    Claystone beds directly below and above the Emeishan basalts in SW China formed around the Guadalupian-Lopingian (G - L) boundary. Zircons from both levels give U-Pb ages of ~ 260 Ma, and are identical within-error to ages reported for the Emeishan Large Igneous Province (LIP). The claystones lack Nb - Ta anomalies on primitive mantle normalized elemental diagrams; zircons from these claystones have a geochemical affinity to within-plate-type magmas. These features, combined with the strong negative Eu anomalies in the zircons and high Al2O3/TiO2 ratios, indicate that claystones around the G - L boundary have a silicic volcanic component related to Emeishan LIP. Zircons from the underlying claystone bed have much higher U/Yb and Th/Nb ratios and lower εHf(t) values than those overlying the LIP, suggesting that early-stage silicic volcanic rocks had a higher crustal contamination or assimilation during magmatic processes. In terms of stratigraphic correlation, our data demonstrate that silicic eruptions occurred not only at the end, but also at the beginning of the Emeishan LIP, and the overall duration of the main basaltic phase was short (< 1 m.y).

  9. Posttranscriptional m(6)A Editing of HIV-1 mRNAs Enhances Viral Gene Expression.

    PubMed

    Kennedy, Edward M; Bogerd, Hal P; Kornepati, Anand V R; Kang, Dong; Ghoshal, Delta; Marshall, Joy B; Poling, Brigid C; Tsai, Kevin; Gokhale, Nandan S; Horner, Stacy M; Cullen, Bryan R

    2016-05-11

    Covalent addition of a methyl group to adenosine N(6) (m(6)A) is an evolutionarily conserved and common RNA modification that is thought to modulate several aspects of RNA metabolism. While the presence of multiple m(6)A editing sites on diverse viral RNAs was reported starting almost 40 years ago, how m(6)A editing affects virus replication has remained unclear. Here, we used photo-crosslinking-assisted m(6)A sequencing techniques to precisely map several m(6)A editing sites on the HIV-1 genome and report that they cluster in the HIV-1 3' untranslated region (3' UTR). Viral 3' UTR m(6)A sites or analogous cellular m(6)A sites strongly enhanced mRNA expression in cis by recruiting the cellular YTHDF m(6)A "reader" proteins. Reducing YTHDF expression inhibited, while YTHDF overexpression enhanced, HIV-1 protein and RNA expression, and virus replication in CD4+ T cells. These data identify m(6)A editing and the resultant recruitment of YTHDF proteins as major positive regulators of HIV-1 mRNA expression. PMID:27117054

  10. CFRP composite optical telescope assembly for the 1 m ULTRA project

    NASA Astrophysics Data System (ADS)

    Martin, Robert N.; Romeo, Robert C.

    2006-06-01

    The focus of the ULTRA Project is to develop and test Ultra-Lightweight Technology for Research applications in Astronomy. The ULTRA project is a collaborative effort involving the private firm Composite Mirror Applications, Inc (CMA) and 3 universities: University of Kansas, San Diego State University, and Dartmouth College. Funding for ULTRA is predominately from a NSF three year MRI program grant to CMA and KU with additional support from CMA, KU and SDSU. The goal of the ULTRA program is to demonstrate that a viable alternative exists to traditional glass mirror and steel telescope technology by designing, fabricating and testing a research telescope constructed from carbon fiber reinforced plastic (CFRP) materials. In particular, a 1m diameter, Cassegrain telescope optics set and optical tube assembly (OTA) are being designed and fabricated by CMA. The completed telescope will be deployed at SDSU's Mt Laguna Observatory in a refurbished structure (new dome and mount provided via KU and SDSU). We expect that a successful completion and testing of this project will lead to future use of CFRP technology in larger telescopes and segmented telescopes. This paper describes the OTA (optical tube assembly) that has been developed for the ULTRA project. The mirror technology is described in another paper in this conference. A poster describes the ULTRA project overview in more detail.

  11. Cooperation between scientists, NGOs and industry in support of sustainable fisheries: the South African hake Merluccius spp. trawl fishery experience.

    PubMed

    Field, J G; Attwood, C G; Jarre, A; Sink, K; Atkinson, L J; Petersen, S

    2013-10-01

    This paper examines the increasingly close interaction between natural and social scientists, non-governmental organizations (NGO) and industry, in pursuit of responsible ecosystem-based management of fisheries. South Africa has committed to implementing an ecosystem approach to fisheries management. Management advice stems from multi-stakeholder representation on government-led scientific and management working groups. In the hake Merluccius capensis and Merluccius paradoxus fishery, the primary management measure is an annual total allowable catch (TAC), the level of which is calculated using a management procedure (MP) that is revised approximately every 4 years. Revision of the MP is a consultative process involving most stakeholders, and is based on simulation modelling of projected probable scenarios of resource and fishery dynamics under various management options. NGOs, such as the Worldwide Fund for Nature in South Africa (WWF-SA), have played an important role in influencing consumers, the fishing industry and government to develop responsible fishing practices that minimize damage to marine ecosystems. Cooperation between industry, government and scientists has helped to improve sustainability and facilitated the meeting of market-based incentives for more responsible fisheries. Research includes ecosystem modelling, spatial analysis and ecosystem risk assessment with increasing research focus on social and economic aspects of the fishery. A four-year cooperative experiment to quantify the effect of trawling on benthic community structure is being planned. The food requirements of top predators still need to be included in the TAC-setting formulae and more social and economic research is needed. This paper also demonstrates how NGO initiatives such as Marine Stewardship Council certification and the Southern African Sustainable Seafood Initiative, a traffic light system of classifying seafood for consumers, have contributed to responsible fishing

  12. Great Lakes prey fish populations: a cross-basin overview of status and trends based on bottom trawl surveys, 1978-2013

    USGS Publications Warehouse

    Gorman, Owen T.; Weidel, Brian C.

    2014-01-01

    The assessment of Great Lakes prey fish stocks have been conducted annually with bottom trawls since the 1970s by the Great Lakes Science Center, sometimes assisted by partner agencies. These stock assessments provide data on the status and trends of prey fish that are consumed by important commercial and recreational fishes. Although all these annual surveys are conducted using bottom trawls, they differ among the lakes in the proportion of the lake covered, seasonal timing, trawl gear used, and the manner in which the trawl is towed (across or along bottom contours). Because each assessment is unique, population indices were standardized to the highest value for a time series within each lake for the following prey species: Cisco (Coregonus artedi), Bloater (C. hoyi), Rainbow Smelt (Osmerus mordax), Alewife (Alosa pseudoharengus), and Round Goby (Neogobius melanostomus). In this report, standardized indices are presented in graphical form along with synopses to provide a short, informal cross-basin summary of the status and trends of principal prey fishes. There was basin-wide agreement in the trends of age-1 and older biomass for all prey species, with the highest concordance occurring for coregonids and Rainbow Smelt, and weaker concordance for Alewife. For coregonids, the highest biomass occurred from the mid-1980s to the mid-1990s. Rainbow Smelt biomass declined slowly and erratically during the last quarter century. Alewife biomass was generally higher from the early 1980s through 1990s across the Great Lakes, but since the early 1990s, trends have been divergent across the lakes, though there has been a downward trend in all lakes since 2005. Recently, Lake Huron has shown resurgence in biomass of Bloater, achieving 75% of its maximum record in 2012 due to recruitment of a succession of strong and moderate year classes that appeared in 2005-2011. Also, strong recruitment of the 2010 year class of Alewife has led to a sharp increase in biomass of Alewife in

  13. Beam geometry selection using sequential beam addition

    SciTech Connect

    Popple, Richard A. Brezovich, Ivan A.; Fiveash, John B.

    2014-05-15

    Purpose: The selection of optimal beam geometry has been of interest since the inception of conformal radiotherapy. The authors report on sequential beam addition, a simple beam geometry selection method, for intensity modulated radiation therapy. Methods: The sequential beam addition algorithm (SBA) requires definition of an objective function (score) and a set of candidate beam geometries (pool). In the first iteration, the optimal score is determined for each beam in the pool and the beam with the best score selected. In the next iteration, the optimal score is calculated for each beam remaining in the pool combined with the beam selected in the first iteration, and the best scoring beam is selected. The process is repeated until the desired number of beams is reached. The authors selected three treatment sites, breast, lung, and brain, and determined beam arrangements for up to 11 beams from a pool comprised of 25 equiangular transverse beams. For the brain, arrangements were additionally selected from a pool of 22 noncoplanar beams. Scores were determined for geometries comprised equiangular transverse beams (EQA), as well as two tangential beams for the breast case. Results: In all cases, SBA resulted in scores superior to EQA. The breast case had the strongest dependence on beam geometry, for which only the 7-beam EQA geometry had a score better than the two tangential beams, whereas all SBA geometries with more than two beams were superior. In the lung case, EQA and SBA scores monotonically improved with increasing number of beams; however, SBA required fewer beams to achieve scores equivalent to EQA. For the brain case, SBA with a coplanar pool was equivalent to EQA, while the noncoplanar pool resulted in slightly better scores; however, the dose-volume histograms demonstrated that the differences were not clinically significant. Conclusions: For situations in which beam geometry has a significant effect on the objective function, SBA can identify

  14. Beam-Bem interactions

    SciTech Connect

    Kim, Hyung Jin; /Fermilab

    2011-12-01

    In high energy storage-ring colliders, the nonlinear effect arising from beam-beam interactions is a major source that leads to the emittance growth, the reduction of beam life time, and limits the collider luminosity. In this paper, two models of beam-beam interactions are introduced, which are weak-strong and strong-strong beam-beam interactions. In addition, space-charge model is introduced.

  15. M1/M2-macrophage phenotypes regulate renal calcium oxalate crystal development

    PubMed Central

    Taguchi, Kazumi; Okada, Atsushi; Hamamoto, Shuzo; Unno, Rei; Moritoki, Yoshinobu; Ando, Ryosuke; Mizuno, Kentaro; Tozawa, Keiichi; Kohri, Kenjiro; Yasui, Takahiro

    2016-01-01

    In our previous report, M2-macrophage (Mφs) deficient mice showed increased renal calcium oxalate (CaOx) crystal formation; however, the role of Mφs-related-cytokines and chemokines that affect kidney stone formation remains unknown. Here, we investigated the role of M1/M2s in crystal development by using in vitro and in vivo approaches. The crystal phagocytic rate of bone marrow-derived M2Mφs was higher than that of bone marrow-derived Mφs and M1Mφs and increased on co-culture with renal tubular cells (RTCs). However, the amount of crystal attachment on RTCs reduced on co-culture with M2Mφs. In six hyperoxaluric C57BL/6J mice, M1Mφ transfusion and induction by LPS and IFN-γ facilitated renal crystal formation, whereas M2Mφ transfusion and induction by IL-4 and IL-13 suppressed renal crystal formation compared with the control. These M2Mφ treatments reduced the expression of crystal-related genes, such as osteopontin and CD44, whereas M1Mφ treatment increased the expression of pro-inflammatory and adhesion-related genes such as IL-6, inducible NOS, TNF-α, C3, and VCAM-1. The expression of M2Mφ-related genes was lower whereas that of M1Mφ-related genes was higher in papillary tissue of CaOx stone formers. Overall, our results suggest that renal crystal development is facilitated by M1Mφs, but suppressed by M2Mφs. PMID:27731368

  16. Some properties of YBamCu1+mOy(m = 2, 3, 4, 5) superconductors

    NASA Astrophysics Data System (ADS)

    Chainok, Piyamas; Khuntak, Thanarat; Sujinnapram, Supphadate; Tiyasri, Somporn; Wongphakdee, Wirat; Kruaehong, Thitipong; Nilkamjon, Tunyanop; Ratreng, Sermsuk; Udomsamuthirun, Pongkaew

    2015-02-01

    We synthesized the YBamCu1+mOy superconductors; m = 2, 3, 4, 5 that were Y123 (YBa2 Cu3O7-x), Y134 (YBa3Cu4O9-x), Y145 (YBa4Cu5O11-x), Y156 (YBa5Cu6O13-x), by solid state reaction with the Y2O3, BaCO3 and CuO as the beginning materials. The calcination temperature was 950°C and varied the sintering temperature to be 950°C and 980°C. The resistivity measurement by four-point-probe technique showed that the Tconset of Y123, Y134, Y145, Y156 were at 97, 93, 91, 85 K, respectively. The XRD and Rietveld full-profile analysis method were used and found that the crystal structure was in the orthorhombic with Pmmm space group with the ratio c/a were 3.0, 4.0, 5.0 and 6.0 for Y123, Y134, Y145 and Y156, respectively. The oxygen content was characterized by Iodometric titration. The (Cu3+/Cu2+ and Oxygen content) were (0.28, 6.83), (0.19, 8.81), (0.13, 10.79), (0.16, 12.92) of Y123, Y134, Y145, Y156, respectively. We also found that the increasing of sintering temperature has reduced the oxygen content and the critical temperature of all samples.

  17. Rac2 Controls Tumor Growth, Metastasis and M1-M2 Macrophage Differentiation In Vivo

    PubMed Central

    Joshi, Shweta; Singh, Alok R.; Zulcic, Muamera; Bao, Lei; Messer, Karen; Ideker, Trey; Dutkowski, Janusz; Durden, Donald L.

    2014-01-01

    Although it is well-established that the macrophage M1 to M2 transition plays a role in tumor progression, the molecular basis for this process remains incompletely understood. Herein, we demonstrate that the small GTPase, Rac2 controls macrophage M1 to M2 differentiation and the metastatic phenotype in vivo. Using a genetic approach, combined with syngeneic and orthotopic tumor models we demonstrate that Rac2-/- mice display a marked defect in tumor growth, angiogenesis and metastasis. Microarray, RT-PCR and metabolomic analysis on bone marrow derived macrophages isolated from the Rac2-/- mice identify an important role for Rac2 in M2 macrophage differentiation. Furthermore, we define a novel molecular mechanism by which signals transmitted from the extracellular matrix via the α4β1 integrin and MCSF receptor lead to the activation of Rac2 and potentially regulate macrophage M2 differentiation. Collectively, our findings demonstrate a macrophage autonomous process by which the Rac2 GTPase is activated downstream of the α4β1 integrin and the MCSF receptor to control tumor growth, metastasis and macrophage differentiation into the M2 phenotype. Finally, using gene expression and metabolomic data from our Rac2-/- model, and information related to M1-M2 macrophage differentiation curated from the literature we executed a systems biologic analysis of hierarchical protein-protein interaction networks in an effort to develop an iterative interactome map which will predict additional mechanisms by which Rac2 may coordinately control macrophage M1 to M2 differentiation and metastasis. PMID:24770346

  18. Long-term impact of bottom trawling on pelagic-benthic coupling in the southern North Sea (German Bight)

    NASA Astrophysics Data System (ADS)

    Friedrich, Jana; van Beusekom, Justus E. E.; Neumann, Andreas; Naderipour, Celine; Janssen, Felix; Ahmerkamp, Soeren; Holtappels, Moritz; Schueckel, Ulrike

    2016-04-01

    The southern North Sea, and the German Bight, has been systematically bottom-trawled at least since the late 19th century (Christiansen, 2009; Reiss et al., 2009; Kröncke 2011; Emeis et al., 2015, Neumann et al., 2016). As a result, benthic habitats and benthic biogenic structures created by bivalves, polychaetes and hydroids where destroyed or reduced. The parallel removal of hard substrate (gravel and boulders) avoids the resettlement of hard-substrate depended species. For example, the Oyster ground, a huge oyster bank a hundred years ago (Olsen, 1883), turned into a muddy depression today. In addition, shallow depth of max 40 m, strong tidal currents and frequent storms result in a high-energy environment with low sedimentation rates and recurrent sediment resuspension. The decrease in benthic filtering capacity by disturbance in epifauna and bottom roughness (Callaway et al., 2007) apparently influence pelagic-benthic coupling of biogeochemical fluxes. Heip et al. (1995) indicate that benthic respiration at depths prevailing in the German Bight accounts for 10-40% of total respiration, whereas pelagic respiration accounts for 60-90%. Previous estimates are in the middle of this range (Heip et al., 1995). To test these hypotheses and to assess the partitioning of benthic and pelagic processes, and the factors influencing organic matter mineralization, we measured pelagic production and respiration based on Winkler titration, in-situ benthic fluxes using chamber landers, we did ex-situ incubations of intact sediment cores and analysed still images from a towed benthic video sled. In addition, O2 fluxes in permeable sediments were estimated by integrating the volumetric rate measurements of the upper sediment layer over in-situ microsensor-measured O2 penetration depth. Our current results show significant seasonality in benthic respiration, with highest rates in summer and lowest rates in winter. No significant differences in total benthic respiration rates

  19. Long-term impact of bottom trawling on pelagic-benthic coupling in the southern North Sea (German Bight)

    NASA Astrophysics Data System (ADS)

    Friedrich, Jana; van Beusekom, Justus E. E.; Neumann, Andreas; Naderipour, Celine; Janssen, Felix; Ahmerkamp, Soeren; Holtappels, Moritz; Schueckel, Ulrike

    2016-04-01

    The southern North Sea, and the German Bight, has been systematically bottom-trawled at least since the late 19th century (Christiansen, 2009; Reiss et al., 2009; Kröncke 2011; Emeis et al., 2015, Neumann et al., 2016). As a result, benthic habitats and benthic biogenic structures created by bivalves, polychaetes and hydroids where destroyed or reduced. The parallel removal of hard substrate (gravel and boulders) avoids the resettlement of hard-substrate depended species. For example, the Oyster ground, a huge oyster bank a hundred years ago (Olsen, 1883), turned into a muddy depression today. In addition, shallow depth of max 40 m, strong tidal currents and frequent storms result in a high-energy environment with low sedimentation rates and recurrent sediment resuspension. The decrease in benthic filtering capacity by disturbance in epifauna and bottom roughness (Callaway et al., 2007) apparently influence pelagic-benthic coupling of biogeochemical fluxes. Heip et al. (1995) indicate that benthic respiration at depths prevailing in the German Bight accounts for 10-40% of total respiration, whereas pelagic respiration accounts for 60-90%. Previous estimates are in the middle of this range (Heip et al., 1995). To test these hypotheses and to assess the partitioning of benthic and pelagic processes, and the factors influencing organic matter mineralization, we measured pelagic production and respiration based on Winkler titration, in-situ benthic fluxes using chamber landers, we did ex-situ incubations of intact sediment cores and analysed still images from a towed benthic video sled. In addition, O2 fluxes in permeable sediments were estimated by integrating the volumetric rate measurements of the upper sediment layer over in-situ microsensor-measured O2 penetration depth. Our current results show significant seasonality in benthic respiration, with highest rates in summer and lowest rates in winter. No significant differences in total benthic respiration rates

  20. Clinical usefulness of WT1 mRNA expression in bone marrow detected by a new WT1 mRNA assay kit for monitoring acute myeloid leukemia: a comparison with expression of WT1 mRNA in peripheral blood.

    PubMed

    Kitamura, Kunio; Nishiyama, Takahiro; Ishiyama, Ken; Miyawaki, Shuichi; Miyazaki, Kanji; Suzuki, Kenshi; Masaie, Hiroaki; Okada, Masaya; Ogawa, Hiroyasu; Imai, Kiyotoshi; Kiyoi, Hitoshi; Naoe, Tomoki; Yokoyama, Yasuhisa; Chiba, Shigeru; Hata, Tomoko; Miyazaki, Yasushi; Hatta, Yoshihiro; Takeuchi, Jin; Nannya, Yasuhito; Kurokawa, Mineo; Ueda, Yasunori; Koga, Daisuke; Sugiyama, Haruo; Takaku, Fumimaro

    2016-01-01

    We have previously shown the clinical usefulness of Wilms' tumor 1 gene (WT1) mRNA expression in peripheral blood (PB) as a minimal residual disease (MRD) monitoring marker in 191 acute myeloid leukemia (AML) patients using the WT1 mRNA assay kit "Otsuka" (Otsuka Pharmaceutical Co., Ltd.; "former kit"). In contrast, the usefulness of WT1 mRNA expression in bone marrow (BM) has been investigated in only a limited number of subjects using former kit. Following that previous study, a next-generation kit, WT1 mRNA assay kit II "Otsuka" (Otsuka Pharmaceutical Co., Ltd.; "new kit") has been newly developed. In the present study, we aimed to evaluate the performance of the new kit and to investigate the clinical usefulness of WT1 mRNA expression in BM. The PB and BM were collected on the same day from 164 blood disease patients, including 118 AML patients. WT1 mRNA expression was determined using the new and former kits and the values obtained were compared. The performance of new kit was shown to be equivalent to that of former kit. As reported in PB, WT1 mRNA expression in BM was found to be a useful marker for monitoring disease status as well as for a diagnosis of early stage relapse in AML patients. PMID:26520650

  1. 50 CFR Table 3 (south) to Part 660... - Non-Trawl Rockfish Conservation Areas and Trip Limits for Open Access Gears South of 40°10′ N. Lat.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Non-Trawl Rockfish Conservation Areas and Trip Limits for Open Access Gears South of 40°10ⲠN. Lat. 3 Table 3 (South) to Part 660, Subpart F Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC...

  2. 50 CFR Table 3 (north) to Part 660... - Non-Trawl Rockfish Conservation Areas and Trip Limits for Open Access Gears North of 40°10′ N. Lat.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Non-Trawl Rockfish Conservation Areas and Trip Limits for Open Access Gears North of 40°10ⲠN. Lat. 3 Table 3 (North) to Part 660, Subpart F Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC...

  3. Acute Endoplasmic Reticulum Stress-Independent Unconventional Splicing of XBP1 mRNA in the Nucleus of Mammalian Cells.

    PubMed

    Wang, Yuanyuan; Xing, Pan; Cui, Wenjing; Wang, Wenwen; Cui, Yanfen; Ying, Guoguang; Wang, Xin; Li, Binghui

    2015-06-10

    The regulation of expression of X-box-binding protein-1 (XBP1), a transcriptional factor, involves an unconventional mRNA splicing that removes the 26 nucleotides intron. In contrast to the conventional splicing that exclusively takes place in the nucleus, determining the location of unconventional splicing still remains controversial. This study was designed to examine whether the unconventional spicing of XBP1 mRNA could occur in the nucleus and its possible biological relevance. We use RT-PCR reverse transcription system and the expand high fidelity PCR system to detect spliced XBP1 mRNA, and fraction cells to determine the location of the unconventional splicing of XBP1 mRNA. We employ reporter constructs to show the presence of unconventional splicing machinery in mammal cells independently of acute endoplasmic reticulum (ER) stress. Our results reveal the presence of basal unconventional splicing of XBP1 mRNA in the nucleus that also requires inositol-requiring transmembrane kinase and endonuclease 1α (IRE1α) and can occur independently of acute ER stress. Furthermore, we confirm that acute ER stress induces the splicing of XBP1 mRNA predominantly occurring in the cytoplasm, but it also promotes the splicing in the nucleus. The deletion of 5'-nucleotides in XBP1 mRNA significantly increases its basal unconventional splicing, suggesting that the secondary structure of XBP1 mRNA may determine the location of unconventional splicing. These results suggest that the unconventional splicing of XBP1 mRNA can take place in the nucleus and/or cytoplasm, which possibly depends on the elaborate regulation. The acute ER stress-independent unconventional splicing in the nucleus is most likely required for the maintaining of day-to-day folding protein homeostasis.

  4. Suberoylanilide hydroxamic acid (SAHA) inhibits EGF-induced cell transformation via reduction of cyclin D1 mRNA stability

    SciTech Connect

    Zhang, Jingjie; Ouyang, Weiming; Li, Jingxia; Zhang, Dongyun; Yu, Yonghui; Wang, York; Li, Xuejun; Huang, Chuanshu

    2012-09-01

    Suberoylanilide hydroxamic acid (SAHA) inhibiting cancer cell growth has been associated with its downregulation of cyclin D1 protein expression at transcription level or translation level. Here, we have demonstrated that SAHA inhibited EGF-induced Cl41 cell transformation via the decrease of cyclin D1 mRNA stability and induction of G0/G1 growth arrest. We found that SAHA treatment resulted in the dramatic inhibition of EGF-induced cell transformation, cyclin D1 protein expression and induction of G0/G1 growth arrest. Further studies showed that SAHA downregulation of cyclin D1 was only observed with endogenous cyclin D1, but not with reconstitutionally expressed cyclin D1 in the same cells, excluding the possibility of SAHA regulating cyclin D1 at level of protein degradation. Moreover, SAHA inhibited EGF-induced cyclin d1 mRNA level, whereas it did not show any inhibitory effect on cyclin D1 promoter-driven luciferase reporter activity under the same experimental conditions, suggesting that SAHA may decrease cyclin D1 mRNA stability. This notion was supported by the results that treatment of cells with SAHA decreased the half-life of cyclin D1 mRNA from 6.95 h to 2.57 h. Consistent with downregulation of cyclin D1 mRNA stability, SAHA treatment also attenuated HuR expression, which has been well-characterized as a positive regulator of cyclin D1 mRNA stability. Thus, our study identifies a novel mechanism responsible for SAHA inhibiting cell transformation via decreasing cyclin D1 mRNA stability and induction of G0/G1 growth arrest in Cl41 cells. -- Highlights: ► SAHA inhibits cell transformation in Cl41 cells. ► SAHA suppresses Cyclin D1 protein expression. ► SAHA decreases cyclin D1 mRNA stability.

  5. Simple beam profile monitor

    SciTech Connect

    Gelbart, W.; Johnson, R. R.; Abeysekera, B.

    2012-12-19

    An inexpensive beam profile monitor is based on the well proven rotating wire method. The monitor can display beam position and shape in real time for particle beams of most energies and beam currents up to 200{mu}A. Beam shape, position cross-section and other parameters are displayed on a computer screen.

  6. Earth's normal mode spectrum below 1mHz observed with a superconducting gravimeter

    NASA Astrophysics Data System (ADS)

    Raja-Halli, A.; Virtanen, H.; Ruotsalainen, H.

    2012-04-01

    We present new observations of the normal modes 0S2, 0T2, 2S1 and 0S3 observed with the GWR T020 superconducting gravimeter at Metsähovi, Finland. Superconducting gravimeter is well suited for observing the normal mode spectrum of the Earth, primarily due to the low noise levels at seismic bands. Especially in the frequencies below 1mHz, superconducting gravimeters can provide valuable information on the behavior of the modes and further about the Earth's internal structure. The superconducting gravimeter GWR no.T020 has been operating continuously at Metsähovi, since August 1994. We have studied the gravimeter data after larger than magnitude M=8.0 earthquakes, which have occurred between August 1994 and December 2011. A total of 20 M>8.0 earthquakes occurred during this time. In this study we will show the observational threshold level of the GWR T020 gravimeter for the modes 0S2, 2S1, 0S3 and 0T2, and examine the behaviour of these modes. The properties of these gravest normal modes are of great interest as they are a direct result of the Earth's density profile and hence help to constrain the Earth models. The mode 0S2 can be observed in all studied spectra. However, the amplitude of the mode is only slightly above the noise level of 0.01nm/s2 after the weakest earthquakes studied. After earthquakes with magnitudes M>8.4 the splitting of the mode 0S2 into five separate peaks can be clearly seen in the 240 hour spectrum as well as the splitting of the mode 0S3. Modes 2S1 and 0T2 are detected just above the noise level after M>8.8 earthquakes. The toroidal mode 0T2 is observable with gravimeters only due to coupling effects created by rotating Earth and hence is observable only after the most powerful earthquakes studied. In addition we will present a comparison of the observed normal mode frequencies to the theoretical frequencies of the Earth's models PREM and 1066A. The comparison shows slight differences between the theoretical and observed frequency.

  7. Reviving astrometry on the McDonald observatory 2.1-m Otto Struve telescope

    NASA Astrophysics Data System (ADS)

    Ries, J.; Riddle, A.

    2014-07-01

    The first regular observations of asteroids at McDonald observatory started in 1950 with a 10-inch telescope as part of the Yerkes-McDonald survey, which was followed by a long lull after its completion in 1952. Astrometric observations resumed in the early 70s using the 2.1-m telescope, but were mainly of faint outer solar system satellites to support the emerging planetary space program. Observation of asteroids was later added to the program in order to refine the fundamental reference frame and to aid Hubble Space Telescope astrometry. Near-Earth Objects (NEOs) have been the main emphasis since 1995 using a 0.76 m telescope, which worked very well while the surveys concentrated on objects 1 km or larger. However, NASA's mission to discover and catalogue NEOs has been extended down to objects 140 m in size. Most of these new NEO candidates are outside the reach of the 0.76-m telescope. In 2011, the Otto Struve telescope has received a new instrument, the Camera for QUasars in EArly uNiverse, or CQUEAN (Park, 2012). The telescope-camera combination allows us to follow up virtually any object discovered by the various NEO search teams, as it provides measurable images of a 19th magnitude source with a single 10 second exposure in the red. The field of view is 4.8' by 4.8', with 0.281 arcsec/pixel resolution, and we can fully sample the point-spread function for precision astrometry. Although this telescope is 75 years old, we are getting circular stellar images for exposures up to 240 seconds with the CQUEAN auto-guider. We obtained images of M71 at three different air masses during two nights in the Sloan i and r filter bands. The σ of the standard coordinate residuals is a little under 0.07 seconds of arc for both cases. We have also looked at the field of view for systematic errors both in direction and magnitude, and we found it to be satisfactorily uniform. The overall quality of our data is improved due to better angular resolution and dome seeing. Based on

  8. Laser beam monitoring system

    DOEpatents

    Weil, Bradley S.; Wetherington, Jr., Grady R.

    1985-01-01

    Laser beam monitoring systems include laser-transparent plates set at an angle to the laser beam passing therethrough and light sensor for detecting light reflected from an object on which the laser beam impinges.

  9. Relativistic electron beam generator

    DOEpatents

    Mooney, L.J.; Hyatt, H.M.

    1975-11-11

    A relativistic electron beam generator for laser media excitation is described. The device employs a diode type relativistic electron beam source having a cathode shape which provides a rectangular output beam with uniform current density.

  10. Aerosol–climate interactions in the Norwegian Earth System Model – NorESM1-M

    SciTech Connect

    Kirkevåg, A.; Iversen, T.; Seland, Ø.; Hoose, C.; Kristjánsson, J. E.; Struthers, H.; Ekman, A. M. L.; Ghan, S.; Griesfeller, J.; Nilsson, E. D.; Schulz, M.

    2013-01-01

    The objective of this study is to document and evaluate recent changes and updates to the module for aerosols and aerosol–cloud–radiation interactions in the atmospheric module CAM4-Oslo of the core version of the Norwegian Earth System Model (NorESM), NorESM1-M. Particular attention is paid to the role of natural organics, sea salt, and mineral dust in determining the gross aerosol properties as well as the anthropogenic contribution to these properties and the associated direct and indirect radiative forcing. The aerosol module is extended from earlier versions that have been published, and includes life-cycling of sea salt, mineral dust, particulate sulphate, black carbon, and primary and secondary organics. The impacts of most of the numerous changes since previous versions are thoroughly explored by sensitivity experiments. The most important changes are: modified prognostic sea salt emissions; updated treatment of precipitation scavenging and gravitational settling; inclusion of biogenic primary organics and methane sulphonic acid (MSA) from oceans; almost doubled production of land-based biogenic secondary organic aerosols (SOA); and increased ratio of organic matter to organic carbon (OM/OC) for biomass burning aerosols from 1.4 to 2.6. Compared with in situ measurements and remotely sensed data, the new treatments of sea salt and dust aerosols give smaller biases in near-surface mass concentrations and aerosol optical depth than in the earlier model version. The model biases for mass concentrations are approximately unchanged for sulphate and BC. The enhanced levels of modeled OM yield improved overall statistics, even though OM is still underestimated in Europe and overestimated in North America. The global anthropogenic aerosol direct radiative forcing (DRF) at the top of the atmosphere has changed from a small positive value to -0.08 W m-2 in CAM4-Oslo. The sensitivity tests suggest that this change can be attributed to the new treatment of biomass

  11. Fermilab PXIE Beam Diagnostics Development and Testing at the HINS Beam Facility

    SciTech Connect

    Lebedev, V.A.; Shemyakin, A.V.; Steimel, J.; Wendt, M.; Hanna, B.M.; Prost, L.R.; Scarpine, V.E.; /Fermilab

    2012-05-01

    Fermilab is planning the construction of a prototype front end of the Project X linac. The Project X Injector Experiment (PXIE) is expected to accelerate 1 mA CW H- beam up to 30 MeV. Some of the major goals of the project are to test a CW RFQ and H- source, a broadband bunch-by-bunch beam chopper and a low-energy superconducting linac. The successful characterization and operation of such an accelerator place stringent requirements on beamline diagnostics. These crucial beam measurements include bunch currents, beam orbit, beam phase, bunch length, transverse profile and emittance and beam halo and tails, as well as the extinction performance of the broadband chopper. This paper presents PXIE beam measurement requirements and instrumentation development plans. Presented are plans to test key instruments at the Fermilab High Intensity Neutrino Source (HINS) beam facility. Since HINS is already an operational accelerator, utilizing HINS for instrumentation testing will allow for quicker development of the required PXIE diagnostics.

  12. Knockdown of PU.1 AS lncRNA inhibits adipogenesis through enhancing PU.1 mRNA translation.

    PubMed

    Pang, Wei-Jun; Lin, Li-Gen; Xiong, Yan; Wei, Ning; Wang, Yu; Shen, Qing-Wu; Yang, Gong-She

    2013-11-01

    PU.1 is an Ets family transcription factor involved in the myelo-lymphoid differentiation. We have previously demonstrated that PU.1 is also expressed in the adipocyte lineage. However, the expression levels of PU.1 mRNA and protein in preadipocytes do not match the levels in mature adipocytes. PU.1 mRNA level is higher in preadipocytes, whereas its protein is expressed in the adipocytes but not in the preadipocytes. The underlying mechanism remains elusive. Here, we find that miR-155 knockdown or overexpression has no effect on the levels of PU.1 mRNA and protein in preadipocytes or adipocytes. MiR-155 regulates adipogenesis not through PU.1, but via C/EBPβ which is another target of miR-155. We also checked the expression levels of PU.1 mRNA and antisense long non-coding RNA (AS lncRNA). Interestingly, compared with the level of PU.1 mRNA, the level of PU.1 AS lncRNA is much higher in preadipocytes, whereas it is opposite in the adipocytes. We further discover that PU.1 AS lncRNA binds to its mRNA forming an mRNA/AS lncRNA compound. The knockdown of PU.1 AS by siRNA inhibits adipogenesis and promotes PU.1 protein expression in both preadipocytes and adipocytes. Furthermore, the repression of PU.1 AS decreases the expression and secretion of adiponectin. We also find that the effect of retroviral-mediated PU.1 AS knockdown on adipogenesis is consistent with that of PU.1 AS knockdown by siRNA. Taken together, our results suggest that PU.1 AS lncRNA promotes adipogenesis through preventing PU.1 mRNA translation via binding to PU.1 mRNA to form mRNA/AS lncRNA duplex in preadipocytes.

  13. Beam imaging sensor

    DOEpatents

    McAninch, Michael D.; Root, Jeffrey J.

    2016-07-05

    The present invention relates generally to the field of sensors for beam imaging and, in particular, to a new and useful beam imaging sensor for use in determining, for example, the power density distribution of a beam including, but not limited to, an electron beam or an ion beam. In one embodiment, the beam imaging sensor of the present invention comprises, among other items, a circumferential slit that is either circular, elliptical or polygonal in nature.

  14. NK Muon Beam

    SciTech Connect

    Koizumi, G.

    1988-09-28

    The NK Muon Beam will be a modified version of the existing NT beam line. The decision to employ a modified version of the NT beam line was made based on considerations of cost and availability of the beam line. Preliminary studies considered use of other beam lines, e.g., the NW beam line, and even of moving the bubble chamber with its superconducting coils but were rejected for reasons such as cost, personnel limitations, and potential conflicts with other users.

  15. Tunable beam displacer

    SciTech Connect

    Salazar-Serrano, Luis José; Valencia, Alejandra; Torres, Juan P.

    2015-03-15

    We report the implementation of a tunable beam displacer, composed of a polarizing beam splitter (PBS) and two mirrors, that divides an initially polarized beam into two parallel beams whose separation can be continuously tuned. The two output beams are linearly polarized with either vertical or horizontal polarization and no optical path difference is introduced between them. The wavelength dependence of the device as well as the maximum separation between the beams achievable is limited mainly by the PBS characteristics.

  16. BEAM INSTRUMENTATION FOR HIGH POWER HADRON BEAMS

    SciTech Connect

    Aleksandrov, Alexander V

    2013-01-01

    This presentation will describe developments in the beam diagnostics which support the understanding and operation of high power hadron accelerators. These include the measurement of large dynamic range transverse and longitudinal beam profiles, beam loss detection, and non-interceptive diagnostics.

  17. Propagation-invariant beams with quantum pendulum spectra: from Bessel beams to Gaussian beam-beams.

    PubMed

    Dennis, Mark R; Ring, James D

    2013-09-01

    We describe a new class of propagation-invariant light beams with Fourier transform given by an eigenfunction of the quantum mechanical pendulum. These beams, whose spectra (restricted to a circle) are doubly periodic Mathieu functions in azimuth, depend on a field strength parameter. When the parameter is zero, pendulum beams are Bessel beams, and as the parameter approaches infinity, they resemble transversely propagating one-dimensional Gaussian wave packets (Gaussian beam-beams). Pendulum beams are the eigenfunctions of an operator that interpolates between the squared angular momentum operator and the linear momentum operator. The analysis reveals connections with Mathieu beams, and insight into the paraxial approximation.

  18. Ultrasmall PdmMn1-mOx binary alloyed nanoparticles on graphene catalysts for ethanol oxidation in alkaline media

    NASA Astrophysics Data System (ADS)

    Ahmed, Mohammad Shamsuddin; Park, Dongchul; Jeon, Seungwon

    2016-03-01

    A rare combination of graphene (G)-supported palladium and manganese in mixed-oxides binary alloyed catalysts (BACs) have been synthesized with the addition of Pd and Mn metals in various ratios (G/PdmMn1-mOx) through a facile wet-chemical method and employed as an efficient anode catalyst for ethanol oxidation reaction (EOR) in alkaline fuel cells. The as prepared G/PdmMn1-mOx BACs have been characterized by several instrumental techniques; the transmission electron microscopy images show that the ultrafine alloyed nanoparticles (NPs) are excellently monodispersed onto the G. The Pd and Mn in G/PdmMn1-mOx BACs have been alloyed homogeneously, and Mn presents in mixed-oxidized form that resulted by X-ray diffraction. The electrochemical performances, kinetics and stability of these catalysts toward EOR have been evaluated using cyclic voltammetry in 1 M KOH electrolyte. Among all G/PdmMn1-mOx BACs, the G/Pd0.5Mn0.5Ox catalyst has shown much superior mass activity and incredible stability than that of pure Pd catalysts (G/Pd1Mn0Ox, Pd/C and Pt/C). The well dispersion, ultrafine size of NPs and higher degree of alloying are the key factor for enhanced and stable EOR electrocatalysis on G/Pd0.5Mn0.5Ox.

  19. Successful personalized chemotherapy for metastatic gastric cancer based on quantitative BRCA1 mRNA expression level: A case report

    PubMed Central

    HUANG, YING; WU, PUYUAN; LIU, BAORUI; DU, JUAN

    2016-01-01

    Personalized chemotherapy is based on the specific genetic profile of individual patients and is replacing the traditional ‘one size fits all’ medicine. Breast cancer 1 (BRCA1) plays a central role in the chemotherapy-induced DNA damage response. It has been repeatedly demonstrated that BRCA1 mRNA levels were negatively associated with cisplatin sensitivity, but positively associated with docetaxel sensitivity in patients with gastric cancer in experimental and clinical studies. This feature leads to customized chemotherapy based on the BRCA1 mRNA expression level and results in a high efficacy of treatment. The present study describes the case of a 77-year-old patient with metastatic gastric cancer who was treated with personalized chemotherapy based on quantitative BRCA1 mRNA expression level. This study and the available literature data suggest that the expression level of BRCA1 mRNA is dynamic to BRCA1-based chemotherapy. More importantly, de novo assessment of BRCA1 status is a preferable option for ciscisplatin- or docetaxel-resistant patients, since the expression levels of BRCA1 mRNA in certain patients may alter significantly following treatment. Therefore, BRCA1 expression should be assessed for predicting differential chemosensitivity and tailoring chemotherapy in gastric cancer. PMID:27313763

  20. Standardization of CPUE for Chilean jack mackerel ( Trachurus murphyi) from Chinese trawl fleets in the high seas of the Southeast Pacific Ocean

    NASA Astrophysics Data System (ADS)

    Li, Gang; Zou, Xiaorong; Chen, Xinjun; Zhou, Yinqi; Zhang, Min

    2013-09-01

    The generalized linear model (GLM) and generalized additive model (GAM) were applied to the standardization of catch per unit effort (CPUE) for Chilean jack mackerel from Chinese factory trawl fishing fleets in the Southeast Pacific Ocean from 2001 to 2010 by removing the operational, environmental, spatial and temporal impacts. A total of 9 factors were selected to build the GLM and GAM, i.e., Year, Month, Vessel, La Niña and El Niño events (ELE), Latitude, Longitude, Sea surface temperature (SST), SST anomaly (SSTA), Nino3.4 index and an interaction term between Longitude and Latitude. The first 5 factors were significant components in the GLM, which in combination explained 27.34% of the total variance in nominal CPUE. In the stepwise GAM, all factors explained 30.78% of the total variance, with Month, Year and Vessel as the main factors influencing CPUE. The higher CPUE occurred during the period April to July at a SST range of 12-15°C and a SSTA range of 0.2-1.0°C. The CPUE was significantly higher in normal years compared with that in La Niña and El Niño years. The abundance of Chilean jack mackerel declined during 2001 and 2010, with an increase in 2007. This work provided the relative abundance index of Chilean jack mackerel for stock assessment by standardizing catch and effort data of Chinese trawl fisheries and examined the influence of temporal, spatial, environmental and fisheries operational factors on Chilean jack mackerel CPUE.

  1. Disruption of endogenous regulator homeostasis underlies the mechanism of rat CYP1A1 mRNA induction by metyrapone.

    PubMed Central

    Harvey, J L; Paine, A J; Wright, M C

    1998-01-01

    The transcriptional induction of the cytochrome P-450 1A1 (CYP1A1) gene by xenobiotics such as polyaromatic hydrocarbons is dependent on their interaction with the aryl hydrocarbon receptor. Administration of the structurally unrelated compounds metyrapone (a cytochrome P-450 inhibitor) or dexamethasone (a glucocorticoid) to male rats does not induce hepatic CYP1A1 mRNA. However, administration of both metyrapone and dexamethasone to male rats results in the induction of hepatic CYP1A1 mRNA expression. The induction response is mimicked in vitro in cultured rat hepatocytes by the addition of metyrapone and dexamethasone to a serum-free culture medium, suggesting that these compounds act directly on the liver in vivo to effect hepatic CYP1A1 mRNA induction. An examination of the characteristics of CYP1A1 induction by metyrapone and dexamethasone in combination in vitro indicate that at least 6 h of treatment is required for detectable levels of CYP1A1 mRNA to accumulate in hepatocytes. In contrast, beta-naphthoflavone, which is known to bind to the aryl hydrocarbon receptor to effect CYP1A1 gene expression, induces detectable levels of CYP1A1 mRNA within 2 h of treatment. CYP1A1 mRNA is also induced when hepatocytes are treated with metyrapone in combination with the protein synthesis inhibitor cycloheximide but not with dexamethasone in combination with cycloheximide, indicating that CYP1A1 mRNA induction is strictly dependent on the presence of metyrapone and suggesting that the metyrapone-associated induction of CYP1A1 mRNA is dependent on a loss of a constitutively expressed protein that functions to suppress CYP1A1 gene expression. The role of dexamethasone in metyrapone-associated induction of CYP1A1 is probably mediated through the glucocorticoid receptor since the glucocorticoid receptor antagonist RU486 reduces the levels of CYP1A1 mRNA induced by metyrapone and dexamethasone in combination. Increasing the levels of the photosensitizer riboflavin present in

  2. Antenna Beam Coverage Concepts

    NASA Technical Reports Server (NTRS)

    Estabrook, Polly; Motamedi, Masoud

    1990-01-01

    The strawman Personal Access Satellite System (PASS) design calls for the use of a CONUS beam for transmission between the supplier and the satellite and for fixed beams for transmission between the basic personal terminal and the satellite. The satellite uses a 3 m main reflector for transmission at 20 GHz and a 2 m main reflector for reception at 30 GHz. There are several types of spot beams under consideration for the PASS system besides fixed beams. The beam pattern of a CONUS coverage switched beam is shown along with that of a scanning beam. A switched beam refers to one in which the signal from the satellite is connected alternatively to various feed horns. Scanning beams are taken to mean beams whose footprints are moved between contiguous regions in the beam's coverage area. The advantages and disadvantages of switched and/or scanning beams relative to fixed beams. The consequences of using switched/scanning in lieu of fixed beams in the PASS design and attempts are made to evaluate the listed advantages and disadvantages. Two uses of switched/scanning beams are examined. To illustrate the implications of switched beams use on PASS system design, operation at two beam scan rates is explored.

  3. The Prognostic Value of BRCA1 mRNA Expression Levels Following Neoadjuvant Chemotherapy in Breast Cancer

    PubMed Central

    Margeli, Mireia; Cirauqui, Beatriz; Castella, Eva; Tapia, Gustavo; Costa, Carlota; Gimenez-Capitan, Ana; Barnadas, Agusti; Ronco, Maria Sanchez; Benlloch, Susana; Taron, Miquel; Rosell, Rafael

    2010-01-01

    Background A fraction of sporadic breast cancers has low BRCA1 expression. BRCA1 mutation carriers are more likely to achieve a pathological complete response with DNA-damage-based chemotherapy compared to non-mutation carriers. Furthermore, sporadic ovarian cancer patients with low levels of BRCA1 mRNA have longer survival following platinum-based chemotherapy than patients with high levels of BRCA1 mRNA. Methodology/Principal Findings Tumor biopsies were obtained from 86 breast cancer patients who were candidates for neoadjuvant chemotherapy, treated with four cycles of neoadjuvant fluorouracil, epirubicin and cyclophosphamide. Estrogen receptor (ER), progesterone receptor (PR), HER2, cytokeratin 5/6 and vimentin were examined by tissue microarray. HER2 were also assessed by chromogenic in situ hybridization, and BRCA1 mRNA was analyzed in a subset of 41 patients for whom sufficient tumor tissue was available by real-time quantitative PCR. Median time to progression was 42 months and overall survival was 55 months. In the multivariate analysis for time to progression and overall survival for 41 patients in whom BRCA1 could be assessed, low levels of BRCA1 mRNA, positive PR and negative lymph node involvement predicted a significantly lower risk of relapse, low levels of BRCA1 mRNA and positive PR were the only variables associated with significantly longer survival. Conclusions/Significance We provide evidence for a major role for BRCA1 mRNA expression as a marker of time to progression and overall survival in sporadic breast cancers treated with anthracycline-based chemotherapy. These findings can be useful for customizing chemotherapy. PMID:20209131

  4. [Expression optimization and characterization of Tenebrio molitor antimicrobiol peptides TmAMP1m in Escherichia coli].

    PubMed

    Alimu, Reyihanguli; Mao, Xinfang; Liu, Zhongyuan

    2013-06-01

    To improve the expression level of tmAMP1m gene from Tenebrio molitor in Escherichia coli, we studied the effects of expression level and activity of the fusion protein HIS-TmAMP1m by conditions, such as culture temperature, inducing time and the final concentration of inductor Isopropyl beta-D-thiogalactopyranoside (IPTG). We analyzed the optimum expression conditions by Tricine-SDS-PAGE electrophoresis, meanwhile, detected its antibacterial activity by using agarose cavity diffusion method. The results suggest that when inducing the recombinant plasmid with a final IPTG concentration of 0.1 mmol/L at 37 degrees C for 4 h, there was the highest expression level of fusion protein HIS-TmAMP1m in Escherichia coli. Under these conditions, the expression of fusion protein accounted for 40% of the total cell lysate with the best antibacterial activity. We purified the fusion protein HIS-TmAMPlm with nickel-nitrilotriacetic acid (Ni-NTA) metal-affinity chromatography matrices. Western blotting analysis indicates that the His monoclonal antibody could be specifically bound to fusion protein HIS-TmAMPlm. After expression by inducing, the fusion protein could inhibit the growth of host cell transformed by pET30a-tmAMP1m. The fusion protein HIS-TmAMP1m had better stability and remained higher antibacterial activities when incubated at 100 degrees C for 10 h, repeated freeze thawing at -20 degrees C, dissolved in strong acid and alkali, or treated by organic solvents and protease. Moreover, the minimum inhibitory concentration results demonstrated that the fusion protein HIS-TmAMP1m has a good antibacterial activity against Staphylococcus aureus, Staphylococcus sp., Corynebacterium glutamicum, Bacillus thuringiensis, Corynebacterium sp. This study laid the foundation to promote the application of insect antimicrobial peptides and further research. PMID:24063242

  5. Telecommunication using muon beams

    DOEpatents

    Arnold, Richard C.

    1976-01-01

    Telecommunication is effected by generating a beam of mu mesons or muons, varying a property of the beam at a modulating rate to generate a modulated beam of muons, and detecting the information in the modulated beam at a remote location.

  6. Food restriction during lactation suppresses Kiss1 mRNA expression and kisspeptin-stimulated LH release in rats.

    PubMed

    Ladyman, Sharon R; Woodside, Barbara

    2014-05-01

    Among the numerous physiological changes that accompany lactation is the suppression of the reproductive axis. The aim of this study was to investigate a possible role for the kisspeptin system in the restoration of the hypothalamic-pituitary-gonadal axis during late lactation in rats using a food restriction model that allows manipulation of the duration of lactational anovulation. Kiss1 mRNA expression and kisspeptin-immunoreactive cell counts were examined in both food-restricted dams and ad libitum (AL)-fed dams across late lactation when LH concentrations begin to increase. In the arcuate nucleus, Kiss1 mRNA expression and kisspeptin-positive cell counts were suppressed during late lactation. In the anteroventral periventricular (AVPV), day 15 food-restricted dams had significantly lower AVPV Kiss1 mRNA expression and a decreased LH response to exogenous kisspeptin compared with the AL-fed dams. Following 5 days of ad libitum food intake, these values were restored to levels similar to those in dams that had been fed ad libitum throughout lactation. In conclusion, this study shows that delayed restoration of the reproductive axis due to food restriction is associated with a decrease in kisspeptin sensitivity and low AVPV Kiss1 mRNA in late lactation.

  7. Human Anti-Oxidation Protein A1M--A Potential Kidney Protection Agent in Peptide Receptor Radionuclide Therapy.

    PubMed

    Ahlstedt, Jonas; Tran, Thuy A; Strand, Sven-Erik; Gram, Magnus; Åkerström, Bo

    2015-12-18

    Peptide receptor radionuclide therapy (PRRT) has been in clinical use for 15 years to treat metastatic neuroendocrine tumors. PRRT is limited by reabsorption and retention of the administered radiolabeled somatostatin analogues in the proximal tubule. Consequently, it is essential to develop and employ methods to protect the kidneys during PRRT. Today, infusion of positively charged amino acids is the standard method of kidney protection. Other methods, such as administration of amifostine, are still under evaluation and show promising results. α₁-microglobulin (A1M) is a reductase and radical scavenging protein ubiquitously present in plasma and extravascular tissue. Human A1M has antioxidation properties and has been shown to prevent radiation-induced in vitro cell damage and protect non-irradiated surrounding cells. It has recently been shown in mice that exogenously infused A1M and the somatostatin analogue octreotide are co-localized in proximal tubules of the kidney after intravenous infusion. In this review we describe the current situation of kidney protection during PRRT, discuss the necessity and implications of more precise dosimetry and present A1M as a new, potential candidate for renal protection during PRRT and related targeted radionuclide therapies.

  8. Elastin-Derived Peptides Promote Abdominal Aortic Aneurysm Formation by Modulating M1/M2 Macrophage Polarization.

    PubMed

    Dale, Matthew A; Xiong, Wanfen; Carson, Jeffrey S; Suh, Melissa K; Karpisek, Andrew D; Meisinger, Trevor M; Casale, George P; Baxter, B Timothy

    2016-06-01

    Abdominal aortic aneurysm is a dynamic vascular disease characterized by inflammatory cell invasion and extracellular matrix degradation. Damage to elastin in the extracellular matrix results in release of elastin-derived peptides (EDPs), which are chemotactic for inflammatory cells such as monocytes. Their effect on macrophage polarization is less well known. Proinflammatory M1 macrophages initially are recruited to sites of injury, but, if their effects are prolonged, they can lead to chronic inflammation that prevents normal tissue repair. Conversely, anti-inflammatory M2 macrophages reduce inflammation and aid in wound healing. Thus, a proper M1/M2 ratio is vital for tissue homeostasis. Abdominal aortic aneurysm tissue reveals a high M1/M2 ratio in which proinflammatory cells and their associated markers dominate. In the current study, in vitro treatment of bone marrow-derived macrophages with EDPs induced M1 macrophage polarization. By using C57BL/6 mice, Ab-mediated neutralization of EDPs reduced aortic dilation, matrix metalloproteinase activity, and proinflammatory cytokine expression at early and late time points after aneurysm induction. Furthermore, direct manipulation of the M1/M2 balance altered aortic dilation. Injection of M2-polarized macrophages reduced aortic dilation after aneurysm induction. EDPs promoted a proinflammatory environment in aortic tissue by inducing M1 polarization, and neutralization of EDPs attenuated aortic dilation. The M1/M2 imbalance is vital to aneurysm formation. PMID:27183603

  9. Effect of electrolyte water content on the anodic passivation of lithium in 1m lic104-propylene carbonate

    SciTech Connect

    James, S.D.; Nagao, A.R.

    1982-06-01

    This work deals with the effect of aqueous contamination on the anode passivation of Li in 1M LiC10/sup 4/-propylene carbonate. Passivation occurs more readily with increasing electrolyte water content. Preliminary evidence suggests that anodic passivation may be due to anodic enrichment and eventual precipitation of LiC10/sup 4/ in the superficial anolyte layer.

  10. Characterization of Trp-1 mRNA Levels in Dominant and Recessive Mutations at the Mouse Brown (B) Locus

    PubMed Central

    Jackson, I. J.; Chambers, D.; Rinchik, E. M.; Bennett, D. C.

    1990-01-01

    The mouse brown locus encodes a putative membrane-bound metalloenzyme, tyrosinase-related protein-1 (TRP-1). We have examined the effect on mRNA expression of the locus of a number of mutant alleles. The common null mutant allele, brown, produces wild-type levels of TRP-1 mRNA, which is nonfunctional. Another recessive allele, cordovan-Harwell, has an intermediate, dark-brown phenotype and produces only very low levels of presumably normal TRP-1 mRNA. Two dominant alleles appear to act by killing the melanocyte in which they are expressed. One of them, Light, has normal size and amounts of TRP-1 mRNA. The other, White-based brown, produces no detectable TRP-1 mRNA. It has a gross DNA rearrangement at the 5' end, and we speculate that this results in activation of transcription of sequences not usually seen in melanocytes, and that this is toxic to the cell. The relationship between phenotype and molecular structure at the locus is discussed, and we draw some general principles applicable to other developmental genes. PMID:2245917

  11. Parabolic scaling beams.

    PubMed

    Gao, Nan; Xie, Changqing

    2014-06-15

    We generalize the concept of diffraction free beams to parabolic scaling beams (PSBs), whose normalized intensity scales parabolically during propagation. These beams are nondiffracting in the circular parabolic coordinate systems, and all the diffraction free beams of Durnin's type have counterparts as PSBs. Parabolic scaling Bessel beams with Gaussian apodization are investigated in detail, their nonparaxial extrapolations are derived, and experimental results agree well with theoretical predictions.

  12. Automated beam builder

    NASA Technical Reports Server (NTRS)

    Muench, W. K.

    1980-01-01

    Requirements for the space fabrication of large space structures are considered with emphasis on the design, development, manufacture, and testing of a machine which automatically produces a basic building block aluminum beam. Particular problems discussed include those associated with beam cap forming; brace storage, dispensing, and transporting; beam component fastening; and beam cut-off. Various critical process tests conducted to develop technology for a machine to produce composite beams are also discussed.

  13. SUMMARY OF BEAM BEAM OBSERVATIONS DURING STORES IN RHIC.

    SciTech Connect

    FISCHER,W.

    2003-05-19

    During stores, the beam-beam interaction has a significant impact on the beam and luminosity lifetimes in RHIC. This was observed in heavy ion, and even more pronounced in proton collisions. Observations include measurements of beam-beam induced tune shifts, lifetime and emittance growth measurements with and without beam-beam interaction, and background rates as a function of tunes. In addition, RHIC is currently the only hadron collider in which strong-strong beam-beam effects can be seen. Coherent beam-beam modes were observed, and suppressed by tune changes. In this article we summarize the most important beam-beam observations made during stores so far.

  14. Distribution of glutamate transporter 1 mRNA in the central nervous system of the pigeon (Columba livia).

    PubMed

    Atoji, Yasuro; Islam, Mohammad Rafiqul

    2009-07-01

    Glutamate transporter 1 (GLT1) in glial cells removes glutamate that diffuses from the synaptic cleft into the extracellular space. Previously, we have shown the distribution of glutamatergic neurons in the central nervous system (CNS) of the pigeon. In the present study, we identified cDNA sequence of the pigeon GLT1, and mapped the distribution of the mRNA-expressing cells in CNS to examine whether GLT1 is associated with glutamatergic terminal areas. The cDNA sequence of the pigeon GLT1 consisted of 1889bp nucleotides and the amino acids showed 97% and 87% identity to the chicken and human GLT1, respectively. In situ hybridization autoradiograms revealed GLT1 mRNA expression in glial cells and produced regional differences of GLT1 mRNA distribution in CNS. GLT1 mRNA was expressed preferentially in the pallium than the subpallium. Moderate expression was seen in the hyperpallium, Field L, mesopallium, and hippocampal formation. In the thalamus, moderate expression was found in the ovoidal nucleus, rotundal nucleus, triangular nucleus, and lateral spiriform nucleus, while the dorsal thalamic nuclei were weak. In the brainstem, the isthmic nuclei, optic tectum, vestibular nuclei, and cochlear nuclei expressed moderately, but the cerebellar cortex showed strong expression. Bergmann glial cells expressed GLT1 mRNA very strongly. The results indicate that cDNA sequence of the pigeon GLT1 is comparable with that of the mammalian GLT1, and a large number of GLT1 mRNA-expressing areas correspond with areas where AMPA-type glutamate receptors are located. Avian GLT1 in glial cells probably maintain microenvironment of glutamate concentration around synapses as in mammalian GLT1.

  15. Splicing of influenza A virus NS1 mRNA is independent of the viral NS1 protein.

    PubMed

    Robb, Nicole C; Jackson, David; Vreede, Frank T; Fodor, Ervin

    2010-09-01

    RNA segment 8 (NS) of influenza A virus encodes two proteins. The NS1 protein is translated from the unspliced primary mRNA transcript, whereas the second protein encoded by this segment, NS2/NEP, is translated from a spliced mRNA. Splicing of influenza NS1 mRNA is thought to be regulated so that the levels of NS2 spliced transcripts are approximately 10 % of total NS mRNA. Regulation of splicing of the NS1 mRNA has been studied at length, and a number of often-contradictory control mechanisms have been proposed. In this study, we used (32)P-labelled gene-specific primers to investigate influenza A NS1 mRNA splicing regulation. It was found that the efficiency of splicing of NS1 mRNA was maintained at similar levels in both virus infection and ribonucleoprotein-reconstitution assays, and NS2 mRNA comprised approximately 15 % of total NS mRNA in both assays. The effect of NS1 protein expression on the accumulation of viral NS2 mRNA and spliced cellular beta-globin mRNA was analysed, and it was found that NS1 protein expression reduced spliced beta-globin mRNA levels, but had no effect on the accumulation of NS2 mRNA. We conclude that the NS1 protein specifically inhibits the accumulation of cellular RNA polymerase II-driven mRNAs, but does not affect the splicing of its own viral NS1 mRNA.

  16. Collective and noncollective states in {sup 116}Cd studied via the {beta} decays of {sup 116}Ag{sup m1,m2,gs}

    SciTech Connect

    Batchelder, J. C.; Carter, H. K.; Spejewski, E. H.; Garrett, P. E.; Green, K. L.; Rykaczewski, K. P.; Bilheux, J.-C.; Stracener, D. W.; Bingham, C. R.; Fong, D.; Hamilton, J. H.; Hwang, J. K.; Ramayya, A. V.; Grzywacz, R.; Larochelle, Y.; Tantawy, M. N.; Hartley, D. J.; Krolas, W.

    2009-11-15

    We have reinvestigated the {beta} decay of the three isomers of {sup 116}Ag at the Holifield Radioactive Ion Beam Facility (HRIBF). Through the use of half-life information, we have been able to construct individual decay schemes for each isomer and correct what was a puzzling inconsistency with the published data, namely the {beta} feeding of 2{sup +} states by a 5{sup +} isomer. Our results indicate that the feeding of these levels arises from a 3{sup +} isomer in {sup 116}Ag. A total of 271{gamma}-ray transitions (159 new) were assigned to 148 levels (94 new) from the {beta} decay of {sup 116}Ag{sup m1,m2,gs}. Significant deviations are observed from IBM-2 calculations for the decay of the 0{sup +} and 2{sup +} members of the previously assigned three-phonon quintuplet. Candidate states for the quadrupole-octupole quintuplet states and {pi}g{sub 9/2}-{pi}p{sub 1/2}, {pi}g{sub 9/2}-{pi}p{sub 3/2}, {nu}h{sub 11/2}-{nu}s{sub 1/2}, {nu}h{sub 11/2}-{nu}d{sub 3/2}, and {nu}h{sub 11/2}-{nu}d{sub 5/2} broken-pair states are assigned.

  17. Tevatron beam-beam compensation project progress

    SciTech Connect

    Shiltsev, V.; Zhang, X.L.; Kuznetsov, G.; Pfeffer, H.; Saewert, G.; Zimmermann, F.; Tiunov, M.; Bishofberger, K.; Bogdanov, I.; Kashtanov, E.; Kozub, S.; Sytnik, V.; Tkachenko, L.; /Serpukhov, IHEP

    2005-05-01

    In this paper, we report the progress of the Tevatron Beam-Beam Compensation (BBC) project [1]. Electron beam induced proton and antiproton tuneshifts have been reported in [2], suppression of an antiproton emittance growth has been observed, too [1]. Currently, the first electron lens (TEL1) is in operational use as the Tevatron DC beam cleaner. We have made a lot of the upgrades to improve its stability [3]. The 2nd Tevatron electron lens (TEL2) is under the final phase of development and preparation for installation in the Tevatron.

  18. ION BEAM COLLIMATOR

    DOEpatents

    Langsdorf, A.S. Jr.

    1957-11-26

    A device is described for defining a beam of high energy particles wherein the means for defining the beam in the horizontal and vertical dimension are separately adjustable and the defining members are internally cooled. In general, the device comprises a mounting block having a central opening through which the beam is projected, means for rotatably supporting two pairs of beam- forming members, passages in each member for the flow of coolant; the beam- forming members being insulated from each other and the block, and each having an end projecting into the opening. The beam-forming members are adjustable and may be cooperatively positioned to define the beam passing between the end of the members. To assist in projecting and defining the beam, the member ends have individual means connected thereto for indicating the amount of charge collected thereon due to beam interception.

  19. RELATIONSHIPS BETWEEN HABITAT ARRANGEMENT AND JUVENILE WINTER FLOUNDER DENSITY IN NARRAGANSETT BAY

    EPA Science Inventory

    We used aerial photography in conjunction with a 1-m beam trawl attached to a videocamera with GPS overwrite and a YSI water quality logger to quantify fish densities and characterize habitats in Narragansett Bay and in Rhode Island's coastal lagoons. We compared fish counts fro...

  20. RELATIONSHIPS BETWEEN JUVENILE WINTER FLOUNDER AND MULTIPLE-SCALE HABITAT VARIATION IN NARRAGANSETT BAY, RHODE ISLAND

    EPA Science Inventory

    A rapid random-sampling method was used to relate densities of juvenile winter flounder to multiple scales of habitat variation in Narragansett Bay and two nearby coastal lagoons in Rhode Island. We used a 1-m beam trawl with attached video camera, continuous GPS track overlay, ...

  1. RELATIONSHIPS BETWEEN HABITAT QUALITY AND DENSITY OF JUVENILE WINTER FLOUNDER

    EPA Science Inventory

    We used a digital video camera mounted to a 1-m beam trawl together with an attached continuous recording YSI sonde and GPS unit to quantify juvenile winter flounder (Pseudopleuronectes americanus) densities and fish habitat. The YSI sonde measured temperature, salinity, dissolve...

  2. USE OF VIDEO TO ACCESS JUVENILE WINTER FLOUNDER DENSITIES AND HABITATS

    EPA Science Inventory

    We used a digital video camera mounted to a 1-m beam trawl together with an attached continuous recording YSI sonde and a GPS unit to quantify juvenile winter flounder (Pseudopleuronectes americanus) densities and fish habitat in Narragansett Bay, RI. The YSI sonde measured te...

  3. Beam position monitor

    DOEpatents

    Alkire, Randy W.; Rosenbaum, Gerold; Evans, Gwyndaf

    2003-07-22

    An apparatus for determining the position of an x-ray beam relative to a desired beam axis. Where the apparatus is positioned along the beam path so that a thin metal foil target intersects the x-ray beam generating fluorescent radiation. A PIN diode array is positioned so that a portion of the fluorescent radiation is intercepted by the array resulting in an a series of electrical signals from the PIN diodes making up the array. The signals are then analyzed and the position of the x-ray beam is determined relative to the desired beam path.

  4. Pyramid beam splitter

    DOEpatents

    McKeown, Mark H.; Beason, Steven C.; Fairer, George

    1992-01-01

    The apparatus of the present invention provides means for obtaining accurate, dependable, measurement of bearings and directions for geologic mapping in subterranean shafts, such as, for example, nuclear waste storage investigations. In operation, a laser beam is projected along a reference bearing. A pyramid is mounted such that the laser beam is parallel to the pyramid axis and can impinge on the apex of the pyramid thus splitting the beam several ways into several beams at right angles to each other and at right angles to the reference beam. The pyramid is also translatable and rotatable in a plane perpendicular to the reference beam.

  5. Electron diffraction study of 1M illites with interstratified trans- and cis-vacant 2 : 1 layers

    SciTech Connect

    Zhukhlistov, A. P. Vikent'ev, I. V.; Rusinova, O. V.

    2012-03-15

    Illites from the volcanogenic Zn-Au-Ag sulfide deposit Galkinskoe (Northern Urals) have been investigated using oblique-texture electron diffraction patterns in combination with the simulation of diffraction effects. Along with single-phase tv/cv1M illites, the structures of which are formed by statistically interstratified dioctahedral 2: 1 layers with vacant trans- or cis-octahedra, illites in the form of a mixture of two interstratified tv/cv1M phases, with the dominance of tv- or cv layers, are identified. It is shown that in the latter case the diffraction pattern can also be interpreted within the single-phase tv/cv model, provided that the tv- and cv layers are distributed with some tendency to segregate. The structural features indicating the preference of the two-phase model are analyzed.

  6. Differential Gene-Expression of Metallothionein 1M and 1G in Response to Zinc in Sertoli TM4 Cells

    PubMed Central

    Kheradmand, Fatemeh; Nourmohammadi, Issa; Modarressi, Mohammad Hossein; Firoozrai, Mohsen; Ahmadi Faghih, Mohammad Amin

    2010-01-01

    Background: Zinc (Zn) as an important trace element is essential for testicular development and spermatogenesis. Molecular mechanism of Zn action in the reproductive system may be related to metal binding low-molecular weight proteins, metallothioneins (MT). Our objective was to determine the effect of Zn on two important isoforms of MT, MT1M and MT1G genes expression on testicular sertoli cells. Methods: Cultured sertoli TM4 cells were exposed to different concentrations of Zn at different time points. Cellular uptake of Zn was tested using flame atomic absorption spectrometry. The cellular viability and gene expression were assessed by MTT and real-time PCR methods, respectively. Results: The treated cells resulted in higher Zn concentration and cellular viability. The expression of MT1M and MT1G genes in the treated cells were greater than those of the untreated cells (P<0.05). In the high dosage treated group (100 and 500 μM), Zn concentration and expression of MT1M and MT1G genes increased three h after treatment; MT1G gene expression increased more at sixth h. At 18th h of treatment, the expression of both genes especially MT1G, increased dramatically while Zn concentration decreased. Conclusion: Since the increase of MT1G mRNA was coincident with cellular Zn level, it seems that MT1G has a more prominent role than MT1M in the homeostasis of Zn. In addition, Zn at dosage of 50 μM (pharmacologic concentration) may protect cells by increasing the expression of MT genes at longer periods. PMID:20683493

  7. MiR-506 suppresses liver cancer angiogenesis through targeting sphingosine kinase 1 (SPHK1) mRNA.

    PubMed

    Lu, Zhanping; Zhang, Weiying; Gao, Shan; Jiang, Qiulei; Xiao, Zelin; Ye, Lihong; Zhang, Xiaodong

    MicroRNAs acting as oncogenes or tumor suppressor genes play crucial roles in human cancers. Sphingosine kinase 1 (SPHK1) and its metabolite sphingosine 1-phosphate (S1P) contribute to tumor angiogenesis. We have reported that the down-regulation of miR-506 targeting YAP mRNA results in the hepatocarcinogenesis. In the present study, we report a novel function of miR-506, which suppresses tumor angiogenesis through targeting SPHK1 mRNA in liver cancer. Bioinformatics analysis showed that miR-506 might target 3'-untranslated region (3'UTR) of SPHK1 mRNA. Then, we validated that by luciferase reporter gene assays. MiR-506 was able to reduce the expression of SPHK1 at the levels of mRNA and protein using reverse transcription-polymerase chain reaction and Western blot analysis in hepatoma HepG2 cells. Functionally, human umbilical vein endothelial cell (HUVEC) tube formation assays demonstrated that the forced miR-506 expression remarkably inhibited the production of S1P in the supernatant of hepatoma cells. The supernatant resulted in the inhibition of tumor angiogenesis. Interestingly, the supernatant with overexpression of SPHK1 could rescue the inhibition of angiogenesis of liver cancer mediated by miR-506. Anti-miR-506 increased the production of S1P in the supernatant of hepatoma cells, but the supernatant with silencing of SPHK1 abolished anti-miR-506-induced acceleration of tumor angiogenesis. Clinically, we observed that the levels of miR-506 were negatively related to those of SPHK1 mRNA in liver cancer tissues. Thus, we conclude that miR-506 depresses the angiogenesis of liver cancer through targeting 3'UTR of SPHK1 mRNA. Our finding provides new insights into the mechanism of tumor angiogenesis.

  8. Ligand binding properties of muscarinic acetylcholine receptor subtypes (m1-m5) expressed in baculovirus-infected insect cells.

    PubMed

    Dong, G Z; Kameyama, K; Rinken, A; Haga, T

    1995-07-01

    Five subtypes of muscarinic acetylcholine receptors (m1-m5) have been expressed in insect cells (Spodoptera frugiperda, Sf9) using the baculovirus system. Up to 6 nmol of muscarinic acetylcholine receptors were produced by 1 liter culture; 0.3 to 0.6 (human m1), 3 to 6 (human m2), 2 to 4 (rat m3), 1 to 2 (rat m4) and 0.5 to 1 (human m5) nmol. Pirenzepine, AF-DX116 and hexahidrosiladifenidol showed the highest affinity for the m1, m2 and m3 subtype, respectively, indicating that these receptors expressed in Sf9 cells retain the same substrate specificity as those in mammalian tissues or cultured cells. Among 32 kinds of muscarinic ligands examined in the present studies, prifinium was found to have the highest affinity for the m4 subtype, and pilocarpine, oxotremorine, McN-A343 and promethazine the highest affinity for the m5 subtype, although the differences in the affinities among the five subtypes were less than 10-fold. Alcuronium increased the binding of [3H]N-methylscopalamine to the m2 subtype, but not the m1, m4 and m5 subtypes and only slightly to the m3 subtype. Similar but smaller effects of fangchinoline and tetrandrine were found for [3H]N-methylscopalamine binding to only the m3 subtype. These effects may also be useful for the discrimination of individual subtypes. PMID:7616422

  9. IRF1 Downregulation by Ras/MEK Is Independent of Translational Control of IRF1 mRNA.

    PubMed

    Komatsu, Yumiko; Derwish, Leena; Hirasawa, Kensuke

    2016-01-01

    Oncogenic activation of Ras/MEK downregulates the expression of interferon regulatory factor 1 (IRF1), which is a prerequisite for oncolytic viruses to replicate in cancer cells [1]. Moreover, restoration of IRF1 expression is essential to induce apoptosis of cancer cells treated with a MEK inhibitor [2]. However, the molecular mechanisms that underlie IRF1 downregulation by Ras/MEK remain unclear. In this study, we determined whether Ras/MEK activation modulates IRF1 expression at its translational level. MEK inhibition increased the activity of IRF1 promoter construct in Ras transformed NIH3T3 cells and wild type MEF, but not in IRF1 deficient MEF, indicating that IRF1 protein is required for the transcriptional activation of IRF1. By conducting reporter analysis using IRF1 5'- and 3'- UTR constructs, we determined that cis elements on 5'- and 3'-UTR of IRF1 mRNA are not involved in the IRF1 regulation by Ras/MEK. We further compared the recruitment of ribosomes to IRF1 mRNA in RasV12 cells treated with or without the MEK inhibitor by conducting polysome analysis. No difference was observed in the polysomal distribution of IRF1 mRNA between RasV12 cells treated with and without the MEK inhibitor. These results suggest that regulation of IRF1 translation is independent of IRF1 downregulation by Ras/MEK. PMID:27508303

  10. Activated carbon and single-walled carbon nanotube based electrochemical capacitor in 1 M LiPF{sub 6} electrolyte

    SciTech Connect

    Azam, M.A.; Jantan, N.H.; Dorah, N.; Seman, R.N.A.R.; Manaf, N.S.A.; Kudin, T.I.T.; Yahya, M.Z.A.

    2015-09-15

    Highlights: • Activated carbon and single-walled CNT based electrochemical capacitor. • Electrochemical analysis by means of CV, charge/discharge and impedance. • 1 M LiPF{sub 6} non-aqueous solution as an electrolyte. • AC/SWCNT electrode exhibits a maximum capacitance of 60.97 F g{sup −1}. - Abstract: Carbon nanotubes have been extensively studied because of their wide range of potential application such as in nanoscale electric circuits, textiles, transportation, health, and the environment. Carbon nanotubes feature extraordinary properties, such as electrical conductivities higher than those of copper, hardness and thermal conductivity higher than those of diamond, and strength surpassing that of steel, among others. This research focuses on the fabrication of an energy storage device, namely, an electrochemical capacitor, by using carbon materials, i.e., activated carbon and single-walled carbon nanotubes, of a specific weight ratio as electrode materials. The electrolyte functioning as an ion carrier is 1 M lithium hexafluorophosphate. Variations in the electrochemical performance of the device, including its capacitance, charge/discharge characteristics, and impedance, are reported in this paper. The electrode proposed in this work exhibits a maximum capacitance of 60.97 F g{sup −1} at a scan rate of 1 mV s{sup −1}.

  11. Localising the auditory N1m with event-related beamformers: localisation accuracy following bilateral and unilateral stimulation

    PubMed Central

    Gascoyne, Lauren; Furlong, Paul L.; Hillebrand, Arjan; Worthen, Siân F.; Witton, Caroline

    2016-01-01

    The auditory evoked N1m-P2m response complex presents a challenging case for MEG source-modelling, because symmetrical, phase-locked activity occurs in the hemispheres both contralateral and ipsilateral to stimulation. Beamformer methods, in particular, can be susceptible to localisation bias and spurious sources under these conditions. This study explored the accuracy and efficiency of event-related beamformer source models for auditory MEG data under typical experimental conditions: monaural and diotic stimulation; and whole-head beamformer analysis compared to a half-head analysis using only sensors from the hemisphere contralateral to stimulation. Event-related beamformer localisations were also compared with more traditional single-dipole models. At the group level, the event-related beamformer performed equally well as the single-dipole models in terms of accuracy for both the N1m and the P2m, and in terms of efficiency (number of successful source models) for the N1m. The results yielded by the half-head analysis did not differ significantly from those produced by the traditional whole-head analysis. Any localisation bias caused by the presence of correlated sources is minimal in the context of the inter-individual variability in source localisations. In conclusion, event-related beamformers provide a useful alternative to equivalent-current dipole models in localisation of auditory evoked responses. PMID:27545435

  12. IRF1 Downregulation by Ras/MEK Is Independent of Translational Control of IRF1 mRNA

    PubMed Central

    Komatsu, Yumiko; Derwish, Leena

    2016-01-01

    Oncogenic activation of Ras/MEK downregulates the expression of interferon regulatory factor 1 (IRF1), which is a prerequisite for oncolytic viruses to replicate in cancer cells [1]. Moreover, restoration of IRF1 expression is essential to induce apoptosis of cancer cells treated with a MEK inhibitor [2]. However, the molecular mechanisms that underlie IRF1 downregulation by Ras/MEK remain unclear. In this study, we determined whether Ras/MEK activation modulates IRF1 expression at its translational level. MEK inhibition increased the activity of IRF1 promoter construct in Ras transformed NIH3T3 cells and wild type MEF, but not in IRF1 deficient MEF, indicating that IRF1 protein is required for the transcriptional activation of IRF1. By conducting reporter analysis using IRF1 5’- and 3’- UTR constructs, we determined that cis elements on 5’- and 3’-UTR of IRF1 mRNA are not involved in the IRF1 regulation by Ras/MEK. We further compared the recruitment of ribosomes to IRF1 mRNA in RasV12 cells treated with or without the MEK inhibitor by conducting polysome analysis. No difference was observed in the polysomal distribution of IRF1 mRNA between RasV12 cells treated with and without the MEK inhibitor. These results suggest that regulation of IRF1 translation is independent of IRF1 downregulation by Ras/MEK. PMID:27508303

  13. Localising the auditory N1m with event-related beamformers: localisation accuracy following bilateral and unilateral stimulation.

    PubMed

    Gascoyne, Lauren; Furlong, Paul L; Hillebrand, Arjan; Worthen, Siân F; Witton, Caroline

    2016-01-01

    The auditory evoked N1m-P2m response complex presents a challenging case for MEG source-modelling, because symmetrical, phase-locked activity occurs in the hemispheres both contralateral and ipsilateral to stimulation. Beamformer methods, in particular, can be susceptible to localisation bias and spurious sources under these conditions. This study explored the accuracy and efficiency of event-related beamformer source models for auditory MEG data under typical experimental conditions: monaural and diotic stimulation; and whole-head beamformer analysis compared to a half-head analysis using only sensors from the hemisphere contralateral to stimulation. Event-related beamformer localisations were also compared with more traditional single-dipole models. At the group level, the event-related beamformer performed equally well as the single-dipole models in terms of accuracy for both the N1m and the P2m, and in terms of efficiency (number of successful source models) for the N1m. The results yielded by the half-head analysis did not differ significantly from those produced by the traditional whole-head analysis. Any localisation bias caused by the presence of correlated sources is minimal in the context of the inter-individual variability in source localisations. In conclusion, event-related beamformers provide a useful alternative to equivalent-current dipole models in localisation of auditory evoked responses. PMID:27545435

  14. A novel mRNA 3' untranslated region translational control sequence regulates Xenopus Wee1 mRNA translation.

    PubMed

    Wang, Yi Ying; Charlesworth, Amanda; Byrd, Shannon M; Gregerson, Robert; MacNicol, Melanie C; MacNicol, Angus M

    2008-05-15

    Cell cycle progression during oocyte maturation requires the strict temporal regulation of maternal mRNA translation. The intrinsic basis of this temporal control has not been fully elucidated but appears to involve distinct mRNA 3' UTR regulatory elements. In this study, we identify a novel translational control sequence (TCS) that exerts repression of target mRNAs in immature oocytes of the frog, Xenopus laevis, and can direct early cytoplasmic polyadenylation and translational activation during oocyte maturation. The TCS is functionally distinct from the previously characterized Musashi/polyadenylation response element (PRE) and the cytoplasmic polyadenylation element (CPE). We report that TCS elements exert translational repression in both the Wee1 mRNA 3' UTR and the pericentriolar material-1 (Pcm-1) mRNA 3' UTR in immature oocytes. During oocyte maturation, TCS function directs the early translational activation of the Pcm-1 mRNA. By contrast, we demonstrate that CPE sequences flanking the TCS elements in the Wee1 3' UTR suppress the ability of the TCS to direct early translational activation. Our results indicate that a functional hierarchy exists between these distinct 3' UTR regulatory elements to control the timing of maternal mRNA translational activation during oocyte maturation.

  15. From Fishing to Fish Processing: Separation of Fish from Crustaceans in the Norway Lobster-Directed Multispecies Trawl Fishery Improves Seafood Quality

    PubMed Central

    Karlsen, Junita D.; Krag, Ludvig Ahm; Albertsen, Christoffer Moesgaard; Frandsen, Rikke Petri

    2015-01-01

    Fishing gears have negative impacts on seafood quality, especially on fish in the mixed trawl fishery targeting Norway lobster (Nephrops norvegicus). In this fishery, which is worth about €80 millions in Denmark alone, the quality of fish can be significantly improved by simple gear changes. A trawl codend divided into an upper and lower codend was designed to separate fish from Norway lobster during the fishing process by encourage fish to swim into the upper codend by using a frame at the entrance of the lower codend. Separate codends for fish and Norway lobster in the same gear provide the opportunity to selectively reduce small low-value fish, which will reduce catch weight and sorting time onboard the vessel. For this horizontally divided test codend and a standard codend, in which the catch was mixed, quality assessments were performed on the same batches of fish during three steps of the value chain: i) aboard the fishing vessel; ii) at the Fishermen’s Collection Central, and iii) in the production plant. Four species of fish and fillets from fish caught in the upper codend of the test codend were of significantly better quality for several of the assessed parameters compared with those caught in the standard codend: i) newly caught fish showed significantly less scale loss and discolourations and had significantly better texture; ii) landed fish had significantly better skin appearance and texture and significantly fewer discolourations; and iii) fillets showed significantly fewer blood spots and had significantly better texture. There were no differences in injuries for newly caught fish or gaping and bruises for fillets between the test and standard codends. The decrease in catch-related damages in the test codend is explained by little contact between fish and animals with hard or spiny surfaces due to successful separation of fish and Norway lobster into the upper and lower codends, respectively, and by lower catch weight in the upper codend of the

  16. From Fishing to Fish Processing: Separation of Fish from Crustaceans in the Norway Lobster-Directed Multispecies Trawl Fishery Improves Seafood Quality.

    PubMed

    Karlsen, Junita D; Krag, Ludvig Ahm; Albertsen, Christoffer Moesgaard; Frandsen, Rikke Petri

    2015-01-01

    Fishing gears have negative impacts on seafood quality, especially on fish in the mixed trawl fishery targeting Norway lobster (Nephrops norvegicus). In this fishery, which is worth about €80 millions in Denmark alone, the quality of fish can be significantly improved by simple gear changes. A trawl codend divided into an upper and lower codend was designed to separate fish from Norway lobster during the fishing process by encourage fish to swim into the upper codend by using a frame at the entrance of the lower codend. Separate codends for fish and Norway lobster in the same gear provide the opportunity to selectively reduce small low-value fish, which will reduce catch weight and sorting time onboard the vessel. For this horizontally divided test codend and a standard codend, in which the catch was mixed, quality assessments were performed on the same batches of fish during three steps of the value chain: i) aboard the fishing vessel; ii) at the Fishermen's Collection Central, and iii) in the production plant. Four species of fish and fillets from fish caught in the upper codend of the test codend were of significantly better quality for several of the assessed parameters compared with those caught in the standard codend: i) newly caught fish showed significantly less scale loss and discolourations and had significantly better texture; ii) landed fish had significantly better skin appearance and texture and significantly fewer discolourations; and iii) fillets showed significantly fewer blood spots and had significantly better texture. There were no differences in injuries for newly caught fish or gaping and bruises for fillets between the test and standard codends. The decrease in catch-related damages in the test codend is explained by little contact between fish and animals with hard or spiny surfaces due to successful separation of fish and Norway lobster into the upper and lower codends, respectively, and by lower catch weight in the upper codend of the

  17. Partitioning the contributions of mega-, macro- and meiofauna to benthic metabolism on the upper continental slope of New Zealand: Potential links with environmental factors and trawling intensity

    NASA Astrophysics Data System (ADS)

    Leduc, Daniel; Pilditch, Conrad A.; Nodder, Scott D.

    2016-02-01

    Understanding and predicting change in deep-sea benthic ecosystem function remains a major challenge. Here, we conducted analyses combining data on the abundance and biomass of benthic fauna and sediment community oxygen consumption (SCOC) on New Zealand's continental margin to estimate and compare the contributions of meio-, macro-, and megafauna to total benthic metabolism and identify potential links with environmental factors and trawling intensity. We focussed on two regions in close proximity-the high surface primary productivity Chatham Rise and low surface productivity Challenger Plateau. Mean megafauna biomass was twenty times greater on Chatham Rise than Challenger Plateau, likely reflecting differences in food supply between the two regions; this contrast in megafaunal biomass was mainly due to differences in mean body weight rather than abundance. Meio- and macrofauna made similar contributions to SCOC and together accounted for 12% of benthic metabolism on average. In contrast, the estimated contribution of megafauna never exceeded 1.5%. Significant positive correlations between faunal respiration and food availability indicate a link between food supply and benthic community function. Our analyses also show that fauna made a greater contribution to SCOC in conditions of high food availability, and that microorganisms (i.e., the proportion of SCOC not accounted for by the fauna) tended to be more dominant at sites with low food availability. These findings provide support for the concept that large organisms are more strongly affected by a reduction in food resources than small organisms, which in turn underlies one of the most widely described patterns in the deep-sea benthos, i.e., the reduction in organism body size with depth. Because metabolism in deep-sea sediments is typically dominated by microorganisms and small fauna, the absence of a relationship between bottom trawling intensity and the respiration of benthic fauna in the present study may

  18. From Fishing to Fish Processing: Separation of Fish from Crustaceans in the Norway Lobster-Directed Multispecies Trawl Fishery Improves Seafood Quality.

    PubMed

    Karlsen, Junita D; Krag, Ludvig Ahm; Albertsen, Christoffer Moesgaard; Frandsen, Rikke Petri

    2015-01-01

    Fishing gears have negative impacts on seafood quality, especially on fish in the mixed trawl fishery targeting Norway lobster (Nephrops norvegicus). In this fishery, which is worth about €80 millions in Denmark alone, the quality of fish can be significantly improved by simple gear changes. A trawl codend divided into an upper and lower codend was designed to separate fish from Norway lobster during the fishing process by encourage fish to swim into the upper codend by using a frame at the entrance of the lower codend. Separate codends for fish and Norway lobster in the same gear provide the opportunity to selectively reduce small low-value fish, which will reduce catch weight and sorting time onboard the vessel. For this horizontally divided test codend and a standard codend, in which the catch was mixed, quality assessments were performed on the same batches of fish during three steps of the value chain: i) aboard the fishing vessel; ii) at the Fishermen's Collection Central, and iii) in the production plant. Four species of fish and fillets from fish caught in the upper codend of the test codend were of significantly better quality for several of the assessed parameters compared with those caught in the standard codend: i) newly caught fish showed significantly less scale loss and discolourations and had significantly better texture; ii) landed fish had significantly better skin appearance and texture and significantly fewer discolourations; and iii) fillets showed significantly fewer blood spots and had significantly better texture. There were no differences in injuries for newly caught fish or gaping and bruises for fillets between the test and standard codends. The decrease in catch-related damages in the test codend is explained by little contact between fish and animals with hard or spiny surfaces due to successful separation of fish and Norway lobster into the upper and lower codends, respectively, and by lower catch weight in the upper codend of the

  19. Successful Beam-Beam Tuneshift Compensation

    SciTech Connect

    Bishofberger, Kip Aaron

    2005-01-01

    The performance of synchrotron colliders has been limited by the beam-beam limit, a maximum tuneshift that colliding bunches could sustain. Due to bunch-to-bunch tune variation and intra-bunch tune spread, larger tuneshifts produce severe emittance growth. Breaking through this constraint has been viewed as impossible for several decades. This dissertation introduces the physics of ultra-relativistic synchrotrons and low-energy electron beams, with emphasis placed on the limits of the Tevatron and the needs of a tuneshift-compensation device. A detailed analysis of the Tevatron Electron Lens (TEL) is given, comparing theoretical models to experimental data whenever possible. Finally, results of Tevatron operations with inclusion of the TEL are presented and analyzed. It is shown that the TEL provides a way to shatter the previously inescapable beam-beam limit.

  20. BEAMS3D Neutral Beam Injection Model

    SciTech Connect

    Lazerson, Samuel

    2014-04-14

    With the advent of applied 3D fi elds in Tokamaks and modern high performance stellarators, a need has arisen to address non-axisymmetric effects on neutral beam heating and fueling. We report on the development of a fully 3D neutral beam injection (NBI) model, BEAMS3D, which addresses this need by coupling 3D equilibria to a guiding center code capable of modeling neutral and charged particle trajectories across the separatrix and into the plasma core. Ionization, neutralization, charge-exchange, viscous velocity reduction, and pitch angle scattering are modeled with the ADAS atomic physics database [1]. Benchmark calculations are presented to validate the collisionless particle orbits, neutral beam injection model, frictional drag, and pitch angle scattering effects. A calculation of neutral beam heating in the NCSX device is performed, highlighting the capability of the code to handle 3D magnetic fields.

  1. Anomalous beam diffusion near beam-beam synchrobetatron resonances

    NASA Astrophysics Data System (ADS)

    Sen, Tanaji

    2012-10-01

    The diffusion process near low order synchrobetatron resonances driven by beam-beam interactions at a crossing angle is investigated. Macroscopic observables such as beam emittance, lifetime, and beam profiles are calculated. These are followed with detailed studies of microscopic quantities such as the evolution of the variance at several transverse amplitudes and single particle probability distribution functions. We present evidence to show that the observed diffusion is anomalous and the dynamics follows a non-Markovian continuous time random walk process. We derive a modified master equation to replace the Chapman-Kolmogorov equation in action-angle space and a fractional diffusion equation to describe the density evolution for this class of processes.

  2. High energy beam lines

    NASA Astrophysics Data System (ADS)

    Marchetto, M.; Laxdal, R. E.

    2014-01-01

    The ISAC post accelerator comprises an RFQ, DTL and SC-linac. The high energy beam lines connect the linear accelerators as well as deliver the accelerated beams to two different experimental areas. The medium energy beam transport (MEBT) line connects the RFQ to the DTL. The high energy beam transport (HEBT) line connects the DTL to the ISAC-I experimental stations (DRAGON, TUDA-I, GPS). The DTL to superconducting beam (DSB) transport line connects the ISAC-I and ISAC-II linacs. The superconducting energy beam transport (SEBT) line connects the SC linac to the ISAC-II experimental station (TUDA-II, HERACLES, TIGRESS, EMMA and GPS). All these lines have the function of transporting and matching the beams to the downstream sections by manipulating the transverse and longitudinal phase space. They also contain diagnostic devices to measure the beam properties.

  3. Electron Beam Freeform Fabrication

    NASA Video Gallery

    Electron Beam Freeform Fabrication (EBF3) is a process by which NASA hopes to build metal parts in zero gravity environments. It's a layer-additive process that uses an electron beam and a solid wi...

  4. Intra-beam scattering

    NASA Astrophysics Data System (ADS)

    Piwinski, A.

    Intra-beam scattering is analysed and the rise times or damping times of the beam dimensions are derived. The theoretical results are compared with experimental values obtained on the CERN AA and SPS machines.

  5. Laser-Beam Separator

    NASA Technical Reports Server (NTRS)

    Mcdermid, I. S.

    1984-01-01

    Train of prisms and optical stop separate fundamental beam of laser from second and higher order harmonics of beam produced in certain crystals and by stimulated Raman scattering in gases and liquids.

  6. Ets-1 mRNA expression in effusions of serous ovarian carcinoma patients is a marker of poor outcome.

    PubMed

    Davidson, B; Risberg, B; Goldberg, I; Nesland, J M; Berner, A; Tropé, C G; Kristensen, G B; Bryne, M; Reich, R

    2001-12-01

    Ets-1 proto-oncogene is a transcription factor with a role in the activation of metastasis-associated molecules. We recently found that Ets-1 mRNA expression in solid tumors is a marker of poor prognosis in ovarian carcinoma. The objective of this study was to compare the expression of Ets-1 mRNA in effusions and primary and metastatic tumors of serous ovarian carcinoma patients and to evaluate its prognostic role in effusions. Sections from 67 malignant effusions and 90 primary and metastatic lesions were evaluated for expression of Ets-1 using mRNA in situ hybridization. Expression of Ets-1 mRNA was detected in carcinoma cells in 24 of 67 (36%) effusions. Expression in cancer cells was similar in peritoneal and pleural effusions. In solid lesions Ets-1 expression was detected in both tumor cells and stromal cells in 34 of 90 (38%) lesions. Ets-1 expression in tumor cells showed a strong association with that of stromal cells (p <0.001). Ets-1 expression in effusions showed an association with mRNA expression of basic fibroblast growth factor, previously studied in this patient cohort (p = 0.019). Ets-1 expression in solid lesions showed an association with mRNA expression of vascular endothelial growth factor (p <0.001 for both carcinoma and stromal cells), basic fibroblast growth factor (p = 0.007 for carcinoma cells, p = 0.006 for stromal cells), and interleukin-8 (IL-8) (p = 0.001 for tumor cells). Ets-1 mRNA showed upregulation in metastases when compared with effusion specimens (p = 0.028). In univariate survival analysis Ets-1 expression in carcinoma cells in effusions correlated with poor survival (p = 0.003). Our findings confirm the role of Ets-1 as a novel prognostic marker in advanced-stage ovarian carcinoma and extend it to effusion specimens. The elevated expression in solid metastases supports a central role in tumor progression as well. The association between Ets-1 mRNA expression and the expression of angiogenic genes, documented also in our

  7. Vowels and Consonants in the Brain: Evidence from Magnetoencephalographic Studies on the N1m in Normal-Hearing Listeners

    PubMed Central

    Manca, Anna Dora; Grimaldi, Mirko

    2016-01-01

    Speech sound perception is one of the most fascinating tasks performed by the human brain. It involves a mapping from continuous acoustic waveforms onto the discrete phonological units computed to store words in the mental lexicon. In this article, we review the magnetoencephalographic studies that have explored the timing and morphology of the N1m component to investigate how vowels and consonants are computed and represented within the auditory cortex. The neurons that are involved in the N1m act to construct a sensory memory of the stimulus due to spatially and temporally distributed activation patterns within the auditory cortex. Indeed, localization of auditory fields maps in animals and humans suggested two levels of sound coding, a tonotopy dimension for spectral properties and a tonochrony dimension for temporal properties of sounds. When the stimulus is a complex speech sound, tonotopy and tonochrony data may give important information to assess whether the speech sound parsing and decoding are generated by pure bottom-up reflection of acoustic differences or whether they are additionally affected by top-down processes related to phonological categories. Hints supporting pure bottom-up processing coexist with hints supporting top-down abstract phoneme representation. Actually, N1m data (amplitude, latency, source generators, and hemispheric distribution) are limited and do not help to disentangle the issue. The nature of these limitations is discussed. Moreover, neurophysiological studies on animals and neuroimaging studies on humans have been taken into consideration. We compare also the N1m findings with the investigation of the magnetic mismatch negativity (MMNm) component and with the analogous electrical components, the N1 and the MMN. We conclude that N1 seems more sensitive to capture lateralization and hierarchical processes than N1m, although the data are very preliminary. Finally, we suggest that MEG data should be integrated with EEG data in the

  8. Electron beam focusing system

    SciTech Connect

    Dikansky, N.; Nagaitsev, S.; Parkhomchuk, V.

    1997-09-01

    The high energy electron cooling requires a very cold electron beam. Thus, the electron beam focusing system is very important for the performance of electron cooling. A system with and without longitudinal magnetic field is presented for discussion. Interaction of electron beam with the vacuum chamber as well as with the background ions and stored antiprotons can cause the coherent electron beam instabilities. Focusing system requirements needed to suppress these instabilities are presented.

  9. Beam Dynamics for ARIA

    SciTech Connect

    Ekdahl, Carl August Jr.

    2014-10-14

    Beam dynamics issues are assessed for a new linear induction electron accelerator being designed for flash radiography of large explosively driven hydrodynamic experiments. Special attention is paid to equilibrium beam transport, possible emittance growth, and beam stability. It is concluded that a radiographic quality beam will be produced possible if engineering standards and construction details are equivalent to those on the present radiography accelerators at Los Alamos.

  10. PARTICLE BEAM TRACKING CIRCUIT

    DOEpatents

    Anderson, O.A.

    1959-05-01

    >A particle-beam tracking and correcting circuit is described. Beam induction electrodes are placed on either side of the beam, and potentials induced by the beam are compared in a voltage comparator or discriminator. This comparison produces an error signal which modifies the fm curve at the voltage applied to the drift tube, thereby returning the orbit to the preferred position. The arrangement serves also to synchronize accelerating frequency and magnetic field growth. (T.R.H.)

  11. Confinement of bunched beams

    NASA Astrophysics Data System (ADS)

    Hess, Mark; Chen, Chiping

    2001-05-01

    The non-relativistic motion is analyzed for a highly bunched beam propagating through a perfectly conducting cylindrical pipe confined radially by a constant magnetic field parallel to the conductor axis, using a Green's function technique and Hamiltonian dynamics analysis. It is shown that for the confinement of beams with the same charge per unit length, the maximum value of the effective self-field parameter for a highly bunched beam is significantly lower than the Brillouin density limit for an unbunched beam.

  12. Coulomb excitation of a {sup 78}Rb radioactive beam.

    SciTech Connect

    Schwartz, J.

    1998-11-18

    In order to test the feasibility of Coulomb excitation of radioactive projectiles with low beam energies and intensities, they have produced a secondary radioactive beam of {sup 78}Rb and Coulomb re-excited it. The beam was produced in the fusion evaporation reaction {sup 24}Mg({sup 58}Ni,3pn){sup 78}Rb at a beam energy of 260 MeV, using the Argonne National Laboratory ATLAS accelerator. The residues of interest were separated from other reaction products and non-interacting beam using the Fragment Mass Analyzer (FMA). The beam leaving the FMA was {sup 78}Kr and {sup 78}Rb{sup gs,m1,m2}, which was refocused onto a {sup 58}Ni secondary target. They have extracted a spectrum of {gamma}-rays associated with re-excitation of A = 78 isobars. The re-excitation of stable {sup 78}Kr was observed, which serves as a reference. Gamma-rays associated with excitation of {sup 78}Rb{sup gs,m1,m2} were also seen. The measured yields indicate that all the {sup 78}Rb states are highly deformed.

  13. Study of beam-beam effects in eRHIC

    SciTech Connect

    Hao, Y.; Litvinenko, V.; Ptitsyn, V.

    2010-05-23

    Beam-beam effects in eRHIC have a number of unique features, which distinguish them from both hadron and lepton colliders. Due to beam-beam interaction, both electron and hadron beams would suffer quality degradation or beam loss from without proper treatments. Those features need novel study and dedicate countermeasures. We study the beam dynamics and resulting luminosity of the characteristics, including mismatch, disruption and pinch effects on electron beam, in additional to their consequences on the opposing beam as a wake field and other incoherent effects of hadron beam. We also carry out countermeasures to prevent beam quality degrade and coherent instability.

  14. Dual beam optical interferometer

    NASA Technical Reports Server (NTRS)

    Gutierrez, Roman C. (Inventor)

    2003-01-01

    A dual beam interferometer device is disclosed that enables moving an optics module in a direction, which changes the path lengths of two beams of light. The two beams reflect off a surface of an object and generate different speckle patterns detected by an element, such as a camera. The camera detects a characteristic of the surface.

  15. ATA beam director experiment

    SciTech Connect

    Lee, E.P.; Younger, F.C.; Cruz, G.E.; Nolting, E.

    1986-06-23

    This report describes beam director elements for an experiment at the Advanced Test Accelerator. The elements described include a vernier magnet for beam aiming, an achromat magnet, and an isolation system for the beam interface. These components are built at small scale for concept testing. (JDH)

  16. Cooling of stored beams

    SciTech Connect

    Mills, F.E.

    1986-10-15

    Beam cooling methods developed for the accumulation of antiprotons are being employed to assist in the performance of experiments in Nuclear and Particle Physics with ion beams stored in storage rings. The physics of beam cooling, and the ranges of utility of stochastic and electron cooling are discussed in this paper.

  17. Beam injection into RHIC

    SciTech Connect

    Fischer, W.; Hahn, H.; MacKay, W.W.; Satogata, T.; Tsoupas, N.; Zhang, W.

    1997-07-01

    During the RHIC sextant test in January 1997 beam was injected into a sixth of one of the rings for the first time. The authors describe the injection zone and its bottlenecks. They report on the commissioning of the injection system, on beam based measurements of the kickers and the application program to steer the beam.

  18. Electron beam device

    DOEpatents

    Beckner, E.H.; Clauser, M.J.

    1975-08-12

    This patent pertains to an electron beam device in which a hollow target is symmetrically irradiated by a high energy, pulsed electron beam about its periphery and wherein the outer portion of the target has a thickness slightly greater than required to absorb the electron beam pulse energy. (auth)

  19. Wide dynamic range beam profile monitor

    SciTech Connect

    Lee, D.M.; van Dyck, O.B.; Bilskie, J.R.; Brown, D.; Hardekopf, R.

    1985-10-01

    An economical harp multiplexer system has been developed to achieve a wide dynamic range. The harp system incorporates a pneumatically actuated harp detector with ceramic boards and carbon wires; a high-sensitivity multiplexer packaged in a double-wide NIM module; and flat, shielded ribbon cable consisting of individual twisted pairs. The system multiplexes 30 wires in each of the x and y planes simultaneously and operates with or without computer control. The system has operated in beams of 100 nA to 1 mA, 1- to 120-Hz repetition rate, with a signal-to-noise ratio of greater than 10/1.

  20. Wide dynamic range beam profile monitor

    SciTech Connect

    Lee, D.M.; Brown, D.; Hardekopf, R.; Bilskie, J.R.; van Dyck, O.B.V.

    1985-01-01

    An economical harp multiplexer system has been developed to achieve a wide dynamic range. The harp system incorporates a pneumatically actuated harp detector with ceramic boards and carbon wires; a high-sensitivity multiplexer packaged in a double-wide NIM module; and flat, shielded ribbon cable consisting of individual twisted pairs. The system multiplexes 30 wires in each of the x and y planes simultaneously and operates with or without computer control. The system has operated in beams of 100 nA to 1 mA, 1- to 120-Hz repetition rate, with a signal-to-noise ratio of greater than 10/1.

  1. Distribution, biomass and size of grooved Tanner crabs (Chionoecetes tanneri) from annual bottom trawl surveys (2003-2010) along the U.S. west coast (Washington to California)

    NASA Astrophysics Data System (ADS)

    Keller, Aimee A.; Harms, John H.; Buchanan, John C.

    2012-09-01

    Catch and distribution of grooved Tanner crab (Chionoecetes tanneri Rathbun, 1893) from the Northwest Fisheries Science Center's bottom trawl survey (55-1280 m) were examined along the U.S. west coast (lat. 32°30'N-48°30'N). Grooved Tanner crabs were present in 28% of tows and occurred primarily at depths from 300 to 1280 m. Annual biomass (metric tons, mt) indices and density (kg km-2) estimates for the population varied significantly throughout the study area and within five International North Pacific Fisheries Commission (INPFC) statistical areas. Highest estimates occurred in the Monterey INPFC area (lat. 36°N-40°30'N) and within the 601-800 m depth interval. Depth distribution varied by year and coast-wide catch-weighted average depths (m) were significantly correlated with average annual Pacific Decadal Oscillation (PDO) indices (2003-2010), a measure of Pacific climate variability. Annual mean carapace widths (CW), measured from 2005 to 2010, were always greater for males (96.9-113.9 mm) relative to females (85.3-95.8 mm). Size frequency distributions varied by year with strong recruitment for both sexes apparent in 2010. Grooved Tanner crabs were partially segregated by depth and stage. Males and females were found in all depth intervals but the average depth of adult females was significantly shallower (756 m) than adult males (837 m); adults were significantly shallower than subadult female (907 m) and subadult male (927 m) crabs.

  2. Spatiotemporal factors affecting fish harvest and their use in estimating the monthly yield of single otter trawls in Putuo district of Zhoushan, China

    NASA Astrophysics Data System (ADS)

    Wang, Yingbin; Zheng, Ji; Wang, Yang; Zheng, Xianzhi

    2012-07-01

    We used generalized additive models (GAM) to analyze the relationship between spatiotemporal factors and catch, and to estimate the monthly marine fishery yield of single otter trawls in Putuo district of Zhoushan, China. We used logbooks from five commercial fishing boats and data in government's monthly statistical reports. We developed two GAM models: one included temporal variables (month and hauling time) and spatial variables (longitude and latitude), and another included just two variables, month and the number of fishing boats. Our results suggest that temporal factors explained more of the variability in catch than spatial factors. Furthermore, month explained the majority of variation in catch. Change in spatial distribution of fleet had a temporal component as the boats fished within a relatively small area within the same month, but the area varied among months. The number of boats fishing in each month also explained a large proportion of the variation in catch. Engine power had no effect on catch. The pseudo-coefficients (PCf) of the two GAMs were 0.13 and 0.29 respectively, indicating the both had good fits. The model yielded estimates that were very similar to those in the governmental reports between January to September, with relative estimate errors (REE) of <18%. However, the yields in October and November were significantly underestimated, with REEs of 36% and 27%, respectively.

  3. Demography of a deep-sea lantern shark (Etmopterus spinax) caught in trawl fisheries of the northeastern Atlantic: Application of Leslie matrices with incorporated uncertainties

    NASA Astrophysics Data System (ADS)

    Coelho, Rui; Alpizar-Jara, Russell; Erzini, Karim

    2015-05-01

    The deep-sea lantern shark Etmopterus spinax occurs in the northeast Atlantic on or near the bottoms of the outer continental shelves and slopes, and is regularly captured as bycatch in deep-water commercial fisheries. Given the lack of knowledge on the impacts of fisheries on this species, a demographic analysis using age-based Leslie matrices was carried out. Given the uncertainties in the mortality estimates and in the available life history parameters, several different scenarios, some incorporating stochasticity in the life history parameters (using Monte Carlo simulation), were analyzed. If only natural mortality were considered, even after introducing uncertainties in all parameters, the estimated population growth rate (λ) suggested an increasing population. However, if fishing mortality from trawl fisheries is considered, the estimates of λ either indicated increasing or declining populations. In these latter cases, the uncertainties in the species reproductive cycle seemed to be particularly relevant, as a 2-year reproductive cycle indicated a stable population, while a longer (3-year cycle) indicated a declining population. The estimated matrix elasticities were in general higher for the survivorship parameters of the younger age classes and tended to decrease for the older ages. This highlights the susceptibility of this deep-sea squaloid to increasing fishing mortality, emphasizing that even though this is a small-sized species, it shows population dynamics patterns more typical of the larger-sized and in general more vulnerable species.

  4. BEAM CONTROL PROBE

    DOEpatents

    Chesterman, A.W.

    1959-03-17

    A probe is described for intercepting a desired portion of a beam of charged particles and for indicating the spatial disposition of the beam. The disclosed probe assembly includes a pair of pivotally mounted vanes moveable into a single plane with adjacent edges joining and a calibrated mechanical arrangement for pivoting the vancs apart. When the probe is disposed in the path of a charged particle beam, the vanes may be adjusted according to the beam current received in each vane to ascertain the dimension of the beam.

  5. Beams for kaon research

    SciTech Connect

    Pile, P.H.

    1985-01-01

    A proposed 1-2 GeV/c kaon beam line for BNL, designed to deliver momentum analyzed negative kaon beams with intensities above 10/sup 6/ per spill, is discussed. The beam intensity is expected to be about an order of magnitude greater than presently available and it is expected to be a clean beam with no more than 1:1 (..pi../sup -/,..mu../sup -/,e/sup -/)/K/sup -/. The beam line will allow a detailed investigation of strangeness -2 systems as well as continued investigations of strangeness -1 systems.

  6. Neutral beam monitoring

    DOEpatents

    Fink, Joel H.

    1981-08-18

    Method and apparatus for monitoring characteristics of a high energy neutral beam. A neutral beam is generated by passing accelerated ions through a walled cell containing a low energy neutral gas, such that charge exchange neutralizes the high energy ion beam. The neutral beam is monitored by detecting the current flowing through the cell wall produced by low energy ions which drift to the wall after the charge exchange. By segmenting the wall into radial and longitudinal segments various beam conditions are further identified.

  7. Neurodevelopmental Expression Profile of Dimeric and Monomeric Group 1 mGluRs: Relevance to Schizophrenia Pathogenesis and Treatment

    PubMed Central

    Lum, Jeremy S.; Fernandez, Francesca; Matosin, Natalie; Andrews, Jessica L.; Huang, Xu-Feng; Ooi, Lezanne; Newell, Kelly A.

    2016-01-01

    Group 1 metabotropic glutamate receptors (mGluR1/mGluR5) play an integral role in neurodevelopment and are implicated in psychiatric disorders, such as schizophrenia. mGluR1 and mGluR5 are expressed as homodimers, which is important for their functionality and pharmacology. We examined the protein expression of dimeric and monomeric mGluR1α and mGluR5 in the prefrontal cortex (PFC) and hippocampus throughout development (juvenile/adolescence/adulthood) and in the perinatal phencyclidine (PCP) model of schizophrenia. Under control conditions, mGluR1α dimer expression increased between juvenile and adolescence (209–328%), while monomeric levels remained consistent. Dimeric mGluR5 was steadily expressed across all time points; monomeric mGluR5 was present in juveniles, dramatically declining at adolescence and adulthood (−97–99%). The mGluR regulators, Homer 1b/c and Norbin, significantly increased with age in the PFC and hippocampus. Perinatal PCP treatment significantly increased juvenile dimeric mGluR5 levels in the PFC and hippocampus (37–50%) but decreased hippocampal mGluR1α (−50–56%). Perinatal PCP treatment also reduced mGluR1α dimer levels in the PFC at adulthood (−31%). These results suggest that Group 1 mGluRs have distinct dimeric and monomeric neurodevelopmental patterns, which may impact their pharmacological profiles at specific ages. Perinatal PCP treatment disrupted the early expression of Group 1 mGluRs which may underlie neurodevelopmental alterations observed in this model. PMID:27721389

  8. Heterogeneous expression of melatonin receptor MT1 mRNA in the rat intestine under control and fasting conditions.

    PubMed

    Soták, Matús; Mrnka, Libor; Pácha, Jirí

    2006-09-01

    Melatonin is found in mammalian central nervous system and various peripheral tissues including gastrointestinal tract (GIT) where it participates in the regulation of intestinal motility, blood flow, immunomodulation, ion transport, cell proliferation and scavenging of free radicals. Some of these effects are achieved via melatonin binding to specific receptors, MT1 and MT2. As no thorough study on the expression of these receptors in the GIT has yet been done, the aim of this study was to determine the MT1 mRNA expression in the rat intestine under both control and fasting conditions. Our results suggest that MT1 mRNA is present in epithelial as well as subepithelial layer, with higher expression in the latter in all intestinal segments studied. The highest signal of the MT1 transcript along the rostro-caudal intestinal axis was found both in epithelial and subepithelial layers of the duodenum. Nevertheless, duodenal MT1 mRNA expression did not reach the level found in pituitary gland. In a 12:12-hr light:dark cycle a MT1 receptor expression in the subepithelial layer of rat distal colon did not manifest a significant diurnal rhythm. Short-term fasting increased the expression of MT1 transcript in the subepithelial layer of both the small and large intestine. During long-term fasting the increase persisted only in distal colon while a return to control levels was observed in small intestinal segments. In conclusion we demonstrated heterogeneous expression of MT1 receptor in the rat intestine and showed that its expression is up-regulated by nutritional deprivation.

  9. Coordinated expression and mechanism of induction of HSP32 (heme oxygenase-1) mRNA by hyperthermia in rat organs.

    PubMed

    Raju, V S; Maines, M D

    1994-04-01

    Heme oxygenase isozymes, HO-1 and HO-2, catalyze the cleavage of heme b (Fe-protoporphyrin-IX) at the alpha-meso carbon bridge to form the antioxidant, biliverdin IX alpha, and the putative cellular messenger, carbon monoxide. HO-1 is a heat shock (HSP32) or stress protein, while HO-2 is a noninducible enzyme. Presently, we have examined the time course of expression of HSP32 in liver, kidney, and heart of rats exposed to hyperthermia and investigated the mechanism of induction of HO-1 by hyperthermia. We report a coordinated induction response of all organs to elevated ambient temperature (42 degrees C, 20 min). Specifically, the maximum induction of the 1.8 kb HO-1 mRNA was observed 1 h after hyperthermia and reached a value 20-40-fold that of the control; the transcript level approximated the control value by 6 h after heat stress. In contrast, the levels and the ratio of the 1.3 and 1.9 kb HO-2 transcripts were not affected by hyperthermia. As judged by in vitro nuclear transcription run-on assays, thermal stress caused the stimulation of HO-1 gene transcription. The increase in HO-1 mRNA transcription was accompanied by an increase in binding of nuclear factor(s) to the heat shock element in the promoter region of the gene. The increase of the HO-1 mRNA was reflected in increases in both heme oxygenase activity and in immunoreactive HO-1 protein. We suggest that the induction of heme oxygenase by heat stress is a physiologically relevant defense mechanism whereby both the degradation of heme of denatured hemoproteins and the generation of biologically active products of heme catabolism are enhanced.

  10. Soy protein affects serum insulin and hepatic SREBP-1 mRNA and reduces fatty liver in rats.

    PubMed

    Ascencio, Claudia; Torres, Nimbe; Isoard-Acosta, Fernando; Gómez-Pérez, Francisco J; Hernández-Pando, Rogelio; Tovar, Armando R

    2004-03-01

    The consumption of soy protein was shown to reduce blood lipids in humans and other animal species. Furthermore, it was shown that the ingestion of soy protein maintains normal insulinemia. Thus, the purpose of the present study was to determine whether soy protein affects the synthesis of lipids in the liver through sterol-regulatory element binding protein-1 (SREBP-1) due to modulation of insulin levels. We first conducted a short-term study in which rats were fed a diet containing 18 g/100 g soy protein or casein for 10 d. Rats fed soy protein had significantly lower serum insulin concentrations than rats fed casein, and this response was accompanied by an elevation in hepatic SREBP-1 mRNA that was 53% lower than that in rats fed casein at d 10. The increase in SREBP-1 mRNA occurred 30 min after consumption of the casein mean, and increased steadily for the next 2 h. We then conducted a second study to assess the long-term effect of soy protein consumption for 150 d on hepatic SREBP-1 expression. Long-term consumption of soy protein maintained normal insulin concentrations compared with rats fed casein, which were hyperinsulinemic. Thus, rats fed the soy protein diet had significantly lower expression of SREBP-1 mRNA than rats fed the casein diet. Soy protein intake also reduced the expression of fatty acid synthase (FAS) and malic enzyme, leading to low hepatic lipid depots of triglycerides and cholesterol, whereas rats fed the casein diet developed fatty liver. These data suggest that soy protein regulates SREBP-1 expression by modulating serum insulin concentration, thus preventing the development of fatty liver.

  11. Interaction of KIR genes and G1M immunoglobulin allotypes confer susceptibility to type 2 diabetes in Puerto Rican Americans.

    PubMed

    Zuniga, Joaquin; Romero, Viviana; Azocar, Jose; Stern, Joel N H; Clavijo, Olga; Almeciga, Ingrid; Encinales, Liliana; Avendano, Angel; Fridkis-Hareli, Masha; Pandey, Janardan P; Yunis, Edmond J

    2006-11-01

    The susceptibility to type 2 diabetes (T2D) involves genetic factors. We studied the distribution of KIR and MHC class I ligands phenotype and genotype frequencies, as well as immunoglobulin KM and GM allotype frequencies in a group of patients (N = 95) with T2D and ethnically matched healthy controls (N = 74) with Puerto Rican ethnic background. We found a slight increase of the 2DL3/2DL3 homozygous genotype in T2D. Moreover, the association between 2DL3/2DL3 genotype was significant in the presence of 2DS4 (pC = 0.01). Also, we observed an epistatic effect of the interaction of 2DL3/2DL3, 2DS4 with allele z of G1M in T2D (pC = 0.004, OR = 3.60, 95% CI, 1.62-8.10). This genetic interaction between KIR and G1M allotypes, associated with T2D, was also significant by multiple logistic regression analysis (p < 0.0001, OR = 4.90, 95% CI, 2.12-11.3). We did not detect population stratification using unlinked short tandem repeat (STR) markers, demonstrating that the patients and controls were ethnically matched. Hence, we have demonstrated in this study an epistatic interaction between KIR genes and the G1M allotype that influences the susceptibility to T2D in Puerto Rican Americans. Our findings are important for understanding the autoimmune or innate immune inflammatory-mediated mechanisms involved in the pathogenesis of T2D.

  12. Monitoring the production of aflatoxin B1 in wheat by measuring the concentration of nor-1 mRNA.

    PubMed

    Mayer, Zsuzsanna; Färber, Paul; Geisen, Rolf

    2003-02-01

    A real-time reverse transcription-PCR system has been used to monitor the expression of an aflatoxin biosynthetic gene of Aspergillus flavus in wheat. Therefore, total RNA was isolated from infected wheat samples, reverse transcribed and subjected to real-time PCR. In parallel all samples were analyzed by high-pressure liquid chromatography for aflatoxin B(1) production. The primer-probe system of the real-time PCR was targeted against nor-1, a gene of the aflatoxin biosynthetic pathway. By application of this method the nor-1 transcription was quantified during the course of incubation. After 4 days of incubation nor-1 mRNA could be detected for the first time. The amount of nor-1 mRNA increased rapidly, and the maximum was achieved after 6 days. Then, starting very slowly, the mRNA was degraded until day 8, and this was followed by a very fast degradation, reaching nondetectable levels at days 9 and 10. First traces of aflatoxin B(1)could be detected between the 5th and 6th day of incubation. The aflatoxin concentration reached its maximum after 9 days of incubation and remained constant for the whole period of observation. To ensure that differences in the nor-1 mRNA concentration were due to different expression levels, the expression of the constitutively expressed beta-tubulin gene (benA56) has also been monitored. The expression of benA56 remained constant during the whole incubation time. As a parameter for fungal growth, the number of nor-1 gene copies was determined during the course of incubation. The numbers of nor-1 gene copies increased at the beginning of the incubation and reached a plateau at day 5. They correlate well with the viable counts albeit at a higher level. PMID:12571042

  13. Occupational Toluene Exposure Induces Cytochrome P450 2E1 mRNA Expression in Peripheral Lymphocytes

    PubMed Central

    Mendoza-Cantú, Ania; Castorena-Torres, Fabiola; de León, Mario Bermúdez; Cisneros, Bulmaro; López-Carrillo, Lizbeth; Rojas-García, Aurora E.; Aguilar-Salinas, Alberto; Manno, Maurizio; Albores, Arnulfo

    2006-01-01

    Print workers are exposed to organic solvents, of which the systemic toxicant toluene is a main component. Toluene induces expression of cytochrome P450 2E1 (CYP2E1), an enzyme involved in its own metabolism and that of other protoxicants, including some procarcinogens. Therefore, we investigated the association between toluene exposure and the CYP2E1 response, as assessed by mRNA content in peripheral lymphocytes or the 6-hydroxychlorzoxazone (6OH-CHZ)/chlorzoxazone (CHZ) quotient (known as CHZ metabolic ratio) in plasma, and the role of genotype (5′-flanking region RsaI/PstI polymorphic sites) in 97 male print workers. The geometric mean (GM) of toluene concentration in the air was 52.80 ppm (10–760 ppm); 54% of the study participants were exposed to toluene concentrations that exceeded the maximum permissible exposure level (MPEL). The GM of urinary hippuric acid at the end of a work shift (0.041 g/g creatinine) was elevated relative to that before the shift (0.027 g/g creatinine; p < 0.05). The GM of the CHZ metabolic ratio was 0.33 (0–9.3), with 40% of the subjects having ratios below the GM. However, the average CYP2E1 mRNA level in peripheral lymphocytes was 1.07 (0.30–3.08), and CYP2E1 mRNA levels within subjects correlated with the toluene exposure ratio (environmental toluene concentration:urinary hippuric acid concentration) (p = 0.014). Genotype did not alter the association between the toluene exposure ratio and mRNA content. In summary, with further validation, CYP2E1 mRNA content in peripheral lymphocytes could be a sensitive and noninvasive biomarker for the continuous monitoring of toluene effects in exposed persons. PMID:16581535

  14. Ricin Inhibits Activation of the Unfolded Protein Response by Preventing Splicing of the HAC1 mRNA*

    PubMed Central

    Parikh, Bijal A.; Tortora, Andrew; Li, Xiao-Ping; Tumer, Nilgun E.

    2011-01-01

    Ricin A chain (RTA) inhibits protein synthesis by removing a specific adenine from the highly conserved α-sarcin/ricin loop in the large rRNA. Expression of RTA with its own signal sequence in yeast resulted in its translocation into the endoplasmic reticulum (ER) and subsequent glycosylation. Because RTA must unfold within the ER, it may be vulnerable to host defenses, such as the unfolded protein response (UPR). UPR was induced in cells expressing an active site mutant but not the wild type RTA, indicating that the active site of RTA played a role in perturbing the ER stress response. The inactive RTA without the signal sequence did not induce UPR, indicating that translocation into the ER was critical for induction of UPR. The wild type RTA inhibited activation of UPR not only due to ER stress induced by the protein itself but also by global effectors such as tunicamycin and dithiothreitol. Mature RTA without the signal sequence also inhibited UPR, providing evidence that inhibition of UPR occurred on the cytosolic face of the ER. RTA could not inhibit UPR when the spliced form of HAC1 mRNA was provided in trans, indicating that it had a direct effect on UPR upstream of HAC1-dependent transcriptional activation. Only the precursor form of HAC1 mRNA was detected in cells expressing RTA after exposure to ER stress, demonstrating that ricin inhibits activation of UPR by preventing HAC1 mRNA splicing. The RTA mutants that depurinated ribosomes but did not kill cells were not able to inhibit activation of UPR by tunicamycin, providing evidence that the inability to activate UPR in response to ER stress contributes to the cytotoxicity of ricin. PMID:18180297

  15. Physical oceanographic processes at candidate dredged-material disposal sites B1B and 1M offshore San Francisco

    SciTech Connect

    Sherwood, C.R.; Denbo, D.W.; Downing, J.P. ); Coats, D.A. )

    1990-10-01

    The US Army Corps of Engineers (USACE), San Francisco District, has identified two candidate sites for ocean disposal of material from several dredging projects in San Francisco Bay. The disposal site is to be designated under Section 103 of the Ocean Dumping Act. One of the specific criteria in the Ocean Dumping Act is that the physical environments of the candidate sites be considered. Toward this goal, the USACE requested that the Pacific Northwest Laboratory conduct a study of physical oceanographic and sediment transport processes at the candidate sites, B1B and 1M. The results of that study are presented in this report. 40 refs., 27 figs., 10 tabs.

  16. A1M/α1-microglobulin is proteolytically activated by myeloperoxidase, binds its heme group and inhibits low density lipoprotein oxidation

    PubMed Central

    Cederlund, Martin; Deronic, Adnan; Pallon, Jan; Sørensen, Ole E.; Åkerström, Bo

    2015-01-01

    α1-microglobulin (A1M) is a 26 kDa plasma and tissue protein with reductase activity and radical- and heme-binding anti-oxidative functions. In addition, exposure of A1M to hemoglobin has been shown to induce proteolytic elimination of a C-terminal tetrapeptide yielding a heme-degrading form, truncated A1M (t-A1M). Myeloperoxidase (MPO), a heme-containing enzyme that catalyzes the production of free radicals and hypochlorite, is released by neutrophils during the inflammatory response to bacterial infections. MPO-induced low density lipoprotein (LDL)-oxidation in blood has been suggested as a causative factor in atherosclerosis. In this study we have hypothesized that A1M interacts with MPO in a similar mode as with hemoglobin, and is a regulator of its activity. The results show that A1M is proteolytically cleaved, with formation of t-A1M, after exposure to MPO, and that t-A1M contains iron and heme-degradation products. The reaction is dependent of pH, time and concentration of substrates and a pH-value around 7 is shown to be optimal for cleavage. Furthermore, A1M inhibits MPO- and hydrogen peroxide-induced oxidation of LDL. The results suggest that A1M may have a role as an inhibitor of the damaging effects of the neutrophil respiratory burst on bystander tissue components. PMID:25698971

  17. A manganese-dependent ribozyme in the 3'-untranslated region of Xenopus Vg1 mRNA.

    PubMed

    Kolev, Nikolay G; Hartland, Emilia I; Huber, Paul W

    2008-10-01

    The smallest catalytic RNA identified to date is a manganese-dependent ribozyme that requires only a complex between GAAA and UUU to effect site-specific cleavage. We show here that this ribozyme occurs naturally in the 3'-UTR of Vg1 and beta-actin mRNAs. In accord with earlier studies with model RNAs, cleavage occurs only in the presence of manganese or cadmium ions and proceeds optimally near 30 degrees C and physiological pH. The time course of cleavage in Vg1 mRNA best fits a two-step process in which both steps are first-order. In Vg1 mRNA, the ribozyme is positioned adjacent to a polyadenylation signal, but has no influence on translation of the mRNA in Xenopus oocytes. Putative GAAA ribozyme structures are also near polyadenylation sites in yeast and rat actin mRNAs. Analysis of sequences in the PolyA Cleavage Site and 3'-UTR Database (PACdb) revealed no particular bias in the frequency or distribution of the GAAA motif that would suggest that this ribozyme is currently or was recently used for cleavage to generate processed transcripts. Nonetheless, we speculate that the complementary strands that comprise the ribozyme may account for the origin of sequence elements that direct present-day 3'-end processing of eukaryotic mRNAs.

  18. Role of Microglial M1/M2 Polarization in Relapse and Remission of Psychiatric Disorders and Diseases

    PubMed Central

    Nakagawa, Yutaka; Chiba, Kenji

    2014-01-01

    Psychiatric disorders such as schizophrenia and major depressive disorder were thought to be caused by neurotransmitter abnormalities. Patients with these disorders often experience relapse and remission; however the underlying molecular mechanisms of relapse and remission still remain unclear. Recent advanced immunological analyses have revealed that M1/M2 polarization of macrophages plays an important role in controlling the balance between promotion and suppression in inflammation. Microglial cells share certain characteristics with macrophages and contribute to immune-surveillance in the central nervous system (CNS). In this review, we summarize immunoregulatory functions of microglia and discuss a possible role of microglial M1/M2 polarization in relapse and remission of psychiatric disorders and diseases. M1 polarized microglia can produce pro-inflammatory cytokines, reactive oxygen species, and nitric oxide, suggesting that these molecules contribute to dysfunction of neural network in the CNS. Alternatively, M2 polarized microglia express cytokines and receptors that are implicated in inhibiting inflammation and restoring homeostasis. Based on these aspects, we propose a possibility that M1 and M2 microglia are related to relapse and remission, respectively in psychiatric disorders and diseases. Consequently, a target molecule skewing M2 polarization of microglia may provide beneficial therapies for these disorders and diseases in the CNS. PMID:25429645

  19. Overexpression of the mitochondrial methyltransferase TFB1M in the mouse does not impact mitoribosomal methylation status or hearing.

    PubMed

    Lee, Seungmin; Rose, Simon; Metodiev, Metodi D; Becker, Lore; Vernaleken, Alexandra; Klopstock, Thomas; Gailus-Durner, Valerie; Fuchs, Helmut; Hrabě De Angelis, Martin; Douthwaite, Stephen; Larsson, Nils-Göran

    2015-12-20

    Mitochondrial dysfunction is a well-established cause of sensorineural deafness, but the pathophysiological events are poorly understood. Non-syndromic deafness and predisposition to aminoglycoside-induced deafness can be caused by specific mutations in the 12S rRNA gene of mtDNA and are thus maternally inherited traits. The pathophysiology induced by mtDNA mutations has traditionally been attributed to deficient oxidative phosphorylation, which causes energy crisis with functional impairment of multiple cellular processes. In contrast, it was recently reported that signaling induced by 'hypermethylation' of two conserved adenosines of 12S rRNA in the mitoribosome is of key pathophysiological importance in sensorineural deafness. In support for this concept, it was reported that overexpression of the essential mitochondrial methyltransferase TFB1M in the mouse was sufficient to induce mitoribosomal hypermethylation and deafness. At variance with this model, we show here that 12S rRNA is near fully methylated in vivo in the mouse and thus cannot be further methylated to any significant extent. Furthermore, bacterial artificial chromosome transgenic mice overexpressing TFB1M have no increase of 12S rRNA methylation levels and hear normally. We thus conclude that therapies directed against mitoribosomal methylation are unlikely to be beneficial to patients with sensorineural hearing loss or other types of mitochondrial disease.

  20. Tocotrienol Attenuates Stress-Induced Gastric Lesions via Activation of Prostaglandin and Upregulation of COX-1 mRNA

    PubMed Central

    Kamisah, Yusof; Chua, Kien Hui; Qodriyah, Hj Mohd Saad

    2013-01-01

    The present study aims to distinguish the effect of tocotrienol on an important gastric protective factor, prostaglandin E2 (PGE2), in stress-induced gastric injury. Twenty-eight Wistar rats were divided into four groups of seven rats each. Two control groups were fed commercial rat diet, and two treatment groups were fed the same diet but with additional dose of omeprazole (20 mg/kg) or tocotrienol (60 mg/kg). After 28 days, rats from one control group and both treated groups were subjected to water-immersion restraint stress for 3.5 hours once. The rats were then sacrificed, their stomach isolated and gastric juice collected, lesions examined, and gastric PGE2 content and cyclooxygenase (COX) mRNA expression were determined. Both the regimes significantly attenuated the total lesion area in the stomach compared to the control. Gastric acidity, which was increased in stress, was significantly reduced in rats supplemented with omeprazole and tocotrienol. The PGE2 content was also significantly higher in the rats given tocotrienol supplementation compared to the control followed by an increase in COX-1 mRNA expression. We conclude that tocotrienol supplementation protected rat gastric mucosa against stress-induced lesions possibly by reducing gastric acidity and preserving gastric PGE2 by increasing COX-1 mRNA. PMID:23970937

  1. Preliminary validation of computational model for neutron flux prediction of Thai Research Reactor (TRR-1/M1)

    NASA Astrophysics Data System (ADS)

    Sabaibang, S.; Lekchaum, S.; Tipayakul, C.

    2015-05-01

    This study is a part of an on-going work to develop a computational model of Thai Research Reactor (TRR-1/M1) which is capable of accurately predicting the neutron flux level and spectrum. The computational model was created by MCNPX program and the CT (Central Thimble) in-core irradiation facility was selected as the location for validation. The comparison was performed with the typical flux measurement method routinely practiced at TRR-1/M1, that is, the foil activation technique. In this technique, gold foil is irradiated for a certain period of time and the activity of the irradiated target is measured to derive the thermal neutron flux. Additionally, the flux measurement with SPND (self-powered neutron detector) was also performed for comparison. The thermal neutron flux from the MCNPX simulation was found to be 1.79×1013 neutron/cm2s while that from the foil activation measurement was 4.68×1013 neutron/cm2s. On the other hand, the thermal neutron flux from the measurement using SPND was 2.47×1013 neutron/cm2s. An assessment of the differences among the three methods was done. The difference of the MCNPX with the foil activation technique was found to be 67.8% and the difference of the MCNPX with the SPND was found to be 27.8%.

  2. B{yields}M{sub 1}M{sub 2}: Factorization, charming penguins, strong phases, and polarization

    SciTech Connect

    Bauer, Christian W.; Pirjol, Dan; Stewart, Iain W.; Rothstein, Ira Z.

    2004-09-01

    Using the soft-collinear effective theory we derive the factorization theorem for the decays B{yields}M{sub 1}M{sub 2} with M{sub 1,2}={pi},K,{rho},K*, at leading order in {lambda}/E{sub M} and {lambda}/m{sub b}. The results derived here apply even if {alpha}{sub s}(E{sub M}{lambda}) is not perturbative, and we prove that the physics sensitive to the E{lambda} scale is the same in B{yields}M{sub 1}M{sub 2} and B{yields}M form factors. We argue that cc penguins could give long-distance effects at leading order. Decays to two transversely polarized vector mesons are discussed. Analyzing B{yields}{pi}{pi} we find predictions for B{sup 0}{yields}{pi}{sup 0}{pi}{sup 0} and vertical bar V{sub ub} vertical bar f{sub +}{sup B0}{yields}{pi}(0) as a function of {gamma}.

  3. Ion Chambers for Monitoring the NuMI Neutrino Beam at Fermilab

    SciTech Connect

    Indurthy, Dharmaraj; Keisler, Ryan; Kopp, Sacha; Mendoza, Steven; Proga, Marek; Pavlovich, Zarko; Zwaska, Robert; Harris, Deborah; Marchionni, Alberto; Morfin, Jorge; Erwin, Albert; Ping Huicana; Velissaris, Christos; Naples, Donna; Northacker, Dave; McDonald, Jeff; Diwan, Milind; Viren, Brett

    2004-11-10

    The Neutrinos at the Main Injector (NuMI) beamline will deliver an intense muon neutrino beam by focusing a beam of mesons into a long evacuated decay volume. The beam must be steered with 1-mRad angular accuracy toward the Soudan Underground Laboratory in northern Minnesota. We have built 4 arrays of ionization chambers to monitor the neutrino beam direction and quality. The arrays are located at 4 stations downstream of the decay volume, and measure the remnant hadron beam and tertiary muons produced along with neutrinos in meson decays. We review how the monitors will be used to make beam quality measurements, and as well review chamber construction details, radiation damage testing, calibration, and test beam results.

  4. Phenotypic and functional characterization of a new human macrophage cell line K1m demonstrating immunophagocytic activity and signalling through HLA class II.

    PubMed Central

    Dialynas, D P; Lee, M J; Shao, L E; Tan, P C; Yu, J

    1997-01-01

    A human macrophage line, designated K1m, has been established from peripheral blood. K1m expresses a number of lineage-specific markers as well as a broad array of intercellular adhesion molecules. In particular, K1m expresses high levels of human leucocyte antigen (HLA) class I and class II. In response to ligation of HLA class II (HLA-DR), but not in response to ligation of HLA class 1, K1m forms tighter homotypic aggregates and develops a striking 'stellate' culture phenotype. K1m also expresses Fc receptors for immunoglobulin G (IgG) (CD64, CD32, and CD16) and can be shown to phagocytose polystyrene latex beads, as well as neuroblastoma cells in the presence of tumour-specific monoclonal antibody (mAb). The K1m cell line should therefore prove useful for studying both signalling through macrophage HLA class II and immunophagocytosis. Images Figure 5 Figure 6 PMID:9176097

  5. Fan-beam intensity modulated proton therapy

    SciTech Connect

    Hill, Patrick; Westerly, David; Mackie, Thomas

    2013-11-15

    Purpose: This paper presents a concept for a proton therapy system capable of delivering intensity modulated proton therapy using a fan beam of protons. This system would allow present and future gantry-based facilities to deliver state-of-the-art proton therapy with the greater normal tissue sparing made possible by intensity modulation techniques.Methods: A method for producing a divergent fan beam of protons using a pair of electromagnetic quadrupoles is described and particle transport through the quadrupole doublet is simulated using a commercially available software package. To manipulate the fan beam of protons, a modulation device is developed. This modulator inserts or retracts acrylic leaves of varying thickness from subsections of the fan beam. Each subsection, or beam channel, creates what effectively becomes a beam spot within the fan area. Each channel is able to provide 0–255 mm of range shift for its associated beam spot, or stop the beam and act as an intensity modulator. Results of particle transport simulations through the quadrupole system are incorporated into the MCNPX Monte Carlo transport code along with a model of the range and intensity modulation device. Several design parameters were investigated and optimized, culminating in the ability to create topotherapy treatment plans using distal-edge tracking on both phantom and patient datasets.Results: Beam transport calculations show that a pair of electromagnetic quadrupoles can be used to create a divergent fan beam of 200 MeV protons over a distance of 2.1 m. The quadrupole lengths were 30 and 48 cm, respectively, with transverse field gradients less than 20 T/m, which is within the range of water-cooled magnets for the quadrupole radii used. MCNPX simulations of topotherapy treatment plans suggest that, when using the distal edge tracking delivery method, many delivery angles are more important than insisting on narrow beam channel widths in order to obtain conformal target coverage

  6. The crystal structure of human protein α1M reveals a chromophore-binding site and two putative protein–protein interfaces

    SciTech Connect

    Zhang, Yangli; Gao, Zengqiang; Guo, Zhen; Zhang, Hongpeng; Zhang, Zhenzhen; Luo, Miao; Hou, Haifeng; Huang, Ailong; Dong, Yuhui; Wang, Deqiang

    2013-09-27

    Highlights: •We determined the first structure of human α1M with heavy electron density of the chromophore. •We proposed a new structural model of the chromophore. •We first revealed that the two conserved surface regions of α1M are proposed as putative protein–protein interface sites. -- Abstract: Lipocalin α1-microglobulin (α1M) is a conserved glycoprotein present in plasma and in the interstitial fluids of all tissues. α1M is linked to a heterogeneous yellow–brown chromophore of unknown structure, and interacts with several target proteins, including α1-inhibitor-3, fibronectin, prothrombin and albumin. To date, there is little knowledge about the interaction sites between α1M and its partners. Here, we report the crystal structure of the human α1M. Due to the crystallization occurring in a low ionic strength solution, the unidentified chromophore with heavy electron density is observed at a hydrophobic inner tube of α1M. In addition, two conserved surface regions of α1M are proposed as putative protein–protein interface sites. Further study is needed to unravel the detailed information about the interaction between α1M and its partners.

  7. Particle beam injection system

    DOEpatents

    Jassby, Daniel L.; Kulsrud, Russell M.

    1977-01-01

    This invention provides a poloidal divertor for stacking counterstreaming ion beams to provide high intensity colliding beams. To this end, method and apparatus are provided that inject high energy, high velocity, ordered, atomic deuterium and tritium beams into a lower energy, toroidal, thermal equilibrium, neutral, target plasma column that is magnetically confined along an endless magnetic axis in a strong restoring force magnetic field having helical field lines to produce counterstreaming deuteron and triton beams that are received bent, stacked and transported along the endless axis, while a poloidal divertor removes thermal ions and electrons all along the axis to increase the density of the counterstreaming ion beams and the reaction products resulting therefrom. By balancing the stacking and removal, colliding, strong focused particle beams, reaction products and reactions are produced that convert one form of energy into another form of energy.

  8. Photonic crystal beam splitters.

    PubMed

    Chen, Chii-Chang; Chien, Hung-Da; Luan, Pi-Gang

    2004-11-20

    This work studies two-dimensional photonic crystal beam splitters with two input ports and two output ports. The beam splitter structure consists of two orthogonally crossed line defects and one point defect in square-lattice photonic crystals. The point defect is positioned at the intersection of the line defects to divide the input power into output ports. If the position and the size of the point defect are varied, the power of two output ports can be identical. The beam splitters can be used in photonic crystal Mach-Zehnder interferometers or switches. The simulation results show that a large bandwidth of the extinction ratio larger than 20 dB can be obtained while two beams are interfered in the beam splitters. This enables photonic crystal beam splitters to be used in fiber optic communication systems.

  9. Craft Stick Beams

    NASA Technical Reports Server (NTRS)

    Karplus, Alan K.

    1996-01-01

    The objective of this exercise is to provide a phenomenological 'hands-on' experience that shows how geometry can affect the load carrying capacity of a material used in construction, how different materials have different failure characteristics, and how construction affects the performance of a composite material. This will be accomplished by building beams of a single material and composite beams of a mixture of materials (popsicle sticks, fiberboard sheets, and tongue depressors); testing these layered beams to determine how and where they fail; and based on the failure analysis, designing a layered beam that will fail in a predicted manner. The students will learn the effects of lamination, adhesion, and geometry in layered beam construction on beam strength and failure location.

  10. KEKB beam instrumentation systems

    NASA Astrophysics Data System (ADS)

    Arinaga, M.; Flanagan, J.; Hiramatsu, S.; Ieiri, T.; Ikeda, H.; Ishii, H.; Kikutani, E.; Mimashi, T.; Mitsuhashi, T.; Mizuno, H.; Mori, K.; Tejima, M.; Tobiyama, M.

    2003-02-01

    For the stable high-luminosity operation and luminosity increase, the electron and positron storage rings of the KEK B-Factory (KEKB) is equipped with various beam instrumentations, which have been working well since the start of the commissioning in December, 1998. Details and performance of the beam-position monitor system based on the spectrum analysis using DSPs, the turn-by-turn BPM with four-dimensional function available for measurements of the individual bunch position, phase and intensity, the parametric beam-DCCTs designed so as to avoid the magnetic-core-selection problems for the parametric flux modulation, the bunch-by-bunch feedback system indispensable to suppress the strong multibunch instabilities in KEKB, the various optical beam diagnostic systems, such as synchrotron radiation interferometers for precise beam-size measurement, the tune meters, the bunch length monitors and the beam-loss monitors are described. Delicate machine tuning of KEKB is strongly supported by these instrumentations.

  11. Echolocating bats emit a highly directional sonar sound beam in the field.

    PubMed

    Surlykke, Annemarie; Boel Pedersen, Simon; Jakobsen, Lasse

    2009-03-01

    Bats use echolocation or biosonar to navigate and find prey at night. They emit short ultrasonic calls and listen for reflected echoes. The beam width of the calls is central to the function of the sonar, but directionality of echolocation calls has never been measured from bats flying in the wild. We used a microphone array to record sounds and determine horizontal directionality for echolocation calls of the trawling Daubenton's bat, Myotis daubentonii, flying over a pond in its natural habitat. Myotis daubentonii emitted highly directional calls in the field. Directionality increased with frequency. At 40kHz half-amplitude angle was 25 degrees , decreasing to 14 degrees at 75kHz. In the laboratory, M. daubentonii emitted less intense and less directional calls. At 55kHz half-amplitude angle was 40 degrees in the laboratory versus 20 degrees in the field. The relationship between frequency and directionality can be explained by the simple piston model. The model also suggests that the increase in the emitted intensity in the field is caused by the increased directionality, focusing sound energy in the forward direction. The bat may increase directionality by opening the mouth wider to emit a louder, narrower beam in the wild.

  12. Echolocating bats emit a highly directional sonar sound beam in the field

    PubMed Central

    Surlykke, Annemarie; Boel Pedersen, Simon; Jakobsen, Lasse

    2008-01-01

    Bats use echolocation or biosonar to navigate and find prey at night. They emit short ultrasonic calls and listen for reflected echoes. The beam width of the calls is central to the function of the sonar, but directionality of echolocation calls has never been measured from bats flying in the wild. We used a microphone array to record sounds and determine horizontal directionality for echolocation calls of the trawling Daubenton's bat, Myotis daubentonii, flying over a pond in its natural habitat. Myotis daubentonii emitted highly directional calls in the field. Directionality increased with frequency. At 40 kHz half-amplitude angle was 25°, decreasing to 14° at 75 kHz. In the laboratory, M. daubentonii emitted less intense and less directional calls. At 55 kHz half-amplitude angle was 40° in the laboratory versus 20° in the field. The relationship between frequency and directionality can be explained by the simple piston model. The model also suggests that the increase in the emitted intensity in the field is caused by the increased directionality, focusing sound energy in the forward direction. The bat may increase directionality by opening the mouth wider to emit a louder, narrower beam in the wild. PMID:19129126

  13. Hyperon beam physics

    SciTech Connect

    Cooper, P.S.

    1996-03-01

    This report reviews the present status and recent results in hyperon physics concentrating on results from high energy hyperon beam experiments performed at Fermilab over the past several years. The report focuses on hyperon production polarization, precision hyperon magnetic moment measurements and radiative decay studies. Modern charged hyperon beam experiments are characterized by {approx}100m long apparatus and hyperon beams with {gamma}{sub Y}{approx}100 and hyperon fluxes in the 1-100 kHz range.

  14. Resolving Two Beams in Beam Splitters with a Beam Position Monitor

    NASA Astrophysics Data System (ADS)

    Kurennoy, Sergey

    2002-04-01

    The beam transport system for the Advanced Hydrotest Facility (AHF) anticipates multiple beam splitters. Monitoring two transversely separated beams in a common beam pipe in the splitter sections imposes certain requirements on beam diagnostics for these sections. We explore a two-beam system in a generic beam monitor and study the feasibility of resolving the transverse positions of the two beams with one diagnostics device. Effects of unequal beam currents and of finite transverse sizes of the beams are explored analytically for both the ultra relativistic case and the long-wavelength limit.

  15. The Norwegian Earth System Model, NorESM1-M - Part 2: Climate response and scenario projections

    NASA Astrophysics Data System (ADS)

    Iversen, T.; Bentsen, M.; Bethke, I.; Debernard, J. B.; Kirkevåg, A.; Seland, Ø.; Drange, H.; Kristjansson, J. E.; Medhaug, I.; Sand, M.; Seierstad, I. A.

    2013-03-01

    NorESM is a generic name of the Norwegian earth system model. The first version is named NorESM1, and has been applied with medium spatial resolution to provide results for CMIP5 (http://cmip-pcmdi.llnl.gov/cmip5/index.html) without (NorESM1-M) and with (NorESM1-ME) interactive carbon-cycling. Together with the accompanying paper by Bentsen et al. (2012), this paper documents that the core version NorESM1-M is a valuable global climate model for research and for providing complementary results to the evaluation of possible anthropogenic climate change. NorESM1-M is based on the model CCSM4 operated at NCAR, but the ocean model is replaced by a modified version of MICOM and the atmospheric model is extended with online calculations of aerosols, their direct effect and their indirect effect on warm clouds. Model validation is presented in the companion paper (Bentsen et al., 2012). NorESM1-M is estimated to have equilibrium climate sensitivity of ca. 2.9 K and a transient climate response of ca. 1.4 K. This sensitivity is in the lower range amongst the models contributing to CMIP5. Cloud feedbacks dampen the response, and a strong AMOC reduces the heat fraction available for increasing near-surface temperatures, for evaporation and for melting ice. The future projections based on RCP scenarios yield a global surface air temperature increase of almost one standard deviation lower than a 15-model average. Summer sea-ice is projected to decrease considerably by 2100 and disappear completely for RCP8.5. The AMOC is projected to decrease by 12%, 15-17%, and 32% for the RCP2.6, 4.5, 6.0, and 8.5, respectively. Precipitation is projected to increase in the tropics, decrease in the subtropics and in southern parts of the northern extra-tropics during summer, and otherwise increase in most of the extra-tropics. Changes in the atmospheric water cycle indicate that precipitation events over continents will become more intense and dry spells more frequent. Extra

  16. Indole Alkaloids of Alstonia angustifolia var. latifolia as Green Inhibitor for Mild Steel Corrosion in 1 M HCl Media

    NASA Astrophysics Data System (ADS)

    Raja, Pandian Bothi; Qureshi, Ahmad Kaleem; Rahim, Afidah Abdul; Awang, Khalijah; Mukhtar, Mat Ropi; Osman, Hasnah

    2013-04-01

    The inhibition effect of mild steel (MS) corrosion in 1 M HCl was studied by the addition of indole alkaloids (crude) isolated from Alstonia angustifolia var. latifolia ( A. latifolia) leaves at 303 K. Potentiodynamic polarization, impedance spectroscopy, scanning electron microscopy (SEM), and Fourier transform infrared (FTIR) analyses were used for this study. Results show that the isolated alkaloid extract of A. latifolia is a good inhibitor and exhibited maximum inhibition efficiency (above 80%) at concentrations between 3 and 5 mg/L. Polarization measurements indicated that the inhibitor does not alter the mechanism of either anodic or cathodic reactions and acted as mixed-type inhibitor. The inhibition efficiencies of both electrochemical techniques are found to be in good agreement and adsorption of inhibitor follows Langmuir isotherm. Adsorption of inhibitor over metal surface was well supported by the SEM studies, while FTIR studies evidenced the presence of indole alkaloids as green inhibitor that reduces the rate of corrosion.

  17. Corrosion inhibition of Eleusine aegyptiaca and Croton rottleri leaf extracts on cast iron surface in 1 M HCl medium

    NASA Astrophysics Data System (ADS)

    Rajeswari, Velayutham; Kesavan, Devarayan; Gopiraman, Mayakrishnan; Viswanathamurthi, Periasamy; Poonkuzhali, Kaliyaperumal; Palvannan, Thayumanavan

    2014-09-01

    The adsorption and corrosion inhibition activities of Eleusine aegyptiaca (E. aegyptiaca) and Croton rottleri (C. rottleri) leaf extracts on cast iron corrosion in 1 M hydrochloric acid solution were studied first time by weight loss and electrochemical techniques viz., Tafel polarization and electrochemical impedance spectroscopy. The results obtained from the weight loss and electrochemical methods showed that the inhibition efficiency increased with inhibitor concentrations. It was found that the extracts acted as mixed-type inhibitors. The addition of halide additives (KCl, KBr, and KI) on the inhibition efficiency has also been investigated. The adsorption of the inhibitors on cast iron surface both in the presence and absence of halides follows the Langmuir adsorption isotherm model. The inhibiting nature of the inhibitors was supported by FT-IR, UV-vis, Wide-angle X-ray diffraction and SEM methods.

  18. Unilateral supraorbital keyhole approach in patients with middle cerebral artery (M1-M2 segment) symmetrical aneurysms.

    PubMed

    Martellotta, N; Gigante, N; Toscano, S; Maddalena, G F; Tripodi, M; Settembrini, G; Stroscio, C; Distefano, G; Citro, E

    2003-08-01

    A left middle cerebral artery aneurysm at the bifurcation (M1-M2 segment) and a right smaller aneurysm, symmetrical to the previous one were diagnosed in a 69-year-old female after angiographic examination for subarachnoid hemorrhage. The preoperative radiological study did not enable us to identify the bleeding aneurysm so a left supraorbital keyhole approach was performed to operate on the bigger aneurysm. In the same surgical session, using the same way of approach, we decided to attack also the right aneurysm which then revealed itself as being responsible for bleeding. The postoperative angiograms confirmed the complete exclusion of both aneurysms and the patient was discharged after good recovery. Although there are remarkable controversies about the surgical strategies for multiple aneurysms, our experience gives us the opportunity to emphasize the supraorbital keyhole approach and to reconsider the "timing" of multiple/bilateral aneurysms.

  19. The effect of some triazole derivatives as inhibitors for the corrosion of mild steel in 1 M hydrochloric acid

    NASA Astrophysics Data System (ADS)

    Zhang, Shengtao; Tao, Zhihua; Li, Weihua; Hou, Baorong

    2009-05-01

    Corrosion inhibition by some new triazole derivatives on mild steel in 1 M hydrochloric acid solutions has been investigated by weight loss test, electrochemical measurement, scanning electronic microscope analysis and quantum chemical calculations. The results indicate that these compounds act as mixed-type inhibitors retarding the anodic and cathodic corrosion reactions and do not change the mechanism of either hydrogen evolution reaction or mild steel dissolution. The studied compounds following the Langmuir adsorption isotherm, and the thermodynamic parameters were determined and discussed. The effect of molecular structure on the inhibition efficiency has been investigated by ab initio quantum chemical calculations. The electronic properties such as highest occupied molecular orbital (HOMO), lowest unoccupied molecular orbital (LUMO) energy levels, energy gap (LUMO-HOMO), dipole moment and molecular orbital densities were calculated.

  20. (Pulsed electron beam precharger)

    SciTech Connect

    Finney, W.C.; Shelton, W.N.

    1990-01-01

    This report discusses the following topics on electron beam guns: Precharger Modification; Installation of Charge vs. Radius Apparatus; High Concentration Aerosol Generation; and Data Acquisition and Analysis System.

  1. Power beaming options

    NASA Technical Reports Server (NTRS)

    Rather, John D. G.

    1989-01-01

    Some large scale power beaming applications are proposed for the purpose of stimulating research. The first proposal is for a combination of large phased arrays on the ground near power stations and passive reflectors in geostationary orbit. The systems would beam excess electrical power in microwave form to areas in need of electrical power. Another proposal is to build solar arrays in deserts and beam the energy around the world. Another proposal is to use lasers to beam energy from earth to orbiting spacecraft.

  2. ALEX neutral beam probe

    SciTech Connect

    Pourrezaei, K.

    1982-01-01

    A neutral beam probe capable of measuring plasma space potential in a fully 3-dimensional magnetic field geometry has been developed. This neutral beam was successfully used to measure an arc target plasma contained within the ALEX baseball magnetic coil. A computer simulation of the experiment was performed to refine the experimental design and to develop a numerical model for scaling the ALEX neutral beam probe to other cases of fully 3-dimensional magnetic field. Based on this scaling a 30 to 50 keV neutral cesium beam probe capable of measuring space potential in the thermal barrier region of TMX Upgrade was designed.

  3. Broad beam ion implanter

    DOEpatents

    Leung, K.N.

    1996-10-08

    An ion implantation device for creating a large diameter, homogeneous, ion beam is described, as well as a method for creating same, wherein the device is characterized by extraction of a diverging ion beam and its conversion by ion beam optics to an essentially parallel ion beam. The device comprises a plasma or ion source, an anode and exit aperture, an extraction electrode, a divergence-limiting electrode and an acceleration electrode, as well as the means for connecting a voltage supply to the electrodes. 6 figs.

  4. Broad beam ion implanter

    DOEpatents

    Leung, Ka-Ngo

    1996-01-01

    An ion implantation device for creating a large diameter, homogeneous, ion beam is described, as well as a method for creating same, wherein the device is characterized by extraction of a diverging ion beam and its conversion by ion beam optics to an essentially parallel ion beam. The device comprises a plasma or ion source, an anode and exit aperture, an extraction electrode, a divergence-limiting electrode and an acceleration electrode, as well as the means for connecting a voltage supply to the electrodes.

  5. Magnetic beam position monitor

    SciTech Connect

    Varfolomeev, A.A.; Ivanchenkov, S.N.; Khlebnikov, A.S.

    1995-12-31

    Many nondestructive beam position monitors are known. However, these devices can not be used for DC particle beam diagnostics. We investigated a method of beam diagnostics applicable for the operative control of DC high power e-beam inside closed waveguide. A design of the detector for determination of{open_quote} center of mass {close_quote} position of DC particle beam was developed. It was shown that the monitor can be used as a nondestructive method for the beam position control in resonators. Magnetic field of the particle beam outside a resonator is used. The detector consists of the steel yokes and magnetic field sensors. The sensors measure magnetic fluxes in the steel yokes fixed outside the resonator. When the particle beam changes its position, these magnetic fluxes also change. Beam displacement sensitivity of the monitor depends on the steel yoke dimensions. The detector sensitivity is equal to 1 Gauss/mm for the conditions adequate to the FOM-FEM project.

  6. Long-Range Beam-Beam Compensation in RHIC

    SciTech Connect

    Kim, Hyung Jin; Sen, Tanaji; Fischer, Wolfram; /Brookhaven

    2010-05-01

    In order to avoid the effects of long-range beam-beam interactions which produce beam blow-up and deteriorate beam life time, a compensation scheme with current carrying wires has been proposed. Two long-range beam-beam compensators were installed in RHIC rings in 2006. The effects of the compensators have been experimentally investigated. An indication was observed that the compensators are beneficial to beam life time in measurements performed in RHIC during 2009. In this paper, we report the effects of wire compensator on beam loss and emittance for proton-proton beams at collision energy.

  7. Computational challenges for beam-beam simulation for RHIC

    SciTech Connect

    Luo, Y.; Fischer, W.

    2010-10-01

    In this article we will review the computational challenges in the beam-beam simulation for the polarized proton run of the Relativistic Heavy Ion Collider (RHIC). The difficulties in our multi-particle and million turn tracking to calculate the proton beam lifetime and proton beam emittance growth due to head-on beam-beam interaction and head-on beam-beam compensation are presented and discussed. Solutions to obtain meaningful physics results from these trackings are proposed and tested. In the end we will present the progress in the benchmarking of the RHIC operational proton beam lifetime.

  8. Dissociation of SERPINE1 mRNA from the translational repressor proteins Ago2 and TIA-1 upon platelet activation.

    PubMed

    Corduan, Aurélie; Plé, Hélène; Laffont, Benoit; Wallon, Thérèse; Plante, Isabelle; Landry, Patricia; Provost, Patrick

    2015-05-01

    Platelets play an important role in haemostasis, as well as in thrombosis and coagulation processes. They harbour a wide variety of messenger RNAs (mRNAs), that can template de novo protein synthesis, and an abundant array of microRNAs, which are known to mediate mRNA translational repression through proteins of the Argonaute (Ago) family. The relationship between platelet microRNAs and proteins capable of mediating translational repression, however, remains unclear. Here, we report that half of platelet microRNAs is associated to mRNA-regulatory Ago2 protein complexes, in various proportions. Associated to these Ago2 complexes are platelet mRNAs known to support de novo protein synthesis. Reporter gene activity assays confirmed the capacity of the platelet microRNAs, found to be associated to Ago2 complexes, to regulate translation of these platelet mRNAs through their 3'UTR. Neither the microRNA repertoire nor the microRNA composition of Ago2 complexes of human platelets changed upon activation with thrombin. However, under conditions favoring de novo synthesis of Plasminogen Activator Inhibitor-1 (PAI-1) protein, we documented a rapid dissociation of the encoding platelet SERPINE1 mRNA from Ago2 protein complexes as well as from the translational repressor protein T-cell-restricted intracellular antigen-1 (TIA-1). These findings are consistent with a scenario by which lifting of the repressive effects of Ago2 and TIA-1 protein complexes, involving a rearrangement of proteinmRNA complexes rather than disassembly of Ago2microRNA complexes, would allow translation of SERPINE1 mRNA into PAI-1 in response to platelet activation. PMID:25673011

  9. Developmental, regional, and cellular expression of SFT/UbcH5A and DMT1 mRNA in brain.

    PubMed

    Knutson, Mitchell; Menzies, Sharon; Connor, James; Wessling-Resnick, Marianne

    2004-06-01

    Brain iron has marked developmental, regional, and cellular distribution patterns. To characterize better the potential mechanisms for iron transport into and within the brain, we have analyzed expression patterns of two factors: divalent metal transporter 1 (DMT1) and stimulator of Fe transport (SFT). DMT1 is known to participate in brain iron uptake although functional information is lacking. Even less clear is the possible role of SFT, which is related to a member of the ubiquitin-conjugating E2 family UbcH5A, but previous studies have found SFT/Ubc5Ha mRNA expressed abundantly in mouse brain. Like DMT1, SFT function has been implicated in transferrin and nontransferrin-bound iron uptake. Comparative Northern analysis indicates that SFT/UbcH5A mRNA levels are threefold higher in 3-day-old mice than at later ages, whereas levels of DMT1 mRNA do not change. In situ analysis of neonatal mouse brain reveals prominent SFT/UbcH5A mRNA expression in epithelial and ependymal cells in the choroid plexus and neurons of the olfactory bulb, hippocampus, and cortex. Adult mouse brain expresses SFT/UbcH5A mRNA mainly in white matter of the cerebellum and pons. Using a multiple tissue expression (MTE) array containing 20 different human brain regions, the highest levels of both SFT/UbcH5A and DMT1 mRNA are detected in the corpus callosum and cerebellum. The significantly elevated levels of SFT/UbcH5A mRNA in the neonatal mouse and its localization to choroid plexus, a major site of brain iron acquisition, suggest that this factor may contribute to the rapid rate of brain iron uptake that occurs in the early postnatal period.

  10. A novel RNA binding protein that interacts with NMDA R1 mRNA: regulation by ethanol.

    PubMed

    Anji, Antje; Kumari, Meena

    2006-05-01

    Excitatory NMDA receptors are an important target of ethanol. Chronic ethanol exposure, in vivo and in vitro, increases polypeptide levels of NR1 subunit, the key subunit of functional NMDA receptors. In vitro, chronic ethanol treatment increases the half-life of NR1 mRNA and this observation is dependent on new protein synthesis. The present study was undertaken to locate cis-acting region(s) within the NR1 3'-untranslated region (UTR) and identify NR1 3'-UTR binding trans-acting proteins expressed in mouse fetal cortical neurons. Utilizing RNA gel shift assays we identified a 156-nt cis-acting region that binds to polysomal trans-acting proteins. This binding was highly specific as inclusion of cyclophilin RNA or tRNA did not interfere with cis-trans interactions. Importantly, the 3'-UTR binding activity was significantly up-regulated in the presence of ethanol. UV cross-link analysis detected three NR1 3'-UTR binding proteins and their molecular mass calculated by Northwestern analysis was approximately 88, 60 and 47 kDa, respectively. Northwestern analysis showed a significant up-regulation of the 88-kDa protein after chronic ethanol treatment. The 88-kDa protein was purified and identified by tandem mass spectrometry as the beta subunit of alpha glucosidase II (GIIbeta). That GIIbeta is indeed a trans-acting protein and binds specifically to 3'-UTR of NR1 mRNA was confirmed by RNA gel mobility supershift assays and immuno RT-PCR. Western blotting data established a significant increase of GIIbeta polypeptide in chronic ethanol-exposed fetal cortical neurons. We hypothesize that the identified cis-acting region and the associated RNA-binding proteins are important regulators of NR1 subunit gene expression.

  11. Gad1 mRNA as a reliable indicator of altered GABA release from orexigenic neurons in the hypothalamus

    PubMed Central

    Dicken, Matthew S.; Hughes, Alexander R.; Hentges, Shane T.

    2016-01-01

    The strength of γ-aminobutyric acid (GABA)-mediated inhibitory synaptic input is a principle determinant of neuronal activity. However, because of differences in the number of GABA afferent inputs and the sites of synapses, it is difficult to directly assay for altered GABA transmission between specific cells. The present study tested the hypothesis that the level of mRNA for the GABA synthetic enzyme glutamate decarboxylase (GAD) can provide a reliable proxy for GABA release. This was tested in a mouse hypothalamic circuit important in the regulation of energy balance. Fluorescent in situ hybridization results show that the expression of Gad1 mRNA (encoding the GAD67 enzyme) was increased in hypothalamic neuropeptide Y/agouti-related peptide (NPY/AgRP) neurons after an overnight fast, consistent with the ability of GABA from these neurons to stimulate food intake. Optogenetic studies confirmed that the observed increase in Gad1 mRNA correlated with an increase in the probability of GABA release from NPY/AgRP neurons onto downstream proopiomelanocortin neurons. Likewise, there was an increase in the readily releasable pool of GABA in NPY/AgRP neurons. Selective inhibition of GAD activity in NPY/AgRP neurons decreased GABA release, indicating that GAD67 activity, which is largely dictated by expression level, is a key determinant of GABA release. Altogether, it appears that Gad expression may be a reliable proxy of altered GABAergic transmission. Examining changes in Gad mRNA as a proxy for GABA release may be particularly helpful when the downstream targets are not known or when limited tools exist for detecting GABA release at a particular synapse. PMID:26370162

  12. Glutathione S-transferase T1, M1 and P1 Genetic Polymorphisms and Susceptibility to Colorectal Cancer in Turkey.

    PubMed

    Gorukmez, Ozlem; Yakut, Tahsin; Gorukmez, Orhan; Sag, Sebnem Ozemri; Topak, Ali; Sahinturk, Serdar; Kanat, Ozkan

    2016-01-01

    Colorectal cancer (CRC) is reported to be the third most common cancer worldwide and the fourth most common cause of cancer related deaths. CRC is considered to be a multifactorial disease whose risk varies due to the complex interaction between individual genetic basis and exposure to multiple endogenous factors. Glutathione S-transferases are pro-carcinogenic in CRC and are required for the conjugation between chemotherapeutics and broad spectrum xenobiotics. One hundred and eleven patients with CRC and 128 control subjects without any cancer history were enrolled in this study. Multiplex PCR was applied to determine polymorphisms for the GSTT1 and M1 genes, and PCR-RFLP was applied for the GSTP1 (Ile105Val) gene polymorphism. Values <0.05 were defined as statistically significant. We detected a significant high correlation between predisposition for CRC and presence of the Ile/Ile genotype of the GSTP1 (IIe105Val) gene polymorphism, but we did not find a significant relationship between predisposition for CRC and GSTT1 and M1 deletion polymorphisms. In addition, we did not determine a relationship between GSTT1, M1 and P1 gene polymorphisms and any clinicopathological features of CRC. GSTT1 null/GSTM1 positive and GSTT1 null/GSTM1 positive/GSTP1 Ile/ Ile genotypes were significantly higher in the patient group. Our results revealed that there is no relationship among CRC, its clinicopathologic features, and GSTT1 M1 gene polymorphisms. However, there was a significant correlation between CRC and the GSTP1 Ile/Ile genotype. Further studies with larger patient groups are required to delineate the relationships between GST gene polymorphisms and the clinicopathologic features of CRC in Turkey. PMID:27644629

  13. Troposphere - ionosphere coupling: results of the ground based observations in Antarctica and perspective for "Sich-1M" satellite experiment

    NASA Astrophysics Data System (ADS)

    Lizunov, G.; Yampolski, Yu.; Korepanov, V.; Lytvynenko, L.; Zalizovsky, A.

    The impact of meteorological processes upon the ionosphere cannot be ignored in conceptual space weather models. The giant energy stored in motion of tropospheric air masses (weather fronts, cyclones, stream jets, penetrating convection, etc) serves as a powerful source of upward energy fluxes propagating from the lower to upper atmosphere. The prospective energy carrier might be associated with the middle-scale atmospheric gravity waves (AGW) traveling upwards to the ionospheric heights and producing the effects known as traveling ionospheric disturbances (TID's). We present the results of detailed experimental and theoretical study of these phenomena. The original data had been provided by experiments in the region of high meteorological activity, namely Antarctic coast of the Drake Passage, where the Ukrainian Antarctic station " Akademik Vernadsky" is located (UK's "Michael Faraday" till 1996). The permanent data sets were collected over the seven years from 1996 till 2002. The passing atmospheric fronts were in most cases accompanied by excitation of middle-scale AGW's and quasiperiodic variations of magnetic field components, showing the same time periods as the atmospheric pressure. As follows from the cross-correlation analysis of the magnetic field and pressure variations, the magnetic field normally lagged behind the pressure by few tens minutes. On this base we elaborate a quantitative model describing the AGW excitation by weather fronts, AGW propagation to the upper atmosphere and generation of geomagnetic pulsation in the ionospheric dynamo-region. We expect to carry out further experiments onboard Ukrainian remote sensing satellite "Sich-1M" (launch in 2004), which payload contains optical and radar equipment allowing to detect weather systems as well as a set of electromagnetic sensors ("Variant" experiment" for registration of the fine structure of fields and currents in the ionosphere. We are going to compare a ground based meteorological and

  14. ALDH1A1 mRNA expression in association with prognosis of triple-negative breast cancer

    PubMed Central

    Liu, Yan; Baglia, Michelle; Zheng, Ying; Blot, William; Bao, Ping-Ping; Cai, Hui; Nechuta, Sarah; Zheng, Wei; Cai, Qiuyin; Shu, Xiao Ou

    2015-01-01

    ALDH1 is a crucial element in the retinoic acid signaling pathway regulating the self-renewal and differentiation of normal stem cells, and may play an important role in cancer progression. However, research on ALDH1 gene expressionand breast cancer prognosis has yielded conflicting results. We evaluated the association between tumor tissue ALDH1A1/ALDH1A3 mRNA expression and triple-negative breast cancer (TNBC) prognosis in the Shanghai Breast Cancer Survival Study (SBCSS, N=463), Nashville Breast Health Study (NBHS, N=86), and Southern Community Cohort Study (SCCS, N=47). Gene expression was measured in RNA isolated from breast cancer tissues. In the SBCSS, higher ALDH1A1 mRNA level was associated with improved disease-free (HR=0.87, 95% CI: 0.80-0.95, per log unit change) and overall survival (HR=0.85, 95% CI: 0.78-0.93 per log unit change) independent of age at diagnosis, TNM stage and treatment. We replicated the findings for overall survival in the NBHS and SCCS (HR = 0.27, 95% CI: 0.10-0.73) and for disease-free survival by a meta-analysis of four publicly-available gene expression datasets (HR = 0.86, 95% CI: 0.76-0.97). No significant association was found for ALDH1A3. Our study suggests high expression of ALDH1A1 mRNA in tumor tissues may be an independent predictor of a favorable TNBC outcome. PMID:26462023

  15. Hermite-Gaussian beams with self-forming spiral phase distribution

    NASA Astrophysics Data System (ADS)

    Zinchik, Alexander A.; Muzychenko, Yana B.

    2014-05-01

    Spiral laser beams is a family of laser beams that preserve the structural stability up to scale and rotate with the propagation. Properties of spiral beams are of practical interest for laser technology, medicine and biotechnology. Researchers use a spiral beams for movement and manipulation of microparticles. Spiral beams have a complicated phase distribution in cross section. This paper describes the results of analytical and computer simulation of Hermite-Gaussian beams with self-forming spiral phase distribution. In the simulation used a laser beam consisting of the sum of the two modes HG TEMnm and TEMn1m1. The coefficients n1, n, m1, m were varied. Additional phase depending from the coefficients n, m, m1, n1 imposed on the resulting beam. As a result, formed the Hermite Gaussian beam phase distribution which takes the form of a spiral in the process of distribution. For modeling was used VirtualLab 5.0 (manufacturer LightTrans GmbH).

  16. Bioaccumulation of arsenic and selenium in bycatch fishes Diapterus peruvianus, Pseudupeneus grandisquamis, and Trachinotus kennedyi from shrimp trawling in the continental shelf of Guerrero, México.

    PubMed

    Spanopoulos-Zarco, Pamela; Ruelas-Inzunza, Jorge; Jara-Marini, Martín Enrique; Meza-Montenegro, Mercedes

    2015-11-01

    With the aim of determining arsenic (As) and selenium (Se) concentrations in bycatch fishes from SW Mexico and comparing elemental concentrations with limits for human consumption set in the national and international legislation, three fish species (Diapterus peruvianus, Pseudupeneus grandisquamis, and Trachinotus kennedyi) were collected from Guerrero state during trawling operations. Additionally, As and Se levels in muscle tissue were compared with similar species from diverse areas. The order of As and Se concentrations was T. kennedyi>P. grandisquamis>D. peruvianus. In Mexico, there is no regulation of As and Se levels in fish. In comparison to the legal limit (0.1 μg g(-1) wet weight) set by legislation in Venezuela, As levels in the edible portion of T. kennedyi (0.632 μg g(-1) wet weight), P. grandisquamis (0.166 μg g(-1) wet weight), and D. peruvianus (0.157 μg g(-1) wet weight) were above this limit. In the case of Se, average concentrations in T. kennedyi (0.323 μg g(-1) wet weight) were above the maximum permissible limit (0.30 μg g(-1) wet weight) set in the Chilean legislation. Se concentrations in Carangoides bajad from Saudi Arabia were comparable to values in T. kennedyi (this study). In relation to As, concentrations varied in magnitude orders; the highest As concentration (range 10.35 to 23.71 μg g(-1) wet weight) corresponded to Mullus barbatus from the Iberian Mediterranean.

  17. Influence of the hydrodynamic conditions on the accessibility of Aristeus antennatus and other demersal species to the deep water trawl fishery off the Balearic Islands (western Mediterranean)

    NASA Astrophysics Data System (ADS)

    Amores, Angel; Rueda, Lucía; Monserrat, Sebastià; Guijarro, Beatriz; Pasqual, Catalina; Massutí, Enric

    2014-10-01

    Monthly catches per unit of effort (CPUE) of adult red shrimp (Aristeus antennatus), reported in the deep water bottom trawl fishery developed on the Sóller fishing ground off northern Mallorca (Western Mediterranean), and the mean ocean surface vorticity in the surrounding areas are compared between 2000 and 2010. A good correlation is found between the rises in the surrounding surface vorticity and the drops in the CPUE of the adult red shrimp. This correlation could be explained by assuming that most of the surface vorticity episodes could reach the bottom, increasing the seabed velocities and producing sediment resuspension, which could affect the near bottom water turbidity. A. antennatus would respond to this increased turbidity disappearing from the fishing grounds, probably moving downwards to the deeper waters. This massive displacement of red shrimp specimens away from the fishing grounds would consequently decrease their accessibility to fishing exploitation. Similar although more intense responses have been observed during the downslope shelf dense water current episodes that occurred in a submarine canyon, northeast of the Iberian peninsula. The proposed mechanism suggesting how the surface vorticity observed can affect the bottom sediments is investigated using a year-long moored near-bottom current meter and a sediment trap moored near the fishing grounds. The relationship between vorticity and catches is also explored for fish species (Galeus melastomus, Micromesistius poutassou, Phycis blennoides) and other crustacean (Geryon longipes and Nephrops norvegicus), considered as by-catch of the deep water fishery in the area. Results appear to support the suggestion that the water turbidity generated by the vorticity episodes is significant enough to affect the dynamics of the demersal species.

  18. Indexing the relative abundance of age-0 white sturgeons in an impoundment of the lower Columbia River from highly skewed trawling data

    USGS Publications Warehouse

    Counihan, T.D.; Miller, A.I.; Parsley, M.J.

    1999-01-01

    The development of recruitment monitoring programs for age-0 white sturgeons Acipenser transmontanus is complicated by the statistical properties of catch-per-unit-effort (CPUE) data. We found that age-0 CPUE distributions from bottom trawl surveys violated assumptions of statistical procedures based on normal probability theory. Further, no single data transformation uniformly satisfied these assumptions because CPUE distribution properties varied with the sample mean (??(CPUE)). Given these analytic problems, we propose that an additional index of age-0 white sturgeon relative abundance, the proportion of positive tows (Ep), be used to estimate sample sizes before conducting age-0 recruitment surveys and to evaluate statistical hypothesis tests comparing the relative abundance of age-0 white sturgeons among years. Monte Carlo simulations indicated that Ep was consistently more precise than ??(CPUE), and because Ep is binomially rather than normally distributed, surveys can be planned and analyzed without violating the assumptions of procedures based on normal probability theory. However, we show that Ep may underestimate changes in relative abundance at high levels and confound our ability to quantify responses to management actions if relative abundance is consistently high. If data suggest that most samples will contain age-0 white sturgeons, estimators of relative abundance other than Ep should be considered. Because Ep may also obscure correlations to climatic and hydrologic variables if high abundance levels are present in time series data, we recommend ??(CPUE) be used to describe relations to environmental variables. The use of both Ep and ??(CPUE) will facilitate the evaluation of hypothesis tests comparing relative abundance levels and correlations to variables affecting age-0 recruitment. Estimated sample sizes for surveys should therefore be based on detecting predetermined differences in Ep, but data necessary to calculate ??(CPUE) should also be

  19. Reproductive parameters of rhinobatid and urolophid batoids taken as by-catch in the Queensland (Australia) east coast otter-trawl fishery.

    PubMed

    Kyne, P M; Courtney, A J; Jacobsen, I P; Bennett, M B

    2016-08-01

    Reproductive variables are provided for batoids regularly taken as by-catch in the east coast otter-trawl fishery on the inner-mid continental shelf off the south-east and central coasts of Queensland, Australia. Total length at maturity (LT50 and 95% c.i.) for the eastern shovelnose ray Aptychotrema rostrata was 639·5 mm (617·6-663·4 mm) for females and 597·3 mm (551·4-648·6 mm) for males. Litter size (n = 9) ranged from nine to 20 (mean ± s.e. = 15·1 ± 1·2). This species exhibited a positive litter size-maternal size relationship. Disc width at maturity (WD50 and 95% c.i.) for the common stingaree Trygonoptera testacea was 162·7 mm (155·8-168·5 mm) for females and 145·9 mm (140·2-150·2 mm) for males. Gravid T. testacea (n = 6) each carried a single egg in the one functional (left) uterus. Disc width at maturity (WD50 and 95% c.i.) for the Kapala stingaree Urolophus kapalensis was 153·7 mm (145·1-160·4 mm) for females and 155·2 mm (149·1-159·1 mm) for males. Gravid U. kapalensis (n = 16) each carried a single egg or embryo in the one functional (left) uterus. A single female yellowback stingaree Urolophus sufflavus carried an embryo in each uterus. A global review of the litter sizes of shovelnose rays (Rhinobatidae) and stingarees (Urolophidae) is provided.

  20. Bioaccumulation of arsenic and selenium in bycatch fishes Diapterus peruvianus, Pseudupeneus grandisquamis, and Trachinotus kennedyi from shrimp trawling in the continental shelf of Guerrero, México.

    PubMed

    Spanopoulos-Zarco, Pamela; Ruelas-Inzunza, Jorge; Jara-Marini, Martín Enrique; Meza-Montenegro, Mercedes

    2015-11-01

    With the aim of determining arsenic (As) and selenium (Se) concentrations in bycatch fishes from SW Mexico and comparing elemental concentrations with limits for human consumption set in the national and international legislation, three fish species (Diapterus peruvianus, Pseudupeneus grandisquamis, and Trachinotus kennedyi) were collected from Guerrero state during trawling operations. Additionally, As and Se levels in muscle tissue were compared with similar species from diverse areas. The order of As and Se concentrations was T. kennedyi>P. grandisquamis>D. peruvianus. In Mexico, there is no regulation of As and Se levels in fish. In comparison to the legal limit (0.1 μg g(-1) wet weight) set by legislation in Venezuela, As levels in the edible portion of T. kennedyi (0.632 μg g(-1) wet weight), P. grandisquamis (0.166 μg g(-1) wet weight), and D. peruvianus (0.157 μg g(-1) wet weight) were above this limit. In the case of Se, average concentrations in T. kennedyi (0.323 μg g(-1) wet weight) were above the maximum permissible limit (0.30 μg g(-1) wet weight) set in the Chilean legislation. Se concentrations in Carangoides bajad from Saudi Arabia were comparable to values in T. kennedyi (this study). In relation to As, concentrations varied in magnitude orders; the highest As concentration (range 10.35 to 23.71 μg g(-1) wet weight) corresponded to Mullus barbatus from the Iberian Mediterranean. PMID:26497560

  1. Reproductive parameters of rhinobatid and urolophid batoids taken as by-catch in the Queensland (Australia) east coast otter-trawl fishery.

    PubMed

    Kyne, P M; Courtney, A J; Jacobsen, I P; Bennett, M B

    2016-08-01

    Reproductive variables are provided for batoids regularly taken as by-catch in the east coast otter-trawl fishery on the inner-mid continental shelf off the south-east and central coasts of Queensland, Australia. Total length at maturity (LT50 and 95% c.i.) for the eastern shovelnose ray Aptychotrema rostrata was 639·5 mm (617·6-663·4 mm) for females and 597·3 mm (551·4-648·6 mm) for males. Litter size (n = 9) ranged from nine to 20 (mean ± s.e. = 15·1 ± 1·2). This species exhibited a positive litter size-maternal size relationship. Disc width at maturity (WD50 and 95% c.i.) for the common stingaree Trygonoptera testacea was 162·7 mm (155·8-168·5 mm) for females and 145·9 mm (140·2-150·2 mm) for males. Gravid T. testacea (n = 6) each carried a single egg in the one functional (left) uterus. Disc width at maturity (WD50 and 95% c.i.) for the Kapala stingaree Urolophus kapalensis was 153·7 mm (145·1-160·4 mm) for females and 155·2 mm (149·1-159·1 mm) for males. Gravid U. kapalensis (n = 16) each carried a single egg or embryo in the one functional (left) uterus. A single female yellowback stingaree Urolophus sufflavus carried an embryo in each uterus. A global review of the litter sizes of shovelnose rays (Rhinobatidae) and stingarees (Urolophidae) is provided. PMID:27238204

  2. A merging preaccelerator for high current H - ion beams

    NASA Astrophysics Data System (ADS)

    Inoue, T.; Miyamoto, K.; Mizuno, M.; Okumura, Y.; Ohara, Y.; Ackerman, G. D.; Chan, C. F.; Cooper, W. S.; Kwan, J. W.; Vella, M. C.

    1995-07-01

    The high power ion beams used in the next generation thermonuclear fusion reactors require high current negative ion beams accelerated to high energy, with high efficiency. One way to meet these requirements is to merge multiple low current density H- beamlets into a single high current beam. The feasibility of a high current merging preaccelerator was demonstrated in this experiment by merging 19 beamlets of H- ions distributed over a circular area 80 mm in diameter from a Japan Atomic Energy Research Institute negative ion source. H- ions were extracted at a current density exceeding 10 mA/cm2 at the ion source which operates at 0.13 Pa (1 mTorr), with a low arc power density (70 V×250 A). Spherically curved grids (with built-in magnetic electron suppression) were used in the preaccelerator to focus the extracted beamlets into a single 104 mA, 100 keV beam. The merged beam has a diameter of 23 mm and a converging angle of ±30 mrad at the beam envelope. The rms emittance of the 104 mA merging beam was 1.00 π mrad cm, which is a condition acceptable to the electrostatic quadropole accelerator for further acceleration.

  3. Implementation of depolarization due to beam-beam effects in the beam-beam interaction simulation tool GUINEA-PIG++

    NASA Astrophysics Data System (ADS)

    Rimbault, C.; Le Meur, G.; Blampuy, F.; Bambade, P.; Schulte, D.

    2009-12-01

    Depolarization is a new feature in the beam-beam simulation tool GUINEA-PIG++ (GP++). The results of this simulation are studied and compared with another beam-beam simulation tool, CAIN, considering different beam parameters for the International Linear Collider (ILC) with a centre-of-mass energy of 500 GeV.

  4. Construction of eukaryotic expression vector with mBD1-mBD3 fusion genes and exploring its activity against influenza A virus.

    PubMed

    Li, Wanyi; Feng, Yan; Kuang, Yu; Zeng, Wei; Yang, Yuan; Li, Hong; Jiang, Zhonghua; Li, Mingyuan

    2014-01-01

    Influenza (flu) pandemics have exhibited a great threat to human health throughout history. With the emergence of drug-resistant strains of influenza A virus (IAV), it is necessary to look for new agents for treatment and transmission prevention of the flu. Defensins are small (2-6 kDa) cationic peptides known for their broad-spectrum antimicrobial activity. Beta-defensins (β-defensins) are mainly produced by barrier epithelial cells and play an important role in attacking microbe invasion by epithelium. In this study, we focused on the anti-influenza A virus activity of mouse β-defensin 1 (mBD1) and β defensin-3 (mBD3) by synthesizing their fusion peptide with standard recombinant methods. The eukaryotic expression vectors pcDNA3.1(+)/mBD1-mBD3 were constructed successfully by overlap-PCR and transfected into Madin-Darby canine kidney (MDCK) cells. The MDCK cells transfected by pcDNA3.1(+)/mBD1-mBD3 were obtained by G₄₁₈ screening, and the mBD1-mBD3 stable expression pattern was confirmed in MDCK cells by RT-PCR and immunofluorescence assay. The acquired stable transfected MDCK cells were infected with IAV (A/PR/8/34, H1N1, 0.1 MOI) subsequently and the virus titers in cell culture supernatants were analyzed by TCID5₅₀ 72 h later. The TCID₅₀ titer of the experimental group was clearly lower than that of the control group (p < 0.001). Furthermore, BALB/C mice were injected with liposome-encapsulated pcDNA3.1(+)/mBD1-mBD3 through muscle and then challenged with the A/PR/8/34 virus. Results showed the survival rate of 100% and lung index inhibitory rate of 32.6% in pcDNA3.1(+)/mBD1-mBD3group; the TCID₅₀ titer of lung homogenates was clearly lower than that of the control group (p < 0.001). This study demonstrates that mBD1-mBD3 expressed by the recombinant plasmid pcDNA3.1(+)/mBD1-mBD3 could inhibit influenza A virus replication both in vitro and in vivo. These observations suggested that the recombinant mBD1-mBD3 might be developed into an agent

  5. Preferential synthesis of the G1m(1) allotype of IgG1 in the central nervous system of multiple sclerosis patients.

    PubMed

    Salier, J P; Goust, J M; Pandey, J P; Fudenberg, H H

    1981-09-18

    Quantitations of the G1m(1) and G1m(3) allotypic determinants of human immunoglobulin G were performed by radioimmunoassay on cerebrospinal fluid and serum samples from patients with multiple sclerosis and from patients with other neurological disorders. In multiple sclerosis patients that were heterozygous for these determinants, G1m(1) concentration in the cerebrospinal fluid was greatly increased-reflected by an increased ratio of G1m(1)-in comparison with that of patients with other neurological disorders. These results suggest that in the heterozygous multiple sclerosis patients, most of the plasma cells in the central nervous system that secrete oligoclonal immunoglobulin G preferentially synthesize G1m(1) IgG1 molecules. PMID:6973823

  6. Pulsed electron beam precharger

    SciTech Connect

    Finney, W.C.; Shelton, W.N.

    1991-01-01

    Electron beam precharging of a high resistivity aerosol was successfully performed under a range of experimental conditions during Quarter Six of the contract. The initial E-beam particle precharging experiments completed this term were designed to extend the efficiency of particle charging and collection using a fine, monodisperse aerosol at relatively large loadings in the FSU Electron Beam Precipitator wind tunnel. There are several reasons for doing this: (1) to re-establish a baseline performance criterion for comparison to other runs, (2) to test several recently upgraded or repaired subsystems, and (3) to improve upon the collection efficiency of the electron beam precipitator when testing precharging effectiveness with a very high resistivity, moderate-to-high dust concentration. In addition, these shakedown runs were used to determine a set of suitable operational parameters for the wind tunnel, the electrostatic collecting sections, and the MINACC E-beam accelerator. These parameters will normally be held constant while the precharging parameters are varied to produce an optimum particle charge. The electron beam precharging investigation performed during the period covered by Quarter Six used virtually the same experimental apparatus and procedures as in previous contract work, and these are described for review in this report. This investigation was part of an experimental effort which ran nearly continuously for nine months, encompassing work on the electrostatic collecting section, electron beam precharger, and particle charge-to-radius measuring apparatus. A summary of the work on dc electron beam precipitation is presented here.

  7. Beam Injection into RHIC

    NASA Astrophysics Data System (ADS)

    Fischer, W.; Hahn, H.; Mackay, W. W.; Tsoupas, N.

    1997-05-01

    During the RHIC sextant test in January 1997 beam was injected into a sixth of one of the rings for the first time. We describe the injection zone and its bottlenecks, the application program to steer the beam and the injection kickers. We report on the commissioning of the injection systems and on measurements of the kickers.

  8. Picosecond beam monitor

    DOEpatents

    Schutt, D.W.; Beck, G.O.

    1974-01-01

    The current in the beam of a particle accelerator is monitored with picosecond resolution by causing the beam to impinge upon the center conductor of a coaxial line, generating a pulse of electromagnetic energy in response thereto. This pulse is detected by means such as a sampling oscilloscope. (Official Gazette)

  9. Switchable circular beam deflectors

    NASA Astrophysics Data System (ADS)

    Shang, Xiaobing; Joshi, Pankaj; Tan, Jin-Yi; De Smet, Jelle; Cuypers, Dieter; Baghdasaryan, Tigran; Vervaeke, Michael; Thienpont, Hugo; De Smet, Herbert

    2016-04-01

    In this work, we report two types of electrically tunable photonic devices with circularly symmetric polarization independent beam steering performance (beam condensing resp. beam broadening). The devices consist of circular micro grating structures combined with nematic liquid crystal (LC) layers with anti-parallel alignment. A single beam deflector converts a polarized and monochromatic green laser beam (λ =543.5 nm) into a diffraction pattern, with the peak intensity appearing at the third order when 0~{{V}\\text{pp}} is applied and at the zeroth order (no deflection) for voltages above 30~{{V}\\text{pp}} . Depending on the shape of the grating structure (non-inverted or inverted), the deflection is inwards or outwards. Both grating types can be made starting from the same diamond-tooled master mold. A polarized white light beam is symmetrically condensed resp. broadened over 2° in the off state and is passed through unchanged in the on state. By stacking two such devices with mutually orthogonal LC alignment layers, polarization independent switchable circular beam deflectors are realized with a high transmittance (>80%), and with the same beam steering performance as the polarization dependent single devices.

  10. Beam Diagnostics for FACET

    SciTech Connect

    Li, S.Z.; Hogan, M.J.; /SLAC

    2011-08-19

    FACET, the Facility for Advanced Accelerator and Experimental Tests, is a new facility being constructed in sector 20 of the SLAC linac primarily to study beam driven plasma wakefield acceleration beginning in summer 2011. The nominal FACET parameters are 23GeV, 3nC electron bunches compressed to about 20 {micro}m long and focussed to about 10 {micro}m wide. Characterization of the beam-plasma interaction requires complete knowledge of the incoming beam parameters on a pulse-to-pulse basis. FACET diagnostics include Beam Position Monitors, Toroidal current monitors, X-ray and Cerenkov based energy spectrometers, optical transition radiation (OTR) profile monitors and coherent transition radiation (CTR) bunch length measurement systems. The compliment of beam diagnostics and their expected performance are reviewed. Beam diagnostic measurements not only provide valuable insights to the running and tuning of the accelerator but also are crucial for the PWFA experiments in particular. Beam diagnostic devices are being set up at FACET and will be ready for beam commissioning in summer 2011.

  11. The Norwegian Earth System Model, NorESM1-M - Part 2: Climate response and scenario projections

    NASA Astrophysics Data System (ADS)

    Iversen, T.; Bentsen, M.; Bethke, I.; Debernard, J. B.; Kirkevåg, A.; Seland, Ø.; Drange, H.; Kristjánsson, J. E.; Medhaug, I.; Sand, M.; Seierstad, I. A.

    2012-09-01

    The NorESM1-M simulation results for CMIP5 (http://cmip-pcmdi.llnl.gov/cmip5/index.html) are described and discussed. Together with the accompanying paper by Bentsen et al. (2012), this paper documents that NorESM1-M is a valuable global climate model for research and for providing complementary results to the evaluation of possible man made climate change. NorESM is based on the model CCSM4 operated at NCAR on behalf of many contributors in USA. The ocean model is replaced by a developed version of MICOM and the atmospheric model is extended with on-line calculations of aerosols, their direct effect, and their indirect effect on warm clouds. Model validation is presented in a companion paper (Bentsen et al., 2012). NorESM1-M is estimated to have equilibrium climate sensitivity slightly smaller than 2.9 K, a transient climate response just below 1.4 K, and is less sensitive than most other models. Cloud feedbacks damp the response, and a strong AMOC reduces the heat fraction available for increasing near surface temperatures, for evaporation, and for melting ice. The future projections based on RCP scenarios yield global surface air temperature increase almost one standard deviation lower than a 15-model average. Summer sea-ice is projected to decrease considerably by 2100, and completely for RCP8.5. The AMOC is projected to reduce by 12%, 15-17%, and 32% for the RCP2.6, 4.5, 6.0 and 8.5 respectively. Precipitation is projected to increase in the tropics, decrease in the subtropics and in southern parts of the northern extra-tropics during summer, and otherwise increase in most of the extra-tropics. Changes in the atmospheric water cycle indicate that precipitation events over continents will become more intense and dry spells more frequent. Extra-tropical storminess in the Northern Hemisphere is projected to shift northwards. There are indications of more frequent spring and summer blocking in

  12. Tectonic and Volcanic Character of the Endeavour Ridge Axis From 1-m Resolution AUV Multibeam Mapping Surveys

    NASA Astrophysics Data System (ADS)

    Caress, D. W.; Clague, D. A.; Thomas, H.; Thompson, D.; Calarco, M.; Holden, J. F.; Butterfield, D. A.

    2008-12-01

    High-resolution seafloor mapping surveys were conducted on the Endeavour Ridge using the MBARI AUV D. Allan. B. during R/V Atlantis cruise AT15-36. The four surveys had a combined bottom time of about 46 hours, collected data along 238 km of trackline, and mapped roughly 35 km2 with 200 kHz multibeam bathymetry and 100 kHz chirp sidescan. The bathymetry data have a 1-m lateral resolution and 0.1-m vertical precision. The surveys focused on the axial valley from 48°0.0' to 47°53.1'N or from 4.3 km south of the Mothra vent field to 0.5 km north of the Sasquatch vent field. We also mapped the western flank of the ridge between the Mothra and High Rise vent fields. The AUV is navigated using an inertial navigation system (INS) aided by Doppler Velocity Log (DVL) estimates of velocity over bottom. For these deep-water surveys, the initial AUV location derives from USBL fixes communicated to the vehicle by acoustic modem. Cross- correlation of bathymetric features in overlapping or crossing swaths allowed solution for an optimal navigation model that is internally self-consistent and accurate to the bathymetric resolution of 1 m. The Endeavour segment of the Juan de Fuca Ridge is characterized by a 300 m to 1500 m wide and 70 m to 140 m deep axial valley. This segment has long been interpreted as a currently tectonically dominated end member of intermediate rate spreading centers, which are thought to undergo cycles of tectonically and volcanically dominated spreading. The new surveys provide high-resolution bathymetry of the axial valley along a 13.5 km long section of the spreading center, and of the axis flanks along a 4.5 km section. The axial valley is highly dissected by fissures and normal faults throughout the survey length. There is no evidence for recent constructional volcanism south of the Mothra vent field. From Mothra northward to the Sasquatch vent field, six recognizable lava flows and drained lava lakes are found along the axis, most partly fissured

  13. Beam director design report

    SciTech Connect

    Younger, F.C.

    1986-08-01

    A design and fabrication effort for a beam director is documented. The conceptual design provides for the beam to pass first through a bending and focusing system (or ''achromat''), through a second achromat, through an air-to-vacuum interface (the ''beam window''), and finally through the vernier steering system. Following an initial concept study for a beam director, a prototype permanent magnet 30/sup 0/ beam-bending achromat and prototype vernier steering magnet were designed and built. In volume II, copies are included of the funding instruments, requests for quotations, purchase orders, a complete set of as-built drawings, magnetic measurement reports, the concept design report, and the final report on the design and fabrication project. (LEW)

  14. First Beam to FACET

    SciTech Connect

    Erickson, R.; Clarke, C.; Colocho, W.; Decker, F.-J.; Hogan, M.; Kalsi, S.; Lipkowitz, N.; Nelson, J.; Phinney, N.; Schuh, P.; Sheppard, J.; Smith, H.; Smith, T.; Stanek, M.; Turner, J.; Warren, J.; Weathersby, S.; Wienands, U.; Wittmer, W.; Woodley, M.; Yocky, G.; /SLAC

    2011-12-13

    The SLAC 3km linear electron accelerator has been reconfigured to provide a beam of electrons to the new Facility for Advanced Accelerator Experimental Tests (FACET) while simultaneously providing an electron beam to the Linac Coherent Light Source (LCLS). On June 23, 2011, the first electron beam was transported through this new facility. Commissioning of FACET is in progress. On June 23, 2011, an electron beam was successfully transported through the new FACET system to a dump in Sector 20 in the linac tunnel. This was achieved while the last third of the linac, operating from the same control room, but with a separate injector system, was providing an electron beam to the Linac Coherent Light Source (LCLS), demonstrating that concurrent operation of the two facilities is practical. With the initial checkout of the new transport line essentially complete, attention is now turning toward compressing the electron bunches longitudinally and focusing them transversely to support a variety of accelerator science experiments.

  15. Laser beam alignment system

    DOEpatents

    Kasner, William H.; Racki, Daniel J.; Swenson, Clark E.

    1984-01-01

    A plurality of pivotal reflectors direct a high-power laser beam onto a workpiece, and a rotatable reflector is movable to a position wherein it intercepts the beam and deflects a major portion thereof away from its normal path, the remainder of the beam passing to the pivotal reflectors through an aperture in the rotating reflector. A plurality of targets are movable to positions intercepting the path of light traveling to the pivotal reflectors, and a preliminary adjustment of the latter is made by use of a low-power laser beam reflected from the rotating reflector, after which the same targets are used to make a final adjustment of the pivotal reflectors with the portion of the high-power laser beam passed through the rotating reflector.

  16. BEAMS3D Neutral Beam Injection Model

    NASA Astrophysics Data System (ADS)

    McMillan, Matthew; Lazerson, Samuel A.

    2014-09-01

    With the advent of applied 3D fields in Tokamaks and modern high performance stellarators, a need has arisen to address non-axisymmetric effects on neutral beam heating and fueling. We report on the development of a fully 3D neutral beam injection (NBI) model, BEAMS3D, which addresses this need by coupling 3D equilibria to a guiding center code capable of modeling neutral and charged particle trajectories across the separatrix and into the plasma core. Ionization, neutralization, charge-exchange, viscous slowing down, and pitch angle scattering are modeled with the ADAS atomic physics database. Elementary benchmark calculations are presented to verify the collisionless particle orbits, NBI model, frictional drag, and pitch angle scattering effects. A calculation of neutral beam heating in the NCSX device is performed, highlighting the capability of the code to handle 3D magnetic fields. Notice: this manuscript has been authored by Princeton University under Contract Number DE-AC02-09CH11466 with the US Department of Energy. The United States Government retains and the publisher, by accepting the article for publication, acknowledges that the United States Government retains a non-exclusive, paid-up, irrevocable, world-wide license to publish or reproduce the published form of this manuscript, or allow others to do so, for United States Government purposes.

  17. In situ expression of intercellular adhesion molecule-1 (ICAM-1) mRNA in calves with acute Pasteurella haemolytica pneumonia.

    PubMed

    Radi, Z A; Register, K B; Lee, E K; Kehrli, M E; Brogden, K A; Gallup, J M; Ackermann, M R

    1999-09-01

    The in situ expression of intercellular adhesion molecule-1 (ICAM-1) mRNA in normal and pneumonic lung tissues of Holstein calves with bovine leukocyte adhesion deficiency (BLAD) was compared with that of age-matched non-BLAD Holstein calves by in situ hybridization. Twenty-four Holstein calves (both BLAD and non-BLAD) were randomly assigned to one of two experimental groups and inoculated intrabronchially with Pasteurella haemolytica or pyrogen-free saline. Lung tissues were collected and fixed in 10% neutral formalin at 2 or 4 hours postinoculation (PI). The expression and distribution of ICAM-1 mRNA in the different cell types of the lung tissue was detected by in situ hybridization with a 307-base-pair bovine ICAM-1 riboprobe. In lungs of both non-BLAD and BLAD saline-inoculated calves, ICAM-1 expression was present in epithelial cells but occurred in <30% of cells in bronchi, bronchioles, and alveoli. ICAM-1 expression in vascular endothelial cells was present in <30% of cells in pulmonary arteries and veins. The expression of ICAM-1 was significantly greater (>60% of cells) in bronchiolar and alveolar epithelial cells and pulmonary endothelial cells of arteries and veins in both BLAD and non-BLAD calves inoculated with P. haemolytica. Bronchiolar epithelium had the highest intensity of mRNA expression and highest percentage of cells that were stained, whereas bronchial epithelium had the lowest intensity and percentage of cells stained. Most alveolar macrophages and neutrophils in infected lungs also expressed ICAM-1. ICAM-1 expression was generally increased in infected BLAD calves at 2 hours PI as compared with non-BLAD calves but not at 4 hours PI. The increased expression of ICAM-1 during acute P. haemolytica pneumonia in calves suggests that ICAM-1 is upregulated and may play a role in leukocyte infiltration. The extent of ICAM-1 expression in P. haemolytica-inoculated calves with BLAD was initially enhanced but otherwise similar to that in non

  18. Acute alcohol intoxication increases atrogin-1 and MuRF1 mRNA without increasing proteolysis in skeletal muscle

    PubMed Central

    Vary, Thomas C.; Frost, Robert A.; Lang, Charles H.

    2008-01-01

    Acute alcohol intoxication decreases muscle protein synthesis, but there is a paucity of data on the ability of alcohol to regulate muscle protein degradation. Furthermore, various types of atrophic stimuli appear to regulate ubiquitin-proteasome-dependent proteolysis by increasing the muscle-specific E3 ligases atrogin-1 and MuRF1 (i.e., “atrogenes”). Therefore, the present study was designed to test the hypothesis that acute alcohol intoxication increases atrogene expression leading to an elevated rate of muscle protein breakdown. In male rats, the intraperitoneal injection of alcohol dose- and time-dependently increased atrogin-1 and MuRF1 mRNA in gastrocnemius, the latter of which was most pronounced. A comparable change was absent in the soleus and heart. The ability of in vivo-administered ethanol to increase atrogene expression was independent of the route of alcohol administration (intraperitoneal vs. oral), as well as of nutritional status (fed vs. fasted) and gender (male vs. female). The increase in atrogin-1 and MuRF1 was independent of alcohol metabolism, and the overproduction of endogenous glucocorticoids and could not be prevented by maintaining the circulating concentration of insulin-like growth factor-I. Despite marked changes in atrogene expression, acute alcohol in vivo did not alter the release of either 3-methylhistidine (MH) or tyrosine from the isolated perfused hindlimb, suggesting that the rate of muscle proteolysis remains unchanged. Moreover, alcohol did not increase the directly determined rate of protein degradation in isolated epitrochlearis muscles or cultured myocytes. Finally, no increase in atrogene expression or 3-MH release was detected in muscle from rats fed an alcohol-containing diet. Our results indicate that although acute alcohol intoxication increases atrogin-1 and MuRF1 mRNA preferentially in fast-twitch skeletal muscle, this change was not associated with increased rates of muscle proteolysis. Therefore, the loss

  19. Diffraction of a Laser Beam.

    ERIC Educational Resources Information Center

    Jodoin, Ronald E.

    1979-01-01

    Investigates the effect of the nonuniform irradiance across a laser beam on diffraction of the beam, specifically the Fraunhofer diffraction of a laser beam with a Gaussian irradiance profile as it passes through a circular aperture. (GA)

  20. Synthesis and characterization of a novel eco-friendly corrosion inhibition for mild steel in 1 M hydrochloric acid.

    PubMed

    Al-Amiery, Ahmed A; Binti Kassim, Fatin A; Kadhum, Abdul Amir H; Mohamad, Abu Bakar

    2016-01-01

    The acid corrosion inhibition process of mild steel in 1 M HCl by azelaic acid dihydrazide has been investigated using electrochemical impedance spectroscopy (EIS), potentiodynamic polarization, open circuit potential (OCP) and electrochemical frequency modulation (EFM). Azelaic acid dihydrazide was synthesized, and its chemical structure was elucidated and confirmed using spectroscopic techniques (infrared, nuclear magnetic resonance and mass spectroscopy). Potentiodynamic polarization studies indicate that azelaic acid dihydrazide is a mixed-type inhibitor. The inhibition efficiency increases with increased inhibitor concentration and reaches its maximum of 93% at 5 × 10(-3) M. The adsorption of the inhibitor on a mild steel surface obeys Langmuir's adsorption isotherm. The effect of te perature on corrosion behavior in the presence of 5 × 10(-3) M inhibitor was studied in the temperature range of 30-60 °C. The results indicated that inhibition efficiencies were enhanced with an increase in concentration of inhibitor and decreased with a rise in temperature. To inspect the surface morphology of inhibitor film on the mild steel surface, scanning electron microscopy (SEM) was used before and after immersion in 1.0 M HCl. PMID:26795066

  1. Electrochemical Evaluation of Corrosion on Borided and Non-borided Steels Immersed in 1 M HCl Solution

    NASA Astrophysics Data System (ADS)

    Mejía-Caballero, I.; Martínez-Trinidad, J.; Palomar-Pardavé, M.; Romero-Romo, M.; Herrera-Hernández, H.; Herrera-Soria, O.; Campos Silva, I.

    2014-08-01

    In this study the corrosion resistances of AISI 1018 and AISI 304 borided and non-borided steels were estimated using polarization resistance and electrochemical impedance spectroscopy (EIS) techniques. Boriding of the steel samples was conducted using the powder-pack method at 1223 K with 6 h of exposure. Structural examinations of the surfaces of the borided steels showed the presence of a Fe2B layer with isolated FeB teeth on the AISI 1018 steel, whereas a compact layer of FeB/Fe2B was formed on the AISI 304 steel. Polarization resistance and EIS of the borided and non-borided steels surfaces were performed in a corrosive solution of 1 M HCl. The EIS data were analyzed during 43 days of exposure to the acid solution. Impedance curves obtained during this period for the borided and non-borided steels were modeled using equivalent electrical circuits. The results of both electrochemical techniques indicated that boride layers formed at the steel surfaces effectively protect the samples from the corrosive effects of HCl. The main corrosion processes observed on the boride layers were pitting and crevice corrosion.

  2. Increased production of cellulases and xylanases by Penicillium echinulatum S1M29 in batch and fed-batch culture.

    PubMed

    dos Reis, Laísa; Fontana, Roselei Claudete; Delabona, Priscila da Silva; da Silva Lima, Deise Juliana; Camassola, Marli; Pradella, José Geraldo da Cruz; Dillon, Aldo José Pinheiro

    2013-10-01

    The development of more productive strains of microorganisms and processes that increase enzyme levels can contribute to the economically efficient production of second generation ethanol. To this end, cellulases and xylanases were produced with the S1M29 mutant strain of Penicillium echinulatum, using different concentrations of cellulose (20, 40, and 60 g L(-1)) in batch and fed-batch processes. The highest activities of FPase (8.3 U mL(-1)), endoglucanases (37.3 U mL(-1)), and xylanases (177 U mL(-1)) were obtained in fed-batch cultivation with 40 g L(-1) of cellulose. The P. echinulatum enzymatic broth and the commercial enzyme Cellic CTec2 were tested for hydrolysis of pretreated sugar cane bagasse. Maximum concentrations of glucose and xylose were achieved after 72 h of hydrolysis. Glucose yields of 28.0% and 27.0% were obtained using the P. echinulatum enzymatic extract and Cellic CTec2, respectively.

  3. CPEB1 restrains proliferation of Glioblastoma cells through the regulation of p27Kip1 mRNA translation

    PubMed Central

    Galardi, Silvia; Petretich, Massimo; Pinna, Guillaume; D’Amico, Silvia; Loreni, Fabrizio; Michienzi, Alessandro; Groisman, Irina; Ciafrè, Silvia Anna

    2016-01-01

    The cytoplasmic element binding protein 1 (CPEB1) regulates many important biological processes ranging from cell cycle control to learning and memory formation, by controlling mRNA translation efficiency via 3′ untranslated regions (3′UTR). In the present study, we show that CPEB1 is significantly downregulated in human Glioblastoma Multiforme (GBM) tissues and that the restoration of its expression impairs glioma cell lines growth. We demonstrate that CPEB1 promotes the expression of the cell cycle inhibitor p27Kip1 by specifically targeting its 3′UTR, and competes with miR-221/222 binding at an overlapping site in the 3′UTR, thus impairing miR-221/222 inhibitory activity. Upon binding to p27Kip1 3′UTR, CPEB1 promotes elongation of poly-A tail and the subsequent translation of p27Kip1 mRNA. This leads to higher levels of p27Kip1 in the cell, in turn significantly inhibiting cell proliferation, and confers to CPEB1 a potential value as a tumor suppressor in Glioblastoma. PMID:27142352

  4. SR proteins SRp20 and 9G8 contribute to efficient export of herpes simplex virus 1 mRNAs.

    PubMed

    Escudero-Paunetto, Laurimar; Li, Ling; Hernandez, Felicia P; Sandri-Goldin, Rozanne M

    2010-06-01

    Herpes simplex virus 1 (HSV-1) mRNAs are exported to the cytoplasm through the export receptor TAP/NFX1. HSV-1 multifunctional protein ICP27 interacts with TAP/NXF1, binds viral RNAs, and is required for efficient viral RNA export. In ICP27 mutant infections, viral RNA export is reduced but not ablated, indicating that other export adaptors can aid in viral RNA export. Export adaptor protein Aly/REF is recruited to viral replication compartments, however, Aly/REF knockdown has little effect on viral RNA export. SR proteins SRp20 and 9G8 interact with TAP/NXF1 and mediate export of some cellular RNAs. We report that siRNA knockdown of SRp20 or 9G8 resulted in about a 10 fold decrease in virus yields and in nuclear accumulation of polyA+ RNA. In infected cells depleted of SRp20, newly transcribed Bromouridine-labeled RNA also accumulated in the nucleus. We conclude that SRp20 and 9G8 contribute to HSV-1 RNA export. PMID:20227104

  5. Identification of the 11 beta-hydroxysteroid dehydrogenase type 1 mRNA and protein in human mononuclear leukocytes.

    PubMed

    Fiore, C; Nardi, A; Dalla Valle, L; Pellati, D; Krozowski, Z; Colombo, L; Armanini, D

    2009-10-01

    The enzyme 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1) catalyzes the interconversion between inactive 11-ketoglucocorticoids and their active 11beta-hydroxy derivatives, such as cortisol and corticosterone. We have investigated the expression of 11beta-HSD1 in freshly isolated human peripheral mononuclear leukocytes (MNL). The presence of 11beta-HSD1 mRNA was demonstrated in total RNA by RT-PCR using specific primers designed on the 4th and 5th exons of the human 11beta-HSD1 gene. Fragments of the expected size were consistently detected on agarose gels, and sequencing showed complete identity with the corresponding sequence deposited in GenBank. The occurrence of 11beta-HSD1 protein was established by Western immunoblot analysis with a specific polyclonal antibody. Enzyme oxo-reductase activity was investigated by incubating 12 samples of MNL isolated from from 8 subjects with [3H]cortisone and formation of cortisol was established only in 4 subjects (yield range: 0.15-1.3%) after acetylation and TLC, blank subtraction and correction for losses. 18beta-Glycyrrhetinic acid, an inhibitor of 11 beta-HSD1, reduced cortisol production below detection limit. Dehydrogenase activity could not be demonstrated. It is suggested that, although enzyme activity of 11beta-HSD1 in circulating MNL is low, it is apparently ready for enhancement after MNL migration to sites of inflammation. PMID:19235128

  6. First generation solar adaptive optics system for 1-m New Vacuum Solar Telescope at Fuxian Solar Observatory

    NASA Astrophysics Data System (ADS)

    Rao, Chang-Hui; Zhu, Lei; Rao, Xue-Jun; Zhang, Lan-Qiang; Bao, Hua; Ma, Xue-An; Gu, Nai-Ting; Guan, Chun-Lin; Chen, Dong-Hong; Wang, Cheng; Lin, Jun; Jin, Zen-Yu; Liu, Zhong

    2016-02-01

    The first generation solar adaptive optics (AO) system, which consists of a fine tracking loop with a tip-tilt mirror (TTM) and a correlation tracker, and a high-order correction loop with a 37-element deformable mirror (DM), a correlating Shack-Hartmann (SH) wavefront sensor (WFS) based on the absolute difference algorithm and a real time controller (RTC), has been developed and installed at the 1-m New Vacuum Solar Telescope (NVST) that is part of Fuxian Solar Observatory (FSO). Compared with the 37-element solar AO system developed for the 26-cm Solar Fine Structure Telescope, administered by Yunnan Astronomical Observatories, this AO system has two updates: one is the subaperture arrangement of the WFS changed from square to hexagon; the other is the high speed camera of the WFS and the corresponding real time controller. The WFS can be operated at a frame rate of 2100 Hz and the error correction bandwidth can exceed 100 Hz. After AO correction, the averaged residual image motion and the averaged RMS wavefront error are reduced to 0.06″ and 45 nm, respectively. The results of on-sky testing observations demonstrate better contrast and finer structures of the images taken with AO than those without AO.

  7. Cardiosphere-Derived Cells Facilitate Heart Repair by Modulating M1/M2 Macrophage Polarization and Neutrophil Recruitment

    PubMed Central

    Hasan, Al Shaimaa; Luo, Lan; Yan, Chen; Zhang, Tian-Xia; Urata, Yoshishige; Goto, Shinji; Mangoura, Safwat A.; Abdel-Raheem, Mahmoud H.; Zhang, Shouhua; Li, Tao-Sheng

    2016-01-01

    Cardiosphere-derived cells (CDCs), one of the promising stem cell sources for myocardial repair, have been tested in clinical trials and resulted in beneficial effects; however, the relevant mechanisms are not fully understood. In this study, we examined the hypothesis that CDCs favor heart repair by switching the macrophages from a pro-inflammatory phenotype (M1) into a regulatory anti-inflammatory phenotype (M2). Macrophages from mice were cultured with CDCs-conditioned medium or with fibroblasts-conditioned medium as a control. Immunostaining showed that CDCs-conditioned medium significantly enhanced the expression of CD206 (a marker for M2 macrophages), but decreased the expression of CD86 (a marker for M1 macrophages) 3 days after culture. For animal studies, we used an acute myocardial infarction model of mice. We injected CDCs, fibroblasts, or saline only into the border zone of infarction. Then we collected the heart tissues for histological analysis 5 and 14 days after treatment. Compared with control animals, CDCs treatment significantly decreased M1 macrophages and neutrophils but increased M2 macrophages in the infarcted heart. Furthermore, CDCs-treated mice had reduced infarct size and fewer apoptotic cells compared to the controls. Our data suggest that CDCs facilitate heart repair by modulating M1/M2 macrophage polarization and neutrophil recruitment, which may provide a new insight into the mechanisms of stem cell-based myocardial repair. PMID:27764217

  8. Structural Characterization of IgG1 mAb Aggregates and Particles Generated under Various Stress Conditions

    PubMed Central

    Telikepalli, Srivalli N.; Kumru, Ozan S.; Kalonia, Cavan; Esfandiary, Reza; Joshi, Sangeeta B.; Middaugh, C. Russell; Volkin, David B.

    2014-01-01

    IgG1 mAb solutions were prepared with and without sodium chloride and subjected to different environmental stresses. Formation of aggregates and particles of varying size was monitored by a combination of size exclusion chromatography (SEC), Nanosight Tracking Analysis (NTA), Micro-flow Imaging (MFI), turbidity, and visual assessments. Stirring and heating induced the highest concentration of particles. In general, the presence of NaCl enhanced this effect. The morphology of the particles formed from mAb samples exposed to different stresses was analyzed from TEM and MFI images. Shaking samples without NaCl generated the most fibrillar particles, while stirring created largely spherical particles. The composition of the particles was evaluated for covalent cross-linking by SDS-PAGE, overall secondary structure by FTIR microscopy, and surface apolarity by extrinsic fluorescence spectroscopy. Freeze-thaw and shaking led to particles containing protein with native-like secondary structure. Heating and stirring produced IgG1 containing aggregates and particles with some non-native disulfide crosslinks, varying levels of intermolecular beta sheet content, and increased surface hydrophobicity. These results highlight the importance of evaluating protein particle morphology and composition, in addition to particle number and size distributions, to better understand the effect of solution conditions and environmental stresses on the formation of protein particles in mAb solutions. PMID:24452866

  9. Final Report for the Study on S-Implanted Alloy 22 in 1 M NaCl Solutions

    SciTech Connect

    Windisch, Charles F.; Baer, Donald R.; Jones, R. H.; Engelhard, Mark H.

    2005-11-01

    The objective of this study was to examine the effects of high levels of S in the near-surface region on the passivity of Alloy 22, a corrosion resistant Ni-Cr-Mo alloy, in deaerated 1 M NaCl solution. Near-surface concentrations of S up to 2 at.% were achieved in Alloy 22 test specimens by implanting them with S. The S-implanted samples were then evaluated in short-term electrochemical tests in the salt solution and subsequently analyzed with X-ray Photoelectron Spectroscopy (XPS) for film thickness and composition. Specimens tested included non-implanted and annealed Alloy 22 samples, samples implanted with S, and “blanks” implanted with Ar as an ion that would simulate the “damage” of S implantation without the chemical effect. A sample of S-implanted Alloy 22 was also exposed to solution for 29 days and analyzed for evidence of S accumulation at the surface over longer times.

  10. Trehalose accumulation induced during the oxidative stress response is independent of TPS1 mRNA levels in Candida albicans.

    PubMed

    Zaragoza, Oscar; González-Párraga, Pilar; Pedreño, Yolanda; Alvarez-Peral, Francisco J; Argüelles, Juan-Carlos

    2003-06-01

    Growing cells of the Candida albicans trehalose-deficient mutant tps1/tps1 were extremely sensitive to severe oxidative stress exposure (H2O2). However, their viability was not affected after saline stress or heat-shock treatments, being roughly equivalent to that of the parental strain. In wild-type cells, these adverse conditions induced the intracellular accumulation of trehalose together with activation of trehalose-6P synthase, whereas the endogenous trehalose content and the corresponding biosynthetic activity were barely detectable in the tps1/tps1 mutant. The addition of cycloheximide did not prevent the marked induction of trehalose-6P synthase activity. Furthermore, the presence of H2O2 decreased the level of TPS1 mRNA expression. Hence, the conspicuous trehalose accumulation in response to oxidative stress is not induced by increased transcription of TPS1. Our results are consistent with a specific requirement of trehalose in order to withstand a severe oxidative stress in C. albicans, and suggest that trehalose accumulation observed under these conditions is a complex process that most probably involves post-translational modifications of the trehalose synthase complex.

  11. SR proteins SRp20 and 9G8 contribute to efficient export of herpes simplex virus 1 mRNAs

    SciTech Connect

    Escudero-Paunetto, Laurimar; Li Ling; Hernandez, Felicia P.; Sandri-Goldin, Rozanne M.

    2010-06-05

    Herpes simplex virus 1 (HSV-1) mRNAs are exported to the cytoplasm through the export receptor TAP/NFX1. HSV-1 multifunctional protein ICP27 interacts with TAP/NXF1, binds viral RNAs, and is required for efficient viral RNA export. In ICP27 mutant infections, viral RNA export is reduced but not ablated, indicating that other export adaptors can aid in viral RNA export. Export adaptor protein Aly/REF is recruited to viral replication compartments, however, Aly/REF knockdown has little effect on viral RNA export. SR proteins SRp20 and 9G8 interact with TAP/NXF1 and mediate export of some cellular RNAs. We report that siRNA knockdown of SRp20 or 9G8 resulted in about a 10 fold decrease in virus yields and in nuclear accumulation of poly(A+) RNA. In infected cells depleted of SRp20, newly transcribed Bromouridine-labeled RNA also accumulated in the nucleus. We conclude that SRp20 and 9G8 contribute to HSV-1 RNA export.

  12. Critical Role of Regulator G-Protein Signaling 10 (RGS10) in Modulating Macrophage M1/M2 Activation

    PubMed Central

    Lee, Jae-Kyung; Chung, Jaegwon; Kannarkat, George T.; Tansey, Malú G.

    2013-01-01

    Regulator of G protein signaling 10 (RGS10), a GTPase accelerating protein (GAP) for G alpha subunits, is a negative regulator of NF-κB in microglia. Here, we investigated the role of RGS10 in macrophages, a closely related myeloid-derived cell type. Features of classical versus alternative activation were assessed in Rgs10-/- peritoneal and bone marrow-derived macrophages upon LPS or IL-4 treatments, respectively. Our results showed that Rgs10-/- macrophages produced higher levels of pro-inflammatory cytokines including TNF, IL-1β and IL-12p70 in response to LPS treatment and exerted higher cytotoxicity on dopaminergic MN9D neuroblastoma cells. We also found that Rgs10-/- macrophages displayed a blunted M2 phenotype upon IL-4 priming. Specifically, Rgs10-/- macrophages displayed lower YM1 and Fizz1 mRNA levels as measured by QPCR compared to wild type macrophages upon IL-4 treatment and this response was not attributable to differences in IL-4 receptor expression. Importantly, phagocytic activities of Rgs10-/- macrophages were blunted in response to IL-4 priming and/or LPS treatments. However, there was no difference in chemotaxis between Rgs10-/- and WT macrophages. Our data indicate that Rgs10-/- macrophages displayed dysregulated M1 responses along with blunted M2 alternative activation responses, suggesting that RGS10 plays an important role in determining macrophage activation responses. PMID:24278459

  13. Sphingosylphosphorylcholine protects cardiomyocytes against ischemic apoptosis via lipid raft/PTEN/Akt1/mTOR mediated autophagy.

    PubMed

    Yue, Hong-Wei; Liu, Jing; Liu, Ping-Ping; Li, Wen-Jing; Chang, Fen; Miao, Jun-Ying; Zhao, Jing

    2015-09-01

    Autophagy, evoked by diverse stresses including myocardial ischemia/reperfusion (I/R), profoundly affects the development of heart failure. However, the specific molecular basis of autophagy remains to be elucidated. Here we report that sphingosylphosphorylcholine (SPC), a bioactive sphingolipid, significantly suppressed apoptosis and induced autophagy in cardiomyocytes. Blocking this SPC evoked autophagy by 3-methyladenine (3MA)-sensitized cardiomyocytes to serum deprivation-induced apoptosis. Subsequent studies revealed that SPC downregulated the phosphorylation of p70S6K and 4EBP1 (two substrates of mTOR) but enhanced that of JNK when inducing autophagy. We identified SPC as a switch for the activity of Akt1, a supposed upstream modulator of both mTOR and JNK. Furthermore, β-cyclodextrin, which destroys membrane cholesterol, abolished the SPC-reduced phosphorylation of both Akt and PTEN, thus inhibiting SPC-induced autophagy. In conclusion, SPC is a novel molecule protecting cardiomyocytes against apoptosis by promoting autophagy. The lipid raft/PTEN/Akt1/mTOR signal pathway is the underlying mechanism and might provide novel targets for cardiac failure therapy.

  14. Pharmacophore Modeling and Virtual Screening for Novel Acidic Inhibitors of Microsomal Prostaglandin E2 Synthase-1 (mPGES-1)

    PubMed Central

    2011-01-01

    Microsomal prostaglandin E2 synthase-1 (mPGES-1) catalyzes prostaglandin E2 formation and is considered as a potential anti-inflammatory pharmacological target. To identify novel chemical scaffolds active on this enzyme, two pharmacophore models for acidic mPGES-1 inhibitors were developed and theoretically validated using information on mPGES-1 inhibitors from literature. The models were used to screen chemical databases supplied from the National Cancer Institute (NCI) and the Specs. Out of 29 compounds selected for biological evaluation, nine chemically diverse compounds caused concentration-dependent inhibition of mPGES-1 activity in a cell-free assay with IC50 values between 0.4 and 7.9 μM, respectively. Further pharmacological characterization revealed that also 5-lipoxygenase (5-LO) was inhibited by most of these active compounds in cell-free and cell-based assays with IC50 values in the low micromolar range. Together, nine novel chemical scaffolds inhibiting mPGES-1 are presented that may possess anti-inflammatory properties based on the interference with eicosanoid biosynthesis. PMID:21466167

  15. Secondary Structure of a Conserved Domain in an Intron of Influenza A M1 mRNA

    PubMed Central

    2014-01-01

    Influenza A virus utilizes RNA throughout infection. Little is known, however, about the roles of RNA structures. A previous bioinformatics survey predicted multiple regions of influenza A virus that are likely to generate evolutionarily conserved and stable RNA structures. One predicted conserved structure is in the pre-mRNA coding for essential proteins, M1 and M2. This structure starts 79 nucleotides downstream of the M2 mRNA 5′ splice site. Here, a combination of biochemical structural mapping, mutagenesis, and NMR confirms the predicted three-way multibranch structure of this RNA. Imino proton NMR spectra reveal no change in secondary structure when 80 mM KCl is supplemented with 4 mM MgCl2. Optical melting curves in 1 M NaCl and in 100 mM KCl with 10 mM MgCl2 are very similar, with melting temperatures ∼14 °C higher than that for 100 mM KCl alone. These results provide a firm basis for designing experiments and potential therapeutics to test for function in cell culture. PMID:25026548

  16. hNAG-1 increases lifespan by regulating energy metabolism and insulin/IGF-1/mTOR signaling.

    PubMed

    Wang, Xingya; Chrysovergis, Kali; Kosak, Justin; Kissling, Grace; Streicker, Mike; Moser, Glenda; Li, Ruifang; Eling, Thomas E

    2014-08-01

    Nonsteroidal anti-inflammatory drug-activated gene (NAG-1) or GDF15 is a divergent member of the transforming growth factor beta (TGF-β) superfamily and mice expressing hNAG-1/hGDF15 have been shown to be resistant to HFD-induced obesity and inflammation. This study investigated if hNAG-1 increases lifespan in mice and its potential mechanisms. Here we report that female hNAG-1 mice had significantly increased both mean and median life spans in two transgenic lines, with a larger difference in life spans in mice on a HFD than on low fat diet. hNAG-1 mice displayed significantly reduced body and adipose tissue weight, lowered serum IGF-1, insulin and glucose levels, improved insulin sensitivity, and increased oxygen utilization, oxidative metabolism and energy expenditure. Gene expression analysis revealed significant differences in conserved gene pathways that are important regulators of longevity, including IGF-1, p70S6K, and PI3K/Akt signaling cascades. Phosphorylation of major components of IGF-1/mTOR signaling pathway was significantly lower in hNAG-1mice. Collectively, hNAG-1 is an important regulator of mammalian longevity and may act as a survival factor. Our study suggests that hNAG-1 has potential therapeutic uses in obesity-related diseases where life span is frequently shorter. PMID:25239873

  17. Mammalian target of rapamycin complex 1 (mTORC1) Is required for mouse spermatogonial differentiation in vivo.

    PubMed

    Busada, Jonathan T; Niedenberger, Bryan A; Velte, Ellen K; Keiper, Brett D; Geyer, Christopher B

    2015-11-01

    Spermatogonial stem cells (SSCs) must balance self-renewal with production of transit-amplifying progenitors that differentiate in response to retinoic acid (RA) before entering meiosis. This self-renewal vs. differentiation spermatogonial fate decision is critical for maintaining tissue homeostasis, as imbalances cause spermatogenesis defects that can lead to human testicular cancer or infertility. A great deal of effort has been exerted to understand how the SSC population is maintained. In contrast, little is known about the essential program of differentiation initiated by retinoic acid (RA) that precedes meiosis, and the pathways and proteins involved are poorly defined. We recently reported a novel role for RA in stimulating the PI3/AKT/mTOR kinase signaling pathway to activate translation of repressed mRNAs such as Kit. Here, we examined the requirement for mTOR complex 1 (mTORC1) in mediating the RA signal to direct spermatogonial differentiation in the neonatal testis. We found that in vivo inhibition of mTORC1 by rapamycin blocked spermatogonial differentiation, which led to an accumulation of undifferentiated spermatogonia. In addition, rapamycin also blocked the RA-induced translational activation of mRNAs encoding KIT, SOHLH1, and SOHLH2 without affecting expression of STRA8. These findings highlight dual roles for RA in germ cell development - transcriptional activation of genes, and kinase signaling to stimulate translation of repressed messages required for spermatogonial differentiation.

  18. Electron Beam Lithography

    NASA Astrophysics Data System (ADS)

    Harriott, Lloyd R.

    1997-04-01

    Electron beams have played a significant role in semiconductor technology for more than twenty years. Early electron beam machines used a raster scanned beam spot to write patterns in electron-sensitive polymer resist materials. The main application of electron beam lithography has been in mask making. Despite the inherently high spatial resolution and wide process margins of electron beam lithography, the writing rate for semiconductor wafers has been too slow to be economically viable on a large scale. In the late 1970's, variable shape electron beam writing was developed, projecting a rectangular beam whose size can be varied for each "shot" exposure of a particular pattern, allowing some integrated circuits to be made economically where a variety of "customized" patterns are desired. In the cell or block projection electron beam exposure technique, a unit cell of a repetitive pattern is projected repeatedly to increase the level of parallelism. This can work well for highly repetitive patterns such as memory chips but is not well suited to complex varying patterns such as microprocessors. The rapid progress in the performance of integrated circuits has been largely driven by progress in optical lithography, through improvements in lens design and fabrication as well as the use of shorter wavelengths for the exposure radiation. Due to limitations from the opacity of lens and mask materials, it is unlikely that conventional optical printing methods can be used at wavelengths below 193 nm or feature sizes much below 180 nm. One candidate technology for a post-optical era is the Scattering with Angular Limitation Projection Electron-beam Lithography (SCALPEL) approach, which combines the high resolution and wide process latitude inherent in electron beam lithography with the throughput of a parallel projection system. A mask consisting of a low atomic number membrane and a high atomic number pattern layer is uniformly illuminated with high energy (100 ke

  19. Energy Production Demonstrator for Megawatt Proton Beams

    SciTech Connect

    Pronskikh, Vitaly S.; Mokhov, Nikolai V.; Novitski, Igor; Tyutyunnikov, Sergey I.

    2014-07-16

    A preliminary study of the Energy Production Demonstrator (EPD) concept - a solid heavy metal target irradiated by GeV-range intense proton beams and producing more energy than consuming - is carried out. Neutron production, fission, energy deposition, energy gain, testing volume and helium production are simulated with the MARS15 code for tungsten, thorium, and natural uranium targets in the proton energy range 0.5 to 120 GeV. This study shows that the proton energy range of 2 to 4 GeV is optimal for both a natU EPD and the tungsten-based testing station that would be the most suitable for proton accelerator facilities. Conservative estimates, not including breeding and fission of plutonium, based on the simulations suggest that the proton beam current of 1 mA will be sufficient to produce 1 GW of thermal output power with the natU EPD while supplying < 8% of that power to operate the accelerator. The thermal analysis shows that the concept considered has a problem due to a possible core meltdown; however, a number of approaches (a beam rastering, in first place) are suggested to mitigate the issue. The efficiency of the considered EPD as a Materials Test Station (MTS) is also evaluated in this study.

  20. Methodological demonstration of laser beam pointing control for space gravitational wave detection missions.

    PubMed

    Dong, Yu-Hui; Liu, He-Shan; Luo, Zi-Ren; Li, Yu-Qiong; Jin, Gang

    2014-07-01

    In space laser interferometer gravitational wave (G.W.) detection missions, the stability of the laser beam pointing direction has to be kept at 10 nrad/√Hz. Otherwise, the beam pointing jitter noise will dominate the noise budget and make the detection of G.W. impossible. Disturbed by the residue non-conservative forces, the fluctuation of the laser beam pointing direction could be a few μrad/√Hz at frequencies from 0.1 mHz to 10 Hz. Therefore, the laser beam pointing control system is an essential requirement for those space G.W. detection missions. An on-ground test of such beam pointing control system is performed, where the Differential Wave-front Sensing technique is used to sense the beams pointing jitter. An active controlled steering mirror is employed to adjust the beam pointing direction to compensate the jitter. The experimental result shows that the pointing control system can be used for very large dynamic range up to 5 μrad. At the interested frequencies of space G.W. detection missions, between 1 mHz and 1 Hz, beam pointing stability of 6 nrad/√Hz is achieved. PMID:25085155

  1. Methodological demonstration of laser beam pointing control for space gravitational wave detection missions

    SciTech Connect

    Dong, Yu-Hui; Liu, He-Shan; Luo, Zi-Ren; Li, Yu-Qiong; Jin, Gang

    2014-07-15

    In space laser interferometer gravitational wave (G.W.) detection missions, the stability of the laser beam pointing direction has to be kept at 10 nrad/√Hz. Otherwise, the beam pointing jitter noise will dominate the noise budget and make the detection of G.W. impossible. Disturbed by the residue non-conservative forces, the fluctuation of the laser beam pointing direction could be a few μrad/√Hz at frequencies from 0.1 mHz to 10 Hz. Therefore, the laser beam pointing control system is an essential requirement for those space G.W. detection missions. An on-ground test of such beam pointing control system is performed, where the Differential Wave-front Sensing technique is used to sense the beams pointing jitter. An active controlled steering mirror is employed to adjust the beam pointing direction to compensate the jitter. The experimental result shows that the pointing control system can be used for very large dynamic range up to 5 μrad. At the interested frequencies of space G.W. detection missions, between 1 mHz and 1 Hz, beam pointing stability of 6 nrad/√Hz is achieved.

  2. Beam distributions beyond RMS

    SciTech Connect

    Decker, F.

    1995-05-05

    The beam is often represented only by its position (mean) and the width (rms=root mean squared) of its distribution. To achieve these beam parameters in a noisy condition with high backgrounds, a Gaussian distribution with offset (4 parameters) is fitted to the measured beam distribution. This gives a very robust answer and is not very sensitive to background subtraction techniques. To get higher moments of the distribution, like skew or kurtosis, a fitting function with one or two more parameters is desired which would model the higher moments. In this paper we will concentrate on an Asymmetric Gaussian and a Super Gaussian function that will give something like the skew and the kurtosis of the distribution. This information is used to quantify special beam distribution. Some are unwanted like beam tails (skew) from transverse wakefields, higher order dispersive aberrations or potential well distortion in a damping ring. A negative kurtosis of a beam distribution describes a more rectangular, compact shape like with an over-compressed beam in {ital z} or a closed to double-horned energy distribution, while a positive kurtosis looks more like a ``Christmas tree`` and can quantify a beam mismatch after filamentation. Besides the advantages of the quantification, there are some distributions which need a further investigation like long flat tails which create background particles in a detector. In particle simulations on the other hand a simple rms number might grossly overestimate the effective size (e.g. for producing luminosity) due to a few particles which are far away from the core. This can reduce the practical gain of a big theoretical improvement in the beam size. {copyright} {ital 1995} {ital American} {ital Institute} {ital of} {ital Physics}.

  3. Beam distributions beyond RMS

    SciTech Connect

    Decker, F.J.

    1994-09-01

    The beam is often represented only by its position (mean) and the width (rms = root mean squared) of its distribution. To achieve these beam parameters in a noisy condition with high backgrounds, a Gaussian distribution with offset (4 parmeters) is fitted to the measured beam distribution. This gives a very robust answer and is not very sensitive to background subtraction techniques. To get higher moments of the distribution, like skew or kurtosis, a fitting function with one or two more parameters is desired which would model the higher moments. In this paper we will concentrate on an Asymmetric Gaussian and a Super Gaussian function that will give something like the skew and the kurtosis of the distribution. This information is used to quantify special beam distribution. Some are unwanted like beam tails (skew) from transverse wakefields, higher order dispersive aberrations or potential well distortion in a damping ring. A negative kurtosis of a beam distribution describes a more rectangular, compact shape like with an over-compressed beam in z or a closed to double-homed energy distribution, while a positive kurtosis looks more like a ``Christmas tree`` and can quantify a beam mismatch after filamentation. Besides the advantages of the quantification, there are some distributions which need a further investigation like long flat tails which create background particles in a detector. In particle simulations on the other hand a simple rms number might grossly overestimate the effective size (e.g. for producing luminosity) due to a few particles which are far away from the core. This can reduce the practical gain of a big theoretical improvement in the beam size.

  4. Simulations of beam-beam and beam-wire interactions in RHIC

    SciTech Connect

    Kim, Hyung J.; Sen, Tanaji; Abreu, Natalia P.; Fischer, Wolfram; /Brookhaven

    2009-02-01

    The beam-beam interaction is one of the dominant sources of emittance growth and luminosity lifetime deterioration. A current carrying wire has been proposed to compensate long-range beam-beam effects in the LHC and strong localized long-range beam-beam effects are experimentally investigated in the RHIC collider. Tune shift, beam transfer function, and beam loss rate are measured in dedicated experiments. In this paper, they report on simulations to study the effect of beam-wire interactions based on diffusive apertures, beam loss rates, and beam transfer function using a parallelized weak-strong beam simulation code (BBSIMC). The simulation results are compared with measurements performed in RHIC during 2007 and 2008.

  5. Nondiffracting transversally polarized beam.

    PubMed

    Yuan, G H; Wei, S B; Yuan, X-C

    2011-09-01

    Generation of a nondiffracting transversally polarized beam by means of transmitting an azimuthally polarized beam through a multibelt spiral phase hologram and then highly focusing by a high-NA lens is presented. A relatively long depth of focus (∼4.84λ) of the electric field with only radial and azimuthal components is achieved. The polarization of the wavefront near the focal plane is analyzed in detail by calculating the Stokes polarization parameters. It is found that the polarization is spatially varying and entirely transversally polarized, and the polarization singularity disappears at the beam center, which makes the central bright channel possible. PMID:21886250

  6. Ion beam accelerator system

    NASA Technical Reports Server (NTRS)

    Aston, Graeme (Inventor)

    1984-01-01

    A system is described that combines geometrical and electrostatic focusing to provide high ion extraction efficiency and good focusing of an accelerated ion beam. The apparatus includes a pair of curved extraction grids (16, 18) with multiple pairs of aligned holes positioned to direct a group of beamlets (20) along converging paths. The extraction grids are closely spaced and maintained at a moderate potential to efficiently extract beamlets of ions and allow them to combine into a single beam (14). An accelerator electrode device (22) downstream from the extraction grids, is at a much lower potential than the grids to accelerate the combined beam.

  7. Ion beam accelerator system

    NASA Technical Reports Server (NTRS)

    Aston, G. (Inventor)

    1981-01-01

    A system is described that combines geometrical and electrostatic focusing to provide high ion extraction efficiency and good focusing of an accelerated ion beam. The apparatus includes a pair of curved extraction grids with multiple pairs of aligned holes positioned to direct a group of beamlets along converging paths. The extraction grids are closely spaced and maintained at a moderate potential to efficiently extract beamlets of ions and allow them to combine into a single beam. An accelerator electrode device downstream from the extraction grids is at a much lower potential than the grids to accelerate the combined beam. The application of the system to ion implantation is mentioned.

  8. Beam dynamics in SLC

    SciTech Connect

    Assmann, R.W.

    1997-07-01

    Beam dynamics issues affect many different aspects of the SLC performance. This paper concentrates on the multi-particle beam dynamics in the linac and the associated limitations that are imposed on the overall SLC performance. The beam behavior in the presence of strong wakefields has been studied in order to optimize the performance and to predict the expected emittances in high performance linacs. Emittance measurements and simulations are presented for the SLAC linac and are compared in detail. As the overall SLC performance depends on the accelerator stability, the tuning stability is discussed. Measurements are shown and the consequences for the performance of the SLC are discussed.

  9. Ion beam lithography system

    DOEpatents

    Leung, Ka-Ngo

    2005-08-02

    A maskless plasma-formed ion beam lithography tool provides for patterning of sub-50 nm features on large area flat or curved substrate surfaces. The system is very compact and does not require an accelerator column and electrostatic beam scanning components. The patterns are formed by switching beamlets on or off from a two electrode blanking system with the substrate being scanned mechanically in one dimension. This arrangement can provide a maskless nano-beam lithography tool for economic and high throughput processing.

  10. Ion beam thruster shield

    NASA Technical Reports Server (NTRS)

    Power, J. L. (Inventor)

    1976-01-01

    An ion thruster beam shield is provided that comprises a cylindrical housing that extends downstream from the ion thruster and a plurality of annular vanes which are spaced along the length of the housing, and extend inwardly from the interior wall of the housing. The shield intercepts and stops all charge exchange and beam ions, neutral propellant, and sputter products formed due to the interaction of beam and shield emanating from the ion thruster outside of a fixed conical angle from the thruster axis. Further, the shield prevents the sputter products formed during the operation of the engine from escaping the interior volume of the shield.

  11. Caution -- Beam Crossing Ahead

    SciTech Connect

    Barat, Kenneth L.

    2008-04-02

    There are times when a laser beam needs to cross between tables or even go from one room to another. This presents an interesting traffic-flow and safety challenge to both the laser safety officer and laser user. Fortunately it is a challenge that has several solutions But the simplest solution may not be the best one. For example, the simplest way to get a beam from one optical table to another is just to put a sturdy tube around it. That's a permanent solution, and it completely contains the laser beam. While this is laser safe, there can be egress issues if it blocks a walkway. One comment this author often hears is, 'We can just duck under the tube.' The fire marshal, as well as the laser safety officer, might have issues with this. Especially in the case of a darkened lab, a blocked walkway can present a hazard of its own. One good solution is to transport the beam from Point A to Point B through a fiberoptic cable, when that is possible. One should easily be able to run the fiber up and over any walkway or down through a conduit on the floor. An important concern often overlooked with fibers is a label at the termination end indicating disconnection may expose one to laser radiation. Suppose there's an experiment that is usually confined to a single optical table, but sometimes needs to expand to a second table. It's inconvenient to install a permanent tube between the tables, so some sort of temporary arrangement is desirable. I have often seen people casually lay a beam tube across support arms, and remove it when it's not needed. The problem with this approach is that there's no mechanism to prevent the beam from crossing if somebody's forgotten the tube, or if the tube gets knocked out of place. A better solution is a mechanism that only allows the beam to cross when the beam protection is in place. A swing shutter, or a guillotine and swing arm, are examples (Figures 1 and 2). Another alternative is a sensor, maybe a little microswitch, that activates a

  12. Unresonant interaction of laser beams with microdroplets

    NASA Astrophysics Data System (ADS)

    Pascu, M. L.; Popescu, G. V.; Ticos, C. M.; Andrei, I. R.

    2012-03-01

    The interaction of distilled water microdroplets (volumes of 3-4μl) with pulsed laser beams emitted at 532nm is described. At 532nm the distilled water absorption is very low and the interaction of a water bead with the laser radiation is dominated by unresonant phenomena. Following the collision of the laser beam with a microdroplet in suspended/ hanging/pendant position in air, deformations and mechanical vibrations of the droplets are produced. The conditions in which the droplets lose material as a consequence of the impact with laser beams are also explored. The effects produced on the droplet were studied pulse by pulse and depend on: droplet's content, beam wavelength, power and focusing conditions, irradiation geometry and adhesion of the bead to the capillary on which it is suspended. The laser pulses energies were varied in four steps: 0.25mJ, 0.4mJ, 0.7mJ and 1mJ. The pulse full time width was 5ns and the typical focus diameter on the droplet was 90μm; the beam had a relatively low divergence around the focus point. The microdroplets and the modification/evolution of their shapes are visualised by recordings performed at 10kframes/second. Following a microdroplet interaction with the laser beam one may also produce at a controlled moment in time nanodroplets propagating at high (probably supersonic) speeds and microdroplets propagating at slower speeds. One may also produce pendant droplets of smaller dimensions than the initial one as well as micro/nano gas bubbles in the pendant droplet's material/volume. In a second set of experiment was recorded at high speed the behaviour of the microdroplets of Rhodamine 6G in distilled water at resonant interaction with similar laser pulses, at the same power levels. The optical phenomena considering that the microdroplets contents are Newtonian liquids which dominate the beads behaviour at interaction with the laser beams, are discussed.

  13. Neutron beam imaging with GEM detectors

    NASA Astrophysics Data System (ADS)

    Albani, G.; Croci, G.; Cazzaniga, C.; Cavenago, M.; Claps, G.; Muraro, A.; Murtas, F.; Pasqualotto, R.; Perelli Cippo, E.; Rebai, M.; Tardocchi, M.; Gorini, G.

    2015-04-01

    Neutron GEM-based detectors represent a new frontier of devices in neutron physics applications where a very high neutron flux must be measured such as future fusion experiments (e.g. ITER Neutral beam Injector) and spallation sources (e.g. the European Spallation source). This kind of detectors can be properly adapted to be used both as beam monitors but also as neutron diffraction detectors that could represent a valid alternative for the 3He detectors replacement. Fast neutron GEM detectors (nGEM) feature a cathode composed by one layer of polyethylene and one of aluminium (neutron scattering on hydrogen generates protons that are detected in the gas) while thermal neutron GEM detectors (bGEM) are equipped with a borated aluminium cathode (charged particles are generated through the 10B(n,α)7Li reaction). GEM detectors can be realized in large area (1 m2) and their readout can be pixelated. Three different prototypes of nGEM and one prototype of bGEM detectors of different areas and equipped with different types of readout have been built and tested. All the detectors have been used to measure the fast and thermal neutron 2D beam image at the ISIS-VESUVIO beamline. The different kinds of readout patterns (different areas of the pixels) have been compared in similar conditions. All the detectors measured a width of the beam profile consitent with the expected one. The imaging property of each detector was then tested by inserting samples of different material and shape in the beam. All the samples were correctly reconstructed and the definition of the reconstruction depends on the type of readout anode. The fast neutron beam profile reconstruction was then compared to the one obtained by diamond detectors positioned on the same beamline while the thermal neutron one was compared to the imaged obtained by cadmium-coupled x-rays films. Also efficiency and the gamma background rejection have been determined. These prototypes represent the first step towards the

  14. Simulation study of beam-beam effects in ion beams with large space charge tuneshift

    SciTech Connect

    Montag C.

    2012-05-20

    During low-energy operations with gold-gold collisions at 3.85 GeV beam energy, significant beam lifetime reductions have been observed due to the beam-beam interaction in the presence of large space charge tuneshifts. These beam-beam tuneshift parameters were about an order of magnitude smaller than during regular high energy operations. To get a better understanding of this effect, simulations have been performed. Recent results are presented.

  15. Effective conductivity and permittivity of unsaturated porous materials in the frequency range 1 mHz-1GHz.

    PubMed

    Revil, A

    2013-01-01

    A model combining low-frequency complex conductivity and high-frequency permittivity is developed in the frequency range from 1 mHz to 1 GHz. The low-frequency conductivity depends on pore water and surface conductivities. Surface conductivity is controlled by the electrical diffuse layer, the outer component of the electrical double layer coating the surface of the minerals. The frequency dependence of the effective quadrature conductivity shows three domains. Below a critical frequency fp , which depends on the dynamic pore throat size Λ, the quadrature conductivity is frequency dependent. Between fp and a second critical frequency fd , the quadrature conductivity is generally well described by a plateau when clay minerals are present in the material. Clay-free porous materials with a narrow grain size distribution are described by a Cole-Cole model. The characteristic frequency fd controls the transition between double layer polarization and the effect of the high-frequency permittivity of the material. The Maxwell-Wagner polarization is found to be relatively negligible. For a broad range of frequencies below 1 MHz, the effective permittivity exhibits a strong dependence with the cation exchange capacity and the specific surface area. At high frequency, above the critical frequency fd , the effective permittivity reaches a high-frequency asymptotic limit that is controlled by the two Archie's exponents m and n like the low-frequency electrical conductivity. The unified model is compared with various data sets from the literature and is able to explain fairly well a broad number of observations with a very small number of textural and electrochemical parameters. It could be therefore used to interpret induced polarization, induction-based electromagnetic methods, and ground penetrating radar data to characterize the vadose zone.

  16. Effective conductivity and permittivity of unsaturated porous materials in the frequency range 1 mHz–1GHz

    PubMed Central

    Revil, A

    2013-01-01

    A model combining low-frequency complex conductivity and high-frequency permittivity is developed in the frequency range from 1 mHz to 1 GHz. The low-frequency conductivity depends on pore water and surface conductivities. Surface conductivity is controlled by the electrical diffuse layer, the outer component of the electrical double layer coating the surface of the minerals. The frequency dependence of the effective quadrature conductivity shows three domains. Below a critical frequency fp, which depends on the dynamic pore throat size Λ, the quadrature conductivity is frequency dependent. Between fp and a second critical frequency fd, the quadrature conductivity is generally well described by a plateau when clay minerals are present in the material. Clay-free porous materials with a narrow grain size distribution are described by a Cole-Cole model. The characteristic frequency fd controls the transition between double layer polarization and the effect of the high-frequency permittivity of the material. The Maxwell-Wagner polarization is found to be relatively negligible. For a broad range of frequencies below 1 MHz, the effective permittivity exhibits a strong dependence with the cation exchange capacity and the specific surface area. At high frequency, above the critical frequency fd, the effective permittivity reaches a high-frequency asymptotic limit that is controlled by the two Archie's exponents m and n like the low-frequency electrical conductivity. The unified model is compared with various data sets from the literature and is able to explain fairly well a broad number of observations with a very small number of textural and electrochemical parameters. It could be therefore used to interpret induced polarization, induction-based electromagnetic methods, and ground penetrating radar data to characterize the vadose zone. PMID:23576823

  17. Decay of {sup 161m1,m2}Dy isomers under conditions of a resonance environment (Moessbauer Screen)

    SciTech Connect

    Loginov, Yu. E. Zinoviev, V. G.; Kabina, L. P.; Lisin, S. S.; Maljutenkov, Ed. I.

    2013-06-15

    The half-lives of the isomers {sup 161m1}Dy and {sup 161m2}Dy (E = 25.6 keV and T{sub 1/2} {approx} 30 ns for the former and E = 74.6 keV and T{sub 1/2} {approx} 3 ns for the latter) placed in a {sup 160}Gd{sub 2}O{sub 3} crystal lattice at T = 300 K and surrounded by stable {sup 161}Dy nuclei in the composition of {sup 161}Dy{sub 2}O{sub 3} were measured by the method of ({beta}-{gamma}) coincidences in the beta-decay process {sup 161}Tb {yields} {sup 161}Dy. Nuclei of {sup 161m1,m2}Dy were obtained according to the chain {sup 160}Gd(n, {gamma}){sup 161}Gd {yields} {sup 161}Tb {yields} {sup 161}Dy from {sup 160}Dy{sub 2}O{sub 3} weighted portions irradiated at the PWR-M reactor of the Petersburg Nuclear Physics Institute (PNPI, Gatchina, Russia). The T{sub 1/2} value observed for the isomer {sup 161m1}Dy was found to be correlated with the number of surrounding {sup 161}Dy nuclei. The presence of this correlation in {sup 161m1}Dy can be explained by the multiple resonance scattering of photons from isomer decay within the sample used. No such correlation was observed for {sup 161m2}Dy. The half-lives measured for the isomers {sup 161m1}Dy and {sup 161m2}Dy in the absence of the above environment are 29.2(1) and 3.50(1) ns, respectively.

  18. MicroRNA 648 Targets ET-1 mRNA and is cotranscriptionally regulated with MICAL3 by PAX5.

    PubMed

    Li, Chen; Gonsalves, Caryn S; Eiymo Mwa Mpollo, Marthe-Sandrine; Malik, Punam; Tahara, Stanley M; Kalra, Vijay K

    2015-02-01

    Pulmonary hypertension (PHT) is associated with high mortality in sickle cell anemia (SCA). Previously, we showed that elevated levels of placenta growth factor (PlGF) in SCA patients correlate with increased levels of the potent vasoconstrictor endothelin-1 (ET-1) and PHT. Moreover, PlGF induced the expression of ET-1 via hypoxia-inducible factor 1α. Here, we show a novel example of ET-1 posttranscriptional regulation by PlGF via action of microRNA 648 (miR-648), which is subject to transcriptional coregulation with its host gene, MICAL3 (microtubule-associated monooxygenase, calponin, and LIM domain containing 3gene). PlGF repressed expression of miR-648 in endothelial cells. Luciferase reporter assays using wild-type and mutant ET-1 3' untranslated region (UTR) constructs, and transfection of miR-648 mimics showed that miR-648 targets the 3' UTR of ET-1 mRNA. Since miR-648 is located in a 5'-proximal intron of MICAL3, we examined which of three potential promoters was responsible for its expression. The MICAL3 distal promoter (P1) was the predominant promoter used for transcription of pre-miR-648, and it was under positive control by PAX5 (paired box protein 5) transcription factor, as demonstrated by the loss and gain of function of PAX5 activity, and chromatin immunoprecipitation analysis. These studies provide a novel link wherein PlGF-mediated downregulation of PAX5 attenuates miR-648 expression leading to increased ET-1 levels that are known to induce PHT in SCA.

  19. Aberrant REDD1-mTORC1 responses to insulin in skeletal muscle from Type 2 diabetics.

    PubMed

    Williamson, David L; Dungan, Cory M; Mahmoud, Abeer M; Mey, Jacob T; Blackburn, Brian K; Haus, Jacob M

    2015-10-15

    The objective of this study was to establish whether alterations in the REDD1-mTOR axis underlie skeletal muscle insensitivity to insulin in Type 2 diabetic (T2D), obese individuals. Vastus lateralis muscle biopsies were obtained from lean, control and obese, T2D subjects under basal and after a 2-h hyperinsulinemic (40 mU·m(-2)·min(-1))-euglycemic (5 mM) clamp. Muscle lysates were examined for total REDD1, and phosphorylated Akt, S6 kinase 1 (S6K1), 4E-BP1, ERK1/2, and MEK1/2 via Western blot analysis. Under basal conditions [(-) insulin], T2D muscle exhibited higher S6K1 and ERK1/2 and lower 4E-BP1 phosphorylation (P < 0.05), as well as elevations in blood cortisol, glucose, insulin, glycosylated hemoglobin (P < 0.05) vs. lean controls. Following insulin infusion, whole body glucose disposal rates (GDR; mg/kg/min) were lower (P < 0.05) in the T2D vs. the control group. The basal-to-insulin percent change in REDD1 expression was higher (P < 0.05) in muscle from the T2D vs. the control group. Whereas, the basal-to-insulin percent change in muscle Akt, S6K1, ERK1/2, and MEK1/2 phosphorylation was significantly lower (P < 0.05) in the T2D vs. the control group. Findings from this study propose a REDD1-regulated mechanism in T2D skeletal muscle that may contribute to whole body insulin resistance and may be a target to improve insulin action in insulin-resistant individuals. PMID:26269521

  20. IL-35 Decelerates the Inflammatory Process by Regulating Inflammatory Cytokine Secretion and M1/M2 Macrophage Ratio in Psoriasis.

    PubMed

    Zhang, Junfeng; Lin, Yi; Li, Chunlei; Zhang, Xiaomei; Cheng, Lin; Dai, Lei; Wang, Youcui; Wang, Fangfang; Shi, Gang; Li, Yiming; Yang, Qianmei; Cui, Xueliang; Liu, Yi; Wang, Huiling; Zhang, Shuang; Yang, Yang; Xiang, Rong; Li, Jiong; Yu, Dechao; Wei, Yuquan; Deng, Hongxin

    2016-09-15

    IL-35 downregulates Th17 cell development and suppresses certain types of autoimmune inflammation such as collagen-induced arthritis and experimental autoimmune uveitis. Psoriasis is thought to be initiated by abnormal interactions between cutaneous keratinocytes and systemic immune cells. However, the role of IL-35 in psoriasis remains unclear. In this study, we assessed IL-35 in three well-known psoriasis models: a human keratinocyte cell line (HaCaT), a keratin 14 (K14)-vascular endothelial growth factor A (VEGF-A)-transgenic (Tg) mouse model, and an imiquimod-induced psoriasis mouse model. First, we found that IL-35 suppressed the expression of IL-6, CXCL8, and S100A7, which are highly upregulated by a mixture of five proinflammatory cytokines in HaCaT. Second, a plasmid coding for the human IL-35 sequence coated with cationic liposomes showed potent immunosuppressive effects on K14-VEGF-A-Tg and imiquimod-induced psoriasis mouse models. In the K14-VEGF-A-Tg model, our results showed that several types of proinflammatory cytokines were significantly reduced, whereas IL-10 was remarkably induced by IL-35. Compared with pcDNA3.1, there was a small number of CD4(+)IL-17(+) T cells and a large number of CD4(+)IL-10(+) and CD4(+)CD25(+)Foxp3(+) T cells in the IL-35 group. Most importantly, we found that IL-35 decreased the total number of macrophages and ratio of M1/M2 macrophages, which has not been reported previously. In addition, compared with dexamethasone, IL-35 showed long-term therapeutic efficacy. In summary, our results strongly indicate that IL-35 plays a potent immunosuppressive role in psoriasis. Thus, IL-35 has potential for development as a new therapeutic strategy for patients with chronic psoriasis and other cutaneous inflammatory diseases.