Science.gov

Sample records for 1-m beam trawl

  1. An electric beam trawl for the capture of larval lampreys

    USGS Publications Warehouse

    McLain, Alberton; Dahl, Frederick H.

    1968-01-01

    The chemicals used to control the sea lamprey, Petromyzon marinus, in the Great Lakes have drastically reduced populations of larval lampreys in tributary streams. These larvicides are too costly and difficult to apply, however, in inland lakes, estuaries, and bays. Populations of sea lampreys in these areas constitute a threat to the refinement of the control. The gear available to locate, ample, and evaluate larval populations in deep water are inefficient. Electric shockers, satisfactory for collecting ammocoetes in streams, are limited to shallow water. The use of mechanical devices such as the Petersen dredge, anchor dredge, and the orange-peel dredge is time consuming, inefficient, and relatively ineffective in providing reliable quantitative evaluation of population size and composition over large areas of bottom. A device was required to sample adequately many areas in a short period of time, regardless of the depth of water. Mobility also was essential to permit operation of the unit in the various Great Lakes and in inland waters. An electrified beam trawl has been developed that most nearly meets these requirements. It has been used successfully to collect larvae of the sea lamprey, American brook lamprey (Lampetra lamottei), northern brook lamprey (Ichthyomyzon fossor), and silver lamprey (I. unicuspis). Effectiveness of the trawl did not appear to differ with species.

  2. Impact of discards of beam trawl fishing on the nematode community from the Tagus estuary (Portugal).

    PubMed

    Franco, M A; Steyaert, M; Cabral, H N; Tenreiro, R; Chambel, L; Vincx, M; Costa, M J; Vanaverbeke, J

    2008-10-01

    The impact of dead discards, originating from beam trawl fishing on the nematode community from the Tagus estuary was investigated in terms of vertical distribution of the dominant nematode groups. Sediment cores were collected from a mud-flat from the Tagus estuary. Crangoncrangon (Linnaeus, 1758) carcasses were added to the surface of the cores, simulating the settling of dead discards on the sediment. The vertical distribution of the dominant nematode groups was determined up to 4cm deep at four different moments in time post deposition (0, 2, 4 and 6h) and compared to control cores. The C.crangon addition to the sediment led to the formation of black spots and therefore oxygen depleted areas at the sediment surface. The Chromadora/Ptycholaimellus group, normally dominant at the surface layer, migrated downwards due to their high sensibility to toxic conditions. Sabatieria presented the opposite trend and became the dominant group at the surface layer. Since Sabatieria is tolerant to oxygen stressed conditions and high sulphide concentrations, we suggest that it migrated opportunistically towards an unoccupied niche. Daptonema, Metachromadora and Terschellingia did not show any vertical migration, reflecting their tolerance to anoxic and high sulphidic conditions. Our study showed that an accumulation of dead discards at the sediment surface might therefore alter the nematode community vertical distribution. This effect is apparently closely related to toxic conditions in the sediment, induced by the deposition of C.crangon at the sediment surface. These alterations might be temporal and reflect an adaptation of the nematode community to dynamic intertidal environments. PMID:18768190

  3. Plasma behaviour with molecular beam injection in the HL-1M tokamak

    NASA Astrophysics Data System (ADS)

    Yao, Lianghua; Tang, Nianyi; Cui, Zhengying; Xu, Deming; Deng, Zhongchao; Ding, Xuantong; Luo, Junlin; Dong, Jiafu; Guo, Gancheng; Yang, Shikun; Cui, Chenghe; Xiao, Zhenggui; Liu, Dequan; Chen, Xiaoping; Yan, Longwen; Yan, Donghai; Wang, Enyao; Deng, Xiwen

    1998-04-01

    A new method of gas fuelling has been introduced in the HL-1M tokamak. The method consists of a pulsed high speed molecular beam formed by a Laval type nozzle. The velocity of the well collimated hydrogen beam is about 500 m/s. About 6 × 1019 molecules pass through the nozzle and into the vacuum chamber in each pulse. A series of helium pulses was injected into the HL-1M low density (bar ne = 4 × 1018 m-3) hydrogen plasma. With penetration depth up to 12 cm, the ramp-up rate of the electron density, dbar ne/dt, was as high as 3.1 × 1020 m-3·s-1 at steady state, and the resulting plasma density reached bar ne = 5.6 × 1019 m-3. The profile peaking factor of the electron density, Qn = ne(0)/langlenerangle of about 100 ms after helium molecular beam injection (MBI) reached a maximum value of more than 1.51. The energy confinement time τE measured by diamagnetism is 26 ms, which is over 30% longer than that of the gas puffing (GP) results under the same operational conditions. The improvement of τE and increase of Qn for MBI were comparable to those of small pellet injection (PI) in HL-1M, as well as those of slow PI in ASDEX (Kaufmann, M., et al., Nucl. Fusion 28 (1988) 827). It is argued that the peaked density profile induced by the deepened particle injection is a factor essential for the confinement improvement apart from the isotope effect of helium particles, because the density peaking factor Qn is normally less than 1.4 for GP plasma in HL-1M. The particle confinement time with MBI increased sixfold in comparison with that before injection.

  4. Functional gains of including non-commercial epibenthic taxa in coastal beam trawl surveys: A note

    NASA Astrophysics Data System (ADS)

    Brind'Amour, Anik; Rouyer, Armelle; Martin, Jocelyne

    2009-05-01

    The development of ecosystem-based indicators requires the broadening of a view of the community, from fish species to all the species (macrobenthic and fish) correctly captured by a given sampling gear. Many scientific surveys already have such integrated databases. The present note aims to demonstrate that existing databases, herein from dedicated coastal nursery surveys, are actually underexploited. Such databases contain information on non-commercial taxa, which could greatly improve our knowledge on the organisation and functioning of coastal ecosystems. Using two datasets, a "complete" dataset composed of commercial and not-commercial epibenthic trawled species (fish and invertebrate) and a "subset" dataset characterized by commercial and routinely surveyed species (mainly fish and cephalopods), different measures of functional diversity are compared to identify the functional gains of including epibenthic species. The results show that, when included in the analyses, epibenthic taxa provide gains of functional information, associated mainly with the community feeding traits, i.e. organisms composing the primary and secondary consumer levels of the coastal nursery food web. Failure to include some of the primary (zooplanktivores and suspension feeders) and secondary consumers (detritivores-scavengers) in coastal survey analyses may, for instance, hamper our understanding of energy flux between the benthic and water column compartments of these ecosystems. The results also suggest that the exclusion of some taxa associated with these two food web compartments, may lead to the underestimation of the functional redundancy in coastal ecosystems.

  5. Design and performance of a beam line with a 1 m focal length toroidal grating monochromator at the ACO storage ring

    NASA Astrophysics Data System (ADS)

    Gudat, W.; Kisker, E.; Rothberg, G. M.; Depautex, C.

    We describe a new beam line at the ACO storage ring for solid state photoelectron spectorscopy incorporating a 1 m focal length toroidal grating monochromator for the photon energy range 6 eV to 120 eV custom-built by Jobin-Yvon Instruments S.A. Test results for the TGM with laboratory line light sources are reported as well as performance data with synchrotron radiation.

  6. The dynamics of small-scale patchiness of plaice and sole as reflected in the catch rates of the Dutch beam trawl fleet and its implications for the fleet dynamics

    NASA Astrophysics Data System (ADS)

    Poos, Jan-Jaap; Rijnsdorp, Adriaan D.

    2007-07-01

    Catch rates of sole Solea solea and plaice Pleuronectes platessa in the Dutch beam trawl fleet operating in the North Sea show spatio-temporal variation. The variation in catch rates reflects differences in abundance of the species. Up to 45% of the variation in catch rates can be explained by the time of day of the catch, the engine power of the vessel and the migration cycles of the species. Also, spatial covariance was found in the residual variation for both species using variograms and covariance functions. The ranges of the spatial structure were found to be between approximately 20 to 45 nautical miles, indicating patchy distribution of the species. No differences in the ranges of the spatial structures were found between different seasons. Cross-covariance analysis shows the patches lasted up to two weeks. The implication of the spatial pattern in flatfish for the dynamics of effort allocation is discussed.

  7. Trophic look at soft-bottom communities - Short-term effects of trawling cessation on benthos

    NASA Astrophysics Data System (ADS)

    Dannheim, Jennifer; Brey, Thomas; Schröder, Alexander; Mintenbeck, Katja; Knust, Rainer; Arntz, Wolf E.

    2014-01-01

    The trophic structure of the German Bight soft-bottom benthic community was evaluated for potential changes after cessation of bottom trawling. Species were collected with van-Veen grabs and beam trawls. Trophic position (i.e. nitrogen stable isotope ratios, δ15N) and energy flow (i.e. species metabolism approximated by body mass scaled abundance) of dominant species were compared in trawled areas and an area protected from fisheries for 14 months in order to detect trawling cessation effects by trophic characteristics. At the community level, energy flow was lower in the protected area, but we were unable to detect significant changes in trophic position. At the species level energy flow in the protected area was lower for predating/scavenging species but higher for interface feeders. Species trophic positions of small predators/scavengers were lower and of deposit feeders higher in the protected area. Major reasons for trophic changes after trawling cessation may be the absence of artificial and additional food sources from trawling likely to attract predators and scavengers, and the absence of physical sediment disturbance impacting settlement/survival of less mobile species and causing a gradual shift in food availability and quality. Our results provide evidence that species or community energy flow is a good indicator to detect trawling induced energy-flow alterations in the benthic system, and that in particular species trophic properties are suitable to capture subtle and short-term changes in the benthos following trawling cessation.

  8. 77 FR 27411 - Sea Turtle Conservation; Shrimp Trawling Requirements

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-05-10

    ... presenting various approaches to regulating trawl fisheries in the Atlantic Ocean (74 FR 21627). The scoping... skimmer trawls, pusher-head trawls, and wing nets (butterfly trawls) rigged for fishing to use turtle... (butterfly trawls). For example, on May 8, 2009, NMFS published a notice of intent (NOI) to prepare...

  9. BEAMing and Droplet Digital PCR Analysis of Mutant IDH1 mRNA in Glioma Patient Serum and Cerebrospinal Fluid Extracellular Vesicles

    PubMed Central

    Chen, Walter W; Balaj, Leonora; Liau, Linda M; Samuels, Michael L; Kotsopoulos, Steve K; Maguire, Casey A; LoGuidice, Lori; Soto, Horacio; Garrett, Matthew; Zhu, Lin Dan; Sivaraman, Sarada; Chen, Clark; Wong, Eric T; Carter, Bob S; Hochberg, Fred H; Breakefield, Xandra O; Skog, Johan

    2013-01-01

    Development of biofluid-based molecular diagnostic tests for cancer is an important step towards tumor characterization and real-time monitoring in a minimally invasive fashion. Extracellular vesicles (EVs) are released from tumor cells into body fluids and can provide a powerful platform for tumor biomarkers because they carry tumor proteins and nucleic acids. Detecting rare point mutations in the background of wild-type sequences in biofluids such as blood and cerebrospinal fluid (CSF) remains a major challenge. Techniques such as BEAMing (beads, emulsion, amplification, magnetics) PCR and droplet digital PCR (ddPCR) are substantially more sensitive than many other assays for mutant sequence detection. Here, we describe a novel approach that combines biofluid EV RNA and BEAMing RT-PCR (EV-BEAMing), as well droplet digital PCR to interrogate mutations from glioma tumors. EVs from CSF of patients with glioma were shown to contain mutant IDH1 transcripts, and we were able to reliably detect and quantify mutant and wild-type IDH1 RNA transcripts in CSF of patients with gliomas. EV-BEAMing and EV-ddPCR represent a valuable new strategy for cancer diagnostics, which can be applied to a variety of biofluids and neoplasms. PMID:23881452

  10. Impacts of trawling on benthic macro-fauna and -flora of the Spencer Gulf prawn fishing grounds

    NASA Astrophysics Data System (ADS)

    Svane, Ib; Hammett, Zoe; Lauer, Peter

    2009-05-01

    The overall effects of trawling on benthic habitats and their assemblages are dependent on the distribution and intensity of trawl effort. The benthic habitats of the Spencer Gulf prawn trawling grounds are subjected to known variable levels of trawling disturbance recorded from fisher's logbooks. These habitats have not been quantitatively investigated. The aim of the study was firstly to characterise the macro-faunal and -floral assemblages and secondly, to comparatively assess trawl impact by testing the null hypothesis of no differences between five sites exposed to different intensity of trawl effort. The distribution and abundance of benthic macro-fauna and -flora were studied at two sampling resolutions by using beam trawl sampling (˜10,000 m 2) and underwater stereophotography (˜4.5 m 2) at five sites with different levels of trawl disturbance (effort). The results showed that the Spencer Gulf prawn trawling grounds are characterised by sandy sediments with a low content of silt and clay, with the exception of one site with very fine gravel. Biomass, abundance and cover of macro-fauna and -flora were generally low throughout, but with large differences among sites. Biomass, abundance and cover were found to be negatively correlated to both trawl hours from 1994-1998 and during the period of study. ANOSIM and SIMPER analyses using biomass, abundance and percentage cover as variables showed significant differences between sites with eight species or taxonomic groups contributing more than 10% to the observed similarity within sites. The two northern sites were dominated by sponges and the bearded mussel, Trichomya hirsutus, and the southern hammer oyster, Malleus meridianus. Other species that contributed to the similarity within sites were the ascidian, Polycarpa viridis, mobile epifauna (the blue swimmer crab, Portunus pelagicus, and the western king prawn, Penaeus (Melicertus) latisulcatus) and demersal fish species (Degens leatherjacket, Thamnaconus

  11. USE OF SMALL OTTER TRAWLS IN COASTAL BIOLOGICAL SURVEYS

    EPA Science Inventory

    Ecological surveys using small otter trawls provide useful and informative data on demersal fish and epibenthic macroinvertebrates of coastal soft bottom areas. This report presents recommendations for selecting and using small otter trawls in coastal biological surveys and sugge...

  12. 50 CFR 660.130 - Trawl fishery-management measures.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Trawl fishery-management measures. 660.130 Section 660.130 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND... Groundfish-Limited Entry Trawl Fisheries § 660.130 Trawl fishery—management measures. (a) General....

  13. 50 CFR 660.130 - Trawl fishery-management measures.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Trawl fishery-management measures. 660.130 Section 660.130 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND... Groundfish-Limited Entry Trawl Fisheries § 660.130 Trawl fishery—management measures. (a) General....

  14. 50 CFR 660.130 - Trawl fishery-management measures.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Trawl fishery-management measures. 660.130 Section 660.130 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND... Groundfish-Limited Entry Trawl Fisheries § 660.130 Trawl fishery—management measures. (a) General....

  15. 50 CFR 622.25 - Exemptions for Gulf groundfish trawling.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE FISHERIES OF THE CARIBBEAN, GULF OF MEXICO, AND SOUTH ATLANTIC Reef Fish Resources of the Gulf of Mexico § 622.25 Exemptions for Gulf groundfish trawling. Gulf groundfish trawling means fishing in the Gulf EEZ by a vessel that uses a bottom trawl, the unsorted......

  16. A ‘Simple Anterior Fish Excluder’ (SAFE) for Mitigating Penaeid-Trawl Bycatch

    PubMed Central

    McHugh, Matthew J.; Broadhurst, Matt K.; Sterling, David J.; Millar, Russell B.

    2015-01-01

    Various plastic strips and sheets (termed ‘simple anterior fish excluders’−SAFEs) were positioned across the openings of penaeid trawls in attempts at reducing the unwanted bycatches of small teleosts. Initially, three SAFEs (a single wire without, and with small and large plastic panels) were compared against a control (no SAFE) on paired beam trawls. All SAFEs maintained targeted Metapenaeus macleayi catches, while the largest plastic SAFE significantly reduced total bycatch by 51% and the numbers of Pomatomus saltatrix, Mugil cephalus and Herklotsichthys castelnaui by up to 58%. A redesigned SAFE (‘continuous plastic’) was subsequently tested (against a control) on paired otter trawls, significantly reducing total bycatch by 28% and P. saltatrix and H. castelnaui by up to 42%. The continuous-plastic SAFE also significantly reduced M. macleayi catches by ~7%, but this was explained by ~5% less wing-end spread, and could be simply negated through otter-board refinement. Further work is required to refine the tested SAFEs, and to quantify species-specific escape mechanisms. Nevertheless, the SAFE concept might represent an effective approach for improving penaeid-trawl selectivity. PMID:25837892

  17. A 'simple anterior fish excluder' (SAFE) for mitigating penaeid-trawl bycatch.

    PubMed

    McHugh, Matthew J; Broadhurst, Matt K; Sterling, David J; Millar, Russell B

    2015-01-01

    Various plastic strips and sheets (termed 'simple anterior fish excluders'-SAFEs) were positioned across the openings of penaeid trawls in attempts at reducing the unwanted bycatches of small teleosts. Initially, three SAFEs (a single wire without, and with small and large plastic panels) were compared against a control (no SAFE) on paired beam trawls. All SAFEs maintained targeted Metapenaeus macleayi catches, while the largest plastic SAFE significantly reduced total bycatch by 51% and the numbers of Pomatomus saltatrix, Mugil cephalus and Herklotsichthys castelnaui by up to 58%. A redesigned SAFE ('continuous plastic') was subsequently tested (against a control) on paired otter trawls, significantly reducing total bycatch by 28% and P. saltatrix and H. castelnaui by up to 42%. The continuous-plastic SAFE also significantly reduced M. macleayi catches by ~7%, but this was explained by ~5% less wing-end spread, and could be simply negated through otter-board refinement. Further work is required to refine the tested SAFEs, and to quantify species-specific escape mechanisms. Nevertheless, the SAFE concept might represent an effective approach for improving penaeid-trawl selectivity. PMID:25837892

  18. Ideal free distribution or dynamic game? An agent-based simulation study of trawling strategies with varying information

    NASA Astrophysics Data System (ADS)

    Beecham, J. A.; Engelhard, G. H.

    2007-10-01

    An ecological economic model of trawling is presented to demonstrate the effect of trawling location choice strategy on net input (rate of economic gain of fish caught per time spent less costs). Fishing location choice is considered to be a dynamic process whereby trawlers chose from among a repertoire of plastic strategies that they modify if their gains fall below a fixed proportion of the mean gains of the fleet as a whole. The distribution of fishing across different areas of a fishery follows an approximate ideal free distribution (IFD) with varying noise due to uncertainty. The least-productive areas are not utilised because initial net input never reaches the mean yield of better areas subject to competitive exploitation. In cases, where there is a weak temporal autocorrelation between fish stocks in a specific location, a plastic strategy of local translocation between trawls mixed with longer-range translocation increases realised input. The trawler can change its translocation strategy in the light of information about recent trawling success compared to its long-term average but, in contrast to predictions of the Marginal Value Theorem (MVT) model, does not know for certain what it will find by moving, so may need to sample new patches. The combination of the two types of translocation mirrored beam-trawling strategies used by the Dutch fleet and the resultant distribution of trawling effort is confirmed by analysis of historical effort distribution of British otter trawling fleets in the North Sea. Fisheries exploitation represents an area where dynamic agent-based adaptive models may be a better representation of the economic dynamics of a fleet than classically inspired optimisation models.

  19. Assessing prey fish populations in Lake Michigan: Comparison of simultaneous acoustic-midwater trawling with bottom trawling

    USGS Publications Warehouse

    Fabrizio, Mary C.; Adams, Jean V.; Curtis, Gary L.

    1997-01-01

    The Lake Michigan fish community has been monitored since the 1960s with bottom trawls, and since the late 1980s with acoustics and midwater trawls. These sampling tools are limited to different habitats: bottom trawls sample fish near bottom in areas with smooth substrates, and acoustic methods sample fish throughout the water column above all substrate types. We compared estimates of fish densities and species richness from daytime bottom trawling with those estimated from night-time acoustic and midwater trawling at a range of depths in northeastern Lake Michigan in summer 1995. We examined estimates of total fish density as well as densities of alewife Alosa pseudoharengus (Wilson), bloater Coregonus hoyi (Gill), and rainbow smelt Osmerus mordax (Mitchell) because these three species are the dominant forage of large piscivores in Lake Michigan. In shallow water (18 m), we detected more species but fewer fish (in fish/ha and kg/ha) with bottom trawls than with acoustic-midwater trawling. Large aggregations of rainbow smelt were detected by acoustic-midwater trawling at 18 m and contributed to the differences in total fish density estimates between gears at this depth. Numerical and biomass densitites of bloaters from all depths were significantly higher when based on bottom trawl samples than on acoustic-midwater trawling, and this probably contributed to the observed significant difference between methods for total fish densities (kg/ha) at 55 m. Significantly fewer alewives per ha were estimated from bottom trawling than from acoustics-midwater trawling at 55 m, and in deeper waters, no alewives were taken by bottom trawling. The differences detected between gears resulted from alewife, bloater, and rainbow smelt vertical distributions, which varied with lake depth and time of day. Because Lake Michigan fishes are both demersal and pelagic, a single sampling method cannot be used to completely describe characteristics of the fish community.

  20. 77 FR 38266 - Sea Turtle Conservation; Shrimp Trawling Requirements; Public Hearing

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-27

    .... ADDRESSES: As published on May 10, 2012 (77 FR 27411), you may submit comments on this proposed rule... and require all skimmer trawls, pusher-head trawls, and wing nets (butterfly trawls) rigged...

  1. 77 FR 37647 - Sea Turtle Conservation; Shrimp Trawling Requirements; Public Hearing Notification

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-22

    ... on May 10, 2012 (77 FR 27411), you may submit comments on this proposed rule, identified by 0648-BC10... and require all skimmer trawls, pusher-head trawls, and wing nets (butterfly trawls) rigged...

  2. Effects of bottom trawling on fish foraging and feeding.

    PubMed

    Johnson, Andrew Frederick; Gorelli, Giulia; Jenkins, Stuart Rees; Hiddink, Jan Geert; Hinz, Hilmar

    2015-01-22

    The effects of bottom trawling on benthic invertebrates include reductions of biomass, diversity and body size. These changes may negatively affect prey availability for demersal fishes, potentially leading to reduced food intake, body condition and yield of fishes in chronically trawled areas. Here, the effect of trawling on the prey availability and diet of two commercially important flatfish species, plaice (Pleuronectes platessa) and dab (Limanda limanda), was investigated over a trawling intensity gradient in the Irish Sea. Previous work in this area has shown that trawling negatively affects the condition of plaice but not of dab. This study showed that reductions in local prey availability did not result in reduced feeding of fish. As trawling frequency increased, both fish and prey biomass declined, such that the ratio of fish to prey remained unchanged. Consequently, even at frequently trawled sites with low prey biomass, both plaice and dab maintained constant levels of stomach fullness and gut energy contents. However, dietary shifts in plaice towards energy-poor prey items were evident when prey species were analysed individually. This, together with a potential decrease in foraging efficiency due to low prey densities, was seen as the most plausible cause for the reduced body condition observed. Understanding the relationship between trawling, benthic impacts, fish foraging and resultant body condition is an important step in designing successful mitigation measures for future management strategies in bottom trawl fisheries. PMID:25621336

  3. Effects of bottom trawling on fish foraging and feeding

    PubMed Central

    Johnson, Andrew Frederick; Gorelli, Giulia; Jenkins, Stuart Rees; Hiddink, Jan Geert; Hinz, Hilmar

    2015-01-01

    The effects of bottom trawling on benthic invertebrates include reductions of biomass, diversity and body size. These changes may negatively affect prey availability for demersal fishes, potentially leading to reduced food intake, body condition and yield of fishes in chronically trawled areas. Here, the effect of trawling on the prey availability and diet of two commercially important flatfish species, plaice (Pleuronectes platessa) and dab (Limanda limanda), was investigated over a trawling intensity gradient in the Irish Sea. Previous work in this area has shown that trawling negatively affects the condition of plaice but not of dab. This study showed that reductions in local prey availability did not result in reduced feeding of fish. As trawling frequency increased, both fish and prey biomass declined, such that the ratio of fish to prey remained unchanged. Consequently, even at frequently trawled sites with low prey biomass, both plaice and dab maintained constant levels of stomach fullness and gut energy contents. However, dietary shifts in plaice towards energy-poor prey items were evident when prey species were analysed individually. This, together with a potential decrease in foraging efficiency due to low prey densities, was seen as the most plausible cause for the reduced body condition observed. Understanding the relationship between trawling, benthic impacts, fish foraging and resultant body condition is an important step in designing successful mitigation measures for future management strategies in bottom trawl fisheries. PMID:25621336

  4. 78 FR 9024 - Sea Turtle Conservation; Shrimp Trawling Requirements

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-02-07

    ... (77 FR 27411) that would require all skimmer trawls, pusher-head trawls, and wing nets (butterfly..., 2012 (77 FR 27411), is withdrawn as of February 7, 2013. FOR FURTHER INFORMATION CONTACT: Michael... Fisheries was ] published on May 18, 2012 (77 FR 29636). The comment periods for the proposed rule and...

  5. 50 CFR 660.130 - Trawl fishery-management measures.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Trawl fishery-management measures. 660.130 Section 660.130 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry Trawl Fisheries §...

  6. 50 CFR 660.130 - Trawl fishery-management measures.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Trawl fishery-management measures. 660.130 Section 660.130 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West Coast Groundfish-Limited Entry Trawl Fisheries...

  7. Effects of trawl selectivity and genetic parameters on fish body length under long-term trawling

    NASA Astrophysics Data System (ADS)

    Yu, Yang; Sun, Peng; Cui, He; Sheng, Huaxiang; Zhao, Fenfang; Tang, Yanli; Chen, Zelin

    2015-10-01

    Long-term fishing pressure affects the biological characteristics of exploited fish stocks. The biological characteristics of hairtail ( Trichiurus lepturus) in the East China Sea are unable to recover because of long-term trawling. Fishing induces evolutionary effects on the fish's biological characteristics. Evidence of these changes includes small size at age, a shift to earlier age structure, and early maturation. Natural and artificial selection usually affect the fish's life history. Selection can induce different chances of reproduction, and individual fish can give a different genetic contribution to the next generation. In this study, analysis of time-dependent probability of significance and test of sensitivity were used to explore the effects of fish exploitation rate, mesh size, and heritability with long-term trawling. Results showed that fishing parameters were important drivers to exploited fish population. However, genetic traits altered by fishing were slow, and the changes in biological characteristics were weaker than those caused by fishing selection. Exploitation rate and mesh size exhibited similar evolutionary trend tendency under long-term fishing. The time-dependent probability of significance trend showed a gradual growth and tended to be stable. Therefore, the direction of fishing-induced evolution and successful management of fish species require considerable attention to contribute to sustainable fisheries in China.

  8. Size selection of Antarctic krill (Euphausia superba) in trawls.

    PubMed

    Krag, Ludvig A; Herrmann, Bent; Iversen, Svein A; Engås, Arill; Nordrum, Sigve; Krafft, Bjørn A

    2014-01-01

    Trawlers involved in the Antarctic krill (Euphausia superba) fishery use different trawl designs, and very little is known about the size selectivity of the various gears. Size selectivity quantifies a given trawl's ability to catch different sizes of a harvested entity, and this information is crucial for the management of a sustainable fishery. We established a morphological description of krill and used it in a mathematical model (FISHSELECT) to predict the selective potential of diamond meshes measuring 5-40 mm with mesh opening angles (oa) ranging from 10 to 90°. We expected the majority of krill to encounter the trawl netting in random orientations due to high towing speeds and the assumed swimming capabilities of krill. However, our results indicated that size selectivity of krill is a well-defined process in which individuals encounter meshes at an optimal orientation for escapement. The simulation-based results were supported by data from experimental trawl hauls and underwater video images of the mesh geometry during fishing. Herein we present predictions for the size selectivity of a range of netting configurations relevant to the krill fishery. The methods developed and results described are important tools for selecting optimal trawl designs for krill fishing. PMID:25105960

  9. 75 FR 13081 - Fisheries off West Coast States; Pacific Coast Groundfish Fishery; Trawl Rationalization Program

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-03-18

    ... National Oceanic and Atmospheric Administration RIN 0648-XRO1 Fisheries off West Coast States; Pacific Coast Groundfish Fishery; Trawl Rationalization Program AGENCY: National Marine Fisheries Service (NMFS... trawl rationalization program that would affect the limited entry trawl fishery of the Pacific...

  10. 30 CFR 250.1741 - If I drag a trawl across a site, what requirements must I meet?

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... diameter or larger, no closer than 100 feet to the either side of the pipeline, Trawl parallel to the... pipeline, Trawl parallel to the pipeline. Do not trawl across the pipeline. (4) Unburied active pipelines..., parallel to the pipeline, (h) You must ensure that any trawling contractor you may use: (1) Has...

  11. Double passing the Kitt Peak 1-m Fourier transform spectrometer

    NASA Technical Reports Server (NTRS)

    Jennings, D. E.; Hubbard, R.; Brault, J. W.

    1985-01-01

    Attention is given to a simple technique for performing the conversion of the Kitt Peak 1-m Fourier transform spectrometer's dual input/output optical configuration to a double pass configuration that improves spectral resolution by a factor of 2. The modification is made by placing a flat mirror in the output beam from each cat's eye, retroreflecting the beams back through the cat's eyes to the first beam splitter. A single detector is placed at the second input port, which then becomes the instrument's output.

  12. 50 CFR 660.120 - Trawl fishery-crossover provisions.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Trawl fishery-crossover provisions. 660.120 Section 660.120 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West...

  13. 50 CFR 622.47 - Gulf groundfish trawl fishery.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 12 2012-10-01 2012-10-01 false Gulf groundfish trawl fishery. 622.47 Section 622.47 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE FISHERIES OF THE CARIBBEAN, GULF, AND SOUTH...

  14. 50 CFR 660.120 - Trawl fishery-crossover provisions.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Trawl fishery-crossover provisions. 660.120 Section 660.120 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West...

  15. 50 CFR 660.120 - Trawl fishery-crossover provisions.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Trawl fishery-crossover provisions. 660.120 Section 660.120 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West...

  16. 50 CFR 622.47 - Gulf groundfish trawl fishery.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 8 2010-10-01 2010-10-01 false Gulf groundfish trawl fishery. 622.47 Section 622.47 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE FISHERIES OF THE CARIBBEAN, GULF, AND SOUTH...

  17. Job Satisfaction in the Shrimp Trawl Fisheries of Chennai, India

    ERIC Educational Resources Information Center

    Bavinck, Maarten

    2012-01-01

    Shrimp trawling represents an important fishing metier in South India, generating high levels of employment and economic value. It is also a contested metier, ostensibly contributing to environmental degradation and social inequality. This paper investigates the job satisfaction of crew members (captains and workers) on board the shrimp trawlers…

  18. Job Satisfaction in the Shrimp Trawl Fisheries of Vietnam

    ERIC Educational Resources Information Center

    Sinh, Le Xuan

    2012-01-01

    This paper investigates the job satisfaction of small-scale shrimp trawl fishers in the vicinity of Camau National Park in southern Vietnam. The research sample consisted of 77 fishers who belong to a growing population of shrimp fishers in the region. The results suggest that 60% would change their fishing metier, 78% would leave fishing for…

  19. 50 CFR 660.120 - Trawl fishery-crossover provisions.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Trawl fishery-crossover provisions. 660.120 Section 660.120 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West...

  20. 50 CFR 660.112 - Trawl fishery-prohibitions.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Trawl fishery-prohibitions. 660.112 Section 660.112 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West...

  1. 50 CFR 660.111 - Trawl fishery-definitions.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Trawl fishery-definitions. 660.111 Section 660.111 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West...

  2. 50 CFR 660.111 - Trawl fishery-definitions.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Trawl fishery-definitions. 660.111 Section 660.111 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West...

  3. 50 CFR 660.120 - Trawl fishery-crossover provisions.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Trawl fishery-crossover provisions. 660.120 Section 660.120 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West...

  4. 50 CFR 622.47 - Gulf groundfish trawl fishery.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 10 2011-10-01 2011-10-01 false Gulf groundfish trawl fishery. 622.47 Section 622.47 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE FISHERIES OF THE CARIBBEAN, GULF, AND SOUTH...

  5. Energy direct inputs and greenhouse gas emissions of the main industrial trawl fishery of Brazil.

    PubMed

    Port, Dagoberto; Perez, Jose Angel Alvarez; de Menezes, João Thadeu

    2016-06-15

    This study provides first-time estimates of direct fuel inputs and greenhouse gas emissions produced by the trawl fishing fleet operating off southeastern and southern Brazil. Analyzed data comprised vessel characteristics, landings, fishing areas and trawling duration of 10,144 fishing operations monitored in Santa Catarina State from 2003 to 2011. Three main fishing strategies were differentiated: 'shrimp trawling', 'slope trawling' and 'pair trawling'. Jointly these operations burned over 141.5millionl of diesel to land 342.3millionkg of fish and shellfish. Annually, 0.36-0.48l were consumed for every kg of catch landed. Because all fishing strategies relied on multispecific catches to raise total incomes, estimates of fuel use intensity were generally low but increased 316-1025% if only nominal targets were considered. In nine years, trawling operations emitted 104.07GgC to the atmosphere, between 36,800-49,500tons CO2 per year. PMID:27068561

  6. Energy direct inputs and greenhouse gas emissions of the main industrial trawl fishery of Brazil.

    PubMed

    Port, Dagoberto; Perez, Jose Angel Alvarez; de Menezes, João Thadeu

    2014-11-15

    This study provides first-time estimates of direct fuel inputs and greenhouse gas emissions produced by the trawl fishing fleet operating off southeastern and southern Brazil. Analyzed data comprised vessel characteristics, landings, fishing areas and trawling duration of 10,144 fishing operations monitored in Santa Catarina State from 2003 to 2011. Three main fishing strategies were differentiated: 'shrimp trawling', 'slope trawling' and 'pair trawling'. Jointly these operations burned over 9.1 million liters of diesel to land 342.3 million kilograms of fish and shellfish. Annually, 0.023-0.031 l were consumed for every kg of catch landed. Because all fishing strategies relied on multispecific catches to raise total incomes, estimates of fuel use intensity were generally low but increased 200-900% if only nominal targets were considered. In nine years, trawling operations emitted 6.69 GgC to the atmosphere, between 2300 and 3300 tons CO2 per year. PMID:25173595

  7. Improving benthic monitoring by combining trawl and grab surveys.

    PubMed

    Jørgensen, Lis Lindal; Renaud, Paul E; Cochrane, Sabine K J

    2011-06-01

    Environmental monitoring is performed on seafloor communities since these organisms are relatively stationary and integrate the environmental conditions over many years. Standard practices involve sampling by grab. Epifaunal taxa, often missed by grab sampling, are likely to have different ecological functions. We investigate how current environmental assessments represent the benthic community as a whole by comparing taxonomic and functional components sampled by grabs and epibenthic trawls. Faunal communities sampled by trawl (filtrating or predator, epifauna) and grab (infaunal, detrivore) differs widely by sampling distinct functional components, and these may be expected to respond to different human-induced stressors. Neither component appears to be a good surrogate for the community as a whole. We suggest a benthic monitoring by combining both techniques. Sustainable ecosystem functioning is intimately tied to the health of both components of the benthic community, and is recognized as an important goal by signatories of the Convention on Biological Diversity. PMID:21507428

  8. Evaluation of Midwater Trawl Selectivity and its Influence on Acoustic-Based Fish Population Surveys

    NASA Astrophysics Data System (ADS)

    Williams, Kresimir

    Trawls are used extensively during fisheries abundance surveys to derive estimates of fish density and, in the case of acoustic-based surveys, to identify acoustically sampled fish populations. However, trawls are selective in what fish they retain, resulting in biased estimates of density, species, and size compositions. Selectivity of the midwater trawl used in acoustic-based surveys of walleye pollock (Theragra chalcogramma) was evaluated using multiple methods. The effects of trawl selectivity on the acoustic-based survey abundance estimates and the stock assessment were evaluated for the Gulf of Alaska walleye pollock population. Selectivity was quantified using recapture, or pocket, nets attached to the outside of the trawl. Pocket net catches were modeled using a hierarchical Bayesian model to provide uncertainty in selectivity parameter estimates. Significant under-sampling of juvenile pollock by the midwater trawl was found, with lengths at 50% retention ranging from 14--26 cm over three experiments. Escapement was found to be light dependent, with more fish escaping in dark conditions. Highest escapement rates were observed in the aft of the trawl near to the codend though the bottom panel of the trawl. The behavioral mechanisms involved in the process of herding and escapement were evaluated using stereo-cameras, a DIDSON high frequency imaging sonar, and pocket nets. Fish maintained greater distances from the trawl panel during daylight, suggesting trawl modifications such as increased visibility of netting materials may evoke stronger herding responses and increased retention of fish. Selectivity and catchability of pollock by the midwater trawl was also investigated using acoustic density as an independent estimate of fish abundance to compare with trawl catches. A modeling framework was developed to evaluate potential explanatory factors for selectivity and catchability. Selectivity estimates were dependent on which vessel was used for the survey

  9. Evaluation of trawls for monitoring and harvesting fish populations in Lake Oahe, South Dakota

    USGS Publications Warehouse

    Nelson, William R.; Boussu, Marvin S.

    1974-01-01

    Trawls of various designs and sizes were compared to evaluate their use for monitoring and harvesting fish populations in Lake Oahe. Catches of a 10.7-m semiballoon trawl, selected to monitor changes in the fish populations from 1965 to 1970, showed a downward trend in the abundance of all species, except walleye; the decline was largest in the lower area of the reservoir with a slight increase in the upper area. Of two trawl designs tested, semiballoon trawls captured more fish per hour than high-rise trawls, and a 15.9-m semiballoon trawl with a 3.8-cm mesh cod end captured fish at the highest and most consistent rate. The size and species composition of fish caught in small-mesh trawls differed from those caught in trap nets. Trawl catches were too small to recommend or warrant their use as a commercial fishing gear, but the use of both small mesh trawls and trap nets should improve accuracy in monitoring fish populations in this reservoir.

  10. Satellite-based quantification of the bottom trawling induced sediment resuspension over an entire shelf

    NASA Astrophysics Data System (ADS)

    Oberle, F. J.; Cheriton, O. M.; Hanebuth, T. J. J.

    2014-12-01

    The effect of bottom trawling activities on continental shelves has been a topic of interest for both fishery resource studies and ecological impact studies for a while. However, the impact of demersal fishing gear was almost exclusively studied from a perspective of its effects on benthic fauna, but recently it has also attracted attention due to its profound impact on sediments. Here we present the first study to quantify the trawling-induced sediment resuspension effect by combining satellite-based spatial patterns of bottom trawling with quantitative measurements of induced sediment plumes. This study examined high-resolution GPS vessel monitoring data from one year (2011-2012) to quantify the sedimentary budget caused by bottom trawling activity for the entire NW Iberian shelf, an area that is widely affected by chronic (continuous and intensive) commercial bottom trawling and is exemplary for many other narrow shelves worldwide. By filtering the GPS data by vessel type, vessel speed, and geometry of the trawl path, we resolved geographically detailed bottom trawling activities with varying local trawling intensities depending both on legal restrictions and bedrock geomorphology. Initial results show that trawling-induced resuspended sediments mark a significant if not dominant factor for a source to sink sedimentary budget, as they are calculated to be approximately two times as large as fluvial sedimentary input to the shelf. Ultimately, these results not only allow for a trawling affected sediment budget but also significantly help with marine management decisions by allowing to predict the mobilization and transport of sediment caused by bottom trawling gear at the level of a specific fishing fleet or ecosystem.

  11. The impact of shrimp trawling and associated sediment resuspension in mud dominated, shallow estuaries

    SciTech Connect

    Dellapenna, Timothy M.; Allison, Mead A.; Gill, Gary A.; Lehman, Ronald D.; Warnken, Kent W.

    2006-07-18

    To address the relative importance of shrimp trawling on seabed resuspension and bottom characteristics in shallow estuaries, a series of disturbance and monitoring experiments were conducted at a bay bottom mud site (2.5 m depth) in Galveston Bay, Texas in July 1998 and May 1999. Based on pre- and post-trawl sediment profiles of 7Be; pore water dissolved oxygen and sulfide concentration; and bulk sediment properties, it was estimated that the trawl rig, including the net, trawl doors, and ‘‘tickler chain,’’ excavate the seabed to a maximum depth of approximately 1.5 cm, with most areas displaying considerably less disturbance. Water column profile data in the turbid plume left by the trawl in these underconsolidated muds (85e90% porosity; <0.25 kPa undrained shear strength) demonstrate that suspended sediment inventories of up to 85e90 mg/cm2 are produced immediately behind the trawl net; an order of magnitude higher than pre-trawl inventories and comparable to those observed during a 9e10 m/s wind event at the study site. Plume settling and dispersion caused suspended sediment inventories to return to pre-trawl values about 14 min after trawl passage in two separate experiments, indicating particles re-settle primarily as flocs before they can be widely dispersed by local currents. As a result of the passage of the trawl rig across the seabed, shear strength of the sediment surface showed no significant increase, suggesting that bed armoring is not taking place and the trawled areas will not show an increase in critical shear stress.

  12. Vanishing of {1}/{m} corrections at threshold

    NASA Astrophysics Data System (ADS)

    Boyd, C. Glenn; Brahm, David E.

    1991-03-01

    Heavy-quark predictions for hadronic weak-decay transition amplitudes have O( {1}/{m}) corrections, but we show these always vanish at threshold. This follows from the nonrenormalization of the threshold effective currents at O( {1}/{m}) , and an application of the Ademollo-Gatto theorem. The result, which we call Luke's theorem, holds for initial and final particles consisting of a heavy quark or scalar and light degrees of freedom in an arbitrary spin state.

  13. 30 CFR 250.1741 - If I drag a trawl across a site, what requirements must I meet?

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 30 Mineral Resources 2 2012-07-01 2012-07-01 false If I drag a trawl across a site, what... I drag a trawl across a site, what requirements must I meet? If you drag a trawl across the site in accordance with § 250.1740, you must meet all of the requirements of this section. (a) You must drag...

  14. 30 CFR 250.1741 - If I drag a trawl across a site, what requirements must I meet?

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 30 Mineral Resources 2 2013-07-01 2013-07-01 false If I drag a trawl across a site, what... I drag a trawl across a site, what requirements must I meet? If you drag a trawl across the site in accordance with § 250.1740, you must meet all of the requirements of this section. (a) You must drag...

  15. 30 CFR 250.1741 - If I drag a trawl across a site, what requirements must I meet?

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 30 Mineral Resources 2 2010-07-01 2010-07-01 false If I drag a trawl across a site, what... Decommissioning Activities Site Clearance for Wells, Platforms, and Other Facilities § 250.1741 If I drag a trawl across a site, what requirements must I meet? If you drag a trawl across the site in accordance...

  16. 50 CFR Table 51 to Part 679 - Modified Gear Trawl Zone

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Modified Gear Trawl Zone 51 Table 51 to... ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE OFF ALASKA Pt. 679, Table 51 Table 51 to Part 679—Modified Gear Trawl Zone Longitude Latitude 171 45.00 W 61 00.00 N 169...

  17. 50 CFR Table 51 to Part 679 - Modified Gear Trawl Zone

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Modified Gear Trawl Zone 51 Table 51 to... ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE OFF ALASKA Pt. 679, Table 51 Table 51 to Part 679—Modified Gear Trawl Zone Longitude Latitude 171 45.00 W 61 00.00 N 169...

  18. 50 CFR Table 51 to Part 679 - Modified Gear Trawl Zone

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Modified Gear Trawl Zone 51 Table 51 to... ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE OFF ALASKA Pt. 679, Table 51 Table 51 to Part 679—Modified Gear Trawl Zone Longitude Latitude 171 45.00 W 61 00.00 N 169...

  19. 50 CFR Table 51 to Part 679 - Modified Gear Trawl Zone

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Modified Gear Trawl Zone 51 Table 51 to... ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE OFF ALASKA Pt. 679, Table 51 Table 51 to Part 679—Modified Gear Trawl Zone Longitude Latitude 171 45.00 W 61 00.00 N 169...

  20. 50 CFR 660.337 - Trawl rationalization program - data collection requirements.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... COAST STATES West Coast Groundfish Fisheries § 660.337 Trawl rationalization program - data collection... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Trawl rationalization program - data collection requirements. 660.337 Section 660.337 Wildlife and Fisheries FISHERY CONSERVATION AND...

  1. 75 FR 54292 - Fisheries of the Northeastern United States; Discard Provision for Herring Midwater Trawl Vessels...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-07

    ... On September 4, 2009, NMFS published a proposed rule (74 FR 45798) to implement changes to access... trawl fishery. A final rule was published on November 2, 2009 (74 FR 56562) that implemented regulations... United States; Discard Provision for Herring Midwater Trawl Vessels Fishing in Groundfish Closed Area...

  2. The 'W' prawn-trawl with emphasised drag-force transfer to its centre line to reduce overall system drag.

    PubMed

    Balash, Cheslav; Sterling, David; Binns, Jonathan; Thomas, Giles; Bose, Neil

    2015-01-01

    For prawn trawling systems, drag reduction is a high priority as the trawling process is energy intensive. Large benefits have occurred through the use of multiple-net rigs and thin twine in the netting. An additional positive effect of these successful twine-area reduction strategies is the reduced amount of otter board area required to spread the trawl systems, which leads to further drag reduction. The present work investigated the potential of redirecting the drag-strain within a prawn trawl away from the wings and the otter boards to the centre line of the trawl, where top and bottom tongues have been installed, with an aim to minimise the loading/size of the otter boards required to spread the trawl. In the system containing the new 'W' trawl, the drag redirected to the centre-line tongues is transferred forward through a connected sled and towing wires to the trawler. To establish the extent of drag redirection to the centre-line tongues and the relative drag benefits of the new trawl system, conventional and 'W' trawls of 3.65 m headline length were tested firstly over a range of spread ratios in the flume tank, and subsequently at optimum spread ratio in the field. The developed 'W' trawl effectively directed 64% of netting-drag off the wings and onto the centre tongues, which resulted in drag savings in the field of ∼20% for the associated 'W' trawl/otter-board/sled system compared to the traditional trawl/otter-board arrangement in a single trawl or twin rig configuration. Furthermore, based on previously published data, the new trawl when used in a twin rig system is expected to provide approximately 12% drag reduction compared to quad rig. The twin 'W' trawl system also has benefits over quad rig in that a reduced number of cod-end/By-catch Reduction Device units need to be installed and attended each tow. PMID:25751251

  3. Towards a trawling-affected sediment budget on the Galician shelf (NW Spain)

    NASA Astrophysics Data System (ADS)

    Oberle, F. J.; Hanebuth, T. J.

    2013-05-01

    This case study uses vessel monitoring data in conjunction with multiple sedimentological and geochemical proxies on sediment cores to quantify the effect of bottom trawling on a source-to-sink budget analysis of a late Holocene mid-shelf mudbelt. The long-term effect of bottom trawling on seafloor sediments is largely unknown and the existing studies are contradictive. This is particularly surprising as mud depocenters on shelves are of great economic and environmental interest because they represent areas where fishing and other ground disturbing activities have high impacts, and the associated ecosystems hold one of the highest biodiversity. The Galician Mudbelt, exemplary for many other mudbelts worldwide, is located on the open and narrow continental shelf of NW Iberia and is widely affected by chronic (continuous and intensive) commercial bottom trawling. In this study we present the results from 2.800 km of seismo-acoustic data used to calculate a high-resolution isopach map that represents the Late Holocene (< 5.3 cal ka BP) mud accumulation pattern on the shelf. In conjunction with sediment core data, we have calculated a sedimentary budget of this mudbelt and for the shelf sediment export for the Late Holocene. Quantifying trawling induced sediment disturbance to a mudbelt is difficult. We here present vessel monitoring data from one year 2011-2012 to quantify bottom trawling activity. Bottom trawling activity can be identified by filtering the vessel monitoring data by vessel type, vessel speed and geometry of the trawl path. The results from this show geographically detailed bottom trawling activities with varying local trawling intensities depending both on legal restrictions and bedrock geomorphology. In conjunction with this data, heavy metal sediment analysis (e. g. As, Zn, Cr, Pb) and isotope dating (e. g. Cs-137, Pb-210) will be evaluated in a next step for the suitability to calculate the depth of trawling induced sediment disturbance. From this

  4. Acoustic mirror effect increases prey detection distance in trawling bats

    NASA Astrophysics Data System (ADS)

    Siemers, Björn M.; Baur, Eric; Schnitzler, Hans-Ulrich

    2005-06-01

    Many different and phylogenetically distant species of bats forage for insects above water bodies and take insects from and close to the surface; the so-called ‘trawling behaviour’. Detection of surface-based prey by echolocation is facilitated by acoustically smooth backgrounds such as water surfaces that reflect sound impinging at an acute angle away from the bat and thereby render a prey object acoustically conspicuous. Previous measurements had shown that the echo amplitude of a target on a smooth surface is higher than that of the same target in mid-air, due to an acoustic mirror effect. In behavioural experiments with three pond bats (Myotis dasycneme), we tested the hypothesis that the maximum distances at which bats can detect prey are larger for prey on smooth surfaces than for the same prey in an airborne situation. We determined the moment of prey detection from a change in echolocation behaviour and measured the detection distance in 3D space from IR-video recordings using stereo-photogrammetry. The bats showed the predicted increase in detection distance for prey on smooth surfaces. The acoustic mirror effect therefore increases search efficiency and contributes to the acoustic advantages encountered by echolocating bats when foraging at low heights above smooth water surfaces. These acoustic advantages may have favoured the repeated evolution of trawling behaviour.

  5. A dataset from bottom trawl survey around Taiwan

    PubMed Central

    Shao, Kwang-Tsao; Lin, Jack; Wu, Chung-Han; Yeh, Hsin-Ming; Cheng, Tun-Yuan

    2012-01-01

    Abstract Bottom trawl fishery is one of the most important coastal fisheries in Taiwan both in production and economic values. However, its annual production started to decline due to overfishing since the 1980s. Its bycatch problem also damages the fishery resource seriously. Thus, the government banned the bottom fishery within 3 nautical miles along the shoreline in 1989. To evaluate the effectiveness of this policy, a four year survey was conducted from 2000–2003, in the waters around Taiwan and Penghu (Pescadore) Islands, one region each year respectively. All fish specimens collected from trawling were brought back to lab for identification, individual number count and body weight measurement. These raw data have been integrated and established in Taiwan Fish Database (http://fishdb.sinica.edu.tw). They have also been published through TaiBIF (http://taibif.tw), FishBase and GBIF (website see below). This dataset contains 631 fish species and 3,529 records, making it the most complete demersal fish fauna and their temporal and spatial distributional data on the soft marine habitat in Taiwan. PMID:22707908

  6. What a drag: Quantifying the global impact of chronic bottom trawling on continental shelf sediment

    NASA Astrophysics Data System (ADS)

    Oberle, Ferdinand K. J.; Storlazzi, Curt D.; Hanebuth, Till J. J.

    2016-07-01

    Continental shelves worldwide are subject to intense bottom trawling that causes sediment to be resuspended. The widely used traditional concepts of modern sedimentary transport systems on the shelf rely only on estimates for naturally driven sediment resuspension such as through storm waves, bottom currents, and gravity-driven flows but they overlook a critical anthropogenic factor. The strong influence of bottom trawling on a source-to-sink sediment budget is explored on the NW Iberian shelf. Use of Automated Information System vessel tracking data provides for a high-resolution vessel track reconstruction and the accurate calculation of the spatial distribution of bottom trawling intensity and associated resuspended sediment load. The mean bottom trawling-induced resuspended sediment mass for the NW Iberian shelf is 13.50 Mt yr- 1, which leads to a six-fold increase in off-shelf sediment transport when compared to natural resuspension mechanisms. The source-to-sink budget analysis provides evidence that bottom trawling causes a rapid erosion of the fine sediment on human time scales. Combining global soft sediment distribution data of the shelves with worldwide bottom trawling intensity estimates we show that the bottom trawling-induced resuspended sediment mass amounts to approximately the same mass of all sediment entering the shelves through rivers. Spatial delineations between natural and anthropogenic sediment resuspension areas are presented to aid in marine management questions.

  7. What a drag: Quantifying the global impact of chronic bottom trawling on continental shelf sediment

    USGS Publications Warehouse

    Oberle, Ferdinand K.J.; Storlazzi, Curt; Hanebuth, Till J.J.

    2016-01-01

    Continental shelves worldwide are subject to intense bottom trawling that causes sediment to be resuspended. The widely used traditional concepts of modern sedimentary transport systems on the shelf rely only on estimates for naturally driven sediment resuspension such as through storm waves, bottom currents, and gravity-driven flows but they overlook a critical anthropogenic factor. The strong influence of bottom trawling on a source-to-sink sediment budget is explored on the NW Iberian shelf. Use of Automated Information System vessel tracking data provides for a high-resolution vessel track reconstruction and the accurate calculation of the spatial distribution of bottom trawling intensity and associated resuspended sediment load. The mean bottom trawling-induced resuspended sediment mass for the NW Iberian shelf is 13.50 Mt yr− 1, which leads to a six-fold increase in off-shelf sediment transport when compared to natural resuspension mechanisms. The source-to-sink budget analysis provides evidence that bottom trawling causes a rapid erosion of the fine sediment on human time scales. Combining global soft sediment distribution data of the shelves with worldwide bottom trawling intensity estimates we show that the bottom trawling-induced resuspended sediment mass amounts to approximately the same mass of all sediment entering the shelves through rivers. Spatial delineations between natural and anthropogenic sediment resuspension areas are presented to aid in marine management questions.

  8. Behaviour of fish by-catch in the mouth of a crustacean trawl.

    PubMed

    Queirolo, D; Gaete, E; Montenegro, I; Soriguer, M C; Erzini, K

    2012-06-01

    The behaviour of fish by-catch was recorded and characterized by in situ observations in the mouth of a crustacean trawl using an underwater camera system with artificial light, at depths between 106 and 461 m, along the central coast of Chile. The groups or species studied were rattails (family Macrouridae), Chilean hake Merluccius gayi gayi, sharks (orders Carcharhiniformes and Squaliformes), skates (family Rajidae), flatfishes (genus Hippoglossina) and small benthopelagic and demersal fishes (orders Osmeriformes, Stomiiformes, Gadiformes, Ophidiiformes and Perciformes). The fish behaviour was categorized in terms of (1) position in the water column, (2) initial orientation with respect to the trawl, (3) locomotion and (4) swimming speed with respect to the trawl. Rattails, sharks, skates and flatfishes were passive in response to the trawl and showed similar behavioural patterns, with most fishes observed sitting or touching the bottom with no swimming or other activity. Merluccius gayi gayi was the most active species, displaying a wide combination of behavioural responses when the trawl approached. This species showed several behavioural patterns, mainly characterized by swimming forward at variable speed. A fraction of small bentho-pelagic and demersal fishes also showed an active behaviour but always at lower speed than the trawl. The species-specific differences in behaviour in the mouth of the trawl suggest that improvements at the level of the footrope can be made to reduce by-catch, especially of passive species. PMID:22650431

  9. Benthic microbial abundance and activities in an intensively trawled ecosystem (Thermaikos Gulf, Aegean Sea)

    NASA Astrophysics Data System (ADS)

    Polymenakou, Paraskevi N.; Pusceddu, Antonio; Tselepides, Anastasios; Polychronaki, Thalia; Giannakourou, Antonia; Fiordelmondo, Carla; Hatziyanni, Eleni; Danovaro, Roberto

    2005-12-01

    Abundance of benthic bacteria, heterotrophic nanoflagellates and ciliates, extracellular enzymatic activities, bacterial C production, C mineralisation and sediment community oxygen consumption rates were measured in the Thermaikos Gulf (Northeastern Mediterranean), before (September 2001), and during intense trawling activities (October 2001 and February 2002). The biochemical composition of sedimentary organic matter has revealed that bottom trawling had an effect on the trophic state of Thermaikos Gulf. Changes on the benthic microbial food web were also recorded, during the three sampling seasons. Even though trawling-induced sediment resuspension did not alter significantly the abundance of the microbial components, with the exception of the most impacted station, it determined changes regarding their relative importance. Thus, the ratios of bacterium to nanoflagellates and ciliate to nanoflagellates abundance increased in the trawled stations, causing a sudden increase in bacterial C production, in comparison to the non-trawled station. Four months later, the effects of trawling on the microbial food web were less evident, masked possibly by the drastic decrease in the water temperature. The results of the present work suggest that bottom trawling induces alteration of the sedimentological variables and can be considered as a factor affecting the function of the microbial food web in marine coastal ecosystems. These alterations cause faster mobilisation of organic C buried in the sediment and increase nutrient concentrations and availability in the system, thus inducing an effect that could lead to coastal eutrophication.

  10. Efficacy of a benthic trawl for sampling small-bodied fishes in large river systems

    USGS Publications Warehouse

    Herzog, D.P.; Barko, V.A.; Scheibe, J.S.; Hrabik, R.A.; Ostendorf, D.E.

    2005-01-01

    We conducted a study from 1998 to 2001 to determine the efficacy of a benthic trawl designed to increase species detection and reduce the incidence of zero catches of small-bodied fishes. We modified a standard two-seam slingshot balloon trawl by covering the entire trawl with a small-mesh cover. After completing 281 hauls with the modified (Missouri) trawl, we discovered that most fish passed through the body of the standard trawl and were captured in the cover. Logistic regression indicated no noticeable effect of the cover on the catch entering the standard portion of the modified trawl. However, some fishes (e.g., larval sturgeons Scaphirhynchus spp. and pallid sturgeon S. albus) were exclusively captured in the small-mesh cover, while the catch of small-bodied adult fish (e.g., chubs Macrhybopsis spp.) was significantly improved by use of the small-mesh cover design. The Missouri trawl significantly increased the number and species of small-bodied fishes captured over previously used designs and is a useful method for sampling the benthic fish community in moderate- to large-size river systems.

  11. Configuring the mesh size, side taper and wing depth of penaeid trawls to reduce environmental impacts.

    PubMed

    Broadhurst, Matt K; Sterling, David J; Millar, Russell B

    2014-01-01

    The effects of reducing mesh size while concomitantly varying the side taper and wing depth of a generic penaeid-trawl body were investigated to improve engineering performance and minimize bycatch. Five trawl bodies (with the same codends) were tested across various environmental (e.g. depth and current) and biological (e.g. species and sizes) conditions. The first trawl body comprised 41-mm mesh and represented conventional designs (termed the '41 long deep-wing'), while the remaining trawl bodies were made from 32-mm mesh and differed only in their side tapers, and therefore length (i.e. 1N3B or 'long' and ∼28o to the tow direction vs 1N5B or 'short' and ∼35o) and wing depths ('deep'-97 T vs 'shallow'-60 T). There were incremental drag reductions (and therefore fuel savings--by up to 18 and 12% per h and ha trawled) associated with reducing twine area via either modification, and subsequently minimizing otter-board area in attempts to standardize spread. Side taper and wing depth had interactive and varied effects on species selectivity, but compared to the conventional 41 long deep-wing trawl, the 32 short shallow-wing trawl (i.e. the least twine area) reduced the total bycatch by 57% (attributed to more fish swimming forward and escaping). In most cases, all small-meshed trawls also caught more smaller school prawns Metapenaeus macleayi but to decrease this effect it should be possible to increase mesh size slightly, while still maintaining the above engineering benefits and species selectivity. The results support precisely optimizing mesh size as a precursor to any other anterior penaeid-trawl modifications designed to improve environmental performance. PMID:24911786

  12. Configuring the Mesh Size, Side Taper and Wing Depth of Penaeid Trawls to Reduce Environmental Impacts

    PubMed Central

    Broadhurst, Matt K.; Sterling, David J.; Millar, Russell B.

    2014-01-01

    The effects of reducing mesh size while concomitantly varying the side taper and wing depth of a generic penaeid-trawl body were investigated to improve engineering performance and minimize bycatch. Five trawl bodies (with the same codends) were tested across various environmental (e.g. depth and current) and biological (e.g. species and sizes) conditions. The first trawl body comprised 41-mm mesh and represented conventional designs (termed the ‘41 long deep-wing'), while the remaining trawl bodies were made from 32-mm mesh and differed only in their side tapers, and therefore length (i.e. 1N3B or ‘long’ and ∼28o to the tow direction vs 1N5B or ‘short’ and ∼35o) and wing depths (‘deep’–97 T vs ‘shallow’–60 T). There were incremental drag reductions (and therefore fuel savings – by up to 18 and 12% per h and ha trawled) associated with reducing twine area via either modification, and subsequently minimizing otter-board area in attempts to standardize spread. Side taper and wing depth had interactive and varied effects on species selectivity, but compared to the conventional 41 long deep-wing trawl, the 32 short shallow-wing trawl (i.e. the least twine area) reduced the total bycatch by 57% (attributed to more fish swimming forward and escaping). In most cases, all small-meshed trawls also caught more smaller school prawns Metapenaeus macleayi but to decrease this effect it should be possible to increase mesh size slightly, while still maintaining the above engineering benefits and species selectivity. The results support precisely optimizing mesh size as a precursor to any other anterior penaeid-trawl modifications designed to improve environmental performance. PMID:24911786

  13. Marine litter in bottom trawls off the Portuguese coast.

    PubMed

    Neves, Diogo; Sobral, Paula; Pereira, Tânia

    2015-10-15

    Benthic marine litter along the Portuguese coast, was recorded in 14 trips on stern trawlers covering a distance of 2117 km and an area of 56.2 km(2), average depth range 90-349 m. 2034 items of marine litter were registered, 76% were plastics and 38.6% were originated from fishing related activities. Plastic was present in all the trawls and had the highest average density of all litter categories, 50 items km(-2). The highest density of marine litter (178.9 ± 64.0 items km(-2)) was found in the proximity of the Tagus river mouth, probably related to the high population density in the Lisbon metropolitan area. This study highlights the need to raise fishermen awareness for the adoption of good environmental practices that will contribute to the reduction of marine litter. PMID:26231069

  14. Relationship between trawl selectivity and fish body size in a simulated population

    NASA Astrophysics Data System (ADS)

    Sun, Peng; Liang, Zhenlin; Huang, Liuyi; Tang, Yanli; He, Xin

    2013-03-01

    Trawl is a main fishing gear in Chinese fishery, capturing large fish and letting small ones at large. However, long-term use of trawl would result in changes of phenotypic traits of the fish stocks, such as smaller size-at-age and earlier age-at-maturation. In this study, we simulated a fish population with size characteristics of trawl fishing and the population produces one generation of offspring and lives for one year, used trawl to exploit the simulated fish population, and captured individuals by body size. We evaluated the impact of the changes on selectivity parameters, such as selective range and the length at 50% retention. Under fishing pressure, we specified the selectivity parameters, and determined that smaller selection rates and greater length at 50% retention were associated with an increased tendency towards miniaturization.

  15. Towards a Trawling-Affected Sediment Budget on the NW Iberian Shelf

    NASA Astrophysics Data System (ADS)

    Oberle, F. J.; Swarzenski, P. W.; Reddy, C. M.; Hanebuth, T.

    2013-12-01

    This case study uses vessel monitoring data in conjunction with multiple sedimentological and geochemical proxies from sediment cores to quantify the effect of bottom trawling on a source-to-sink budget analysis of a late Holocene mid-shelf mudbelt. The long-term effect of bottom trawling on seafloor sediments is largely unknown and the existing studies are contradictive. This is particularly surprising as mud depocenters on shelves are of great economic and environmental interest because they represent areas where fishing and other ground disturbing activities have high impacts, and the associated ecosystems hold one of the highest biodiversity. The NW Iberian mudbelt, exemplary for many other mudbelts worldwide, is located on the open and narrow continental shelf of NW Iberia and is widely affected by chronic (continuous and intensive) commercial bottom trawling. In this study we present the results from 2.800 km of seismo-acoustic data used to calculate a high-resolution isopach map that represents the Late Holocene (< 5.3 cal ka BP) mud accumulation pattern on the shelf. In conjunction with sediment core data, we have calculated a sedimentary budget of this mudbelt and for the shelf sediment export for the Late Holocene. Quantifying trawling induced sediment disturbance to a mudbelt is difficult. We here present vessel monitoring data from one year 2011-2012 to quantify bottom trawling activity. Bottom trawling activity can be identified by filtering the vessel monitoring data by vessel type, vessel speed and geometry of the trawl path. The results from this show geographically detailed bottom trawling activities with varying local trawling intensities depending both on legal restrictions and bedrock geomorphology. In conjunction with this data, heavy metal sediment analysis (e. g. As, Zn, Cr, Pb) and isotope dating (e. g. Cs-137, Pb-210) will be evaluated in a next step for the suitability to calculate the depth of trawling induced sediment disturbance. From

  16. Vulnerability of individual fish to capture by trawling is influenced by capacity for anaerobic metabolism

    PubMed Central

    Killen, Shaun S.; Nati, Julie J. H.; Suski, Cory D.

    2015-01-01

    The harvest of animals by humans may constitute one of the strongest evolutionary forces affecting wild populations. Vulnerability to harvest varies among individuals within species according to behavioural phenotypes, but we lack fundamental information regarding the physiological mechanisms underlying harvest-induced selection. It is unknown, for example, what physiological traits make some individual fish more susceptible to capture by commercial fisheries. Active fishing methods such as trawling pursue fish during harvest attempts, causing fish to use both aerobic steady-state swimming and anaerobic burst-type swimming to evade capture. Using simulated trawling procedures with schools of wild minnows Phoxinus phoxinus, we investigate two key questions to the study of fisheries-induced evolution that have been impossible to address using large-scale trawls: (i) are some individuals within a fish shoal consistently more susceptible to capture by trawling than others?; and (ii) if so, is this related to individual differences in swimming performance and metabolism? Results provide the first evidence of repeatable variation in susceptibility to trawling that is strongly related to anaerobic capacity and swimming ability. Maximum aerobic swim speed was also negatively correlated with vulnerability to trawling. Standard metabolic rate was highest among fish that were least vulnerable to trawling, but this relationship probably arose through correlations with anaerobic capacity. These results indicate that vulnerability to trawling is linked to anaerobic swimming performance and metabolic demand, drawing parallels with factors influencing susceptibility to natural predators. Selection on these traits by fisheries could induce shifts in the fundamental physiological makeup and function of descendent populations. PMID:26246542

  17. A transactional and collaborative approach to reducing effects of bottom trawling.

    PubMed

    Gleason, Mary; Feller, Erika M; Merrifield, Matt; Copps, Stephen; Fujita, Rod; Bell, Michael; Rienecke, Steve; Cook, Chuck

    2013-06-01

    Private-sector financial and legal transactions have long been used to protect terrestrial habitats and working landscapes, but less commonly to address critical threats in marine environments. Transferrable and marketable fishing privileges, including permits and quotas, make it possible to use private-sector transactions as conservation strategies to address some fishery management issues. Abating the effects of bottom trawling on the seafloor and bycatch and discard associated with the practice has proven challenging. On the Central Coast of California, The Nature Conservancy (TNC), Environmental Defense Fund, local fishers and local, state, and federal authorities worked collaboratively to protect large areas of the seafloor from bottom trawling for groundfish while addressing economic impacts of trawl closures. Contingent on the adoption of trawl-closure areas by a federal regulatory agency, TNC used private funds to purchase federal groundfish trawl permits and vessels from willing sellers. Trawl-closure areas were designed collaboratively by combining regional biological diversity and fisheries data with local fishers' knowledge. The private transactional strategy was designed to remedy some deficiencies in previous federal buyouts, to mitigate economic impacts from trawl closures, and to carefully align with a public regulatory process to protect "essential fish habitat" under the Magnuson-Stevens Fishery Conservation and Management Act. This collaborative effort protected 1.5 million ha (3.8 million acres) of seafloor, reduced trawl effort in the area by 50%, and set a precedent for collaborative partnerships between conservation and fishing interests. This is the first time a large conservation organization has taken an ownership position in a fishery and demonstrates how nongovernmental organizations can invest in fisheries to improve environmental and economic performance. PMID:23530985

  18. Vulnerability of individual fish to capture by trawling is influenced by capacity for anaerobic metabolism.

    PubMed

    Killen, Shaun S; Nati, Julie J H; Suski, Cory D

    2015-08-22

    The harvest of animals by humans may constitute one of the strongest evolutionary forces affecting wild populations. Vulnerability to harvest varies among individuals within species according to behavioural phenotypes, but we lack fundamental information regarding the physiological mechanisms underlying harvest-induced selection. It is unknown, for example, what physiological traits make some individual fish more susceptible to capture by commercial fisheries. Active fishing methods such as trawling pursue fish during harvest attempts, causing fish to use both aerobic steady-state swimming and anaerobic burst-type swimming to evade capture. Using simulated trawling procedures with schools of wild minnows Phoxinus phoxinus, we investigate two key questions to the study of fisheries-induced evolution that have been impossible to address using large-scale trawls: (i) are some individuals within a fish shoal consistently more susceptible to capture by trawling than others?; and (ii) if so, is this related to individual differences in swimming performance and metabolism? Results provide the first evidence of repeatable variation in susceptibility to trawling that is strongly related to anaerobic capacity and swimming ability. Maximum aerobic swim speed was also negatively correlated with vulnerability to trawling. Standard metabolic rate was highest among fish that were least vulnerable to trawling, but this relationship probably arose through correlations with anaerobic capacity. These results indicate that vulnerability to trawling is linked to anaerobic swimming performance and metabolic demand, drawing parallels with factors influencing susceptibility to natural predators. Selection on these traits by fisheries could induce shifts in the fundamental physiological makeup and function of descendent populations. PMID:26246542

  19. Chronic and intensive bottom trawling impairs deep-sea biodiversity and ecosystem functioning

    PubMed Central

    Pusceddu, Antonio; Bianchelli, Silvia; Martín, Jacobo; Puig, Pere; Palanques, Albert; Masqué, Pere; Danovaro, Roberto

    2014-01-01

    Bottom trawling has many impacts on marine ecosystems, including seafood stock impoverishment, benthos mortality, and sediment resuspension. Historical records of this fishing practice date back to the mid-1300s. Trawling became a widespread practice in the late 19th century, and it is now progressively expanding to greater depths, with the concerns about its sustainability that emerged during the first half of the 20th century now increasing. We show here that compared with untrawled areas, chronically trawled sediments along the continental slope of the north-western Mediterranean Sea are characterized by significant decreases in organic matter content (up to 52%), slower organic carbon turnover (ca. 37%), and reduced meiofauna abundance (80%), biodiversity (50%), and nematode species richness (25%). We estimate that the organic carbon removed daily by trawling in the region under scrutiny represents as much as 60–100% of the input flux. We anticipate that such an impact is causing the degradation of deep-sea sedimentary habitats and an infaunal depauperation. With deep-sea trawling currently conducted along most continental margins, we conclude that trawling represents a major threat to the deep seafloor ecosystem at the global scale. PMID:24843122

  20. Integrating the provision of ecosystem services and trawl fisheries for the management of the marine environment.

    PubMed

    Muntadas, Alba; de Juan, Silvia; Demestre, Montserrat

    2015-02-15

    The species interaction and their biological traits (BT) determine the function of benthic communities and, hence, the delivery of ecosystem services. Therefore, disturbance of benthic communities by trawling may compromise ecosystem service delivery, including fisheries' catches. In this work, we explore 1) the impact of trawling activities on benthic functional components (after the BTA approach) and 2) how trawling impact may affect the ecosystem services delivered by benthic communities. To this aim, we assessed the provision of ecosystem services by adopting the concept of Ecosystem Service Providers (ESP), i.e. ecological units that perform ecosystem functions that will ultimately deliver ecosystem services. We studied thirteen sites subjected to different levels of fishing effort in the Mediterranean. From a range of environmental variables included in the study, we found ESPs to be mainly affected by fishing effort and grain size. Our results suggested that habitat type has significant effects on the distribution of ESPs and this natural variability influences ESP response to trawling at a specific site. In order to summarize the complex relationships between human uses, ecosystem components and the demand for ecosystem services in trawling grounds, we adapted a DPSIR (Drivers-Pressures-State Change-Impact-Response) framework to the study area, emphasizing the role of society as Drivers of change and actors demanding management Responses. This integrative framework aims to inform managers about the interactions between all the elements involved in the management of trawling grounds, highlighting the need for an integrated approach in order to ensure ecosystem service provision. PMID:25433378

  1. Chronic and intensive bottom trawling impairs deep-sea biodiversity and ecosystem functioning.

    PubMed

    Pusceddu, Antonio; Bianchelli, Silvia; Martín, Jacobo; Puig, Pere; Palanques, Albert; Masqué, Pere; Danovaro, Roberto

    2014-06-17

    Bottom trawling has many impacts on marine ecosystems, including seafood stock impoverishment, benthos mortality, and sediment resuspension. Historical records of this fishing practice date back to the mid-1300s. Trawling became a widespread practice in the late 19th century, and it is now progressively expanding to greater depths, with the concerns about its sustainability that emerged during the first half of the 20th century now increasing. We show here that compared with untrawled areas, chronically trawled sediments along the continental slope of the north-western Mediterranean Sea are characterized by significant decreases in organic matter content (up to 52%), slower organic carbon turnover (ca. 37%), and reduced meiofauna abundance (80%), biodiversity (50%), and nematode species richness (25%). We estimate that the organic carbon removed daily by trawling in the region under scrutiny represents as much as 60-100% of the input flux. We anticipate that such an impact is causing the degradation of deep-sea sedimentary habitats and an infaunal depauperation. With deep-sea trawling currently conducted along most continental margins, we conclude that trawling represents a major threat to the deep seafloor ecosystem at the global scale. PMID:24843122

  2. Impacts of crowding, trawl duration and air exposure on the physiology of stingarees (family: Urolophidae)

    PubMed Central

    Heard, Matthew; Van Rijn, Jason A.; Reina, Richard D.; Huveneers, Charlie

    2014-01-01

    Research on physiological stress and post-capture mortality of threatened species caught as bycatch is critical for the management of fisheries. The present study used laboratory simulations to examine the physiological stress response of sparsely spotted stingarees (Urolophus paucimaculatus) subjected to one of four different trawl treatments, including two different trawl durations as well as ancillary stressors of either air exposure or crowding. Physiological indicators (plasma lactate, urea, potassium and glucose) and changes in white blood cell counts were measured from blood samples taken throughout a 48 h recovery period. Mortality was low throughout this study (15% overall) and occurred only after >48 h following air exposure, crowding and 3 h trawl simulations. Plasma lactate, glucose and urea concentrations were identified as potential indicators of physiological stress, while plasma potassium and white blood cell counts were too variable to identify changes that would be expected to have biological consequences for stingarees. The characterization of the temporal profiles of physiological indicators facilitates a more accurate assessment of secondary stressors by identifying the best timing to sample stingaree blood when investigating post-capture stress physiology. High levels of lactate, increasing glucose and depressed urea were all recorded in response to air exposure following trawling, indicating that this is the primary source of stress in stingarees caught in trawling operations. These findings highlight the importance of improving bycatch sorting procedures to reduce the time out of the water for trawl-caught stingarees. PMID:27293661

  3. Effects of experimental otter trawling on benthic assemblages on Western Bank, northwest Atlantic Ocean

    NASA Astrophysics Data System (ADS)

    Kenchington, Ellen L. R.; Gilkinson, Kent D.; MacIsaac, Kevin G.; Bourbonnais-Boyce, Cynthia; Kenchington, Trevor J.; Smith, Stephen J.; Gordon, Donald C., Jr.

    2006-10-01

    The effects of otter trawling on a hard-bottom ecosystem on Western Bank on Canada's Scotian Shelf were examined experimentally from 1997 to 1999 with an asymmetrical BACI design. The site was located within an area that had been closed to fishing since 1987 to protect juvenile haddock. An experimental line was trawled 12-14 times on three separate occasions over a 20 month period. The benthic macrofauna and megafauna were sampled before and after trawling on both impact and control lines with both a grab and a photographic system. The 100 grab samples collected contained 341 taxa, primarily polychaetes, amphipods and molluscs, the majority (60%) of which were epifaunal. Biomass was dominated by the horse-mussel Modiolus modiolus, a long-lived bivalve, while the tube-building amphipod Ericthonius fasciatus was the most abundant species. Through the study period the benthos on the control lines showed little qualitative or quantitative change in individual taxa or community metrics. However, the abundance of 24 individual taxa (polychaetes, amphipods, echinoderms and molluscs) changed significantly, with the majority of these increasing. This resulted in a significantly different relative abundance of taxa between years as detected through ANOSIM. A significant change in relative biomass amongst the taxa was also observed. Trawling had few detectable immediate effects on the abundance or biomass of individual taxa and none on community composition. A few taxa, primarily a mixture of polychaetes and amphipods, decreased significantly after trawling and data from fish stomachs collected during the experiment (Kenchington, E.L., Gordon Jr., D.C., Bourbonnais-Boyce, C., MacIsaac, K.G., Gilkinson, K.D., McKeown, D.L., Vass, W.P., 2005. Effects of experimental otter trawling on the feeding of demersal fish on Western Bank, Nova Scotia. Amer. Fish. Soc. Symp. 41, 391-409) showed that some of these were scavenged by demersal fish. Fifteen taxa showed significant decreases

  4. High Density Experiments in the HL-1M Tokamak

    NASA Astrophysics Data System (ADS)

    Yan, Long-wen; Yao, Liang-hua; Zhou, Yan; Liu, Yong; Wang, En-yao; HL-1M Team

    2000-10-01

    The plasma performance of high density has been investigated in the HL-1M Tokamak. Different density limits are given for three fueling methods i.e. gas puffing, pellet injection and molecular beam injection (MBI). The maximum Murakami constant is CM = 3.4 × 1019 m-2T-1 for Ohmic discharge. A maximum line-averaged density of 8.2 × 1019 m-3 has been achieved for Ohmic discharge at qa = 4.4. A 1.4 times of the Greenwald limit is obtained at Ip = 120 kA. The rising rates and peak factors of density are discussed. The plasma confinement of high density is analyzed, including the behavior of density limit disruption.

  5. Patterns of Dolphin Bycatch in a North-Western Australian Trawl Fishery

    PubMed Central

    Allen, Simon J.; Tyne, Julian A.; Kobryn, Halina T.; Bejder, Lars; Pollock, Kenneth H.; Loneragan, Neil R.

    2014-01-01

    The bycatch of small cetaceans in commercial fisheries is a global wildlife management problem. We used data from skippers' logbooks and independent observers to assess common bottlenose dolphin (Tursiops truncatus) bycatch patterns between 2003 and 2009 in the Pilbara Trawl Fishery, Western Australia. Both datasets indicated that dolphins were caught in all fishery areas, across all depths and throughout the year. Over the entire datasets, observer reported bycatch rates (n = 52 dolphins in 4,124 trawls, or 12.6 dolphins/1,000 trawls) were ca. double those reported by skippers (n = 180 dolphins in 27,904 trawls, or 6.5 dolphins/1,000 trawls). Generalised Linear Models based on observer data, which better explained the variation in dolphin bycatch, indicated that the most significant predictors of dolphin catch were: (1) vessel - one trawl vessel caught significantly more dolphins than three others assessed; (2) time of day – the lowest dolphin bycatch rates were between 00:00 and 05:59; and (3) whether nets included bycatch reduction devices (BRDs) - the rate was reduced by ca. 45%, from 18.8 to 10.3 dolphins/1,000 trawls, after their introduction. These results indicated that differences among vessels (or skippers' trawling techniques) and dolphin behavior (a diurnal pattern) influenced the rates of dolphin capture; and that spatial or seasonal adjustments to trawling effort would be unlikely to significantly reduce dolphin bycatch. Recent skipper's logbook data show that dolphin bycatch rates have not declined since those reported in 2006, when BRDs were introduced across the fishery. Modified BRDs, with top-opening escape hatches from which dolphins might escape to the surface, may be a more effective means of further reducing dolphin bycatch. The vulnerability of this dolphin population to trawling-related mortality cannot be assessed in the absence of an ongoing observer program and without information on trawler-associated dolphin community size

  6. Abundance analyses of mega-epibenthic species on the Dogger Bank (North Sea): Diurnal rhythms and short-term effects caused by repeated trawling, observed at a permanent station

    NASA Astrophysics Data System (ADS)

    Sonnewald, Moritz; Türkay, Michael

    2012-10-01

    Within our long term monitoring programme at the Dogger Bank (North Sea), a permanent station at the north-eastern tail end of the Dogger Bank was sampled yearly with a 2 m beam trawl since the year 1994. The sampling procedure was repeated every 3 h within a timeframe of 48 h. All species above a size of 1 cm were recorded quantitatively. The analysis of the dataset, consisting of thirteen sampling years, revealed rhythmic abundance fluctuations of one crustacean and two fish species, depending on the time of day. In order to check the accuracy of the results obtained, we further analysed the dataset for short-term effects of continuous trawling at the same track on the abundance of individual species. No direct effect on the abundance of particular species was detected, but the analysis revealed a periodic fluctuation of the mean number of individuals and the mean catch volume.

  7. Reverse optical trawling for synaptic connections in situ.

    PubMed

    Sasaki, Takuya; Minamisawa, Genki; Takahashi, Naoya; Matsuki, Norio; Ikegaya, Yuji

    2009-07-01

    We introduce a new method to unveil the network connectivity among dozens of neurons in brain slice preparations. While synaptic inputs were whole cell recorded from given postsynaptic neurons, the spatiotemporal firing patterns of presynaptic neuron candidates were monitored en masse with functional multineuron calcium imaging, an optical technique that records action potential-evoked somatic calcium transients with single-cell resolution. By statistically screening the neurons that exhibited calcium transients immediately before the postsynaptic inputs, we identified the presynaptic cells that made synaptic connections onto the patch-clamped neurons. To enhance the detection power, we devised the following points: 1) [K+]e was lowered and [Ca2+]e and [Mg2+]e were elevated, to reduce background synaptic activity and minimize the failure rate of synaptic transmission; and 2) a small fraction of presynaptic neurons was specifically activated by glutamate applied iontophoretically through a glass pipette that was moved to survey the presynaptic network of interest ("trawling"). Then we could theoretically detect 96% of presynaptic neurons activated in the imaged regions with a 1% false-positive error rate. This on-line probing technique would be a promising tool in the study of the wiring topography of neuronal circuits. PMID:19386760

  8. Commercial bottom trawling: a driver of deep seascape evolution in the Anthropocene?

    NASA Astrophysics Data System (ADS)

    Martín, Jacobo; Puig, Pere; Canals, Miquel; Company, Joan B.; Amblas, David; Lastras, Galderic; Palanques, Albert; Calafat, Antoni M.

    2013-04-01

    The offshore displacement of bottom trawling fleets has raised concerns over the impact of this human activity on deep-sea ecosystems and associated living resources, which are characterized by a lower resilience than shallow water correlatives. However, the effects of bottom trawling on sediment remobilization across continental margins and on the alteration of seafloor morphology still remain largely unaddressed. We present a compilation of results from studies conducted during the last decade in the La Fonera (Palamós) submarine canyon (NW Mediterranean Sea), where a bottom trawling fishing fleet is active on a daily basis at depths from 400 to 800 m. Deployments of mooring lines equipped with punctual and profiling current-meters, turbidimeters and sediment traps have documented that trawling gears passing along the canyon flanks generate daily sediment gravity flows, implying a periodic sediment removal from fishing grounds. These sediment-laden flows are able to reach the main canyon axis and progress to a minimum depth of 1200 m. Also, sediment accumulation rates in the lower canyon have increased since the industrialization of the local trawling fleet (1970s), suggesting a human-induced enhancement of along-canyon transfer of sediments from the fishing grounds to greater depths. Sedimentological and Pb-210 analysis of interface sediment cores collected from the canyon flanks confirm that widespread erosion and stirring of surface sediments is notable on trawled areas when compared to control (untrawled) sites at similar depths. This chronic reworking and removal of surface sediments from trawling grounds has ultimately led to modifications of the seafloor morphology over large spatial scales, as revealed by high-resolution multibeam bathymetry and Vessel Monitoring Systems (VMS) data sets. Untrawled canyon flank segments are dominated by a dense network of tributary valleys that progress upslope from the main canyon axis, reaching up to five orders of

  9. Deciphering the lithological consequences of bottom trawling to sedimentary habitats on the shelf

    NASA Astrophysics Data System (ADS)

    Oberle, Ferdinand K. J.; Swarzenski, Peter W.; Reddy, Christopher M.; Nelson, Robert K.; Baasch, Benjamin; Hanebuth, Till J. J.

    2016-07-01

    Widespread bottom trawling on the NW Iberian shelf causes chronic sediment and habitat disturbance. The few studies that have investigated vessel-modified sedimentary-structure and texture of the seabed have typically classified their results as being either impacted by trawling or not. This study indicates that bottom trawling can result in a sequence of vastly different effects to the lithology of seabed sediment, which have in turn different ecological consequences. Here, we combined very high-resolution spatial bottom-trawling data with sedimentological (grain size, porosity) and geochemical datasets (excess 210Pb, 3D petroleum fingerprinting) to study sediment disturbance, including sorting and mixing. Our results were used to develop five conceptual disturbance scenarios: minimal seabed effects, sediment overturning, complete sediment mixing, sediment grading and layering, and loss of sediment. Considering that bottom trawling is a widespread and growing global fishing technique, such impacts need to be considered in the management of habitat conservation as well as in the reconstruction of late Holocene climate history from shallow-water deposits, not just on the NW Iberian shelf, but also globally.

  10. 77 FR 19147 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-03-30

    ... February 29, 2012 (77 FR 13013, March 5, 2012). As of March 21, 2012, NMFS has determined that... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Bering Sea and Aleutian... directed fishing for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian...

  11. 75 FR 56017 - Fisheries of the Exclusive Economic Zone Off Alaska; Shallow-Water Species by Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-15

    ... under Sec. 679.21(d)(7)(i) on September 3, 2010 (75 FR 54290, September 7, 2010). NMFS has determined... Economic Zone Off Alaska; Shallow- Water Species by Vessels Using Trawl Gear in the Gulf of Alaska AGENCY...-water species by vessels using trawl gear in the Gulf of Alaska (GOA). This action is necessary to...

  12. 78 FR 13812 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catch Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-01

    ...)(iii) on February 14, 2013 (78 FR 11790, February 20, 2013). As of February 25, 2013, NMFS has... directed fishing for Pacific cod by catcher vessels (CVs) using trawl gear in the Western Regulatory Area... allowance of the 2013 Pacific cod total allowable catch apportioned to CVs using trawl gear in the...

  13. 77 FR 19564 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-02

    ... established by the final 2012 and 2013 harvest specifications for groundfish of the GOA (77 FR 15194, March 14... for Pacific cod by catcher vessels (CVs) using trawl gear in the Central Regulatory Area of the Gulf... Pacific cod total allowable catch apportioned to CVs using trawl gear in the Central Regulatory Area...

  14. 75 FR 12463 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-03-16

    ...NMFS is prohibiting directed fishing for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian Islands management area (BSAI). This action is necessary to prevent exceeding the A season allowance of the 2010 Pacific cod allowable catch (TAC) specified for catcher vessels using trawl gear in the...

  15. 77 FR 23159 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-18

    ... harvest specifications for groundfish in the BSAI (77 FR 10669, February 23, 2012). In accordance with Sec... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Bering Sea and Aleutian... for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian Islands...

  16. 76 FR 20891 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-14

    ...NMFS is opening directed fishing for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian Islands Management Area (BSAI). This action is necessary to fully use the B season allowance of the 2011 total allowable catch (TAC) of Pacific cod allocated to catcher vessels using trawl gear in the...

  17. 76 FR 18663 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-05

    ...NMFS is prohibiting directed fishing for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian Islands management area (BSAI). This action is necessary to prevent exceeding the B season allowance of the 2011 Pacific cod allowable catch (TAC) specified for catcher vessels using trawl gear in the...

  18. 75 FR 16359 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-01

    ... harvest specifications for groundfish in the BSAI (75 FR 11788, March 12, 2010). In accordance with Sec... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Bering Sea and Aleutian... for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian Islands...

  19. SUMMER FISH COMMUNITY OF THE COASTAL NORTHERN GULF OF MEXICO: CHARACTGERIZATION OF A LARGE-SCALE TRAWL SURVEY

    EPA Science Inventory

    This paper summarizes the trawled fish assemblage collected during 1992 - 1994 at 119 locations in the northern Gulf of Mexico. The 367 collection sites were located adjacent to five states and represented seven estuarine categories. Fish were collected using an otter trawl durin...

  20. Trawling disturbance on the isotopic signature of a structure-building species, the sea urchin Gracilechinus acutus (Lamarck, 1816)

    NASA Astrophysics Data System (ADS)

    González-Irusta, José M.; Preciado, Izaskun; López-López, Lucia; Punzón, Antonio; Cartes, Joan E.; Serrano, Alberto

    2014-08-01

    Bottom trawling is one of the main sources of anthropogenic disturbance in benthic habitats with important direct and indirect effects on the ecosystem functional diversity. In this study, the effect of this impact on a structure-building species, the sea urchin Gracilechinus acutus, was studied in the Central Cantabrian Sea (southern Bay of Biscay) comparing its isotopic signature and additional population descriptors across different trawling pressures. Trawling disturbance had a significant effect on the studied descriptors. In trawling areas, this urchin showed significantly lower values of biomass and mean size and significantly higher values of fullness index. Moreover, the trawling disturbance effect was also significant in the isotopic signature of G. acutus. Urchins inhabiting untrawled areas showed significant lower values of δ15N than urchins dwelling areas under trawling pressure. The urchins' isotopic enrichment increased along the species ontogeny regardless of the trawling effort level. Stable isotope analyses are a suitable tool to detect trawling disturbance on the trophic pathways but do not suffice to explain these changes, especially if there is a lack of baseline information.

  1. 78 FR 17340 - Control Date for Qualifying Landings History in the Western Gulf of Alaska Trawl Groundfish...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-21

    ...; 63 FR 52642). Over the past few years, the Council has recommended amendments to the FMP to reduce... approved, Chinook PSC limits in the GOA pollock (Theragra chalcogramma) trawl fisheries (77 FR 42629, July... Landings History in the Western Gulf of Alaska Trawl Groundfish Fisheries AGENCY: National Marine...

  2. 75 FR 61642 - Fisheries of the Exclusive Economic Zone Off Alaska; Modified Nonpelagic Trawl Gear and Habitat...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-10-06

    ... near the Bering Strait that was open to nonpelagic trawling (Figure 2) but that will now be closed. The... Natives in the Bering Strait region have voiced their opposition to any nonpelagic trawling in the... failure of NMFS to include any of the subsistence-based communities in the Bering Strait region in...

  3. Trawling bats exploit an echo-acoustic ground effect

    PubMed Central

    Zsebok, Sandor; Kroll, Ferdinand; Heinrich, Melina; Genzel, Daria; Siemers, Björn M.; Wiegrebe, Lutz

    2013-01-01

    A water surface acts not only as an optic mirror but also as an acoustic mirror. Echolocation calls emitted by bats at low heights above water are reflected away from the bat, and hence the background clutter is reduced. Moreover, targets on the surface create an enhanced echo. Here, we formally quantified the effect of the surface and target height on both target detection and -discrimination in a combined laboratory and field approach with Myotis daubentonii. In a two-alternative, forced-choice paradigm, the bats had to detect a mealworm and discriminate it from an inedible dummy (20 mm PVC disc). Psychophysical performance was measured as a function of height above either smooth surfaces (water or PVC) or above a clutter surface (artificial grass). At low heights above the clutter surface (10, 20, or 35 cm), the bats' detection performance was worse than above a smooth surface. At a height of 50 cm, the surface structure had no influence on target detection. Above the clutter surface, also target discrimination was significantly impaired with decreasing target height. A detailed analysis of the bats' echolocation calls during target approach shows that above the clutter surface, the bats produce calls with significantly higher peak frequency. Flight-path reconstruction revealed that the bats attacked an target from below over water but from above over a clutter surface. These results are consistent with the hypothesis that trawling bats exploit an echo-acoustic ground effect, in terms of a spatio-temporal integration of direct reflections with indirect reflections from the water surface, to optimize prey detection and -discrimination not only for prey on the water but also for some range above. PMID:23576990

  4. Trawling-induced alterations of deep-sea sediment accumulation rates during the Anthropocene

    NASA Astrophysics Data System (ADS)

    Puig, P.; Paradis, S.; Masque, P.; Martin, J.; Juan, X.; Palanques, A.

    2015-12-01

    Commercial bottom trawling causes direct physical disturbance of the marine sedimentary environments by scraping and ploughing the seabed, generating periodic resuspension of surface sediments. However, the quantification of the sediment that is removed by trawling and exported across the continental margin remains largely unaddressed, and the preservation of the signal of such impacts in the geological record have been mostly overlooked. The analysis of sediment cores collected along the Catalan margin (NW Mediterranean) has allowed evaluating the contribution of this anthropogenic activity to the present-day sediment dynamics. Sediment cores at intensively trawled sites are characterized by over-consolidated sediments with lower 210Pb surface concentrations and inventories that indicate widespread erosion of recent sedimentary deposits. In turn, combined 210Pb and 137Cs chronologies indicate a significant increase of sediment accumulation rates within submarine canyon environments since the 1970s, coincidently with a strong impulse in the industrialization of the trawling fleets of this region. Two sampling sites that exhibited high sediment accumulation rates (0.6-0.7 cm/y) were reoccupied 1-2 decades after the first studies and revealed a second and even larger increase of sediment accumulation rates (>2 cm/y) occurring at the beginning of the XXI century. This recent change has been attributed to a preferential displacement of the trawling fleet towards fishing grounds surrounding submarine canyons and, also, to technical improvements in trawling vessels, presumably related to financial subsidies provided to the fishing sector. The alteration of sediment accumulation rates described in this continental margin may occur in many regions of the World's oceans given the wide geographical distribution of this human activity, and therefore, it could represent a potential marker of the Anthropocene in deep-sea environments.

  5. Modelling bottom trawling-generated sediment flows in La Fonera submarine canyon (Northwestern Mediterranean Sea)

    NASA Astrophysics Data System (ADS)

    Payo-Payo, Marta; Silva Jacinto, Ricardo; Lastras, Galderic; Canals, Miquel; Puig, Pere; Martín, Jacobo; Sanchez-Vidal, Anna; Rabineau, Marina

    2015-04-01

    Bottom-trawling is one of the anthropogenic activities with a stronger and more widespread impact on the seafloor. Physical processes involved in sediment resuspension due to trawling and the resulting sediment-laden flows are not fully understood. The amount and fate of remobilized sediments are of the utmost relevance for establishing present-day continental margin sediment budgets. Resuspension by bottom trawling leads to massive transfer of sediment from shallower to deeper areas practically worldwide. La Fonera submarine canyon is a large, deeply-incised active canyon in the Northwestern Mediterranean Sea. It presents complex sediment transport dynamics associated to littoral drift and extreme events such as dense shelf water cascading and severe storms. Recent studies have revealed recurrent peaks in near-bottom current speed and suspended sediment concentration in the northern flank of the canyon synchronously with trawling. Aiming at simulating sediment-loaded fluxes triggered by trawling and their interaction with the seafloor in La Fonera canyon, we have implemented a numerical process-based model developed to reproduce such flows. Mooring data have been used both to calibrate the modelled sediment fluxes. Good agreement between model and monitoring data has been found, with modelled peaks of suspended sediment concentration values exceeding 120 mg-l-1 and current speed measurements of up to 40 cm-s-1 at the mooring site. Moreover, we have quantified fishing activity over the canyon flanks through modelling and have obtained the propagation pattern of sediment flows from the fishing ground downward the canyon. Our results confirm the value of numerical models to complete and enlarge our understanding of the sedimentary transfer processes from shallow to deep in the ocean. Besides, they allow establishing quantitative comparisons between trawling impact and natural forcing on the sediments dynamics of La Fonera submarine canyon.

  6. Trawling-induced daily sediment resuspension in the flank of a Mediterranean submarine canyon

    NASA Astrophysics Data System (ADS)

    Martín, Jacobo; Puig, Pere; Palanques, Albert; Ribó, Marta

    2014-06-01

    Commercial bottom trawling is one of the anthropogenic activities causing the biggest impact on the seafloor due to its recurrence and global distribution. In particular, trawling has been proposed as a major driver of sediment dynamics at depths below the reach of storm waves, but the issue is at present poorly documented with direct observations. This paper analyses changes in water turbidity in a tributary valley of the La Fonera (=Palamós) submarine canyon, whose flanks are routinely exploited by a local trawling fleet down to depths of 800 m. A string of turbidimeters was deployed at 980 m water depth inside the tributary for two consecutive years, 2010-2011. The second year, an ADCP profiled the currents 80 m above the seafloor. The results illustrate that near-bottom water turbidity at the study site is heavily dominated, both in its magnitude and temporal patterns, by trawling-induced sediment resuspension at the fishing ground. Resuspended sediments are channelised along the tributary in the form of sediment gravity flows, being recorded only during working days and working hours of the trawling fleet. These sediment gravity flows generate turbid plumes that extend to at least 100 m above the bottom, reaching suspended sediment concentrations up to 236 mg l-1 close to the seafloor (5 m above bottom). A few hours after the end of daily trawling activities, water turbidity progressively decreases but resuspended particles remain in suspension for several hours, developing bottom and intermediate nepheloid layers that reach background levels ˜2 mg l-1 before trawling activities resume. The presence of these nepheloid layers was recorded in a CTD+turbidimeter transect conducted across the fishing ground a few hours after the end of a working day. These results highlight that deep bottom trawling can effectively replace natural processes as the main driving force of sediment resuspension on continental slope regions and generate increased near-bottom water

  7. Use of a fishery-independent trawl survey to evaluate distribution patterns of subadult sharks in Georgia

    USGS Publications Warehouse

    Belcher, C.N.; Jennings, Cecil A.

    2009-01-01

    We investigated the utility of a fishery-independent trawl survey for assessing a potential multispecies shark nursery in Georgia's nearshore and inshore waters. A total of 234 subadult sharks from six species were captured during 85 of 216 trawls. Catch rates and size distributions for subadult sharks and the ratio of neonates to juveniles were consistent among areas. The highest concentrations of subadult sharks occurred in creeks and sounds. Species composition varied among areas. The Atlantic sharpnose shark Rhizoprionodon terraenovae was the most abundant species in sound and nearshore stations, whereas the bonnethead Sphyrna tiburo was the most abundant species in creeks. The aggregate of other species occurred with higher frequency in the sounds and nearshore. Sampling characteristics of the trawl survey were compared with those from a fishery-independent longline survey of subadult sharks to assess the similarity of the two gears. A total of 193 subadult sharks from seven species were captured during 57 of 96 longline sets, whereas 52 subadults from four species were captured during 20 of 48 trawls. Selectivity and efficiency differed between the two gears. The trawl had lower catch rates, caught smaller sharks, and encountered a different suite of species than the longline. General seasonal trends in relative abundance also differed between the two gears; the longline showed an increasing trend in abundance, whereas the trawl showed a stable trend. Although trawls were not found to be efficient for sampling subadult sharks from most species, they can be a useful source of supplemental data.

  8. 50 CFR Figure 1 to Part 660... - Diagram of Selective Flatfish Trawl

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Diagram of Selective Flatfish Trawl 1 Figure 1 to Part 660, Subpart D Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL... Pt. 660, Subpt. D, Fig. 1 Figure 1 to Part 660, Subpart D—Diagram of Selective Flatfish...

  9. 50 CFR Figure 1 to Part 660... - Diagram of Selective Flatfish Trawl

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Diagram of Selective Flatfish Trawl 1 Figure 1 to Part 660, Subpart D Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL... Pt. 660, Subpt. D, Fig. 1 Figure 1 to Part 660, Subpart D—Diagram of Selective Flatfish...

  10. 50 CFR Figure 1 to Part 660... - Diagram of Selective Flatfish Trawl

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Diagram of Selective Flatfish Trawl 1 Figure 1 to Part 660, Subpart D Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL... Pt. 660, Subpt. D, Fig. 1 Figure 1 to Part 660, Subpart D—Diagram of Selective Flatfish...

  11. 50 CFR Figure 1 to Part 660... - Diagram of Selective Flatfish Trawl

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Diagram of Selective Flatfish Trawl 1 Figure 1 to Part 660, Subpart D Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL... Pt. 660, Subpt. D, Fig. 1 Figure 1 to Part 660, Subpart D—Diagram of Selective Flatfish...

  12. 50 CFR Figure 1 to Part 660... - Diagram of Selective Flatfish Trawl

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Diagram of Selective Flatfish Trawl 1 Figure 1 to Part 660, Subpart D Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL... Pt. 660, Subpt. D, Fig. 1 Figure 1 to Part 660, Subpart D—Diagram of Selective Flatfish...

  13. 50 CFR Figure 6 to Part 223 - TED Extension in Summer Flounder Trawl

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 10 2013-10-01 2013-10-01 false TED Extension in Summer Flounder Trawl 6 Figure 6 to Part 223 Wildlife and Fisheries NATIONAL MARINE FISHERIES SERVICE, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE MARINE MAMMALS THREATENED MARINE AND ANADROMOUS SPECIES...

  14. 50 CFR Figure 12 to Part 679 - Bristol Bay Trawl Closure Area

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Bristol Bay Trawl Closure Area 12 Figure 12 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE...

  15. 50 CFR Figure 12 to Part 679 - Bristol Bay Trawl Closure Area

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Bristol Bay Trawl Closure Area 12 Figure 12 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE...

  16. 50 CFR Figure 12 to Part 679 - Bristol Bay Trawl Closure Area

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Bristol Bay Trawl Closure Area 12 Figure 12 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE...

  17. 50 CFR Figure 6 to Part 223 - TED Extension in Summer Flounder Trawl

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 7 2010-10-01 2010-10-01 false TED Extension in Summer Flounder Trawl 6 Figure 6 to Part 223 Wildlife and Fisheries NATIONAL MARINE FISHERIES SERVICE, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE MARINE MAMMALS THREATENED MARINE AND ANADROMOUS SPECIES...

  18. 50 CFR Figure 6 to Part 223 - TED Extension in Summer Flounder Trawl

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 10 2012-10-01 2012-10-01 false TED Extension in Summer Flounder Trawl 6 Figure 6 to Part 223 Wildlife and Fisheries NATIONAL MARINE FISHERIES SERVICE, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE MARINE MAMMALS THREATENED MARINE AND ANADROMOUS SPECIES...

  19. 50 CFR Figure 26 to Part 679 - Modified Nonpelagic Trawl Gear

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Modified Nonpelagic Trawl Gear 26 Figure 26 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE...

  20. 50 CFR Figure 6 to Part 223 - TED Extension in Summer Flounder Trawl

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 9 2011-10-01 2011-10-01 false TED Extension in Summer Flounder Trawl 6 Figure 6 to Part 223 Wildlife and Fisheries NATIONAL MARINE FISHERIES SERVICE, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE MARINE MAMMALS THREATENED MARINE AND ANADROMOUS SPECIES...

  1. 78 FR 7371 - Fisheries Off West Coast States; Pacific Coast Groundfish Fishery; Trawl Rationalization Program...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-02-01

    ... million loan to the industry that was to be paid by assessing buyback fees on landings (70 FR 40225, July... FR 33980, June 8, 2012) would establish procedures for the National Appeals Office to review, and if... States; Pacific Coast Groundfish Fishery; Trawl Rationalization Program; Cost Recovery AGENCY:...

  2. 50 CFR Figure 6 to Part 223 - TED Extension in Summer Flounder Trawl

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 10 2014-10-01 2014-10-01 false TED Extension in Summer Flounder Trawl 6 Figure 6 to Part 223 Wildlife and Fisheries NATIONAL MARINE FISHERIES SERVICE, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE MARINE MAMMALS THREATENED MARINE AND ANADROMOUS SPECIES Pt. 223, Fig. 6 Figure 6 to Part...

  3. 77 FR 45508 - Fisheries off West Coast States; Pacific Coast Groundfish Fishery Management Plan; Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-08-01

    ...This action delays some and revises other portions of the Pacific Coast Groundfish Fishery Trawl Rationalization Program (program) regulations. These changes are necessary to enable the National Marine Fisheries Service (NMFS) to implement new regulations for the program to comply with a court order requiring NMFS to reconsider the initial allocation of Pacific whiting (whiting) to the......

  4. 78 FR 72 - Fisheries Off West Coast States; Pacific Coast Groundfish Fishery Management Plan; Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-02

    ... coast groundfish fishery's trawl fleet (see 75 FR 78344; Dec. 15, 2010). The program was adopted in 2010... follow. NMFS published the ANPR on April 4, 2012 (77 FR 20337), which, among other things, announced the... 21, 2012 (77 FR 29955), with the final rule published on August 1, 2012 (77 FR 45508). RAW 1...

  5. 77 FR 29955 - Fisheries Off West Coast States; Pacific Coast Groundfish Fishery Management Plan; Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-05-21

    ... rationalization program for the Pacific coast groundfish fishery's trawl fleet (see 75 FR 78344; Dec. 15, 2010... ANPR on April 4, 2012 (77 FR 20337) that, among other things, announced the court's order, the Council...'' is in the Federal Register. 62 FR 44421; August 21, 1997. This guidance defines an emergency as...

  6. 50 CFR 660.333 - Open access non-groundfish trawl fishery-management measures.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... engaged in fishing for pink shrimp, ridgeback prawns, California halibut, or sea cucumbers. Trip limits for groundfish retained in the ridgeback prawn, California halibut, or sea cucumber fisheries are in... the tail.” (d) Participation in the sea cucumber fishery. A trawl vessel will be considered to...

  7. 50 CFR 660.333 - Open access non-groundfish trawl fishery-management measures.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... engaged in fishing for pink shrimp, ridgeback prawns, California halibut, or sea cucumbers. Trip limits for groundfish retained in the ridgeback prawn, California halibut, or sea cucumber fisheries are in... swinging or fanning of the tail.” (2) (d) Participation in the sea cucumber fishery. A trawl vessel will...

  8. 50 CFR 660.333 - Open access non-groundfish trawl fishery-management measures.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... engaged in fishing for pink shrimp, ridgeback prawns, California halibut, or sea cucumbers. Trip limits for groundfish retained in the ridgeback prawn, California halibut, or sea cucumber fisheries are in... the tail.” (d) Participation in the sea cucumber fishery. A trawl vessel will be considered to...

  9. 50 CFR 660.115 - Trawl fishery-cost recovery program.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Trawl fishery-cost recovery program. 660.115 Section 660.115 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES West...

  10. 50 CFR 660.113 - Trawl fishery-recordkeeping and reporting.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Trawl fishery-recordkeeping and reporting. 660.113 Section 660.113 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST...

  11. 50 CFR 660.114 - Trawl fishery-economic data collection program.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Trawl fishery-economic data collection program. 660.114 Section 660.114 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST...

  12. 50 CFR 660.113 - Trawl fishery-recordkeeping and reporting.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Trawl fishery-recordkeeping and reporting. 660.113 Section 660.113 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST...

  13. 50 CFR 660.114 - Trawl fishery-economic data collection program.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Trawl fishery-economic data collection program. 660.114 Section 660.114 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST...

  14. 50 CFR 660.333 - Open access non-groundfish trawl fishery-management measures.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Open access non-groundfish trawl fishery-management measures. 660.333 Section 660.333 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF...

  15. 50 CFR 660.114 - Trawl fishery-economic data collection program.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Trawl fishery-economic data collection program. 660.114 Section 660.114 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST...

  16. 50 CFR 660.381 - Limited entry trawl fishery management measures.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Limited entry trawl fishery management measures. 660.381 Section 660.381 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST...

  17. 50 CFR 622.25 - Exemptions for the Gulf groundfish trawl fishery.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 12 2013-10-01 2013-10-01 false Exemptions for the Gulf groundfish trawl fishery. 622.25 Section 622.25 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE FISHERIES OF THE CARIBBEAN, GULF OF...

  18. 50 CFR 660.114 - Trawl fishery-economic data collection program.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Trawl fishery-economic data collection program. 660.114 Section 660.114 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST...

  19. 50 CFR 660.113 - Trawl fishery-recordkeeping and reporting.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Trawl fishery-recordkeeping and reporting. 660.113 Section 660.113 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST...

  20. 50 CFR 660.333 - Open access non-groundfish trawl fishery-management measures.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Open access non-groundfish trawl fishery-management measures. 660.333 Section 660.333 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF...

  1. 50 CFR 660.113 - Trawl fishery-recordkeeping and reporting.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Trawl fishery-recordkeeping and reporting. 660.113 Section 660.113 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST...

  2. 50 CFR 660.113 - Trawl fishery-recordkeeping and reporting.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Trawl fishery-recordkeeping and reporting. 660.113 Section 660.113 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST...

  3. Evaluating ecosystem-based management options: Effects of trawling in Torres Strait, Australia

    NASA Astrophysics Data System (ADS)

    Ellis, Nick; Pantus, Francis; Welna, Andrzej; Butler, Alan

    2008-09-01

    A suite of management options for a prawn trawl fishery in Torres Strait, Australia was assessed for impacts on the benthic fauna using a dynamic management strategy evaluation approach. The specification of the management options was gained through consultation with stakeholders. Data for the model was drawn from several sources: the fleet data from fishery logbooks and satellite vessel monitoring systems, benthic depletion rates from trawl-down experiments, benthic recovery rates from post-experiment recovery monitoring studies, and benthic distribution from large-scale benthic surveys. Although there were large uncertainties in the resulting indicators, robust measures relevant to management were obtained by taking ratios relative to the status quo. The management control with the biggest effect was total effort; reducing trawl effort always led to increases in benthic faunal density of up to 10%. Spatial closures had a smaller benefit of up to 2%. The effect of closing a set of buffer zones around reefs to trawling was indistinguishable from the status quo option. Closing a larger area, however, was largely beneficial especially for sea cucumbers. When the spatial distributions of fauna prior to fishing were accounted for, fauna with distributions positively correlated with effort improved relative to those negatively correlated. The reduction in prawn catch under effort reduction scenarios could be ameliorated by introducing temporal closures over the full-moon period.

  4. 76 FR 50449 - Fisheries off West Coast States; Pacific Coast Groundfish Fishery Management Plan; Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-08-15

    ... the trawl rationalization program, a catch share program, implemented in January 2011 through... Administrator, Northwest Region, NMFS, 7600 Sand Point Way NE., Seattle, WA 98115-0070, Attn: Jamie Goen... program, a catch share program, implemented in January 2011 through Amendments 20 and 21. Amendment...

  5. 75 FR 73979 - Fisheries of the Northeastern United States; Discard Provision for Herring Midwater Trawl Vessels...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-11-30

    ... INFORMATION: Background On September 4, 2009, NMFS published a proposed rule (74 FR 45798) to implement... bycatch in the midwater trawl fishery. A final rule was published on November 2, 2009 (74 FR 56562), that... by the observer. The regulations implemented by the November 2, 2009, rule (74 FR 56562) provided...

  6. Sensitivity of macrobenthic secondary production to trawling in the English sector of the Greater North Sea: A biological trait approach

    NASA Astrophysics Data System (ADS)

    Bolam, S. G.; Coggan, R. C.; Eggleton, J.; Diesing, M.; Stephens, D.

    2014-01-01

    Demersal trawling constitutes the most significant human impact on both the structure and functioning of coastal seabed fauna. While a number of studies have assessed the impacts of trawling on faunal community structure and the degree to which different taxa are vulnerable to trawling, few have focused on how these impacts affect important ecological functions of the seabed. In this study, we use biological trait analysis (BTA) to assess the relative sensitivity of benthic macrofauna to trawling, in both the short- and long-term, and use this information to describe the spatial variation in sensitivity of secondary production for the Greater North Sea (GNS). Within the GNS, estimates of total production varied by almost three orders of magnitude, from 1.66 kJ m- 2 y- 1 to 968.9 kJ m- 2 y- 1. Large-scale patterns were observed in the proportion of secondary production derived from trawling-sensitive taxa. In the southern North Sea, total production is predominantly governed by taxa with low sensitivity to trawling, whereas production is relatively trawling-sensitive in the northern North Sea and western English Channel. In general, the more sensitive and productive regions are associated with poorly-sorted, gravelly or muddy sediments, while the less sensitive and less productive regions are associated with well-sorted, sandy substrates. These relationships between production sensitivity and environmental features are primarily due to variations in long-term recovery; total production of most assemblages is highly sensitive to the direct impacts of trawling. We discuss the implications of these findings for management 1decisions to improve the environmental sustainability of trawling.

  7. How Many Fish Need to Be Measured to Effectively Evaluate Trawl Selectivity?

    PubMed Central

    Santos, Juan; Sala, Antonello

    2016-01-01

    The aim of this study was to provide practitioners working with trawl selectivity with general and easily understandable guidelines regarding the fish sampling effort necessary during sea trials. In particular, we focused on how many fish would need to be caught and length measured in a trawl haul in order to assess the selectivity parameters of the trawl at a designated uncertainty level. We also investigated the dependency of this uncertainty level on the experimental method used to collect data and on the potential effects of factors such as the size structure in the catch relative to the size selection of the gear. We based this study on simulated data created from two different fisheries: the Barents Sea cod (Gadus morhua) trawl fishery and the Mediterranean Sea multispecies trawl fishery represented by red mullet (Mullus barbatus). We used these two completely different fisheries to obtain results that can be used as general guidelines for other fisheries. We found that the uncertainty in the selection parameters decreased with increasing number of fish measured and that this relationship could be described by a power model. The sampling effort needed to achieve a specific uncertainty level for the selection parameters was always lower for the covered codend method compared to the paired-gear method. In many cases, the number of fish that would need to be measured to maintain a specific uncertainty level was around 10 times higher for the paired-gear method than for the covered codend method. The trends observed for the effect of sampling effort in the two fishery cases investigated were similar; therefore the guidelines presented herein should be applicable to other fisheries. PMID:27560696

  8. Investigation of Edge Plasma Features in the HL-1M Tokamak

    NASA Astrophysics Data System (ADS)

    Yan, Long-wen; Yang, Shi-kun; Hong, Wen-yu; Wang, En-yao; Qian, Jun

    1999-12-01

    Edge plasma features in typical HL-1M discharges were presented. Particle confinement and plasma rotation have been investigated in the discharges with lower hybrid current drive (LHCD), molecular beam injection (MBI) and pellet fuelling. LHCD can make particle confinement increase a factor of 2-3 for low-density discharge. Particle confinement time and poloidal rotation can be at least doubled after pellet injection, while MBI can make confinement time increase about one order of magnitude with higher performance.

  9. Influence of bottom trawling on sediment resuspension in the `Grande-Vasière' area (Bay of Biscay, France)

    NASA Astrophysics Data System (ADS)

    Margvelashvili, Nugzar Yu; Herzfeld, Mike; Rizwi, Farhan; Mongin, Mathieu; Baird, Mark E.; Jones, Emlyn; Schaffelke, Britta; King, Edward; Schroeder, Thomas

    2016-08-01

    Sea trials were performed on two zones with different fishing efforts on the continental shelf of the Bay of Biscay (`Grande-Vasière' area of muddy sand) in order to assess particulate matter resuspension and seabed disturbances (i.e., penetration, reworking, grain size changes) induced by different types of trawls. Optical and acoustic measurements made in the water column indicate a significant trawling-induced resuspension mainly due to the scraping action of doors. It manifests as a highly dynamic turbid plume confined near the seabed, where suspended sediment concentrations can reach 200 mg l-1. Concentration levels measured behind an "alternative" configuration (trawls with jumper doors instead of classical doors penetrating the sediment) are significantly lower (around 10-20 mg l-1), which indicates a potential limiting impact regarding the seabed. Grain size analyses of the surficial sediment led to highlight a potential reworking influence of bottom trawling. On the intensively trawled zone, this reworking manifests as an upward coarsening trend in the first 5 cm of the cores. A significant decrease in mud content (30 %) has been also witnessed on this zone between 1967 and 2014, which suggests an influence on the seabed evolution. The geometric analysis of bottom tracks (4-5-cm depth, 20-cm width) observed with a benthic video sledge was used to compute an experimental trawling-induced erosion rate of 0.13 kg m-2. This erosion rate was combined with fishing effort data, in order to estimate trawling-induced erosion fluxes which were then compared to natural erosion fluxes over the Grande-Vasière at monthly, seasonal and annual scales. Winter storms control the annual resuspended load and trawling contribution to annual resuspension is in the order of 1 %. However, results show that trawling resuspension can become dominant during the fishing high season (i.e., until several times the natural one in summer). In addition, the contribution of trawling

  10. Trawling-induced resuspension and dispersal of muddy sediments and dissolved elements in the Gulf of Lion (NW Mediterranean)

    NASA Astrophysics Data System (ADS)

    Durrieu de Madron, X.; Ferré, B.; Le Corre, G.; Grenz, C.; Conan, P.; Pujo-Pay, M.; Buscail, R.; Bodiot, O.

    2005-12-01

    A dedicated trawling experiment was performed at three sites on the Gulf of Lion continental shelf, with the aim of assessing the resuspension of particulate and dissolved matter triggered by different types of trawls on muddy sediments. The different configurations were: (i) bottom trawl, with bobbin for ground rope (Rockhopper): (ii) bottom trawl, without bobbin (Medits); and (iii) pelagic trawl, towed at 1 and 10 m above the seabed. The plumes of resuspended sediment were measured using the acoustic backscattered intensity, from a towed ADCP. Concomitant profiles of particle size-distribution, light transmission and water samples were collected, outside and inside the plumes. The analysis of the data enabled derivation of the major physical and chemical characteristics of the plumes generated by the trawls; likewise, and to quantify the resuspension fluxes of sediment, particulate (PN, POC) and dissolved (nutrients) elements. The residence time and dispersal of the plumes were monitored and modelled, considering the settling velocity of the particulate matter and the near-bottom turbulence. The results indicate that the bottom trawls produce significant resuspension, whilst the near-bottom and mid-water pelagic trawls have no impact upon the sediment. The sediment clouds at several hundreds metres astern of the bottom trawls are 3-6 m high and 70-200 m wide; they were generated both by the otter doors and the net. The average suspended sediment concentrations measured in the plumes reach 50 mg l -1. Resuspension fluxes of sediment along the path of the trawls range from 190 g m -2 s -1, for the coarsest sediment (clayey silt) to 800 g m -2 s -1 for the finest sediment (silty clay). Whilst the resuspended loads of dissolved elements (nutrients) within the plume segment suggest a release of porewater, present at least in the first few centimetres of sediment, the particulate matter load only resulted from the resuspension of less than 1 mm thickness of the

  11. Evaluation of bottom trawls as compared to acoustics to assess adult Lake Herring (Coregonus artedi) abundance in Lake Superior

    USGS Publications Warehouse

    Stockwell, J.D.; Yule, D.L.; Gorman, O.T.; Isaac, E.J.; Moore, S.A.

    2006-01-01

    We compared density estimates from day bottom trawl tows against night midwater trawl tows and acoustic gear to test the hypothesis that adult lake herring (≥250 mm) are underestimated by day bottom trawl tows during the annual USGS spring fish community survey in Lake Superior. We found average density at nine nearshore stations was significantly higher at night (21.3 adult fish/ha) compared to day (1.0 adult fish/ha; p = 0.0119). At nine offshore stations, no lake herring were captured during the day but density averaged 39.6 adult fish/ha at night. At a lakewide scale (n = 18 stations), precision (relative standard error) was much better using night midwater trawls and acoustic gear (37%) compared to day bottom trawls (100%). Moderate sample size increases using the former methodology would likely bring precision within recommended levels (≤30%) for stock-recruit data sets. Our results suggest that 1) population abundances of adult lake herring in Lake Superior are much higher than previously considered, 2) the annual spring fish community survey may not provide a relative index of abundance of adult lake herring, 3) night midwater trawls and acoustic gear are necessary for assessing adult lake herring abundance, and 4) previous studies using lake herring data from the annual spring fish community survey need to be re-evaluated in light of these results. Lake herring appear to become progressively more pelagic and less susceptible to bottom trawling as they mature. Day bottom trawls appear to be an adequate tool for estimating relative density of age-1 recruits, although this method still suffers from relatively poor precision.

  12. Technical Reliability Assessment of the Actigraph GT1M Accelerometer

    ERIC Educational Resources Information Center

    Silva, Pedro; Mota, Jorge; Esliger, Dale; Welk, Gregory

    2010-01-01

    The purpose of this study was to determine the reliability of the Actigraph GT1M (Pensacola, FL, USA) accelerometer activity count and step functions. Fifty GT1M accelerometers were initialized to collect simultaneous acceleration counts and steps data using 15-sec epochs. All reliability testing was completed using a mechanical shaker plate to…

  13. Improving the design of acoustic and midwater trawl surveys through stratification, with an application to Lake Michigan prey fishes

    USGS Publications Warehouse

    Adams, J.V.; Argyle, R.L.; Fleischer, G.W.; Curtis, G.L.; Stickel, R.G.

    2006-01-01

    Reliable estimates of fish biomass are vital to the management of aquatic ecosystems and their associated fisheries. Acoustic and midwater trawl surveys are an efficient sampling method for estimating fish biomass in large bodies of water. To improve the precision of biomass estimates from combined acoustic and midwater trawl surveys, sampling effort should be optimally allocated within each stage of the survey design. Based on information collected during fish surveys, we developed an approach to improve the design of combined acoustic and midwater trawl surveys through stratification. Geographic strata for acoustic surveying and depth strata for midwater trawling were defined using neighbor-restricted cluster analysis, and the optimal allocation of sampling effort for each was then determined. As an example, we applied this survey stratification approach to data from lakewide acoustic and midwater trawl surveys of Lake Michigan prey fishes. Precision of biomass estimates from surveys with and without geographic stratification was compared through resampling. Use of geographic stratification with optimal sampling allocation reduced the variance of Lake Michigan acoustic biomass estimates by 77%. Stratification and optimal allocation at each stage of an acoustic and midwater trawl survey should serve to reduce the variance of the resulting biomass estimates.

  14. Deep-sea ecosystem response to bottom trawling impacts: changes in sediment bioturbation patterns

    NASA Astrophysics Data System (ADS)

    Puig, P.; Martin, J.; Masque, P.; Mecho, A.; Company, J. B.; Palanques, A.

    2015-12-01

    Studies conducted in La Fonera (Palamós) submarine canyon (NW Mediterranean) evidence that trawling activities along the canyon flanks cause resuspension and transport of sediments towards the canyon axis. The analysis of a sediment core collected at 1750 m in 2002 showed a doubling of the sediment accumulation rate since the 1970s, coincident with the rapid industrialization of the local trawling fleet. This occurred along with a change from bioturbated texture to well-preserved sedimentary layering, interpreted as depositional pulses of trawling-induced sediment gravity flows. The good preservation of these structures was explained as a temporary hampering of biological mixing, resulting from suffocation of bioturbating fauna. The same canyon area was revisited a decade later (2011) and new data are consistent with the sedimentary regime shift during the 1970s, but also suggest that the accumulation rate during the last decade is even greater than expected, approaching ~2.4 cm/y (compared to ~0.25 cm/y pre-1970s). The X-radiograph image from the 2011 sediment core also indicates that bioturbation, if hampered in the 2002 core, has been reactivated later. Various ichnofabrics observable in the 2011 core testify to a diverse bioturbating fauna, including a scolitia resulting from the burrowing activity of an endobenthic echinoid. Remotely operated vehicle images collected along the canyon axis seafloor evidenced a large presence and densities of the burrowing sea urchin Brissopsis lyrifera. This species has also been found in high densities in the neighbor Blanes canyon axis, while it was absent from the adjacent open slope. However, historical data indicate that B. lyrifera was present in high numbers in the slope region in previous decades, suggesting that trawling activities have modified the distribution of this burrowing species and that the canyon environment is currently functioning as refuge area that offers a suitable environment for their proliferation.

  15. Identification and evaluation of shark bycatch in Georgia's commercial shrimp trawl fishery with implications for management

    USGS Publications Warehouse

    Belcher, C.N.; Jennings, C.A.

    2011-01-01

    Many US states have recreational and commercial fisheries that occur in nursery areas occupied by subadult sharks and can potentially affect their survival. Georgia is one of few US states without a directed commercial shark fishery, but the state has a large, nearshore penaeid shrimp trawl fishery in which small sharks occur as bycatch. During our 1995–1998 investigation of bycatch in fishery-dependent sampling events, 34% of 127 trawls contained sharks. This bycatch totalled 217 individuals from six species, with Atlantic sharpnose shark, Rhizoprionodon terraenovae (Richardson), the most common and finetooth shark, Carcharhinus isodon (Müller & Henle) and spinner shark, Carcharhinus brevipinna (Müller & Henle), the least common. The highest catch rates for sharks occurred during June and July and coincided with the peak months of the pupping season for many species. Trawl tow speed and tow time did not significantly influence catch rates for shark species. Gear configurations [net type, turtle excluder device (TED), bycatch reduction device] affected catch rates for shark species. Results of this study indicate gear restrictions, a delayed season opening, or reduced bar spacing on TEDs may reduce shark bycatch in this fishery.

  16. Quantifying the Escape Mortality of Trawl Caught Antarctic Krill (Euphausia superba).

    PubMed

    Krafft, Bjørn A; Krag, Ludvig A; Engås, Arill; Nordrum, Sigve; Bruheim, Inge; Herrmann, Bent

    2016-01-01

    Antarctic krill (Euphausia superba) is an abundant fishery resource, the harvest levels of which are expected to increase. However, many of the length classes of krill can escape through commonly used commercial trawl mesh sizes. A vital component of the overall management of a fishery is to estimate the total fishing mortality and quantify the mortality rate of individuals that escape from fishing gear. The methods for determining fishing mortality in krill are still poorly developed. We used a covered codend sampling technique followed by onboard observations made in holding tanks to monitor mortality rates of escaped krill. Haul duration, hydrological conditions, maximum fishing depth and catch composition all had no significant effect on mortality of krill escaping 16 mm mesh size nets, nor was any further mortality associated with the holding tank conditions. A non- parametric Kaplan-Meier analysis was used to model the relationship between mortality rates of escapees and time. There was a weak tendency, though not significant, for smaller individuals to suffer higher mortality than larger individuals. The mortality of krill escaping the trawl nets in our study was 4.4 ± 4.4%, suggesting that krill are fairly tolerant of the capture-and-escape process in trawls. PMID:27622510

  17. Effect of Codend Circumference on the Size Selection of Square-Mesh Codends in Trawl Fisheries

    PubMed Central

    De Carlo, Francesco; Lucchetti, Alessandro

    2016-01-01

    It is well established that increasing mesh number in the circumference of a diamond-mesh trawl codend can reduce size selection for round fish, whereas selection for flat fish species is unaffected. This effect has also been documented in Mediterranean trawl fisheries. In contrast, no information is available with regard to the effect of increasing mesh number in the circumference of square-mesh codends on the size selection of round fish and flat fish species. A field study was devised to bridge this gap and formulate proposals aimed at improving trawl fishery management. Size selection data were collected for a round fish species, red mullet (Mullus barbatus), and two flat fish species, Mediterranean scaldfish (Arnoglossus laterna) and solenette (Buglossidium luteum). Fishing trials were conducted in the Adriatic Sea (Central Mediterranean) using three square-mesh codends that differed only in mesh number around the circumference. Results demonstrated that increasing the number of meshes from 107 to 213 reduced the 50% retention length (L50) for red mullet by 2.5 cm but did not affect size selection for the two flat fish species. In some fisheries, regulatory provisions regarding the number of meshes in the circumference should therefore be carefully considered both for diamond- and square-mesh codends. PMID:27472058

  18. Behavioral flexibility of the trawling long-legged bat, Macrophyllum macrophyllum (Phyllostomidae)

    PubMed Central

    Weinbeer, Moritz; Kalko, Elisabeth K. V.; Jung, Kirsten

    2013-01-01

    We assessed the behavioral flexibility of the trawling long-legged bat, Macrophyllum macrophyllum (Phyllostomidae) in flight cage experiments by exposing it to prey suspended from nylon threads in the air and to food placed onto the water surface at varying distances to clutter-producing background (water plants). The bat revealed flexibility in foraging mode and caught prey in the air (aerial hawking) and from the water surface (trawling). M. macrophyllum was constrained in finding food very near to and within clutter. As echolocation was the prime sensory mode used by M. macrophyllum for detection and localization of food, the bat might have been unable to perceive sufficient information from prey near clutter as background echoes from the water plant increasingly overlapped with echoes from food. The importance of echolocation for foraging is reflected in a stereotypic call pattern of M. macrophyllum that resembles other aerial insectivorous and trawling bats with a pronounced terminal phase (buzz) prior to capture attempts. Our findings contrast studies of other phyllostomid bats that glean prey very near or from vegetation, often using additional sensory cues, such as prey-produced noise, to find food and that lack a terminal phase in echolocation behavior. In M. macrophyllum, acoustic characteristics of its foraging habitat have shaped its sonar system more than phylogeny. PMID:24324442

  19. Effect of Codend Circumference on the Size Selection of Square-Mesh Codends in Trawl Fisheries.

    PubMed

    Sala, Antonello; Herrmann, Bent; De Carlo, Francesco; Lucchetti, Alessandro; Brčić, Jure

    2016-01-01

    It is well established that increasing mesh number in the circumference of a diamond-mesh trawl codend can reduce size selection for round fish, whereas selection for flat fish species is unaffected. This effect has also been documented in Mediterranean trawl fisheries. In contrast, no information is available with regard to the effect of increasing mesh number in the circumference of square-mesh codends on the size selection of round fish and flat fish species. A field study was devised to bridge this gap and formulate proposals aimed at improving trawl fishery management. Size selection data were collected for a round fish species, red mullet (Mullus barbatus), and two flat fish species, Mediterranean scaldfish (Arnoglossus laterna) and solenette (Buglossidium luteum). Fishing trials were conducted in the Adriatic Sea (Central Mediterranean) using three square-mesh codends that differed only in mesh number around the circumference. Results demonstrated that increasing the number of meshes from 107 to 213 reduced the 50% retention length (L50) for red mullet by 2.5 cm but did not affect size selection for the two flat fish species. In some fisheries, regulatory provisions regarding the number of meshes in the circumference should therefore be carefully considered both for diamond- and square-mesh codends. PMID:27472058

  20. Trawls and cooling-water intakes as estuarine fish sampling tools: Comparisons of catch composition, trends in relative abundance, and length selectivity

    NASA Astrophysics Data System (ADS)

    Greenwood, M. F. D.

    2008-01-01

    Fish populations in estuaries are often monitored with traditional sampling gears such as trawls. Trawling is relatively expensive and may be hindered by environmental conditions such as tides and substrates. Power station cooling-water intake screens have been effectively used as estuarine fish sampling devices for many years, but very few quantitative comparisons of intake fish-catch characteristics with samples from other collection methods have been made. Fish collected at the cooling-water intake of a large power station in the lower Forth estuary, UK, were more similar in assemblage composition to fish caught by nearby pelagic trawling than to fish caught by Agassiz (demersal) trawling, mostly because the intake and pelagic-trawl catches were largely composed of clupeids ( Sprattus sprattus and Clupea harengus). The intake catch was typified by pelagic, demersal, and benthic species, however, and was less variable than the catches made by the two trawls. Monthly trends in relative abundance correlated reasonably well between the intake and trawl samples. Fish collected at the intake tended to be significantly smaller than those collected by trawling, which was probably attributable to the intake's smaller mesh size. The study highlighted the utility of a cooling-water intake as an efficient, low-cost fish sampling device, which should be considered as an alternative to trawling as the cost of the latter increases into the future.

  1. The ‘W’ Prawn-Trawl with Emphasised Drag-Force Transfer to Its Centre Line to Reduce Overall System Drag

    PubMed Central

    Balash, Cheslav; Sterling, David; Binns, Jonathan; Thomas, Giles; Bose, Neil

    2015-01-01

    For prawn trawling systems, drag reduction is a high priority as the trawling process is energy intensive. Large benefits have occurred through the use of multiple-net rigs and thin twine in the netting. An additional positive effect of these successful twine-area reduction strategies is the reduced amount of otter board area required to spread the trawl systems, which leads to further drag reduction. The present work investigated the potential of redirecting the drag-strain within a prawn trawl away from the wings and the otter boards to the centre line of the trawl, where top and bottom tongues have been installed, with an aim to minimise the loading/size of the otter boards required to spread the trawl. In the system containing the new ‘W’ trawl, the drag redirected to the centre-line tongues is transferred forward through a connected sled and towing wires to the trawler. To establish the extent of drag redirection to the centre-line tongues and the relative drag benefits of the new trawl system, conventional and ‘W’ trawls of 3.65 m headline length were tested firstly over a range of spread ratios in the flume tank, and subsequently at optimum spread ratio in the field. The developed ‘W’ trawl effectively directed 64% of netting-drag off the wings and onto the centre tongues, which resulted in drag savings in the field of ∼20% for the associated ‘W’ trawl/otter-board/sled system compared to the traditional trawl/otter-board arrangement in a single trawl or twin rig configuration. Furthermore, based on previously published data, the new trawl when used in a twin rig system is expected to provide approximately 12% drag reduction compared to quad rig. The twin ‘W’ trawl system also has benefits over quad rig in that a reduced number of cod-end/By-catch Reduction Device units need to be installed and attended each tow. PMID:25751251

  2. A Two-Photon E1-M1 Optical Clock

    NASA Astrophysics Data System (ADS)

    Alden, Emily A.

    Innovations in precision frequency measurement advance popular technologies such as global positioning systems (GPS), permit the testing of fundamental physics constants, and have the potential to measure local variations in gravity. Driving optical transitions for frequency measurement using an E1-M1 excitation scheme in a hot mercury (Hg) vapor cell is viable and could be the basis of a portable optical frequency standard with comparable accuracy to the most precise atomic clocks in the world. This dissertation explores the fundamental physics of the new E1-M1 method of high-precision frequency measurement in an optical, atomic clock and describes the construction of a high-power E1-M1 clock laser. The value of this new scheme compared to existing optical frequency standards is the simplicity and portability of the experimental setup. Such an optical frequency standard would permit frequency measurement in far-flung locations on earth and in space. Analysis of both the E1-M1 optical transition and thermal properties of the candidate clock atoms are presented. These models allow a stability estimate of an E1-M1 optical clock and recommend experimental settings to optimize the standard. The experimental work that has been performed in pursuit of observing the E1-M1 clock transition in Hg is also discussed. An optical clock operates by making a precision frequency measurement of a laser that has been brought into resonance with a clock atom's oscillator: a high quality atomic level transition. Group II type atoms, such as Hg, have the 1S0-3P0 transition that is an ideal basis for a clock. The E1-M1 excitation is performed by driving the two-photon allowed transition 1S0-3P1-3P0. This is in contrast to the single-photon E1 transition used in other systems. Single-photon schemes must use ultracold atoms to reduce atomic motion to attain high levels of accuracy. Driving the clock transition with a pair of degenerate counter-propagating photons in an E1-M1 scheme

  3. When does fishing lead to more fish? Community consequences of bottom trawl fisheries in demersal food webs.

    PubMed

    van Denderen, P Daniel; van Kooten, Tobias; Rijnsdorp, Adriaan D

    2013-10-22

    Bottom trawls are a globally used fishing gear that physically disturb the seabed and kill non-target organisms, including those that are food for the targeted fish species. There are indications that ensuing changes to the benthic invertebrate community may increase the availability of food and promote growth and even fisheries yield of target fish species. If and how this occurs is the subject of ongoing debate, with evidence both in favour and against. We model the effects of trawling on a simple ecosystem of benthivorous fish and two food populations (benthos), susceptible and resistant to trawling. We show that the ecosystem response to trawling depends on whether the abundance of benthos is top-down or bottom-up controlled. Fishing may result in higher fish abundance, higher (maximum sustainable) yield and increased persistence of fish when the benthos which is the best-quality fish food is also more resistant to trawling. These positive effects occur in bottom-up controlled systems and systems with limited impact of fish feeding on benthos, resembling bottom-up control. Fishing leads to lower yields and fish persistence in all configurations where susceptible benthos are more profitable prey. Our results highlight the importance of mechanistic ecosystem knowledge as a requirement for successful management. PMID:24004941

  4. When does fishing lead to more fish? Community consequences of bottom trawl fisheries in demersal food webs

    PubMed Central

    van Denderen, P. Daniel; van Kooten, Tobias; Rijnsdorp, Adriaan D.

    2013-01-01

    Bottom trawls are a globally used fishing gear that physically disturb the seabed and kill non-target organisms, including those that are food for the targeted fish species. There are indications that ensuing changes to the benthic invertebrate community may increase the availability of food and promote growth and even fisheries yield of target fish species. If and how this occurs is the subject of ongoing debate, with evidence both in favour and against. We model the effects of trawling on a simple ecosystem of benthivorous fish and two food populations (benthos), susceptible and resistant to trawling. We show that the ecosystem response to trawling depends on whether the abundance of benthos is top-down or bottom-up controlled. Fishing may result in higher fish abundance, higher (maximum sustainable) yield and increased persistence of fish when the benthos which is the best-quality fish food is also more resistant to trawling. These positive effects occur in bottom-up controlled systems and systems with limited impact of fish feeding on benthos, resembling bottom-up control. Fishing leads to lower yields and fish persistence in all configurations where susceptible benthos are more profitable prey. Our results highlight the importance of mechanistic ecosystem knowledge as a requirement for successful management. PMID:24004941

  5. [Determination of stress in fish community obtained from shrimp trawl fishing in Northern Gulf of California].

    PubMed

    Herrera-Valdivia, Eloísa; López-Martínez, Juana; Vargasmachuca, Sergio Castillo

    2015-09-01

    Bottom trawling has been considered a fishing activity that affects and modifies habitats, because of its impacts in species composition and abundance, and the alteration in the structure and function of the eco-system, that generates biodiversity loss. The Northern part of the Gulf of California has been considered a mega diverse zone with high endemism, and it is of growing interest by the international scientific community. In order to assess its potential changes in the fish community components of shrimp by-catch (FAC) in this area, a total of 119 trawls from 13 fishing boats were analyzed in Puerto Peñasco, based on 14 commercial fishing trips made within 9-90 m depth from 2010-2011. A random sample of 20 kg was obtained from each trawl, and was analyzed in the laboratory for species composition. In addition to the Index of Biological Value (IVB), Shannon diversity (H'), and Pielou evenness (J'), comparative abundance-biomass curves (ABC) were also estimated. Eucinostomus dowii showed the highest IVB = 480.25; Porichthys analis showed greater relative abundance; and Pomadasys panamensis showed greater frequency of occurrence. The mean monthly values in diversity H' = 3.05 (2.72 > H' < 3.25) and J' = 0.71 (0.66 < J' >0.81) showed a tendency to decrease as the fishing season progressed. The comparative abundance-biomass curves (ABC), and the value of statistical W showed moderate stress levels in March (W= -0.022) and September (W= -0.02) 2010, and January 2011 (W= -0.042). In conclusion, the Northern Gulf of California showed a well-structured community with a degree of moderate fishing stress. PMID:26666130

  6. Retrospective analysis of Bering Sea bottom trawl surveys: regime shift and ecosystem reorganization

    NASA Astrophysics Data System (ADS)

    Conners, M. E.; Hollowed, A. B.; Brown, E.

    2002-10-01

    This paper compiles data from bottom trawl surveys using variations on a 400-mesh eastern trawl gear into a 38-year time series (1963-2000), using a robust index of median catch per unit effort (CPUE) as an indicator of regional abundance. Time series are presented for three index sites in the southeastern Bering Sea: the inner shelf in Bristol Bay, the middle shelf north of Unimak Island, and the outer shelf near the Pribilof Islands. All three sites show strong evidence of a shift in benthic biomass and community structure in the early to mid-1980s. During this period, all three sites showed substantial increases in the abundances of walleye pollock, Pacific cod, rock sole, flathead sole, cartilaginous fishes (skates) and non-crab benthic invertebrates. Species composition, especially of flatfish, differs at the three sites, but the trend for groundfish abundance to increase was consistent at all three sites. The similarity in trends both across the region and across both commercial and unexploited groups suggests to us that a complete reorganization of benthic and demersal food webs may have taken place. The timing of change in trawl catch weight is consistent with effects of the strong regime shift observed in climate indices in 1976-1977. There is little evidence of similar biological responses to subsequent, less pronounced changes in climate. Our data are also consistent with recently documented shifts in ecosystem dynamics resulting from changes in ice cover and thermal structure in the eastern Bering Sea. Our analysis indicates that there was a much higher biomass of groundfish at all three sites during 1980-2000 than in 1960-1980. This result provides evidence against the hypothesis that the overall productivity of the eastern Bering Sea has decreased. The precipitous decline of the endangered Steller sea lion in this region from 1975-1985 was concurrent with an overall increase in abundance of groundfish prey.

  7. Flexible echolocation behavior of trawling bats during approach of continuous or transient prey cues.

    PubMed

    Ubernickel, Kirstin; Tschapka, Marco; Kalko, Elisabeth K V

    2013-01-01

    Trawling bats use echolocation not only to detect and classify acoustically continuous cues originated from insects at and above water surfaces, but also to detect small water-dwelling prey items breaking the water surface for a very short time, producing only transient cues to be perceived acoustically. Generally, bats need to adjust their echolocation behavior to the specific task on hand, and because of the diversity of prey cues they use in hunting, trawling bats should be highly flexible in their echolocation behavior. We studied the adaptations in the behavior of Noctilio leporinus when approaching either a continuous cue or a transient cue that disappeared during the approach of the bat. Normally the bats reacted by dipping their feet in the water at the cue location. We found that the bats typically started to adapt their calling behavior at approximately 410 ms before prey contact in continuous cue trials, but were also able to adapt their approach behavior to stimuli onsets as short as 177 ms before contact, within a minimum reaction time of 50.9 ms in response to transient cues. In both tasks the approach phase ended between 32 and 53 ms before prey contact. Call emission always continued after the end of the approach phase until around prey contact. In some failed capture attempts, call emission did not cease at all after prey contact. Probably bats used spatial memory to dip at the original location of the transient cue after its disappearance. The duration of the pointed dips was significantly longer in transient cue trials than in continuous cue trials. Our results suggest that trawling bats possess the ability to modify their generally rather stereotyped echolocation behavior during approaches within very short reaction times depending on the sensory information available. PMID:23675352

  8. Impact of Bottom Trawling on Deep-Sea Sediment Properties along the Flanks of a Submarine Canyon

    PubMed Central

    Martín, Jacobo; Puig, Pere; Masqué, Pere; Palanques, Albert; Sánchez-Gómez, Anabel

    2014-01-01

    The offshore displacement of commercial bottom trawling has raised concerns about the impact of this destructive fishing practice on the deep seafloor, which is in general characterized by lower resilience than shallow water regions. This study focuses on the flanks of La Fonera (or Palamós) submarine canyon in the Northwestern Mediterranean, where an intensive bottom trawl fishery has been active during several decades in the 400–800 m depth range. To explore the degree of alteration of surface sediments (0–50 cm depth) caused by this industrial activity, fishing grounds and control (untrawled) sites were sampled along the canyon flanks with an interface multicorer. Sediment cores were analyzed to obtain vertical profiles of sediment grain-size, dry bulk density, organic carbon content and concentration of the radionuclide 210Pb. At control sites, surface sediments presented sedimentological characteristics typical of slope depositional systems, including a topmost unit of unconsolidated and bioturbated material overlying sediments progressively compacted with depth, with consistently high 210Pb inventories and exponential decaying profiles of 210Pb concentrations. Sediment accumulation rates at these untrawled sites ranged from 0.3 to 1.0 cm y−1. Sediment properties at most trawled sites departed from control sites and the sampled cores were characterized by denser sediments with lower 210Pb surface concentrations and inventories that indicate widespread erosion of recent sediments caused by trawling gears. Other alterations of the physical sediment properties, including thorough mixing or grain-size sorting, as well as organic carbon impoverishment, were also visible at trawled sites. This work contributes to the growing realization of the capacity of bottom trawling to alter the physical properties of surface sediments and affect the seafloor integrity over large spatial scales of the deep-sea. PMID:25111298

  9. Impact of bottom trawling on deep-sea sediment properties along the flanks of a submarine canyon.

    PubMed

    Martín, Jacobo; Puig, Pere; Masqué, Pere; Palanques, Albert; Sánchez-Gómez, Anabel

    2014-01-01

    The offshore displacement of commercial bottom trawling has raised concerns about the impact of this destructive fishing practice on the deep seafloor, which is in general characterized by lower resilience than shallow water regions. This study focuses on the flanks of La Fonera (or Palamós) submarine canyon in the Northwestern Mediterranean, where an intensive bottom trawl fishery has been active during several decades in the 400-800 m depth range. To explore the degree of alteration of surface sediments (0-50 cm depth) caused by this industrial activity, fishing grounds and control (untrawled) sites were sampled along the canyon flanks with an interface multicorer. Sediment cores were analyzed to obtain vertical profiles of sediment grain-size, dry bulk density, organic carbon content and concentration of the radionuclide 210Pb. At control sites, surface sediments presented sedimentological characteristics typical of slope depositional systems, including a topmost unit of unconsolidated and bioturbated material overlying sediments progressively compacted with depth, with consistently high 210Pb inventories and exponential decaying profiles of 210Pb concentrations. Sediment accumulation rates at these untrawled sites ranged from 0.3 to 1.0 cm y-1. Sediment properties at most trawled sites departed from control sites and the sampled cores were characterized by denser sediments with lower 210Pb surface concentrations and inventories that indicate widespread erosion of recent sediments caused by trawling gears. Other alterations of the physical sediment properties, including thorough mixing or grain-size sorting, as well as organic carbon impoverishment, were also visible at trawled sites. This work contributes to the growing realization of the capacity of bottom trawling to alter the physical properties of surface sediments and affect the seafloor integrity over large spatial scales of the deep-sea. PMID:25111298

  10. Rapid Changes on Sediment Accumulation Rates within Submarine Canyons Caused By Bottom Trawling Activities

    NASA Astrophysics Data System (ADS)

    Puig, P.; Masque, P.; Martin, J.; Paradis, S.; Juan, X.; Toro, M.; Palanques, A.

    2014-12-01

    The physical disturbance of the marine sedimentary environments by commercial bottom trawling is a matter of concern. The direct physical effects of this fishing technique include scraping and ploughing of the seabed and increases of the near-bottom water turbidity by sediment resuspension. However, the quantification of the sediment that has been resuspended by this anthropogenic activity over years and has been ultimately exported across the margin remains largely unaddressed. The analysis of sediment accumulation rates from sediment cores collected along the axes of several submarine canyons in the Catalan margin (northwestern Mediterranean) has allowed to estimate the contribution of this anthropogenic activity to the present-day sediment dynamics. 210Pb chronologies, occasionally supported by 137Cs dating, indicate a rapid increase of sediment accumulation rates since the 1970s, in coincidence with a strong impulse in the industrialization of the trawling fleets of this region. Such increase has been associated to the enhanced delivery of sediment resuspended by trawlers from the shelves and upper slope regions towards the canyon's interior, and to the rapid technical development at that time, in terms of engine power and gear size. This change has been observed in La Fonera (or Palamós) Canyon at depths greater than 1700 m, while in other canyons it is restricted to shallower regions (~1000 m in depth) closer to fishing grounds. Two sampling sites from La Fonera and Foix submarine canyons that exhibited high sediment accumulation rates (0.6-0.7 cm/y) were reoccupied several years after the first chronological analyses. These two new cores reveal a second and more rapid increase of sediment accumulation rates in both canyons occurring circa 2002 and accounting for about 2 cm/y. This second change at the beginning of the XXI century has been attributed to a preferential displacement of the trawling fleet towards slope fishing grounds surrounding submarine

  11. Polychaeta of the Kara and Pechora seas: Data of the 2012 trawl survey.

    PubMed

    Frolova, E A; Syomin, V L

    2016-07-01

    The species composition of the polychaetes derived from ichthyological and Sigsbee trawls in the Pechora and Kara seas in 2012 was studied and compared with the grab survey data of 1993-1995. The distribution of the large sabellidae, nektobenthic, and bathypelagic species that are poorly caught by a grab has been determined for the first time. Changes that were observed in the biogeographical polychaete structure in the Kara Sea (a higher proportion of the boreal species and a lower proportion of the Arctic species) may reflect a response of zoobenthos to the Arctic warming in the late 20th and early 21st centuries. PMID:27595826

  12. Benthic fish and invertebrate assemblages within the National Marine Fisheries Service US west coast triennial bottom trawl survey

    NASA Astrophysics Data System (ADS)

    Zimmermann, Mark

    2006-06-01

    This project sought to derive the ecological boundaries within a bottom trawl survey by treating benthic fish and invertebrate species as biological indicators in assemblage analyses. A secondary goal was to determine if these ecological boundaries match the strata boundaries of the bottom trawl survey. Most fishery-independent bottom trawl surveys are driven by management needs for relative biomass estimation of commercial stocks within certain strata, and the strata boundaries are often abiotic features such as political borders, capes and submarine canyons, or arbitrary depths. However, these surveys also generate a great deal of under-utilized data—such as the abundance of non-commercial benthic species and the occurrence of size-groups of commercial species—that can be used for defining ecological boundaries that are independent of the strata boundaries. For an example data set, this analysis used the National Marine Fisheries Service US west coast bottom trawl survey, which has sampled the same 610 stations in three surveys (1995, 1998, and 2001). This analysis determined the geographic extent of three biologically distinct assemblages which occurred in a total of 9 analyses across three bottom trawl surveys and across three assemblage analysis methods: hierarchical clustering, detrended correspondence analysis (DCA), and non-metric multidimensional scaling (NMS). Most trawl survey stations were consistently grouped into the same assemblage in a majority of the 9 analyses, indicating that the assemblages were stable with respect to time and to interpretation from the different assemblage analyses. Kriging on the percent agreement of the 9 analyses at each station defined boundaries of agreement (edges of assemblages), areas of disagreement (transition zones between assemblages), and clear differences from the arbitrary latitude/depth bottom trawl survey stratification scheme. The temporal and statistical consistency, and the geographical continuity of the

  13. 1-mJ, sub-5-fs carrier-envelope phase-locked pulses

    NASA Astrophysics Data System (ADS)

    Chen, X.; Canova, L.; Malvache, A.; Jullien, A.; Lopez-Martens, R.; Durfee, C.; Papadopoulos, D.; Druon, F.

    2010-04-01

    We report the routine generation of sub-5-fs laser pulses with 1-mJ energy and stable carrier-envelope phase at 1-kHz repetition rate, obtained by compressing the multi-mJ output from a phase-locked Ti:sapphire amplifier in a rare-gas-filled hollow fiber. The dual-stage amplifier features a hybrid transmission grating/chirped mirror compressor providing 2.2-mJ, 26-fs pulses at 1 kHz with standard phase deviation of 190 mrad rms. We demonstrate hour-long phase stability without feedback control of grating position or rigorous control of the laser environment, simply by using small pulse stretching factors in the amplifier, which minimize the beam pathway in the compressor. The amplifier also integrates a versatile AOPDF (acousto-optic programmable dispersive filter) for closed-loop spectral phase optimization. The various factors influencing the overall phase stability of the system are discussed in detail. Using the optimized output, 1-mJ, 4.5-fs pulses are generated by seeding the neon gas filled hollow fiber with a circularly polarized input beam. A standard phase deviation of 230 mrad after the HCF is obtained by direct f-to-2 f detection and slow-loop feedback to the oscillator locking electronics without any additional spectral broadening.

  14. Sensory challenges for trawling bats: Finding transient prey on water surfaces.

    PubMed

    Übernickel, Kirstin; Simon, Ralph; Kalko, Elisabeth K V; Tschapka, Marco

    2016-04-01

    Bats are able to identify obstacles and prey objects based exclusively on acoustic information acquired via echolocation. To assess the echo information potentially available to the trawling bat Noctilio leporinus, prey objects were ensonified with artificial bat calls and deduced echo target strengths (TS) of the reflected signals. The artificial calls consisted either of constant frequency (CF) or frequency modulated (FM) sounds. Detection distances were calculated for call intensities of N. leporinus emitted in the field and in confined space. Measurements of a transient target consisting of a brief water splash and subsequently expanding water ripples revealed that concentrically expanding water ripples can provide sufficiently loud echoes to be detected by trawling bats. Experiments with stationary targets revealed differences in TS depending on the type of signal used (CF or FM). A calculated maximum detection distance between 4.5 and 13.7 m for all measured targets indicates that prey detection in this very loud calling species occurs much earlier than suggested by estimations based on modifications in echolocation or flight behavior. PMID:27106338

  15. Comparing trawl and creel fishing for Norway lobster (Nephrops norvegicus): biological and economic considerations.

    PubMed

    Leocádio, Ana Maria; Whitmarsh, David; Castro, Margarida

    2012-01-01

    This study compares the fishing activity and landings of the trawl and creel fisheries for Norway lobster (Nephrops norvegicus (L.)) off the Portuguese coast, and evaluates the financial viability of two vessels typical of each fleet. Crustacean trawlers are part of an industrial fleet that, besides Nephrops, targets deep water shrimps. Creels are used by a multi-gear, multi-target artisanal fleet, fishing only in areas unavailable to trawlers and, when catching Nephrops, set specifically to target this species. Trawlers have in recent years contributed with 85% of the landings in weight, but only 74% in value (2005-2009 average). Despite smaller landings, the Nephrops creel fishery provides individuals of larger size and in better condition, thereby obtaining higher unit prices. Economic viability was also higher for the creel vessel, with trawling being only viable if major costs (such as labor and fuel) are covered by the revenue from other target species (e.g., the rose shrimp). At present, Nephrops populations on the South and SW coast are subject to intense fishing and to a recovery plan. The possibility of reallocation of some of the fishing effort directed at Nephrops from trawlers to creels is discussed in terms of the conservation of the resource and economic return. PMID:22848357

  16. Morphospecies and taxonomic sufficiency of benthic megafauna in scientific bottom trawl surveys

    NASA Astrophysics Data System (ADS)

    Brind'Amour, Anik; Laffargue, Pascal; Morin, Jocelyne; Vaz, Sandrine; Foveau, Aurélie; Le Bris, Hervé

    2014-01-01

    Scientific fisheries surveys routinely identify a large diversity of commercial and non-commercial benthic megainvertebrates that could provide useful information for Marine Strategy Framework Directive (MSFD) descriptors. Species is obviously the basic taxonomic level to which most ecological studies and theories refer. Identification at this level of organization is indeed always preferred over any other taxonomic level. Nevertheless, aggregation of species to higher taxonomic levels may be unavoidable sometimes, since errors of identification are known or suspected to occur in many surveys. Using analyses of taxonomic sufficiency (identification of organisms at various taxonomic resolutions) and groups of morphospecies (taxa identified easily by non-experts on the basis of evident morphological traits), this study aims to quantify the loss of ecological information incurred by partial identification of benthic megafauna in bottom trawl surveys in order to put such data to good use. The analyses were conducted on five scientific surveys representing a large range of geographical areas (from 150 km2 to 150 000 km2) and environmental conditions. Results show that genus, family and, particularly, morphospecies are good surrogates for species identification in community analyses. We suggest that bottom trawl surveys can provide reliable megafauna data that may usefully complete those obtained by grab surveys. The use of morphospecies could lead to new strategies, combining different datasets to provide indicators for MSFD descriptors (e.g. D6).

  17. 50 CFR Figure 7 to Part 679 - Location of Trawl Gear Test Areas in the GOA and the BSAI

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Location of Trawl Gear Test Areas in the GOA and the BSAI 7 Figure 7 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE OFF ALASKA Pt. 679, Fig....

  18. 50 CFR Figure 7 to Part 679 - Location of Trawl Gear Test Areas in the GOA and the BSAI

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Location of Trawl Gear Test Areas in the GOA and the BSAI 7 Figure 7 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF...

  19. 78 FR 11790 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-02-20

    ... GOA (77 FR 15194, March 14, 2012) and inseason adjustment to the final 2013 harvest specifications for Pacific cod (78 FR 267, January 3, 2013). In accordance with Sec. 679.20(d)(1)(i), the Administrator... for Pacific cod by catcher vessels (CVs) using trawl gear in the Western Regulatory Area of the...

  20. 78 FR 18528 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-27

    ... established by the final 2012 and 2013 harvest specifications for groundfish of the GOA (77 FR 15194, March 14, 2012) and inseason adjustment to the final 2013 harvest specifications for Pacific cod (78 FR 267... for Pacific cod by catcher vessels (CVs) using trawl gear in the Central Regulatory Area of the...

  1. 30 CFR 250.1741 - If I drag a trawl across a site, what requirements must I meet?

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 30 Mineral Resources 2 2011-07-01 2011-07-01 false If I drag a trawl across a site, what requirements must I meet? 250.1741 Section 250.1741 Mineral Resources BUREAU OF OCEAN ENERGY MANAGEMENT... area to be cleared as a hazard to navigation according to USCG requirements until you complete the...

  2. 50 CFR Figure 5 to Part 679 - Kodiak Island Closure Status for Vessels Using Non-pelagic Trawl Gear

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Kodiak Island Closure Status for Vessels Using Non-pelagic Trawl Gear 5 Figure 5 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE OFF ALASKA...

  3. 50 CFR Figure 5 to Part 679 - Kodiak Island Closure Status for Vessels Using Non-pelagic Trawl Gear

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Kodiak Island Closure Status for Vessels Using Non-pelagic Trawl Gear 5 Figure 5 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE OFF ALASKA...

  4. 77 FR 75966 - Control Date for Qualifying Landings History in the Central Gulf of Alaska Trawl Groundfish...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-12-26

    ...; 63 FR 52642). Over the course of the past few years, the Council has recommended amendments to the... (77 FR 42629, July 20, 2012). In June 2012, the Council recommended an FMP amendment to reduce halibut... Landings History in the Central Gulf of Alaska Trawl Groundfish Fisheries AGENCY: National Marine...

  5. Biological and physical oceanographic observations pertaining to the trawl fishery in a region of persistent coastal upwelling

    NASA Technical Reports Server (NTRS)

    Howe, J. T.; Gibson, D. B.; Evans, T. O.; Breaker, L.; Wrigley, R. C.; Broenkow, W. W.

    1981-01-01

    An upwelling episode in the Point Sal region of the central California coast is examined by using data obtained by a data buoy. The episodes was interrupted by the abrupt abatement of the strong wind which promotes coastal upwelling. The mean hourly upwelling index is calculated to be higher than the 20 year mean monthly value. During 3 days of light wind commercial bottom trawl operations were possible. Shipboard estimates of chlorophyll content in surface waters during trawling show the high concentrations that are indicative of a rich biomass of phytoplankton, a result of the upwelling episode. Satellite imagery shows the extent of the upwelling water to be of the order of 100 km offshore; the result of many upwelling episodes. Shipboard echo sounder data show the presence of various delmersal species and of zooplakton; the latter graze on the phytoplankton in the upper euphotic layers. The fish catch data are recorded according to species for 2 days of trawling, and the catch per trawl hour is recorded.

  6. Estimation of Bottom Trawl Catch Efficiency for Two Demersal Fishes, Atlantic Croaker and White Perch in Chesapeake Bay

    EPA Science Inventory

    We present an efficiency analysis of a fisheries-independent demersal trawl survey in Chesapeake Bay, the largest estuary in the United States, that is presently being used for multi-species fisheries assessment and management. The manuscript presents an in situ analysis of demer...

  7. Note: A 1-m Foucault pendulum rolling on a ball

    NASA Astrophysics Data System (ADS)

    Salva, H. R.; Benavides, R. E.; Venturino, J. A.; Cuscueta, D. J.; Ghilarducci, A. A.

    2013-10-01

    We have built a short Foucault pendulum of 1-m length. The aim of this work was to increase the sensitivity to elliptical trajectories from other longer pendula. The design was a semi-rigid pendulum that rolls over a small ball. The measurements of the movements (azimuth and elliptical trajectory) were done by an optical method. The resulting pendulum works in a medium satisfactory way due to problems of the correct choice of the mass of the bob together with the diameter of the supporting ball. It is also important to keep the rolling surface very clean.

  8. Visual surveys can reveal rather different 'pictures' of fish densities: Comparison of trawl and video camera surveys in the Rockall Bank, NE Atlantic Ocean

    NASA Astrophysics Data System (ADS)

    McIntyre, F. D.; Neat, F.; Collie, N.; Stewart, M.; Fernandes, P. G.

    2015-01-01

    Visual surveys allow non-invasive sampling of organisms in the marine environment which is of particular importance in deep-sea habitats that are vulnerable to damage caused by destructive sampling devices such as bottom trawls. To enable visual surveying at depths greater than 200 m we used a deep towed video camera system, to survey large areas around the Rockall Bank in the North East Atlantic. The area of seabed sampled was similar to that sampled by a bottom trawl, enabling samples from the towed video camera system to be compared with trawl sampling to quantitatively assess the numerical density of deep-water fish populations. The two survey methods provided different results for certain fish taxa and comparable results for others. Fish that exhibited a detectable avoidance behaviour to the towed video camera system, such as the Chimaeridae, resulted in mean density estimates that were significantly lower (121 fish/km2) than those determined by trawl sampling (839 fish/km2). On the other hand, skates and rays showed no reaction to the lights in the towed body of the camera system, and mean density estimates of these were an order of magnitude higher (64 fish/km2) than the trawl (5 fish/km2). This is probably because these fish can pass under the footrope of the trawl due to their flat body shape lying close to the seabed but are easily detected by the benign towed video camera system. For other species, such as Molva sp, estimates of mean density were comparable between the two survey methods (towed camera, 62 fish/km2; trawl, 73 fish/km2). The towed video camera system presented here can be used as an alternative benign method for providing indices of abundance for species such as ling in areas closed to trawling, or for those fish that are poorly monitored by trawl surveying in any area, such as the skates and rays.

  9. Beam-beam instability

    SciTech Connect

    Chao, A.W.

    1983-08-01

    The subject of beam-beam instability has been studied since the invention of the colliding beam storage rings. Today, with several colliding beam storage rings in operation, it is not yet fully understood and remains an outstanding problem for the storage ring designers. No doubt that good progress has been made over the years, but what we have at present is still rather primitive. It is perhaps possible to divide the beam-beam subject into two areas: one on luminosity optimization and another on the dynamics of the beam-beam interaction. The former area concerns mostly the design and operational features of a colliding beam storage ring, while the later concentrates on the experimental and theoretical aspects of the beam-beam interaction. Although both areas are of interest, our emphasis is on the second area only. In particular, we are most interested in the various possible mechanisms that cause the beam-beam instability.

  10. Deep vision: an in-trawl stereo camera makes a step forward in monitoring the pelagic community.

    PubMed

    Underwood, Melanie J; Rosen, Shale; Engås, Arill; Eriksen, Elena

    2014-01-01

    Ecosystem surveys are carried out annually in the Barents Sea by Russia and Norway to monitor the spatial distribution of ecosystem components and to study population dynamics. One component of the survey is mapping the upper pelagic zone using a trawl towed at several depths. However, the current technique with a single codend does not provide fine-scale spatial data needed to directly study species overlaps. An in-trawl camera system, Deep Vision, was mounted in front of the codend in order to acquire continuous images of all organisms passing. It was possible to identify and quantify of most young-of-the-year fish (e.g. Gadus morhua, Boreogadus saida and Reinhardtius hippoglossoides) and zooplankton, including Ctenophora, which are usually damaged in the codend. The system showed potential for measuring the length of small organisms and also recorded the vertical and horizontal positions where individuals were imaged. Young-of-the-year fish were difficult to identify when passing the camera at maximum range and to quantify during high densities. In addition, a large number of fish with damaged opercula were observed passing the Deep Vision camera during heaving; suggesting individuals had become entangled in meshes farther forward in the trawl. This indicates that unknown numbers of fish are probably lost in forward sections of the trawl and that the heaving procedure may influence the number of fish entering the codend, with implications for abundance indices and understanding population dynamics. This study suggests modifications to the Deep Vision and the trawl to increase our understanding of the population dynamics. PMID:25393121

  11. Deep Vision: An In-Trawl Stereo Camera Makes a Step Forward in Monitoring the Pelagic Community

    PubMed Central

    Underwood, Melanie J.; Rosen, Shale; Engås, Arill; Eriksen, Elena

    2014-01-01

    Ecosystem surveys are carried out annually in the Barents Sea by Russia and Norway to monitor the spatial distribution of ecosystem components and to study population dynamics. One component of the survey is mapping the upper pelagic zone using a trawl towed at several depths. However, the current technique with a single codend does not provide fine-scale spatial data needed to directly study species overlaps. An in-trawl camera system, Deep Vision, was mounted in front of the codend in order to acquire continuous images of all organisms passing. It was possible to identify and quantify of most young-of-the-year fish (e.g. Gadus morhua, Boreogadus saida and Reinhardtius hippoglossoides) and zooplankton, including Ctenophora, which are usually damaged in the codend. The system showed potential for measuring the length of small organisms and also recorded the vertical and horizontal positions where individuals were imaged. Young-of-the-year fish were difficult to identify when passing the camera at maximum range and to quantify during high densities. In addition, a large number of fish with damaged opercula were observed passing the Deep Vision camera during heaving; suggesting individuals had become entangled in meshes farther forward in the trawl. This indicates that unknown numbers of fish are probably lost in forward sections of the trawl and that the heaving procedure may influence the number of fish entering the codend, with implications for abundance indices and understanding population dynamics. This study suggests modifications to the Deep Vision and the trawl to increase our understanding of the population dynamics. PMID:25393121

  12. Characterization of an in-vacuum PILATUS 1M detector.

    PubMed

    Wernecke, Jan; Gollwitzer, Christian; Müller, Peter; Krumrey, Michael

    2014-05-01

    A dedicated in-vacuum X-ray detector based on the hybrid pixel PILATUS 1M detector has been installed at the four-crystal monochromator beamline of the PTB at the electron storage ring BESSY II in Berlin, Germany. Owing to its windowless operation, the detector can be used in the entire photon energy range of the beamline from 10 keV down to 1.75 keV for small-angle X-ray scattering (SAXS) experiments and anomalous SAXS at absorption edges of light elements. The radiometric and geometric properties of the detector such as quantum efficiency, pixel pitch and module alignment have been determined with low uncertainties. The first grazing-incidence SAXS results demonstrate the superior resolution in momentum transfer achievable at low photon energies. PMID:24763642

  13. Reaching 1 m deep on Mars: the Icebreaker drill.

    PubMed

    Zacny, K; Paulsen, G; McKay, C P; Glass, B; Davé, A; Davila, A F; Marinova, M; Mellerowicz, B; Heldmann, J; Stoker, C; Cabrol, N; Hedlund, M; Craft, J

    2013-12-01

    The future exploration of Mars will require access to the subsurface, along with acquisition of samples for scientific analysis and ground-truthing of water ice and mineral reserves for in situ resource utilization. The Icebreaker drill is an integral part of the Icebreaker mission concept to search for life in ice-rich regions on Mars. Since the mission targets Mars Special Regions as defined by the Committee on Space Research (COSPAR), the drill has to meet the appropriate cleanliness standards as requested by NASA's Planetary Protection Office. In addition, the Icebreaker mission carries life-detection instruments; and in turn, the drill and sample delivery system have to meet stringent contamination requirements to prevent false positives. This paper reports on the development and testing of the Icebreaker drill, a 1 m class rotary-percussive drill and triple redundant sample delivery system. The drill acquires subsurface samples in short, approximately 10 cm bites, which makes the sampling system robust and prevents thawing and phase changes in the target materials. Autonomous drilling, sample acquisition, and sample transfer have been successfully demonstrated in Mars analog environments in the Arctic and the Antarctic Dry Valleys, as well as in a Mars environmental chamber. In all environments, the drill has been shown to perform at the "1-1-100-100" level; that is, it drilled to 1 m depth in approximately 1 hour with less than 100 N weight on bit and approximately 100 W of power. The drilled substrate varied and included pure ice, ice-rich regolith with and without rocks and with and without 2% perchlorate, and whole rocks. The drill is currently at a Technology Readiness Level (TRL) of 5. The next-generation Icebreaker drill weighs 10 kg, which is representative of the flightlike model at TRL 5/6. PMID:24303959

  14. Common Dolphin (Delphinus delphis) Bycatch in New Zealand Commercial Trawl Fisheries

    PubMed Central

    Thompson, Finlay N.; Abraham, Edward R.; Berkenbusch, Katrin

    2013-01-01

    Marine mammals are regularly reported as bycatch in commercial and artisanal fisheries, but data are often insufficient to allow assessment of these incidental mortalities. Observer coverage of the mackerel trawl fishery in New Zealand waters between 1995 and 2011 allowed evaluation of common dolphin Delphinus delphis bycatch on the North Island west coast, where this species is the most frequently caught cetacean. Observer data were used to develop a statistical model to estimate total captures and explore covariates related to captures. A two-stage Bayesian hurdle model was used, with a logistic generalised linear model predicting whether any common dolphin captures occurred on a given tow of the net, and a zero-truncated Poisson distribution to estimate the number of dolphin captures, given that there was a capture event. Over the 16-year study period, there were 119 common dolphin captures reported on 4299 observed tows. Capture events frequently involved more than one individual, with a maximum of nine common dolphin observed caught in a single tow. There was a peak of 141 estimated common dolphin captures (95% c.i.: 56 to 276; 6.27 captures per 100 tows) in 2002–03, following the marked expansion in annual effort in this fishery to over 2000 tows. Subsequently, the number of captures fluctuated although fishing effort remained relatively high. Of the observed capture events, 60% were during trawls where the top of the net (headline) was <40 m below the surface, and the model determined that this covariate best explained common dolphin captures. Increasing headline depth by 21 m would halve the probability of a dolphin capture event on a tow. While lack of abundance data prevents assessment of the impact of these mortalities on the local common dolphin population, a clear recommendation from this study is the increasing of headline depth to reduce common dolphin captures. PMID:23717614

  15. Common dolphin (Delphinus delphis) bycatch in New Zealand commercial trawl fisheries.

    PubMed

    Thompson, Finlay N; Abraham, Edward R; Berkenbusch, Katrin

    2013-01-01

    Marine mammals are regularly reported as bycatch in commercial and artisanal fisheries, but data are often insufficient to allow assessment of these incidental mortalities. Observer coverage of the mackerel trawl fishery in New Zealand waters between 1995 and 2011 allowed evaluation of common dolphin Delphinus delphis bycatch on the North Island west coast, where this species is the most frequently caught cetacean. Observer data were used to develop a statistical model to estimate total captures and explore covariates related to captures. A two-stage Bayesian hurdle model was used, with a logistic generalised linear model predicting whether any common dolphin captures occurred on a given tow of the net, and a zero-truncated Poisson distribution to estimate the number of dolphin captures, given that there was a capture event. Over the 16-year study period, there were 119 common dolphin captures reported on 4299 observed tows. Capture events frequently involved more than one individual, with a maximum of nine common dolphin observed caught in a single tow. There was a peak of 141 estimated common dolphin captures (95% c.i.: 56 to 276; 6.27 captures per 100 tows) in 2002-03, following the marked expansion in annual effort in this fishery to over 2000 tows. Subsequently, the number of captures fluctuated although fishing effort remained relatively high. Of the observed capture events, 60% were during trawls where the top of the net (headline) was <40 m below the surface, and the model determined that this covariate best explained common dolphin captures. Increasing headline depth by 21 m would halve the probability of a dolphin capture event on a tow. While lack of abundance data prevents assessment of the impact of these mortalities on the local common dolphin population, a clear recommendation from this study is the increasing of headline depth to reduce common dolphin captures. PMID:23717614

  16. 50 CFR Table 3 (north) to Part 660... - 2010 Trip Limits for Limited Entry Trawl Gear North of 40°10′ N. Lat.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false 2010 Trip Limits for Limited Entry Trawl Gear North of 40°10â² N. Lat. 3 Table 3 (North) to Part 660, Subpart G Wildlife and Fisheries FISHERY... Limits for Limited Entry Trawl Gear North of 40°10′ N. Lat. Link to an amendment published at 75 FR...

  17. Modified otter trawl legs to reduce damage and mortality of benthic organisms in North East Atlantic fisheries (Bay of Biscay)

    NASA Astrophysics Data System (ADS)

    Guyonnet, B.; Grall, J.; Vincent, B.

    2008-07-01

    Despite a consensus about the significant damages to marine benthos and commercial fish stocks induced by mobile fishing gear, the extent and intensity of this practice have currently grown all over the world. The main problems of fisheries management are the capture and killing of juvenile and undersized fish and thus restrictions mainly concern mesh size in cod-end. However another recurrent problem and non-negligible is the by-catch of undersize commercial fish and of non-target species. Hence, regulations to reduce such by-catch have formed a part of fisheries management techniques since the early 20th century. As a consequence, successful developments and technical modification have been used to reduce capture of undersized fish and discards (i.e. mesh size, separator panels, and sorting grids) in the last decades. Technical modification concerning reduction of damage and mortality to benthic communities are less documented. Most of the tentative to replace tickler chain, panels or legs by other systems have failed, while results showed a decrease in non-target catch, and a decrease in commercial catch was observed. This paper presents fishing experiments with modified otter trawl aimed at reducing discard rates and direct mortality of benthic infauna and epifauna without affecting the level of landings (i.e. a comparison of environmental effects caused by a conventional otter trawl compared to a modified otter trawl with enlighten experimental legs). Catch composition, by-catch and short-term effects to macro- and megafauna communities of both fishing gear (conventional and modified) were investigated. Results show that no differences for commercial catch biomass or for benthic communities' structure were observed. Moreover, by-catch analysis showed no difference while significant higher damage and direct mortality were observed for target and non-target species caught by the normal otter trawl compared to those caught by the modified one. Consequently

  18. Impact of Natural (Storm) and Anthropogenic (Trawl) Resuspension the Sediment Transport on the Gulf of Lion's Shelf (NW Mediterranean)

    NASA Astrophysics Data System (ADS)

    Ferre, B.; Durrieu de Madron, X.; Estournel, C.; Ulses, C.; Le Corre, G.

    2006-12-01

    Modern sediment deposits on continental margins form a vast reservoir of particulate matter that is regularly affected by resuspension processes. On shelves with strong fishing activity, resuspension by bottom trawling processes can modify the scale of natural disturbance by waves and currents. Recent field data shows that the impact of bottom trawls on the resuspension of the fine sediments per unit surface is comparable with that of the largest storms. We assessed the impact of both natural and anthropogenic processes on the dispersal of river-borne particles and shelf sediments on the Gulf of Lion's Shelf. Realistic numerical simulations of resuspension and transport forced by currents and waves or by a fleet of bottom trawlers were developed. Simulations were conducted for a 16-month period to characterize the seasonal variability. The sediment dynamics takes into account bed armoring, ripple geometry and the cohesive and non-cohesive characteristics of the sediment. Essential but uncertain parameters (clay content, erosion fluxes and critical shear stress for cohesive sediment) were set with existing data. Resuspension by waves and currents is controlled by the shear stress, whereas resuspension by the bottom trawler fleet is controlled by its density and distribution. Natural resuspension by waves and currents mostly occurs during short winter episodes, and is concentrated on the inner-shelf. Trawling-induced resuspension, in contrast, occurs regularly throughout the year and is concentrated on the outer shelf. The total annual net resuspension by trawls (8×106 T y-1 is four orders of magnitude lower than the resuspension induced by waves and currents (4×1010 T y-1. However, because trawled regions are located on the outer shelf, closer to the continental slope, export of fine sediment resuspended by trawls (0.6×106 T y-1 is only one order of magnitude lower than export associated with natural resuspension (8×106 T y-1. A simulation combining both

  19. Design Concept for the Retrofit KAO 1m Robotic Telescope

    NASA Astrophysics Data System (ADS)

    Han, Won-Yong; Mack, Peter; Park, Jang-Hyun; Jin, Ho; Lee, Woo-Baik; Lee, Chung-Uk

    2000-12-01

    Korea Astronomy Observatory (KAO) is working to retrofit its 1m robotic telescope in collaboration with a company (ACE, Astronomical Consultants & Equipment). The telescope system is being totally refurbished to make a fully automatic telescope which can operate in both interactive and fully autonomous robotic modes. Progress has been made in design and manufacturing of the telescope mount, mechanics, and optical performance system tests are being made for re-configured primary and secondary mirrors. The optical system is designed to collect 80% incident light within 0.5 arcsec with f/7.5 Ritchey-Chretien design. The telescope mount is an equatorial fork with a friction drive system. The design allows fully programmable tracking speeds with typical range of 15 arcsec/sec with accuracy of +/-5 arcsec/hour. The mount system has integral pointing model software to correct for refraction, and all mechanical errors and misalignments. The pointing model will permit positioning to better than 30 arcsec RMS within 75o from zenith and 45 arcsec RMS elsewhere on the sky. The software is designed for interactive, remote and robotic modes of operation. In interactive and remote mode the user can manually enter coordinates or retrieve them from a computer file. In robotic mode the telescope controller downloads the coordinates in the order determined by the scheduler. The telescope will be equipped with a CCD camera and will be accessible via the internet.

  20. Development of a 1-m Robotic Telescope System

    NASA Astrophysics Data System (ADS)

    Han, Wonyong; Mack, Peter; Lee, Chung-Uk; Park, Jang-Hyun; Jin, Ho; Kim, Seung-Lee; Kim, Ho-Il; Yuk, In-Soo; Lee, Woo-Baik; Bradstreet, Matthew

    2005-10-01

    Korea Astronomy & Space Science Institute (KASI) has installed a 1-m robotic telescope at Mt. Lemmon, AZ, in collaboration with a company, Astronomical Consultants & Equipment, Inc (ACE). The telescope system is totally designed to make fully robotic observations, and can be operated in both interactive and unattended robotic modes. The telescope is newly designed and manufactured regarding both mechanical and optical parts. The optical system is designed to collect 80% of the incident light within 0.''5 with an f/7.5 Ritchey-Chretien design. The telescope mount is an equatorial fork with a friction drive system, and it allows fully programmable tracking speeds with a typical range of 15'' s-1 and an accuracy of ±5''hr-1. The mount system includes an integral pointing model to correct for mechanical errors and misalignments, and an auto-guide unit is also available. To gather environmental information a weather station and an all sky camera are installed at the site. In this paper we introduce the system design and the performance of the mechanical and optical quality of the telescope system based on the results of test observations using some variable stars.

  1. Modeling the impacts of bottom trawling and the subsequent recovery rates of sponges and corals in the Aleutian Islands, Alaska

    NASA Astrophysics Data System (ADS)

    Rooper, Christopher N.; Wilkins, Mark E.; Rose, Craig S.; Coon, Catherine

    2011-11-01

    The abundance of some marine fish species are correlated to the abundance of habitat-forming benthic organisms such as sponges and corals. A concern for fisheries management agencies is the recovery of these benthic invertebrates from removal or mortality from bottom trawling and other commercial fisheries activities. Using a logistic model, observations of available substrate and data from bottom trawl surveys of the Aleutian Islands, Alaska, we estimated recovery rates of sponges and corals following removal. The model predicted the observed sponge and coral catch in bottom trawl surveys relatively accurately ( R2=0.38 and 0.46). For sponges, the results show that intrinsic growth rates were slow ( r=0.107 yr -1). Results show that intrinsic growth rates of corals were also slow ( r=0.062 yr -1). The best models for corals and sponges were models that did not include the impacts of commercial fishing removals. Subsequent recovery times for both taxa were also predicted to be slow. Mortality of 67% of the initial sponge biomass would recover to 80% of the original biomass after 20 years, while mortality of 67% of the coral biomass would recover to 80% of the original biomass after 34 years. The modeled recovery times were consistent with previous studies in estimating that recovery times were of the order of decades, however improved data from directed studies would no doubt improve parameter estimates and reduce the uncertainty in the model results. Given their role as a major ecosystem component and potential habitat for marine fish, damage and removal of sponges and corals must be considered when estimating the impacts of commercial bottom trawling on the seafloor.

  2. Evaluation of New Zealand’s High-Seas Bottom Trawl Closures Using Predictive Habitat Models and Quantitative Risk Assessment

    PubMed Central

    Penney, Andrew J.; Guinotte, John M.

    2013-01-01

    United Nations General Assembly Resolution 61/105 on sustainable fisheries (UNGA 2007) establishes three difficult questions for participants in high-seas bottom fisheries to answer: 1) Where are vulnerable marine systems (VMEs) likely to occur?; 2) What is the likelihood of fisheries interaction with these VMEs?; and 3) What might qualify as adequate conservation and management measures to prevent significant adverse impacts? This paper develops an approach to answering these questions for bottom trawling activities in the Convention Area of the South Pacific Regional Fisheries Management Organisation (SPRFMO) within a quantitative risk assessment and cost : benefit analysis framework. The predicted distribution of deep-sea corals from habitat suitability models is used to answer the first question. Distribution of historical bottom trawl effort is used to answer the second, with estimates of seabed areas swept by bottom trawlers being used to develop discounting factors for reduced biodiversity in previously fished areas. These are used in a quantitative ecological risk assessment approach to guide spatial protection planning to address the third question. The coral VME likelihood (average, discounted, predicted coral habitat suitability) of existing spatial closures implemented by New Zealand within the SPRFMO area is evaluated. Historical catch is used as a measure of cost to industry in a cost : benefit analysis of alternative spatial closure scenarios. Results indicate that current closures within the New Zealand SPRFMO area bottom trawl footprint are suboptimal for protection of VMEs. Examples of alternative trawl closure scenarios are provided to illustrate how the approach could be used to optimise protection of VMEs under chosen management objectives, balancing protection of VMEs against economic loss to commercial fishers from closure of historically fished areas. PMID:24358162

  3. Evaluation of New Zealand's high-seas bottom trawl closures using predictive habitat models and quantitative risk assessment.

    PubMed

    Penney, Andrew J; Guinotte, John M

    2013-01-01

    United Nations General Assembly Resolution 61/105 on sustainable fisheries (UNGA 2007) establishes three difficult questions for participants in high-seas bottom fisheries to answer: 1) Where are vulnerable marine systems (VMEs) likely to occur?; 2) What is the likelihood of fisheries interaction with these VMEs?; and 3) What might qualify as adequate conservation and management measures to prevent significant adverse impacts? This paper develops an approach to answering these questions for bottom trawling activities in the Convention Area of the South Pacific Regional Fisheries Management Organisation (SPRFMO) within a quantitative risk assessment and cost : benefit analysis framework. The predicted distribution of deep-sea corals from habitat suitability models is used to answer the first question. Distribution of historical bottom trawl effort is used to answer the second, with estimates of seabed areas swept by bottom trawlers being used to develop discounting factors for reduced biodiversity in previously fished areas. These are used in a quantitative ecological risk assessment approach to guide spatial protection planning to address the third question. The coral VME likelihood (average, discounted, predicted coral habitat suitability) of existing spatial closures implemented by New Zealand within the SPRFMO area is evaluated. Historical catch is used as a measure of cost to industry in a cost : benefit analysis of alternative spatial closure scenarios. Results indicate that current closures within the New Zealand SPRFMO area bottom trawl footprint are suboptimal for protection of VMEs. Examples of alternative trawl closure scenarios are provided to illustrate how the approach could be used to optimise protection of VMEs under chosen management objectives, balancing protection of VMEs against economic loss to commercial fishers from closure of historically fished areas. PMID:24358162

  4. Effects of Modified Handling on the Physiological Stress of Trawled-and-Discarded Yellowfin Bream (Acanthopagrus australis)

    PubMed Central

    Millar, Russell Brian

    2015-01-01

    Modified handling is often claimed to reduce (sub-)lethal impacts among organisms caught-and-released in fisheries. Improving welfare of discarded fish warrants investigation, when their survival is of both economic and ecological importance. In this study, juvenile yellowfin bream (Acanthopagrus australis) were trawled in an Australian penaeid fishery and then discarded after on-board sorting in either dry or water-filled (modified) trays and with delays in starting sorting of either 2 or 15 mins. Blood plasma cortisol, glucose and potassium were sampled immediately from some yellowfin bream, while others were placed into cages (with controls) and sampled after five days. Irrespective of their on-board handling, all trawled fish incurred a relatively high acute stress response (i.e. an increase in Mean ± SE cortisol from a baseline of <4 to 122.0 ± 14.9 ng/mL) that was mostly attributed to the trawling process, and exacerbated by variation in key parameters (low salinity, changes in water temperature and the presence of jellyfish Catostylus mosaicus in catches). When C. mosaicus was present, the potassium concentrations of fish sampled immediately after sorting were significantly elevated, possibly due to nematocyst contact and subsequent inhibition of ion pumps or cytolysis. Stress also increased during handling in response to warmer air temperatures and longer exposure. While most fish had substantially recovered by 120 hours after discarding, deploying selective trawls (to reduce jellyfish) for short periods and then quickly sorting catches in water would benefit discard welfare. PMID:26098900

  5. Identification and evaluation of shark bycatch in Georgia’s commercial shrimp trawl fishery with implications for management

    USGS Publications Warehouse

    Belcher, C.N.; Jennings, Cecil A.

    2011-01-01

    Many US states have recreational and commercial fisheries that occur in nursery areas occupied by subadult sharks and can potentially affect their survival. Georgia is one of few US states without a directed commercial shark fishery, but the state has a large, nearshore penaeid shrimp trawl fishery in which small sharks occur as bycatch. During our 1995-1998 investigation of bycatch in fishery-dependent sampling events, 34% of 127 trawls contained sharks. This bycatch totalled 217 individuals from six species, with Atlantic sharpnose shark, Rhizoprionodon terraenovae (Richardson), the most common and finetooth shark, Carcharhinus isodon (Müller & Henle) and spinner shark, Carcharhinus brevipinna (Müller & Henle), the least common. The highest catch rates for sharks occurred during June and July and coincided with the peak months of the pupping season for many species. Trawl tow speed and tow time did not significantly influence catch rates for shark species. Gear configurations [net type, turtle excluder device (TED), bycatch reduction device] affected catch rates for shark species. Results of this study indicate gear restrictions, a delayed season opening, or reduced bar spacing on TEDs may reduce shark bycatch in this fishery.

  6. Inferring fish escape behaviour in trawls based on catch comparison data: model development and evaluation based on data from Skagerrak, Denmark.

    PubMed

    Krag, Ludvig Ahm; Herrmann, Bent; Karlsen, Junita Diana

    2014-01-01

    During the fishing process, fish react to a trawl with a series of behaviours that often are species and size specific. Thus, a thorough understanding of fish behaviour in relation to fishing gear and a scientific understanding of the ability of different gear designs to utilize or stimulate various behavioural patterns during the catching process are essential for developing more efficient, selective, and environmentally friendly trawls. Although many behavioural studies using optical and acoustic observation systems have been conducted, harsh observation conditions on the fishing grounds often hamper the ability to directly observe fish behaviour in relation to fishing gear. As an alternative to optical and acoustic methods, we developed and applied a new mathematical model to catch data to extract detailed and quantitative information about species- and size-dependent escape behaviour in towed fishing gear such as trawls. We used catch comparison data collected with a twin trawl setup; the only difference between the two trawls was that a 12 m long upper section was replaced with 800 mm diamond meshes in one of them. We investigated the length-based escape behaviour of cod (Gadus morhua), haddock (Melanogrammus aeglefinus), saithe (Pollachius virens), witch flounder (Glyptocephalus cynoglossus), and lemon sole (Microstomus kitt) and quantified the extent to which behavioural responses set limits for the large mesh panel's selective efficiency. Around 85% of saithe, 80% of haddock, 44% of witch flounder, 55% of lemon sole, and 55% of cod (below 68 cm) contacted the large mesh panel and escaped. We also demonstrated the need to account for potential selectivity in the trawl body, as it can bias the assessment of length-based escape behaviour. Our indirect assessment of fish behaviour was in agreement with the direct observations made for the same species in a similar section of the trawl body reported in the literature. PMID:24586403

  7. Inferring Fish Escape Behaviour in Trawls Based on Catch Comparison Data: Model Development and Evaluation Based on Data from Skagerrak, Denmark

    PubMed Central

    Karlsen, Junita Diana

    2014-01-01

    During the fishing process, fish react to a trawl with a series of behaviours that often are species and size specific. Thus, a thorough understanding of fish behaviour in relation to fishing gear and a scientific understanding of the ability of different gear designs to utilize or stimulate various behavioural patterns during the catching process are essential for developing more efficient, selective, and environmentally friendly trawls. Although many behavioural studies using optical and acoustic observation systems have been conducted, harsh observation conditions on the fishing grounds often hamper the ability to directly observe fish behaviour in relation to fishing gear. As an alternative to optical and acoustic methods, we developed and applied a new mathematical model to catch data to extract detailed and quantitative information about species- and size-dependent escape behaviour in towed fishing gear such as trawls. We used catch comparison data collected with a twin trawl setup; the only difference between the two trawls was that a 12 m long upper section was replaced with 800 mm diamond meshes in one of them. We investigated the length-based escape behaviour of cod (Gadus morhua), haddock (Melanogrammus aeglefinus), saithe (Pollachius virens), witch flounder (Glyptocephalus cynoglossus), and lemon sole (Microstomus kitt) and quantified the extent to which behavioural responses set limits for the large mesh panel’s selective efficiency. Around 85% of saithe, 80% of haddock, 44% of witch flounder, 55% of lemon sole, and 55% of cod (below 68 cm) contacted the large mesh panel and escaped. We also demonstrated the need to account for potential selectivity in the trawl body, as it can bias the assessment of length-based escape behaviour. Our indirect assessment of fish behaviour was in agreement with the direct observations made for the same species in a similar section of the trawl body reported in the literature. PMID:24586403

  8. Latitudinal trends and temporal shifts in the catch composition of bottom trawls conducted on the eastern Bering Sea shelf

    NASA Astrophysics Data System (ADS)

    Stevenson, Duane E.; Lauth, Robert R.

    2012-06-01

    Latitudinal species diversity gradients are well known in both terrestrial and aquatic ecosystems throughout the world. However, trends in relative abundance and other shifts in community structure with latitude, which can be more sensitive to environmental shifts such as climate change, have received less attention. Here we investigate latitudinal trends in the seafloor community of the eastern Bering Sea using catches of fishes and epibenthic invertebrates in bottom trawl surveys conducted from 1982 to 2010. Our results indicate that the overall biomass of the epibenthic community declines with increasing latitude in the eastern Bering Sea. This latitudinal trend is primarily driven by declining fish catches in the northern Bering Sea, which in turn reflects changes in the structure of the fish community. The fish fauna in northern latitudes is increasingly dominated by gadids, though the species composition of the gadid fauna also changes with latitude, with smaller species becoming more common in the north. The biomass of the invertebrate megafauna remains relatively consistent throughout the eastern Bering Sea, but invertebrates make up a larger proportion of the catch in bottom trawls conducted at higher latitudes. The epibenthic invertebrate megafauna in the eastern Bering Sea is composed primarily of sea stars (Asteriidae) and oregoniid crabs (Chionoecetes and Hyas), though no clear latitudinal trends in the invertebrate community are evident. Limited trawl data from the eastern Chukchi Sea indicate that the fish community farther north is even more heavily dominated by gadids, and the epibenthic invertebrate community is dominated by asteriid sea stars. Temperature data from bottom trawl surveys in the southeastern Bering Sea over the past decade indicate that there was a distinct temperature shift around 2005, and the relatively warm years of 2001-2005 were followed by five relatively cold years. This shift in the summer temperature regime of the Bering

  9. Discarding of plaice (Pleuronectes platessa) in the Danish North Sea trawl fishery

    NASA Astrophysics Data System (ADS)

    Madsen, Niels; Feekings, Jordan; Lewy, Peter

    2013-01-01

    Plaice (Pleuronectes platessa) plays an important role in the North Sea benthic ecosystem and is by weight the most important commercial flatfish species in the North Sea demersal fishery. There is a high discarding of plaice in the active demersal fisheries in the North Sea. The change in fisheries management towards a more ecosystem based approach, together with a greater focus on sustainability, has caused a severe need for action. Subsequently, the European Commission is preparing regulations to reduce or even ban discards. The trawl fisheries are commercially the most important Danish fishery targeting plaice. Here we analyse discard data collected onboard Danish vessels in the period from 1998 to 2008. We describe the general patterns in these data by dividing them into three mesh size categories: 80-99 mm, 100-119 mm and ≥ 120 mm to reflect implemented technical measures of relevance. We analyse the landed and discarded portions in these mesh size categories and link the discarding to the minimum landing size. We employed a GAM model to assess how discarding of plaice below the minimum landing size is connected to relevant factors that could be of relevance from a management perspective. We identified a statistical significant effect of mesh size category and area. We discuss the results in relation to potential mitigation measures to be implemented in future fisheries management strategies.

  10. 200W average power 1mJ pulse energy from spectrally combined pulsed sub-5 ns fiber laser source

    NASA Astrophysics Data System (ADS)

    Schmidt, O.; Ortac, B.; Limpert, J.; Tünnermann, A.; Andersen, Thomas V.

    2009-02-01

    In this contribution, we report on spectral combination of four sub-5ns pulsed fiber amplifier systems with an average output power of 200W at 200kHz repetition rate resulting in 1mJ of pulse energy. A dielectric reflection grating is used to combine four individual beams to one output possessing a measured M2 value of 1.3 and 1.8, respectively, independent of power level. Extraction of higher pulse energies and peak powers will be discussed.

  11. Beam rotation and shear in a large electron beam diode

    SciTech Connect

    Mansfield, C.R.; Oona, H.; Shurter, R.P.

    1990-01-01

    The time averaged electron beam current distribution of one of the electron guns of the Large Aperture Module (LAM) of the Aurora laser was measured as part of a larger set of experiments designed to study the electron beam transport to and energy deposition in the LAM laser chamber. The LAM laser chamber has a 1-m {times} 1-m aperture and is pumped from two sides along a 2-m length. A 10 ga. stainless steel sheet was placed inside the laser chamber and served multiple purposes. First, it was used to convert high energy electrons into X-rays in order to make radiograms of the electron beam. Second, the sheet was used as a Faraday cup to measure the total beam current. Third, individual Faraday cups were mounted on the plate to sample the time history of the electron beam at various positions. Each of the LAM electron gun diodes produces a beam of 750 kV electrons with a total current of about 500 kA which is relatively uniform over the cathode area of 1 m {times} 2 m. An applied magnetic field of about 1300 Gauss is used to prevent pinch of the beam during beam transport.

  12. Increasing sediment accumulation rates in La Fonera (Palamós) submarine canyon axis and their relationship with bottom trawling activities

    NASA Astrophysics Data System (ADS)

    Puig, P.; Martín, J.; Masqué, P.; Palanques, A.

    2015-10-01

    Previous studies conducted in La Fonera (Palamós) submarine canyon (NW Mediterranean) found that trawling activities along the canyon flanks cause resuspension and transport of sediments toward the canyon axis. 210Pb chronology supported by 137Cs dating applied to a sediment core collected at 1750 m in 2002 suggested a doubling of the sediment accumulation rate since the 1970s, coincident with the rapid industrialization of the local trawling fleet. The same canyon area has been revisited a decade later, and new data are consistent with a sedimentary regime shift during the 1970s and also suggest that the accumulation rate during the last decade could be greater than expected, approaching ~2.4 cm yr-1 (compared to ~0.25 cm yr-1 pre-1970s). These results support the hypothesis that commercial bottom trawling can substantially affect sediment dynamics and budgets on continental margins, eventually initiating the formation of anthropogenic depocenters in submarine canyon environments.

  13. Using life-history information to assess potential effects of shrimp trawling on small fishes.

    PubMed

    Foster, S J; Vincent, A C J

    2010-06-01

    The current study presents information on size distributions, size at recruitment to the fishery, size at maturity and patterns of reproduction for several small benthic fishes caught as by-catch in the southern Gulf of California (Mexico) shrimp trawl fishery: sand perch Diplectrum spp., lumptail searobin Prionotus stephanophrys, bigscale goatfish Pseudupeneus grandisquamis and silver stardrum Stellifer illecebrosus. Pseudupeneus grandisquamis, P. stephanophrys and S. illecebrosus populations were all sexually dimorphic in size. Total-length (L(T))-based analyses did not provide reliable information on survival and growth. The majority of sampled P. grandisquamis and S. illecebrosus were caught before reproductive maturity, whereas the majority of Diplectrum spp. and almost all P. stephanophrys were mature when caught. L(T) at 50% gear retention (L(Tc), mm) v. 50% maturity (L(Tm), mm): Diplectrum spp. 124.53 v. 131.43; P. grandisquamis 90.98 v. 135.20; S. illecebrosus 82.55 v. 137.30. L(Tc) for P. stephanophrys was 104.73, but L(Tm) could not be modelled for this species as almost all captured individuals were mature. Diplectrum spp., P. grandisquamis and S. illecebrosus were indeterminate spawners, whereas P. stephanophrys appeared to be a determinate spawner. Sex ratios were equal for each of the gonochoristic species. In general, the gonado-somatic index (I(G)) increased with increasing L(T) for all except P. stephanophrys, where I(G) decreased with increasing L(T) for both males and females. Mature individuals of all taxa were found throughout the sampling period (September to March), and I(G) increased with sample day for all except females of P. grandisquamis. The current data suggest the potential for fishery effects on sampled populations of P. grandisquamis and S. illecebrosus. PMID:20557601

  14. Organic biomarkers in deep-sea regions affected by bottom trawling: pigments, fatty acids, amino acids and carbohydrates in surface sediments from the La Fonera (Palamós) Canyon, NW Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Sañé, E.; Martín, J.; Puig, P.; Palanques, A.

    2012-12-01

    Deep-sea ecosystems are in general adapted to a limited variability of physical conditions, resulting in high vulnerability and slow recovery rates from anthropogenic perturbations such as bottom trawling. Commercial trawling is the most recurrent and pervasive of human impacts on the deep-sea floor, but studies on its consequences on the biogeochemistry of deep-sea sediments are still scarce. Pigments, fatty acids, amino acids and carbohydrates were analyzed in sediments from the flanks of the La Fonera (Palamós) submarine canyon (NW Mediterranean Sea), where a commercial bottom trawling fishery has been active for more than 70 yr. More specifically, we investigated how trawling-induced sediment reworking affects the quality of sedimentary organic matter which reaches the seafloor and accumulates in the sediment column, which is fundamental for the development of benthic communities. Sediment samples were collected during two oceanographic cruises in spring and autumn 2011. The sampled sites included trawl fishing grounds as well as pristine (control) areas. We report that bottom trawling in the flanks of the La Fonera Canyon has caused an alteration of the quality of the organic matter accumulated in the upper 5 cm of the seafloor. The use of a wide pool of biochemical tracers characterized by different reactivity to degradation allowed us to discriminate the long-term effects of trawled-induced sediment reworking from the natural variability caused by the seasonal cycle of production and sinking of biogenic particles. Differences between untrawled and trawled areas were evidenced by labile amino acids, while differences between spring and autumn samples were detected only by the more labile indicators chlorophyll a and mono-unsaturated fatty acids. These results suggest that changes in the biochemical composition of the sedimentary organic matter caused by bottom trawling can be more relevant than those associated with natural seasonality and pose serious

  15. Organic biomarkers in deep-sea regions affected by bottom trawling: pigments, fatty acids, amino acids and carbohydrates in surface sediments from the La Fonera (Palamós) Canyon, NW Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Sañé, E.; Martín, J.; Puig, P.; Palanques, A.

    2013-12-01

    Deep-sea ecosystems are in general adapted to a limited variability of physical conditions, resulting in high vulnerability and slow recovery rates from anthropogenic perturbations such as bottom trawling. Commercial trawling is the most recurrent and pervasive of human impacts on the deep-sea floor, but studies on its consequences on the biogeochemistry of deep-sea sediments are still scarce. Pigments, fatty acids, amino acids and carbohydrates were analysed in sediments from the flanks of the La Fonera (Palamós) submarine canyon (NW Mediterranean Sea), where a commercial bottom trawling fishery has been active for more than 70 yr. More specifically, we investigated how trawling-induced sediment reworking affects the quality of sedimentary organic matter which reaches the seafloor and accumulates in the sediment column, which is fundamental for the development of benthic communities. Sediment samples were collected during two oceanographic cruises in spring and autumn 2011. The sampled sites included trawl fishing grounds as well as pristine (control) areas. We report that bottom trawling in the flanks of the La Fonera Canyon has caused an alteration of the quality of the organic matter accumulated in the upper 5 cm of the seafloor. The use of a wide pool of biochemical tracers characterized by different reactivity to degradation allowed for us to discriminate the long-term effects of trawl-induced sediment reworking from the natural variability caused by the seasonal cycle of production and sinking of biogenic particles. Differences between untrawled and trawled areas were evidenced by labile amino acids, while differences between spring and autumn samples were detected only by the more labile indicators chlorophyll a and monounsaturated fatty acids. These results suggest that changes in the biochemical composition of the sedimentary organic matter caused by bottom trawling can be more relevant than those associated with natural seasonality and pose serious

  16. Nucleolin mediates microRNA-directed CSF-1 mRNA deadenylation but increases translation of CSF-1 mRNA.

    PubMed

    Woo, Ho-Hyung; Baker, Terri; Laszlo, Csaba; Chambers, Setsuko K

    2013-06-01

    CSF-1 mRNA 3'UTR contains multiple unique motifs, including a common microRNA (miRNA) target in close proximity to a noncanonical G-quadruplex and AU-rich elements (AREs). Using a luciferase reporter system fused to CSF-1 mRNA 3'UTR, disruption of the miRNA target region, G-quadruplex, and AREs together dramatically increased reporter RNA levels, suggesting important roles for these cis-acting regulatory elements in the down-regulation of CSF-1 mRNA. We find that nucleolin, which binds both G-quadruplex and AREs, enhances deadenylation of CSF-1 mRNA, promoting CSF-1 mRNA decay, while having the capacity to increase translation of CSF-1 mRNA. Through interaction with the CSF-1 3'UTR miRNA common target, we find that miR-130a and miR-301a inhibit CSF-1 expression by enhancing mRNA decay. Silencing of nucleolin prevents the miRNA-directed mRNA decay, indicating a requirement for nucleolin in miRNA activity on CSF-1 mRNA. Downstream effects followed by miR-130a and miR-301a inhibition of directed cellular motility of ovarian cancer cells were found to be dependent on nucleolin. The paradoxical effects of nucleolin on miRNA-directed CSF-1 mRNA deadenylation and on translational activation were explored further. The nucleolin protein contains four acidic stretches, four RNA recognition motifs (RRMs), and nine RGG repeats. All three domains in nucleolin regulate CSF-1 mRNA and protein levels. RRMs increase CSF-1 mRNA, whereas the acidic and RGG domains decrease CSF-1 protein levels. This suggests that nucleolin has the capacity to differentially regulate both CSF-1 RNA and protein levels. Our finding that nucleolin interacts with Ago2 indirectly via RNA and with poly(A)-binding protein C (PABPC) directly suggests a nucleolin-Ago2-PABPC complex formation on mRNA. This complex is in keeping with our suggestion that nucleolin may work with PABPC as a double-edged sword on both mRNA deadenylation and translational activation. Our findings underscore the complexity of

  17. Focused ion beam system

    DOEpatents

    Leung, K.; Gough, R.A.; Ji, Q.; Lee, Y.Y.

    1999-08-31

    A focused ion beam (FIB) system produces a final beam spot size down to 0.1 {mu}m or less and an ion beam output current on the order of microamps. The FIB system increases ion source brightness by properly configuring the first (plasma) and second (extraction) electrodes. The first electrode is configured to have a high aperture diameter to electrode thickness aspect ratio. Additional accelerator and focusing electrodes are used to produce the final beam. As few as five electrodes can be used, providing a very compact FIB system with a length down to only 20 mm. Multibeamlet arrangements with a single ion source can be produced to increase throughput. The FIB system can be used for nanolithography and doping applications for fabrication of semiconductor devices with minimum feature sizes of 0.1 m or less. 13 figs.

  18. Impact of natural (waves and currents) and anthropogenic (trawl) resuspension on the export of particulate matter to the open ocean: Application to the Gulf of Lion (NW Mediterranean)

    NASA Astrophysics Data System (ADS)

    Ferré, B.; Durrieu de Madron, X.; Estournel, C.; Ulses, C.; Le Corre, G.

    2008-08-01

    Modern sediment deposits on continental margins form a vast reservoir of particulate matter that is regularly affected by resuspension processes. Resuspension by bottom trawling on shelves with strong fishing activity can modify the scale of natural disturbance by waves and currents. Recent field data show that the impact of bottom trawls on fine sediment resuspension per unit surface is comparable with that of the largest storms. We assessed the impact of both natural and anthropogenic processes on the dispersal of riverborne particles and shelf sediments on the Gulf of Lion shelf. We performed realistic numerical simulations of resuspension and transport forced by currents and waves or by a fleet of bottom trawlers. Simulations were conducted for a 16-month period (January 1998-April 1999) to characterise the seasonal variability. The sediment dynamics takes into account bed armoring, ripple geometry and the cohesive and non-cohesive characteristics of the sediments. Essential but uncertain parameters (clay content, erosion fluxes and critical shear stress for cohesive sediment) were set with existing data. Resuspension by waves and currents was controlled by shear stress, whereas resuspension by trawls was controlled by density and distribution of the bottom trawler fleet. Natural resuspension by waves and currents mostly occurred during short seasonal episodes, and was concentrated on the inner shelf. Trawling-induced resuspension, in contrast, occurred regularly throughout the year and was concentrated on the outer shelf. The total annual erosion by trawls (5.6×10 6 t y -1, t for metric tonnes) was four orders of magnitude lower than the erosion induced by waves and currents (35.3×10 9 t y -1). However the net resuspension (erosion/deposition budget) for trawling (0.4×10 6 t y -1) was only one order of magnitude lower than that for waves and currents (9.2×10 6 t y -1). Off-shelf export concerned the finest fraction of the sediment (clays and fine silts

  19. Recent experimental results from the HL-1M tokamak and progress in the HL-2A project

    NASA Astrophysics Data System (ADS)

    Liu, Y.; Yan, J. C.; Zhou, C. P.; Ding, X. T.; Wang, S. J.; Wang, E. Y.; Yao, L. H.; Mao, W. C.; Pan, C. H.; HL-1M Team; HL-2A Team

    2004-02-01

    Recent experimental results from the HL-1M tokamak and progress in the HL-2A project are presented in this paper. In HL-1M, strong fishbone instability was observed during off-axis electron cyclotron resonance heating (ECRH). This is the first observation of fishbone instability purely driven by energetic electrons produced by ECRH. The molecular beam injection (MBI) was first proposed and demonstrated in HL-1M. Recently, new results of the MBI experiment were obtained by increasing the pressure of the gas. A stair-shaped density increment was obtained with high-pressure multi-pulse MBI just like the density evolution behaviour during multi-pellet injection. It is shown that injected particles penetrated into the core region of the plasma. HL-2A is a divertor tokamak constructed at SWIP based on the original ASDEX main components. The mission of the HL-2A project is to explore the physics issues involved in an advanced tokamak. For the first phase, divertor (edge plasma) and confinement research will be emphasized. The major parameters of HL-2A are R = 1.65 m, a = 0.4 m, Bt = 2.8 T, IP = 0.48 MA. The main parameters and characteristics of the subsystems such as power supply, pumping, diagnostics and auxiliary heating are presented in this paper. The first plasma of HL-2A was obtained at the end of 2002.

  20. High Degree of HIV-1 Group M (HIV-1M) Genetic Diversity within Circulating Recombinant Forms: Insight into the Early Events of HIV-1M Evolution.

    PubMed

    Tongo, Marcel; Dorfman, Jeffrey R; Martin, Darren P

    2016-03-01

    The existence of various highly divergent HIV-1 lineages and of recombination-derived sequence tracts of indeterminate origin within established circulating recombinant forms (CRFs) strongly suggests that HIV-1 group M (HIV-1M) diversity is not fully represented under the current classification system. Here we used a fully exploratory screen for recombination on a set of 480 near-full-length genomes representing the full known diversity of HIV-1M. We decomposed recombinant sequences into their constituent parts and then used maximum-likelihood phylogenetic analyses of this mostly recombination-free data set to identify rare divergent sequence lineages that fall outside the major named HIV-1M taxonomic groupings. We found that many of the sequence fragments occurring within CRFs (including CRF04_cpx, CRF06_cpx, CRF11_cpx, CRF18_cpx, CRF25_cpx, CRF27_cpx, and CRF49_cpx) are in fact likely derived from divergent unclassified parental lineages that may predate the current subtypes, even though they are presently identified as derived from currently defined HIV-1M subtypes. Our evidence suggests that some of these CRFs are descended predominantly from what were or are major previously unidentified HIV-1M lineages that were likely epidemiologically relevant during the early stages of the HIV-1M epidemic. The restriction of these divergent lineages to the Congo basin suggests that they were less infectious and/or simply not present at the time and place of the initial migratory wave that triggered the global epidemic.IMPORTANCE HIV-1 group M (HIV-1M) likely spread to the rest of the world from the Congo basin in the mid-1900s (N. R. Faria et al., Science 346:56-61, 2014, http://dx.doi.org/10.1126/science.1256739) and is today the principal cause of the AIDS pandemic. Here, we show that large sequence fragments from several HIV-1M circulating recombinant forms (CRFs) are derived from divergent parental lineages that cannot reasonably be classified within the nine

  1. Detection probabilities of electrofishing, hoop nets, and benthic trawls for fishes in two western North American rivers

    USGS Publications Warehouse

    Smith, Christopher D.; Quist, Michael C.; Hardy, Ryan S.

    2015-01-01

    Research comparing different sampling techniques helps improve the efficiency and efficacy of sampling efforts. We compared the effectiveness of three sampling techniques (small-mesh hoop nets, benthic trawls, boat-mounted electrofishing) for 30 species in the Green (WY, USA) and Kootenai (ID, USA) rivers by estimating conditional detection probabilities (probability of detecting a species given its presence at a site). Electrofishing had the highest detection probabilities (generally greater than 0.60) for most species (88%), but hoop nets also had high detectability for several taxa (e.g., adult burbot Lota lota, juvenile northern pikeminnow Ptychocheilus oregonensis). Benthic trawls had low detection probabilities (<0.05) for most taxa (84%). Gear-specific effects were present for most species indicating large differences in gear effectiveness among techniques. In addition to gear effects, habitat characteristics also influenced detectability of fishes. Most species-specific habitat relationships were idiosyncratic and reflected the ecology of the species. Overall findings of our study indicate that boat-mounted electrofishing and hoop nets are the most effective techniques for sampling fish assemblages in large, coldwater rivers.

  2. Composition and diversity patterns of megafauna discards in the deep-water shrimp trawl fishery off Brazil.

    PubMed

    Perez, J A A; Pereira, B N; Pereira, D A; Schroeder, R

    2013-10-01

    Composition and spatial diversity patterns of retained and discarded catches in the deep-water shrimp (family Aristeidae) trawling fishery off Brazil were assessed by observers on-board commercial operations in 2005 and 2006. These trawls caught 19,440 kg and 180,076 individuals of which 76·0 and 65·2%, respectively, were discarded at sea. Finfishes represented 54% of the numerical catch but were almost fully discarded (98%). Crustaceans represented 40% of the numerical catch and were mostly retained (80%). The scarlet shrimp Aristaeopsis edwardsiana comprised approximately half of the retained catch. The remainder of the retained proportion comprised mainly the red giant shrimp Aristaeomorpha foliacea, the alistado shrimp Aristeus antillensis and small quantities of Argentine hake Merluccius hubbsi and gulf hake Urophycis mystacea. Discards comprised 108 species including 72 fish species, 19 crustaceans and 10 cephalopods. The large-scaled lanternfish Neoscopelus macrolepidotus was dominant in the discards, followed by the benthopelagic fishes Monomitopus agassizii, Synagrops bellus, Dibranchus atlanticus and Gadella imberbis and various macrurid species. This fishery was restricted to a limited bathymetric range (700-800 m), where discrete megafauna assemblages exist and may have been significantly affected. PMID:24090549

  3. Pair-Trawl Detection of PIT-Tagged Juvenile Salmonids Migrating in the Columbia River Estuary, 2008 Report of Research.

    SciTech Connect

    Magie, Robert J.; Morris, Matthew S.; Ledgerwood, Richard D.

    2009-06-03

    In 2008, we sampled migrating juvenile Pacific salmonids Oncorhynchus spp. tagged with passive integrated transponder (PIT) tags using a surface pair trawl in the upper Columbia River estuary (rkm 61-83). The cod-end of the trawl was replaced with a cylindrical PIT-tag detection antenna with an 86-cm-diameter fish-passage opening and two detection coils connected in series. The pair trawl was 105 m long with a 91.5-m opening between the wings and a sample depth of 4.9 m. Also during 2008, we finalized the development of a prototype 'matrix' antenna, which was larger than previous antennas by a considerable magnitude. The matrix antenna consisted of 6 coils: a 3-coil front component and a 3-coil rear component, which were separated by 1.5-m of net mesh. The fish-passage opening was 2.5 m wide by 3.0 m tall and was attached to a standard-size pair trawl net. Intermittent sampling with a single crew began on 7 March and targeted yearling Chinook salmon O. tshawytscha and steelhead O. mykiss. Daily sampling using two crews began on 30 April and continued through 14 June; during this period we detected 2.7% of all juvenile salmonids previously detected at Bonneville Dam--a measure of sample efficiency. Sampling with a single crew continued through 20 August and targeted subyearling Chinook salmon. We detected 7,397 yearling Chinook salmon, 2,735 subyearling Chinook salmon, 291 coho salmon O. kisutch, 5,950 steelhead, and 122 sockeye salmon O. nerka in the upper estuary. We deployed the matrix antenna system and the older, cylindrical antenna system (86-cm-diameter fish-passage opening) simultaneously in mid-May 2008 to test matrix detection efficiency. The cylindrical antenna system had been used successfully in 2007 and early 2008. Because distribution of migrating salmonids in the estuary changes rapidly, we felt that a tandem sampling effort between the two systems was the only way to truly evaluate comparative detection efficiency. We deployed both systems within 1

  4. 50 CFR Table 35 to Part 679 - Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access...

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Apportionment of Crab PSC and Halibut PSC... 35 to Part 679—Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access Sectors Fishery Year Halibut PSC limit in the BSAI Zone 1 Red king crab PSC limit . . ....

  5. 50 CFR Table 35 to Part 679 - Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access...

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Apportionment of Crab PSC and Halibut PSC... 35 to Part 679—Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access Sectors Fishery Year Halibut PSC limit in the BSAI Zone 1 Red king crab PSC limit . . ....

  6. 50 CFR Table 35 to Part 679 - Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access...

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Apportionment of Crab PSC and Halibut PSC... 35 to Part 679—Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access Sectors Fishery Year Halibut PSC limit in the BSAI Zone 1 Red king crab PSC limit . . ....

  7. 50 CFR Table 35 to Part 679 - Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access...

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Apportionment of Crab PSC and Halibut PSC... 35 to Part 679—Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access Sectors Fishery Year Halibut PSC limit in the BSAI Zone 1 Red king crab PSC limit . . ....

  8. 50 CFR Table 35 to Part 679 - Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access...

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Apportionment of Crab PSC and Halibut PSC... 35 to Part 679—Apportionment of Crab PSC and Halibut PSC Between the Amendment 80 and BSAI Trawl Limited Access Sectors Fishery Year Halibut PSC limit in the BSAI Zone 1 Red king crab PSC limit . . ....

  9. 50 CFR Table 2 (south) to Part 660... - Non-Trawl Rockfish Conservation Areas and Trip Limits for Limited Entry Fixed Gear South of 40°10...

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ..., Subpart E Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES Pt. 660, Subpt. E, Table 2 Table 2 (South) to Part 660, Subpart E—Non-Trawl Rockfish Conservation Areas and Trip Limits for...

  10. 50 CFR Table 2 (north) to Part 660... - Non-Trawl Rockfish Conservation Areas and Trip Limits for Limited Entry Fixed Gear North of 40°10...

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ..., Subpart E Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES Pt. 660, Subpt. E, Table 2 Table 2 (North) to Part 660, Subpart E—Non-Trawl Rockfish Conservation Areas and Trip Limits for...

  11. 50 CFR Table 2 (south) to Part 660... - Non-Trawl Rockfish Conservation Areas and Trip Limits for Limited Entry Fixed Gear South of 40°10...

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ..., Subpart E Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES Pt. 660, Subpt. E, Table 2 Table 2 (South) to Part 660, Subpart E—Non-Trawl Rockfish Conservation Areas and Trip Limits for...

  12. 50 CFR Table 2 (north) to Part 660... - Non-Trawl Rockfish Conservation Areas and Trip Limits for Limited Entry Fixed Gear North of 40°10...

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ..., Subpart E Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES Pt. 660, Subpt. E, Table 2 Table 2 (North) to Part 660, Subpart E—Non-Trawl Rockfish Conservation Areas and Trip Limits for...

  13. 50 CFR Table 2 (south) to Part 660... - Non-Trawl Rockfish Conservation Areas and Trip Limits for Limited Entry Fixed Gear South of 40°10...

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ..., Subpart E Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES Pt. 660, Subpt. E, Table 2 Table 2 (South) to Part 660, Subpart E—Non-Trawl Rockfish Conservation Areas and Trip Limits for...

  14. 50 CFR Table 2 (north) to Part 660... - Non-Trawl Rockfish Conservation Areas and Trip Limits for Limited Entry Fixed Gear North of 40°10...

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ..., Subpart E Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES Pt. 660, Subpt. E, Table 2 Table 2 (North) to Part 660, Subpart E—Non-Trawl Rockfish Conservation Areas and Trip Limits for...

  15. 50 CFR Figure 5 to Part 679 - Kodiak Island Type 1, 2, and 3 Nonpelagic Trawl Closure Status and Marmot Bay Tanner Crab...

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Kodiak Island Type 1, 2, and 3 Nonpelagic Trawl Closure Status and Marmot Bay Tanner Crab Protection Area 5 Figure 5 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF...

  16. 50 CFR Table 2 (north) to Part 660... - Non-Trawl Rockfish Conservation Areas and Trip Limits for Limited Entry Fixed Gear North of 40°10...

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ..., Subpart E Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES Pt. 660, Subpt. E, Table 2 Table 2 (North) to Part 660, Subpart E—Non-Trawl Rockfish Conservation Areas and Trip Limits for...

  17. 50 CFR Table 2 (south) to Part 660... - Non-Trawl Rockfish Conservation Areas and Trip Limits for Limited Entry Fixed Gear South of 40°10...

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ..., Subpart E Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES Pt. 660, Subpt. E, Table 2 Table 2 (South) to Part 660, Subpart E—Non-Trawl Rockfish Conservation Areas and Trip Limits for...

  18. 50 CFR Table 33 to Part 679 - Annual Apportion of Amendment 80 Species ITAC Between the Amendment 80 and BSAI Trawl Limited...

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Annual Apportion of Amendment 80 Species ITAC Between the Amendment 80 and BSAI Trawl Limited Access Sectors (Except Yellowfin Sole) 33 Table 33... ALASKA Pt. 679, Table 33 Table 33 to Part 679— Annual Apportion of Amendment 80 Species ITAC Between...

  19. 50 CFR Table 33 to Part 679 - Annual Apportion of Amendment 80 Species ITAC Between the Amendment 80 and BSAI Trawl Limited...

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Annual Apportion of Amendment 80 Species ITAC Between the Amendment 80 and BSAI Trawl Limited Access Sectors (Except Yellowfin Sole) 33 Table 33 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE...

  20. Identification of proteins specifically interacting with YB-1 mRNA 3' UTR and the effect of hnRNP Q on YB-1 mRNA translation.

    PubMed

    Lyabin, D N; Nigmatullina, L F; Doronin, A N; Eliseeva, I A; Ovchinnikov, L P

    2013-06-01

    In this study, proteins specifically interacting with the 3' untranslated region (UTR) of mRNA of the multifunctional Y-box-binding protein 1 (YB-1) were identified. One of these, hnRNP Q, was shown to specifically interact with the regulatory element (RE) in YB-1 mRNA 3' UTR and to inhibit translation of this mRNA. Its binding to the RE was accompanied by displacement from this element of the poly(A)-binding protein (PABP), a positive regulator of YB-1 mRNA translation, and by enhanced binding of the negative YB-1 mRNA translation regulator - YB-1 itself. PMID:23980891

  1. The occupation of trawl fishing and the medical aid available to the Grimsby deep sea fisherman1

    PubMed Central

    Moore, S. R. W.

    1969-01-01

    Moore, S. R. W. (1969).Brit. J. industr. Med.,26, 1-24. The occupation of trawl fishing and the medical aid available to the Grimsby deep sea fisherman. The mortality of fishermen is twice that of coalminers. Because of the method of fishing the mortality of the trawlerman is probably higher. Outside the industry little is known about the occupation of trawl fishing. Its size, the number of men employed, and the number and distribution of trawlers are therefore described, with particular reference to the port of Grimsby. As near, middle, and deep water trawlers sail from Grimsby, its industry gives a good representation of conditions in the industry as a whole. The port and the fishing grounds are described. The composition of the trawler crew, their conditions of work, accommodation, and remuneration are explained. A description is given of the trawl apparatus, fishing operations, and the hazards involved, and extracts from the writer's diary of a fishing voyage are appended. The United Kingdom has ratified the Accommodation of Crews (Fishermen) Convention 1966 of the International Labour Organisation, and an informal survey of a modern trawler fleet showed that it fell short of the requirements of this Convention. Accommodation is confined and the crew live and work in close proximity and in conditions of physical discomfort. Trawlermen work for long hours under conditions which would not be tolerated by the shore worker. The method of payment is such that trawlermen may take unnecessary risks. Earnings depend on team work so that illness and injury are often not reported with consequent deterioration of the condition. Physical fatigue and lack of sleep contribute to an increased accident rate. It is therefore recommended that more men per trawler should be employed to allow shorter working hours. As the skipper and mate are paid wholly on a share basis, the remainder of the crew receiving, in addition, a basic wage, it `pays' the trawlermen to take risks. A

  2. Development of a new multiple sampling trawl with autonomous opening/closing net control system for sampling juvenile pelagic fish

    NASA Astrophysics Data System (ADS)

    Oozeki, Yoshioki; Hu, Fuxiang; Tomatsu, Chiaki; Kubota, Hiroshi

    2012-03-01

    A new multiple layer sampling trawl with an autonomous net opening/closing control system was developed to sample pelagic juvenile fish quantitatively. The new trawl system, based on the Matsuda-Oozeki-Hu Trawl (MOHT), has a rigid-frame 3.3 m high and 2.35 m wide and five nets of 11.0 m length with a rectangular mouth of 2.22 m×1.81 m (4 m2 mouth area; large-scale prototype). A cambered V-shape depressor is hung below the frame and two bridles are attached at the midpoint of the side frames. A net-release controller is used, which not only controls the net release mechanism but also records the net depth, temperature and flow rate during net towing. The controller sends stored command signals to the net release mechanism as depth settings and/or time settings and does not require any commands from the surface through a conducting cable or by acoustic signals. Two other models were constructed before the construction of the large-scale prototype, which are a small-scale prototype (2 m2 mouth area) for testing the net release mechanism and a 1/4-scale model of the large-scale prototype for flume tank tests. Flume tank tests with the 1/4-scale model showed that the frame leaned forward at a tilt angle from 5 to 15 degrees at towing speeds from 0.8 to 1.4 m s-1. Opened nets closed smoothly and sequentially nets were completely opened when the trigger was released by the command. Net depth rarely changed even during changes in towing speed. Sea trials both by the small-scale and the large-scale prototype demonstrated the same towing characteristics expected from the flume tank tests. The newly developed multiple layer opening/closing MOHT (MOC-MOHT) is considered to be suitable for quantitative layer sampling of juvenile fish.

  3. [Exploitation of the shrimp trawl fishery in the period 1991-1999 at the Gulf of Nicoya, Costa Rica].

    PubMed

    Tabash Blanco, Farid A

    2007-03-01

    In Costa Rica, the Gulf of Nicoya shrimp fishery originated in 1952 and represented one of the most important economic activities in the region. Nevertheless, overfishery reduced the captured volumes to levels that prevent this commercial activity. I analyzed official fishery statistics between 1991 and 1999. These species involved are: two species of white shrimp, (Litopenaeus occidentalis and L. stylirostris), the "titi" shrimp (Xiphopenaeus riveti), the brown shrimp (Farfantepenaeus californiensis), the "pinki" shrimp (F. brevirostris) and the "fidel" shrimp (Solenocera agassizi). All the species reached the Maximum Sustainable Yield in the decades of 1970 and 1980 and are now found at over-exploitation levels. I recommend that this shrimp trawl fishery be completely closed down. PMID:18457129

  4. [Growth, mortality and exploitation rate of Priacanthus arenatus (Perciformes: Priacanthidae), in the trawl fisheries of northeast Venezuela].

    PubMed

    Toledo, J; Mendoza, J; Marcano, L

    2000-12-01

    We analyzed growth, mortality and exploitation rate of Priacanhus arenatus, captured by the shrimp trawling fishery (1989-1996), in northeastern Venezuela. The growth coefficient (K) and the asymptotic length (L8) were estimated by length-frequency data using the Battacharya method and other routines of the FISAT program. Total mortality (Z) and exploitation (E) rates were obtained by length-converted catch curve analysis, based on length-frequency data, and the Berverton and Holt's yield per recruit model, respectively. The mean growth parameters L and K were estimated as 474.7 mm and 0.69 year(-1), respectively. Mean total mortality was 4.03 and the exploitation rate range was 0.70-0.80. Results indicated that the population is overexploited. PMID:15272462

  5. SmeltCam: Underwater Video Codend for Trawled Nets with an Application to the Distribution of the Imperiled Delta Smelt

    PubMed Central

    Feyrer, Frederick; Portz, Donald; Odum, Darren; Newman, Ken B.; Sommer, Ted; Contreras, Dave; Baxter, Randall; Slater, Steven B.; Sereno, Deanna; Van Nieuwenhuyse, Erwin

    2013-01-01

    Studying rare and sensitive species is a challenge in conservation biology. The problem is exemplified by the case of the imperiled delta smelt Hypomesus transpacificus, a small delicate fish species endemic to the San Francisco Estuary, California. Persistent record-low levels of abundance and relatively high sensitivity to handling stress pose considerable challenges to studying delta smelt in the wild. To attempt to overcome these and other challenges we have developed the SmeltCam, an underwater video camera codend for trawled nets. The SmeltCam functions as an open-ended codend that automatically collects information on the number and species of fishes that pass freely through a trawled net without handling. We applied the SmeltCam to study the fine-scale distribution of juvenile delta smelt in the water column in the upper San Francisco Estuary. We learned that during flood tides delta smelt were relatively abundant throughout the water column and that during ebb tides delta smelt were significantly less abundant and occurred only in the lower half and sides of the water column. The results suggest that delta smelt manipulate their position in the water column to facilitate retention in favorable habitats. With the application of the SmeltCam we increased the survival of individual delta smelt by 72% compared to using a traditional codend, where all of the fish would have likely died due to handling stress. The SmeltCam improves upon similar previously developed silhouette photography or video recording devices and demonstrates how new technology can be developed to address important questions in conservation biology as well as lessen the negative effects associated with traditional sampling methods on imperiled species. PMID:23861814

  6. SmeltCam: underwater video codend for trawled nets with an application to the distribution of the imperiled delta smelt.

    PubMed

    Feyrer, Frederick; Portz, Donald; Odum, Darren; Newman, Ken B; Sommer, Ted; Contreras, Dave; Baxter, Randall; Slater, Steven B; Sereno, Deanna; Van Nieuwenhuyse, Erwin

    2013-01-01

    Studying rare and sensitive species is a challenge in conservation biology. The problem is exemplified by the case of the imperiled delta smelt Hypomesus transpacificus, a small delicate fish species endemic to the San Francisco Estuary, California. Persistent record-low levels of abundance and relatively high sensitivity to handling stress pose considerable challenges to studying delta smelt in the wild. To attempt to overcome these and other challenges we have developed the SmeltCam, an underwater video camera codend for trawled nets. The SmeltCam functions as an open-ended codend that automatically collects information on the number and species of fishes that pass freely through a trawled net without handling. We applied the SmeltCam to study the fine-scale distribution of juvenile delta smelt in the water column in the upper San Francisco Estuary. We learned that during flood tides delta smelt were relatively abundant throughout the water column and that during ebb tides delta smelt were significantly less abundant and occurred only in the lower half and sides of the water column. The results suggest that delta smelt manipulate their position in the water column to facilitate retention in favorable habitats. With the application of the SmeltCam we increased the survival of individual delta smelt by 72% compared to using a traditional codend, where all of the fish would have likely died due to handling stress. The SmeltCam improves upon similar previously developed silhouette photography or video recording devices and demonstrates how new technology can be developed to address important questions in conservation biology as well as lessen the negative effects associated with traditional sampling methods on imperiled species. PMID:23861814

  7. 50 CFR Table 3 (south) to Part 660... - Non-Trawl Rockfish Conservation Areas and Trip Limits for Open Access Gears South of 40°10′ N. Lat.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Non-Trawl Rockfish Conservation Areas and Trip Limits for Open Access Gears South of 40°10â² N. Lat. 3 Table 3 (South) to Part 660, Subpart F...) to Part 660, Subpart F—Non-Trawl Rockfish Conservation Areas and Trip Limits for Open Access...

  8. 50 CFR Table 3 (north) to Part 660... - Non-Trawl Rockfish Conservation Areas and Trip Limits for Open Access Gears North of 40°10′ N. Lat.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Non-Trawl Rockfish Conservation Areas and Trip Limits for Open Access Gears North of 40°10â² N. Lat. 3 Table 3 (North) to Part 660, Subpart F...) to Part 660, Subpart F—Non-Trawl Rockfish Conservation Areas and Trip Limits for Open Access...

  9. 50 CFR Table 3 (south) to Part 660... - Non-Trawl Rockfish Conservation Areas and Trip Limits for Open Access Gears South of 40°10′ N. Lat.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Non-Trawl Rockfish Conservation Areas and Trip Limits for Open Access Gears South of 40°10â² N. Lat. 3 Table 3 (South) to Part 660, Subpart F...) to Part 660, Subpart F—Non-Trawl Rockfish Conservation Areas and Trip Limits for Open Access...

  10. 50 CFR Table 3 (north) to Part 660... - Non-Trawl Rockfish Conservation Areas and Trip Limits for Open Access Gears North of 40°10′ N. Lat.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Non-Trawl Rockfish Conservation Areas and Trip Limits for Open Access Gears North of 40°10â² N. Lat. 3 Table 3 (North) to Part 660, Subpart F...) to Part 660, Subpart F—Non-Trawl Rockfish Conservation Areas and Trip Limits for Open Access...

  11. Relationship between mid-water trawling effort and catch composition uncertainty in two large lakes (Huron and Michigan) dominated by alosines, osmerids, and coregonines

    USGS Publications Warehouse

    Warner, David M.; Claramunt, Randall M.; Schaeffer, Jeffrey S.; Yule, Daniel L.; Hrabik, Tom R.; Peintka, Bernie; Rudstam, Lars G.; Holuszko, Jeffrey D.; O'Brien, Timothy P.

    2012-01-01

    Because it is not possible to identify species with echosounders alone, trawling is widely used as a method for collecting species and size composition data for allocating acoustic fish density estimates to species or size groups. In the Laurentian Great Lakes, data from midwater trawls are commonly used for such allocations. However, there are no rules for how much midwater trawling effort is required to adequately describe species and size composition of the pelagic fish communities in these lakes, so the balance between acoustic sampling effort and trawling effort has been unguided. We used midwater trawl data collected between 1986 and 2008 in lakes Michigan and Huron and a variety of analytical techniques to develop guidance for appropriate levels of trawl effort. We used multivariate regression trees and re-sampling techniques to i. identify factors that influence species and size composition of the pelagic fish communities in these lakes, ii. identify stratification schemes for the two lakes, iii. determine if there was a relationship between uncertainty in catch composition and the number of tows made, and iv. predict the number of tows required to reach desired uncertainty targets. We found that depth occupied by fish below the surface was the most influential explanatory variable. Catch composition varied between lakes at depths <38.5 m below the surface, but not at depths ≥38.5 m below the surface. Year, latitude, and bottom depth influenced catch composition in the near-surface waters of Lake Michigan, while only year was important for Lake Huron surface waters. There was an inverse relationship between RSE [relative standard error = 100 × (SE/mean)] and the number of tows made for the proportions of the different size and species groups. We found for the fifth (Lake Huron) and sixth (Lake Michigan) largest lakes in the world, 15–35 tows were adequate to achieve target RSEs (15% and 30%) for ubiquitous species, but rarer species required much

  12. Experiments and Studies of Edge Plasma Radial Transport and Confinement Property on the HL-1M Tokamak

    NASA Astrophysics Data System (ADS)

    Hong, Wen-yu; Wang, En-yao; Pan, Yu-dong; Li, Qiang

    2000-08-01

    This paper describes a Mach/Langmuir probe array with five pins and six pins, which can measure not only parallel flows and the flow perpendicular to the magnetic field but also the radial and the poloidal electric field Er and Eθ as well. Experimental measurements of the edge fluctuations, velocities of the toroidal, the poloidal flow and electric field have been carried out on both of SOL and the boundary region of HL-1M for Ohmic, biased H-mode, Lower Hybrid Current Drive (LHCD), Supersonic Molecular Beam Injection (MBI), Multi-shot Pellet Injection (MPI), Neutral Beam Injection (NBI), Ion Cyclotron Resonance Heating (ICRH) and Electric Cyclotron Resonance Heating (ECRH) discharges. The results show that the suppressions of the fluctuations are related to poloidal rotations produced by different discharge modes in the improved particle confinement property, simultaneously the change of the radial and poloidal electric field is generated and becomes more negative at the Tokamak plasma edge, and the sheared poloidal flow is related to the reduction in fluctuation level, and the poloidal velocity is mainly dominated by the E × B drift.

  13. 114. JOB NO. 1347K, SHEET 1M, 1929, FORD MOTOR COMPANY; ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    114. JOB NO. 1347-K, SHEET 1M, 1929, FORD MOTOR COMPANY; BOILER HOUSE ASSEMBLY PLANT; PLAN - Ford Motor Company Long Beach Assembly Plant, Assembly Building, 700 Henry Ford Avenue, Long Beach, Los Angeles County, CA

  14. DETAIL VIEW OF THE TIRE INFLATION CAGE, ROOM 1M8, FACING ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    DETAIL VIEW OF THE TIRE INFLATION CAGE, ROOM 1M8, FACING NORTHEAST - Cape Canaveral Air Force Station, Launch Complex 39, Vehicle Assembly Building, VAB Road, East of Kennedy Parkway North, Cape Canaveral, Brevard County, FL

  15. 5. JOB NO. 1347B, SHEET 1M, 1927, OIL HOUSE; FORD ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    5. JOB NO. 1347-B, SHEET 1M, 1927, OIL HOUSE; FORD MOTOR COMPANY; FOUNDATION, PLOT PLAN AND DETAILS - Ford Motor Company Long Beach Assembly Plant, Oil House, 700 Henry Ford Avenue, Long Beach, Los Angeles County, CA

  16. Complete Genome Sequence of Methylobacterium populi P-1M, Isolated from Pink-Pigmented Household Biofilm.

    PubMed

    Morohoshi, Tomohiro; Ikeda, Tsukasa

    2016-01-01

    Methylobacterium populi P-1M is isolated from the pink-pigmented household biofilm. Here, we present the complete genome sequence of P-1M, consisting of one chromosome of 5,705,640 bp and five plasmids of 64,864 bp, 59,879 bp, 42,569 bp, 41,417 bp, and 29,506 bp. PMID:27313289

  17. Complete Genome Sequence of Methylobacterium populi P-1M, Isolated from Pink-Pigmented Household Biofilm

    PubMed Central

    Morohoshi, Tomohiro

    2016-01-01

    Methylobacterium populi P-1M is isolated from the pink-pigmented household biofilm. Here, we present the complete genome sequence of P-1M, consisting of one chromosome of 5,705,640 bp and five plasmids of 64,864 bp, 59,879 bp, 42,569 bp, 41,417 bp, and 29,506 bp. PMID:27313289

  18. 50 CFR Table 1 (south) to Part 660... - 2010 Trip Limits for Limited Entry Trawl Gear South of 40°10′ N. Lat.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false 2010 Trip Limits for Limited Entry Trawl Gear South of 40°10â² N. Lat. 1 Table 1 (South) to Part 660, Subpart D Wildlife and Fisheries FISHERY...) FISHERIES OFF WEST COAST STATES Pt. 660, Subpt. D, Table 1 Table 1 (South) to Part 660, Subpart D—2010...

  19. 50 CFR Table 1 (north) to Part 660... - 2010 Trip Limits for Limited Entry Trawl Gear North of 40°10′ N. Lat.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false 2010 Trip Limits for Limited Entry Trawl Gear North of 40°10â² N. Lat. 1 Table 1 (North) to Part 660, Subpart D Wildlife and Fisheries FISHERY...) FISHERIES OFF WEST COAST STATES Pt. 660, Subpt. D, Table 1 Table 1 (North) to Part 660, Subpart D—2010...

  20. 50 CFR Table 1 (north) to Part 660... - Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and...

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting North of 40°10â² N. Lat. 1 Table 1... Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting North of 40°10′ N....

  1. 50 CFR Table 1 (south) to Part 660... - Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and...

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting South of 40°10â² N. Lat. 1 Table 1... Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting South of 40°10′ N....

  2. 50 CFR Table 1 (north) to Part 660... - Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and...

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting North of 40°10â² N. Lat. 1 Table 1... Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting North of 40°10′ N....

  3. 50 CFR Table 1 (south) to Part 660... - Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and...

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting South of 40°10â² N. Lat. 1 Table 1... Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting South of 40°10′ N....

  4. Evaluation of changes in macrobenthic standing stock and polychaete community structure along the south eastern Arabian Sea shelf during the monsoon trawl-ban

    NASA Astrophysics Data System (ADS)

    Abdul Jaleel, K. U.; Parameswaran, Usha V.; Gopal, Aiswarya; Khader, Chippy; Ganesh, T.; Sanjeevan, V. N.; Shunmugaraj, T.; Vijayan, Anil Kumar; Gupta, G. V. M.

    2015-07-01

    The south eastern Arabian Sea is characterized by moderate coastal upwelling, high biological production and subsurface oxygen depletion during the southwest monsoon (June-September). Concurrently, a seasonal closure to trawling activities (15th June-31st July) is implemented here, as a sustainable ecosystem management practise. The effects of monsoon driven environmental changes and consequences of trawling cessation on macrofauna were assessed, based on surveys at 12 sites (30-200 m) preceding and during different phases of the southwest monsoon. Macrofaunal density and biomass increased considerably towards the mid and late monsoon along the inner shelf (30-50 m) where trawling is intense, while no temporal changes were observed along the outer shelf (100-200 m). Density increased four-folds at the 30 m contour and three-folds at 50 m, while biomass nearly doubled at both depths, reflecting a marked increase in density of polychaetes (61-87% of macrofauna). The disproportionate increase in faunal density and biomass along the inner shelf (30-50 m) was due to abundance of juvenile polychaetes and dominance of small-sized opportunists towards late monsoon (August-September). A concurrent hike in nominal species count of polychaetes was also observed in the study area. The increase in polychaete standing stock and high density of planktonic larvae during onset and peak monsoon, coupled with occurrence of juveniles as well as gamete-bearing adults in sediments, indicates that the southwest monsoon is a peak breeding season for the dominant polychaetes in the region. The trawl-ban during this period facilitates the recoupment of benthos by maximising spawning success and larval settlement, thereby enhancing overall ecosystem integrity.

  5. 50 CFR Table 1 (south) to Part 660... - Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and...

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting South of 40°10â² N. Lat. 1 Table 1... Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting South of 40°10′ N....

  6. 50 CFR Table 1 (north) to Part 660... - Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and...

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting North of 40°10â² N. Lat. 1 Table 1... Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting North of 40°10′ N....

  7. 50 CFR Table 1 (north) to Part 660... - Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and...

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting North of 40°10â² N. Lat. 1 Table 1... Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting North of 40°10′ N....

  8. 50 CFR Table 1 (south) to Part 660... - Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and...

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Limited Entry Trawl Rockfish Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting South of 40°10â² N. Lat. 1 Table 1... Conservation Areas and Landing Allowances for non-IFQ Species and Pacific Whiting South of 40°10′ N....

  9. Disrupted-in-schizophrenia 1 regulates transport of ITPR1 mRNA for synaptic plasticity.

    PubMed

    Tsuboi, Daisuke; Kuroda, Keisuke; Tanaka, Motoki; Namba, Takashi; Iizuka, Yukihiko; Taya, Shinichiro; Shinoda, Tomoyasu; Hikita, Takao; Muraoka, Shinsuke; Iizuka, Michiro; Nimura, Ai; Mizoguchi, Akira; Shiina, Nobuyuki; Sokabe, Masahiro; Okano, Hideyuki; Mikoshiba, Katsuhiko; Kaibuchi, Kozo

    2015-05-01

    Disrupted-in-schizophrenia 1 (DISC1) is a susceptibility gene for major psychiatric disorders, including schizophrenia. DISC1 has been implicated in neurodevelopment in relation to scaffolding signal complexes. Here we used proteomic analysis to screen for DISC1 interactors and identified several RNA-binding proteins, such as hematopoietic zinc finger (HZF), that act as components of RNA-transporting granules. HZF participates in the mRNA localization of inositol-1,4,5-trisphosphate receptor type 1 (ITPR1), which plays a key role in synaptic plasticity. DISC1 colocalizes with HZF and ITPR1 mRNA in hippocampal dendrites and directly associates with neuronal mRNAs, including ITPR1 mRNA. The binding potential of DISC1 for ITPR1 mRNA is facilitated by HZF. Studies of Disc1-knockout mice have revealed that DISC1 regulates the dendritic transport of Itpr1 mRNA by directly interacting with its mRNA. The DISC1-mediated mRNA regulation is involved in synaptic plasticity. We show that DISC1 binds ITPR1 mRNA with HZF, thereby regulating its dendritic transport for synaptic plasticity. PMID:25821909

  10. Chemical composition of short sediment cores from Thermaikos Gulf (Eastern Mediterranean): Sediment accumulation rates, trawling and winnowing effects

    NASA Astrophysics Data System (ADS)

    Karageorgis, A. P.; Kaberi, H.; Price, N. B.; Muir, G. K. P.; Pates, J. M.; Lykousis, V.

    2005-12-01

    Four cores recovered within the framework of the INTERPOL Project have been analysed for their grain size and geochemistry; sediment accumulation rates (SARs) were also determined from 210Pb and 137Cs profiles. Two cores are representative of the Axios and Aliakmon Rivers depositional environment, whilst the third core represents the Pinios River province; the fourth core represents an environment of outer shelf relict sands. Apparent SARs ranged between 0.667 g cm -2 yr -1 (Axios and Aliakmon Rivers) and 0.414 g cm -2 yr -1 (Pinios River). Trawling activities and biomixing are critical processes that may be responsible for the mixing of the surface sediments, as observed from the excess 210Pb profiles. The thickness of the surface mixed layer was 4.5 cm in the vicinity of Axios and Aliakmon Rivers and in the area of Pinios River, 3.75 cm on the outer shelf and 1 cm in the area where no trawling was observed. Sediment accumulation appeared to be regulated by variations in the riverine discharge, shelf transport pathways and winnowing processes. Major element variations, such as Si, Al, Ti, V and Ni, were dominated by terrigenous supply as aluminosilicate minerals and quartz, whereas most Ca and Sr were biogenic. Si/Al and Ca/Al ratios have been used to express changes in sediment accumulation and winnowing. Redox processes were depicted by Mn, which showed an increase in the depth of its redoxcline, from ˜1 cm in inshore stations to ˜2 cm on the outer shelf. Si/Al ratios follow the Ca/Al ratios and can be used to assess percentage winnowing in the sediment. Increases in these ratios indicate a decrease in sediment input rates and are seen in the upper parts of most of the cores. Anthropogenic or 'excess' metal contents have been calculated from Zn/V and Pb/V ratios. Their distributions in the cores showed that by far the highest contamination is associated with the Axios River output, whilst sediments influenced by the Pinios River were relatively uncontaminated.

  11. Characterization of proteins associating with 5' terminus of PGHS-1 mRNA.

    PubMed

    Bunimov, Natalia; Laneuville, Odette

    2010-06-01

    Induction of Prostaglandin Endoperoxide H Synthase-1 (PGHS-1) gene has been previously documented in a few studies during events such as development and cellular differentiation. However, molecular mechanisms governing the regulation of PGHS-1 gene expression and contributing to changes in protein levels are poorly understood. Using the MEG-01 cell model of PGHS-1 gene induction, our laboratory has previously demonstrated that the 5'UTR and the first two exons of PGHS-1 mRNA had a significant impact on decreasing the translational efficiency of a reporter gene and suggested that the presence of a secondary structure is required for conservation of this activity. This 5'end of PGHS-1 mRNA sequence has also been shown to associate with nucleolin protein. In the current study, we set to investigate the protein composition of the mRNP (messenger ribonucleoprotein) associating with the 5'end of PGHS-1 mRNA and to identify its protein members. RNA/protein binding assays coupled with LC-MS analysis identified serpin B1 and NF45 (nuclear factor 45) proteins as potential members of PGHS-1 mRNP complex. Immunoprecipitation experiments using MEG-01 protein extracts validated mass spectrometry data and confirmed binding of nucleolin, serpin B1, NF45 and NF90. The RNA fraction was extracted from immunoprecipitated mRNP complexes and association of RNA binding proteins, serpin B1, NF45 and NF90, to PGHS-1 mRNA target sequence was confirmed by RT-PCR. Together these data suggest that serpin B1, NF45 and NF90 associate with PGHS-1 mRNA and can potentially participate in the formation a single or a number of PGHS-1 ribonucleoprotein complexes, through nucleolin that possibly serves as a docking base for other protein complex members. PMID:20112001

  12. Epibenthic assemblages of the Tail of the Grand Bank and Flemish Cap (northwest Atlantic) in relation to environmental parameters and trawling intensity

    NASA Astrophysics Data System (ADS)

    Murillo, Francisco Javier; Serrano, Alberto; Kenchington, Ellen; Mora, José

    2016-03-01

    The structure, composition and distribution of epibenthic invertebrate assemblages on the Tail of the Grand Bank of Newfoundland and Flemish Cap (northwest Atlantic) were sampled using depth-stratified trawls. Faunal analysis of 152 uniquely identified taxa produced hierarchical synoptic tables of species associations with diagnostic indicators based on species fidelity. Twelve spatially coherent epibenthic megafaunal assemblages were identified, each with relatively sharp faunal boundaries and unique species attributes. These assemblages were shown a posteriori through ANOSIM to have statistically different species compositions, and were nested within three major regional-scale faunal groups: (I) the continental shelf of the Tail of the Grand Bank, typified by the sea cucumber Cucumaria frondosa and the sand dollar Echinarachnius parma; (II) the upper slope of the Grand Bank and top of Flemish Cap, typified by the sponges Radiella hemisphaerica and Iophon piceum and the sea star Ceramaster granularis; and (III) the lower slope of the Grand Bank and Flemish Cap, typified by the sea urchin Phormosoma placenta, and the sea pens Anthoptilum grandiflorum and Funiculina quadrangularis. Comparisons with literature on benthic species associations from a half century ago suggest that the assemblages identified herein have persisted in the area at least for decades. Detrended correspondence analysis (DCA) identified a well-defined biological gradient along the first axis with very high species turn-over. Ten environmental variables (including Trawling Intensity) were significantly correlated with the ordinated data. At one extreme the continental shelf faunal group (I) was associated with shallow depth (mostly, less than 200 m), coarse sediments and cold and fresh water associated with the Labrador Current. At the other extreme the lower slope faunal group (III; stations below 500-600 m throughout the study area) was strongly associated with deep water, muddy sediments, and

  13. Beam diagnostics

    SciTech Connect

    Bogaty, J.; Clifft, B.E.; Zinkann, G.P.; Pardo, R.C.

    1995-08-01

    The ECR-PII injector beam line is operated at a fixed ion velocity. The platform high voltage is chosen so that all ions have a velocity of 0.0085c at the PII entrance. If a previous tune configuration for the linac is to be used, the beam arrival time must be matched to the previous tune as well. A nondestructive beam-phase pickup detector was developed and installed at the entrance to the PII linac. This device provides continuous phase and beam current information and allows quick optimization of the beam injected into PII. Bunches traverse a short tubular electrode thereby inducing displacement currents. These currents are brought outside the vacuum interface where a lumped inductance resonates electrode capacitance at one of the bunching harmonic frequencies. This configuration yields a basic sensitivity of a few hundred millivolts signal per microampere of beam current. Beam-induced radiofrequency signals are summed against an offset frequency generated by our master oscillator. The resulting kilohertz difference frequency conveys beam intensity and bunch phase information which is sent to separate processing channels. One channel utilizes a phase locked loop which stabilizes phase readings if beam is unstable. The other channel uses a linear full wave active rectifier circuit which converts kilohertz sine wave signal amplitude to a D.C. voltage representing beam current. A prototype set of electronics is now in use with the detector and we began to use the system in operation to set the arrival beam phase. A permanent version of the electronics system for the phase detector is now under construction. Additional nondestructive beam intensity and phase monitors at the {open_quotes}Booster{close_quotes} and {open_quotes}ATLAS{close_quotes} linac sections are planned as well as on some of the high-energy beam lines. Such a monitor will be particularly useful for FMA experiments where the primary beam hits one of the electric deflector plates.

  14. Innovative real-time and non-destructive method of beam profile measurement under large beam current irradiation for BNCT

    NASA Astrophysics Data System (ADS)

    Takada, M.; Kamada, S.; Suda, M.; Fujii, R.; Nakamura, M.; Hoshi, M.; Sato, H.; Endo, S.; Hamano, T.; Arai, S.; Higashimata, A.

    2012-10-01

    We developed a real-time and non-destructive method of beam profile measurement on a target under large beam current irradiation, and without any complex radiation detectors or electrical circuits. We measured the beam profiles on a target by observing the target temperature using an infrared-radiation thermometer camera. The target temperatures were increased and decreased quickly by starting and stopping the beam irradiation within 1 s in response speed. Our method could trace beam movements rapidly. The beam size and position were calibrated by measuring O-ring heat on the target. Our method has the potential to measure beam profiles at beam current over 1 mA for proton and deuteron with the energy around 3 MeV and allows accelerator operators to adjust the beam location during beam irradiation experiments without decreasing the beam current.

  15. An integrative approach to detect subtle trophic niche differentiation in the sympatric trawling bat species Myotis dasycneme and Myotis daubentonii.

    PubMed

    Krüger, F; Clare, E L; Greif, S; Siemers, B M; Symondson, W O C; Sommer, R S

    2014-08-01

    Bats are well known for species richness and ecological diversity, and thus, they provide a good opportunity to study relationships and interaction between species. To assess interactions, we consider distinct traits that are probably to be triggered by niche shape and evolutionary processes. We present data on the trophic niche differentiation between two sympatric European trawling bat species, Myotis dasycneme and Myotis daubentonii, incorporating a wide spectrum of methodological approaches. We measure morphological traits involved in foraging and prey handling performance including bite force, weightlifting capacity and wing morphology. We then measure resulting prey consumption using both morphological and molecular diet analyses. These species closely resemble each other in morphological traits, however, subtle but significant differences were apparent in bite force and lift capacity, which are related to differences in basic body and head size. Both morphological and molecular diet analyses show strong niche overlap. We detected subtle differences in less frequent prey items, as well as differences in the exploitation of terrestrial and aquatic-based prey groups. Myotis dasycneme feeds more on aquatic prey, like Chironomidae and their pupal stages, or on the aquatic moth Acentria ephemerella. Myotis daubentonii feeds more on terrestrial prey, like Brachycera, or Coleoptera. This suggests that these bats use different microhabitats within the habitat where they co-occur. PMID:24164379

  16. DHPG Activation of Group 1 mGluRs in BLA Enhances Fear Conditioning

    ERIC Educational Resources Information Center

    Rudy, Jerry W.; Matus-Amat, Patricia

    2009-01-01

    Group 1 metabotropic glutamate receptors are known to play an important role in both synaptic plasticity and memory. We show that activating these receptors prior to fear conditioning by infusing the group 1 mGluR agonist, (R.S.)-3,5-dihydroxyphenylglycine (DHPG), into the basolateral region of the amygdala (BLA) of adult Sprague-Dawley rats…

  17. β-Adrenergic-stimulated macrophages: Comprehensive localization in the M1-M2 spectrum.

    PubMed

    Lamkin, Donald M; Ho, Hsin-Yun; Ong, Tiffany H; Kawanishi, Carly K; Stoffers, Victoria L; Ahlawat, Nivedita; Ma, Jeffrey C Y; Arevalo, Jesusa M G; Cole, Steve W; Sloan, Erica K

    2016-10-01

    β-Adrenergic signaling can regulate macrophage involvement in several diseases and often produces anti-inflammatory properties in macrophages, which are similar to M2 properties in a dichotomous M1 vs. M2 macrophage taxonomy. However, it is not clear that β-adrenergic-stimulated macrophages may be classified strictly as M2. In this in vitro study, we utilized recently published criteria and transcriptome-wide bioinformatics methods to map the relative polarity of murine β-adrenergic-stimulated macrophages within a wider M1-M2 spectrum. Results show that β-adrenergic-stimulated macrophages did not fit entirely into any one pre-defined category of the M1-M2 spectrum but did express genes that are representative of some M2 side categories. Moreover, transcript origin analysis of genome-wide transcriptional profiles located β-adrenergic-stimulated macrophages firmly on the M2 side of the M1-M2 spectrum and found active suppression of M1 side gene transcripts. The signal transduction pathways involved were mapped through blocking experiments and bioinformatics analysis of transcription factor binding motifs. M2-promoting effects were mediated specifically through β2-adrenergic receptors and were associated with CREB, C/EBPβ, and ATF transcription factor pathways but not with established M1-M2 STAT pathways. Thus, β-adrenergic-signaling induces a macrophage transcriptome that locates on the M2 side of the M1-M2 spectrum but likely accomplishes this effect through a signaling pathway that is atypical for M2-spectrum macrophages. PMID:27485040

  18. Toward a large lightweight mirror for AO: development of a 1m Ni coated CFRP mirror

    NASA Astrophysics Data System (ADS)

    Thompson, S. J.; Doel, A. P.; Brooks, D.; Strangwood, M.

    2008-07-01

    We present our recent developments towards the construction of a large, thin, single-piece mirror for adaptive optics (AO). Our current research program aims to have completed fabrication and testing of a 1m diameter, nickel coated carbon-fibre reinforced cyanate ester resin mirror by the last quarter of 2009. This composite mirror material is being developed to provide a lightweight and robust alternative to thin glass shell mirrors, with the challenge of future large deformable mirrors such as the 2.5m M4 on the E-ELT in mind. A detailed analysis of the material properties of test mirror samples is being performed at the University of Birmingham (UK), the first results of which are discussed and presented here. We discuss the project progress achieved so far, including fabrication of the 1m flat moulds for the replication process, manufacturing and testing methods for 20 cm diameter sample mirrors and system simulations.

  19. DigiCam: fully digital compact camera for SST-1M telescope

    NASA Astrophysics Data System (ADS)

    Aguilar, J. A.; Bilnik, W.; Bogacz, L.; Bulik, T.; Christov, A.; della Volpe, D.; Dyrda, M.; Frankowski, A.; Grudzinska, M.; Grygorczuk, J.; Heller, M.; Idźkowski, B.; Janiak, M.; Jamrozy, M.; Karczewski, M.; Kasperek, J.; Lyard, E.; Marszałek, A.; Michałowski, J.; Moderski, R.; Montaruli, T.; Neronov, A.; Nicolau-Kukliński, J.; Niemiec, J.; Ostrowski, M.; Paśko, P.; Płatos, Ł.; Prandini, E.; Pruchniewicz, R.; Rafalski, J.; Rajda, P. J.; Rameez, M.; Rataj, M.; Rupiński, M.; Rutkowski, K.; Seweryn, K.; Sidz, M.; Stawarz, Ł.; Stodulska, M.; Stodulski, M.; Tokarz, M.; Toscano, S.; Troyano Pujadas, I.; Walter, R.; Wawer, P.; Wawrzaszek, R.; Wiśniewski, L.; Zietara, K.; Ziółkowski, P.; Żychowski, P.

    2014-08-01

    The single mirror Small Size Telescopes (SST-1M), being built by a sub-consortium of Polish and Swiss Institutions of the CTA Consortium, will be equipped with a fully digital camera with a compact photodetector plane based on silicon photomultipliers. The internal trigger signal transmission overhead will be kept at low level by introducing a high level of integration. It will be achieved by massively deploying state-of-the-art multi-gigabit transceivers, beginning from the ADC flash converters, through the internal data and trigger signals transmission over backplanes and cables, to the camera's server 10Gb/s Ethernet links. Such approach will allow fitting the size and weight of the camera exactly to the SST-1M needs, still retaining the flexibility of a fully digital design. Such solution has low power consumption, high reliability and long lifetime. The concept of the camera will be described, along with some construction details and performance results.

  20. The role of passive potential in ultrasonic cavitation erosion of titanium in 1 M HCl solution.

    PubMed

    Li, D G; Wang, J D; Chen, D R; Liang, P

    2016-03-01

    The influence of the applied passive potential on the ultrasonic cavitation erosion of Ti specimen in 1 M HCl solution was investigated by mass loss experiment, scanning electron microscopy (SEM), electrochemical impedance spectra (EIS) and Mott-Schottky plot. The results showed that Ti was in the passive state within the potential region from -0.3 VSCE to 1.5 VSCE under ultrasonic cavitation erosion. The applied passive potential can obviously decrease the mass loss of Ti caused by ultrasonic cavitation erosion in 1 M HCl solution. The resistance of the passive film increased, the flat band potential moved to positive direction, and the donor density of the passive film decreased with increasing the passive potential. Finally, a physical model was provided to explain the experimental results based on energy band and semi-conductive theories. PMID:26585008

  1. Of social molecules: The interactive assembly of ASH1 mRNA-transport complexes in yeast

    PubMed Central

    Niedner, Annika; Edelmann, Franziska T; Niessing, Dierk

    2014-01-01

    Asymmetric, motor-protein dependent transport of mRNAs and subsequent localized translation is an important mechanism of gene regulation. Due to the high complexity of such motile particles, our mechanistic understanding of mRNA localization is limited. Over the last two decades, ASH1 mRNA localization in budding yeast has served as comparably simple and accessible model system. Recent advances have helped to draw an increasingly clear picture on the molecular mechanisms governing ASH1 mRNA localization from its co-transcriptional birth to its delivery at the site of destination. These new insights help to better understand the requirement of initial nuclear mRNPs, the molecular basis of specific mRNA-cargo recognition via cis-acting RNA elements, the different stages of RNP biogenesis and reorganization, as well as activation of the motile activity upon cargo binding. We discuss these aspects in context of published findings from other model organisms. PMID:25482892

  2. A purple-colored 1M mica clay from Silverton, Colorado

    USGS Publications Warehouse

    Tien, P.-L.

    1969-01-01

    A purple-colored clay of 1M mica polymorph in association with lead-zinc ore was collected from an abandoned mine dump near Silverton, Colorado. Electron micrographs show that the crystallites of the clay are less than 2?? in size and have poorly developed hexagonal outlines. Differential thermal and i.r. absorption analyses indicate similarity with those of muscovite. The structural formula of the 1M mica polymorph is (K1??45Na0??02) (Al3??75Mg0??19) (Si6??90Al1??10) O20(OH)4. The purple color may be related to trace amounts of manganese in the clay. ?? 1969.

  3. Engineering changes to the 0.1m cryogenic wind tunnel at Southampton University

    NASA Technical Reports Server (NTRS)

    Goodyer, M. J.

    1984-01-01

    The more important changes to the 0.1 m cryogenic wind tunnel since its completion in 1977 are outlined. These include detailed improvements in the fan drive to allow higher speeds, and the provision of a test section leg suitable for use with a magnetic suspension and balance system. The instrumentation, data logging, data reduction and tunnel controls were also improved and modernized. A tunnel performance summary is given.

  4. Ty1 Gag enhances the stability and nuclear export of Ty1 mRNA

    PubMed Central

    Checkley, Mary Ann; Mitchell, Jessica A.; Eizenstat, Linda D.; Lockett, Stephen J.; Garfinkel, David J.

    2012-01-01

    Retrotransposon and retroviral RNA delivery to particle assembly sites is essential for their replication. mRNA and Gag from the Ty1 retrotransposon colocalize in cytoplasmic foci, which are required for transposition and may be sites for virus-like particle (VLP) assembly. To determine which Ty1 components are required to form mRNA/Gag foci, localization studies were performed in a Ty1-less strain expressing galactose-inducible Ty1 plasmids (pGTy1) containing mutations in GAG or POL. Ty1 mRNA/Gag foci remained unaltered in mutants defective in Ty1 protease or deleted for POL. However, Ty1 mRNA containing a frameshift mutation (Ty1fs) that prevents the synthesis of all proteins accumulated in the nucleus. Ty1fs RNA showed a decrease in stability that was mediated by the cytoplasmic exosome, nonsense mediated decay, and the processing-body. Localization of Ty1fs RNA remained unchanged in an nmd2Δ mutant. When Gag and Ty1fs mRNA were expressed independently, Gag provided in trans increased Ty1fs RNA level and restored localization of Ty1fs RNA in cytoplasmic foci. Endogenously expressed Gag also localized to the nuclear periphery independent of RNA export. These results suggest that Gag is required for Ty1 mRNA stability, efficient nuclear export, and localization into cytoplasmic foci. PMID:22998189

  5. Development of Lunar Highland REgolith Simulants, NU-LHT-1M,-2M

    NASA Technical Reports Server (NTRS)

    Stoeser, D. B.; Wilson, S. A.; Fikes, J.; McLemore, C.; Rickman, Douglas

    2008-01-01

    As part of a collaborative agreement between the U.S, Geological Survey (USGS) and NASA's Marshall Space Flight Center (MSFC) lunar highland simulants are being produced to support engineers and scientists in developing the technologies required to put a base on the moon by 2024. Two simulants have been produced to date: NU-LHT-1M and -2M (NASA/USGS-Lunar Highlands Type-l & 2 Medium-grained). Using starting material chiefly collected from the Stillwater Mine, Nye, MT, blending protocols were developed based on normative mineralogy calculated from average chemistry, for the Apollo 16 regolith. New technologies using a high temperature remotely coupled plasma melter were developed to generate both high quality and agglutinitic glasses that simulate the glassy components of the regolith. Detailed chemical, mineralogical and physical properties analysis of NU-LHT-1M indicate that it is overall a good surrogate for highlands lunar regolith (our new simulant LHT-2M has not be analyzed yet). The primary difference between 1M and 2M was the inclusion of trace mineralogy (phosphates and sulfide). Plans will also be presented on the future direction of the simulant project.

  6. Berberine as a natural source inhibitor for mild steel in 1 M H 2SO 4

    NASA Astrophysics Data System (ADS)

    Li, Yan; Zhao, Peng; Liang, Qiang; Hou, Baorong

    2005-12-01

    Berberine was abstracted from coptis chinensis and its inhibition efficiency on corrosion of mild steel in 1 M H 2SO 4 was investigated through weight loss experiment, electrochemical techniques and scanning electronic microscope (SEM) with energy disperse spectrometer (EDS). The weight loss results showed that berberine is an excellent corrosion inhibitor for mild steel immersed in 1 M H 2SO 4. Potentiodynamic curves suggested that berberine suppressed both cathodic and anodic processes for its concentrations higher than 1.0 × 10 -4 M and mainly cathodic reaction was suppressed for lower concentrations. The Nyquist diagrams of impedance for mild steel in 1 M H 2SO 4 containing berberine with different concentrations showed one capacitive loop, and the polarization resistance increased with the inhibitor concentration rising. A good fit to Flory-Huggins isotherm was obtained between surface coverage degree and inhibitor concentration. The surface morphology and EDS analysis for mild steel specimens in sulfuric acid in the absence and presence of the inhibitor also proved the results obtained by the weight loss and electrochemical experiments. The correlation of inhibition effect and molecular structure of berberine was then discussed by quantum chemistry study.

  7. Detection of MDR1 mRNA expression with optimized gold nanoparticle beacon

    NASA Astrophysics Data System (ADS)

    Zhou, Qiumei; Qian, Zhiyu; Gu, Yueqing

    2016-03-01

    MDR1 (multidrug resistance gene) mRNA expression is a promising biomarker for the prediction of doxorubicin resistance in clinic. However, the traditional technical process in clinic is complicated and cannot perform the real-time detection mRNA in living single cells. In this study, the expression of MDR1 mRNA was analyzed based on optimized gold nanoparticle beacon in tumor cells. Firstly, gold nanoparticle (AuNP) was modified by thiol-PEG, and the MDR1 beacon sequence was screened and optimized using a BLAST bioinformatics strategy. Then, optimized MDR1 molecular beacons were characterized by transmission electron microscope, UV-vis and fluorescence spectroscopies. The cytotoxicity of MDR1 molecular beacon on L-02, K562 and K562/Adr cells were investigated by MTT assay, suggesting that MDR1 molecular beacon was low inherent cytotoxicity. Dark field microscope was used to investigate the cellular uptake of hDAuNP beacon assisted with ultrasound. Finally, laser scanning confocal microscope images showed that there was a significant difference in MDR1 mRNA expression in K562 and K562/Adr cells, which was consistent with the results of q-PCR measurement. In summary, optimized MDR1 molecular beacon designed in this study is a reliable strategy for detection MDR1 mRNA expression in living tumor cells, and will be a promising strategy for in guiding patient treatment and management in individualized medication.

  8. The seascape of demersal fish nursery areas in the North Mediterranean Sea, a first step towards the implementation of spatial planning for trawl fisheries.

    PubMed

    Colloca, Francesco; Garofalo, Germana; Bitetto, Isabella; Facchini, Maria Teresa; Grati, Fabio; Martiradonna, Angela; Mastrantonio, Gianluca; Nikolioudakis, Nikolaos; Ordinas, Francesc; Scarcella, Giuseppe; Tserpes, George; Tugores, M Pilar; Valavanis, Vasilis; Carlucci, Roberto; Fiorentino, Fabio; Follesa, Maria C; Iglesias, Magdalena; Knittweis, Leyla; Lefkaditou, Eugenia; Lembo, Giuseppe; Manfredi, Chiara; Massutí, Enric; Pace, Marie Louise; Papadopoulou, Nadia; Sartor, Paolo; Smith, Christopher J; Spedicato, Maria Teresa

    2015-01-01

    The identification of nursery grounds and other essential fish habitats of exploited stocks is a key requirement for the development of spatial conservation planning aimed at reducing the adverse impact of fishing on the exploited populations and ecosystems. The reduction in juvenile mortality is particularly relevant in the Mediterranean and is considered as one of the main prerequisites for the future sustainability of trawl fisheries. The distribution of nursery areas of 11 important commercial species of demersal fish and shellfish was analysed in the European Union Mediterranean waters using time series of bottom trawl survey data with the aim of identifying the most persistent recruitment areas. A high interspecific spatial overlap between nursery areas was mainly found along the shelf break of many different sectors of the Northern Mediterranean indicating a high potential for the implementation of conservation measures. Overlap of the nursery grounds with existing spatial fisheries management measures and trawl fisheries restricted areas was also investigated. Spatial analyses revealed considerable variation depending on species and associated habitat/depth preferences with increased protection seen in coastal nurseries and minimal protection seen for deeper nurseries (e.g. Parapenaeus longirostris 6%). This is partly attributed to existing environmental policy instruments (e.g. Habitats Directive and Mediterranean Regulation EC 1967/2006) aiming at minimising impacts on coastal priority habitats such as seagrass, coralligenous and maerl beds. The new knowledge on the distribution and persistence of demersal nurseries provided in this study can support the application of spatial conservation measures, such as the designation of no-take Marine Protected Areas in EU Mediterranean waters and their inclusion in a conservation network. The establishment of no-take zones will be consistent with the objectives of the Common Fisheries Policy applying the ecosystem

  9. Spatial overlap of Black-browed albatrosses with longline and trawl fisheries in the Patagonian Shelf during the non-breeding season

    NASA Astrophysics Data System (ADS)

    Copello, Sofía; Seco Pon, Juan Pablo; Favero, Marco

    2014-05-01

    Incidental mortality in fisheries is the main at-sea threat albatrosses are facing nowadays. In this study we used remote sensing techniques to model the degree of spatial overlapping between the Black-browed albatross (Thalassarche melanophris) and Argentine fisheries, assuming this as a proxy of risk for albatrosses. Eleven tags were deployed on albatrosses during the non-breeding seasons 2011 and 2012 in the Patagonian Shelf. Their distribution overlapped to different extents with the two coastal trawl, three offshore trawl and one demersal longline fisheries. The overlap index showed highest values with both coastal fleets, followed by the ice-chilling trawl fleet. These intersections were located in the Argentinean-Uruguayan Common Fishing Zone, in coastal areas of the SE of Buenos Aires province, El Rincón estuary and over the shelf break. The analysis of intersections of focal areas from albatrosses and all fisheries allowed the identification of thirty-four fishing management units (1° by 1° grid within the Argentine EEZ) classified as of medium, high or very high conservation priority. Very high priority units were placed between 35 and 38°S in the external mouth of Rio de la Plata, and between 45 and 47°S in neighboring waters East to the hake fishing closure. Although there were possible biases due to the limited number of tracked birds and the locations where albatrosses were captured and instrumented, the information presented in this study provides a comprehensive picture of important areas of overlapping during winter that could be used by the fishery administration to prioritize conservation actions under limited resource scenarios.

  10. The Seascape of Demersal Fish Nursery Areas in the North Mediterranean Sea, a First Step Towards the Implementation of Spatial Planning for Trawl Fisheries

    PubMed Central

    Colloca, Francesco; Garofalo, Germana; Bitetto, Isabella; Facchini, Maria Teresa; Grati, Fabio; Martiradonna, Angela; Mastrantonio, Gianluca; Nikolioudakis, Nikolaos; Ordinas, Francesc; Scarcella, Giuseppe; Tserpes, George; Tugores, M. Pilar; Valavanis, Vasilis; Carlucci, Roberto; Fiorentino, Fabio; Follesa, Maria C.; Iglesias, Magdalena; Knittweis, Leyla; Lefkaditou, Eugenia; Lembo, Giuseppe; Manfredi, Chiara; Massutí, Enric; Pace, Marie Louise; Papadopoulou, Nadia; Sartor, Paolo; Smith, Christopher J.; Spedicato, Maria Teresa

    2015-01-01

    The identification of nursery grounds and other essential fish habitats of exploited stocks is a key requirement for the development of spatial conservation planning aimed at reducing the adverse impact of fishing on the exploited populations and ecosystems. The reduction in juvenile mortality is particularly relevant in the Mediterranean and is considered as one of the main prerequisites for the future sustainability of trawl fisheries. The distribution of nursery areas of 11 important commercial species of demersal fish and shellfish was analysed in the European Union Mediterranean waters using time series of bottom trawl survey data with the aim of identifying the most persistent recruitment areas. A high interspecific spatial overlap between nursery areas was mainly found along the shelf break of many different sectors of the Northern Mediterranean indicating a high potential for the implementation of conservation measures. Overlap of the nursery grounds with existing spatial fisheries management measures and trawl fisheries restricted areas was also investigated. Spatial analyses revealed considerable variation depending on species and associated habitat/depth preferences with increased protection seen in coastal nurseries and minimal protection seen for deeper nurseries (e.g. Parapenaeus longirostris 6%). This is partly attributed to existing environmental policy instruments (e.g. Habitats Directive and Mediterranean Regulation EC 1967/2006) aiming at minimising impacts on coastal priority habitats such as seagrass, coralligenous and maerl beds. The new knowledge on the distribution and persistence of demersal nurseries provided in this study can support the application of spatial conservation measures, such as the designation of no-take Marine Protected Areas in EU Mediterranean waters and their inclusion in a conservation network. The establishment of no-take zones will be consistent with the objectives of the Common Fisheries Policy applying the ecosystem

  11. Defining trade-offs among conservation, profitability, and food security in the California current bottom-trawl fishery.

    PubMed

    Hilborn, Ray; Stewart, Ian J; Branch, Trevor A; Jensen, Olaf P

    2012-04-01

    Although it is recognized that marine wild-capture fisheries are an important source of food for much of the world, the cost of sustainable capture fisheries to species diversity is uncertain, and it is often questioned whether industrial fisheries can be managed sustainably. We evaluated the trade-off among sustainable food production, profitability, and conservation objectives in the groundfish bottom-trawl fishery off the U.S. West Coast, where depletion (i.e., reduction in abundance) of six rockfish species (Sebastes) is of particular concern. Trade-offs are inherent in this multispecies fishery because there is limited capacity to target species individually. From population models and catch of 34 stocks of bottom fish, we calculated the relation between harvest rate, long-term yield (i.e., total weight of fish caught), profit, and depletion of each species. In our models, annual ecosystem-wide yield from all 34 stocks was maximized with an overall 5.4% harvest rate, but profit was maximized at a 2.8% harvest rate. When we reduced harvest rates to the level (2.2% harvest rate) at which no stocks collapsed (<10% of unfished levels), biomass harvested was 76% of the maximum sustainable yield and profit 89% of maximum. A harvest rate under which no stocks fell below the biomass that produced maximum sustainable yield (1% harvest rate), resulted in 45% of potential yield and 67% of potential profit. Major reductions in catch in the late 1990s led to increase in the biomass of the most depleted stocks, but this rebuilding resulted in the loss of >30% of total sustainable yield, whereas yield lost from stock depletion was 3% of total sustainable yield. There are clear conservation benefits to lower harvest rates, but avoiding overfishing of all stocks in a multispecies fishery carries a substantial cost in terms of lost yield and profit. PMID:22443131

  12. Trawled megafaunal invertebrate assemblages from bathyal depth of the Mid-Atlantic Ridge (48°-54°N)

    NASA Astrophysics Data System (ADS)

    Alt, Claudia H. S.; Rogacheva, Antonina; Boorman, Benjamin; Alan Hughes, J.; Billett, David S. M.; Gooday, Andrew J.; Jones, Daniel O. B.

    2013-12-01

    We investigated the effects of contrasting surface primary production on the benthic invertebrate megafauna at four sites on the Mid-Atlantic Ridge. The sites, designated NW, NE, SW and SE, were located to the west and east of the Ridge axis and to the north and south of the Charlie-Gibbs Fracture Zone. Benthic megafauna were sampled in 2007 and 2009 with a semi-balloon otter trawl, at a target depth of 2,500 m. The total biomass and density of major taxonomic groups did not differ significantly between sites, despite those to the north being characterised by greater surface productivity than those to the south. However, the density and biomass of individual taxonomic groups, as well as diversity and body size, all showed significant differences between sites. Diversity was highest at the SE, and lowest at the NE site. Most species were larger to the north. Community composition was significantly different between all sites, with the greatest number of unique species found at the SE, and noticeably fewer unique species at the northern sites. There was no clear correlation between the surface productivity and community structure, suggesting complex ecological controls on the communities. It is speculated that, in addition to the energy supply, drivers such as strong currents and sediment characteristics, play an important role in shaping the communities at the different sites. To what extent the ridge acts as a dispersal barrier for benthic invertebrate fauna remains unclear. However, high numbers of species unique to the southern site suggest a limited dispersal between the northern and southern areas.

  13. Beam tuning

    SciTech Connect

    Pardo, R.C.; Zinkann, G.P.

    1995-08-01

    A program for configuring the linac, based on previously run configurations for any desired beam was used during the past year. This program uses only a small number of empirical tunes to scale resonator fields to properly accelerate a beam with a different charge-to-mass (q/A) ratio from the original tune configuration. The program worked very well for the PII linac section where we can easily match a new beam`s arrival phase and velocity to the tuned value. It was also fairly successful for the Booster and ATLAS sections of the linac, but not as successful as for the PII linac. Most of the problems are associated with setting the beam arrival time correctly for each major linac section. This problem is being addressed with the development of the capacitive pickup beam phase monitor discussed above. During the next year we expect to improve our ability to quickly configure the linac for new beams and reduce the time required for linac tuning. Already the time required for linac tuning as a percentage of research hours has decreased from 22% in FY 1993 to 15% in the first quarter of FY 1995.

  14. Low energy beam transport system developments

    NASA Astrophysics Data System (ADS)

    Dudnikov, V.; Han, B.; Stockli, M.; Welton, R.; Dudnikova, G.

    2015-04-01

    For high brightness beam production it is important to preserve the brightness in the low energy beam transport system (LEBT) used to transport and match the ion beams to the next stage of acceleration, usually an RFQ. While electrostatic focusing can be problematic for high current beam transport, reliable electrostatic LEBT operation has been demonstrated with H- beams up to 60 mA. Now, however, it is commonly accepted that an optimal LEBT for high current accelerator applications consists of focusing solenoids with space charge compensation. Two-solenoid LEBTs are successfully used for high current (>100 mA) proton beam transport. Preservation of low emittances (~0.15 π mm-mrad) requires the addition of a heavy gas (Xe, Kr), which causes ~5% of proton loss in a 1 m long LEBT. Similar Xe densities would be required to preserve low emittances of H- beams, but such gas densities cause unacceptably high H- beam losses. A short LEBT with only one short solenoid, movable for RFQ matching, can be used for reduced negative ion stripping. A strong electrostatic-focusing LEBT has been successfully adopted for transport of high current H- beams in the SNS Front End. Some modifications of such electrostatic LEBTs are expected to improve the reliable transport of intense positive and negative ion beams without greatly degrading their low emittances. We concentrate on processes that determine the beam brightness degradation and on their prevention. Proposed improvements to the SNS electrostatic LEBT are discussed.

  15. Dithranol downregulates expression of Id1 mRNA in human keratinocytes in vitro.

    PubMed

    Ronpirin, C; Tencomnao, T

    2012-01-01

    The precise causes of psoriasis, a chronic skin disorder characterized by hyperproliferation of keratinocytes and incomplete keratinization, are unclear. It is known that expression of helix-loop-helix transcription factor Id1, which functions as an inhibitor of differentiation, is upregulated in psoriatic skin. We investigated the effect of the antipsoriatic drug dithranol on mRNA and protein expression levels of Id1 in the HaCaT keratinocyte cell line. Cultured HaCaT cells were treated with 0-0.5 μg/mL dithranol for 30 min. After 2 and 4 h, total cellular RNA and total proteins were isolated from HaCaT cells, and quantitative real-time reverse transcriptase (RT-PCR) and Western blot were used to determine the mRNA and protein levels of Id1, respectively. Changes in normalized Id1 mRNA levels were observed only after 4 h of dithranol treatment. There was reduced expression of Id1 mRNA transcripts in the HaCaT cells treated with 0.1 μg/mL dithranol, but the reduction was not significant. The expression of Id1 mRNA was significantly downregulated (almost 50%) when 0.25 or 0.5 μg/mL dithranol was applied to the HaCaT cells. However, the normalized Id1 protein levels were not significantly affected. The molecular mechanisms underlying this finding should be investigated further to help determine the therapeutic action of this drug. PMID:23079823

  16. Northern Hemisphere storminess in the Norwegian Earth System Model (NorESM1-M)

    NASA Astrophysics Data System (ADS)

    Knudsen, E. M.; Walsh, J. E.

    2014-12-01

    Metrics of storm activity in Northern Hemisphere high- and midlatitudes are evaluated from historical output and future projections by the Norwegian Earth System Model (NorESM1-M) coupled global climate model. The European Re-Analysis Interim (ERA-Interim) and the Community Climate System Model (CCSM4), a global climate model of the same vintage as NorESM1-M, provide benchmarks for comparison. The focus is on the autumn and early winter (September through December), the period when the ongoing and projected Arctic sea ice retreat is greatest. Storm tracks derived from a vorticity-based algorithm for storm identification are reproduced well by NorESM1-M, although the tracks are somewhat better resolved in the higher-resolution ERA-Interim and CCSM4. The tracks are projected to shift polewards in the future as climate changes under the Representative Concentration Pathway (RCP) forcing scenarios. Cyclones are projected to become generally more intense in the high-latitudes, especially over the Alaskan region, although in some other areas the intensity is projected to decrease. While projected changes in track density are less coherent, there is a general tendency towards less frequent storms in midlatitudes and more frequent storms in high-latitudes, especially the Baffin Bay/Davis Strait region. Autumn precipitation is projected to increase significantly across the entire high-latitudes. Together with the projected increases in storm intensity and sea level and the loss of sea ice, this increase in precipitation implies a greater vulnerability to coastal flooding and erosion, especially in the Alaskan region. The projected changes in storm intensity and precipitation (as well as sea ice and sea level pressure) scale generally linearly with the RCP value of the forcing and with time through the 21st century.

  17. Alternative Forms of Y-Box Binding Protein 1 and YB-1 mRNA

    PubMed Central

    Lyabin, Dmitry N.; Doronin, Alexander N.; Eliseeva, Irina A.; Guens, Gelena P.; Kulakovskiy, Ivan V.; Ovchinnikov, Lev P.

    2014-01-01

    The multifunctional eukaryotic protein YB-1 (Y-box binding protein 1) plays a role in DNA reparation, transcription regulation, splicing, and mRNA translation, thereby participating in many crucial events in cells. Its effect is dependent mostly on its amount, and hence, on regulation of its synthesis. Published data on regulation of synthesis of YB-1 mediated by its mRNA 5′ UTR, and specifically on the 5′ UTR length and the presence of TOP-like motifs in this region, are contradictory. Here we report that 5′ UTRs of major forms of human, rabbit, and mouse YB-1 mRNAs are about 140 nucleotides long and contain no TOP-like motifs mentioned in the literature. Also, we have found that YB-1 specifically interacts with the 5′ UTR of its own mRNA within a region of about 100 nucleotides upstream from the start codon. Apart from YB-1, translation of YB-1 mRNA in a cell free system gives an additional product with an extended N-terminus and lower electrophoretic mobility. The start codon for synthesis of the additional product is AUC at position –(60–58) of the same open reading frame as that for the major product. Also, in the cell there is an alternative YB-1 mRNA with exon 1 replaced by a part of intron 1; YB-1 synthesized in vitro from this mRNA contains, instead of its N-terminal A/P domain, 10–11 amino acids encoded by intron 1. PMID:25116735

  18. Northern Hemisphere storminess in the Norwegian Earth System Model (NorESM1-M)

    NASA Astrophysics Data System (ADS)

    Knudsen, Erlend M.; Walsh, John E.

    2016-07-01

    Metrics of storm activity in Northern Hemisphere high and midlatitudes are evaluated from historical output and future projections by the Norwegian Earth System Model (NorESM1-M) coupled global climate model. The European Re-Analysis Interim (ERA-Interim) and the Community Climate System Model (CCSM4), a global climate model of the same vintage as NorESM1-M, provide benchmarks for comparison. The focus is on the autumn and early winter (September through December) - the period when the ongoing and projected Arctic sea ice retreat is the greatest. Storm tracks derived from a vorticity-based algorithm for storm identification are reproduced well by NorESM1-M, although the tracks are somewhat better resolved in the higher-resolution ERA-Interim and CCSM4. The tracks show indications of shifting polewards in the future as climate changes under the Representative Concentration Pathway (RCP) forcing scenarios. Cyclones are projected to become generally more intense in the high latitudes, especially over the Alaskan region, although in some other areas the intensity is projected to decrease. While projected changes in track density are less coherent, there is a general tendency towards less frequent storms in midlatitudes and more frequent storms in high latitudes, especially the Baffin Bay/Davis Strait region in September. Autumn precipitation is projected to increase significantly across the entire high latitudes. Together with the projected loss of sea ice and increases in storm intensity and sea level, this increase in precipitation implies a greater vulnerability to coastal flooding and erosion, especially in the Alaskan region. The projected changes in storm intensity and precipitation (as well as sea ice and sea level pressure) scale generally linearly with the RCP value of the forcing and with time through the 21st century.

  19. Circulating cell-free DNA indicates M1/M2 responses during septic peritonitis.

    PubMed

    Xin, Yi; Gao, Xingjuan; Wang, Wenxiao; Xu, Xiaojuan; Yu, Lijuan; Ju, Xiuli; Li, Aimin

    2016-09-01

    Circulating cell-free DNA (cfDNA) has been widely suggested as clinical indicator in diseases, including sepsis. It was thought that the cfDNA was coming from the cell lysis, necrosis and apoptosis caused by tissue damages during sepsis. M1 or M2 macrophage-type responses kill or repair in vivo, which is highly relevant with the tissue damages in sepsis. The correlation between cfDNA and M1/M2 responses during sepsis was never investigated. Here, we used bacteria injection induced septic peritonitis mouse model in both M1-dominant C57bl/6 and M2-dominant Balb/c mouse strains. We found that M2-dominant Balb/c mice showed better prognosis of septic peritonitis than C57bl/6 mice, which is corresponded with lower level of cfDNA in septic Balb/c mice compared to septic C57bl/6 mice. By assessing the M1 and M2 related cytokines in both septic Balb/c and C57bl/6 mice, we found out that Balb/c mice has lower tumor necrosis factor α (TNFα) and higher interleukin 10 (IL-10) productions than C57bl/6 mice during septic peritonitis. Especially, when monitoring the monocyte subtypes in peripheral blood of these septic mice, we found out that C57bl/6 showed higher inflammatory (Ly6C(high)) monocyte (corresponding to M1 macrophage) proportion than Balb/c mice. Interestingly, we find out that cfDNA is highly correlated with the ratio of Ly6C(high) monocytes versus Ly6C(low) monocytes, which represents M1/M2 (killing/healing) responses. Our study suggested that the cfDNA is a good indicator for evaluating M1/M2 responses in septic peritonitis. PMID:27335257

  20. Calibration of an astrophysical spectrograph below 1 m/s using a laser frequency comb

    NASA Astrophysics Data System (ADS)

    Phillips, David F.; Glenday, Alexander G.; Li, Chih-Hao; Cramer, Claire; Furesz, Gabor; Chang, Guoqing; Benedick, Andrew J.; Chen, Li-Jin; Kärtner, Franz X.; Korzennik, Sylvain; Sasselov, Dimitar; Szentgyorgyi, Andrew; Walsworth, Ronald L.

    2012-06-01

    We deployed two wavelength calibrators based on laser frequency combs ("astro-combs") at an astronomical telescope. One astro-comb operated over a 100 nm band in the deep red (∼ 800 nm) and a second operated over a 20 nm band in the blue (∼ 400 nm). We used these red and blue astro-combs to calibrate a high-resolution astrophysical spectrograph integrated with a 1.5 m telescope, and demonstrated calibration precision and stability suffici ent to enable detection of changes in stellar radial velocity < 1 m/s.

  1. Operation of the 8-T, 1-m-diameter test facility at Lawrence Livermore National Laboratory

    SciTech Connect

    Zbasnik, J.P.; Cornish, D.N.; Scanlan, R.M.; Leber, R.L.; Chaplin, M.R.; Rosdahl, A.R.; Johnston, J.E.

    1981-03-20

    The High-Field Test Facility (HFTF) being built at Lawrence Livermore National Laboratory (LLNL) consists of a set of four Nb-Ti coils, inside of which there is a pair of multifilamentary Nb/sub 3/Sn coils. The outer coils are designed to generate 8 T in the 1-m bore; the Nb/sub 3/Sn coils will boost this to 12 T in a 40-cm bore. This paper describes the first operation of the complete set of Nb-Ti coils and describes and gives results from the data acquisition and analysis system that was used during the test.

  2. Calibration of an astrophysical spectrograph below 1 m/s using a laser frequency comb.

    PubMed

    Phillips, David F; Glenday, Alexander G; Li, Chih-Hao; Cramer, Claire; Furesz, Gabor; Chang, Guoqing; Benedick, Andrew J; Chen, Li-Jin; Kärtner, Franz X; Korzennik, Sylvain; Sasselov, Dimitar; Szentgyorgyi, Andrew; Walsworth, Ronald L

    2012-06-18

    We deployed two wavelength calibrators based on laser frequency combs ("astro-combs") at an astronomical telescope. One astro-comb operated over a 100 nm band in the deep red (∼ 800 nm) and a second operated over a 20 nm band in the blue (∼ 400 nm). We used these red and blue astro-combs to calibrate a high-resolution astrophysical spectrograph integrated with a 1.5 m telescope, and demonstrated calibration precision and stability sufficient to enable detection of changes in stellar radial velocity < 1 m/s. PMID:22714437

  3. NeuralWISP: A Wirelessly Powered Neural Interface With 1-m Range.

    PubMed

    Yeager, D J; Holleman, J; Prasad, R; Smith, J R; Otis, B P

    2009-12-01

    We present the NeuralWISP, a wireless neural interface operating from far-field radio-frequency RF energy. The NeuralWISP is compatible with commercial RF identification readers and operates at a range up to 1 m. It includes a custom low-noise, low-power amplifier integrated circuit for processing the neural signal and an analog spike detection circuit for reducing digital computational requirements and communications bandwidth. Our system monitors the neural signal and periodically transmits the spike density in a user-programmable time window. The entire system draws an average 20 muA from the harvested 1.8-V supply. PMID:23853285

  4. Optomechanical analysis of a 1-m light-weight mirror system

    NASA Astrophysics Data System (ADS)

    Kihm, Hagyong; Yang, Ho-Soon; Lee, Yun-Woo

    2013-05-01

    We present the optomechanical analysis results for a 1-m light-weight mirror system for a space telescope. The mirror has partially-closed pockets at the back surface and three square bosses at the rim for flexure mounting. The mirror design is optimized to satisfy the performance requirements under launch loads and a space environment. Mirror surface distortions due to gravity, assembly, isothermal loads, and moisture absorption are investigated. Mechanical safety issues such as mirror fracture, flexure yielding, and adhesive breakage are also examined.

  5. New corrosion inhibitor acrylamide methyl ether for mild steel in 1 M HCl

    NASA Astrophysics Data System (ADS)

    Ma, Xinyu; Jiang, Xiaohui; Xia, Shuwei; Shan, Mingli; Li, Xia; Yu, Liangmin; Tang, Qunwei

    2016-05-01

    Pursuit of good inhibition performance has been a persistent objective for advanced inhibitor industry. Here we demonstrate the experimental realization of a new corrosion inhibitor acrylamide methyl ether (AAME) from N-Methylol acrylamide (N-MAM) for mild steel in 1 M HCl. The resultant adsorption films have inhibition efficiency as high as 96.2%. Moreover, a theoretical investigation is also launched to demonstrate the potential mechanism behind the promising corrosion behaviors. This work represents a significant step forward, as it demonstrates how to make scalable AAME inhibitors as well as to enhance inhibition performances for high-efficiency and cost-effective corrosion inhibition platforms.

  6. Corrosion Inhibition and Adsorption Behavior of Setaria verticillata Leaf Extract in 1M Sulphuric Acid

    NASA Astrophysics Data System (ADS)

    Muthukrishnan, P.; Jeyaprabha, B.; Prakash, P.

    2013-12-01

    Setaria verticillata leaf extract (SVLE) as corrosion inhibitor in 1M H2SO4 was investigated by weight loss techniques and electrochemical techniques at 308-328 K. Inhibition efficiency of SVLE was found to increase with increasing concentration but decreased with temperature. Polarization measurements revealed that SVLE acted as mixed-type inhibitor. Impedance diagrams showed that increasing of SVLE concentration increased charge transfer resistance and decreased double layer capacitance. The adsorption of SVLE on the mild surface obeyed the Langmuir adsorption isotherm. Protective film formation against corrosion was confirmed by SEM and FTIR.

  7. Polars Observed with SDSS, CRTS, and McDonald Observatory 2.1-m

    NASA Astrophysics Data System (ADS)

    Santana, Joshua; Mason, Paul A.

    2016-01-01

    We present first results of a program to characterize magnetic CVs, mostly polars,using the Sloan Digital Sky Survey (SDSS) and the Catalina Real-Time Transient Survey (CRTS). We find that while it is difficult to predict what state a particular binary will be in, the duty cycle between optical high and low states of polars remains stable over multi-year time-scales. We suggest that polars lie along a sequence of long-term light curve behavior, from rarely high to rarely low. High speed photometry of polars from the 2.1-m telescope of McDonald Observatory is also presented.

  8. Beam-beam deflection and signature curves for elliptic beams

    SciTech Connect

    Ziemann, V.

    1990-10-22

    In this note we will present closed expressions for the beam-beam deflection angle for arbitrary elliptic beams including tilt. From these expressions signature curves, i.e., systematic deviations from the round beam deflection curve due to ellipticity or tilt are derived. In the course of the presentation we will prove that it is generally impossible to infer individual beam sizes from beam-beam deflection scans. 3 refs., 2 figs.

  9. Prolonged Pseudohypoxia Targets Ambra1 mRNA to P-Bodies for Translational Repression

    PubMed Central

    Merlo, Paola; Rizza, Salvatore; D’Amico, Silvia; Cecconi, Francesco

    2015-01-01

    Hypoxia has been associated with several pathological conditions ranging from stroke to cancer. This condition results in the activation of autophagy, a cyto-protective response involving the formation of double-membraned structures, the autophagosomes, in the cytoplasm. In this study, we investigated the cellular mechanisms regulating the autophagy gene Ambra1, after exposure to a hypoxia mimetic, cobalt chloride (CoCl2). We observed that, upon CoCl2 administration, activation of the apoptotic machinery was concomitant with down-regulation of the pro-autophagic factor Ambra1, without affecting transcription. Additionally, co-treating the cells with the caspase inhibitor z-VAD-FMK did not restore Ambra1 protein levels, this implying the involvement of other regulatory mechanisms. Partial re-localization of Ambra1 mRNA to non-translating fractions and cytoplasmic P-bodies was further detected. Thus, in this pseudohypoxic context, Ambra1 mRNA translocation to P-bodies and translational suppression correlated with increased cell death. PMID:26086269

  10. A Study on Helium Glow Discharge Cleaning in the HL-1M Tokamak

    NASA Astrophysics Data System (ADS)

    Wang, Zhi-wen; Yan, Dong-hai; Wang, En-yao

    2002-12-01

    Based on the principle of ion-bombarded reemission and sputtering desorption, the Glow Discharge Cleaning with helium (GDC(He)) is an effective method for controlling the recycle of H on the chamber wall, Carbon (C), Oxygen (O) impurity and improving the wall conditioning in HL-1M tokamak. It is characterized by simplicity without magnet and safety, compared with Taylor Discharge Cleaning (TDC), Alternating current glow discharge Cleaning (AC), Electron Cyclotron Resonance-Discharge Cleaning (ECR-DC). Compared with bake-out degassing, the wall has a higher degassing rate during GDC(He) and a lower impurity concentration in vacuum chambers after GDC(He). Cleaning patterns have been developed dominantly for de-oxidization, decarbonization and de-hydrogenization. The cleaning parameters for H recycle on the wall are also presented. This paper mainly describes the GDC system along with its parameters, breakdown voltage, volt-ampere characteristic, the range of operation safe and suitable cleaning patterns in the HL-1M tokamak, finally concluding with some suggestions on HL-2A GDC.

  11. Regulation of CYP27B1 mRNA Expression in Primary Human Osteoblasts.

    PubMed

    van der Meijden, K; van Essen, H W; Bloemers, F W; Schulten, E A J M; Lips, P; Bravenboer, N

    2016-08-01

    The enzyme 1α-hydroxylase (gene CYP27B1) catalyzes the synthesis of 1,25(OH)2D in both renal and bone cells. While renal 1α-hydroxylase is tightly regulated by hormones and 1,25(OH)2D itself, the regulation of 1α-hydroxylase in bone cells is poorly understood. The aim of this study was to investigate in a primary human osteoblast culture whether parathyroid hormone (PTH), fibroblast growth factor 23 (FGF23), calcitonin, calcium, phosphate, or MEPE affect mRNA levels of CYP27B1. Our results show that primary human osteoblasts in the presence of high calcium concentrations increase their CYP27B1 mRNA levels by 1.3-fold. CYP27B1 mRNA levels were not affected by PTH1-34, rhFGF23, calcitonin, phosphate, and rhMEPE. Our results suggest that the regulation of bone 1α-hydroxylase is different from renal 1α-hydroxylase. High calcium concentrations in bone may result in an increased local synthesis of 1,25(OH)2D leading to an enhanced matrix mineralization. In this way, the local synthesis of 1,25(OH)2D may contribute to the stimulatory effect of calcium on matrix mineralization. PMID:27016371

  12. Soil map of the Russian Arctic on a 1 : 1 M scale: Contents and compilation methods

    NASA Astrophysics Data System (ADS)

    Mikhailov, I. S.

    2016-04-01

    A new soil map of the Russian Arctic on a scale of 1 : 1 M shows the soil cover in the north of Eurasia and on the islands of the Arctic Ocean to the north of 68° N. This map has been developed in a geoinformation system in the vector format with the wide use of remote sensing data. The delineated soil polygons show dominant and accompanying soils and the structure of soil cover patterns with indication of soil associations and soil complexes, the character of parent materials, and the topographic conditions. The map of the soil-geographic zoning of the Russian Arctic developed on the basis of the soil map differs from its earlier analogues in a greater degree of detail. The soil map of the Russian Arctic on a scale of 1 : 1 M displays the most detailed information on the soil cover patterns and can be used for solving various problems related to the exploration and development of this territory. Soil names from the new classification system of Russian soils [10] have been introduced into the legend of the map. New soil information and the use of remote sensing data have made it possible to enlarge the number of soil polygons shown on the map and to correct their boundaries in comparison with previous soil maps of the Russian Arctic.

  13. Optimization design and simulation analysis for the key components of 1m aperture photoelectric theodolite

    NASA Astrophysics Data System (ADS)

    San, Xiao-gang; Qiao, Yan-feng; Yu, Shuaibei; Wang, Tao; Tang, Jie

    2014-09-01

    Taking a 1m aperture photoelectric theodolite as study object, its key components including four-way, turntable and base are structural optimized so as to improve structural rigidity while reducing structural mass. First, various components' working characteristics and relationships with the other parts are studied, based on these, reasonable finite element model of these components are established, then each component's optimal material topology are obtained by continuum topology optimization. According to structural topology, lightweight truss structure models are constructed and the models' key parameters are optimized in size. Finally, the structures optimized are verified by finite element analysis. Analysis prove that comparing to traditional structure, lightweight structures of theodolite's three key components can reduce mass up to 1095.2kg, and increase ratio of stiffness to mass. Meanwhile, for other indexes such as maximum stress, static deformation and first-order natural frequency, lightweight structures also have better performance than traditional structure. After alignment, angular shaking error of theodolite's horizontal axis is tested by autocollimator, the results are: maximum error is υ =1.82″, mean square error is σ =0.62″. Further, angular shaking error of theodolite's vertical axis is tested by 0.2″ gradienter, the results are: maximum error is υ =1.97″, mean square error is σ =0.706″. The results of all these analysis and tests fully prove that the optimized lightweight key components of this 1m aperture theodolite are reasonable and effective to satisfy this instrument's requirements.

  14. Bathyal demersal fishes of Charlie Gibbs Fracture Zone region (49-54°N) of the Mid-Atlantic Ridge, I: Results from trawl surveys

    NASA Astrophysics Data System (ADS)

    Cousins, Nicola J.; Shields, Mark A.; Crockard, Deborah; Priede, Imants G.

    2013-12-01

    Demersal fishes were sampled by single-warp otter trawl (OTSB) at three sites on the Mid-Atlantic Ridge (MAR), to the northeast (NE), northwest (NW) and southeast (SE) of the Charlie-Gibbs Fracture Zone at approximately 2500 m depth. The mean abundance was 4109 fish km-2 (SD 3714) and biomass 897.1 kg km-2 (SD 842.9) compared with 1996 fish km-2 (SD 1497) and 721.2 kg km-2 (SD 387) at the same depth on the Porcupine Seabight (PSB) segment of the NE Atlantic Ocean margin from previous studies. There was no significant difference in biomass or abundance between the three sites on the MAR, nor in comparison with the ocean margin. A total of fish 22 species were recorded at the three MAR sites with evidence of highest species richness at the SE site. No unique species were found on the ridge; but there were differences in species composition between the PSB and the MAR. Coryphaenoides brevibarbis and Antimora rostrata were important at both the NE and NW trawl sites on the MAR whereas Halosauropsis macrochir was most important in the SE. We conclude that the MAR is an important habitat for species otherwise confined to narrow strips of appropriate depth around the North Atlantic Ocean margins. The MAR supports similar population densities to ocean margin settings but with differences in relative importance of different species between regions.

  15. Propagation of realistic beams in underdense plasma

    SciTech Connect

    Hinkel, D.E.; Williams, E.A.; Berger, R.L.; Powers, L.V.; Langdon, A.B.; Still, C.H.

    1997-11-10

    The effect of beam structure on propagation through underdense plasma is examined in two different examples. First, it is shown that the distribution of intensities within a laser beam affects how the beam deflects in the presence of transverse plasma flow. A detailed analysis of beam deflection shows that the rate scales linearly with intensity and plasma density, and inversely with plasma temperature. When the plasma flow is subsonic, the deflection rate is proportional to the ion damping decrement, and scales as M/(1 - M{sup 2}){sup 3/2}, where M is the transverse flow Mach number. When the plasma flow is supersonic, the deflection rate scales as 1/[M(M{sup 2} - 1){sup 1/2}]. Next, the effect of beam structure on channel formation by very intense laser beer is studied. A diffraction-limited beam with 40 TW of input power forms a channel through 4OOpm of plasma, whereas when this beam is phase aberrated, channel formation does not occur.

  16. Cooperation between scientists, NGOs and industry in support of sustainable fisheries: the South African hake Merluccius spp. trawl fishery experience.

    PubMed

    Field, J G; Attwood, C G; Jarre, A; Sink, K; Atkinson, L J; Petersen, S

    2013-10-01

    This paper examines the increasingly close interaction between natural and social scientists, non-governmental organizations (NGO) and industry, in pursuit of responsible ecosystem-based management of fisheries. South Africa has committed to implementing an ecosystem approach to fisheries management. Management advice stems from multi-stakeholder representation on government-led scientific and management working groups. In the hake Merluccius capensis and Merluccius paradoxus fishery, the primary management measure is an annual total allowable catch (TAC), the level of which is calculated using a management procedure (MP) that is revised approximately every 4 years. Revision of the MP is a consultative process involving most stakeholders, and is based on simulation modelling of projected probable scenarios of resource and fishery dynamics under various management options. NGOs, such as the Worldwide Fund for Nature in South Africa (WWF-SA), have played an important role in influencing consumers, the fishing industry and government to develop responsible fishing practices that minimize damage to marine ecosystems. Cooperation between industry, government and scientists has helped to improve sustainability and facilitated the meeting of market-based incentives for more responsible fisheries. Research includes ecosystem modelling, spatial analysis and ecosystem risk assessment with increasing research focus on social and economic aspects of the fishery. A four-year cooperative experiment to quantify the effect of trawling on benthic community structure is being planned. The food requirements of top predators still need to be included in the TAC-setting formulae and more social and economic research is needed. This paper also demonstrates how NGO initiatives such as Marine Stewardship Council certification and the Southern African Sustainable Seafood Initiative, a traffic light system of classifying seafood for consumers, have contributed to responsible fishing

  17. Oestradiol reduces Liver Receptor Homolog-1 mRNA transcript stability in breast cancer cell lines

    SciTech Connect

    Lazarus, Kyren A.; Zhao, Zhe; Knower, Kevin C.; To, Sarah Q.; Chand, Ashwini L.; Clyne, Colin D.

    2013-08-30

    Highlights: •LRH-1 is an orphan nuclear receptor that regulates tumor proliferation. •In breast cancer, high mRNA expression is associated with ER+ status. •In ER−ve cells, despite very low mRNA, we found abundant LRH-1 protein. •Our data show distinctly different LRH-1 protein isoforms in ER− and ER+ breast cancer cells. •This is due to differences in LRH-1 mRNA and protein stability rates. -- Abstract: The expression of orphan nuclear receptor Liver Receptor Homolog-1 (LRH-1) is elevated in breast cancer and promotes proliferation, migration and invasion in vitro. LRH-1 expression is regulated by oestrogen (E{sub 2}), with LRH-1 mRNA transcript levels higher in oestrogen receptor α (ERα) positive (ER+) breast cancer cells compared to ER− cells. However, the presence of LRH-1 protein in ER− cells suggests discordance between mRNA transcript levels and protein expression. To understand this, we investigated the impact of mRNA and protein stability in determining LRH-1 protein levels in breast cancer cells. LRH-1 transcript levels were significantly higher in ER+ versus ER− breast cancer cells lines; however LRH-1 protein was expressed at similar levels. We found LRH-1 mRNA and protein was more stable in ER− compared to ER+ cell lines. The tumor-specific LRH-1 variant isoform, LRH-1v4, which is highly responsive to E{sub 2}, showed increased mRNA stability in ER− versus ER+ cells. In addition, in MCF-7 and T47-D cell lines, LRH-1 total mRNA stability was reduced with E{sub 2} treatment, this effect mediated by ERα. Our data demonstrates that in ER− cells, increased mRNA and protein stability contribute to the abundant protein expression levels. Expression and immunolocalisation of LRH-1 in ER− cells as well as ER− tumors suggests a possible role in the development of ER− tumors. The modulation of LRH-1 bioactivity may therefore be beneficial as a treatment option in both ER− and ER+ breast cancer.

  18. LEDA and APT beam diagnostics instrumentation

    SciTech Connect

    Gilpatrick, J.D.; Johnson, K.F.; Hodapp, T.R.

    1997-10-01

    A 20-MeV 100-mA-cw proton-accelerator, Low Energy Demonstration Accelerator (LEDA), is presently being developed, fabricated, and tested at Los Alamos National Laboratory (LANL). The beam diagnostic instrumentation for LEDA and the final 1700-GeV Accelerator Production of Tritium (APT) are classified into two categories: operation and characterization instrumentation. The operational instrumentation does not intercept or minimally-intercepts the beam and are sufficiently prompt and robust to provide accurate information to the operators and commissioners during full-current cw beam operation. The characterization instrumentation, primarily utilized during commissioning project-phases, operates under more traditional 100-mA-peak and approximately 0.1-mA-average beam-current conditions. This paper will review some of the LEDA and APT operational beam diagnostic instrumentation.

  19. 1 mJ single-rod fiber Er:glass laser for rangefinding

    NASA Astrophysics Data System (ADS)

    Mak, Andrey A.; Polyakov, Vadim M.; Vitkin, Vladimir V.; Kharitonov, Artem A.; Buchenkov, Vyacheslav A.; Rodionov, Andrey Y.; Alekseeva, Irina P.; Dymshits, Olga S.; Zhilin, Alexander A.

    2015-02-01

    We demonstrate a compact Er:glass single-rod fiber laser for rangefinding with 1 mJ energy Q-switched at 1.54μm. Double-pass pumping with 16 W power and 5 ms pulse duration was used. Active medium was enveloped with diffuse reflector. Thus efficient output power operation achieved. Free-running mode output pulse energy was 12 mJ with a slope efficiency of 16%. Transparent glass-ceramics containing Co2+:MgAl2O4 nanocrystals were selected as the optimal passive gate to ensure Q-switching in a temperature range and transverse mode selection. The Q-switch mode had steady operation at 1 Hz repetition rate with thermal effects playing no visible role.

  20. On the threshold electric field for the @1-m auroral irregularity appearance

    SciTech Connect

    Kustov, A.; Uspensky, M. ); Kangas, J.; Huuskonen, A. ); Nielsen, E. )

    1989-09-01

    The authors study the electric field threshold for 1-m auroral electrojet irregularity excitation, using data from the special Finnish EISCAT experiment held on November 17, 1983. They found that at times irregularities can arise when the ionospheric electric field is 5-15 mV/m, i.e., well below the Farley-Buneman instability threshold. The electron density fluctuations derived here are increased when the E field becomes more than 15 mV/m. As a result the dependence of electron density fluctuation amplitude on electric fields has a kind of a soft E field threshold. Possible reasons for such a dependence are discussed. They show that unresolved ionospheric microstructure in the radar scattering volume can cause this threshold spreading.

  1. CCRL2 regulates M1/M2 polarization during EAE recovery phase.

    PubMed

    Mazzon, Cristina; Zanotti, Lucia; Wang, Li; Del Prete, Annalisa; Fontana, Elena; Salvi, Valentina; Poliani, Pietro Luigi; Sozzani, Silvano

    2016-06-01

    Chemokine (CC motif) receptor-like 2 is a 7-transmembrane protein related to the family of the atypical chemokine receptors, which are proteins devoid of chemotactic activity and involved in the control of inflammation. Experimental autoimmune encephalitis is an autoimmune disorder that replicates the inflammatory aspects of multiple sclerosis. Chemokine (CC motif) receptor-like 2-deficient mice developed exacerbated, nonresolving disease with protracted inflammatory response and increased demyelination. The increased severity of the disease was associated with higher levels of microglia/macrophage activation markers and imbalanced M1/M2 polarization. Thus, chemokine (CC motif) receptor-like 2 is involved in the downregulation of central nervous system-associated experimental autoimmune encephalitis inflammation in the recovery phase of the disease. Therefore chemokine (CC motif) receptor-like 2 should be considered to be a molecule involved in the regulation of the inflammatory response associated with multiple sclerosis. PMID:26744451

  2. The 0.1m subsonic cryogenic tunnel at the University of Southampton

    NASA Technical Reports Server (NTRS)

    Goodyer, M. J.

    1978-01-01

    The design and performance of a low speed one atmosphere cryogenic wind tunnel is described. The tunnel is fan driven and operates over the temperature range 305K to 77K at Mach numbers up to 0.28. It is cooled by the injection and evaporation of liquid nitrogen in the circuit, and the usual test gas is nitrogen. The tunnel has a square test section 0.1m across and was built to allow, at low costs, the development of testing techniques and the development of instrumentation for use in cryogenic tunnels, and to exploit in general instrumentation work the unusuallly wide range of unit Reynolds number available in such tunnels. The tunnel was first used in the development of surface flow visualization techniques for use at cryogenic temperatures.

  3. IR CMOS: the digital nightvision solution to sub-1 mLux imaging

    NASA Astrophysics Data System (ADS)

    Pralle, M. U.; Carey, J. E.; Vineis, C.; Palsule, C.; Jiang, J.; Joy, T.

    2015-05-01

    SiOnyx has demonstrated imaging at light levels below 1 mLux at 60 FPS with a 720P CMOS image sensor in a compact, low latency camera. The camera contains a 1 inch (16 mm) optical format sensor and streams uncompressed video over CameraLink with row wise image latency below 1 msec. Sub mLux imaging is enabled by the combination of enhanced quantum efficiency in the near infrared together with state of the art low noise image sensor design. The quantum efficiency enhancement is achieved by utilizing SiOnyx's proprietary ultrafast laser semiconductor processing technology that enhances the absorption of light within a thin pixel layer. Our technology demonstrates a 10 fold improvement in infrared sensitivity over incumbent imaging technology while maintaining complete compatibility with standard CMOS image sensor process flows. Applications include surveillance, nightvision, and 1064nm laser see-spot.

  4. The luminosity function of cluster galaxies: relations among M_1_, M^*^ and the morphological type.

    NASA Astrophysics Data System (ADS)

    Trevese, D.; Cirimele, G.; Appodia, B.

    1996-11-01

    A study of the luminosity function of 36 Abell clusters of galaxies has been carried out using photographic plates obtained with the Palomar 1.2 m Schmidt telescope. The relation between the magnitude M_1_ of the brightest cluster member and the Schechter function parameter M^*^ has been analyzed. A positive correlation between M^*^ and M_1_ is found. However clusters appear segregated in the M_1_-M^*^ plane according to their Rood & Sastry class in such a way that on average M_1_ becomes brighter while M^*^ becomes fainter going from late to early Rood & Sastry and also Bautz & Morgan classes. Also a partial correlation analysis involving the magnitude M_10_ of the 10th brightest galaxy, shows a negative intrinsic correlation between M_1_ and M^*^. These results agree with the cannibalism model for the formation of brightest cluster members, and provide new constraints for theories of cluster formation and evolution.

  5. Quench characteristics of 1-m-long SSC model dipole magnets

    SciTech Connect

    Hosoyama, K.; Kabe, A.; Hara, K.; Nakai, H.

    1996-12-31

    A series of fifteen 5-cm-aperture, 1-m-long SSC model dipole magnets with various types of end design and cable have been designed and fabricated at National Laboratory for High Energy Physics (KEK). The ramp-rate-dependent quench tests of the magnets KEKNo.3 to No.15 were performed in a 4.2-K vertical cryostat. A ramp-rate-dependent test of the magnet KEKNo.6 was also performed in 1.7-K pressurized superfluid helium. Special ramp tests so called {open_quotes}heating{close_quotes} and {open_quotes}cooling{close_quotes} experiments were also performed on the magnet KEKNo.10, as well as heat induced quench tests using the spot heaters installed in midplane of inner coils of the magnets KEKNo.7 and No.15 and in the splice part of the magnet KEKNo.13Y.

  6. EWS represses cofilin 1 expression by inducing nuclear retention of cofilin 1 mRNA.

    PubMed

    Huang, L; Kuwahara, I; Matsumoto, K

    2014-06-01

    In Ewing's sarcoma family tumors (ESFTs), the proto-oncogene EWS that encodes an RNA-binding protein is fused by chromosomal translocation to the gene encoding one of the E-twenty six (ETS) family of transcription factors, most commonly friend leukemia virus integration 1 (FLI-1). Although EWS/FLI-1 chimeric proteins are necessary for carcinogenesis, additional events seem to be required for transformation to occur. We have previously reported that a protein product of an EWS mRNA target, whose expression is negatively regulated by EWS but not by EWS/FLI-1, contributes to ESFT development. However, the mechanism by which EWS represses protein expression remains to be elucidated. Here, we report that overexpression of full-length EWS repressed protein expression and induced nuclear retention of reporter mRNAs in a tethering assay. In contrast, when a mutant lacking the EWS C-terminal nuclear localization signal (classified as a PY-NLS) was expressed, reporter protein expression was upregulated, and the number of cells exporting reporter mRNA to the cytoplasm increased. EWS binds to the 3'-untranslated region in another mRNA target, cofilin 1 (CFL1), and negatively regulates the expression of CFL1. Overexpression of EWS induced nuclear retention of CFL1 mRNA. Furthermore, ESFT cell proliferation and metastatic potential were suppressed by small interfering RNA-mediated CFL1 knockdown. Together, our findings suggest that EWS induces nuclear retention of CFL1 mRNA, thereby suppressing expression of CFL1, and that CFL1 promotes development of ESFT. Targeting CFL1 might therefore provide another novel approach for treatment of this aggressive disease. PMID:23831569

  7. Anthocyanin effects on microglia M1/M2 phenotype: Consequence on neuronal fractalkine expression.

    PubMed

    Meireles, Manuela; Marques, Cláudia; Norberto, Sónia; Santos, Paulo; Fernandes, Iva; Mateus, Nuno; Faria, Ana; Calhau, Conceição

    2016-05-15

    Microglia mediate multiple aspects of neuroinflammation, including cytotoxicity, repair, regeneration, and immunosuppression due to their ability to acquire diverse activation states, or phenotypes. Modulation of microglial phenotype or microglia-neuron crosstalk can be an appealing neurotherapeutic strategy. Anthocyanins are a class of flavonoids found e.g., in berries that has been attracting interest due to its neuroprotective potential. However, there are no data clarifying the impact of anthocyanins on microglial phenotype or on microglia-neuron crosstalk (CX3CR1/CX3CL1). N9 microglia cell line was treated with 1μM cyanidin (Cy), cyanidin-3-glucose (Cy3glc) and a methylated form of cyanidin-3-glucose (Met-Cy3glc) in basal conditions and with LPS/IL-4 stimulation. SH-SY5Y cell line was treated with the conditioned medium of microglia and with the anthocyanins alone. At basal conditions, microglia treatment with anthocyanins for 24h induced a less pro-inflammatory profile. Decreased TNF-α mRNA expression was induced either by Cy and Met-Cy3glc. LPS markedly increase IL-6 mRNA expression, which was lowered by Cy3glc. IL-1β LPS-induced expression was reverted by Cy. Cy increased CX3CL1 mRNA expression in SH-SY5Y comparing either with control or LPS. Anthocyanins and metabolites were not able to shift microglia to an M2 strict phenotype however they did interact with microglia biology. There was an attenuation of M1 phenotype and increase of neuronal expression of CX3CL1 mRNA. Understanding how flavonoids modulate microglia-neuron crosstalk can open new directions for future nutritional interventions. PMID:26965567

  8. Beam loss

    NASA Astrophysics Data System (ADS)

    VanGinneken, A.; Edwards, D.; Harrison, M.

    1989-04-01

    This paper presents results from simulations of beam losses during the operation of a superconducting accelerator. The calculations use a combination of hadron/electromagnetic cascade plus elastic scattering codes with accelerator tracking routines. These calculations have been used in conjunction with the design of the Fermilab Tevatron. First accelerator geometry is described. The rest of the paper discusses a detailed attempt to simulate a fast extraction cycle, essentially in chronological order. Beginning with an unperturbed beam, the simulation generates proton phase-space distributions incident on the electrostatic septum. These interact either elastically or inelastically with the septum wires, and the products of these interactions are traced through the machine. Where these leave the accelerator, energy deposition levels in the magnets are calculated together with the projected response of the beam-loss monitors in this region. Finally, results of the calculation are compared with experimental data. (AIP)

  9. Long-term impact of bottom trawling on pelagic-benthic coupling in the southern North Sea (German Bight)

    NASA Astrophysics Data System (ADS)

    Friedrich, Jana; van Beusekom, Justus E. E.; Neumann, Andreas; Naderipour, Celine; Janssen, Felix; Ahmerkamp, Soeren; Holtappels, Moritz; Schueckel, Ulrike

    2016-04-01

    The southern North Sea, and the German Bight, has been systematically bottom-trawled at least since the late 19th century (Christiansen, 2009; Reiss et al., 2009; Kröncke 2011; Emeis et al., 2015, Neumann et al., 2016). As a result, benthic habitats and benthic biogenic structures created by bivalves, polychaetes and hydroids where destroyed or reduced. The parallel removal of hard substrate (gravel and boulders) avoids the resettlement of hard-substrate depended species. For example, the Oyster ground, a huge oyster bank a hundred years ago (Olsen, 1883), turned into a muddy depression today. In addition, shallow depth of max 40 m, strong tidal currents and frequent storms result in a high-energy environment with low sedimentation rates and recurrent sediment resuspension. The decrease in benthic filtering capacity by disturbance in epifauna and bottom roughness (Callaway et al., 2007) apparently influence pelagic-benthic coupling of biogeochemical fluxes. Heip et al. (1995) indicate that benthic respiration at depths prevailing in the German Bight accounts for 10-40% of total respiration, whereas pelagic respiration accounts for 60-90%. Previous estimates are in the middle of this range (Heip et al., 1995). To test these hypotheses and to assess the partitioning of benthic and pelagic processes, and the factors influencing organic matter mineralization, we measured pelagic production and respiration based on Winkler titration, in-situ benthic fluxes using chamber landers, we did ex-situ incubations of intact sediment cores and analysed still images from a towed benthic video sled. In addition, O2 fluxes in permeable sediments were estimated by integrating the volumetric rate measurements of the upper sediment layer over in-situ microsensor-measured O2 penetration depth. Our current results show significant seasonality in benthic respiration, with highest rates in summer and lowest rates in winter. No significant differences in total benthic respiration rates

  10. Long-term impact of bottom trawling on pelagic-benthic coupling in the southern North Sea (German Bight)

    NASA Astrophysics Data System (ADS)

    Friedrich, Jana; van Beusekom, Justus E. E.; Neumann, Andreas; Naderipour, Celine; Janssen, Felix; Ahmerkamp, Soeren; Holtappels, Moritz; Schueckel, Ulrike

    2016-04-01

    The southern North Sea, and the German Bight, has been systematically bottom-trawled at least since the late 19th century (Christiansen, 2009; Reiss et al., 2009; Kröncke 2011; Emeis et al., 2015, Neumann et al., 2016). As a result, benthic habitats and benthic biogenic structures created by bivalves, polychaetes and hydroids where destroyed or reduced. The parallel removal of hard substrate (gravel and boulders) avoids the resettlement of hard-substrate depended species. For example, the Oyster ground, a huge oyster bank a hundred years ago (Olsen, 1883), turned into a muddy depression today. In addition, shallow depth of max 40 m, strong tidal currents and frequent storms result in a high-energy environment with low sedimentation rates and recurrent sediment resuspension. The decrease in benthic filtering capacity by disturbance in epifauna and bottom roughness (Callaway et al., 2007) apparently influence pelagic-benthic coupling of biogeochemical fluxes. Heip et al. (1995) indicate that benthic respiration at depths prevailing in the German Bight accounts for 10-40% of total respiration, whereas pelagic respiration accounts for 60-90%. Previous estimates are in the middle of this range (Heip et al., 1995). To test these hypotheses and to assess the partitioning of benthic and pelagic processes, and the factors influencing organic matter mineralization, we measured pelagic production and respiration based on Winkler titration, in-situ benthic fluxes using chamber landers, we did ex-situ incubations of intact sediment cores and analysed still images from a towed benthic video sled. In addition, O2 fluxes in permeable sediments were estimated by integrating the volumetric rate measurements of the upper sediment layer over in-situ microsensor-measured O2 penetration depth. Our current results show significant seasonality in benthic respiration, with highest rates in summer and lowest rates in winter. No significant differences in total benthic respiration rates

  11. ATP hydrolysis is essential for Bag-1M-mediated inhibition of the DNA binding by the glucocorticoid receptor

    SciTech Connect

    Hong, Wei; Chen, Linfeng; Liu, Yunde; Gao, Weizhen

    2009-12-04

    The 70-kDa heat shock protein (Hsp70) is involved in providing the appropriate conformation of various nuclear hormone receptors, including the glucocorticoid receptor (GR). The Bcl-2 associated athanogene 1M (Bag-1M) is known to downregulate the DNA binding by the GR. Also, Bag-1M interacts with the ATPase domain of Hsp70 to modulate the release of the substrate from Hsp70. In this study, we demonstrate that ATP hydrolysis enhances Bag-1M-mediated inhibition of the DNA binding by the GR. However, the inhibitory effect of Bag-1M was abolished when the intracellular ATP was depleted. In addition, a Bag-1M mutant lacking the interaction with Hsp70 did not influence the GR to bind DNA, suggesting the interaction of Bag-1M with Hsp70 in needed for its negative effect. These results indicate that ATP hydrolysis is essential for Bag-1M-mediated inhibition of the DNA binding by the GR and Hsp70 is a mediator for this process.

  12. Bipolar/rod-shaped microglia are proliferating microglia with distinct M1/M2 phenotypes.

    PubMed

    Tam, Wing Yip; Ma, Chi Him Eddie

    2014-01-01

    Microglia are generally considered the resident immune cells in the central nervous system (CNS) that regulate the primary events of neuroinflammatory responses. Microglia also play key roles in repair and neurodegeneration of the CNS after injury. Recent studies showed that trains of bipolar/rod-shaped microglia align end-to-end along the CNS injury site during the initial recovery phase. However, the cellular characteristics of bipolar/rod-shaped microglia remain largely unknown. Here, we established a highly reproducible in vitro culture model system to enrich and characterize bipolar/rod-shaped microglia by simply generating multiple scratches on a poly-d-lysine/laminin-coated culture dish. Trains of bipolar/rod-shaped microglia formed and aligned along the scratches in a manner that morphologically resembled microglial trains observed in injured brain. These bipolar/rod-shaped microglia were highly proliferative and expressed various M1/M2 markers. Further analysis revealed that these bipolar/rod-shaped microglia quickly transformed into amoeboid microglia within 30 minutes of lipopolysaccharide treatment, leading to the upregulation of pro-inflammatory cytokine gene expression and the activation of Jak/Stat. In summary, our culture system provides a model to further characterize this highly dynamic cell type. We suggest that bipolar/rod-shaped microglia are crucial for repairing the damaged CNS and that the molecular mechanisms underlying their morphological changes may serve as therapeutic biomarkers. PMID:25452009

  13. Active remote observing system for the 1-m telescope at Tonantzintla Observatory

    NASA Astrophysics Data System (ADS)

    Bernal, Abel; Martínez, Luis A.; Hernández, Héctor; Garfias, Fernando; Ángeles, Fernando

    2006-06-01

    We have designed and installed a new active remote observing system for the 1-m, f/15 telescope at the Tonantzintla Observatory. This remote system is operated in real-time through the Internet, allowing an observer to control the building, the telescope (pointing, guiding and focusing) and the CCD image acquisition at the main and finder telescopes from the Instituto de Astronomia headquarters in Mexico City (150 KM away). The whole system was modeled within the Unified Modeling Language (UML) and the design has proved to be versatile enough for a variety of astronomical instruments. We describe the system architecture and how different subsystems (telescope control, main telescope and finder image acquisition, weather station, videoconference, etc.) that are based on different operative system platforms (Linux, Windows, uIP) have been integrated. We present the first results of an IPv6 over IPv4 tunnel. Recent remote direct imaging and spectroscopic observations have been used to test the astronomical site. We conclude that this remote system is an excellent tool for supporting research and graduated observational astronomy programs.

  14. M1-M3 muscarinic acetylcholine receptor-deficient mice: novel phenotypes.

    PubMed

    Gautam, Dinesh; Duttaroy, Alokesh; Cui, Yinghong; Han, Sung-Jun; Deng, Chuxia; Seeger, Thomas; Alzheimer, Christian; Wess, Jürgen

    2006-01-01

    The five muscarinic acetylcholine receptors (M1-M5 mAChRs) mediate a very large number of important physiological functions (Caulfield, 1993; Caulfield and Birdsall, 1998; Wess, 2004). Because of the lack of small molecule ligands endowed with a high degree of receptor subtype selectivity and the fact that most tissues or cell types express two or more mAChR subtypes, identification of the physiological and pathophysiological roles of the individual mAChR subtypes has proved to be a challenging task. To overcome these difficulties, we recently generated mutant mouse lines deficient in each of the five mAChR genes (M1R-/- mice, M2R-/- mice, M3R-/- mice, etc. [Wess, 2004]). Phenotyping studies showed that each of the five mutant mouse lines displayed characteristic physiological, pharmacological, behavioral, biochemical, or neurochemical deficits (Wess, 2004). This chapter summarizes recent findings dealing with the importance of the M2mAChR for cognitive processes and the roles of the M1 and M3 mAChRs in mediating stimulation of glandular secretion. PMID:17192665

  15. Down-regulated expression of transforming growth factor beta 1 mRNA in endometrial carcinoma.

    PubMed Central

    Perlino, E.; Loverro, G.; Maiorano, E.; Giannini, T.; Cazzolla, A.; Napoli, A.; Fiore, M. G.; Ricco, R.; Marra, E.; Selvaggi, L.

    1998-01-01

    Transforming growth factor beta1 (TGF-beta1) is a potent modulator of cell proliferation in vitro, and recent studies have demonstrated its overexpression in several different tumours; nevertheless, the molecular mechanisms of TGF-beta1 action on cell growth and differentiation have not been fully elucidated. To clarify the role of TGF-beta and its receptor in human endometrial proliferation and differentiation, TGF-beta1 expression at both the mRNA and protein levels has been evaluated by using Northern blotting and immunohistochemistry, in both normal (atrophic, proliferative and secretory) and neoplastic (adenocarcinoma) endometrial samples. This study demonstrates that TGF-beta1 mRNA expression is dramatically reduced in endometrial carcinomas with respect to non-neoplastic tissues, whereas the immunohistochemical expression of TGF-beta1 is enhanced in the epithelial component of endometrial carcinomas compared with non-neoplastic tissues. These data suggest that TGF-beta1 acts as a paracrine regulator of endometrial cell proliferation and that it may contribute to the carcinogenic mechanisms of endometrial carcinoma. Images Figure 1 Figure 5 Figure 6 Figure 8 PMID:9579831

  16. Down-regulated expression of transforming growth factor beta 1 mRNA in endometrial carcinoma.

    PubMed

    Perlino, E; Loverro, G; Maiorano, E; Giannini, T; Cazzolla, A; Napoli, A; Fiore, M G; Ricco, R; Marra, E; Selvaggi, L

    1998-04-01

    Transforming growth factor beta1 (TGF-beta1) is a potent modulator of cell proliferation in vitro, and recent studies have demonstrated its overexpression in several different tumours; nevertheless, the molecular mechanisms of TGF-beta1 action on cell growth and differentiation have not been fully elucidated. To clarify the role of TGF-beta and its receptor in human endometrial proliferation and differentiation, TGF-beta1 expression at both the mRNA and protein levels has been evaluated by using Northern blotting and immunohistochemistry, in both normal (atrophic, proliferative and secretory) and neoplastic (adenocarcinoma) endometrial samples. This study demonstrates that TGF-beta1 mRNA expression is dramatically reduced in endometrial carcinomas with respect to non-neoplastic tissues, whereas the immunohistochemical expression of TGF-beta1 is enhanced in the epithelial component of endometrial carcinomas compared with non-neoplastic tissues. These data suggest that TGF-beta1 acts as a paracrine regulator of endometrial cell proliferation and that it may contribute to the carcinogenic mechanisms of endometrial carcinoma. PMID:9579831

  17. Posttranscriptional m(6)A Editing of HIV-1 mRNAs Enhances Viral Gene Expression.

    PubMed

    Kennedy, Edward M; Bogerd, Hal P; Kornepati, Anand V R; Kang, Dong; Ghoshal, Delta; Marshall, Joy B; Poling, Brigid C; Tsai, Kevin; Gokhale, Nandan S; Horner, Stacy M; Cullen, Bryan R

    2016-05-11

    Covalent addition of a methyl group to adenosine N(6) (m(6)A) is an evolutionarily conserved and common RNA modification that is thought to modulate several aspects of RNA metabolism. While the presence of multiple m(6)A editing sites on diverse viral RNAs was reported starting almost 40 years ago, how m(6)A editing affects virus replication has remained unclear. Here, we used photo-crosslinking-assisted m(6)A sequencing techniques to precisely map several m(6)A editing sites on the HIV-1 genome and report that they cluster in the HIV-1 3' untranslated region (3' UTR). Viral 3' UTR m(6)A sites or analogous cellular m(6)A sites strongly enhanced mRNA expression in cis by recruiting the cellular YTHDF m(6)A "reader" proteins. Reducing YTHDF expression inhibited, while YTHDF overexpression enhanced, HIV-1 protein and RNA expression, and virus replication in CD4+ T cells. These data identify m(6)A editing and the resultant recruitment of YTHDF proteins as major positive regulators of HIV-1 mRNA expression. PMID:27117054

  18. Age-Related Loss of Synaptophysin Immunoreactive Presynaptic Boutons within the Hippocampus of APP751SL, PS1M146L, and APP751SL/PS1M146L Transgenic Mice

    PubMed Central

    Rutten, Bart P.F.; Van der Kolk, Nicolien M.; Schafer, Stephanie; van Zandvoort, Marc A.M.J.; Bayer, Thomas A.; Steinbusch, Harry W.M.; Schmitz, Christoph

    2005-01-01

    Neuron and synapse loss are important features of the neuropathology of Alzheimer’s disease (AD). Recently, we observed substantial age-related hippocampal neuron loss in APP751SL/PS1M146L transgenic mice but not in PS1M146L mice. Here, we investigated APP751SL mice, PS1M146L mice, and APP751SL/PS1M146L mice for age-related alterations in synaptic integrity within hippocampal stratum moleculare of the dentate gyrus (SM), stratum lucidum of area CA3 (SL), and stratum radiatum of area CA1–2 (SR) by analyzing densities and numbers of synaptophysin-immunoreactive presynaptic boutons (SIPBs). Wild-type mice, APP751SL mice and PS1M146L mice showed similar amounts of age-related SIPB loss within SM, and no SIPB loss within SL. Both APP751SL mice and PS1M146L mice showed age-related SIPB loss within SR. Importantly, APP751SL/PS1M146L mice displayed the severest age-related SIPB loss within SM, SL, and SR, even in regions free of extracellular Aβ deposits. Together, these mouse models offer a unique framework to study the impact of several molecular and cellular events caused by mutant APP and/or mutant PS1 on age-related alterations in synaptic integrity. The observation of age-related SIPB loss within SR of PS1M146L mice supports a role of mutant PS1 in neurodegeneration apart from its contribution to alterations in Aβ generation. PMID:15972962

  19. Standardization of CPUE for Chilean jack mackerel ( Trachurus murphyi) from Chinese trawl fleets in the high seas of the Southeast Pacific Ocean

    NASA Astrophysics Data System (ADS)

    Li, Gang; Zou, Xiaorong; Chen, Xinjun; Zhou, Yinqi; Zhang, Min

    2013-09-01

    The generalized linear model (GLM) and generalized additive model (GAM) were applied to the standardization of catch per unit effort (CPUE) for Chilean jack mackerel from Chinese factory trawl fishing fleets in the Southeast Pacific Ocean from 2001 to 2010 by removing the operational, environmental, spatial and temporal impacts. A total of 9 factors were selected to build the GLM and GAM, i.e., Year, Month, Vessel, La Niña and El Niño events (ELE), Latitude, Longitude, Sea surface temperature (SST), SST anomaly (SSTA), Nino3.4 index and an interaction term between Longitude and Latitude. The first 5 factors were significant components in the GLM, which in combination explained 27.34% of the total variance in nominal CPUE. In the stepwise GAM, all factors explained 30.78% of the total variance, with Month, Year and Vessel as the main factors influencing CPUE. The higher CPUE occurred during the period April to July at a SST range of 12-15°C and a SSTA range of 0.2-1.0°C. The CPUE was significantly higher in normal years compared with that in La Niña and El Niño years. The abundance of Chilean jack mackerel declined during 2001 and 2010, with an increase in 2007. This work provided the relative abundance index of Chilean jack mackerel for stock assessment by standardizing catch and effort data of Chinese trawl fisheries and examined the influence of temporal, spatial, environmental and fisheries operational factors on Chilean jack mackerel CPUE.

  20. External Beam Therapy (EBT)

    MedlinePlus

    ... Physician Resources Professions Site Index A-Z External Beam Therapy (EBT) External beam therapy (EBT) is a ... follow-up should I expect? What is external beam therapy and how is it used? External beam ...

  1. Clinical usefulness of WT1 mRNA expression in bone marrow detected by a new WT1 mRNA assay kit for monitoring acute myeloid leukemia: a comparison with expression of WT1 mRNA in peripheral blood.

    PubMed

    Kitamura, Kunio; Nishiyama, Takahiro; Ishiyama, Ken; Miyawaki, Shuichi; Miyazaki, Kanji; Suzuki, Kenshi; Masaie, Hiroaki; Okada, Masaya; Ogawa, Hiroyasu; Imai, Kiyotoshi; Kiyoi, Hitoshi; Naoe, Tomoki; Yokoyama, Yasuhisa; Chiba, Shigeru; Hata, Tomoko; Miyazaki, Yasushi; Hatta, Yoshihiro; Takeuchi, Jin; Nannya, Yasuhito; Kurokawa, Mineo; Ueda, Yasunori; Koga, Daisuke; Sugiyama, Haruo; Takaku, Fumimaro

    2016-01-01

    We have previously shown the clinical usefulness of Wilms' tumor 1 gene (WT1) mRNA expression in peripheral blood (PB) as a minimal residual disease (MRD) monitoring marker in 191 acute myeloid leukemia (AML) patients using the WT1 mRNA assay kit "Otsuka" (Otsuka Pharmaceutical Co., Ltd.; "former kit"). In contrast, the usefulness of WT1 mRNA expression in bone marrow (BM) has been investigated in only a limited number of subjects using former kit. Following that previous study, a next-generation kit, WT1 mRNA assay kit II "Otsuka" (Otsuka Pharmaceutical Co., Ltd.; "new kit") has been newly developed. In the present study, we aimed to evaluate the performance of the new kit and to investigate the clinical usefulness of WT1 mRNA expression in BM. The PB and BM were collected on the same day from 164 blood disease patients, including 118 AML patients. WT1 mRNA expression was determined using the new and former kits and the values obtained were compared. The performance of new kit was shown to be equivalent to that of former kit. As reported in PB, WT1 mRNA expression in BM was found to be a useful marker for monitoring disease status as well as for a diagnosis of early stage relapse in AML patients. PMID:26520650

  2. Rac2 Controls Tumor Growth, Metastasis and M1-M2 Macrophage Differentiation In Vivo

    PubMed Central

    Joshi, Shweta; Singh, Alok R.; Zulcic, Muamera; Bao, Lei; Messer, Karen; Ideker, Trey; Dutkowski, Janusz; Durden, Donald L.

    2014-01-01

    Although it is well-established that the macrophage M1 to M2 transition plays a role in tumor progression, the molecular basis for this process remains incompletely understood. Herein, we demonstrate that the small GTPase, Rac2 controls macrophage M1 to M2 differentiation and the metastatic phenotype in vivo. Using a genetic approach, combined with syngeneic and orthotopic tumor models we demonstrate that Rac2-/- mice display a marked defect in tumor growth, angiogenesis and metastasis. Microarray, RT-PCR and metabolomic analysis on bone marrow derived macrophages isolated from the Rac2-/- mice identify an important role for Rac2 in M2 macrophage differentiation. Furthermore, we define a novel molecular mechanism by which signals transmitted from the extracellular matrix via the α4β1 integrin and MCSF receptor lead to the activation of Rac2 and potentially regulate macrophage M2 differentiation. Collectively, our findings demonstrate a macrophage autonomous process by which the Rac2 GTPase is activated downstream of the α4β1 integrin and the MCSF receptor to control tumor growth, metastasis and macrophage differentiation into the M2 phenotype. Finally, using gene expression and metabolomic data from our Rac2-/- model, and information related to M1-M2 macrophage differentiation curated from the literature we executed a systems biologic analysis of hierarchical protein-protein interaction networks in an effort to develop an iterative interactome map which will predict additional mechanisms by which Rac2 may coordinately control macrophage M1 to M2 differentiation and metastasis. PMID:24770346

  3. Suberoylanilide hydroxamic acid (SAHA) inhibits EGF-induced cell transformation via reduction of cyclin D1 mRNA stability

    SciTech Connect

    Zhang, Jingjie; Ouyang, Weiming; Li, Jingxia; Zhang, Dongyun; Yu, Yonghui; Wang, York; Li, Xuejun; Huang, Chuanshu

    2012-09-01

    Suberoylanilide hydroxamic acid (SAHA) inhibiting cancer cell growth has been associated with its downregulation of cyclin D1 protein expression at transcription level or translation level. Here, we have demonstrated that SAHA inhibited EGF-induced Cl41 cell transformation via the decrease of cyclin D1 mRNA stability and induction of G0/G1 growth arrest. We found that SAHA treatment resulted in the dramatic inhibition of EGF-induced cell transformation, cyclin D1 protein expression and induction of G0/G1 growth arrest. Further studies showed that SAHA downregulation of cyclin D1 was only observed with endogenous cyclin D1, but not with reconstitutionally expressed cyclin D1 in the same cells, excluding the possibility of SAHA regulating cyclin D1 at level of protein degradation. Moreover, SAHA inhibited EGF-induced cyclin d1 mRNA level, whereas it did not show any inhibitory effect on cyclin D1 promoter-driven luciferase reporter activity under the same experimental conditions, suggesting that SAHA may decrease cyclin D1 mRNA stability. This notion was supported by the results that treatment of cells with SAHA decreased the half-life of cyclin D1 mRNA from 6.95 h to 2.57 h. Consistent with downregulation of cyclin D1 mRNA stability, SAHA treatment also attenuated HuR expression, which has been well-characterized as a positive regulator of cyclin D1 mRNA stability. Thus, our study identifies a novel mechanism responsible for SAHA inhibiting cell transformation via decreasing cyclin D1 mRNA stability and induction of G0/G1 growth arrest in Cl41 cells. -- Highlights: ► SAHA inhibits cell transformation in Cl41 cells. ► SAHA suppresses Cyclin D1 protein expression. ► SAHA decreases cyclin D1 mRNA stability.

  4. CEBAF beam loss accounting

    SciTech Connect

    Ursic, R.; Mahoney, K.; Hovater, C.; Hutton, A.; Sinclair, C.

    1995-12-31

    This paper describes the design and implementation of a beam loss accounting system for the CEBAF electron accelerator. This system samples the beam curent throughout the beam path and measures the beam current accurately. Personnel Safety and Machine Protection systems use this system to turn off the beam when hazardous beam losses occur.

  5. Reviving astrometry on the McDonald observatory 2.1-m Otto Struve telescope

    NASA Astrophysics Data System (ADS)

    Ries, J.; Riddle, A.

    2014-07-01

    The first regular observations of asteroids at McDonald observatory started in 1950 with a 10-inch telescope as part of the Yerkes-McDonald survey, which was followed by a long lull after its completion in 1952. Astrometric observations resumed in the early 70s using the 2.1-m telescope, but were mainly of faint outer solar system satellites to support the emerging planetary space program. Observation of asteroids was later added to the program in order to refine the fundamental reference frame and to aid Hubble Space Telescope astrometry. Near-Earth Objects (NEOs) have been the main emphasis since 1995 using a 0.76 m telescope, which worked very well while the surveys concentrated on objects 1 km or larger. However, NASA's mission to discover and catalogue NEOs has been extended down to objects 140 m in size. Most of these new NEO candidates are outside the reach of the 0.76-m telescope. In 2011, the Otto Struve telescope has received a new instrument, the Camera for QUasars in EArly uNiverse, or CQUEAN (Park, 2012). The telescope-camera combination allows us to follow up virtually any object discovered by the various NEO search teams, as it provides measurable images of a 19th magnitude source with a single 10 second exposure in the red. The field of view is 4.8' by 4.8', with 0.281 arcsec/pixel resolution, and we can fully sample the point-spread function for precision astrometry. Although this telescope is 75 years old, we are getting circular stellar images for exposures up to 240 seconds with the CQUEAN auto-guider. We obtained images of M71 at three different air masses during two nights in the Sloan i and r filter bands. The σ of the standard coordinate residuals is a little under 0.07 seconds of arc for both cases. We have also looked at the field of view for systematic errors both in direction and magnitude, and we found it to be satisfactorily uniform. The overall quality of our data is improved due to better angular resolution and dome seeing. Based on

  6. Ion-beam cleaning for cold welds

    NASA Technical Reports Server (NTRS)

    Slater, B. L.

    1980-01-01

    1000 eV beam bombarding metal surfaces to be joined removes oxides and contaminants at rate of several atomic layers per second for current density of 1 mA/squ. cm. Clean surfaces can then be joined by squeezing them together. With ion-beam cleaning, mating force for strong bond is low enough to cause only 1% deformation. Conventional cold-welding requires about 70% deformation for bonding. Technique was tested successfully on aluminum to aluminum welds, copper to copper, copper to aluminum, copper to nickel, and silver to iron. Base metals failed before welds in tear test.

  7. Beam quality measure for vector beams.

    PubMed

    Ndagano, Bienvenu; Sroor, Hend; McLaren, Melanie; Rosales-Guzmán, Carmelo; Forbes, Andrew

    2016-08-01

    Vector beams have found a myriad of applications, from laser materials processing to microscopy, and are now easily produced in the laboratory. They are usually differentiated from scalar beams by qualitative measures, for example, visual inspection of beam profiles after a rotating polarizer. Here we introduce a quantitative beam quality measure for vector beams and demonstrate it on cylindrical vector vortex beams. We show how a single measure can be defined for the vector quality, from 0 (purely scalar) to 1 (purely vector). Our measure is derived from a quantum toolkit, which we show applies to classical vector beams. PMID:27472580

  8. Hsp70 Cochaperones HspBP1 and BAG-1M Differentially Regulate Steroid Hormone Receptor Function

    PubMed Central

    Knapp, Regina T.; Wong, Michael J. H.; Kollmannsberger, Lorenz K.; Gassen, Nils C.; Kretzschmar, Anja; Zschocke, Jürgen; Hafner, Kathrin; Young, Jason C.; Rein, Theo

    2014-01-01

    Hsp70 binding protein 1 (HspBP1) and Bcl2-associated athanogene 1 (BAG-1), the functional orthologous nucleotide exchange factors of the heat shock protein 70 kilodalton (Hsc70/Hsp70) chaperones, catalyze the release of ADP from Hsp70 while inducing different conformational changes of the ATPase domain of Hsp70. An appropriate exchange rate of ADP/ATP is crucial for chaperone-dependent protein folding processes. Among Hsp70 client proteins are steroid receptors such as the glucocorticoid receptor (GR), the mineralocorticoid receptor (MR), and the androgen receptor (AR). BAG-1 diversely affects steroid receptor activity, while to date the influence of HspBP1 on steroid receptor function is mostly unknown. Here, we compared the influence of HspBP1 and BAG-1M on Hsp70-mediated steroid receptor folding complexes and steroid receptor activity. Coimmunoprecipitation studies indicated preferential binding of Hsp40 and the steroid receptors to BAG-1M as compared to HspBP1. Furthermore, Hsp70 binding to the ligand-binding domain of GR was reduced in the presence of HspBP1 but not in the presence of BAG-1M as shown by pull-down assays. Reporter gene experiments revealed an inhibitory effect on GR, MR, and AR at a wide range of HspBP1 protein levels and at hormone concentrations at or approaching saturation. BAG-1M exhibited a transition from stimulatory effects at low BAG-1M levels to inhibitory effects at higher BAG-1M levels. Overall, BAG-1M and HspBP1 had differential impacts on the dynamic composition of steroid receptor folding complexes and on receptor function with important implications for steroid receptor physiology. PMID:24454860

  9. Aerosol–climate interactions in the Norwegian Earth System Model – NorESM1-M

    SciTech Connect

    Kirkevåg, A.; Iversen, T.; Seland, Ø.; Hoose, C.; Kristjánsson, J. E.; Struthers, H.; Ekman, A. M. L.; Ghan, S.; Griesfeller, J.; Nilsson, E. D.; Schulz, M.

    2013-01-01

    The objective of this study is to document and evaluate recent changes and updates to the module for aerosols and aerosol–cloud–radiation interactions in the atmospheric module CAM4-Oslo of the core version of the Norwegian Earth System Model (NorESM), NorESM1-M. Particular attention is paid to the role of natural organics, sea salt, and mineral dust in determining the gross aerosol properties as well as the anthropogenic contribution to these properties and the associated direct and indirect radiative forcing. The aerosol module is extended from earlier versions that have been published, and includes life-cycling of sea salt, mineral dust, particulate sulphate, black carbon, and primary and secondary organics. The impacts of most of the numerous changes since previous versions are thoroughly explored by sensitivity experiments. The most important changes are: modified prognostic sea salt emissions; updated treatment of precipitation scavenging and gravitational settling; inclusion of biogenic primary organics and methane sulphonic acid (MSA) from oceans; almost doubled production of land-based biogenic secondary organic aerosols (SOA); and increased ratio of organic matter to organic carbon (OM/OC) for biomass burning aerosols from 1.4 to 2.6. Compared with in situ measurements and remotely sensed data, the new treatments of sea salt and dust aerosols give smaller biases in near-surface mass concentrations and aerosol optical depth than in the earlier model version. The model biases for mass concentrations are approximately unchanged for sulphate and BC. The enhanced levels of modeled OM yield improved overall statistics, even though OM is still underestimated in Europe and overestimated in North America. The global anthropogenic aerosol direct radiative forcing (DRF) at the top of the atmosphere has changed from a small positive value to -0.08 W m-2 in CAM4-Oslo. The sensitivity tests suggest that this change can be attributed to the new treatment of biomass

  10. Beam-Bem interactions

    SciTech Connect

    Kim, Hyung Jin; /Fermilab

    2011-12-01

    In high energy storage-ring colliders, the nonlinear effect arising from beam-beam interactions is a major source that leads to the emittance growth, the reduction of beam life time, and limits the collider luminosity. In this paper, two models of beam-beam interactions are introduced, which are weak-strong and strong-strong beam-beam interactions. In addition, space-charge model is introduced.

  11. Ultrasmall PdmMn1-mOx binary alloyed nanoparticles on graphene catalysts for ethanol oxidation in alkaline media

    NASA Astrophysics Data System (ADS)

    Ahmed, Mohammad Shamsuddin; Park, Dongchul; Jeon, Seungwon

    2016-03-01

    A rare combination of graphene (G)-supported palladium and manganese in mixed-oxides binary alloyed catalysts (BACs) have been synthesized with the addition of Pd and Mn metals in various ratios (G/PdmMn1-mOx) through a facile wet-chemical method and employed as an efficient anode catalyst for ethanol oxidation reaction (EOR) in alkaline fuel cells. The as prepared G/PdmMn1-mOx BACs have been characterized by several instrumental techniques; the transmission electron microscopy images show that the ultrafine alloyed nanoparticles (NPs) are excellently monodispersed onto the G. The Pd and Mn in G/PdmMn1-mOx BACs have been alloyed homogeneously, and Mn presents in mixed-oxidized form that resulted by X-ray diffraction. The electrochemical performances, kinetics and stability of these catalysts toward EOR have been evaluated using cyclic voltammetry in 1 M KOH electrolyte. Among all G/PdmMn1-mOx BACs, the G/Pd0.5Mn0.5Ox catalyst has shown much superior mass activity and incredible stability than that of pure Pd catalysts (G/Pd1Mn0Ox, Pd/C and Pt/C). The well dispersion, ultrafine size of NPs and higher degree of alloying are the key factor for enhanced and stable EOR electrocatalysis on G/Pd0.5Mn0.5Ox.

  12. Successful personalized chemotherapy for metastatic gastric cancer based on quantitative BRCA1 mRNA expression level: A case report

    PubMed Central

    HUANG, YING; WU, PUYUAN; LIU, BAORUI; DU, JUAN

    2016-01-01

    Personalized chemotherapy is based on the specific genetic profile of individual patients and is replacing the traditional ‘one size fits all’ medicine. Breast cancer 1 (BRCA1) plays a central role in the chemotherapy-induced DNA damage response. It has been repeatedly demonstrated that BRCA1 mRNA levels were negatively associated with cisplatin sensitivity, but positively associated with docetaxel sensitivity in patients with gastric cancer in experimental and clinical studies. This feature leads to customized chemotherapy based on the BRCA1 mRNA expression level and results in a high efficacy of treatment. The present study describes the case of a 77-year-old patient with metastatic gastric cancer who was treated with personalized chemotherapy based on quantitative BRCA1 mRNA expression level. This study and the available literature data suggest that the expression level of BRCA1 mRNA is dynamic to BRCA1-based chemotherapy. More importantly, de novo assessment of BRCA1 status is a preferable option for ciscisplatin- or docetaxel-resistant patients, since the expression levels of BRCA1 mRNA in certain patients may alter significantly following treatment. Therefore, BRCA1 expression should be assessed for predicting differential chemosensitivity and tailoring chemotherapy in gastric cancer. PMID:27313763

  13. RELATIONSHIPS BETWEEN JUVENILE WINTER FLOUNDER AND MULTIPLE-SCALE HABITAT VARIATION IN NARRAGANSETT BAY, RHODE ISLAND

    EPA Science Inventory

    A rapid random-sampling method was used to relate densities of juvenile winter flounder to multiple scales of habitat variation in Narragansett Bay and two nearby coastal lagoons in Rhode Island. We used a 1-m beam trawl with attached video camera, continuous GPS track overlay, ...

  14. RELATIONSHIPS BETWEEN HABITAT ARRANGEMENT AND JUVENILE WINTER FLOUNDER DENSITY IN NARRAGANSETT BAY

    EPA Science Inventory

    We used aerial photography in conjunction with a 1-m beam trawl attached to a videocamera with GPS overwrite and a YSI water quality logger to quantify fish densities and characterize habitats in Narragansett Bay and in Rhode Island's coastal lagoons. We compared fish counts fro...

  15. RELATIONSHIPS BETWEEN HABITAT QUALITY AND DENSITY OF JUVENILE WINTER FLOUNDER

    EPA Science Inventory

    We used a digital video camera mounted to a 1-m beam trawl together with an attached continuous recording YSI sonde and GPS unit to quantify juvenile winter flounder (Pseudopleuronectes americanus) densities and fish habitat. The YSI sonde measured temperature, salinity, dissolve...

  16. USE OF VIDEO TO ACCESS JUVENILE WINTER FLOUNDER DENSITIES AND HABITATS

    EPA Science Inventory

    We used a digital video camera mounted to a 1-m beam trawl together with an attached continuous recording YSI sonde and a GPS unit to quantify juvenile winter flounder (Pseudopleuronectes americanus) densities and fish habitat in Narragansett Bay, RI. The YSI sonde measured te...

  17. Disruption of endogenous regulator homeostasis underlies the mechanism of rat CYP1A1 mRNA induction by metyrapone.

    PubMed Central

    Harvey, J L; Paine, A J; Wright, M C

    1998-01-01

    The transcriptional induction of the cytochrome P-450 1A1 (CYP1A1) gene by xenobiotics such as polyaromatic hydrocarbons is dependent on their interaction with the aryl hydrocarbon receptor. Administration of the structurally unrelated compounds metyrapone (a cytochrome P-450 inhibitor) or dexamethasone (a glucocorticoid) to male rats does not induce hepatic CYP1A1 mRNA. However, administration of both metyrapone and dexamethasone to male rats results in the induction of hepatic CYP1A1 mRNA expression. The induction response is mimicked in vitro in cultured rat hepatocytes by the addition of metyrapone and dexamethasone to a serum-free culture medium, suggesting that these compounds act directly on the liver in vivo to effect hepatic CYP1A1 mRNA induction. An examination of the characteristics of CYP1A1 induction by metyrapone and dexamethasone in combination in vitro indicate that at least 6 h of treatment is required for detectable levels of CYP1A1 mRNA to accumulate in hepatocytes. In contrast, beta-naphthoflavone, which is known to bind to the aryl hydrocarbon receptor to effect CYP1A1 gene expression, induces detectable levels of CYP1A1 mRNA within 2 h of treatment. CYP1A1 mRNA is also induced when hepatocytes are treated with metyrapone in combination with the protein synthesis inhibitor cycloheximide but not with dexamethasone in combination with cycloheximide, indicating that CYP1A1 mRNA induction is strictly dependent on the presence of metyrapone and suggesting that the metyrapone-associated induction of CYP1A1 mRNA is dependent on a loss of a constitutively expressed protein that functions to suppress CYP1A1 gene expression. The role of dexamethasone in metyrapone-associated induction of CYP1A1 is probably mediated through the glucocorticoid receptor since the glucocorticoid receptor antagonist RU486 reduces the levels of CYP1A1 mRNA induced by metyrapone and dexamethasone in combination. Increasing the levels of the photosensitizer riboflavin present in

  18. The Prognostic Value of BRCA1 mRNA Expression Levels Following Neoadjuvant Chemotherapy in Breast Cancer

    PubMed Central

    Margeli, Mireia; Cirauqui, Beatriz; Castella, Eva; Tapia, Gustavo; Costa, Carlota; Gimenez-Capitan, Ana; Barnadas, Agusti; Ronco, Maria Sanchez; Benlloch, Susana; Taron, Miquel; Rosell, Rafael

    2010-01-01

    Background A fraction of sporadic breast cancers has low BRCA1 expression. BRCA1 mutation carriers are more likely to achieve a pathological complete response with DNA-damage-based chemotherapy compared to non-mutation carriers. Furthermore, sporadic ovarian cancer patients with low levels of BRCA1 mRNA have longer survival following platinum-based chemotherapy than patients with high levels of BRCA1 mRNA. Methodology/Principal Findings Tumor biopsies were obtained from 86 breast cancer patients who were candidates for neoadjuvant chemotherapy, treated with four cycles of neoadjuvant fluorouracil, epirubicin and cyclophosphamide. Estrogen receptor (ER), progesterone receptor (PR), HER2, cytokeratin 5/6 and vimentin were examined by tissue microarray. HER2 were also assessed by chromogenic in situ hybridization, and BRCA1 mRNA was analyzed in a subset of 41 patients for whom sufficient tumor tissue was available by real-time quantitative PCR. Median time to progression was 42 months and overall survival was 55 months. In the multivariate analysis for time to progression and overall survival for 41 patients in whom BRCA1 could be assessed, low levels of BRCA1 mRNA, positive PR and negative lymph node involvement predicted a significantly lower risk of relapse, low levels of BRCA1 mRNA and positive PR were the only variables associated with significantly longer survival. Conclusions/Significance We provide evidence for a major role for BRCA1 mRNA expression as a marker of time to progression and overall survival in sporadic breast cancers treated with anthracycline-based chemotherapy. These findings can be useful for customizing chemotherapy. PMID:20209131

  19. Simple beam profile monitor

    SciTech Connect

    Gelbart, W.; Johnson, R. R.; Abeysekera, B.

    2012-12-19

    An inexpensive beam profile monitor is based on the well proven rotating wire method. The monitor can display beam position and shape in real time for particle beams of most energies and beam currents up to 200{mu}A. Beam shape, position cross-section and other parameters are displayed on a computer screen.

  20. Beam-beam effects in the Tevatron

    SciTech Connect

    Shiltsev, V.; Alexahin, Y.; Lebedev, V.; Lebrun, P.; Moore, R.S.; Sen, T.; Tollestrup, A.; Valishev, A.; Zhang, X.L.; /Fermilab

    2005-01-01

    The Tevatron in Collider Run II (2001-present) is operating with 6 times more bunches, many times higher beam intensities and luminosities than in Run I (1992-1995). Electromagnetic long-range and head-on interactions of high intensity proton and antiproton beams have been significant sources of beam loss and lifetime limitations. We present observations of the beam-beam phenomena in the Tevatron and results of relevant beam studies. We analyze the data and various methods employed in operations, predict the performance for planned luminosity upgrades, and discuss ways to improve it.

  1. From Fishing to Fish Processing: Separation of Fish from Crustaceans in the Norway Lobster-Directed Multispecies Trawl Fishery Improves Seafood Quality

    PubMed Central

    Karlsen, Junita D.; Krag, Ludvig Ahm; Albertsen, Christoffer Moesgaard; Frandsen, Rikke Petri

    2015-01-01

    Fishing gears have negative impacts on seafood quality, especially on fish in the mixed trawl fishery targeting Norway lobster (Nephrops norvegicus). In this fishery, which is worth about €80 millions in Denmark alone, the quality of fish can be significantly improved by simple gear changes. A trawl codend divided into an upper and lower codend was designed to separate fish from Norway lobster during the fishing process by encourage fish to swim into the upper codend by using a frame at the entrance of the lower codend. Separate codends for fish and Norway lobster in the same gear provide the opportunity to selectively reduce small low-value fish, which will reduce catch weight and sorting time onboard the vessel. For this horizontally divided test codend and a standard codend, in which the catch was mixed, quality assessments were performed on the same batches of fish during three steps of the value chain: i) aboard the fishing vessel; ii) at the Fishermen’s Collection Central, and iii) in the production plant. Four species of fish and fillets from fish caught in the upper codend of the test codend were of significantly better quality for several of the assessed parameters compared with those caught in the standard codend: i) newly caught fish showed significantly less scale loss and discolourations and had significantly better texture; ii) landed fish had significantly better skin appearance and texture and significantly fewer discolourations; and iii) fillets showed significantly fewer blood spots and had significantly better texture. There were no differences in injuries for newly caught fish or gaping and bruises for fillets between the test and standard codends. The decrease in catch-related damages in the test codend is explained by little contact between fish and animals with hard or spiny surfaces due to successful separation of fish and Norway lobster into the upper and lower codends, respectively, and by lower catch weight in the upper codend of the

  2. From Fishing to Fish Processing: Separation of Fish from Crustaceans in the Norway Lobster-Directed Multispecies Trawl Fishery Improves Seafood Quality.

    PubMed

    Karlsen, Junita D; Krag, Ludvig Ahm; Albertsen, Christoffer Moesgaard; Frandsen, Rikke Petri

    2015-01-01

    Fishing gears have negative impacts on seafood quality, especially on fish in the mixed trawl fishery targeting Norway lobster (Nephrops norvegicus). In this fishery, which is worth about €80 millions in Denmark alone, the quality of fish can be significantly improved by simple gear changes. A trawl codend divided into an upper and lower codend was designed to separate fish from Norway lobster during the fishing process by encourage fish to swim into the upper codend by using a frame at the entrance of the lower codend. Separate codends for fish and Norway lobster in the same gear provide the opportunity to selectively reduce small low-value fish, which will reduce catch weight and sorting time onboard the vessel. For this horizontally divided test codend and a standard codend, in which the catch was mixed, quality assessments were performed on the same batches of fish during three steps of the value chain: i) aboard the fishing vessel; ii) at the Fishermen's Collection Central, and iii) in the production plant. Four species of fish and fillets from fish caught in the upper codend of the test codend were of significantly better quality for several of the assessed parameters compared with those caught in the standard codend: i) newly caught fish showed significantly less scale loss and discolourations and had significantly better texture; ii) landed fish had significantly better skin appearance and texture and significantly fewer discolourations; and iii) fillets showed significantly fewer blood spots and had significantly better texture. There were no differences in injuries for newly caught fish or gaping and bruises for fillets between the test and standard codends. The decrease in catch-related damages in the test codend is explained by little contact between fish and animals with hard or spiny surfaces due to successful separation of fish and Norway lobster into the upper and lower codends, respectively, and by lower catch weight in the upper codend of the

  3. Partitioning the contributions of mega-, macro- and meiofauna to benthic metabolism on the upper continental slope of New Zealand: Potential links with environmental factors and trawling intensity

    NASA Astrophysics Data System (ADS)

    Leduc, Daniel; Pilditch, Conrad A.; Nodder, Scott D.

    2016-02-01

    Understanding and predicting change in deep-sea benthic ecosystem function remains a major challenge. Here, we conducted analyses combining data on the abundance and biomass of benthic fauna and sediment community oxygen consumption (SCOC) on New Zealand's continental margin to estimate and compare the contributions of meio-, macro-, and megafauna to total benthic metabolism and identify potential links with environmental factors and trawling intensity. We focussed on two regions in close proximity-the high surface primary productivity Chatham Rise and low surface productivity Challenger Plateau. Mean megafauna biomass was twenty times greater on Chatham Rise than Challenger Plateau, likely reflecting differences in food supply between the two regions; this contrast in megafaunal biomass was mainly due to differences in mean body weight rather than abundance. Meio- and macrofauna made similar contributions to SCOC and together accounted for 12% of benthic metabolism on average. In contrast, the estimated contribution of megafauna never exceeded 1.5%. Significant positive correlations between faunal respiration and food availability indicate a link between food supply and benthic community function. Our analyses also show that fauna made a greater contribution to SCOC in conditions of high food availability, and that microorganisms (i.e., the proportion of SCOC not accounted for by the fauna) tended to be more dominant at sites with low food availability. These findings provide support for the concept that large organisms are more strongly affected by a reduction in food resources than small organisms, which in turn underlies one of the most widely described patterns in the deep-sea benthos, i.e., the reduction in organism body size with depth. Because metabolism in deep-sea sediments is typically dominated by microorganisms and small fauna, the absence of a relationship between bottom trawling intensity and the respiration of benthic fauna in the present study may

  4. Beam halo in high-intensity beams

    SciTech Connect

    Wangler, T.P. )

    1993-12-25

    In space-charge dominated beams the nonlinear space-charge forces produce a filamentation pattern, which in projection to the 2-D phase spaces results in a 2-component beam consisting of an inner core and a diffuse outer halo. The beam-halo is of concern for a next generation of cw, high-power proton linacs that could be applied to intense neutron generators for nuclear materials processing. We describe what has been learned about beam halo and the evolution of space-charge dominated beams using numerical simulations of initial laminar beams in uniform linear focusing channels. We present initial results from a study of beam entropy for an intense space-charge dominated beam.

  5. Beam halo in high-intensity beams

    SciTech Connect

    Wangler, T.P.

    1993-06-01

    In space-charge dominated beams the nonlinear space-charge forces produce a filamentation pattern, which in projection to the 2-D phase spaces results in a 2-component beam consisting of an inner core and a diffuse outer halo. The beam-halo is of concern for a next generation of cw, high-power proton linacs that could be applied to intense neutron generators for nuclear materials processing. The author describes what has been learned about beam halo and the evolution of space-charge dominated beams using numerical simulations of initial laminar beams in uniform linear focusing channels. Initial results are presented from a study of beam entropy for an intense space-charge dominated beam.

  6. Beam halo in high-intensity beams

    SciTech Connect

    Wangler, T.P.

    1993-01-01

    In space-charge dominated beams the nonlinear space-charge forces produce a filamentation pattern, which in projection to the 2-D phase spaces results in a 2-component beam consisting of an inner core and a diffuse outer halo. The beam-halo is of concern for a next generation of cw, high-power proton linacs that could be applied to intense neutron generators for nuclear materials processing. The author describes what has been learned about beam halo and the evolution of space-charge dominated beams using numerical simulations of initial laminar beams in uniform linear focusing channels. Initial results are presented from a study of beam entropy for an intense space-charge dominated beam.

  7. Relativistic electron beam generator

    DOEpatents

    Mooney, L.J.; Hyatt, H.M.

    1975-11-11

    A relativistic electron beam generator for laser media excitation is described. The device employs a diode type relativistic electron beam source having a cathode shape which provides a rectangular output beam with uniform current density.

  8. Human Anti-Oxidation Protein A1M--A Potential Kidney Protection Agent in Peptide Receptor Radionuclide Therapy.

    PubMed

    Ahlstedt, Jonas; Tran, Thuy A; Strand, Sven-Erik; Gram, Magnus; Åkerström, Bo

    2015-01-01

    Peptide receptor radionuclide therapy (PRRT) has been in clinical use for 15 years to treat metastatic neuroendocrine tumors. PRRT is limited by reabsorption and retention of the administered radiolabeled somatostatin analogues in the proximal tubule. Consequently, it is essential to develop and employ methods to protect the kidneys during PRRT. Today, infusion of positively charged amino acids is the standard method of kidney protection. Other methods, such as administration of amifostine, are still under evaluation and show promising results. α₁-microglobulin (A1M) is a reductase and radical scavenging protein ubiquitously present in plasma and extravascular tissue. Human A1M has antioxidation properties and has been shown to prevent radiation-induced in vitro cell damage and protect non-irradiated surrounding cells. It has recently been shown in mice that exogenously infused A1M and the somatostatin analogue octreotide are co-localized in proximal tubules of the kidney after intravenous infusion. In this review we describe the current situation of kidney protection during PRRT, discuss the necessity and implications of more precise dosimetry and present A1M as a new, potential candidate for renal protection during PRRT and related targeted radionuclide therapies. PMID:26694383

  9. Elastin-Derived Peptides Promote Abdominal Aortic Aneurysm Formation by Modulating M1/M2 Macrophage Polarization.

    PubMed

    Dale, Matthew A; Xiong, Wanfen; Carson, Jeffrey S; Suh, Melissa K; Karpisek, Andrew D; Meisinger, Trevor M; Casale, George P; Baxter, B Timothy

    2016-06-01

    Abdominal aortic aneurysm is a dynamic vascular disease characterized by inflammatory cell invasion and extracellular matrix degradation. Damage to elastin in the extracellular matrix results in release of elastin-derived peptides (EDPs), which are chemotactic for inflammatory cells such as monocytes. Their effect on macrophage polarization is less well known. Proinflammatory M1 macrophages initially are recruited to sites of injury, but, if their effects are prolonged, they can lead to chronic inflammation that prevents normal tissue repair. Conversely, anti-inflammatory M2 macrophages reduce inflammation and aid in wound healing. Thus, a proper M1/M2 ratio is vital for tissue homeostasis. Abdominal aortic aneurysm tissue reveals a high M1/M2 ratio in which proinflammatory cells and their associated markers dominate. In the current study, in vitro treatment of bone marrow-derived macrophages with EDPs induced M1 macrophage polarization. By using C57BL/6 mice, Ab-mediated neutralization of EDPs reduced aortic dilation, matrix metalloproteinase activity, and proinflammatory cytokine expression at early and late time points after aneurysm induction. Furthermore, direct manipulation of the M1/M2 balance altered aortic dilation. Injection of M2-polarized macrophages reduced aortic dilation after aneurysm induction. EDPs promoted a proinflammatory environment in aortic tissue by inducing M1 polarization, and neutralization of EDPs attenuated aortic dilation. The M1/M2 imbalance is vital to aneurysm formation. PMID:27183603

  10. Cis-acting elements are required for selenium regulation of glutathione peroxidase-1 mRNA levels.

    PubMed Central

    Weiss, S L; Sunde, R A

    1998-01-01

    Classical glutathione peroxidase (GPX1) mRNA levels can decrease to less than 10% in selenium (Se)-deficient rat liver. The cis-acting nucleic acid sequence requirements for Se regulation of GPX1 mRNA levels were studied by transfecting Chinese hamster ovary (CHO) cells with GPX1 DNA constructs in which specific regions of the GPX1 gene were mutated, deleted, or replaced by comparable regions from unregulated genes such as phospholipid hydroperoxide glutathione peroxidase (GPX4). For each construct, stable transfectants were pooled two weeks after transfection, divided into Se-deficient (2 nM Se) or Se-adequate (200 nM Se) medium, and grown for an additional four days. On day of harvest, Se-deficient GPX1 and GPX4 activities averaged 13 +/- 2% and 15 +/- 2% of Se adequate levels, confirming that cellular Se status was dramatically altered by Se supplementation. RNA was isolated from replicate plates of cells and transfected mRNA levels were specifically determined by RNase protection assay. Analysis of chimeric GPX1/GPX4 constructs showed that the GPX4 3'-UTR can completely replace the GPX1 3'-UTR in Se regulation of GPX1 mRNA. We did not find any GPX1 coding regions that could be replaced by the corresponding GPX4 coding regions without diminishing or eliminating Se regulation of the transfected GPX1 mRNA. Further analysis of the GPX1 coding region demonstrated that the GPX1 Sec codon (UGA) and the GPX1 intron sequences are required for full Se regulation of transfected GPX1 mRNA levels. Mutations that moved the GPX1 Sec codon to three different positions within the GPX1 coding region suggest that the mechanism for Se regulation of GPX1 mRNA requires a Sec codon within exon 1. Lastly, we found that addition of the GPX1 3'-UTR to beta-globin mRNA can convey significant Se regulation to beta-globin mRNA levels when a UGA codon is placed within exon 1. We conclude that Se regulation of GPX1 mRNA requires a functional selenocysteine insertion sequence (SECIS) in the 3

  11. Beam imaging sensor

    DOEpatents

    McAninch, Michael D.; Root, Jeffrey J.

    2016-07-05

    The present invention relates generally to the field of sensors for beam imaging and, in particular, to a new and useful beam imaging sensor for use in determining, for example, the power density distribution of a beam including, but not limited to, an electron beam or an ion beam. In one embodiment, the beam imaging sensor of the present invention comprises, among other items, a circumferential slit that is either circular, elliptical or polygonal in nature.

  12. Beam imaging sensor

    SciTech Connect

    McAninch, Michael D; Root, Jeffrey J

    2015-03-31

    The present invention relates generally to the field of sensors for beam imaging and, in particular, to a new and useful beam imaging sensor for use in determining, for example, the power density distribution of a beam including, but not limited to, an electron beam or an ion beam. In one embodiment, the beam imaging sensor of the present invention comprises, among other items, a circumferential slit that is either circular, elliptical or polygonal in nature.

  13. Tunable beam displacer

    SciTech Connect

    Salazar-Serrano, Luis José; Valencia, Alejandra; Torres, Juan P.

    2015-03-15

    We report the implementation of a tunable beam displacer, composed of a polarizing beam splitter (PBS) and two mirrors, that divides an initially polarized beam into two parallel beams whose separation can be continuously tuned. The two output beams are linearly polarized with either vertical or horizontal polarization and no optical path difference is introduced between them. The wavelength dependence of the device as well as the maximum separation between the beams achievable is limited mainly by the PBS characteristics.

  14. Beam Loss Monitoring for LHC Machine Protection

    NASA Astrophysics Data System (ADS)

    Holzer, Eva Barbara; Dehning, Bernd; Effnger, Ewald; Emery, Jonathan; Grishin, Viatcheslav; Hajdu, Csaba; Jackson, Stephen; Kurfuerst, Christoph; Marsili, Aurelien; Misiowiec, Marek; Nagel, Markus; Busto, Eduardo Nebot Del; Nordt, Annika; Roderick, Chris; Sapinski, Mariusz; Zamantzas, Christos

    The energy stored in the nominal LHC beams is two times 362 MJ, 100 times the energy of the Tevatron. As little as 1 mJ/cm3 deposited energy quenches a magnet at 7 TeV and 1 J/cm3 causes magnet damage. The beam dumps are the only places to safely dispose of this beam. One of the key systems for machine protection is the beam loss monitoring (BLM) system. About 3600 ionization chambers are installed at likely or critical loss locations around the LHC ring. The losses are integrated in 12 time intervals ranging from 40 μs to 84 s and compared to threshold values defined in 32 energy ranges. A beam abort is requested when potentially dangerous losses are detected or when any of the numerous internal system validation tests fails. In addition, loss data are used for machine set-up and operational verifications. The collimation system for example uses the loss data for set-up and regular performance verification. Commissioning and operational experience of the BLM are presented: The machine protection functionality of the BLM system has been fully reliable; the LHC availability has not been compromised by false beam aborts.

  15. Distribution, biomass and size of grooved Tanner crabs (Chionoecetes tanneri) from annual bottom trawl surveys (2003-2010) along the U.S. west coast (Washington to California)

    NASA Astrophysics Data System (ADS)

    Keller, Aimee A.; Harms, John H.; Buchanan, John C.

    2012-09-01

    Catch and distribution of grooved Tanner crab (Chionoecetes tanneri Rathbun, 1893) from the Northwest Fisheries Science Center's bottom trawl survey (55-1280 m) were examined along the U.S. west coast (lat. 32°30'N-48°30'N). Grooved Tanner crabs were present in 28% of tows and occurred primarily at depths from 300 to 1280 m. Annual biomass (metric tons, mt) indices and density (kg km-2) estimates for the population varied significantly throughout the study area and within five International North Pacific Fisheries Commission (INPFC) statistical areas. Highest estimates occurred in the Monterey INPFC area (lat. 36°N-40°30'N) and within the 601-800 m depth interval. Depth distribution varied by year and coast-wide catch-weighted average depths (m) were significantly correlated with average annual Pacific Decadal Oscillation (PDO) indices (2003-2010), a measure of Pacific climate variability. Annual mean carapace widths (CW), measured from 2005 to 2010, were always greater for males (96.9-113.9 mm) relative to females (85.3-95.8 mm). Size frequency distributions varied by year with strong recruitment for both sexes apparent in 2010. Grooved Tanner crabs were partially segregated by depth and stage. Males and females were found in all depth intervals but the average depth of adult females was significantly shallower (756 m) than adult males (837 m); adults were significantly shallower than subadult female (907 m) and subadult male (927 m) crabs.

  16. Demography of a deep-sea lantern shark (Etmopterus spinax) caught in trawl fisheries of the northeastern Atlantic: Application of Leslie matrices with incorporated uncertainties

    NASA Astrophysics Data System (ADS)

    Coelho, Rui; Alpizar-Jara, Russell; Erzini, Karim

    2015-05-01

    The deep-sea lantern shark Etmopterus spinax occurs in the northeast Atlantic on or near the bottoms of the outer continental shelves and slopes, and is regularly captured as bycatch in deep-water commercial fisheries. Given the lack of knowledge on the impacts of fisheries on this species, a demographic analysis using age-based Leslie matrices was carried out. Given the uncertainties in the mortality estimates and in the available life history parameters, several different scenarios, some incorporating stochasticity in the life history parameters (using Monte Carlo simulation), were analyzed. If only natural mortality were considered, even after introducing uncertainties in all parameters, the estimated population growth rate (λ) suggested an increasing population. However, if fishing mortality from trawl fisheries is considered, the estimates of λ either indicated increasing or declining populations. In these latter cases, the uncertainties in the species reproductive cycle seemed to be particularly relevant, as a 2-year reproductive cycle indicated a stable population, while a longer (3-year cycle) indicated a declining population. The estimated matrix elasticities were in general higher for the survivorship parameters of the younger age classes and tended to decrease for the older ages. This highlights the susceptibility of this deep-sea squaloid to increasing fishing mortality, emphasizing that even though this is a small-sized species, it shows population dynamics patterns more typical of the larger-sized and in general more vulnerable species.

  17. Antenna Beam Coverage Concepts

    NASA Technical Reports Server (NTRS)

    Estabrook, Polly; Motamedi, Masoud

    1990-01-01

    The strawman Personal Access Satellite System (PASS) design calls for the use of a CONUS beam for transmission between the supplier and the satellite and for fixed beams for transmission between the basic personal terminal and the satellite. The satellite uses a 3 m main reflector for transmission at 20 GHz and a 2 m main reflector for reception at 30 GHz. There are several types of spot beams under consideration for the PASS system besides fixed beams. The beam pattern of a CONUS coverage switched beam is shown along with that of a scanning beam. A switched beam refers to one in which the signal from the satellite is connected alternatively to various feed horns. Scanning beams are taken to mean beams whose footprints are moved between contiguous regions in the beam's coverage area. The advantages and disadvantages of switched and/or scanning beams relative to fixed beams. The consequences of using switched/scanning in lieu of fixed beams in the PASS design and attempts are made to evaluate the listed advantages and disadvantages. Two uses of switched/scanning beams are examined. To illustrate the implications of switched beams use on PASS system design, operation at two beam scan rates is explored.

  18. Beam halo in mismatched proton beams.

    SciTech Connect

    Wangler, Thomas P.,; Allen, C. K.; Chan, D.; Colestock, P. L. ,; Crandall, K. R.; Qiang, J.; Garnett, R. W.; Lysenko, W. P.; Gilpatrick, J. D.; Schneider, J. D.; Schulze, M. E.; Sheffield, R. L.; Smith, H. V.

    2002-01-01

    Progress was made during the past decade towards a better understanding of halo formation caused by beam mismatch in high-intensity beams. To test these ideas an experiment was carried out at Los Alamos with proton beams in a 52-quadrupole focusing channel. Rms emittances and beam widths were obtained from measured beam profiles for comparison with the maximum emittance growth predictions of a free-energy model and the maximum haloamplitude predictions of a particle-core model. The experimental results are also compared with multiparticle simulations. In this paper we will present the experimental results and discuss the implications with respect to the validity of both the models and the simulations. Keywords: beam halo, emittance growth, beam profiles, simulations, space charge, mismatch

  19. Beam-beam interactions for bunched and unbunched beams

    SciTech Connect

    Courant, E D

    1980-01-01

    The beam-beam interaction is analyzed in terms of Chirikov's stochasticity model. Stochastic blow-up occurs when the density of resonance regions in phase space becomes large, and Arnold diffusion is assumed to depend on the density parameter below the stochastic threshold. The relation between the density parameter and the tune shift epsilon is affected by bunching of the beam and also by variations in the strengths of several interaction regions and by beam misalignment. It is seen that bunching can reduce the tolerable epsilon by as much as an order of magnitude in proton storage rings.

  20. ASH1 mRNP-core factors form stable complexes in absence of cargo RNA at physiological conditions.

    PubMed

    Edelmann, Franziska T; Niedner, Annika; Niessing, Dierk

    2015-01-01

    Asymmetric ASH1 mRNA transport during mitosis of budding yeast constitutes one of the best-studied examples of mRNA localization. Recently, 2 studies used in vitro motility assays to prove that motile ASH1 mRNA-transport complexes can be reconstituted entirely from recombinant factors. Both studies, however, differed in their conclusions on whether cargo RNA itself is required for particle assembly and thus activation of directional transport. Here we provide direct evidence that stable complexes do assemble in absence of RNA at physiologic conditions and even at ionic strengths above cellular levels. These results directly confirm the previous notion that the ASH1 transport machinery is not activated by the cargo RNA itself, but rather through protein-protein interactions. PMID:25826656

  1. Electron diffraction study of 1M illites with interstratified trans- and cis-vacant 2 : 1 layers

    SciTech Connect

    Zhukhlistov, A. P. Vikent'ev, I. V.; Rusinova, O. V.

    2012-03-15

    Illites from the volcanogenic Zn-Au-Ag sulfide deposit Galkinskoe (Northern Urals) have been investigated using oblique-texture electron diffraction patterns in combination with the simulation of diffraction effects. Along with single-phase tv/cv1M illites, the structures of which are formed by statistically interstratified dioctahedral 2: 1 layers with vacant trans- or cis-octahedra, illites in the form of a mixture of two interstratified tv/cv1M phases, with the dominance of tv- or cv layers, are identified. It is shown that in the latter case the diffraction pattern can also be interpreted within the single-phase tv/cv model, provided that the tv- and cv layers are distributed with some tendency to segregate. The structural features indicating the preference of the two-phase model are analyzed.

  2. Telecommunication using muon beams

    DOEpatents

    Arnold, Richard C.

    1976-01-01

    Telecommunication is effected by generating a beam of mu mesons or muons, varying a property of the beam at a modulating rate to generate a modulated beam of muons, and detecting the information in the modulated beam at a remote location.

  3. Novel RNA-binding activity of MYF5 enhances Ccnd1/Cyclin D1 mRNA translation during myogenesis

    PubMed Central

    Panda, Amaresh C.; Abdelmohsen, Kotb; Martindale, Jennifer L.; Di Germanio, Clara; Yang, Xiaoling; Grammatikakis, Ioannis; Noh, Ji Heon; Zhang, Yongqing; Lehrmann, Elin; Dudekula, Dawood B.; De, Supriyo; Becker, Kevin G.; White, Elizabeth J.; Wilson, Gerald M.; de Cabo, Rafael; Gorospe, Myriam

    2016-01-01

    Skeletal muscle contains long multinucleated and contractile structures known as muscle fibers, which arise from the fusion of myoblasts into multinucleated myotubes during myogenesis. The myogenic regulatory factor (MRF) MYF5 is the earliest to be expressed during myogenesis and functions as a transcription factor in muscle progenitor cells (satellite cells) and myocytes. In mouse C2C12 myocytes, MYF5 is implicated in the initial steps of myoblast differentiation into myotubes. Here, using ribonucleoprotein immunoprecipitation (RIP) analysis, we discovered a novel function for MYF5 as an RNA-binding protein which associated with a subset of myoblast mRNAs. One prominent MYF5 target was Ccnd1 mRNA, which encodes the key cell cycle regulator CCND1 (Cyclin D1). Biotin-RNA pulldown, UV-crosslinking and gel shift experiments indicated that MYF5 was capable of binding the 3′ untranslated region (UTR) and the coding region (CR) of Ccnd1 mRNA. Silencing MYF5 expression in proliferating myoblasts revealed that MYF5 promoted CCND1 translation and modestly increased transcription of Ccnd1 mRNA. Accordingly, overexpressing MYF5 in C2C12 cells upregulated CCND1 expression while silencing MYF5 reduced myoblast proliferation as well as differentiation of myoblasts into myotubes. Moreover, MYF5 silencing reduced myogenesis, while ectopically restoring CCND1 abundance partially rescued the decrease in myogenesis seen after MYF5 silencing. We propose that MYF5 enhances early myogenesis in part by coordinately elevating Ccnd1 transcription and Ccnd1 mRNA translation. PMID:26819411

  4. Development of M1 mAChR Allosteric and Bitopic Ligands: Prospective Therapeutics for the Treatment of Cognitive Deficits

    PubMed Central

    2013-01-01

    Since the cholinergic hypothesis of memory dysfunction was first reported, extensive research efforts have focused on elucidating the mechanisms by which this intricate system contributes to the regulation of processes such as learning, memory, and higher executive function. Several cholinergic therapeutic targets for the treatment of cognitive deficits, psychotic symptoms, and the underlying pathophysiology of neurodegenerative disorders, such as Alzheimer’s disease and schizophrenia, have since emerged. Clinically approved drugs now exist for some of these targets; however, they all may be considered suboptimal therapeutics in that they produce undesirable off-target activity leading to side effects, fail to address the wide variety of symptoms and underlying pathophysiology that characterize these disorders, and/or afford little to no therapeutic effect in subsets of patient populations. A promising target for which there are presently no approved therapies is the M1 muscarinic acetylcholine receptor (M1 mAChR). Despite avid investigation, development of agents that selectively activate this receptor via the orthosteric site has been hampered by the high sequence homology of the binding site between the five muscarinic receptor subtypes and the wide distribution of this receptor family in both the central nervous system (CNS) and the periphery. Hence, a plethora of ligands targeting less structurally conserved allosteric sites of the M1 mAChR have been investigated. This Review aims to explain the rationale behind allosterically targeting the M1 mAChR, comprehensively summarize and critically evaluate the M1 mAChR allosteric ligand literature to date, highlight the challenges inherent in allosteric ligand investigation that are impeding their clinical advancement, and discuss potential methods for resolving these issues. PMID:23659787

  5. Nascent peptide-mediated translation elongation arrest of Arabidopsis thaliana CGS1 mRNA occurs autonomously.

    PubMed

    Onouchi, Hitoshi; Haraguchi, Yuhi; Nakamoto, Mari; Kawasaki, Daisuke; Nagami-Yamashita, Yoko; Murota, Katsunori; Kezuka-Hosomi, Azusa; Chiba, Yukako; Naito, Satoshi

    2008-04-01

    The Arabidopsis thaliana CGS1 gene encodes cystathionine gamma-synthase, the first committed enzyme of methionine biosynthesis in higher plants. Expression of CGS1 is feedback-regulated at the step of mRNA degradation in response to S-adenosyl-L-methionine (AdoMet). A short stretch of amino acid sequence, termed the MTO1 region, encoded within the first exon of CGS1 itself acts in cis in the regulation. In vitro analyses using wheat germ extract (WGE) revealed that AdoMet induces temporal translation arrest of CGS1 mRNA prior to mRNA degradation. This translational pausing occurs immediately downstream of the MTO1 region and is mediated by the nascent MTO1 peptide. In order to elucidate further the nature of this unique regulatory mechanism, we have examined whether a non-plant system also contains the post-transcriptional regulation activity. Despite the fact that mammals do not carry cystathionine gamma-synthase, AdoMet was able to induce the MTO1 sequence-dependent translation elongation arrest in rabbit reticulocyte lysate (RRL) in a similar manner to that observed in WGE. This result suggests that MTO1 peptide-mediated translation arrest does not require a plant-specific factor and rather most probably occurs via a direct interaction between the nascent MTO1 peptide and the ribosome that has translated it. In contrast, decay intermediates of CGS1 mRNA normally observed upon induction of CGS1 mRNA decay in plant systems were not detected in RRL, raising the possibility that CGS1 mRNA degradation involves a plant-specific mechanism. PMID:18285355

  6. Trellis Coding of Non-coherent Multiple Symbol Full Response M-ary CPFSK with Modulation Index 1/M

    NASA Technical Reports Server (NTRS)

    Lee, H.; Divsalar, D.; Weber, C.

    1994-01-01

    This paper introduces a trellis coded modulation (TCM) scheme for non-coherent multiple full response M-ary CPFSK with modulation index 1/M. A proper branch metric for the trellis decoder is obtained by employing a simple approximation of the modified Bessel function for large signal to noise ratio (SNR). Pairwise error probability of coded sequences is evaluated by applying a linear approximation to the Rician random variable.

  7. The Norwegian Earth System Model, NorESM1-M - Part 1: Description and basic evaluation of the physical climate

    NASA Astrophysics Data System (ADS)

    Bentsen, M.; Bethke, I.; Debernard, J. B.; Iversen, T.; Kirkevåg, A.; Seland, Ø.; Drange, H.; Roelandt, C.; Seierstad, I. A.; Hoose, C.; Kristjánsson, J. E.

    2013-05-01

    The core version of the Norwegian Climate Center's Earth System Model, named NorESM1-M, is presented. The NorESM family of models are based on the Community Climate System Model version 4 (CCSM4) of the University Corporation for Atmospheric Research, but differs from the latter by, in particular, an isopycnic coordinate ocean model and advanced chemistry-aerosol-cloud-radiation interaction schemes. NorESM1-M has a horizontal resolution of approximately 2° for the atmosphere and land components and 1° for the ocean and ice components. NorESM is also available in a lower resolution version (NorESM1-L) and a version that includes prognostic biogeochemical cycling (NorESM1-ME). The latter two model configurations are not part of this paper. Here, a first-order assessment of the model stability, the mean model state and the internal variability based on the model experiments made available to CMIP5 are presented. Further analysis of the model performance is provided in an accompanying paper (Iversen et al., 2013), presenting the corresponding climate response and scenario projections made with NorESM1-M.

  8. Electrochemical and Morphological Study of Steel in 1 M HCl in the Presence of Task Specific Liquid

    NASA Astrophysics Data System (ADS)

    Tabatabaei, F. S.; Sarabi, A. A.; Kowsari, E.; Eivaz Mohammadloo, H.

    2015-09-01

    In the present study, corrosion inhibition influence of novel cationic surfactant (CS) with imidazole structure (1-methyl-3-octadecane imidazolium hydrogen sulfate) on low carbon steel in 1 M HCl was investigated by implementing weight loss, potentiodynamic polarization, and electrochemical impedance spectroscopy (EIS) techniques. Increasing the amount of surfactant adequately leads to an increment of the inhibition efficiency of novel CS. According to the obtained results from EIS measurements, inhibition efficiency was about 34% in the presence of 1 ppm surfactant, increasing to about 96.8% at the 25 ppm (near critical micelle concentration) surfactant concentration. Also the effects of temperature and the synergistic effect between surfactant and NaHSO4 salt were studied. The inhibition efficiency increased with the increase of NaHSO4 concentration and reached the maximum value near 0.1 M and experienced a plummet in the temperature range of 30-50 °C. Potentiodynamic polarization measurements revealed that the surfactant acts as mixed-type inhibitors. Results obtained from weight loss, polarization, and impedance measurements are in proper agreement and confirmed the fact that this surfactant is an excellent inhibitor for low carbon steel in 1 M HCl environment. The surface morphology of inhibited and uninhibited metal samples was investigated by atomic force microscope (AFM) and field emission scanning electron microscope (FE-SEM).

  9. Localising the auditory N1m with event-related beamformers: localisation accuracy following bilateral and unilateral stimulation

    PubMed Central

    Gascoyne, Lauren; Furlong, Paul L.; Hillebrand, Arjan; Worthen, Siân F.; Witton, Caroline

    2016-01-01

    The auditory evoked N1m-P2m response complex presents a challenging case for MEG source-modelling, because symmetrical, phase-locked activity occurs in the hemispheres both contralateral and ipsilateral to stimulation. Beamformer methods, in particular, can be susceptible to localisation bias and spurious sources under these conditions. This study explored the accuracy and efficiency of event-related beamformer source models for auditory MEG data under typical experimental conditions: monaural and diotic stimulation; and whole-head beamformer analysis compared to a half-head analysis using only sensors from the hemisphere contralateral to stimulation. Event-related beamformer localisations were also compared with more traditional single-dipole models. At the group level, the event-related beamformer performed equally well as the single-dipole models in terms of accuracy for both the N1m and the P2m, and in terms of efficiency (number of successful source models) for the N1m. The results yielded by the half-head analysis did not differ significantly from those produced by the traditional whole-head analysis. Any localisation bias caused by the presence of correlated sources is minimal in the context of the inter-individual variability in source localisations. In conclusion, event-related beamformers provide a useful alternative to equivalent-current dipole models in localisation of auditory evoked responses. PMID:27545435

  10. Chronic anemic hypoxemia increases plasma glucagon and hepatic PCK1 mRNA in late-gestation fetal sheep.

    PubMed

    Culpepper, Christine; Wesolowski, Stephanie R; Benjamin, Joshua; Bruce, Jennifer L; Brown, Laura D; Jonker, Sonnet S; Wilkening, Randall B; Hay, William W; Rozance, Paul J

    2016-07-01

    Hepatic glucose production (HGP) normally begins just prior to birth. Prolonged fetal hypoglycemia, intrauterine growth restriction, and acute hypoxemia produce an early activation of fetal HGP. To test the hypothesis that prolonged hypoxemia increases factors which regulate HGP, studies were performed in fetuses that were bled to anemic conditions (anemic: n = 11) for 8.9 ± 0.4 days and compared with control fetuses (n = 7). Fetal arterial hematocrit and oxygen content were 32% and 50% lower, respectively, in anemic vs. controls (P < 0.005). Arterial plasma glucose was 15% higher in the anemic group (P < 0.05). Hepatic mRNA expression of phosphonenolpyruvate carboxykinase (PCK1) was twofold higher in the anemic group (P < 0.05). Arterial plasma glucagon concentrations were 70% higher in anemic fetuses compared with controls (P < 0.05), and they were positively associated with hepatic PCK1 mRNA expression (P < 0.05). Arterial plasma cortisol concentrations increased 90% in the anemic fetuses (P < 0.05), but fetal cortisol concentrations were not correlated with hepatic PCK1 mRNA expression. Hepatic glycogen content was 30% lower in anemic vs. control fetuses (P < 0.05) and was inversely correlated with fetal arterial plasma glucagon concentrations. In isolated primary fetal sheep hepatocytes, incubation in low oxygen (3%) increased PCK1 mRNA threefold compared with incubation in normal oxygen (21%). Together, these results demonstrate that glucagon and PCK1 may potentiate fetal HGP during chronic fetal anemic hypoxemia. PMID:27170658

  11. IRF1 Downregulation by Ras/MEK Is Independent of Translational Control of IRF1 mRNA

    PubMed Central

    Komatsu, Yumiko; Derwish, Leena

    2016-01-01

    Oncogenic activation of Ras/MEK downregulates the expression of interferon regulatory factor 1 (IRF1), which is a prerequisite for oncolytic viruses to replicate in cancer cells [1]. Moreover, restoration of IRF1 expression is essential to induce apoptosis of cancer cells treated with a MEK inhibitor [2]. However, the molecular mechanisms that underlie IRF1 downregulation by Ras/MEK remain unclear. In this study, we determined whether Ras/MEK activation modulates IRF1 expression at its translational level. MEK inhibition increased the activity of IRF1 promoter construct in Ras transformed NIH3T3 cells and wild type MEF, but not in IRF1 deficient MEF, indicating that IRF1 protein is required for the transcriptional activation of IRF1. By conducting reporter analysis using IRF1 5’- and 3’- UTR constructs, we determined that cis elements on 5’- and 3’-UTR of IRF1 mRNA are not involved in the IRF1 regulation by Ras/MEK. We further compared the recruitment of ribosomes to IRF1 mRNA in RasV12 cells treated with or without the MEK inhibitor by conducting polysome analysis. No difference was observed in the polysomal distribution of IRF1 mRNA between RasV12 cells treated with and without the MEK inhibitor. These results suggest that regulation of IRF1 translation is independent of IRF1 downregulation by Ras/MEK. PMID:27508303

  12. IRF1 Downregulation by Ras/MEK Is Independent of Translational Control of IRF1 mRNA.

    PubMed

    Komatsu, Yumiko; Derwish, Leena; Hirasawa, Kensuke

    2016-01-01

    Oncogenic activation of Ras/MEK downregulates the expression of interferon regulatory factor 1 (IRF1), which is a prerequisite for oncolytic viruses to replicate in cancer cells [1]. Moreover, restoration of IRF1 expression is essential to induce apoptosis of cancer cells treated with a MEK inhibitor [2]. However, the molecular mechanisms that underlie IRF1 downregulation by Ras/MEK remain unclear. In this study, we determined whether Ras/MEK activation modulates IRF1 expression at its translational level. MEK inhibition increased the activity of IRF1 promoter construct in Ras transformed NIH3T3 cells and wild type MEF, but not in IRF1 deficient MEF, indicating that IRF1 protein is required for the transcriptional activation of IRF1. By conducting reporter analysis using IRF1 5'- and 3'- UTR constructs, we determined that cis elements on 5'- and 3'-UTR of IRF1 mRNA are not involved in the IRF1 regulation by Ras/MEK. We further compared the recruitment of ribosomes to IRF1 mRNA in RasV12 cells treated with or without the MEK inhibitor by conducting polysome analysis. No difference was observed in the polysomal distribution of IRF1 mRNA between RasV12 cells treated with and without the MEK inhibitor. These results suggest that regulation of IRF1 translation is independent of IRF1 downregulation by Ras/MEK. PMID:27508303

  13. Safer one-pot synthesis of the ‘SHAPE’ reagent 1-methyl-7-nitroisatoic anhydride (1m7)

    PubMed Central

    Turner, Rushia; Shefer, Kinneret; Ares, Manuel

    2013-01-01

    Estimating the reactivity of 2′-hydroxyl groups along an RNA chain of interest aids in the modeling of the folded RNA structure; flexible loops tend to be reactive, whereas duplex regions are generally not. Among the most useful reagents for probing 2′-hydroxyl reactivity is 1-methyl-7-nitroisatoic anhydride (1m7), but the absence of a reliable, inexpensive source has prevented widespread adoption. An existing protocol for the conversion of an inexpensive precursor 4-nitroisatoic anhydride (4NIA) recommends the use of NaH in dimethylformamide (DMF), a reagent combination that most molecular biology labs are not equipped to handle, and that does not scale safely in any case. Here we describe a safer, one-pot method for bulk conversion of 4NIA to 1m7 that reduces costs and bypasses the use of NaH. We show that 1m7 produced by this method is free of side products and can be used to probe RNA structure in vitro. PMID:24141619

  14. Activated carbon and single-walled carbon nanotube based electrochemical capacitor in 1 M LiPF{sub 6} electrolyte

    SciTech Connect

    Azam, M.A.; Jantan, N.H.; Dorah, N.; Seman, R.N.A.R.; Manaf, N.S.A.; Kudin, T.I.T.; Yahya, M.Z.A.

    2015-09-15

    Highlights: • Activated carbon and single-walled CNT based electrochemical capacitor. • Electrochemical analysis by means of CV, charge/discharge and impedance. • 1 M LiPF{sub 6} non-aqueous solution as an electrolyte. • AC/SWCNT electrode exhibits a maximum capacitance of 60.97 F g{sup −1}. - Abstract: Carbon nanotubes have been extensively studied because of their wide range of potential application such as in nanoscale electric circuits, textiles, transportation, health, and the environment. Carbon nanotubes feature extraordinary properties, such as electrical conductivities higher than those of copper, hardness and thermal conductivity higher than those of diamond, and strength surpassing that of steel, among others. This research focuses on the fabrication of an energy storage device, namely, an electrochemical capacitor, by using carbon materials, i.e., activated carbon and single-walled carbon nanotubes, of a specific weight ratio as electrode materials. The electrolyte functioning as an ion carrier is 1 M lithium hexafluorophosphate. Variations in the electrochemical performance of the device, including its capacitance, charge/discharge characteristics, and impedance, are reported in this paper. The electrode proposed in this work exhibits a maximum capacitance of 60.97 F g{sup −1} at a scan rate of 1 mV s{sup −1}.

  15. Localising the auditory N1m with event-related beamformers: localisation accuracy following bilateral and unilateral stimulation.

    PubMed

    Gascoyne, Lauren; Furlong, Paul L; Hillebrand, Arjan; Worthen, Siân F; Witton, Caroline

    2016-01-01

    The auditory evoked N1m-P2m response complex presents a challenging case for MEG source-modelling, because symmetrical, phase-locked activity occurs in the hemispheres both contralateral and ipsilateral to stimulation. Beamformer methods, in particular, can be susceptible to localisation bias and spurious sources under these conditions. This study explored the accuracy and efficiency of event-related beamformer source models for auditory MEG data under typical experimental conditions: monaural and diotic stimulation; and whole-head beamformer analysis compared to a half-head analysis using only sensors from the hemisphere contralateral to stimulation. Event-related beamformer localisations were also compared with more traditional single-dipole models. At the group level, the event-related beamformer performed equally well as the single-dipole models in terms of accuracy for both the N1m and the P2m, and in terms of efficiency (number of successful source models) for the N1m. The results yielded by the half-head analysis did not differ significantly from those produced by the traditional whole-head analysis. Any localisation bias caused by the presence of correlated sources is minimal in the context of the inter-individual variability in source localisations. In conclusion, event-related beamformers provide a useful alternative to equivalent-current dipole models in localisation of auditory evoked responses. PMID:27545435

  16. Ligand binding properties of muscarinic acetylcholine receptor subtypes (m1-m5) expressed in baculovirus-infected insect cells.

    PubMed

    Dong, G Z; Kameyama, K; Rinken, A; Haga, T

    1995-07-01

    Five subtypes of muscarinic acetylcholine receptors (m1-m5) have been expressed in insect cells (Spodoptera frugiperda, Sf9) using the baculovirus system. Up to 6 nmol of muscarinic acetylcholine receptors were produced by 1 liter culture; 0.3 to 0.6 (human m1), 3 to 6 (human m2), 2 to 4 (rat m3), 1 to 2 (rat m4) and 0.5 to 1 (human m5) nmol. Pirenzepine, AF-DX116 and hexahidrosiladifenidol showed the highest affinity for the m1, m2 and m3 subtype, respectively, indicating that these receptors expressed in Sf9 cells retain the same substrate specificity as those in mammalian tissues or cultured cells. Among 32 kinds of muscarinic ligands examined in the present studies, prifinium was found to have the highest affinity for the m4 subtype, and pilocarpine, oxotremorine, McN-A343 and promethazine the highest affinity for the m5 subtype, although the differences in the affinities among the five subtypes were less than 10-fold. Alcuronium increased the binding of [3H]N-methylscopalamine to the m2 subtype, but not the m1, m4 and m5 subtypes and only slightly to the m3 subtype. Similar but smaller effects of fangchinoline and tetrandrine were found for [3H]N-methylscopalamine binding to only the m3 subtype. These effects may also be useful for the discrimination of individual subtypes. PMID:7616422

  17. LANSCE beam current limiter

    SciTech Connect

    Gallegos, F.R.

    1996-06-01

    The Radiation Security System (RSS) at the Los Alamos Neutron Science Center (LANSCE) provides personnel protection from prompt radiation due to accelerated beam. Active instrumentation, such as the Beam Current Limiter, is a component of the RSS. The current limiter is designed to limit the average current in a beam line below a specific level, thus minimizing the maximum current available for a beam spill accident. The beam current limiter is a self-contained, electrically isolated toroidal beam transformer which continuously monitors beam current. It is designed as fail-safe instrumentation. The design philosophy, hardware design, operation, and limitations of the device are described.

  18. Automated beam builder

    NASA Technical Reports Server (NTRS)

    Muench, W. K.

    1980-01-01

    Requirements for the space fabrication of large space structures are considered with emphasis on the design, development, manufacture, and testing of a machine which automatically produces a basic building block aluminum beam. Particular problems discussed include those associated with beam cap forming; brace storage, dispensing, and transporting; beam component fastening; and beam cut-off. Various critical process tests conducted to develop technology for a machine to produce composite beams are also discussed.

  19. MBE-4, a heavy ion multiple-beam experiment

    SciTech Connect

    Avery, R.T.; Chavis, C.S.; Fessenden, T.J.; Gough, D.E.; Henderson, T.F.; Keefe, D.; Meneghetti, J.R.; Pike, C.D.; Vanecek, D.L.; Warwick, A.I.

    1985-05-01

    MBE-4, a heavy-ion multiple beam induction linac being built at LBL in FY85/86, will model many features of a much longer device. It will accelerate four space-charge-dominated cesium ion beams from, for example, 0.2 MeV, 5 mA/beam, 3.0 ..mu..sec, 1.6 m length at injection to approx.0.8 MeV, 15 mA/beam, 1.0 ..mu..sec, 1.1 m length at the exit. It will permit study of simultaneous focussing, acceleration, current amplification and emittance growth of multiple space-charge-dominated ion beams. Some features of this accelerator are described. 11 refs., 5 figs.

  20. BEAM HALO IN PROTON LINAC BEAMS

    SciTech Connect

    T. WANGLER; K. CRANDALL

    2000-08-01

    In this paper we review the present picture of km halo in proton linacs. Space-charge forces acting in mismatched beams have been identified as a major cause of beam-halo. We present a definition of halo based on a ratio of moments of the distribution of the beam coordinates. We find from our initial studies that for halo detined in this way, a beam can have rms emittance growth without halo growth, but halo growth is always accompanied by rms emittance growth. We describe the beam-halo experiment that is in preparation at Los Alamos, which will address questions about the beam profiles, maximum particle amplitudes, and rms emittance growth associated with the halo.

  1. Tevatron beam-beam compensation project progress

    SciTech Connect

    Shiltsev, V.; Zhang, X.L.; Kuznetsov, G.; Pfeffer, H.; Saewert, G.; Zimmermann, F.; Tiunov, M.; Bishofberger, K.; Bogdanov, I.; Kashtanov, E.; Kozub, S.; Sytnik, V.; Tkachenko, L.; /Serpukhov, IHEP

    2005-05-01

    In this paper, we report the progress of the Tevatron Beam-Beam Compensation (BBC) project [1]. Electron beam induced proton and antiproton tuneshifts have been reported in [2], suppression of an antiproton emittance growth has been observed, too [1]. Currently, the first electron lens (TEL1) is in operational use as the Tevatron DC beam cleaner. We have made a lot of the upgrades to improve its stability [3]. The 2nd Tevatron electron lens (TEL2) is under the final phase of development and preparation for installation in the Tevatron.

  2. ION BEAM COLLIMATOR

    DOEpatents

    Langsdorf, A.S. Jr.

    1957-11-26

    A device is described for defining a beam of high energy particles wherein the means for defining the beam in the horizontal and vertical dimension are separately adjustable and the defining members are internally cooled. In general, the device comprises a mounting block having a central opening through which the beam is projected, means for rotatably supporting two pairs of beam- forming members, passages in each member for the flow of coolant; the beam- forming members being insulated from each other and the block, and each having an end projecting into the opening. The beam-forming members are adjustable and may be cooperatively positioned to define the beam passing between the end of the members. To assist in projecting and defining the beam, the member ends have individual means connected thereto for indicating the amount of charge collected thereon due to beam interception.

  3. Reproductive parameters of rhinobatid and urolophid batoids taken as by-catch in the Queensland (Australia) east coast otter-trawl fishery.

    PubMed

    Kyne, P M; Courtney, A J; Jacobsen, I P; Bennett, M B

    2016-08-01

    Reproductive variables are provided for batoids regularly taken as by-catch in the east coast otter-trawl fishery on the inner-mid continental shelf off the south-east and central coasts of Queensland, Australia. Total length at maturity (LT50 and 95% c.i.) for the eastern shovelnose ray Aptychotrema rostrata was 639·5 mm (617·6-663·4 mm) for females and 597·3 mm (551·4-648·6 mm) for males. Litter size (n = 9) ranged from nine to 20 (mean ± s.e. = 15·1 ± 1·2). This species exhibited a positive litter size-maternal size relationship. Disc width at maturity (WD50 and 95% c.i.) for the common stingaree Trygonoptera testacea was 162·7 mm (155·8-168·5 mm) for females and 145·9 mm (140·2-150·2 mm) for males. Gravid T. testacea (n = 6) each carried a single egg in the one functional (left) uterus. Disc width at maturity (WD50 and 95% c.i.) for the Kapala stingaree Urolophus kapalensis was 153·7 mm (145·1-160·4 mm) for females and 155·2 mm (149·1-159·1 mm) for males. Gravid U. kapalensis (n = 16) each carried a single egg or embryo in the one functional (left) uterus. A single female yellowback stingaree Urolophus sufflavus carried an embryo in each uterus. A global review of the litter sizes of shovelnose rays (Rhinobatidae) and stingarees (Urolophidae) is provided. PMID:27238204

  4. Bioaccumulation of arsenic and selenium in bycatch fishes Diapterus peruvianus, Pseudupeneus grandisquamis, and Trachinotus kennedyi from shrimp trawling in the continental shelf of Guerrero, México.

    PubMed

    Spanopoulos-Zarco, Pamela; Ruelas-Inzunza, Jorge; Jara-Marini, Martín Enrique; Meza-Montenegro, Mercedes

    2015-11-01

    With the aim of determining arsenic (As) and selenium (Se) concentrations in bycatch fishes from SW Mexico and comparing elemental concentrations with limits for human consumption set in the national and international legislation, three fish species (Diapterus peruvianus, Pseudupeneus grandisquamis, and Trachinotus kennedyi) were collected from Guerrero state during trawling operations. Additionally, As and Se levels in muscle tissue were compared with similar species from diverse areas. The order of As and Se concentrations was T. kennedyi>P. grandisquamis>D. peruvianus. In Mexico, there is no regulation of As and Se levels in fish. In comparison to the legal limit (0.1 μg g(-1) wet weight) set by legislation in Venezuela, As levels in the edible portion of T. kennedyi (0.632 μg g(-1) wet weight), P. grandisquamis (0.166 μg g(-1) wet weight), and D. peruvianus (0.157 μg g(-1) wet weight) were above this limit. In the case of Se, average concentrations in T. kennedyi (0.323 μg g(-1) wet weight) were above the maximum permissible limit (0.30 μg g(-1) wet weight) set in the Chilean legislation. Se concentrations in Carangoides bajad from Saudi Arabia were comparable to values in T. kennedyi (this study). In relation to As, concentrations varied in magnitude orders; the highest As concentration (range 10.35 to 23.71 μg g(-1) wet weight) corresponded to Mullus barbatus from the Iberian Mediterranean. PMID:26497560

  5. Population parameters of the Pacific flagfin mojarra Eucinostomus currani (Perciformes: Gerreidae) captured by shrimp trawling fishery in the Gulf of California.

    PubMed

    López-Martínez, Juana; Rodríguez-Romero, Jesús; Hernández-Saavedra, Norma Y; Herrera-Valdivia, Eloisa

    2011-06-01

    Shrimp trawling fishery in the Gulf of California captures a wide variety of non-target species of fish, crustaceans, and mollusks that are relatively unknown. The Pacific flagfin mojarra Eucinostomus currani is a frequently found species in these catches, nevertheless, nothing is currently known about its population dynamics. To contribute to the knowledge on this fish species, we studied the size structure, growth, mortality, and the recruitment pattern during the 2004-2005 seasons. A total of 6,078 mojarra were captured from 350 samples, with minimum and maximum lengths of 4.5 cm and a maximum of 21.0 cm. The average total length of the four major cohorts was 11.4, 13.7, 15.6 and 18.0 cm, corresponding to ages 0.9, 1.2, 1.6 and 2.2 years, respectively, being the most abundant the 1.2 year-old group. The instant growth coefficient indicated moderate growth rates (K(s) = 0.81/year, K(E) = 0.85/year), corresponding to individuals living between 3.5 to 3.7 years. The estimated asymptotic lengths was L (infinity) = 21.8 cm. In general, the population could be considered healthy: natural mortality (M = 1.53/year); total mortality (Z = 2.73/year); condition factor (K = 0.01072); fishery mortality (F = 1.2/year) and exploitation rate (E = 0.43/year). The maximum reproduction period almost coincided with the closed season for shrimp fishing (March to August), thus we concluded that survival of the species is ensured because reproduction is indirectly protected. PMID:21717858

  6. Haematozoans from deep water fishes trawled off the Cape Verde Islands and over the Porcupine Seabight, with a revision of species within the genus Desseria (Adeleorina: Haemogregarinidae).

    PubMed

    Davies, Angela J; Hosein, Shazia; Merrett, Nigel R

    2012-02-01

    Archived blood smears from 32 of 113 fishes in 18 families and 12 orders, trawled from deep North Atlantic waters off the Cape Verde Islands in 1999 and over the Porcupine Seabight in 2001 were found to harbour haematozoans. These included four species of haemogregarines (Adeleorina, Haemogregarinidae) and a species of trypanosome (Trypanosomatina, Trypanosomatidae) located in Porcupine Seabight fishes. Also present were Haemohormidium-like structures of uncertain status found in samples from this location and from the Cape Verde Islands. Although material was limited, two of the haemogregarines were provisionally named Desseria harriottae sp. n. from Harriotta raleighana Goode et Bean (Chimaeriformes, Rhinochimaeridae), and Haemogregarina bathysauri sp. n. from Bathysaurus ferox Günther (Aulopiformes, Bathysauridae). The two remaining haemogregarines were identified as Desseria marshalllairdi (Khan, Threlfall et Whitty, 1992) from Halosauropsis macrochir (Günther) (Notacanthiformes, Halosauridae), and Haemogregarina michaeljohnstoni (Davies et Merrett, 2000) from Cataetyx laticeps Koefoed (Ophidiformes, Bythitidae). The name H. michaeljohnstoni was proposed to replace Haemogregarinajohnstoni Davies et Merrett, 2000 from C. laticeps and to avoid confusion with Hepatozoon johnstoni (Mackerras, 1961) Smith, 1996 from varanid lizards, originally named Haemogregarina johnstoni Mackerras, 1961. The trypanosome formed a mixed parasitaemia with D. harriottae in H. raleighana and was provisionally named Trypanosoma harriottae sp. n. No blood parasites had been described previously from cartilaginous fishes of the Holocephali, making the finds in H. raleighana unique. Haemohormidium-like structures were located in erythrocytes in one fish, Coryphaenoides armatus (Hector), among the Cape Verde Islands samples and in 12 species of fishes from the Porcupine Seabight; all these hosts were bony fishes. Finally, the haemogregarine species listed in the genus Desseria Siddall

  7. Indexing the relative abundance of age-0 white sturgeons in an impoundment of the lower Columbia River from highly skewed trawling data

    USGS Publications Warehouse

    Counihan, T.D.; Miller, A.I.; Parsley, M.J.

    1999-01-01

    The development of recruitment monitoring programs for age-0 white sturgeons Acipenser transmontanus is complicated by the statistical properties of catch-per-unit-effort (CPUE) data. We found that age-0 CPUE distributions from bottom trawl surveys violated assumptions of statistical procedures based on normal probability theory. Further, no single data transformation uniformly satisfied these assumptions because CPUE distribution properties varied with the sample mean (??(CPUE)). Given these analytic problems, we propose that an additional index of age-0 white sturgeon relative abundance, the proportion of positive tows (Ep), be used to estimate sample sizes before conducting age-0 recruitment surveys and to evaluate statistical hypothesis tests comparing the relative abundance of age-0 white sturgeons among years. Monte Carlo simulations indicated that Ep was consistently more precise than ??(CPUE), and because Ep is binomially rather than normally distributed, surveys can be planned and analyzed without violating the assumptions of procedures based on normal probability theory. However, we show that Ep may underestimate changes in relative abundance at high levels and confound our ability to quantify responses to management actions if relative abundance is consistently high. If data suggest that most samples will contain age-0 white sturgeons, estimators of relative abundance other than Ep should be considered. Because Ep may also obscure correlations to climatic and hydrologic variables if high abundance levels are present in time series data, we recommend ??(CPUE) be used to describe relations to environmental variables. The use of both Ep and ??(CPUE) will facilitate the evaluation of hypothesis tests comparing relative abundance levels and correlations to variables affecting age-0 recruitment. Estimated sample sizes for surveys should therefore be based on detecting predetermined differences in Ep, but data necessary to calculate ??(CPUE) should also be

  8. Influence of the hydrodynamic conditions on the accessibility of Aristeus antennatus and other demersal species to the deep water trawl fishery off the Balearic Islands (western Mediterranean)

    NASA Astrophysics Data System (ADS)

    Amores, Angel; Rueda, Lucía; Monserrat, Sebastià; Guijarro, Beatriz; Pasqual, Catalina; Massutí, Enric

    2014-10-01

    Monthly catches per unit of effort (CPUE) of adult red shrimp (Aristeus antennatus), reported in the deep water bottom trawl fishery developed on the Sóller fishing ground off northern Mallorca (Western Mediterranean), and the mean ocean surface vorticity in the surrounding areas are compared between 2000 and 2010. A good correlation is found between the rises in the surrounding surface vorticity and the drops in the CPUE of the adult red shrimp. This correlation could be explained by assuming that most of the surface vorticity episodes could reach the bottom, increasing the seabed velocities and producing sediment resuspension, which could affect the near bottom water turbidity. A. antennatus would respond to this increased turbidity disappearing from the fishing grounds, probably moving downwards to the deeper waters. This massive displacement of red shrimp specimens away from the fishing grounds would consequently decrease their accessibility to fishing exploitation. Similar although more intense responses have been observed during the downslope shelf dense water current episodes that occurred in a submarine canyon, northeast of the Iberian peninsula. The proposed mechanism suggesting how the surface vorticity observed can affect the bottom sediments is investigated using a year-long moored near-bottom current meter and a sediment trap moored near the fishing grounds. The relationship between vorticity and catches is also explored for fish species (Galeus melastomus, Micromesistius poutassou, Phycis blennoides) and other crustacean (Geryon longipes and Nephrops norvegicus), considered as by-catch of the deep water fishery in the area. Results appear to support the suggestion that the water turbidity generated by the vorticity episodes is significant enough to affect the dynamics of the demersal species.

  9. Anxiolytic activity of pyridoindole derivatives SMe1EC2 and SMe1M2: behavioral analysis using rat model

    PubMed Central

    Sedláčková, Natália; Ponechalová, Veronika; Ujházy, Eduard; Dubovický, Michal; Mach, Mojmír

    2011-01-01

    Anxiety and mood disorders have become very significant affections in the last decades. According to WHO at least one mental disease occurred per year in 27% of EU inhabitants (more than 82 mil. people). It is estimated that by 2020, depression will be the main cause of morbidity in the developed countries. These circumstances call for research for new prospective drugs with anxiolytic and antidepressive properties exhibiting no toxicity and withdrawal effect and possessing beneficial properties, like antioxidant and/or neuroprotective effects. The aim of this study was to obtain information about psychopharmacological properties of pyridoindole derivatives SMe1EC2 and SMe1M2, using non-invasive behavioral methods in rats. The battery of ethological tests (open field, elevated plus-maze, light/dark box exploration, forced swim test) was used to obtain information about anxiolytic and antidepressant activity of the pyridoindole derivatives. The substances were administered intraperitoneally 30 minutes before the tests at doses of 1, 10 and 25 mg/kg. In the behavioral tests, SMe1EC2 was found to exert anxiolytic activity in elevated plus maze with no affection of locomotor activity. The highest dose of SMe1M2 increased the time spent in the lit part of the Light/Dark box, however this result was influenced by inhibition of motor activity of the rats. Similar findings were observed also in elevated plus-maze, although these results were not statistically significant. In conclusion, from the results of our study it is evident that both pyridoindoles acted on the CNS. In the highest dose, SMe1M2 was found to possess rather sedative than anxiolytic or antidepressant activity. PMID:22319256

  10. Occupational Toluene Exposure Induces Cytochrome P450 2E1 mRNA Expression in Peripheral Lymphocytes

    PubMed Central

    Mendoza-Cantú, Ania; Castorena-Torres, Fabiola; de León, Mario Bermúdez; Cisneros, Bulmaro; López-Carrillo, Lizbeth; Rojas-García, Aurora E.; Aguilar-Salinas, Alberto; Manno, Maurizio; Albores, Arnulfo

    2006-01-01

    Print workers are exposed to organic solvents, of which the systemic toxicant toluene is a main component. Toluene induces expression of cytochrome P450 2E1 (CYP2E1), an enzyme involved in its own metabolism and that of other protoxicants, including some procarcinogens. Therefore, we investigated the association between toluene exposure and the CYP2E1 response, as assessed by mRNA content in peripheral lymphocytes or the 6-hydroxychlorzoxazone (6OH-CHZ)/chlorzoxazone (CHZ) quotient (known as CHZ metabolic ratio) in plasma, and the role of genotype (5′-flanking region RsaI/PstI polymorphic sites) in 97 male print workers. The geometric mean (GM) of toluene concentration in the air was 52.80 ppm (10–760 ppm); 54% of the study participants were exposed to toluene concentrations that exceeded the maximum permissible exposure level (MPEL). The GM of urinary hippuric acid at the end of a work shift (0.041 g/g creatinine) was elevated relative to that before the shift (0.027 g/g creatinine; p < 0.05). The GM of the CHZ metabolic ratio was 0.33 (0–9.3), with 40% of the subjects having ratios below the GM. However, the average CYP2E1 mRNA level in peripheral lymphocytes was 1.07 (0.30–3.08), and CYP2E1 mRNA levels within subjects correlated with the toluene exposure ratio (environmental toluene concentration:urinary hippuric acid concentration) (p = 0.014). Genotype did not alter the association between the toluene exposure ratio and mRNA content. In summary, with further validation, CYP2E1 mRNA content in peripheral lymphocytes could be a sensitive and noninvasive biomarker for the continuous monitoring of toluene effects in exposed persons. PMID:16581535

  11. A1M/α1-microglobulin is proteolytically activated by myeloperoxidase, binds its heme group and inhibits low density lipoprotein oxidation

    PubMed Central

    Cederlund, Martin; Deronic, Adnan; Pallon, Jan; Sørensen, Ole E.; Åkerström, Bo

    2015-01-01

    α1-microglobulin (A1M) is a 26 kDa plasma and tissue protein with reductase activity and radical- and heme-binding anti-oxidative functions. In addition, exposure of A1M to hemoglobin has been shown to induce proteolytic elimination of a C-terminal tetrapeptide yielding a heme-degrading form, truncated A1M (t-A1M). Myeloperoxidase (MPO), a heme-containing enzyme that catalyzes the production of free radicals and hypochlorite, is released by neutrophils during the inflammatory response to bacterial infections. MPO-induced low density lipoprotein (LDL)-oxidation in blood has been suggested as a causative factor in atherosclerosis. In this study we have hypothesized that A1M interacts with MPO in a similar mode as with hemoglobin, and is a regulator of its activity. The results show that A1M is proteolytically cleaved, with formation of t-A1M, after exposure to MPO, and that t-A1M contains iron and heme-degradation products. The reaction is dependent of pH, time and concentration of substrates and a pH-value around 7 is shown to be optimal for cleavage. Furthermore, A1M inhibits MPO- and hydrogen peroxide-induced oxidation of LDL. The results suggest that A1M may have a role as an inhibitor of the damaging effects of the neutrophil respiratory burst on bystander tissue components. PMID:25698971

  12. LANSCE beam current limiter

    SciTech Connect

    Gallegos, F.R.

    1997-01-01

    The Radiation Security System (RSS) at the Los Alamos Neutron Science Center (LANSCE) provides personnel protection from prompt radiation due to accelerated beam. Active instrumentation, such as the beam current limiter, is a component of the RSS. The current limiter is designed to limit the average current in a beamline below a specific level, thus minimizing the maximum current available for a beam spill accident. The beam current limiter is a self-contained, electrically isolated toroidal beam transformer which continuously monitors beam current. It is designed as fail-safe instrumentation. The design philosophy, hardware design, operation, and limitations of the device are described. {copyright} {ital 1997 American Institute of Physics.}

  13. Beam position monitor

    DOEpatents

    Alkire, Randy W.; Rosenbaum, Gerold; Evans, Gwyndaf

    2003-07-22

    An apparatus for determining the position of an x-ray beam relative to a desired beam axis. Where the apparatus is positioned along the beam path so that a thin metal foil target intersects the x-ray beam generating fluorescent radiation. A PIN diode array is positioned so that a portion of the fluorescent radiation is intercepted by the array resulting in an a series of electrical signals from the PIN diodes making up the array. The signals are then analyzed and the position of the x-ray beam is determined relative to the desired beam path.

  14. Pyramid beam splitter

    DOEpatents

    McKeown, Mark H.; Beason, Steven C.; Fairer, George

    1992-01-01

    The apparatus of the present invention provides means for obtaining accurate, dependable, measurement of bearings and directions for geologic mapping in subterranean shafts, such as, for example, nuclear waste storage investigations. In operation, a laser beam is projected along a reference bearing. A pyramid is mounted such that the laser beam is parallel to the pyramid axis and can impinge on the apex of the pyramid thus splitting the beam several ways into several beams at right angles to each other and at right angles to the reference beam. The pyramid is also translatable and rotatable in a plane perpendicular to the reference beam.

  15. Binary star speckle measurements during 1992-1997 from the SAO 6-m and 1-m telescopes in Zelenchuk

    NASA Astrophysics Data System (ADS)

    Balega, I. I.; Balega, Y. Y.; Maksimov, A. F.; Pluzhnik, E. A.; Shkhagosheva, Z. U.; Vasyuk, V. A.

    1999-12-01

    We present the results of speckle interferometric measurements of binary stars made with the television photon-counting camera at the 6-m Big Azimuthal Telescope (BTA) and 1-m telescope of the Special Astrophysical Observatory (SAO) between August 1992 and May 1997. The data contain 89 observations of 62 star systems on the large telescope and 21 on the smaller one. For the 6-m aperture 18 systems remained unresolved. The measured angular separation ranged from 39 mas, two times above the BTA diffraction limit, to 1593 mas.

  16. Physical oceanographic processes at candidate dredged-material disposal sites B1B and 1M offshore San Francisco

    SciTech Connect

    Sherwood, C.R.; Denbo, D.W.; Downing, J.P. ); Coats, D.A. )

    1990-10-01

    The US Army Corps of Engineers (USACE), San Francisco District, has identified two candidate sites for ocean disposal of material from several dredging projects in San Francisco Bay. The disposal site is to be designated under Section 103 of the Ocean Dumping Act. One of the specific criteria in the Ocean Dumping Act is that the physical environments of the candidate sites be considered. Toward this goal, the USACE requested that the Pacific Northwest Laboratory conduct a study of physical oceanographic and sediment transport processes at the candidate sites, B1B and 1M. The results of that study are presented in this report. 40 refs., 27 figs., 10 tabs.

  17. Beam-beam issues in asymmetric colliders

    SciTech Connect

    Furman, M.A.

    1992-07-01

    We discuss generic beam-beam issues for proposed asymmetric e{sup +}- e{sup -} colliders. We illustrate the issues by choosing, as examples, the proposals by Cornell University (CESR-B), KEK, and SLAC/LBL/LLNL (PEP-II).

  18. Coulomb excitation of a {sup 78}Rb radioactive beam.

    SciTech Connect

    Schwartz, J.

    1998-11-18

    In order to test the feasibility of Coulomb excitation of radioactive projectiles with low beam energies and intensities, they have produced a secondary radioactive beam of {sup 78}Rb and Coulomb re-excited it. The beam was produced in the fusion evaporation reaction {sup 24}Mg({sup 58}Ni,3pn){sup 78}Rb at a beam energy of 260 MeV, using the Argonne National Laboratory ATLAS accelerator. The residues of interest were separated from other reaction products and non-interacting beam using the Fragment Mass Analyzer (FMA). The beam leaving the FMA was {sup 78}Kr and {sup 78}Rb{sup gs,m1,m2}, which was refocused onto a {sup 58}Ni secondary target. They have extracted a spectrum of {gamma}-rays associated with re-excitation of A = 78 isobars. The re-excitation of stable {sup 78}Kr was observed, which serves as a reference. Gamma-rays associated with excitation of {sup 78}Rb{sup gs,m1,m2} were also seen. The measured yields indicate that all the {sup 78}Rb states are highly deformed.

  19. High-brilliance Zeeman-slowed cesium atomic beam

    NASA Astrophysics Data System (ADS)

    Lison, F.; Schuh, P.; Haubrich, D.; Meschede, D.

    2000-01-01

    We have built a Zeeman-slower apparatus which produces a slow and cold cesium atomic beam. The atomic beam has a mean velocity in the range 35-120 m/s and a high atomic current of more than 2×1010 cold atoms/s. A small longitudinal velocity spread was achieved by optimizing the termination of the slowing process. The measured value of less than 1 m/s is consistent with a numerical simulation of the slowing process. With a magnetic lens and a tilted two-dimensional optical molasses stage, the slow atomic beam is transversely compressed, collimated, and deflected. We achieve a transverse temperature below the Doppler limit. The brilliance of this beam has been determined to be 7×1023 atoms s-1m-2 sr-1. By optical pumping the slow atomic beam can be polarized in the outermost magnetic substates F=4,mF=+/-4, of the cesium ground state. This brilliant beam is an ideal source for experiments in atom optics and atom lithography.

  20. Beam lifetime and beam brightness in ALS

    SciTech Connect

    Kim, C.; Jackson, A.; Warwick, A.

    1995-04-01

    Beam lifetime in ALS is dominated by the Touschek scattering. Measurements of lifetime in single-bunch mode with estimates of bunch dimensions obtained from undulator radiation data are consistent with expectations (t=1.8 hours at 1.25 mA per bunch). However, the lifetime is significantly longer in multi-bunch mode (t=ll hours at 400 mA per 320 bunches). This discrepancy has been traced to an increase in the momentum spread and bunch length in the beam caused by longitudinal coupled-bunch motions driven by higher-order modes in the rf cavities. The increased momentum spread leads to a significant degradation in the undulator spectral performance. Feedback stabilization of the coupled-bunch motion improves the spectral characteristics of the undulator beam at the expense of beam lifetime. We observe an increase of {approximately}200% in beam lifetime by operating at the betatron coupling resonance.

  1. BEAMS3D Neutral Beam Injection Model

    SciTech Connect

    Lazerson, Samuel

    2014-04-14

    With the advent of applied 3D fi elds in Tokamaks and modern high performance stellarators, a need has arisen to address non-axisymmetric effects on neutral beam heating and fueling. We report on the development of a fully 3D neutral beam injection (NBI) model, BEAMS3D, which addresses this need by coupling 3D equilibria to a guiding center code capable of modeling neutral and charged particle trajectories across the separatrix and into the plasma core. Ionization, neutralization, charge-exchange, viscous velocity reduction, and pitch angle scattering are modeled with the ADAS atomic physics database [1]. Benchmark calculations are presented to validate the collisionless particle orbits, neutral beam injection model, frictional drag, and pitch angle scattering effects. A calculation of neutral beam heating in the NCSX device is performed, highlighting the capability of the code to handle 3D magnetic fields.

  2. Wide dynamic range beam profile monitor

    SciTech Connect

    Lee, D.M.; van Dyck, O.B.; Bilskie, J.R.; Brown, D.; Hardekopf, R.

    1985-10-01

    An economical harp multiplexer system has been developed to achieve a wide dynamic range. The harp system incorporates a pneumatically actuated harp detector with ceramic boards and carbon wires; a high-sensitivity multiplexer packaged in a double-wide NIM module; and flat, shielded ribbon cable consisting of individual twisted pairs. The system multiplexes 30 wires in each of the x and y planes simultaneously and operates with or without computer control. The system has operated in beams of 100 nA to 1 mA, 1- to 120-Hz repetition rate, with a signal-to-noise ratio of greater than 10/1.

  3. Wide dynamic range beam profile monitor

    SciTech Connect

    Lee, D.M.; Brown, D.; Hardekopf, R.; Bilskie, J.R.; van Dyck, O.B.V.

    1985-01-01

    An economical harp multiplexer system has been developed to achieve a wide dynamic range. The harp system incorporates a pneumatically actuated harp detector with ceramic boards and carbon wires; a high-sensitivity multiplexer packaged in a double-wide NIM module; and flat, shielded ribbon cable consisting of individual twisted pairs. The system multiplexes 30 wires in each of the x and y planes simultaneously and operates with or without computer control. The system has operated in beams of 100 nA to 1 mA, 1- to 120-Hz repetition rate, with a signal-to-noise ratio of greater than 10/1.

  4. Overexpression of the mitochondrial methyltransferase TFB1M in the mouse does not impact mitoribosomal methylation status or hearing

    PubMed Central

    Lee, Seungmin; Rose, Simon; Metodiev, Metodi D.; Becker, Lore; Vernaleken, Alexandra; Klopstock, Thomas; Gailus-Durner, Valerie; Fuchs, Helmut; Hrabě De Angelis, Martin; Douthwaite, Stephen; Larsson, Nils-Göran

    2015-01-01

    Mitochondrial dysfunction is a well-established cause of sensorineural deafness, but the pathophysiological events are poorly understood. Non-syndromic deafness and predisposition to aminoglycoside-induced deafness can be caused by specific mutations in the 12S rRNA gene of mtDNA and are thus maternally inherited traits. The pathophysiology induced by mtDNA mutations has traditionally been attributed to deficient oxidative phosphorylation, which causes energy crisis with functional impairment of multiple cellular processes. In contrast, it was recently reported that signaling induced by ‘hypermethylation’ of two conserved adenosines of 12S rRNA in the mitoribosome is of key pathophysiological importance in sensorineural deafness. In support for this concept, it was reported that overexpression of the essential mitochondrial methyltransferase TFB1M in the mouse was sufficient to induce mitoribosomal hypermethylation and deafness. At variance with this model, we show here that 12S rRNA is near fully methylated in vivo in the mouse and thus cannot be further methylated to any significant extent. Furthermore, bacterial artificial chromosome transgenic mice overexpressing TFB1M have no increase of 12S rRNA methylation levels and hear normally. We thus conclude that therapies directed against mitoribosomal methylation are unlikely to be beneficial to patients with sensorineural hearing loss or other types of mitochondrial disease. PMID:26464487

  5. Role of microglial m1/m2 polarization in relapse and remission of psychiatric disorders and diseases.

    PubMed

    Nakagawa, Yutaka; Chiba, Kenji

    2014-01-01

    Psychiatric disorders such as schizophrenia and major depressive disorder were thought to be caused by neurotransmitter abnormalities. Patients with these disorders often experience relapse and remission; however the underlying molecular mechanisms of relapse and remission still remain unclear. Recent advanced immunological analyses have revealed that M1/M2 polarization of macrophages plays an important role in controlling the balance between promotion and suppression in inflammation. Microglial cells share certain characteristics with macrophages and contribute to immune-surveillance in the central nervous system (CNS). In this review, we summarize immunoregulatory functions of microglia and discuss a possible role of microglial M1/M2 polarization in relapse and remission of psychiatric disorders and diseases. M1 polarized microglia can produce pro-inflammatory cytokines, reactive oxygen species, and nitric oxide, suggesting that these molecules contribute to dysfunction of neural network in the CNS. Alternatively, M2 polarized microglia express cytokines and receptors that are implicated in inhibiting inflammation and restoring homeostasis. Based on these aspects, we propose a possibility that M1 and M2 microglia are related to relapse and remission, respectively in psychiatric disorders and diseases. Consequently, a target molecule skewing M2 polarization of microglia may provide beneficial therapies for these disorders and diseases in the CNS. PMID:25429645

  6. Tocotrienol Attenuates Stress-Induced Gastric Lesions via Activation of Prostaglandin and Upregulation of COX-1 mRNA

    PubMed Central

    Kamisah, Yusof; Chua, Kien Hui; Qodriyah, Hj Mohd Saad

    2013-01-01

    The present study aims to distinguish the effect of tocotrienol on an important gastric protective factor, prostaglandin E2 (PGE2), in stress-induced gastric injury. Twenty-eight Wistar rats were divided into four groups of seven rats each. Two control groups were fed commercial rat diet, and two treatment groups were fed the same diet but with additional dose of omeprazole (20 mg/kg) or tocotrienol (60 mg/kg). After 28 days, rats from one control group and both treated groups were subjected to water-immersion restraint stress for 3.5 hours once. The rats were then sacrificed, their stomach isolated and gastric juice collected, lesions examined, and gastric PGE2 content and cyclooxygenase (COX) mRNA expression were determined. Both the regimes significantly attenuated the total lesion area in the stomach compared to the control. Gastric acidity, which was increased in stress, was significantly reduced in rats supplemented with omeprazole and tocotrienol. The PGE2 content was also significantly higher in the rats given tocotrienol supplementation compared to the control followed by an increase in COX-1 mRNA expression. We conclude that tocotrienol supplementation protected rat gastric mucosa against stress-induced lesions possibly by reducing gastric acidity and preserving gastric PGE2 by increasing COX-1 mRNA. PMID:23970937

  7. FUS regulates AMPA receptor function and FTLD/ALS-associated behaviour via GluA1 mRNA stabilization

    PubMed Central

    Udagawa, Tsuyoshi; Fujioka, Yusuke; Tanaka, Motoki; Honda, Daiyu; Yokoi, Satoshi; Riku, Yuichi; Ibi, Daisuke; Nagai, Taku; Yamada, Kiyofumi; Watanabe, Hirohisa; Katsuno, Masahisa; Inada, Toshifumi; Ohno, Kinji; Sokabe, Masahiro; Okado, Haruo; Ishigaki, Shinsuke; Sobue, Gen

    2015-01-01

    FUS is an RNA/DNA-binding protein involved in multiple steps of gene expression and is associated with amyotrophic lateral sclerosis (ALS) and fronto-temporal lobar degeneration (FTLD). However, the specific disease-causing and/or modifying mechanism mediated by FUS is largely unknown. Here we evaluate intrinsic roles of FUS on synaptic functions and animal behaviours. We find that FUS depletion downregulates GluA1, a subunit of AMPA receptor. FUS binds GluA1 mRNA in the vicinity of the 3′ terminus and controls poly (A) tail maintenance, thus regulating stability. GluA1 reduction upon FUS knockdown reduces miniature EPSC amplitude both in cultured neurons and in vivo. FUS knockdown in hippocampus attenuates dendritic spine maturation and causes behavioural aberrations including hyperactivity, disinhibition and social interaction defects, which are partly ameliorated by GluA1 reintroduction. These results highlight the pivotal role of FUS in regulating GluA1 mRNA stability, post-synaptic function and FTLD-like animal behaviours. PMID:25968143

  8. Role of Microglial M1/M2 Polarization in Relapse and Remission of Psychiatric Disorders and Diseases

    PubMed Central

    Nakagawa, Yutaka; Chiba, Kenji

    2014-01-01

    Psychiatric disorders such as schizophrenia and major depressive disorder were thought to be caused by neurotransmitter abnormalities. Patients with these disorders often experience relapse and remission; however the underlying molecular mechanisms of relapse and remission still remain unclear. Recent advanced immunological analyses have revealed that M1/M2 polarization of macrophages plays an important role in controlling the balance between promotion and suppression in inflammation. Microglial cells share certain characteristics with macrophages and contribute to immune-surveillance in the central nervous system (CNS). In this review, we summarize immunoregulatory functions of microglia and discuss a possible role of microglial M1/M2 polarization in relapse and remission of psychiatric disorders and diseases. M1 polarized microglia can produce pro-inflammatory cytokines, reactive oxygen species, and nitric oxide, suggesting that these molecules contribute to dysfunction of neural network in the CNS. Alternatively, M2 polarized microglia express cytokines and receptors that are implicated in inhibiting inflammation and restoring homeostasis. Based on these aspects, we propose a possibility that M1 and M2 microglia are related to relapse and remission, respectively in psychiatric disorders and diseases. Consequently, a target molecule skewing M2 polarization of microglia may provide beneficial therapies for these disorders and diseases in the CNS. PMID:25429645

  9. Laser-Beam Separator

    NASA Technical Reports Server (NTRS)

    Mcdermid, I. S.

    1984-01-01

    Train of prisms and optical stop separate fundamental beam of laser from second and higher order harmonics of beam produced in certain crystals and by stimulated Raman scattering in gases and liquids.

  10. Electron Beam Freeform Fabrication

    NASA Video Gallery

    Electron Beam Freeform Fabrication (EBF3) is a process by which NASA hopes to build metal parts in zero gravity environments. It's a layer-additive process that uses an electron beam and a solid wi...

  11. Intra-beam scattering

    NASA Astrophysics Data System (ADS)

    Piwinski, A.

    Intra-beam scattering is analysed and the rise times or damping times of the beam dimensions are derived. The theoretical results are compared with experimental values obtained on the CERN AA and SPS machines.

  12. High energy beam lines

    NASA Astrophysics Data System (ADS)

    Marchetto, M.; Laxdal, R. E.

    2014-01-01

    The ISAC post accelerator comprises an RFQ, DTL and SC-linac. The high energy beam lines connect the linear accelerators as well as deliver the accelerated beams to two different experimental areas. The medium energy beam transport (MEBT) line connects the RFQ to the DTL. The high energy beam transport (HEBT) line connects the DTL to the ISAC-I experimental stations (DRAGON, TUDA-I, GPS). The DTL to superconducting beam (DSB) transport line connects the ISAC-I and ISAC-II linacs. The superconducting energy beam transport (SEBT) line connects the SC linac to the ISAC-II experimental station (TUDA-II, HERACLES, TIGRESS, EMMA and GPS). All these lines have the function of transporting and matching the beams to the downstream sections by manipulating the transverse and longitudinal phase space. They also contain diagnostic devices to measure the beam properties.

  13. PARTICLE BEAM TRACKING CIRCUIT

    DOEpatents

    Anderson, O.A.

    1959-05-01

    >A particle-beam tracking and correcting circuit is described. Beam induction electrodes are placed on either side of the beam, and potentials induced by the beam are compared in a voltage comparator or discriminator. This comparison produces an error signal which modifies the fm curve at the voltage applied to the drift tube, thereby returning the orbit to the preferred position. The arrangement serves also to synchronize accelerating frequency and magnetic field growth. (T.R.H.)

  14. Electron beam focusing system

    SciTech Connect

    Dikansky, N.; Nagaitsev, S.; Parkhomchuk, V.

    1997-09-01

    The high energy electron cooling requires a very cold electron beam. Thus, the electron beam focusing system is very important for the performance of electron cooling. A system with and without longitudinal magnetic field is presented for discussion. Interaction of electron beam with the vacuum chamber as well as with the background ions and stored antiprotons can cause the coherent electron beam instabilities. Focusing system requirements needed to suppress these instabilities are presented.

  15. Beam Dynamics for ARIA

    SciTech Connect

    Ekdahl, Carl August Jr.

    2014-10-14

    Beam dynamics issues are assessed for a new linear induction electron accelerator being designed for flash radiography of large explosively driven hydrodynamic experiments. Special attention is paid to equilibrium beam transport, possible emittance growth, and beam stability. It is concluded that a radiographic quality beam will be produced possible if engineering standards and construction details are equivalent to those on the present radiography accelerators at Los Alamos.

  16. The crystal structure of human protein α1M reveals a chromophore-binding site and two putative protein–protein interfaces

    SciTech Connect

    Zhang, Yangli; Gao, Zengqiang; Guo, Zhen; Zhang, Hongpeng; Zhang, Zhenzhen; Luo, Miao; Hou, Haifeng; Huang, Ailong; Dong, Yuhui; Wang, Deqiang

    2013-09-27

    Highlights: •We determined the first structure of human α1M with heavy electron density of the chromophore. •We proposed a new structural model of the chromophore. •We first revealed that the two conserved surface regions of α1M are proposed as putative protein–protein interface sites. -- Abstract: Lipocalin α1-microglobulin (α1M) is a conserved glycoprotein present in plasma and in the interstitial fluids of all tissues. α1M is linked to a heterogeneous yellow–brown chromophore of unknown structure, and interacts with several target proteins, including α1-inhibitor-3, fibronectin, prothrombin and albumin. To date, there is little knowledge about the interaction sites between α1M and its partners. Here, we report the crystal structure of the human α1M. Due to the crystallization occurring in a low ionic strength solution, the unidentified chromophore with heavy electron density is observed at a hydrophobic inner tube of α1M. In addition, two conserved surface regions of α1M are proposed as putative protein–protein interface sites. Further study is needed to unravel the detailed information about the interaction between α1M and its partners.

  17. Beam injection into RHIC

    SciTech Connect

    Fischer, W.; Hahn, H.; MacKay, W.W.; Satogata, T.; Tsoupas, N.; Zhang, W.

    1997-07-01

    During the RHIC sextant test in January 1997 beam was injected into a sixth of one of the rings for the first time. The authors describe the injection zone and its bottlenecks. They report on the commissioning of the injection system, on beam based measurements of the kickers and the application program to steer the beam.

  18. ATA beam director experiment

    SciTech Connect

    Lee, E.P.; Younger, F.C.; Cruz, G.E.; Nolting, E.

    1986-06-23

    This report describes beam director elements for an experiment at the Advanced Test Accelerator. The elements described include a vernier magnet for beam aiming, an achromat magnet, and an isolation system for the beam interface. These components are built at small scale for concept testing. (JDH)

  19. Laser beam color separator

    NASA Technical Reports Server (NTRS)

    Franke, J. M.

    1978-01-01

    Multiwavelength laser beam is separated into series of parallel color beams using prism and retroreflector. Setup is inexpensive and needs no critical adjustments. It can incorporate several prisms to increase dispersion and reduce overall size. Transmission grating can be used instead of prism with sacrifice in efficiency. Spatial filter can remove unwanted beams.

  20. Electron beam device

    DOEpatents

    Beckner, E.H.; Clauser, M.J.

    1975-08-12

    This patent pertains to an electron beam device in which a hollow target is symmetrically irradiated by a high energy, pulsed electron beam about its periphery and wherein the outer portion of the target has a thickness slightly greater than required to absorb the electron beam pulse energy. (auth)

  1. Echolocating bats emit a highly directional sonar sound beam in the field

    PubMed Central

    Surlykke, Annemarie; Boel Pedersen, Simon; Jakobsen, Lasse

    2008-01-01

    Bats use echolocation or biosonar to navigate and find prey at night. They emit short ultrasonic calls and listen for reflected echoes. The beam width of the calls is central to the function of the sonar, but directionality of echolocation calls has never been measured from bats flying in the wild. We used a microphone array to record sounds and determine horizontal directionality for echolocation calls of the trawling Daubenton's bat, Myotis daubentonii, flying over a pond in its natural habitat. Myotis daubentonii emitted highly directional calls in the field. Directionality increased with frequency. At 40 kHz half-amplitude angle was 25°, decreasing to 14° at 75 kHz. In the laboratory, M. daubentonii emitted less intense and less directional calls. At 55 kHz half-amplitude angle was 40° in the laboratory versus 20° in the field. The relationship between frequency and directionality can be explained by the simple piston model. The model also suggests that the increase in the emitted intensity in the field is caused by the increased directionality, focusing sound energy in the forward direction. The bat may increase directionality by opening the mouth wider to emit a louder, narrower beam in the wild. PMID:19129126

  2. Halo formation from mismatched beam-beam interactions

    SciTech Connect

    Qiang, Ji

    2003-05-23

    In this paper, we report on the halo formation and emittance growth driven by a parametric resonance during mismatched beam-beam collisions. In the regime of the weak-strong beam-beam interaction, if two beams have the same machine tunes, on-axis head-on collisions between a mismatched strong beam and a weak beam will not cause the formation of halo. However, if the two beams collide with an initial offset, the beam-beam force from the mismatched strong beam can cause halo formation and emittance growth in the weak beam. Meanwhile, if two beams have different machine tunes, for opposite charged colliding beams, when the machine tune of the weak beam is smaller than that of strong beam, there is emittance growth in the weak beam. When the machine tune of the weak beam is larger than that of the strong beam, there is little emittance growth. In the regime of strong-strong beam-beam interaction, halo is formed in both beams even when the two beams collide head-on on the axis with equal machine tunes. This puts a strong requirement for a good beam match during the injection to colliders in order to avoid the emittance growth.

  3. Beams for kaon research

    SciTech Connect

    Pile, P.H.

    1985-01-01

    A proposed 1-2 GeV/c kaon beam line for BNL, designed to deliver momentum analyzed negative kaon beams with intensities above 10/sup 6/ per spill, is discussed. The beam intensity is expected to be about an order of magnitude greater than presently available and it is expected to be a clean beam with no more than 1:1 (..pi../sup -/,..mu../sup -/,e/sup -/)/K/sup -/. The beam line will allow a detailed investigation of strangeness -2 systems as well as continued investigations of strangeness -1 systems.

  4. Neutral beam monitoring

    DOEpatents

    Fink, Joel H.

    1981-08-18

    Method and apparatus for monitoring characteristics of a high energy neutral beam. A neutral beam is generated by passing accelerated ions through a walled cell containing a low energy neutral gas, such that charge exchange neutralizes the high energy ion beam. The neutral beam is monitored by detecting the current flowing through the cell wall produced by low energy ions which drift to the wall after the charge exchange. By segmenting the wall into radial and longitudinal segments various beam conditions are further identified.

  5. BEAM CONTROL PROBE

    DOEpatents

    Chesterman, A.W.

    1959-03-17

    A probe is described for intercepting a desired portion of a beam of charged particles and for indicating the spatial disposition of the beam. The disclosed probe assembly includes a pair of pivotally mounted vanes moveable into a single plane with adjacent edges joining and a calibrated mechanical arrangement for pivoting the vancs apart. When the probe is disposed in the path of a charged particle beam, the vanes may be adjusted according to the beam current received in each vane to ascertain the dimension of the beam.

  6. Indole Alkaloids of Alstonia angustifolia var. latifolia as Green Inhibitor for Mild Steel Corrosion in 1 M HCl Media

    NASA Astrophysics Data System (ADS)

    Raja, Pandian Bothi; Qureshi, Ahmad Kaleem; Rahim, Afidah Abdul; Awang, Khalijah; Mukhtar, Mat Ropi; Osman, Hasnah

    2013-04-01

    The inhibition effect of mild steel (MS) corrosion in 1 M HCl was studied by the addition of indole alkaloids (crude) isolated from Alstonia angustifolia var. latifolia ( A. latifolia) leaves at 303 K. Potentiodynamic polarization, impedance spectroscopy, scanning electron microscopy (SEM), and Fourier transform infrared (FTIR) analyses were used for this study. Results show that the isolated alkaloid extract of A. latifolia is a good inhibitor and exhibited maximum inhibition efficiency (above 80%) at concentrations between 3 and 5 mg/L. Polarization measurements indicated that the inhibitor does not alter the mechanism of either anodic or cathodic reactions and acted as mixed-type inhibitor. The inhibition efficiencies of both electrochemical techniques are found to be in good agreement and adsorption of inhibitor follows Langmuir isotherm. Adsorption of inhibitor over metal surface was well supported by the SEM studies, while FTIR studies evidenced the presence of indole alkaloids as green inhibitor that reduces the rate of corrosion.

  7. 1 mJ nanosecond all-fiber thulium-doped fiber laser at 2.05 μm.

    PubMed

    Li, Lei; Zhang, Bin; Yin, Ke; Yang, Linyong; Hou, Jing

    2015-07-13

    A high energy all-fiber format nanosecond thulium-doped fiber laser at 2050 nm with a master oscillator power amplifier (MOPA) configuration is presented in this paper. The seed oscillator is a linearly polarized gain-switched fiber laser pumped by a 1550 nm fiber laser. The output pulse of the seed has a polarization extinction ratio (PER) better than 16 dB with a maximal output power of 470 mW. After two-stage double- cladding fiber amplifiers, the average power at 40 kHz was boosted up to 40.5 W. The output pulse has a maximum pulse energy of 1 mJ with a pulse width of 100 ns, which corresponds to a peak power of 10 kW. To the best of our knowledge, it is the highest single pulse energy ever reported for a nanosecond thulium-doped all-fiber MOPA system at 2050 nm. PMID:26191869

  8. Height-resolved large-sample INAA of a 1 m long, 13 cm diameter ditch-bottom sample

    NASA Astrophysics Data System (ADS)

    Blaauw, M.; Baas, H. W.; Donze, M.

    2003-06-01

    A facility for instrumental neutron activation analysis (INAA) of large samples (up to 1 m long and 15 cm diameter) has been built. Correction methods for the simultaneous occurrence of neutron self-shielding and gamma-ray self-attenuation effects have been implemented and tested with a variety of samples. Now, the method has been extended to allow for the interpretation of scanned, collimated measurements, where results are obtained for individual voxels. As a validation and demonstration, a ditch-bottom sample of the maximum size was taken in a frozen condition. It was cut in 2 cm slices, still frozen, and put together again with each slice in a 2 cm height Petri dish divided in three sections. This allowed for verification of the results by ordinary INAA. Possible explanations for the discrepancies we observed between ordinary and large-sample INAA in the region where the concentration gradients are the steepest are discussed.

  9. Troposphere - ionosphere coupling: results of the ground based observations in Antarctica and perspective for "Sich-1M" satellite experiment

    NASA Astrophysics Data System (ADS)

    Lizunov, G.; Yampolski, Yu.; Korepanov, V.; Lytvynenko, L.; Zalizovsky, A.

    The impact of meteorological processes upon the ionosphere cannot be ignored in conceptual space weather models. The giant energy stored in motion of tropospheric air masses (weather fronts, cyclones, stream jets, penetrating convection, etc) serves as a powerful source of upward energy fluxes propagating from the lower to upper atmosphere. The prospective energy carrier might be associated with the middle-scale atmospheric gravity waves (AGW) traveling upwards to the ionospheric heights and producing the effects known as traveling ionospheric disturbances (TID's). We present the results of detailed experimental and theoretical study of these phenomena. The original data had been provided by experiments in the region of high meteorological activity, namely Antarctic coast of the Drake Passage, where the Ukrainian Antarctic station " Akademik Vernadsky" is located (UK's "Michael Faraday" till 1996). The permanent data sets were collected over the seven years from 1996 till 2002. The passing atmospheric fronts were in most cases accompanied by excitation of middle-scale AGW's and quasiperiodic variations of magnetic field components, showing the same time periods as the atmospheric pressure. As follows from the cross-correlation analysis of the magnetic field and pressure variations, the magnetic field normally lagged behind the pressure by few tens minutes. On this base we elaborate a quantitative model describing the AGW excitation by weather fronts, AGW propagation to the upper atmosphere and generation of geomagnetic pulsation in the ionospheric dynamo-region. We expect to carry out further experiments onboard Ukrainian remote sensing satellite "Sich-1M" (launch in 2004), which payload contains optical and radar equipment allowing to detect weather systems as well as a set of electromagnetic sensors ("Variant" experiment" for registration of the fine structure of fields and currents in the ionosphere. We are going to compare a ground based meteorological and

  10. Dissociation of SERPINE1 mRNA from the translational repressor proteins Ago2 and TIA-1 upon platelet activation.

    PubMed

    Corduan, Aurélie; Plé, Hélène; Laffont, Benoit; Wallon, Thérèse; Plante, Isabelle; Landry, Patricia; Provost, Patrick

    2015-05-01

    Platelets play an important role in haemostasis, as well as in thrombosis and coagulation processes. They harbour a wide variety of messenger RNAs (mRNAs), that can template de novo protein synthesis, and an abundant array of microRNAs, which are known to mediate mRNA translational repression through proteins of the Argonaute (Ago) family. The relationship between platelet microRNAs and proteins capable of mediating translational repression, however, remains unclear. Here, we report that half of platelet microRNAs is associated to mRNA-regulatory Ago2 protein complexes, in various proportions. Associated to these Ago2 complexes are platelet mRNAs known to support de novo protein synthesis. Reporter gene activity assays confirmed the capacity of the platelet microRNAs, found to be associated to Ago2 complexes, to regulate translation of these platelet mRNAs through their 3'UTR. Neither the microRNA repertoire nor the microRNA composition of Ago2 complexes of human platelets changed upon activation with thrombin. However, under conditions favoring de novo synthesis of Plasminogen Activator Inhibitor-1 (PAI-1) protein, we documented a rapid dissociation of the encoding platelet SERPINE1 mRNA from Ago2 protein complexes as well as from the translational repressor protein T-cell-restricted intracellular antigen-1 (TIA-1). These findings are consistent with a scenario by which lifting of the repressive effects of Ago2 and TIA-1 protein complexes, involving a rearrangement of proteinmRNA complexes rather than disassembly of Ago2microRNA complexes, would allow translation of SERPINE1 mRNA into PAI-1 in response to platelet activation. PMID:25673011

  11. Shifted nondiffractive Bessel beams

    NASA Astrophysics Data System (ADS)

    Kovalev, Alexey A.; Kotlyar, Victor V.; Porfirev, Alexey A.

    2015-05-01

    Nondiffractive Bessel beams are well known to have infinite energy and infinite orbital angular momentum (OAM). However, when normalized to unity of energy, their OAM is finite. In this work, we derive an analytical relationship for calculating the normalized OAM of the superposition of off-axis Bessel beams characterized by the same topological charge. We show that if the constituent beams of the superposition have real-valued weight coefficients, the total OAM of the superposition of the Bessel beams equals that of an individual nonshifted Bessel beam. This property enables generating nondiffractive beams with different intensity distributions but identical OAM. The superposition of a set of identical Bessel beams centered on an arbitrary-radius circle is shown to be equivalent to an individual constituent Bessel beam put in the circle center. As a result of a complex shift of the Bessel beam, the transverse intensity distribution and OAM of the beam are also shown to change. We show that, in the superposition of two or more complex-shifted Bessel beams, the OAM may remain unchanged, while the intensity distribution is changed. Numerical simulation is in good agreement with theory.

  12. Dynamics of beam halo in mismatched beams

    SciTech Connect

    Wangler, T.P.; Garnett, R.W.; Gray, E.R.; Ryne, R.D.; Wang, T.S.

    1996-09-01

    High-power proton linacs for nuclear materials transmutation and production, and new accelerator-driven neutron spallation sources must be designed to control beam-halo formation, which leads to beam loss. The study of particle-core models is leading to a better understanding of the causes and characteristics of beam halo produced by space-charge forces in rms mismatched beams. Detailed studies of the models have resulted in predictions of the dependence of the maximum amplitude of halo particles on a mismatch parameter and on the space-charge tune-depression ratio. Scaling formulas have been derived which will provide guidance for choosing the aperture radius to contain the halo without loss.

  13. Comparison of PA imaging by narrow beam scanning and one-shot broad beam excitation

    NASA Astrophysics Data System (ADS)

    Xia, Jinjun; Wei, Chen-Wei; Huang, Lingyun; Pelivanov, I. M.; O'Donnell, Matthew

    2011-03-01

    Current systems designed for deep photoacoustic (PA) imaging typically use a low repetition rate, high power pulsed laser to provide a ns-scale pulse illuminating a large tissue volume. Acoustic signals recorded on each laser firing can be used to reconstruct a complete 2-D (3-D) image of sources of heat release within that region. Using broad-beam excitation, the maximum frame rate of the imaging system is restricted by the pulse repetition rate of the laser. An alternate illumination approach is proposed based on fast scanning by a low energy (~ 1 mJ) high repetition rate (up to a few kHz) narrow laser beam (~1 mm) along the tissue surface over a region of interest. A final PA image is produced from the summation of individual PA images reconstructed at each laser beam position. This concept can take advantage of high repetition rate fiber lasers to create PA images with much higher frame rates than current systems, enabling true real-time integration of photoacoustics with ultrasound imaging. As an initial proof of concept, we compare conventional broad beam illumination to a scanned beam approach in a simple model system. Two transparent teflon tubes with diameters of 1.6 mm and 0.8 mm were filled with ink having an absorption coefficient of 5 cm-1. These tubes were buried inside chicken breast tissue acting as an optical scattering medium. They were separated by 3 mm or 10 mm to test spatial and contrast resolution for the two scan formats. The excitation wavelength was 700 nm. The excitation source is a traditional OPO pumped by a Q-switched Nd:YAG laser with doubler. Photoacoustic images were reconstructed using signals from a small, scanned PVDF transducer acting as an acoustic array. Two different illumination schemes were compared: one was 15 mm x 10 mm in cross section and acted as the broad beam; the other was 5 mm x 2 mm in cross section (15 times smaller than the broad beam case) and was scanned over an area equivalent to broad beam illumination

  14. Ion Chambers for Monitoring the NuMI Neutrino Beam at Fermilab

    SciTech Connect

    Indurthy, Dharmaraj; Keisler, Ryan; Kopp, Sacha; Mendoza, Steven; Proga, Marek; Pavlovich, Zarko; Zwaska, Robert; Harris, Deborah; Marchionni, Alberto; Morfin, Jorge; Erwin, Albert; Ping Huicana; Velissaris, Christos; Naples, Donna; Northacker, Dave; McDonald, Jeff; Diwan, Milind; Viren, Brett

    2004-11-10

    The Neutrinos at the Main Injector (NuMI) beamline will deliver an intense muon neutrino beam by focusing a beam of mesons into a long evacuated decay volume. The beam must be steered with 1-mRad angular accuracy toward the Soudan Underground Laboratory in northern Minnesota. We have built 4 arrays of ionization chambers to monitor the neutrino beam direction and quality. The arrays are located at 4 stations downstream of the decay volume, and measure the remnant hadron beam and tertiary muons produced along with neutrinos in meson decays. We review how the monitors will be used to make beam quality measurements, and as well review chamber construction details, radiation damage testing, calibration, and test beam results.

  15. ABCG2-overexpressing S1-M1-80 cell xenografts in nude mice keep original biochemistry and cell biological properties

    PubMed Central

    Wang, Fang; Liang, Yong-Ju; Wu, Xing-Ping; Su, Xiao-Dong; Fu, Li-Wu

    2012-01-01

    S1-M1-80 cells, derived from human colon carcinoma S1 cells, are mitoxantrone-selected ABCG2-overexpressing cells and are widely used in in vitro studies of multidrug resistance (MDR). In this study, S1-M1-80 cell xenografts were established to investigate whether the MDR phenotype and cell biological properties were maintained in vivo. Our results showed that the proliferation, cell cycle, and ABCG2 expression level in S1-M1-80 cells were similar to those in cells isolated from S1-M1-80 cell xenografts (named xS1-M1-80 cells). Consistently, xS1-M1-80 cells exhibited high levels of resistance to ABCG2 substrates such as mitoxantrone and topotecan, but remained sensitive to the non-ABCG2 substrate cisplatin. Furthermore, the specific ABCG2 inhibitor Ko143 potently sensitized xS1-M1-80 cells to mitoxantrone and topotecan. These results suggest that S1-M1-80 cell xenografts in nude mice retain their original cytological characteristics at 9 weeks. Thus, this model could serve as a good system for further investigation of ABCG2-mediated MDR. PMID:22360854

  16. Advanced ion beam calorimetry for the test facility ELISE

    NASA Astrophysics Data System (ADS)

    Nocentini, R.; Bonomo, F.; Pimazzoni, A.; Fantz, U.; Franzen, P.; Fröschle, M.; Heinemann, B.; Pasqualotto, R.; Riedl, R.; Ruf, B.; Wünderlich, D.

    2015-04-01

    The negative ion source test facility ELISE (Extraction from a Large Ion Source Experiment) is in operation since beginning of 2013 at the Max-Planck-Institut für Plasmaphysik (IPP) in Garching bei München. The large radio frequency driven ion source of ELISE is about 1×1 m2 in size (1/2 the ITER source) and can produce a plasma for up to 1 h. Negative ions can be extracted and accelerated by an ITER-like extraction system made of 3 grids with an area of 0.1 m2, for 10 s every 3 minutes. A total accelerating voltage of up to 60 kV is available, i.e. a maximum ion beam power of about 1.2 MW can be produced. ELISE is equipped with several beam diagnostic tools for the evaluation of the beam characteristics. In order to evaluate the beam properties with a high level of detail, a sophisticated diagnostic calorimeter has been installed in the test facility at the end of 2013, starting operation in January 2014. The diagnostic calorimeter is split into 4 copper plates with separate water calorimetry for each of the plates. Each calorimeter plate is made of 15×15 copper blocks, which act as many separate inertial calorimeters and are attached to a copper plate with an embedded cooling circuit. The block geometry and the connection with the cooling plate are optimized to accurately measure the time-averaged power of the 10 s ion beam. The surface of the blocks is covered with a black coating that allows infrared (IR) thermography which provides a 2D profile of the beam power density. In order to calibrate the IR thermography, 48 thermocouples are installed in as many blocks, arranged in two vertical and two horizontal rows. The paper describes the beam calorimetry in ELISE, including the methods used for the IR thermography, the water calorimetry and the analytical methods for beam profile evaluation. It is shown how the maximum beam inhomogeneity amounts to 13% in average. The beam divergence derived by IR thermography ranges between 1° and 4° and correlates

  17. Preferential synthesis of the G1m(1) allotype of IgG1 in the central nervous system of multiple sclerosis patients.

    PubMed

    Salier, J P; Goust, J M; Pandey, J P; Fudenberg, H H

    1981-09-18

    Quantitations of the G1m(1) and G1m(3) allotypic determinants of human immunoglobulin G were performed by radioimmunoassay on cerebrospinal fluid and serum samples from patients with multiple sclerosis and from patients with other neurological disorders. In multiple sclerosis patients that were heterozygous for these determinants, G1m(1) concentration in the cerebrospinal fluid was greatly increased-reflected by an increased ratio of G1m(1)-in comparison with that of patients with other neurological disorders. These results suggest that in the heterozygous multiple sclerosis patients, most of the plasma cells in the central nervous system that secrete oligoclonal immunoglobulin G preferentially synthesize G1m(1) IgG1 molecules. PMID:6973823

  18. Fan-beam intensity modulated proton therapy

    SciTech Connect

    Hill, Patrick; Westerly, David; Mackie, Thomas

    2013-11-15

    Purpose: This paper presents a concept for a proton therapy system capable of delivering intensity modulated proton therapy using a fan beam of protons. This system would allow present and future gantry-based facilities to deliver state-of-the-art proton therapy with the greater normal tissue sparing made possible by intensity modulation techniques.Methods: A method for producing a divergent fan beam of protons using a pair of electromagnetic quadrupoles is described and particle transport through the quadrupole doublet is simulated using a commercially available software package. To manipulate the fan beam of protons, a modulation device is developed. This modulator inserts or retracts acrylic leaves of varying thickness from subsections of the fan beam. Each subsection, or beam channel, creates what effectively becomes a beam spot within the fan area. Each channel is able to provide 0–255 mm of range shift for its associated beam spot, or stop the beam and act as an intensity modulator. Results of particle transport simulations through the quadrupole system are incorporated into the MCNPX Monte Carlo transport code along with a model of the range and intensity modulation device. Several design parameters were investigated and optimized, culminating in the ability to create topotherapy treatment plans using distal-edge tracking on both phantom and patient datasets.Results: Beam transport calculations show that a pair of electromagnetic quadrupoles can be used to create a divergent fan beam of 200 MeV protons over a distance of 2.1 m. The quadrupole lengths were 30 and 48 cm, respectively, with transverse field gradients less than 20 T/m, which is within the range of water-cooled magnets for the quadrupole radii used. MCNPX simulations of topotherapy treatment plans suggest that, when using the distal edge tracking delivery method, many delivery angles are more important than insisting on narrow beam channel widths in order to obtain conformal target coverage

  19. Fan-beam intensity modulated proton therapy

    PubMed Central

    Hill, Patrick; Westerly, David; Mackie, Thomas

    2013-01-01

    Purpose: This paper presents a concept for a proton therapy system capable of delivering intensity modulated proton therapy using a fan beam of protons. This system would allow present and future gantry-based facilities to deliver state-of-the-art proton therapy with the greater normal tissue sparing made possible by intensity modulation techniques. Methods: A method for producing a divergent fan beam of protons using a pair of electromagnetic quadrupoles is described and particle transport through the quadrupole doublet is simulated using a commercially available software package. To manipulate the fan beam of protons, a modulation device is developed. This modulator inserts or retracts acrylic leaves of varying thickness from subsections of the fan beam. Each subsection, or beam channel, creates what effectively becomes a beam spot within the fan area. Each channel is able to provide 0–255 mm of range shift for its associated beam spot, or stop the beam and act as an intensity modulator. Results of particle transport simulations through the quadrupole system are incorporated into the MCNPX Monte Carlo transport code along with a model of the range and intensity modulation device. Several design parameters were investigated and optimized, culminating in the ability to create topotherapy treatment plans using distal-edge tracking on both phantom and patient datasets. Results: Beam transport calculations show that a pair of electromagnetic quadrupoles can be used to create a divergent fan beam of 200 MeV protons over a distance of 2.1 m. The quadrupole lengths were 30 and 48 cm, respectively, with transverse field gradients less than 20 T/m, which is within the range of water-cooled magnets for the quadrupole radii used. MCNPX simulations of topotherapy treatment plans suggest that, when using the distal edge tracking delivery method, many delivery angles are more important than insisting on narrow beam channel widths in order to obtain conformal target coverage

  20. COLLIDING CRYSTALLINE BEAMS.

    SciTech Connect

    WEI, J.

    1998-06-26

    The understanding of crystalline beams has advanced to the point where one can now, with reasonable confidence, undertake an analysis of the luminosity of colliding crystalline beams. Such a study is reported here. It is necessary to observe the criteria, previously stated, for the creation and stability of crystalline beams. This requires, firstly, the proper design of a lattice. Secondly, a crystal must be formed, and this can usually be done at various densities. Thirdly, the crystals in a colliding-beam machine are brought into collision. We study all of these processes using the molecular dynamics (MD) method. The work parallels what was done previously, but the new part is to study the crystal-crystal interaction in collision. We initially study the zero-temperature situation. If the beam-beam force (or equivalent tune shift) is too large then overlapping crystals can not be created (rather two spatially separated crystals are formed). However, if the beam-beam force is less than but comparable to that of the space-charge forces between the particles, we find that overlapping crystals can be formed and the beam-beam tune shift can be of the order of unity. Operating at low but non-zero temperature can increase the luminosity by several orders of magnitude over that of a usual collider. The construction of an appropriate lattice, and the development of adequately strong cooling, although theoretically achievable, is a challenge in practice.

  1. Colliding Crystalline Beams

    SciTech Connect

    Wei, Jie; Sessler, A.M.

    1998-06-01

    The understanding of crystalline beams has advanced to the point where one can now, with reasonable confidence, undertake an analysis of the luminosity of colliding crystalline beams. Such a study is reported here. It is necessary to observe the criteria, previously stated, for the creation and stability of crystalline beams. This requires, firstly, the proper design of a lattice. Secondly, a crystal must be formed, and this can usually be done at various densities. Thirdly, the crystals in a colliding-beam machine are brought into collision. We study all of these processes using the molecular dynamics (MD) method. The work parallels what was done previously, but the new part is to study the crystal-crystal interaction in collision. We initially study the zero-temperature situation. If the beam-beam force (or equivalent tune shift) is too large then over-lapping crystals can not be created (rather two spatially separated crystals are formed). However, if the beam-beam force is less than but comparable to that of the space-charge forces between the particles, we find that overlapping crystals can be formed and the beam-beam tune shift can be of the order of unity. Operating at low but non-zero temperature can increase the luminosity by several orders of magnitude over that of a usual collider. The construction of an appropriate lattice, and the development of adequately strong coding, although theoretically achievable, is a challenge in practice.

  2. Tectonic and Volcanic Character of the Endeavour Ridge Axis From 1-m Resolution AUV Multibeam Mapping Surveys

    NASA Astrophysics Data System (ADS)

    Caress, D. W.; Clague, D. A.; Thomas, H.; Thompson, D.; Calarco, M.; Holden, J. F.; Butterfield, D. A.

    2008-12-01

    High-resolution seafloor mapping surveys were conducted on the Endeavour Ridge using the MBARI AUV D. Allan. B. during R/V Atlantis cruise AT15-36. The four surveys had a combined bottom time of about 46 hours, collected data along 238 km of trackline, and mapped roughly 35 km2 with 200 kHz multibeam bathymetry and 100 kHz chirp sidescan. The bathymetry data have a 1-m lateral resolution and 0.1-m vertical precision. The surveys focused on the axial valley from 48°0.0' to 47°53.1'N or from 4.3 km south of the Mothra vent field to 0.5 km north of the Sasquatch vent field. We also mapped the western flank of the ridge between the Mothra and High Rise vent fields. The AUV is navigated using an inertial navigation system (INS) aided by Doppler Velocity Log (DVL) estimates of velocity over bottom. For these deep-water surveys, the initial AUV location derives from USBL fixes communicated to the vehicle by acoustic modem. Cross- correlation of bathymetric features in overlapping or crossing swaths allowed solution for an optimal navigation model that is internally self-consistent and accurate to the bathymetric resolution of 1 m. The Endeavour segment of the Juan de Fuca Ridge is characterized by a 300 m to 1500 m wide and 70 m to 140 m deep axial valley. This segment has long been interpreted as a currently tectonically dominated end member of intermediate rate spreading centers, which are thought to undergo cycles of tectonically and volcanically dominated spreading. The new surveys provide high-resolution bathymetry of the axial valley along a 13.5 km long section of the spreading center, and of the axis flanks along a 4.5 km section. The axial valley is highly dissected by fissures and normal faults throughout the survey length. There is no evidence for recent constructional volcanism south of the Mothra vent field. From Mothra northward to the Sasquatch vent field, six recognizable lava flows and drained lava lakes are found along the axis, most partly fissured

  3. Acute alcohol intoxication increases atrogin-1 and MuRF1 mRNA without increasing proteolysis in skeletal muscle

    PubMed Central

    Vary, Thomas C.; Frost, Robert A.; Lang, Charles H.

    2008-01-01

    Acute alcohol intoxication decreases muscle protein synthesis, but there is a paucity of data on the ability of alcohol to regulate muscle protein degradation. Furthermore, various types of atrophic stimuli appear to regulate ubiquitin-proteasome-dependent proteolysis by increasing the muscle-specific E3 ligases atrogin-1 and MuRF1 (i.e., “atrogenes”). Therefore, the present study was designed to test the hypothesis that acute alcohol intoxication increases atrogene expression leading to an elevated rate of muscle protein breakdown. In male rats, the intraperitoneal injection of alcohol dose- and time-dependently increased atrogin-1 and MuRF1 mRNA in gastrocnemius, the latter of which was most pronounced. A comparable change was absent in the soleus and heart. The ability of in vivo-administered ethanol to increase atrogene expression was independent of the route of alcohol administration (intraperitoneal vs. oral), as well as of nutritional status (fed vs. fasted) and gender (male vs. female). The increase in atrogin-1 and MuRF1 was independent of alcohol metabolism, and the overproduction of endogenous glucocorticoids and could not be prevented by maintaining the circulating concentration of insulin-like growth factor-I. Despite marked changes in atrogene expression, acute alcohol in vivo did not alter the release of either 3-methylhistidine (MH) or tyrosine from the isolated perfused hindlimb, suggesting that the rate of muscle proteolysis remains unchanged. Moreover, alcohol did not increase the directly determined rate of protein degradation in isolated epitrochlearis muscles or cultured myocytes. Finally, no increase in atrogene expression or 3-MH release was detected in muscle from rats fed an alcohol-containing diet. Our results indicate that although acute alcohol intoxication increases atrogin-1 and MuRF1 mRNA preferentially in fast-twitch skeletal muscle, this change was not associated with increased rates of muscle proteolysis. Therefore, the loss

  4. In situ expression of intercellular adhesion molecule-1 (ICAM-1) mRNA in calves with acute Pasteurella haemolytica pneumonia.

    PubMed

    Radi, Z A; Register, K B; Lee, E K; Kehrli, M E; Brogden, K A; Gallup, J M; Ackermann, M R

    1999-09-01

    The in situ expression of intercellular adhesion molecule-1 (ICAM-1) mRNA in normal and pneumonic lung tissues of Holstein calves with bovine leukocyte adhesion deficiency (BLAD) was compared with that of age-matched non-BLAD Holstein calves by in situ hybridization. Twenty-four Holstein calves (both BLAD and non-BLAD) were randomly assigned to one of two experimental groups and inoculated intrabronchially with Pasteurella haemolytica or pyrogen-free saline. Lung tissues were collected and fixed in 10% neutral formalin at 2 or 4 hours postinoculation (PI). The expression and distribution of ICAM-1 mRNA in the different cell types of the lung tissue was detected by in situ hybridization with a 307-base-pair bovine ICAM-1 riboprobe. In lungs of both non-BLAD and BLAD saline-inoculated calves, ICAM-1 expression was present in epithelial cells but occurred in <30% of cells in bronchi, bronchioles, and alveoli. ICAM-1 expression in vascular endothelial cells was present in <30% of cells in pulmonary arteries and veins. The expression of ICAM-1 was significantly greater (>60% of cells) in bronchiolar and alveolar epithelial cells and pulmonary endothelial cells of arteries and veins in both BLAD and non-BLAD calves inoculated with P. haemolytica. Bronchiolar epithelium had the highest intensity of mRNA expression and highest percentage of cells that were stained, whereas bronchial epithelium had the lowest intensity and percentage of cells stained. Most alveolar macrophages and neutrophils in infected lungs also expressed ICAM-1. ICAM-1 expression was generally increased in infected BLAD calves at 2 hours PI as compared with non-BLAD calves but not at 4 hours PI. The increased expression of ICAM-1 during acute P. haemolytica pneumonia in calves suggests that ICAM-1 is upregulated and may play a role in leukocyte infiltration. The extent of ICAM-1 expression in P. haemolytica-inoculated calves with BLAD was initially enhanced but otherwise similar to that in non

  5. Hermite-Gaussian beams with self-forming spiral phase distribution

    NASA Astrophysics Data System (ADS)

    Zinchik, Alexander A.; Muzychenko, Yana B.

    2014-05-01

    Spiral laser beams is a family of laser beams that preserve the structural stability up to scale and rotate with the propagation. Properties of spiral beams are of practical interest for laser technology, medicine and biotechnology. Researchers use a spiral beams for movement and manipulation of microparticles. Spiral beams have a complicated phase distribution in cross section. This paper describes the results of analytical and computer simulation of Hermite-Gaussian beams with self-forming spiral phase distribution. In the simulation used a laser beam consisting of the sum of the two modes HG TEMnm and TEMn1m1. The coefficients n1, n, m1, m were varied. Additional phase depending from the coefficients n, m, m1, n1 imposed on the resulting beam. As a result, formed the Hermite Gaussian beam phase distribution which takes the form of a spiral in the process of distribution. For modeling was used VirtualLab 5.0 (manufacturer LightTrans GmbH).

  6. Laser beam shaping techniques

    SciTech Connect

    DICKEY,FRED M.; WEICHMAN,LOUIS S.; SHAGAM,RICHARD N.

    2000-03-16

    Industrial, military, medical, and research and development applications of lasers frequently require a beam with a specified irradiance distribution in some plane. A common requirement is a laser profile that is uniform over some cross-section. Such applications include laser/material processing, laser material interaction studies, fiber injection systems, optical data image processing, lithography, medical applications, and military applications. Laser beam shaping techniques can be divided into three areas: apertured beams, field mappers, and multi-aperture beam integrators. An uncertainty relation exists for laser beam shaping that puts constraints on system design. In this paper the authors review the basics of laser beam shaping and present applications and limitations of various techniques.

  7. Particle beam injection system

    DOEpatents

    Jassby, Daniel L.; Kulsrud, Russell M.

    1977-01-01

    This invention provides a poloidal divertor for stacking counterstreaming ion beams to provide high intensity colliding beams. To this end, method and apparatus are provided that inject high energy, high velocity, ordered, atomic deuterium and tritium beams into a lower energy, toroidal, thermal equilibrium, neutral, target plasma column that is magnetically confined along an endless magnetic axis in a strong restoring force magnetic field having helical field lines to produce counterstreaming deuteron and triton beams that are received bent, stacked and transported along the endless axis, while a poloidal divertor removes thermal ions and electrons all along the axis to increase the density of the counterstreaming ion beams and the reaction products resulting therefrom. By balancing the stacking and removal, colliding, strong focused particle beams, reaction products and reactions are produced that convert one form of energy into another form of energy.

  8. SR proteins SRp20 and 9G8 contribute to efficient export of herpes simplex virus 1 mRNAs

    SciTech Connect

    Escudero-Paunetto, Laurimar; Li Ling; Hernandez, Felicia P.; Sandri-Goldin, Rozanne M.

    2010-06-05

    Herpes simplex virus 1 (HSV-1) mRNAs are exported to the cytoplasm through the export receptor TAP/NFX1. HSV-1 multifunctional protein ICP27 interacts with TAP/NXF1, binds viral RNAs, and is required for efficient viral RNA export. In ICP27 mutant infections, viral RNA export is reduced but not ablated, indicating that other export adaptors can aid in viral RNA export. Export adaptor protein Aly/REF is recruited to viral replication compartments, however, Aly/REF knockdown has little effect on viral RNA export. SR proteins SRp20 and 9G8 interact with TAP/NXF1 and mediate export of some cellular RNAs. We report that siRNA knockdown of SRp20 or 9G8 resulted in about a 10 fold decrease in virus yields and in nuclear accumulation of poly(A+) RNA. In infected cells depleted of SRp20, newly transcribed Bromouridine-labeled RNA also accumulated in the nucleus. We conclude that SRp20 and 9G8 contribute to HSV-1 RNA export.

  9. CPEB1 restrains proliferation of Glioblastoma cells through the regulation of p27(Kip1) mRNA translation.

    PubMed

    Galardi, Silvia; Petretich, Massimo; Pinna, Guillaume; D'Amico, Silvia; Loreni, Fabrizio; Michienzi, Alessandro; Groisman, Irina; Ciafrè, Silvia Anna

    2016-01-01

    The cytoplasmic element binding protein 1 (CPEB1) regulates many important biological processes ranging from cell cycle control to learning and memory formation, by controlling mRNA translation efficiency via 3' untranslated regions (3'UTR). In the present study, we show that CPEB1 is significantly downregulated in human Glioblastoma Multiforme (GBM) tissues and that the restoration of its expression impairs glioma cell lines growth. We demonstrate that CPEB1 promotes the expression of the cell cycle inhibitor p27(Kip1) by specifically targeting its 3'UTR, and competes with miR-221/222 binding at an overlapping site in the 3'UTR, thus impairing miR-221/222 inhibitory activity. Upon binding to p27(Kip1) 3'UTR, CPEB1 promotes elongation of poly-A tail and the subsequent translation of p27(Kip1) mRNA. This leads to higher levels of p27(Kip1) in the cell, in turn significantly inhibiting cell proliferation, and confers to CPEB1 a potential value as a tumor suppressor in Glioblastoma. PMID:27142352

  10. Synthesis and characterization of a novel eco-friendly corrosion inhibition for mild steel in 1 M hydrochloric acid.

    PubMed

    Al-Amiery, Ahmed A; Binti Kassim, Fatin A; Kadhum, Abdul Amir H; Mohamad, Abu Bakar

    2016-01-01

    The acid corrosion inhibition process of mild steel in 1 M HCl by azelaic acid dihydrazide has been investigated using electrochemical impedance spectroscopy (EIS), potentiodynamic polarization, open circuit potential (OCP) and electrochemical frequency modulation (EFM). Azelaic acid dihydrazide was synthesized, and its chemical structure was elucidated and confirmed using spectroscopic techniques (infrared, nuclear magnetic resonance and mass spectroscopy). Potentiodynamic polarization studies indicate that azelaic acid dihydrazide is a mixed-type inhibitor. The inhibition efficiency increases with increased inhibitor concentration and reaches its maximum of 93% at 5 × 10(-3) M. The adsorption of the inhibitor on a mild steel surface obeys Langmuir's adsorption isotherm. The effect of te perature on corrosion behavior in the presence of 5 × 10(-3) M inhibitor was studied in the temperature range of 30-60 °C. The results indicated that inhibition efficiencies were enhanced with an increase in concentration of inhibitor and decreased with a rise in temperature. To inspect the surface morphology of inhibitor film on the mild steel surface, scanning electron microscopy (SEM) was used before and after immersion in 1.0 M HCl. PMID:26795066

  11. First generation solar adaptive optics system for 1-m New Vacuum Solar Telescope at Fuxian Solar Observatory

    NASA Astrophysics Data System (ADS)

    Rao, Chang-Hui; Zhu, Lei; Rao, Xue-Jun; Zhang, Lan-Qiang; Bao, Hua; Ma, Xue-An; Gu, Nai-Ting; Guan, Chun-Lin; Chen, Dong-Hong; Wang, Cheng; Lin, Jun; Jin, Zen-Yu; Liu, Zhong

    2016-02-01

    The first generation solar adaptive optics (AO) system, which consists of a fine tracking loop with a tip-tilt mirror (TTM) and a correlation tracker, and a high-order correction loop with a 37-element deformable mirror (DM), a correlating Shack-Hartmann (SH) wavefront sensor (WFS) based on the absolute difference algorithm and a real time controller (RTC), has been developed and installed at the 1-m New Vacuum Solar Telescope (NVST) that is part of Fuxian Solar Observatory (FSO). Compared with the 37-element solar AO system developed for the 26-cm Solar Fine Structure Telescope, administered by Yunnan Astronomical Observatories, this AO system has two updates: one is the subaperture arrangement of the WFS changed from square to hexagon; the other is the high speed camera of the WFS and the corresponding real time controller. The WFS can be operated at a frame rate of 2100 Hz and the error correction bandwidth can exceed 100 Hz. After AO correction, the averaged residual image motion and the averaged RMS wavefront error are reduced to 0.06″ and 45 nm, respectively. The results of on-sky testing observations demonstrate better contrast and finer structures of the images taken with AO than those without AO.

  12. Improved Comparative Signature Diagrams to Evaluate Similarity of Storage Stability Profiles of Different IgG1 mAbs.

    PubMed

    Kim, Jae Hyun; Joshi, Sangeeta B; Esfandiary, Reza; Iyer, Vidyashankara; Bishop, Steven M; Volkin, David B; Middaugh, Charles Russell

    2016-03-01

    For therapeutic protein analytical studies related to evaluating lot-to-lot variability, different processes and/or formulations, or biosimilars, there is growing interest in applying novel data visualization tools for fingerprint analysis to identify statistically significant differences between 2 samples. Comparative Signature Diagrams (CSDs) were previously developed to display such differences as colored contour plots using a variety of biophysical data sets. In this study, several improvements are proposed to enhance readability and quantitative determinations of CSDs using protein stability data from more commonly used analytical methods such as size exclusion chromatography and capillary isoelectric focusing. To demonstrate the effectiveness of improved CSDs for data visualization, an accelerated and real-time stability study was set up for an IgG1 mAb (mAb A) and its corresponding triple mutant (mAb E). The stability profiles of both mAbs were compared for differences in aggregation (size exclusion chromatography) and charge heterogeneity (capillary isoelectric focusing) profiles over time. Both traditional data analysis and the improved CSDs conclude that the triple mutant mAb E is more susceptible to physicochemical degradation than mAb A under accelerated conditions. The current abilities and limitations of CSDs to provide fingerprint analysis of protein stability profiles to facilitate the determination of similarity versus nonsimilarity between samples is discussed. PMID:26886311

  13. Increased production of cellulases and xylanases by Penicillium echinulatum S1M29 in batch and fed-batch culture.

    PubMed

    dos Reis, Laísa; Fontana, Roselei Claudete; Delabona, Priscila da Silva; da Silva Lima, Deise Juliana; Camassola, Marli; Pradella, José Geraldo da Cruz; Dillon, Aldo José Pinheiro

    2013-10-01

    The development of more productive strains of microorganisms and processes that increase enzyme levels can contribute to the economically efficient production of second generation ethanol. To this end, cellulases and xylanases were produced with the S1M29 mutant strain of Penicillium echinulatum, using different concentrations of cellulose (20, 40, and 60 g L(-1)) in batch and fed-batch processes. The highest activities of FPase (8.3 U mL(-1)), endoglucanases (37.3 U mL(-1)), and xylanases (177 U mL(-1)) were obtained in fed-batch cultivation with 40 g L(-1) of cellulose. The P. echinulatum enzymatic broth and the commercial enzyme Cellic CTec2 were tested for hydrolysis of pretreated sugar cane bagasse. Maximum concentrations of glucose and xylose were achieved after 72 h of hydrolysis. Glucose yields of 28.0% and 27.0% were obtained using the P. echinulatum enzymatic extract and Cellic CTec2, respectively. PMID:23973981

  14. Pharmacophore Modeling and Virtual Screening for Novel Acidic Inhibitors of Microsomal Prostaglandin E2 Synthase-1 (mPGES-1)

    PubMed Central

    2011-01-01

    Microsomal prostaglandin E2 synthase-1 (mPGES-1) catalyzes prostaglandin E2 formation and is considered as a potential anti-inflammatory pharmacological target. To identify novel chemical scaffolds active on this enzyme, two pharmacophore models for acidic mPGES-1 inhibitors were developed and theoretically validated using information on mPGES-1 inhibitors from literature. The models were used to screen chemical databases supplied from the National Cancer Institute (NCI) and the Specs. Out of 29 compounds selected for biological evaluation, nine chemically diverse compounds caused concentration-dependent inhibition of mPGES-1 activity in a cell-free assay with IC50 values between 0.4 and 7.9 μM, respectively. Further pharmacological characterization revealed that also 5-lipoxygenase (5-LO) was inhibited by most of these active compounds in cell-free and cell-based assays with IC50 values in the low micromolar range. Together, nine novel chemical scaffolds inhibiting mPGES-1 are presented that may possess anti-inflammatory properties based on the interference with eicosanoid biosynthesis. PMID:21466167

  15. Structural Characterization of IgG1 mAb Aggregates and Particles Generated under Various Stress Conditions

    PubMed Central

    Telikepalli, Srivalli N.; Kumru, Ozan S.; Kalonia, Cavan; Esfandiary, Reza; Joshi, Sangeeta B.; Middaugh, C. Russell; Volkin, David B.

    2014-01-01

    IgG1 mAb solutions were prepared with and without sodium chloride and subjected to different environmental stresses. Formation of aggregates and particles of varying size was monitored by a combination of size exclusion chromatography (SEC), Nanosight Tracking Analysis (NTA), Micro-flow Imaging (MFI), turbidity, and visual assessments. Stirring and heating induced the highest concentration of particles. In general, the presence of NaCl enhanced this effect. The morphology of the particles formed from mAb samples exposed to different stresses was analyzed from TEM and MFI images. Shaking samples without NaCl generated the most fibrillar particles, while stirring created largely spherical particles. The composition of the particles was evaluated for covalent cross-linking by SDS-PAGE, overall secondary structure by FTIR microscopy, and surface apolarity by extrinsic fluorescence spectroscopy. Freeze-thaw and shaking led to particles containing protein with native-like secondary structure. Heating and stirring produced IgG1 containing aggregates and particles with some non-native disulfide crosslinks, varying levels of intermolecular beta sheet content, and increased surface hydrophobicity. These results highlight the importance of evaluating protein particle morphology and composition, in addition to particle number and size distributions, to better understand the effect of solution conditions and environmental stresses on the formation of protein particles in mAb solutions. PMID:24452866

  16. Decreased RB1 mRNA, Protein, and Activity Reflect Obesity-Induced Altered Adipogenic Capacity in Human Adipose Tissue

    PubMed Central

    Moreno-Navarrete, José María; Petrov, Petar; Serrano, Marta; Ortega, Francisco; García-Ruiz, Estefanía; Oliver, Paula; Ribot, Joan; Ricart, Wifredo; Palou, Andreu; Bonet, Mª Luisa; Fernández-Real, José Manuel

    2013-01-01

    Retinoblastoma (Rb1) has been described as an essential player in white adipocyte differentiation in mice. No studies have been reported thus far in human adipose tissue or human adipocytes. We aimed to investigate the possible role and regulation of RB1 in adipose tissue in obesity using human samples and animal and cell models. Adipose RB1 (mRNA, protein, and activity) was negatively associated with BMI and insulin resistance (HOMA-IR) while positively associated with the expression of adipogenic genes (PPARγ and IRS1) in both visceral and subcutaneous human adipose tissue. BMI increase was the main contributor to adipose RB1 downregulation. In rats, adipose Rb1 gene expression and activity decreased in parallel to dietary-induced weight gain and returned to baseline with weight loss. RB1 gene and protein expression and activity increased significantly during human adipocyte differentiation. In fully differentiated adipocytes, transient knockdown of Rb1 led to loss of the adipogenic phenotype. In conclusion, Rb1 seems to play a permissive role for human adipose tissue function, being downregulated in obesity and increased during differentiation of human adipocytes. Rb1 knockdown findings further implicate Rb1 as necessary for maintenance of adipogenic characteristics in fully differentiated adipocytes. PMID:23315497

  17. Final Report for the Study on S-Implanted Alloy 22 in 1 M NaCl Solutions

    SciTech Connect

    Windisch, Charles F.; Baer, Donald R.; Jones, R. H.; Engelhard, Mark H.

    2005-11-01

    The objective of this study was to examine the effects of high levels of S in the near-surface region on the passivity of Alloy 22, a corrosion resistant Ni-Cr-Mo alloy, in deaerated 1 M NaCl solution. Near-surface concentrations of S up to 2 at.% were achieved in Alloy 22 test specimens by implanting them with S. The S-implanted samples were then evaluated in short-term electrochemical tests in the salt solution and subsequently analyzed with X-ray Photoelectron Spectroscopy (XPS) for film thickness and composition. Specimens tested included non-implanted and annealed Alloy 22 samples, samples implanted with S, and “blanks” implanted with Ar as an ion that would simulate the “damage” of S implantation without the chemical effect. A sample of S-implanted Alloy 22 was also exposed to solution for 29 days and analyzed for evidence of S accumulation at the surface over longer times.

  18. CPEB1 restrains proliferation of Glioblastoma cells through the regulation of p27Kip1 mRNA translation

    PubMed Central

    Galardi, Silvia; Petretich, Massimo; Pinna, Guillaume; D’Amico, Silvia; Loreni, Fabrizio; Michienzi, Alessandro; Groisman, Irina; Ciafrè, Silvia Anna

    2016-01-01

    The cytoplasmic element binding protein 1 (CPEB1) regulates many important biological processes ranging from cell cycle control to learning and memory formation, by controlling mRNA translation efficiency via 3′ untranslated regions (3′UTR). In the present study, we show that CPEB1 is significantly downregulated in human Glioblastoma Multiforme (GBM) tissues and that the restoration of its expression impairs glioma cell lines growth. We demonstrate that CPEB1 promotes the expression of the cell cycle inhibitor p27Kip1 by specifically targeting its 3′UTR, and competes with miR-221/222 binding at an overlapping site in the 3′UTR, thus impairing miR-221/222 inhibitory activity. Upon binding to p27Kip1 3′UTR, CPEB1 promotes elongation of poly-A tail and the subsequent translation of p27Kip1 mRNA. This leads to higher levels of p27Kip1 in the cell, in turn significantly inhibiting cell proliferation, and confers to CPEB1 a potential value as a tumor suppressor in Glioblastoma. PMID:27142352

  19. Variation in myogenic differentiation 1 mRNA abundance is associated with beef tenderness in Nelore cattle.

    PubMed

    Tizioto, P C; Coutinho, L L; Mourão, G B; Gasparin, G; Malagó-Jr, W; Bressani, F A; Tullio, R R; Nassu, R T; Taylor, J F; Regitano, L C A

    2016-08-01

    The myogenic differentiation 1 gene (MYOD1) has a key role in skeletal muscle differentiation and composition through its regulation of the expression of several muscle-specific genes. We first used a general linear mixed model approach to evaluate the association of MYOD1 expression levels on individual beef tenderness phenotypes. MYOD1mRNA levels measured by quantitative polymerase chain reactions in 136 Nelore steers were significantly associated (P ≤ 0.01) with Warner-Bratzler shear force, measured on the longissimus dorsi muscle after 7 and 14 days of beef aging. Transcript abundance for the muscle regulatory gene MYOD1 was lower in animals with more tender beef. We also performed a co-expression network analysis using whole transcriptome sequence data generated from 30 samples of longissimus muscle tissue to identify genes that are potentially regulated by MYOD1. The effect of MYOD1 gene expression on beef tenderness may emerge from its function as an activator of muscle-specific gene transcription such as for the serum response factor (C-fos serum response element-binding transcription factor) gene (SRF), which determines muscle tissue development, composition, growth and maturation. PMID:27028139

  20. Mammalian target of rapamycin complex 1 (mTORC1) Is required for mouse spermatogonial differentiation in vivo.

    PubMed

    Busada, Jonathan T; Niedenberger, Bryan A; Velte, Ellen K; Keiper, Brett D; Geyer, Christopher B

    2015-11-01

    Spermatogonial stem cells (SSCs) must balance self-renewal with production of transit-amplifying progenitors that differentiate in response to retinoic acid (RA) before entering meiosis. This self-renewal vs. differentiation spermatogonial fate decision is critical for maintaining tissue homeostasis, as imbalances cause spermatogenesis defects that can lead to human testicular cancer or infertility. A great deal of effort has been exerted to understand how the SSC population is maintained. In contrast, little is known about the essential program of differentiation initiated by retinoic acid (RA) that precedes meiosis, and the pathways and proteins involved are poorly defined. We recently reported a novel role for RA in stimulating the PI3/AKT/mTOR kinase signaling pathway to activate translation of repressed mRNAs such as Kit. Here, we examined the requirement for mTOR complex 1 (mTORC1) in mediating the RA signal to direct spermatogonial differentiation in the neonatal testis. We found that in vivo inhibition of mTORC1 by rapamycin blocked spermatogonial differentiation, which led to an accumulation of undifferentiated spermatogonia. In addition, rapamycin also blocked the RA-induced translational activation of mRNAs encoding KIT, SOHLH1, and SOHLH2 without affecting expression of STRA8. These findings highlight dual roles for RA in germ cell development - transcriptional activation of genes, and kinase signaling to stimulate translation of repressed messages required for spermatogonial differentiation. PMID:26254600

  1. Secondary Structure of a Conserved Domain in an Intron of Influenza A M1 mRNA

    PubMed Central

    2014-01-01

    Influenza A virus utilizes RNA throughout infection. Little is known, however, about the roles of RNA structures. A previous bioinformatics survey predicted multiple regions of influenza A virus that are likely to generate evolutionarily conserved and stable RNA structures. One predicted conserved structure is in the pre-mRNA coding for essential proteins, M1 and M2. This structure starts 79 nucleotides downstream of the M2 mRNA 5′ splice site. Here, a combination of biochemical structural mapping, mutagenesis, and NMR confirms the predicted three-way multibranch structure of this RNA. Imino proton NMR spectra reveal no change in secondary structure when 80 mM KCl is supplemented with 4 mM MgCl2. Optical melting curves in 1 M NaCl and in 100 mM KCl with 10 mM MgCl2 are very similar, with melting temperatures ∼14 °C higher than that for 100 mM KCl alone. These results provide a firm basis for designing experiments and potential therapeutics to test for function in cell culture. PMID:25026548

  2. Real time controller for 37-element low-order solar adaptive optics system at 1m new vacuum solar telescope

    NASA Astrophysics Data System (ADS)

    Zhu, Lei; Gu, Naiting; Chen, Shanqiu; Zhang, Lanqiang; Wang, Xiaoyun; Rao, Xuejun; Li, Mei; Rao, Changhui

    A low-order solar adaptive optics (AO) system had been successfully built and installed at 1m New Vacuum Solar Telescope (NVST) of Full-shine Lake Solar Observatory. The real time controller (RTC) of the AO system, which consists of a correlation tracker and a high-order wavefront correction controller, was developed. In this system, the absolute difference algorithm is used to detect wavefront gradients. A new architecture with field-programmable gate array (FPGA) and digital signal processor (DSP) for the real-time controller based on systolic array and pipeline was designed. The controller was integrated into the AO system and saw the first light on February 24th, 2011, using solar granulation as the beacon. Later, the AO-corrected high resolution sunspots images were obtained using sunspots as the beacon. The observational results show that the contrast and resolution of the solar images are improved evidently after the correction by the AO system. The design of the RTC and the observational results will be presented.

  3. Trehalose accumulation induced during the oxidative stress response is independent of TPS1 mRNA levels in Candida albicans.

    PubMed

    Zaragoza, Oscar; González-Párraga, Pilar; Pedreño, Yolanda; Alvarez-Peral, Francisco J; Argüelles, Juan-Carlos

    2003-06-01

    Growing cells of the Candida albicans trehalose-deficient mutant tps1/tps1 were extremely sensitive to severe oxidative stress exposure (H2O2). However, their viability was not affected after saline stress or heat-shock treatments, being roughly equivalent to that of the parental strain. In wild-type cells, these adverse conditions induced the intracellular accumulation of trehalose together with activation of trehalose-6P synthase, whereas the endogenous trehalose content and the corresponding biosynthetic activity were barely detectable in the tps1/tps1 mutant. The addition of cycloheximide did not prevent the marked induction of trehalose-6P synthase activity. Furthermore, the presence of H2O2 decreased the level of TPS1 mRNA expression. Hence, the conspicuous trehalose accumulation in response to oxidative stress is not induced by increased transcription of TPS1. Our results are consistent with a specific requirement of trehalose in order to withstand a severe oxidative stress in C. albicans, and suggest that trehalose accumulation observed under these conditions is a complex process that most probably involves post-translational modifications of the trehalose synthase complex. PMID:12783274

  4. Electrochemical Evaluation of Corrosion on Borided and Non-borided Steels Immersed in 1 M HCl Solution

    NASA Astrophysics Data System (ADS)

    Mejía-Caballero, I.; Martínez-Trinidad, J.; Palomar-Pardavé, M.; Romero-Romo, M.; Herrera-Hernández, H.; Herrera-Soria, O.; Campos Silva, I.

    2014-08-01

    In this study the corrosion resistances of AISI 1018 and AISI 304 borided and non-borided steels were estimated using polarization resistance and electrochemical impedance spectroscopy (EIS) techniques. Boriding of the steel samples was conducted using the powder-pack method at 1223 K with 6 h of exposure. Structural examinations of the surfaces of the borided steels showed the presence of a Fe2B layer with isolated FeB teeth on the AISI 1018 steel, whereas a compact layer of FeB/Fe2B was formed on the AISI 304 steel. Polarization resistance and EIS of the borided and non-borided steels surfaces were performed in a corrosive solution of 1 M HCl. The EIS data were analyzed during 43 days of exposure to the acid solution. Impedance curves obtained during this period for the borided and non-borided steels were modeled using equivalent electrical circuits. The results of both electrochemical techniques indicated that boride layers formed at the steel surfaces effectively protect the samples from the corrosive effects of HCl. The main corrosion processes observed on the boride layers were pitting and crevice corrosion.

  5. Identification of the 11 beta-hydroxysteroid dehydrogenase type 1 mRNA and protein in human mononuclear leukocytes.

    PubMed

    Fiore, C; Nardi, A; Dalla Valle, L; Pellati, D; Krozowski, Z; Colombo, L; Armanini, D

    2009-10-01

    The enzyme 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1) catalyzes the interconversion between inactive 11-ketoglucocorticoids and their active 11beta-hydroxy derivatives, such as cortisol and corticosterone. We have investigated the expression of 11beta-HSD1 in freshly isolated human peripheral mononuclear leukocytes (MNL). The presence of 11beta-HSD1 mRNA was demonstrated in total RNA by RT-PCR using specific primers designed on the 4th and 5th exons of the human 11beta-HSD1 gene. Fragments of the expected size were consistently detected on agarose gels, and sequencing showed complete identity with the corresponding sequence deposited in GenBank. The occurrence of 11beta-HSD1 protein was established by Western immunoblot analysis with a specific polyclonal antibody. Enzyme oxo-reductase activity was investigated by incubating 12 samples of MNL isolated from from 8 subjects with [3H]cortisone and formation of cortisol was established only in 4 subjects (yield range: 0.15-1.3%) after acetylation and TLC, blank subtraction and correction for losses. 18beta-Glycyrrhetinic acid, an inhibitor of 11 beta-HSD1, reduced cortisol production below detection limit. Dehydrogenase activity could not be demonstrated. It is suggested that, although enzyme activity of 11beta-HSD1 in circulating MNL is low, it is apparently ready for enhancement after MNL migration to sites of inflammation. PMID:19235128

  6. Wideband impedance spectroscopy from 1 mHz to 10 MHz by combination of four- and two-electrode methods

    NASA Astrophysics Data System (ADS)

    Volkmann, J.; Klitzsch, N.

    2015-03-01

    Impedance Spectroscopy (IS) measurements allow to study a wide range of polarization mechanisms associated with different frequency ranges. Experimental devices usually cover limited frequency ranges with sufficient accuracy. We propose (a) a combination of four-electrode and two-electrode devices and (b) a data combination and mutual verification procedure using the actual sample under test. Hereby, we cover a frequency range from 1 mHz to 10 MHz. The data combination relies on the precondition that any dispersive disturbance decayed at some mutual point within an overlapping frequency range between 1 Hz and 45 kHz. We validate our data combination procedure by IS measurements on simple reference systems and comparison with widely accepted model functions, e.g. the complex refractive index model (CRIM) for high frequency behavior and Kramers-Kronig relations in terms of data consistency. In this respect, our suggested processing approach is superior to two selected alternative approaches. We successfully adapt typical empirical model functions, e.g. multi-Cole-Cole, to the resulting wideband data to show that they are fully applicable for further data analysis.

  7. Control of in-situ Q by stress and water saturation, for shallow (< 1 m), unconsolidated sand

    NASA Astrophysics Data System (ADS)

    Lorenzo, J. M.; Crane, J. M.; Shen, J.

    2013-12-01

    Field investigations into the simultaneous effects of water saturation and stress on seismic attenuation are scarce. However, seismic attenuation may be used to place constraints on water saturation with depth, at least for homogenous, porous media. We use a publicly available seismic dataset [Lorenzo et al., 2013] collected in a mid-size sand tank (~6 x 9 x 0.44 m) for open evaluation of these relationships. In the presence of large Q gradients the assumed equivalency of Q between the raypaths of the reference and measured signals can lead to false Q estimates (e.g., < 0). We employ a modified spectral ratio method to estimate in-situ Q so that the average Q along the measured and reference ray paths differ. We estimate local Q values from average raypath Q values, penetration depths, and travel times. Local Q values (Qint) increase the most with depth (dQ/dz = 43 m-1) and stress (dQ/dσ = 0.0025/Pa) in dry sand and the least in partially saturated sand (dQ/dz = 10 -1m and dQ/dσ = 0.0013/Pa) where attenuation created by local fluid flow reaches a maximum. Anomalous Q deviations outside this range can be explained by a divergence in effective stress, attenuation mechanism, or lithology.

  8. Magnetic beam position monitor

    SciTech Connect

    Varfolomeev, A.A.; Ivanchenkov, S.N.; Khlebnikov, A.S.

    1995-12-31

    Many nondestructive beam position monitors are known. However, these devices can not be used for DC particle beam diagnostics. We investigated a method of beam diagnostics applicable for the operative control of DC high power e-beam inside closed waveguide. A design of the detector for determination of{open_quote} center of mass {close_quote} position of DC particle beam was developed. It was shown that the monitor can be used as a nondestructive method for the beam position control in resonators. Magnetic field of the particle beam outside a resonator is used. The detector consists of the steel yokes and magnetic field sensors. The sensors measure magnetic fluxes in the steel yokes fixed outside the resonator. When the particle beam changes its position, these magnetic fluxes also change. Beam displacement sensitivity of the monitor depends on the steel yoke dimensions. The detector sensitivity is equal to 1 Gauss/mm for the conditions adequate to the FOM-FEM project.

  9. ALEX neutral beam probe

    SciTech Connect

    Pourrezaei, K.

    1982-01-01

    A neutral beam probe capable of measuring plasma space potential in a fully 3-dimensional magnetic field geometry has been developed. This neutral beam was successfully used to measure an arc target plasma contained within the ALEX baseball magnetic coil. A computer simulation of the experiment was performed to refine the experimental design and to develop a numerical model for scaling the ALEX neutral beam probe to other cases of fully 3-dimensional magnetic field. Based on this scaling a 30 to 50 keV neutral cesium beam probe capable of measuring space potential in the thermal barrier region of TMX Upgrade was designed.

  10. Power beaming options

    NASA Technical Reports Server (NTRS)

    Rather, John D. G.

    1989-01-01

    Some large scale power beaming applications are proposed for the purpose of stimulating research. The first proposal is for a combination of large phased arrays on the ground near power stations and passive reflectors in geostationary orbit. The systems would beam excess electrical power in microwave form to areas in need of electrical power. Another proposal is to build solar arrays in deserts and beam the energy around the world. Another proposal is to use lasers to beam energy from earth to orbiting spacecraft.

  11. Broad beam ion implanter

    DOEpatents

    Leung, Ka-Ngo

    1996-01-01

    An ion implantation device for creating a large diameter, homogeneous, ion beam is described, as well as a method for creating same, wherein the device is characterized by extraction of a diverging ion beam and its conversion by ion beam optics to an essentially parallel ion beam. The device comprises a plasma or ion source, an anode and exit aperture, an extraction electrode, a divergence-limiting electrode and an acceleration electrode, as well as the means for connecting a voltage supply to the electrodes.

  12. Broad beam ion implanter

    DOEpatents

    Leung, K.N.

    1996-10-08

    An ion implantation device for creating a large diameter, homogeneous, ion beam is described, as well as a method for creating same, wherein the device is characterized by extraction of a diverging ion beam and its conversion by ion beam optics to an essentially parallel ion beam. The device comprises a plasma or ion source, an anode and exit aperture, an extraction electrode, a divergence-limiting electrode and an acceleration electrode, as well as the means for connecting a voltage supply to the electrodes. 6 figs.

  13. (Pulsed electron beam precharger)

    SciTech Connect

    Finney, W.C.; Shelton, W.N.

    1990-01-01

    This report discusses the following topics on electron beam guns: Precharger Modification; Installation of Charge vs. Radius Apparatus; High Concentration Aerosol Generation; and Data Acquisition and Analysis System.

  14. Astigmatic Bessel laser beams

    NASA Astrophysics Data System (ADS)

    Khonina, S. N.; Kotlyar, V. V.; Soifer, V. A.; Jefimovs, K.; Pääkkönen, P.; Turunen, J.

    2004-05-01

    The oblique incidence of a He-Ne laser beam onto a phase-only diffractive optical element (DOE) that simultaneously produces several unimode different-order Bessel beams propagating at various angles with respect to the optical axis is studied theoretically and experimentally. It is shown that, under obliquely incident illumination of a DOE that forms Bessel beams, the resulting astigmatic diffraction pattern can be used to unambiguously identify the direction of the Bessel beam's phase rotation and the order of the Bessel mode.

  15. Long-Range Beam-Beam Compensation in RHIC

    SciTech Connect

    Kim, Hyung Jin; Sen, Tanaji; Fischer, Wolfram; /Brookhaven

    2010-05-01

    In order to avoid the effects of long-range beam-beam interactions which produce beam blow-up and deteriorate beam life time, a compensation scheme with current carrying wires has been proposed. Two long-range beam-beam compensators were installed in RHIC rings in 2006. The effects of the compensators have been experimentally investigated. An indication was observed that the compensators are beneficial to beam life time in measurements performed in RHIC during 2009. In this paper, we report the effects of wire compensator on beam loss and emittance for proton-proton beams at collision energy.

  16. Aqueous corrosion of ion beam mixed Ta films on 13% chromium steel

    NASA Astrophysics Data System (ADS)

    Huang, N. K.

    1993-06-01

    The effect of aqueous corrosion of ion beam mixed Ta on 13 wt% chromium steel in 1M H 2SO 4 or 0.1N NaCl solution has been investigated. The results show that Ta ion mixing can evidently improve the corrosion resistance of chromium steel. The corrosion resistances of the ion beam mixed Ta films are affected by the nature of the substrates. Some suggestions are proposed according to microanalysis results by using SEM, RBS and XPS techniques.

  17. Phosphoproteomic Profiling of In Vivo Signaling in Liver by the Mammalian Target of Rapamycin Complex 1 (mTORC1)

    PubMed Central

    Demirkan, Gokhan; Yu, Kebing; Boylan, Joan M.; Salomon, Arthur R.; Gruppuso, Philip A.

    2011-01-01

    Background Our understanding of signal transduction networks in the physiological context of an organism remains limited, partly due to the technical challenge of identifying serine/threonine phosphorylated peptides from complex tissue samples. In the present study, we focused on signaling through the mammalian target of rapamycin (mTOR) complex 1 (mTORC1), which is at the center of a nutrient- and growth factor-responsive cell signaling network. Though studied extensively, the mechanisms involved in many mTORC1 biological functions remain poorly understood. Methodology/Principal Findings We developed a phosphoproteomic strategy to purify, enrich and identify phosphopeptides from rat liver homogenates. Using the anticancer drug rapamycin, the only known target of which is mTORC1, we characterized signaling in liver from rats in which the complex was maximally activated by refeeding following 48 hr of starvation. Using protein and peptide fractionation methods, TiO2 affinity purification of phosphopeptides and mass spectrometry, we reproducibly identified and quantified over four thousand phosphopeptides. Along with 5 known rapamycin-sensitive phosphorylation events, we identified 62 new rapamycin-responsive candidate phosphorylation sites. Among these were PRAS40, gephyrin, and AMP kinase 2. We observed similar proportions of increased and reduced phosphorylation in response to rapamycin. Gene ontology analysis revealed over-representation of mTOR pathway components among rapamycin-sensitive phosphopeptide candidates. Conclusions/Significance In addition to identifying potential new mTORC1-mediated phosphorylation events, and providing information relevant to the biology of this signaling network, our experimental and analytical approaches indicate the feasibility of large-scale phosphoproteomic profiling of tissue samples to study physiological signaling events in vivo. PMID:21738781

  18. A High Performance Computing Approach to Tree Cover Delineation in 1-m NAIP Imagery using a Probabilistic Learning Framework

    NASA Astrophysics Data System (ADS)

    Basu, S.; Ganguly, S.; Michaelis, A.; Votava, P.; Roy, A.; Mukhopadhyay, S.; Nemani, R. R.

    2015-12-01

    Tree cover delineation is a useful instrument in deriving Above Ground Biomass (AGB) density estimates from Very High Resolution (VHR) airborne imagery data. Numerous algorithms have been designed to address this problem, but most of them do not scale to these datasets which are of the order of terabytes. In this paper, we present a semi-automated probabilistic framework for the segmentation and classification of 1-m National Agriculture Imagery Program (NAIP) for tree-cover delineation for the whole of Continental United States, using a High Performance Computing Architecture. Classification is performed using a multi-layer Feedforward Backpropagation Neural Network and segmentation is performed using a Statistical Region Merging algorithm. The results from the classification and segmentation algorithms are then consolidated into a structured prediction framework using a discriminative undirected probabilistic graphical model based on Conditional Random Field, which helps in capturing the higher order contextual dependencies between neighboring pixels. Once the final probability maps are generated, the framework is updated and re-trained by relabeling misclassified image patches. This leads to a significant improvement in the true positive rates and reduction in false positive rates. The tree cover maps were generated for the whole state of California, spanning a total of 11,095 NAIP tiles covering a total geographical area of 163,696 sq. miles. The framework produced true positive rates of around 88% for fragmented forests and 74% for urban tree cover areas, with false positive rates lower than 2% for both landscapes. Comparative studies with the National Land Cover Data (NLCD) algorithm and the LiDAR canopy height model (CHM) showed the effectiveness of our framework for generating accurate high-resolution tree-cover maps.

  19. RTCB-1 mediates neuroprotection via XBP-1 mRNA splicing in the unfolded protein response pathway.

    PubMed

    Ray, Arpita; Zhang, Siyuan; Rentas, Courtney; Caldwell, Kim A; Caldwell, Guy A

    2014-11-26

    Parkinson's disease (PD), the second most prevalent neurodegenerative disorder, is characterized by the degeneration of dopamine (DA) neurons and age-dependent formation of protein inclusions that contain the α-synuclein (α-syn) protein. RNA interference (RNAi) screening using Caenorhabditis elegans identified RTCB-1, an uncharacterized gene product, as one of several significant modifiers of α-syn protein misfolding. RTCB-1 is the worm ortholog of the human HSPC117 protein, a component of RNA trafficking granules in mammalian neurons. Here we show that RTCB-1 protects C. elegans DA neurons from age-dependent degeneration induced by human α-syn. Moreover, neuronal-specific RNAi depletion of rtcb-1 enhanced α-syn-induced degeneration. Similar results were obtained when worms were exposed to the DA neurotoxin 6-hydroxydopamine. HSPC117 has been characterized recently as an essential subunit of the human tRNA splicing ligase complex. tRNA ligases have alternative functions in RNA repair and nonconventional mRNA splicing events. For example, in yeast, unconventional splicing of HAC1, a transcription factor that controls the unfolded protein response (UPR), is mediated by a tRNA ligase. In C. elegans, we demonstrate that RTCB-1 is necessary for xbp-1 (worm homolog of HAC1) mRNA splicing. Moreover, using a RNA ligase-dead mutant, we determine that the ligase activity of worm RTCB-1 is required for its neuroprotective role, which, in turn, is mediated through XBP-1 in the UPR pathway. Collectively, these studies highlight the mechanistic intersection of RNA processing and proteostasis in mediating neuroprotection. PMID:25429148

  20. Effective conductivity and permittivity of unsaturated porous materials in the frequency range 1 mHz–1GHz

    PubMed Central

    Revil, A

    2013-01-01

    A model combining low-frequency complex conductivity and high-frequency permittivity is developed in the frequency range from 1 mHz to 1 GHz. The low-frequency conductivity depends on pore water and surface conductivities. Surface conductivity is controlled by the electrical diffuse layer, the outer component of the electrical double layer coating the surface of the minerals. The frequency dependence of the effective quadrature conductivity shows three domains. Below a critical frequency fp, which depends on the dynamic pore throat size Λ, the quadrature conductivity is frequency dependent. Between fp and a second critical frequency fd, the quadrature conductivity is generally well described by a plateau when clay minerals are present in the material. Clay-free porous materials with a narrow grain size distribution are described by a Cole-Cole model. The characteristic frequency fd controls the transition between double layer polarization and the effect of the high-frequency permittivity of the material. The Maxwell-Wagner polarization is found to be relatively negligible. For a broad range of frequencies below 1 MHz, the effective permittivity exhibits a strong dependence with the cation exchange capacity and the specific surface area. At high frequency, above the critical frequency fd, the effective permittivity reaches a high-frequency asymptotic limit that is controlled by the two Archie's exponents m and n like the low-frequency electrical conductivity. The unified model is compared with various data sets from the literature and is able to explain fairly well a broad number of observations with a very small number of textural and electrochemical parameters. It could be therefore used to interpret induced polarization, induction-based electromagnetic methods, and ground penetrating radar data to characterize the vadose zone. PMID:23576823