Science.gov

Sample records for 12b distribution code

  1. WASP-12b According to the Bayesian Atmospheric Radiative Transfer (BART) Code

    NASA Astrophysics Data System (ADS)

    Harrington, Joseph; Cubillos, Patricio E.; Blecic, Jasmina; Challener, Ryan C.; Rojo, Patricio M.; Lust, Nate B.; Bowman, M. Oliver; Blumenthal, Sarah D.; Foster, Andrew SD; Foster, A. J.

    2015-11-01

    We present the Bayesian Atmospheric Radiative Transfer (BART) code for atmospheric property retrievals from transit and eclipse spectra, and apply it to WASP-12b, a hot (~3000 K) exoplanet with a high eclipse signal-to-noise ratio. WASP-12b has been controversial. We (Madhusudhan et al. 2011, Nature) claimed it was the first planet with a high C/O abundance ratio. Line et al. (2014, ApJ) suggested a high CO2 abundance to explain the data. Stevenson et al. (2014, ApJ, atmospheric model by Madhusudhan) add additional data and reaffirm the original result, stating that C2H2 and HCN, not included in the Line et al. models, explain the data. We explore several modeling configurations and include Hubble, Spitzer, and ground-based eclipse data.BART consists of a differential-evolution Markov-Chain Monte Carlo sampler that drives a line-by-line radiative transfer code through the phase space of thermal- and abundance-profile parameters. BART is written in Python and C. Python modules generate atmospheric profiles from sets of MCMC parameters and integrate the resulting spectra over observational bandpasses, allowing high flexibility in modeling the planet without interacting with the fast, C portions that calculate the spectra. BART's shared memory and optimized opacity calculation allow it to run on a laptop, enabling classroom use. Runs can scale constant abundance profiles, profiles of thermochemical equilibrium abundances (TEA) calculated by the included TEA code, or arbitrary curves. Several thermal profile parameterizations are available. BART is an open-source, reproducible-research code. Users must release any code or data modifications if they publish results from it, and we encourage the community to use it and to participate in its development via http://github.com/ExOSPORTS/BART.This work was supported by NASA Planetary Atmospheres grant NNX12AI69G and NASA Astrophysics Data Analysis Program grant NNX13AF38G. J. Blecic holds a NASA Earth and Space Science

  2. A Random Walk on WASP-12b with the Bayesian Atmospheric Radiative Transfer (BART) Code

    NASA Astrophysics Data System (ADS)

    Harrington, Joseph; Cubillos, Patricio; Blecic, Jasmina; Challener, Ryan; Rojo, Patricio; Lust, Nathaniel B.; Bowman, Oliver; Blumenthal, Sarah D.; Foster, Andrew S. D.; Foster, Austin James; Stemm, Madison; Bruce, Dylan

    2016-01-01

    We present the Bayesian Atmospheric Radiative Transfer (BART) code for atmospheric property retrievals from transit and eclipse spectra, and apply it to WASP-12b, a hot (~3000 K) exoplanet with a high eclipse signal-to-noise ratio. WASP-12b has been controversial. We (Madhusudhan et al. 2011, Nature) claimed it was the first planet with a high C/O abundance ratio. Line et al. (2014, ApJ) suggested a high CO2 abundance to explain the data. Stevenson et al. (2014, ApJ, atmospheric model by Madhusudhan) add additional data and reaffirm the original result, stating that C2H2 and HCN, not included in the Line et al. models, explain the data. We explore several modeling configurations and include Hubble, Spitzer, and ground-based eclipse data.BART consists of a differential-evolution Markov-Chain Monte Carlo sampler that drives a line-by-line radiative transfer code through the phase space of thermal- and abundance-profile parameters. BART is written in Python and C. Python modules generate atmospheric profiles from sets of MCMC parameters and integrate the resulting spectra over observational bandpasses, allowing high flexibility in modeling the planet without interacting with the fast, C portions that calculate the spectra. BART's shared memory and optimized opacity calculation allow it to run on a laptop, enabling classroom use. Runs can scale constant abundance profiles, profiles of thermochemical equilibrium abundances (TEA) calculated by the included TEA code, or arbitrary curves. Several thermal profile parameterizations are available. BART is an open-source, reproducible-research code. Users must release any code or data modifications if they publish results from it, and we encourage the community to use it and to participate in its development via http://github.com/ExOSPORTS/BART.This work was supported by NASA Planetary Atmospheres grant NNX12AI69G and NASA Astrophysics Data Analysis Program grant NNX13AF38G. J. Blecic holds a NASA Earth and Space Science

  3. The 1990 vertical distribution of two important halons (F-12B1 and F-13B1) in the tropics

    NASA Technical Reports Server (NTRS)

    Singh, O. N.; Borchers, R.; Lal, Shyam; Subbarya, B. H.; Krueger, Bernd C.; Fabian, Peter

    1994-01-01

    The first vertical profiles of F-12B1 and F-13B1 had been obtained in the tropical troposphere and stratosphere by us in 1987. The measurement of these substances responsible for almost the entire anthropogenic contribution to the stratospheric BrO(x) budget is important in the tropics, as tropical upwelling provides their injection along with that of other pollutants, into the stratosphere. To ascertain the trends of these distributions and foster the data, the 1987 experiment was repeated in April 1990. Like 1987, the MPAE cryogenic whole air sampler was launched on a balloon from Hyderabad, India (17.5 deg N), and 14 samples were collected between 10 and 35 km altitude. The results obtained by means of GC and GC-MS analyses showed that the atmospheric abundance of both F-12B1 and F-13B1 is increasing at a fast rate, respectively by about 15 percent and 10 percent per year. From 1987 to 1990, F-12B1 and F-13B1 tropospheric mixing ratios have been growing from 1.2 and 1.3 ppt to 1.8 and 1.7 ppt, respectively. The vertical profiles will be discussed.

  4. UNIX code management and distribution

    SciTech Connect

    Hung, T.; Kunz, P.F.

    1992-09-01

    We describe a code management and distribution system based on tools freely available for the UNIX systems. At the master site, version control is managed with CVS, which is a layer on top of RCS, and distribution is done via NFS mounted file systems. At remote sites, small modifications to CVS provide for interactive transactions with the CVS system at the master site such that remote developers are true peers in the code development process.

  5. A distributed particle simulation code in C++

    SciTech Connect

    Forslund, D.W.; Wingate, C.A.; Ford, P.S.; Junkins, J.S.; Pope, S.C.

    1992-01-01

    Although C++ has been successfully used in a variety of computer science applications, it has just recently begun to be used in scientific applications. We have found that the object-oriented properties of C++ lend themselves well to scientific computations by making maintenance of the code easier, by making the code easier to understand, and by providing a better paradigm for distributed memory parallel codes. We describe here aspects of developing a particle plasma simulation code using object-oriented techniques for use in a distributed computing environment. We initially designed and implemented the code for serial computation and then used the distributed programming toolkit ISIS to run it in parallel. In this connection we describe some of the difficulties presented by using C++ for doing parallel and scientific computation.

  6. Distribution Coding in the Visual Pathway

    PubMed Central

    Sanderson, A. C.; Kozak, W. M.; Calvert, T. W.

    1973-01-01

    Although a variety of types of spike interval histograms have been reported, little attention has been given to the spike interval distribution as a neural code and to how different distributions are transmitted through neural networks. In this paper we present experimental results showing spike interval histograms recorded from retinal ganglion cells of the cat. These results exhibit a clear correlation between spike interval distribution and stimulus condition at the retinal ganglion cell level. The averaged mean rates of the cells studied were nearly the same in light as in darkness whereas the spike interval histograms were much more regular in light than in darkness. We present theoretical models which illustrate how such a distribution coding at the retinal level could be “interpreted” or recorded at some higher level of the nervous system such as the lateral geniculate nucleus. Interpretation is an essential requirement of a neural code which has often been overlooked in modeling studies. Analytical expressions are derived describing the role of distribution coding in determining the transfer characteristics of a simple interaction model and of a lateral inhibition network. Our work suggests that distribution coding might be interpreted by simply interconnected neural networks such as relay cell networks, in general, and the primary thalamic sensory nuclei in particular. PMID:4697235

  7. Distributed transform coding via source-splitting

    NASA Astrophysics Data System (ADS)

    Yahampath, Pradeepa

    2012-12-01

    Transform coding (TC) is one of the best known practical methods for quantizing high-dimensional vectors. In this article, a practical approach to distributed TC of jointly Gaussian vectors is presented. This approach, referred to as source-split distributed transform coding (SP-DTC), can be used to easily implement two terminal transform codes for any given rate-pair. The main idea is to apply source-splitting using orthogonal-transforms, so that only Wyner-Ziv (WZ) quantizers are required for compression of transform coefficients. This approach however requires optimizing the bit allocation among dependent sets of WZ quantizers. In order to solve this problem, a low-complexity tree-search algorithm based on analytical models for transform coefficient quantization is developed. A rate-distortion (RD) analysis of SP-DTCs for jointly Gaussian sources is presented, which indicates that these codes can significantly outperform the practical alternative of independent TC of each source, whenever there is a strong correlation between the sources. For practical implementation of SP-DTCs, the idea of using conditional entropy constrained (CEC) quantizers followed by Slepian-Wolf coding is explored. Experimental results obtained with SP-DTC designs based on both CEC scalar quantizers and CEC trellis-coded quantizers demonstrate that actual implementations of SP-DTCs can achieve RD performance close to the analytically predicted limits.

  8. Time coded distribution via broadcasting stations

    NASA Technical Reports Server (NTRS)

    Leschiutta, S.; Pettiti, V.; Detoma, E.

    1979-01-01

    The distribution of standard time signals via AM and FM broadcasting stations presents the distinct advantages to offer a wide area coverage and to allow the use of inexpensive receivers, but the signals are radiated a limited number of times per day, are not usually available during the night, and no full and automatic synchronization of a remote clock is possible. As an attempt to overcome some of these problems, a time coded signal with a complete date information is diffused by the IEN via the national broadcasting networks in Italy. These signals are radiated by some 120 AM and about 3000 FM and TV transmitters around the country. In such a way, a time ordered system with an accuracy of a couple of milliseconds is easily achieved.

  9. The weight distribution and randomness of linear codes

    NASA Technical Reports Server (NTRS)

    Cheung, K.-M.

    1989-01-01

    Finding the weight distributions of block codes is a problem of theoretical and practical interest. Yet the weight distributions of most block codes are still unknown except for a few classes of block codes. Here, by using the inclusion and exclusion principle, an explicit formula is derived which enumerates the complete weight distribution of an (n,k,d) linear code using a partially known weight distribution. This expression is analogous to the Pless power-moment identities - a system of equations relating the weight distribution of a linear code to the weight distribution of its dual code. Also, an approximate formula for the weight distribution of most linear (n,k,d) codes is derived. It is shown that for a given linear (n,k,d) code over GF(q), the ratio of the number of codewords of weight u to the number of words of weight u approaches the constant Q = q(-)(n-k) as u becomes large. A relationship between the randomness of a linear block code and the minimum distance of its dual code is given, and it is shown that most linear block codes with rigid algebraic and combinatorial structure also display certain random properties which make them similar to random codes with no structure at all.

  10. Adaptive Source Coding Schemes for Geometrically Distributed Integer Alphabets

    NASA Technical Reports Server (NTRS)

    Cheung, K-M.; Smyth, P.

    1993-01-01

    Revisit the Gallager and van Voorhis optimal source coding scheme for geometrically distributed non-negative integer alphabets and show that the various subcodes in the popular Rice algorithm can be derived from the Gallager and van Voorhis code.

  11. Optimal source codes for geometrically distributed integer alphabets

    NASA Technical Reports Server (NTRS)

    Gallager, R. G.; Van Voorhis, D. C.

    1975-01-01

    An approach is shown for using the Huffman algorithm indirectly to prove the optimality of a code for an infinite alphabet if an estimate concerning the nature of the code can be made. Attention is given to nonnegative integers with a geometric probability assignment. The particular distribution considered arises in run-length coding and in encoding protocol information in data networks. Questions of redundancy of the optimal code are also investigated.

  12. Binary weight distributions of some Reed-Solomon codes

    NASA Technical Reports Server (NTRS)

    Pollara, F.; Arnold, S.

    1992-01-01

    The binary weight distributions of the (7,5) and (15,9) Reed-Solomon (RS) codes and their duals are computed using the MacWilliams identities. Several mappings of symbols to bits are considered and those offering the largest binary minimum distance are found. These results are then used to compute bounds on the soft-decoding performance of these codes in the presence of additive Gaussian noise. These bounds are useful for finding large binary block codes with good performance and for verifying the performance obtained by specific soft-coding algorithms presently under development.

  13. Codon Distribution in Error-Detecting Circular Codes

    PubMed Central

    Fimmel, Elena; Strüngmann, Lutz

    2016-01-01

    In 1957, Francis Crick et al. suggested an ingenious explanation for the process of frame maintenance. The idea was based on the notion of comma-free codes. Although Crick’s hypothesis proved to be wrong, in 1996, Arquès and Michel discovered the existence of a weaker version of such codes in eukaryote and prokaryote genomes, namely the so-called circular codes. Since then, circular code theory has invariably evoked great interest and made significant progress. In this article, the codon distributions in maximal comma-free, maximal self-complementary C3 and maximal self-complementary circular codes are discussed, i.e., we investigate in how many of such codes a given codon participates. As the main (and surprising) result, it is shown that the codons can be separated into very few classes (three, or five, or six) with respect to their frequency. Moreover, the distribution classes can be hierarchically ordered as refinements from maximal comma-free codes via maximal self-complementary C3 codes to maximal self-complementary circular codes. PMID:26999215

  14. Censored Distributed Space-Time Coding for Wireless Sensor Networks

    NASA Astrophysics Data System (ADS)

    Yiu, S.; Schober, R.

    2007-12-01

    We consider the application of distributed space-time coding in wireless sensor networks (WSNs). In particular, sensors use a common noncoherent distributed space-time block code (DSTBC) to forward their local decisions to the fusion center (FC) which makes the final decision. We show that the performance of distributed space-time coding is negatively affected by erroneous sensor decisions caused by observation noise. To overcome this problem of error propagation, we introduce censored distributed space-time coding where only reliable decisions are forwarded to the FC. The optimum noncoherent maximum-likelihood and a low-complexity, suboptimum generalized likelihood ratio test (GLRT) FC decision rules are derived and the performance of the GLRT decision rule is analyzed. Based on this performance analysis we derive a gradient algorithm for optimization of the local decision/censoring threshold. Numerical and simulation results show the effectiveness of the proposed censoring scheme making distributed space-time coding a prime candidate for signaling in WSNs.

  15. Error resiliency of distributed video coding in wireless video communication

    NASA Astrophysics Data System (ADS)

    Ye, Shuiming; Ouaret, Mourad; Dufaux, Frederic; Ansorge, Michael; Ebrahimi, Touradj

    2008-08-01

    Distributed Video Coding (DVC) is a new paradigm in video coding, based on the Slepian-Wolf and Wyner-Ziv theorems. DVC offers a number of potential advantages: flexible partitioning of the complexity between the encoder and decoder, robustness to channel errors due to intrinsic joint source-channel coding, codec independent scalability, and multi-view coding without communications between the cameras. In this paper, we evaluate the performance of DVC in an error-prone wireless communication environment. We also present a hybrid spatial and temporal error concealment approach for DVC. Finally, we perform a comparison with a state-of-the-art AVC/H.264 video coding scheme in the presence of transmission errors.

  16. Distributed Turbo Product Codes with Multiple Vertical Parities

    NASA Astrophysics Data System (ADS)

    Obiedat, Esam A.; Chen, Guotai; Cao, Lei

    2009-12-01

    We propose a Multiple Vertical Parities Distributed Turbo Product Code (MVP-DTPC) over cooperative network using block Bose Chaudhuri Hochquenghem (BCH) codes as component codes. The source broadcasts extended BCH coded frames to the destination and nearby relays. After decoding the received sequences, each relay constructs a product code by arranging the corrected bit sequences in rows and re-encoding them vertically using BCH as component codes to obtain an Incremental Redundancy (IR) for source's data. To obtain independent vertical parities from each relay in the same code space, we propose a new Circular Interleaver for source's data; different circular interleavers are used to interleave BCH rows before re-encoding vertically. The Maximum A posteriori Probability (MAP) decoding is achieved by applying maximum transfer of extrinsic information between the multiple decoding stages. This is employed in the modified turbo product decoder, which is proposed to cope with multiple parities. The a posteriori output from a vertical decoding stage is used to derive the soft extrinsic information, that are used as a priori input for the next horizontal decoding stage. Simulation results in Additive White Gaussian Noise (AWGN) channel using network scenarios show 0.3-0.5 dB gain improvement in Bit Error Rate (BER) performance over the non-cooperative Turbo Product Codes (TPC).

  17. Distributed Inference in Tree Networks Using Coding Theory

    NASA Astrophysics Data System (ADS)

    Kailkhura, Bhavya; Vempaty, Aditya; Varshney, Pramod K.

    2015-07-01

    In this paper, we consider the problem of distributed inference in tree based networks. In the framework considered in this paper, distributed nodes make a 1-bit local decision regarding a phenomenon before sending it to the fusion center (FC) via intermediate nodes. We propose the use of coding theory based techniques to solve this distributed inference problem in such structures. Data is progressively compressed as it moves towards the FC. The FC makes the global inference after receiving data from intermediate nodes. Data fusion at nodes as well as at the FC is implemented via error correcting codes. In this context, we analyze the performance for a given code matrix and also design the optimal code matrices at every level of the tree. We address the problems of distributed classification and distributed estimation separately and develop schemes to perform these tasks in tree networks. The proposed schemes are of practical significance due to their simple structure. We study the asymptotic inference performance of our schemes for two different classes of tree networks: fixed height tree networks, and fixed degree tree networks. We show that the proposed schemes are asymptotically optimal under certain conditions.

  18. Code CUGEL: A code to unfold Ge(Li) spectrometer polyenergetic gamma photon experimental distributions

    NASA Technical Reports Server (NTRS)

    Steyn, J. J.; Born, U.

    1970-01-01

    A FORTRAN code was developed for the Univac 1108 digital computer to unfold lithium-drifted germanium semiconductor spectrometers, polyenergetic gamma photon experimental distributions. It was designed to analyze the combination continuous and monoenergetic gamma radiation field of radioisotope volumetric sources. The code generates the detector system response matrix function and applies it to monoenergetic spectral components discretely and to the continuum iteratively. It corrects for system drift, source decay, background, and detection efficiency. Results are presented in digital form for differential and integrated photon number and energy distributions, and for exposure dose.

  19. Streamlined Genome Sequence Compression using Distributed Source Coding

    PubMed Central

    Wang, Shuang; Jiang, Xiaoqian; Chen, Feng; Cui, Lijuan; Cheng, Samuel

    2014-01-01

    We aim at developing a streamlined genome sequence compression algorithm to support alternative miniaturized sequencing devices, which have limited communication, storage, and computation power. Existing techniques that require heavy client (encoder side) cannot be applied. To tackle this challenge, we carefully examined distributed source coding theory and developed a customized reference-based genome compression protocol to meet the low-complexity need at the client side. Based on the variation between source and reference, our protocol will pick adaptively either syndrome coding or hash coding to compress subsequences of changing code length. Our experimental results showed promising performance of the proposed method when compared with the state-of-the-art algorithm (GRS). PMID:25520552

  20. Distributed wavefront coding for wide angle imaging system

    NASA Astrophysics Data System (ADS)

    Larivière-Bastien, Martin; Zhang, Hu; Thibault, Simon

    2011-10-01

    The emerging paradigm of imaging systems, known as wavefront coding, which employs joint optimization of both the optical system and the digital post-processing system, has not only increased the degrees of design freedom but also brought several significant system-level benefits. The effectiveness of wavefront coding has been demonstrated by several proof-of-concept systems in the reduction of focus-related aberrations and extension of depth of focus. While previous research on wavefront coding was mainly targeted at imaging systems having a small or modest field of view (FOV), we present a preliminary study on wavefront coding applied to panoramic optical systems. Unlike traditional wavefront coding systems, which only require the constancy of the modulation transfer function (MTF) over an extended focus range, wavefront-coded panoramic systems particularly emphasize the mitigation of significant off-axis aberrations such as field curvature, coma, and astigmatism. The restrictions of using a traditional generalized cubic polynomial pupil phase mask for wide angle systems are studied in this paper. It is shown that a traditional approach can be used when the variation of the off-axis aberrations remains modest. Consequently, we propose to study how a distributed wavefront coding approach, where two surfaces are used for encoding the wavefront, can be applied to wide angle lenses. A few cases designed using Zemax are presented and discussed

  1. Distributed magnetic field positioning system using code division multiple access

    NASA Technical Reports Server (NTRS)

    Prigge, Eric A. (Inventor)

    2003-01-01

    An apparatus and methods for a magnetic field positioning system use a fundamentally different, and advantageous, signal structure and multiple access method, known as Code Division Multiple Access (CDMA). This signal architecture, when combined with processing methods, leads to advantages over the existing technologies, especially when applied to a system with a large number of magnetic field generators (beacons). Beacons at known positions generate coded magnetic fields, and a magnetic sensor measures a sum field and decomposes it into component fields to determine the sensor position and orientation. The apparatus and methods can have a large `building-sized` coverage area. The system allows for numerous beacons to be distributed throughout an area at a number of different locations. A method to estimate position and attitude, with no prior knowledge, uses dipole fields produced by these beacons in different locations.

  2. Energy efficient wireless sensor networks using asymmetric distributed source coding

    NASA Astrophysics Data System (ADS)

    Rao, Abhishek; Kulkarni, Murlidhar

    2013-01-01

    Wireless Sensor Networks (WSNs) are networks of sensor nodes deployed over a geographical area to perform a specific task. WSNs pose many design challenges. Energy conservation is one such design issue. In literature a wide range of solutions addressing this issue have been proposed. Generally WSNs are densely deployed. Thus the nodes with the close proximity are more likely to have the same data. Transmission of such non-aggregated data may lead to an inefficient energy management. Hence the data fusion has to be performed at the nodes so as to combine the edundant information into a single data unit. Distributed Source Coding is an efficient approach in achieving this task. In this paper an attempt has been made in modeling such a system. Various energy efficient codes were considered for the analysis. System performance in terms of energy efficiency has been made.

  3. Parallelization of Finite Element Analysis Codes Using Heterogeneous Distributed Computing

    NASA Technical Reports Server (NTRS)

    Ozguner, Fusun

    1996-01-01

    Performance gains in computer design are quickly consumed as users seek to analyze larger problems to a higher degree of accuracy. Innovative computational methods, such as parallel and distributed computing, seek to multiply the power of existing hardware technology to satisfy the computational demands of large applications. In the early stages of this project, experiments were performed using two large, coarse-grained applications, CSTEM and METCAN. These applications were parallelized on an Intel iPSC/860 hypercube. It was found that the overall speedup was very low, due to large, inherently sequential code segments present in the applications. The overall execution time T(sub par), of the application is dependent on these sequential segments. If these segments make up a significant fraction of the overall code, the application will have a poor speedup measure.

  4. Selective video encryption of a distributed coded bitstream using LDPC codes

    NASA Astrophysics Data System (ADS)

    Um, Hwayoung; Delp, Edward J.

    2006-02-01

    Selective encryption is a technique that is used to minimizec omputational complexity or enable system functionality by only encrypting a portion of a compressed bitstream while still achieving reasonable security. For selective encryption to work, we need to rely not only on the beneficial effects of redundancy reduction, but also on the characteristics of the compression algorithm to concentrate important data representing the source in a relatively small fraction of the compressed bitstream. These important elements of the compressed data become candidates for selective encryption. In this paper, we combine encryption and distributed video source coding to consider the choices of which types of bits are most effective for selective encryption of a video sequence that has been compressed using a distributed source coding method based on LDPC codes. Instead of encrypting the entire video stream bit by bit, we encrypt only the highly sensitive bits. By combining the compression and encryption tasks and thus reducing the number of bits encrypted, we can achieve a reduction in system complexity.

  5. Weight distributions for turbo codes using random and nonrandom permutations

    NASA Technical Reports Server (NTRS)

    Dolinar, S.; Divsalar, D.

    1995-01-01

    This article takes a preliminary look at the weight distributions achievable for turbo codes using random, nonrandom, and semirandom permutations. Due to the recursiveness of the encoders, it is important to distinguish between self-terminating and non-self-terminating input sequences. The non-self-terminating sequences have little effect on decoder performance, because they accumulate high encoded weight until they are artificially terminated at the end of the block. From probabilistic arguments based on selecting the permutations randomly, it is concluded that the self-terminating weight-2 data sequences are the most important consideration in the design of constituent codes; higher-weight self-terminating sequences have successively decreasing importance. Also, increasing the number of codes and, correspondingly, the number of permutations makes it more and more likely that the bad input sequences will be broken up by one or more of the permuters. It is possible to design nonrandom permutations that ensure that the minimum distance due to weight-2 input sequences grows roughly as the square root of (2N), where N is the block length. However, these nonrandom permutations amplify the bad effects of higher-weight inputs, and as a result they are inferior in performance to randomly selected permutations. But there are 'semirandom' permutations that perform nearly as well as the designed nonrandom permutations with respect to weight-2 input sequences and are not as susceptible to being foiled by higher-weight inputs.

  6. Distributed Coding/Decoding Complexity in Video Sensor Networks

    PubMed Central

    Cordeiro, Paulo J.; Assunção, Pedro

    2012-01-01

    Video Sensor Networks (VSNs) are recent communication infrastructures used to capture and transmit dense visual information from an application context. In such large scale environments which include video coding, transmission and display/storage, there are several open problems to overcome in practical implementations. This paper addresses the most relevant challenges posed by VSNs, namely stringent bandwidth usage and processing time/power constraints. In particular, the paper proposes a novel VSN architecture where large sets of visual sensors with embedded processors are used for compression and transmission of coded streams to gateways, which in turn transrate the incoming streams and adapt them to the variable complexity requirements of both the sensor encoders and end-user decoder terminals. Such gateways provide real-time transcoding functionalities for bandwidth adaptation and coding/decoding complexity distribution by transferring the most complex video encoding/decoding tasks to the transcoding gateway at the expense of a limited increase in bit rate. Then, a method to reduce the decoding complexity, suitable for system-on-chip implementation, is proposed to operate at the transcoding gateway whenever decoders with constrained resources are targeted. The results show that the proposed method achieves good performance and its inclusion into the VSN infrastructure provides an additional level of complexity control functionality. PMID:22736972

  7. Practical distributed video coding in packet lossy channels

    NASA Astrophysics Data System (ADS)

    Qing, Linbo; Masala, Enrico; He, Xiaohai

    2013-07-01

    Improving error resilience of video communications over packet lossy channels is an important and tough task. We present a framework to optimize the quality of video communications based on distributed video coding (DVC) in practical packet lossy network scenarios. The peculiar characteristics of DVC indeed require a number of adaptations to take full advantage of its intrinsic robustness when dealing with data losses of typical real packet networks. This work proposes a new packetization scheme, an investigation of the best error-correcting codes to use in a noisy environment, a practical rate-allocation mechanism, which minimizes decoder feedback, and an improved side-information generation and reconstruction function. Performance comparisons are presented with respect to a conventional packet video communication using H.264/advanced video coding (AVC). Although currently the H.264/AVC rate-distortion performance in case of no loss is better than state-of-the-art DVC schemes, under practical packet lossy conditions, the proposed techniques provide better performance with respect to an H.264/AVC-based system, especially at high packet loss rates. Thus the error resilience of the proposed DVC scheme is superior to the one provided by H.264/AVC, especially in the case of transmission over packet lossy networks.

  8. Sparsey™: event recognition via deep hierarchical sparse distributed codes

    PubMed Central

    Rinkus, Gerard J.

    2014-01-01

    The visual cortex's hierarchical, multi-level organization is captured in many biologically inspired computational vision models, the general idea being that progressively larger scale (spatially/temporally) and more complex visual features are represented in progressively higher areas. However, most earlier models use localist representations (codes) in each representational field (which we equate with the cortical macrocolumn, “mac”), at each level. In localism, each represented feature/concept/event (hereinafter “item”) is coded by a single unit. The model we describe, Sparsey, is hierarchical as well but crucially, it uses sparse distributed coding (SDC) in every mac in all levels. In SDC, each represented item is coded by a small subset of the mac's units. The SDCs of different items can overlap and the size of overlap between items can be used to represent their similarity. The difference between localism and SDC is crucial because SDC allows the two essential operations of associative memory, storing a new item and retrieving the best-matching stored item, to be done in fixed time for the life of the model. Since the model's core algorithm, which does both storage and retrieval (inference), makes a single pass over all macs on each time step, the overall model's storage/retrieval operation is also fixed-time, a criterion we consider essential for scalability to the huge (“Big Data”) problems. A 2010 paper described a nonhierarchical version of this model in the context of purely spatial pattern processing. Here, we elaborate a fully hierarchical model (arbitrary numbers of levels and macs per level), describing novel model principles like progressive critical periods, dynamic modulation of principal cells' activation functions based on a mac-level familiarity measure, representation of multiple simultaneously active hypotheses, a novel method of time warp invariant recognition, and we report results showing learning/recognition of spatiotemporal

  9. Robust video transmission with distributed source coded auxiliary channel.

    PubMed

    Wang, Jiajun; Majumdar, Abhik; Ramchandran, Kannan

    2009-12-01

    We propose a novel solution to the problem of robust, low-latency video transmission over lossy channels. Predictive video codecs, such as MPEG and H.26x, are very susceptible to prediction mismatch between encoder and decoder or "drift" when there are packet losses. These mismatches lead to a significant degradation in the decoded quality. To address this problem, we propose an auxiliary codec system that sends additional information alongside an MPEG or H.26x compressed video stream to correct for errors in decoded frames and mitigate drift. The proposed system is based on the principles of distributed source coding and uses the (possibly erroneous) MPEG/H.26x decoder reconstruction as side information at the auxiliary decoder. The distributed source coding framework depends upon knowing the statistical dependency (or correlation) between the source and the side information. We propose a recursive algorithm to analytically track the correlation between the original source frame and the erroneous MPEG/H.26x decoded frame. Finally, we propose a rate-distortion optimization scheme to allocate the rate used by the auxiliary encoder among the encoding blocks within a video frame. We implement the proposed system and present extensive simulation results that demonstrate significant gains in performance both visually and objectively (on the order of 2 dB in PSNR over forward error correction based solutions and 1.5 dB in PSNR over intrarefresh based solutions for typical scenarios) under tight latency constraints. PMID:19703801

  10. Behavioral correlates of the distributed coding of spatial context.

    PubMed

    Anderson, Michael I; Killing, Sarah; Morris, Caitlin; O'Donoghue, Alan; Onyiagha, Dikennam; Stevenson, Rosemary; Verriotis, Madeleine; Jeffery, Kathryn J

    2006-01-01

    Hippocampal place cells respond heterogeneously to elemental changes of a compound spatial context, suggesting that they form a distributed code of context, whereby context information is shared across a population of neurons. The question arises as to what this distributed code might be useful for. The present study explored two possibilities: one, that it allows contexts with common elements to be disambiguated, and the other, that it allows a given context to be associated with more than one outcome. We used two naturalistic measures of context processing in rats, rearing and thigmotaxis (boundary-hugging), to explore how rats responded to contextual novelty and to relate this to the behavior of place cells. In experiment 1, rats showed dishabituation of rearing to a novel reconfiguration of familiar context elements, suggesting that they perceived the reconfiguration as novel, a behavior that parallels that of place cells in a similar situation. In experiment 2, rats were trained in a place preference task on an open-field arena. A change in the arena context triggered renewed thigmotaxis, and yet navigation continued unimpaired, indicating simultaneous representation of both the altered contextual and constant spatial cues. Place cells similarly exhibited a dual population of responses, consistent with the hypothesis that their activity underlies spatial behavior. Together, these experiments suggest that heterogeneous context encoding (or "partial remapping") by place cells may function to allow the flexible assignment of associations to contexts, a faculty that could be useful in episodic memory encoding. PMID:16921500

  11. Pressure distribution based optimization of phase-coded acoustical vortices

    SciTech Connect

    Zheng, Haixiang; Gao, Lu; Dai, Yafei; Ma, Qingyu; Zhang, Dong

    2014-02-28

    Based on the acoustic radiation of point source, the physical mechanism of phase-coded acoustical vortices is investigated with formulae derivations of acoustic pressure and vibration velocity. Various factors that affect the optimization of acoustical vortices are analyzed. Numerical simulations of the axial, radial, and circular pressure distributions are performed with different source numbers, frequencies, and axial distances. The results prove that the acoustic pressure of acoustical vortices is linearly proportional to the source number, and lower fluctuations of circular pressure distributions can be produced for more sources. With the increase of source frequency, the acoustic pressure of acoustical vortices increases accordingly with decreased vortex radius. Meanwhile, increased vortex radius with reduced acoustic pressure is also achieved for longer axial distance. With the 6-source experimental system, circular and radial pressure distributions at various frequencies and axial distances have been measured, which have good agreements with the results of numerical simulations. The favorable results of acoustic pressure distributions provide theoretical basis for further studies of acoustical vortices.

  12. Dynamic algorithm for correlation noise estimation in distributed video coding

    NASA Astrophysics Data System (ADS)

    Thambu, Kuganeswaran; Fernando, Xavier; Guan, Ling

    2010-01-01

    Low complexity encoders at the expense of high complexity decoders are advantageous in wireless video sensor networks. Distributed video coding (DVC) achieves the above complexity balance, where the receivers compute Side information (SI) by interpolating the key frames. Side information is modeled as a noisy version of input video frame. In practise, correlation noise estimation at the receiver is a complex problem, and currently the noise is estimated based on a residual variance between pixels of the key frames. Then the estimated (fixed) variance is used to calculate the bit-metric values. In this paper, we have introduced the new variance estimation technique that rely on the bit pattern of each pixel, and it is dynamically calculated over the entire motion environment which helps to calculate the soft-value information required by the decoder. Our result shows that the proposed bit based dynamic variance estimation significantly improves the peak signal to noise ratio (PSNR) performance.

  13. Thermal Phase Variations of WASP-12b

    NASA Astrophysics Data System (ADS)

    Cowan, Nicolas B.; Machalek, P.; Croll, B.; Deming, D.; Burrows, A.; Hora, J.; Greene, T.

    2011-09-01

    The short-period planet WASP-12b is among the hottest known transiting planets. Space- and ground-based secondary eclipse depths imply that this planet has a C/O ratio greater than 1 (Madhusudhan et al. 2011), in stark contrast to the chemistry in the Solar System and the assumed chemistry of other planets. These same eclipse data put the planet's day-side effective temperature at 3000 K. This indicates a low albedo and poor recirculation of heat to the night-side, as has been found for all of the hottest transiting giant planets (Cowan & Agol 2011b). But these trends were based solely on day-side observations (eclipse depths) rather than full phase variations, which directly probe night-side temperature. The short period (1.1 day) and inflated radius (1.8 RJ) of WASP-12b has led to speculation that it may be undergoing Roche-lobe overflow (Li et al. 2010, Lai et al. 2010), and UV observations by Fossati et al. (2010) seem to support this idea. We have recently obtained thermal phase curves of this planet with Warm Spitzer (PI:Machalek; PID 70060). Our data include two eclipses, a transit, and full phase coverage at each of 3.6 and 4.5 micron. Because of the planet's high temperature and large size, this is one of the highest S/N phase curves yet obtained with Spitzer. These data (currently being analyzed) will allow us to directly measure the planet's night-side temperature and the longitudinal offset of its day-side hot-spot. Since the 3.6 and 4.5 micron bands probe different depths in the atmosphere, we will strongly constrain climate models for the hottest gas giants. The high precision transit and eclipse photometry offered by Spitzer will also allow us to search for signs of accretion in this system.

  14. Thermal Phase Variations of WASP-12b

    NASA Astrophysics Data System (ADS)

    Cowan, N. B.; Machalek, P.; Croll, B.; Deming, D.; Burrows, A.; Hora, J.; Greene, T.

    2011-10-01

    The short-period planet WASP-12b is among the hottest known transiting planets. Space- and groundbased secondary eclipse depths imply that this planet has a C/O ratio greater than 1 (Madhusudhan et al. 2011), in stark contrast to the chemistry in the Solar System and the assumed chemistry of other planets. These same eclipse data put the planet's day-side effective temperature at ˜3000 K. This indicates a low albedo and poor recirculation of heat to the night-side, as has been found for all of the hottest transiting giant planets (Cowan & Agol 2011b). But these trends were based solely on day-side observations (eclipse depths) rather than full phase variations, which directly probe night-side temperature. The short period (1.1 day) and inflated radius (1.8 RJ ) ofWASP-12b has led to speculation that it may be undergoing Roche-lobe overflow (Li et al. 2010, Lai et al. 2010), and UV observations by Fossati et al. (2010) seem to support this idea. We have recently obtained thermal phase curves of this planet with Warm Spitzer (PI: Machalek; PID 70060). Our data include two eclipses, a transit, and full phase coverage at each of 3.6 and 4.5 micron. Because of the planet's high temperature and large size, this is one of the highest S/N phase curves yet obtained with Spitzer. These data (currently being analyzed) will allow us to directly measure the planet's night-side temperature and the longitudinal offset of its day-side hotspot. Since the 3.6 and 4.5 micron bands probe different depths in the atmosphere, we will strongly constrain climate models for the hottest gas giants. The high precision transit and eclipse photometry offered by Spitzer will also allow us to search for signs of accretion in this system.

  15. Non-coding RNAs and complex distributed genetic networks

    NASA Astrophysics Data System (ADS)

    Zhdanov, Vladimir P.

    2011-08-01

    In eukaryotic cells, the mRNA-protein interplay can be dramatically influenced by non-coding RNAs (ncRNAs). Although this new paradigm is now widely accepted, an understanding of the effect of ncRNAs on complex genetic networks is lacking. To clarify what may happen in this case, we propose a mean-field kinetic model describing the influence of ncRNA on a complex genetic network with a distributed architecture including mutual protein-mediated regulation of many genes transcribed into mRNAs. ncRNA is considered to associate with mRNAs and inhibit their translation and/or facilitate degradation. Our results are indicative of the richness of the kinetics under consideration. The main complex features are found to be bistability and oscillations. One could expect to find kinetic chaos as well. The latter feature has however not been observed in our calculations. In addition, we illustrate the difference in the regulation of distributed networks by mRNA and ncRNA.

  16. Adaptive distributed video coding with correlation estimation using expectation propagation

    NASA Astrophysics Data System (ADS)

    Cui, Lijuan; Wang, Shuang; Jiang, Xiaoqian; Cheng, Samuel

    2012-10-01

    Distributed video coding (DVC) is rapidly increasing in popularity by the way of shifting the complexity from encoder to decoder, whereas no compression performance degrades, at least in theory. In contrast with conventional video codecs, the inter-frame correlation in DVC is explored at decoder based on the received syndromes of Wyner-Ziv (WZ) frame and side information (SI) frame generated from other frames available only at decoder. However, the ultimate decoding performances of DVC are based on the assumption that the perfect knowledge of correlation statistic between WZ and SI frames should be available at decoder. Therefore, the ability of obtaining a good statistical correlation estimate is becoming increasingly important in practical DVC implementations. Generally, the existing correlation estimation methods in DVC can be classified into two main types: pre-estimation where estimation starts before decoding and on-the-fly (OTF) estimation where estimation can be refined iteratively during decoding. As potential changes between frames might be unpredictable or dynamical, OTF estimation methods usually outperforms pre-estimation techniques with the cost of increased decoding complexity (e.g., sampling methods). In this paper, we propose a low complexity adaptive DVC scheme using expectation propagation (EP), where correlation estimation is performed OTF as it is carried out jointly with decoding of the factor graph-based DVC code. Among different approximate inference methods, EP generally offers better tradeoff between accuracy and complexity. Experimental results show that our proposed scheme outperforms the benchmark state-of-the-art DISCOVER codec and other cases without correlation tracking, and achieves comparable decoding performance but with significantly low complexity comparing with sampling method.

  17. 33 CFR 157.12b - Implementation requirements.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 2 2010-07-01 2010-07-01 false Implementation requirements. 157.12b Section 157.12b Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY... OIL IN BULK Design, Equipment, and Installation § 157.12b Implementation requirements. Oil...

  18. 19 CFR 11.12b - Labeling textile fiber products.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 19 Customs Duties 1 2013-04-01 2013-04-01 false Labeling textile fiber products. 11.12b Section 11.12b Customs Duties U.S. CUSTOMS AND BORDER PROTECTION, DEPARTMENT OF HOMELAND SECURITY; DEPARTMENT OF THE TREASURY PACKING AND STAMPING; MARKING Marking § 11.12b Labeling textile fiber products. (a) Textile fiber products imported into the...

  19. FPGA based digital phase-coding quantum key distribution system

    NASA Astrophysics Data System (ADS)

    Lu, XiaoMing; Zhang, LiJun; Wang, YongGang; Chen, Wei; Huang, DaJun; Li, Deng; Wang, Shuang; He, DeYong; Yin, ZhenQiang; Zhou, Yu; Hui, Cong; Han, ZhengFu

    2015-12-01

    Quantum key distribution (QKD) is a technology with the potential capability to achieve information-theoretic security. Phasecoding is an important approach to develop practical QKD systems in fiber channel. In order to improve the phase-coding modulation rate, we proposed a new digital-modulation method in this paper and constructed a compact and robust prototype of QKD system using currently available components in our lab to demonstrate the effectiveness of the method. The system was deployed in laboratory environment over a 50 km fiber and continuously operated during 87 h without manual interaction. The quantum bit error rate (QBER) of the system was stable with an average value of 3.22% and the secure key generation rate is 8.91 kbps. Although the modulation rate of the photon in the demo system was only 200 MHz, which was limited by the Faraday-Michelson interferometer (FMI) structure, the proposed method and the field programmable gate array (FPGA) based electronics scheme have a great potential for high speed QKD systems with Giga-bits/second modulation rate.

  20. Statistical analysis of the distribution of amino acids in Borrelia burgdorferi genome under different genetic codes

    NASA Astrophysics Data System (ADS)

    García, José A.; Alvarez, Samantha; Flores, Alejandro; Govezensky, Tzipe; Bobadilla, Juan R.; José, Marco V.

    2004-10-01

    The genetic code is considered to be universal. In order to test if some statistical properties of the coding bacterial genome were due to inherent properties of the genetic code, we compared the autocorrelation function, the scaling properties and the maximum entropy of the distribution of distances of amino acids in sequences obtained by translating protein-coding regions from the genome of Borrelia burgdorferi, under different genetic codes. Overall our results indicate that these properties are very stable to perturbations made by altering the genetic code. We also discuss the evolutionary likely implications of the present results.

  1. On the binary weight distribution of some Reed-Solomon codes

    NASA Technical Reports Server (NTRS)

    Lin, S.

    1985-01-01

    Consider an (n,k) linear code with symbols from GF(2 sup M). If each code symbol is represented by a m-tuple over GF(2) using certain basis for GF(2 sup M), a binary (nm,km) linear code is obtained. The weight distribution of a binary linear code obtained in this manner is investigated. Weight enumerators for binary linear codes obtained from Reed-Solomon codes over GF(2 sup M) generated by polynomials, (X-alpha), (X-l)(X-alpha), (X-alpha)(X-alpha squared) and (X-l)(X-alpha)(X-alpha squared) and their extended codes are presented, where alpha is a primitive element of GF(2 sup M). Binary codes derived from Reed-Solomon codes are often used for correcting multiple bursts of errors.

  2. Distributed Estimation, Coding, and Scheduling in Wireless Visual Sensor Networks

    ERIC Educational Resources Information Center

    Yu, Chao

    2013-01-01

    In this thesis, we consider estimation, coding, and sensor scheduling for energy efficient operation of wireless visual sensor networks (VSN), which consist of battery-powered wireless sensors with sensing (imaging), computation, and communication capabilities. The competing requirements for applications of these wireless sensor networks (WSN)…

  3. SAMDIST: A Computer Code for Calculating Statistical Distributions for R-Matrix Resonance Parameters

    SciTech Connect

    Leal, L.C.

    1995-01-01

    The: SAMDIST computer code has been developed to calculate distribution of resonance parameters of the Reich-Moore R-matrix type. The program assumes the parameters are in the format compatible with that of the multilevel R-matrix code SAMMY. SAMDIST calculates the energy-level spacing distribution, the resonance width distribution, and the long-range correlation of the energy levels. Results of these calculations are presented in both graphic and tabular forms.

  4. SAMDIST: A computer code for calculating statistical distributions for R-matrix resonance parameters

    SciTech Connect

    Leal, L.C.; Larson, N.M.

    1995-09-01

    The SAMDIST computer code has been developed to calculate distribution of resonance parameters of the Reich-Moore R-matrix type. The program assumes the parameters are in the format compatible with that of the multilevel R-matrix code SAMMY. SAMDIST calculates the energy-level spacing distribution, the resonance width distribution, and the long-range correlation of the energy levels. Results of these calculations are presented in both graphic and tabular forms.

  5. A New Solution of Distributed Disaster Recovery Based on Raptor Code

    NASA Astrophysics Data System (ADS)

    Deng, Kai; Wang, Kaiyun; Ma, Danyang

    For the large cost, low data availability in the condition of multi-node storage and poor capacity of intrusion tolerance of traditional disaster recovery which is based on simple copy, this paper put forward a distributed disaster recovery scheme based on raptor codes. This article introduces the principle of raptor codes, and analyses its coding advantages, and gives a comparative analysis between this solution and traditional solutions through the aspects of redundancy, data availability and capacity of intrusion tolerance. The results show that the distributed disaster recovery solution based on raptor codes can achieve higher data availability as well as better intrusion tolerance capabilities in the premise of lower redundancy.

  6. Joint Channel-Network Coding (JCNC) for Distributed Storage in Wireless Network

    NASA Astrophysics Data System (ADS)

    Wang, Ning; Lin, Jiaru

    We propose to construct a joint channel-network coding (knosswn as Random Linear Coding) scheme based on improved turbo codes for the distributed storage in wireless communication network with k data nodes, s storage nodes (kdistributed storage with erasure channel to AWGN and fading channel scenario. We investigate the throughput performance of the Joint Channel-Network Coding (JCNC) system benefits from network coding, compared with that of system without network coding based only on store and forward (S-F) approach. Another helpful parameter: node degree (L) indicates how many storage nodes one data packet should fall onto. L characterizes the en/decoding complexity of the system. Moreover, this proposed framework can be extended to ad-hoc and sensor network easily.

  7. A magnetization study of RCo 12B 6 intermetallics

    NASA Astrophysics Data System (ADS)

    Mittag, M.; Rosenberg, M.; Buschow, K. H. J.

    1989-11-01

    The magnetic properties of polycrystalline intermetallics RCo 12B 6 with R = Y, La, Ce, Pr, Nd, Sm, Gd, Tb, Dy, Ho, Er and Tm have been studied in the temperature range 3-300 K and in fields up to 2 T. All compounds order magnetically between Tc=134.3 K for CeCo 12B 6 and Tc=162 K for GdCo 12B 6. YCo 12B 6 has an average Co moment of 0.42μ B. Since the Co moment is constant for all samples the R moments can be easily obtained and they are in good agreement with free R 3+ ion values. Ce is quadripositive in CeCo 12B 6 and therefore nonmagnetic. All light rare-earth compounds are ferromagnetic, while all heavy rare-earth compounds are ferrimagnetic with compensation points between Tcomp=11.6 K ( TmCo12B6) and Tcomp=82.8 K ( TbCo12B6). In the paramagnetic state an effective magnetic moment of 1.94μ B per Co atom has been found. The mean-field approximation yields a 3d-3d exchange integral of {J CoCo}/{k B}=110 K . The 3d-4f exchange integral is much smaller and equal to about {J RCo}/{k B}=6 K .

  8. Utilities for master source code distribution: MAX and Friends

    NASA Technical Reports Server (NTRS)

    Felippa, Carlos A.

    1988-01-01

    MAX is a program for the manipulation of FORTRAN master source code (MSC). This is a technique by which one maintains one and only one master copy of a FORTRAN program under a program developing system, which for MAX is assumed to be VAX/VMS. The master copy is not intended to be directly compiled. Instead it must be pre-processed by MAX to produce compilable instances. These instances may correspond to different code versions (for example, double precision versus single precision), different machines (for example, IBM, CDC, Cray) or different operating systems (i.e., VAX/VMS versus VAX/UNIX). The advantage os using a master source is more pronounced in complex application programs that are developed and maintained over many years and are to be transported and executed on several computer environments. The version lag problem that plagues many such programs is avoided by this approach. MAX is complemented by several auxiliary programs that perform nonessential functions. The ensemble is collectively known as MAX and Friends. All of these programs, including MAX, are executed as foreign VAX/VMS commands and can easily be hidden in customized VMS command procedures.

  9. Source coding with escort distributions and Rényi entropy bounds

    NASA Astrophysics Data System (ADS)

    Bercher, J.-F.

    2009-08-01

    We discuss the interest of escort distributions and Rényi entropy in the context of source coding. We first recall a source coding theorem by Campbell relating a generalized measure of length to the Rényi-Tsallis entropy. We show that the associated optimal codes can be obtained using considerations on escort-distributions. We propose a new family of measure of length involving escort-distributions and we show that these generalized lengths are also bounded below by the Rényi entropy. Furthermore, we obtain that the standard Shannon codes lengths are optimum for the new generalized lengths measures, whatever the entropic index. Finally, we show that there exists in this setting an interplay between standard and escort distributions.

  10. Quantum circuit for optimal eavesdropping in quantum key distribution using phase-time coding

    SciTech Connect

    Kronberg, D. A.; Molotkov, S. N.

    2010-07-15

    A quantum circuit is constructed for optimal eavesdropping on quantum key distribution proto- cols using phase-time coding, and its physical implementation based on linear and nonlinear fiber-optic components is proposed.

  11. TEMPEST code simulations of hydrogen distribution in reactor containment structures. Final report

    SciTech Connect

    Trent, D.S.; Eyler, L.L.

    1985-03-01

    The mass transport version of the TEMPEST computer code was used to simulate hydrogen distribution in geometric configurations relevant to reactor containment structures. Predicted results of Battelle-Frankfurt hydrogen distribution tests 1 to 6, and 12 are presented. Agreement between predictions and experimental data is good. Best agreement is obtained using the k-epsilon turbulence model in TEMPEST in flow cases where turbulent diffusion and stable stratification are dominant mechanisms affecting transport. The code's general analysis capabilities are summarized.

  12. Parallel Processing of Distributed Video Coding to Reduce Decoding Time

    NASA Astrophysics Data System (ADS)

    Tonomura, Yoshihide; Nakachi, Takayuki; Fujii, Tatsuya; Kiya, Hitoshi

    This paper proposes a parallelized DVC framework that treats each bitplane independently to reduce the decoding time. Unfortunately, simple parallelization generates inaccurate bit probabilities because additional side information is not available for the decoding of subsequent bitplanes, which degrades encoding efficiency. Our solution is an effective estimation method that can calculate the bit probability as accurately as possible by index assignment without recourse to side information. Moreover, we improve the coding performance of Rate-Adaptive LDPC (RA-LDPC), which is used in the parallelized DVC framework. This proposal selects a fitting sparse matrix for each bitplane according to the syndrome rate estimation results at the encoder side. Simulations show that our parallelization method reduces the decoding time by up to 35[%] and achieves a bit rate reduction of about 10[%].

  13. Longitudinal Polarization of 12B in Muon Capture Reaction

    NASA Astrophysics Data System (ADS)

    Ami, H.; Kobayashi, M.; Ohtsubo, H.; Morita, M.

    1981-02-01

    A general formula is given for the longitudinal polarization of the recoil nucleus in polarized muon capture in a spin zero nucleus. The longitudinal polarization of the recoil 12B is studied numerically in the reaction 12C+μ^-to12B+ν_μ. Contributions from excited states play an important role in determining the induced pseudoscalar and induced tensor form factors. Existing experimental data on the longitudinal polarization and average polarization are consistent with the assumption of time reversal invariance.

  14. Context-based lossless image compression with optimal codes for discretized Laplacian distributions

    NASA Astrophysics Data System (ADS)

    Giurcaneanu, Ciprian Doru; Tabus, Ioan; Stanciu, Cosmin

    2003-05-01

    Lossless image compression has become an important research topic, especially in relation with the JPEG-LS standard. Recently, the techniques known for designing optimal codes for sources with infinite alphabets have been applied for the quantized Laplacian sources which have probability mass functions with two geometrically decaying tails. Due to the simple parametric model of the source distribution the Huffman iterations are possible to be carried out analytically, using the concept of reduced source, and the final codes are obtained as a sequence of very simple arithmetic operations, avoiding the need to store coding tables. We propose the use of these (optimal) codes in conjunction with context-based prediction, for noiseless compression of images. To reduce further the average code length, we design Escape sequences to be employed when the estimation of the distribution parameter is unreliable. Results on standard test files show improvements in compression ratio when comparing with JPEG-LS.

  15. Computer code for the calculation of the temperature distribution of cooled turbine blades

    NASA Astrophysics Data System (ADS)

    Tietz, Thomas A.; Koschel, Wolfgang W.

    A generalized computer code for the calculation of the temperature distribution in a cooled turbine blade is presented. Using an iterative procedure, this program especially allows the coupling of the aerothermodynamic values of the internal flow with the corresponding temperature distribution of the blade material. The temperature distribution of the turbine blade is calculated using a fully three-dimensional finite element computer code, so that the radial heat flux is taken into account. This code was extended to 4-node tetrahedral elements enabling an adaptive grid generation. To facilitate the mesh generation of the usually complex blade geometries, a computer program was developed, which performs the grid generation of blades having basically arbitrary shape on the basis of two-dimensional cuts. The performance of the code is demonstrated with reference to a typical cooling configuration of a modern turbine blade.

  16. High-capacity quantum Fibonacci coding for key distribution

    NASA Astrophysics Data System (ADS)

    Simon, David S.; Lawrence, Nate; Trevino, Jacob; Dal Negro, Luca; Sergienko, Alexander V.

    2013-03-01

    Quantum cryptography and quantum key distribution (QKD) have been the most successful applications of quantum information processing, highlighting the unique capability of quantum mechanics, through the no-cloning theorem, to securely share encryption keys between two parties. Here, we present an approach to high-capacity, high-efficiency QKD by exploiting cross-disciplinary ideas from quantum information theory and the theory of light scattering of aperiodic photonic media. We propose a unique type of entangled-photon source, as well as a physical mechanism for efficiently sharing keys. The key-sharing protocol combines entanglement with the mathematical properties of a recursive sequence to allow a realization of the physical conditions necessary for implementation of the no-cloning principle for QKD, while the source produces entangled photons whose orbital angular momenta (OAM) are in a superposition of Fibonacci numbers. The source is used to implement a particular physical realization of the protocol by randomly encoding the Fibonacci sequence onto entangled OAM states, allowing secure generation of long keys from few photons. Unlike in polarization-based protocols, reference frame alignment is unnecessary, while the required experimental setup is simpler than other OAM-based protocols capable of achieving the same capacity and its complexity grows less rapidly with increasing range of OAM used.

  17. Complex phylogenetic distribution of a non-canonical genetic code in green algae

    PubMed Central

    2010-01-01

    Background A non-canonical nuclear genetic code, in which TAG and TAA have been reassigned from stop codons to glutamine, has evolved independently in several eukaryotic lineages, including the ulvophycean green algal orders Dasycladales and Cladophorales. To study the phylogenetic distribution of the standard and non-canonical genetic codes, we generated sequence data of a representative set of ulvophycean green algae and used a robust green algal phylogeny to evaluate different evolutionary scenarios that may account for the origin of the non-canonical code. Results This study demonstrates that the Dasycladales and Cladophorales share this alternative genetic code with the related order Trentepohliales and the genus Blastophysa, but not with the Bryopsidales, which is sister to the Dasycladales. This complex phylogenetic distribution whereby all but one representative of a single natural lineage possesses an identical deviant genetic code is unique. Conclusions We compare different evolutionary scenarios for the complex phylogenetic distribution of this non-canonical genetic code. A single transition to the non-canonical code followed by a reversal to the canonical code in the Bryopsidales is highly improbable due to the profound genetic changes that coincide with codon reassignment. Multiple independent gains of the non-canonical code, as hypothesized for ciliates, are also unlikely because the same deviant code has evolved in all lineages. Instead we favor a stepwise acquisition model, congruent with the ambiguous intermediate model, whereby the non-canonical code observed in these green algal orders has a single origin. We suggest that the final steps from an ambiguous intermediate situation to a non-canonical code have been completed in the Trentepohliales, Dasycladales, Cladophorales and Blastophysa but not in the Bryopsidales. We hypothesize that in the latter lineage an initial stage characterized by translational ambiguity was not followed by final

  18. High performance distributed acoustic sensor using cyclic pulse coding in a direct detection coherent-OTDR

    NASA Astrophysics Data System (ADS)

    Muanenda, Yonas; Oton, Claudio J.; Faralli, Stefano; Di Pasquale, Fabrizio

    2015-07-01

    We propose and experimentally demonstrate a Distributed Acoustic Sensor exploiting cyclic Simplex coding in a phase-sensitive OTDR on standard single mode fibers based on direct detection. Suitable design of the source and use of cyclic coding is shown to improve the SNR of the coherent back-scattered signal by up to 9 dB, reducing fading due to modulation instability and enabling accurate long-distance measurement of vibrations with minimal post-processing.

  19. Correlation channel modeling for practical Slepian-Wolf distributed video compression system using irregular LDPC codes

    NASA Astrophysics Data System (ADS)

    Li, Li; Hu, Xiao; Zeng, Rui

    2007-11-01

    The development of practical distributed video coding schemes is based on the consequence of information-theoretic bounds established in the 1970s by Slepian and Wolf for distributed lossless coding, and by Wyner and Ziv for lossy coding with decoder side information. In distributed video compression application, it is hard to accurately describe the non-stationary behavior of the virtual correlation channel between X and side information Y although it plays a very important role in overall system performance. In this paper, we implement a practical Slepian-Wolf asymmetric distributed video compression system using irregular LDPC codes. Moreover, based on exploiting the dependencies of previously decode bit planes from video frame X and side information Y, we present improvement schemes to divide different reliable regions. Our simulation results show improving schemes of exploiting the dependencies between previously decoded bit planes can get better overall encoding rate performance as BER approach zero. We also show, compared with BSC model, BC channel model is more suitable for distributed video compression scenario because of the non-stationary properties of the virtual correlation channel and adaptive detecting channel model parameters from previously adjacent decoded bit planes can provide more accurately initial belief messages from channel at LDPC decoder.

  20. 17 CFR 240.12b-2 - Definitions.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... management and policies of a person, whether through the ownership of voting securities, by contract, or... subsidiaries. Editorial Note: For Federal Register citations affecting § 240.12b-1, see the List of CFR... is a substantial likelihood that a reasonable investor would attach importance in determining...

  1. 19 CFR 11.12b - Labeling textile fiber products.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... promulgated thereunder by the Federal Trade Commission (16 CFR part 303) unless exempt from marking or..., delivery to, or for use by the ultimate consumer. Rule 31 of the Federal Trade Commission (16 CFR 303.31... 19 Customs Duties 1 2012-04-01 2012-04-01 false Labeling textile fiber products. 11.12b Section...

  2. 19 CFR 11.12b - Labeling textile fiber products.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... promulgated thereunder by the Federal Trade Commission (16 CFR part 303) unless exempt from marking or..., delivery to, or for use by the ultimate consumer. Rule 31 of the Federal Trade Commission (16 CFR 303.31... 19 Customs Duties 1 2014-04-01 2014-04-01 false Labeling textile fiber products. 11.12b Section...

  3. 17 CFR 240.12b-2 - Definitions.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... subsidiaries. Editorial Note: For Federal Register citations affecting § 240.12b-1, see the List of CFR... contract with the issuer of the securities as to which he is underwriter. Promoter. (1) The term “promoter... solely as underwriting commissions or solely in consideration of property shall not be deemed a...

  4. 17 CFR 240.12b-2 - Definitions.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... subsidiaries. Editorial Note: For Federal Register citations affecting § 240.12b-1, see the List of CFR... contract with the issuer of the securities as to which he is underwriter. Promoter. (1) The term “promoter... solely as underwriting commissions or solely in consideration of property shall not be deemed a...

  5. 17 CFR 240.12b-2 - Definitions.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... subsidiaries. Editorial Note: For Federal Register citations affecting § 240.12b-1, see the List of CFR... contract with the issuer of the securities as to which he is underwriter. Promoter. (1) The term “promoter... solely as underwriting commissions or solely in consideration of property shall not be deemed a...

  6. 19 CFR 11.12b - Labeling textile fiber products.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... promulgated thereunder by the Federal Trade Commission (16 CFR part 303) unless exempt from marking or..., delivery to, or for use by the ultimate consumer. Rule 31 of the Federal Trade Commission (16 CFR 303.31... THE TREASURY PACKING AND STAMPING; MARKING Marking § 11.12b Labeling textile fiber products....

  7. 19 CFR 11.12b - Labeling textile fiber products.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... promulgated thereunder by the Federal Trade Commission (16 CFR part 303) unless exempt from marking or..., delivery to, or for use by the ultimate consumer. Rule 31 of the Federal Trade Commission (16 CFR 303.31... 19 Customs Duties 1 2010-04-01 2010-04-01 false Labeling textile fiber products. 11.12b Section...

  8. Modelling dose distribution in tubing and cable using CYLTRAN and ACCEPT Monte Carlo simulation code

    SciTech Connect

    Weiss, D.E.; Kensek, R.P.

    1993-12-31

    One of the difficulties in the irradiation of non-slab geometries, such as a tube, is the uneven penetration of the electrons. A simple model of the distribution of dose in a tube or cable in relationship to voltage, composition, wall thickness and diameter can be mapped using the cylinder geometry provided for in the ITS/CYLTRAN code, complete with automatic subzoning. The reality of more complex 3D geometry to include effects of window foil, backscattering fixtures and beam scanning angles can be more completely accounted for by using the ITS/ACCEPT code with a line source update and a system of intersecting wedges to define input zones for mapping dose distributions in a tube. Thus, all of the variables that affect dose distribution can be modelled without the need to run time consuming and costly factory experiments. The effects of composition changes on dose distribution can also be anticipated.

  9. A distributed code for color in natural scenes derived from center-surround filtered cone signals

    PubMed Central

    Kellner, Christian J.; Wachtler, Thomas

    2013-01-01

    In the retina of trichromatic primates, chromatic information is encoded in an opponent fashion and transmitted to the lateral geniculate nucleus (LGN) and visual cortex via parallel pathways. Chromatic selectivities of neurons in the LGN form two separate clusters, corresponding to two classes of cone opponency. In the visual cortex, however, the chromatic selectivities are more distributed, which is in accordance with a population code for color. Previous studies of cone signals in natural scenes typically found opponent codes with chromatic selectivities corresponding to two directions in color space. Here we investigated how the non-linear spatio-chromatic filtering in the retina influences the encoding of color signals. Cone signals were derived from hyper-spectral images of natural scenes and preprocessed by center-surround filtering and rectification, resulting in parallel ON and OFF channels. Independent Component Analysis (ICA) on these signals yielded a highly sparse code with basis functions that showed spatio-chromatic selectivities. In contrast to previous analyses of linear transformations of cone signals, chromatic selectivities were not restricted to two main chromatic axes, but were more continuously distributed in color space, similar to the population code of color in the early visual cortex. Our results indicate that spatio-chromatic processing in the retina leads to a more distributed and more efficient code for natural scenes. PMID:24098289

  10. Frequency-coded quantum key distribution using amplitude-phase modulation

    NASA Astrophysics Data System (ADS)

    Morozov, Oleg G.; Gabdulkhakov, Il'daris M.; Morozov, Gennady A.; Zagrieva, Aida R.; Sarvarova, Lutsia M.

    2016-03-01

    Design principals of universal microwave photonics system for quantum key distribution with frequency coding are concerned. Its concept is based on the possibility of creating the multi-functional units to implement the most commonly used technologies of frequency coding: amplitude, phase and combined amplitude-phase modulation and re-modulation of optical carrier. The characteristics of advanced systems based on classical approaches and prospects of their development using a combination of amplitude modulation and phase commutation are discussed. These are the valuations how to build advanced systems with frequency coding quantum key distribution, including at their symmetric and asymmetric constructions, using of the mechanisms of the photon polarization states passive detection, based on the filters for wavelength division multiplexing of modulated optical carrier side components.

  11. Offset Manchester coding for Rayleigh noise suppression in carrier-distributed WDM-PONs

    NASA Astrophysics Data System (ADS)

    Xu, Jing; Yu, Xiangyu; Lu, Weichao; Qu, Fengzhong; Deng, Ning

    2015-07-01

    We propose a novel offset Manchester coding in upstream to simultaneously realize Rayleigh noise suppression and differential detection in a carrier-distributed wavelength division multiplexed passive optical network. Error-free transmission of 2.5-Gb/s upstream signals over 50-km standard single mode fiber is experimentally demonstrated, with a 7-dB enhanced tolerance to Rayleigh noise.

  12. Thermal Phase Variations of WASP-12b: Defying Predictions

    NASA Technical Reports Server (NTRS)

    Cowan, Nicolas B.; Machalek, Pavel; Croll, Bryce; Shekhtman, Louis M.; Burrows, Adam; Deming, Drake; Greene, Tom; Hora, Joseph L.

    2012-01-01

    We report Warm Spitzer full-orbit phase observations of WASP-12b at 3.6 and 4.5 micrometers. This extremely inflated hot Jupiter is thought to be overflowing its Roche lobe, undergoing mass loss and accretion onto its host star, and has been claimed to have a C/O ratio in excess of unity. We are able to measure the transit depths, eclipse depths, thermal and ellipsoidal phase variations at both wavelengths. The large-amplitude phase variations, combined with the planet's previously measured dayside spectral energy distribution, are indicative of non-zero Bond albedo and very poor day-night heat redistribution. The transit depths in the mid-infrared-(R(sub p)/R(sub *))(sup 2) = 0.0123(3) and 0.0111(3) at 3.6 and 4.5 micrometers, respectively-indicate that the atmospheric opacity is greater at 3.6 than at 4.5 micrometers, in disagreement with model predictions, irrespective of C/O ratio. The secondary eclipse depths are consistent with previous studies: F(sub day)/F(sub *) = 0.0038(4) and 0.0039(3) at 3.6 and 4.5 micrometers, respectively. We do not detect ellipsoidal variations at 3.6 micrometers, but our parameter uncertainties-estimated via prayer-bead Monte Carlo-keep this non-detection consistent with model predictions. At 4.5 micrometers, on the other hand, we detect ellipsoidal variations that are much stronger than predicted. If interpreted as a geometric effect due to the planet's elongated shape, these variations imply a 3:2 ratio for the planet's longest:shortest axes and a relatively bright day-night terminator. If we instead presume that the 4.5 micrometer ellipsoidal variations are due to uncorrected systematic noise and we fix the amplitude of the variations to zero, the best-fit 4.5 micrometer transit depth becomes commensurate with the 3.6 micrometer depth, within the uncertainties. The relative transit depths are then consistent with a solar composition and short scale height at the terminator. Assuming zero ellipsoidal variations also yields a much

  13. THERMAL PHASE VARIATIONS OF WASP-12b: DEFYING PREDICTIONS

    SciTech Connect

    Cowan, Nicolas B.; Shekhtman, Louis M.; Machalek, Pavel; Croll, Bryce; Burrows, Adam; Deming, Drake; Greene, Tom; Hora, Joseph L.

    2012-03-01

    We report Warm Spitzer full-orbit phase observations of WASP-12b at 3.6 and 4.5 {mu}m. This extremely inflated hot Jupiter is thought to be overflowing its Roche lobe, undergoing mass loss and accretion onto its host star, and has been claimed to have a C/O ratio in excess of unity. We are able to measure the transit depths, eclipse depths, thermal and ellipsoidal phase variations at both wavelengths. The large-amplitude phase variations, combined with the planet's previously measured dayside spectral energy distribution, are indicative of non-zero Bond albedo and very poor day-night heat redistribution. The transit depths in the mid-infrared-(R{sub p} /R{sub *}){sup 2} = 0.0123(3) and 0.0111(3) at 3.6 and 4.5 {mu}m, respectively-indicate that the atmospheric opacity is greater at 3.6 than at 4.5 {mu}m, in disagreement with model predictions, irrespective of C/O ratio. The secondary eclipse depths are consistent with previous studies: F{sub day}/F{sub *} = 0.0038(4) and 0.0039(3) at 3.6 and 4.5 {mu}m, respectively. We do not detect ellipsoidal variations at 3.6 {mu}m, but our parameter uncertainties-estimated via prayer-bead Monte Carlo-keep this non-detection consistent with model predictions. At 4.5 {mu}m, on the other hand, we detect ellipsoidal variations that are much stronger than predicted. If interpreted as a geometric effect due to the planet's elongated shape, these variations imply a 3:2 ratio for the planet's longest:shortest axes and a relatively bright day-night terminator. If we instead presume that the 4.5 {mu}m ellipsoidal variations are due to uncorrected systematic noise and we fix the amplitude of the variations to zero, the best-fit 4.5 {mu}m transit depth becomes commensurate with the 3.6 {mu}m depth, within the uncertainties. The relative transit depths are then consistent with a solar composition and short scale height at the terminator. Assuming zero ellipsoidal variations also yields a much deeper 4.5 {mu}m eclipse depth, consistent with a

  14. Thermal Phase Variations of WASP-12b: Defying Predictions

    NASA Astrophysics Data System (ADS)

    Cowan, Nicolas B.; Machalek, Pavel; Croll, Bryce; Shekhtman, Louis M.; Burrows, Adam; Deming, Drake; Greene, Tom; Hora, Joseph L.

    2012-03-01

    We report Warm Spitzer full-orbit phase observations of WASP-12b at 3.6 and 4.5 μm. This extremely inflated hot Jupiter is thought to be overflowing its Roche lobe, undergoing mass loss and accretion onto its host star, and has been claimed to have a C/O ratio in excess of unity. We are able to measure the transit depths, eclipse depths, thermal and ellipsoidal phase variations at both wavelengths. The large-amplitude phase variations, combined with the planet's previously measured dayside spectral energy distribution, are indicative of non-zero Bond albedo and very poor day-night heat redistribution. The transit depths in the mid-infrared—(Rp /R *)2 = 0.0123(3) and 0.0111(3) at 3.6 and 4.5 μm, respectively—indicate that the atmospheric opacity is greater at 3.6 than at 4.5 μm, in disagreement with model predictions, irrespective of C/O ratio. The secondary eclipse depths are consistent with previous studies: F day/F * = 0.0038(4) and 0.0039(3) at 3.6 and 4.5 μm, respectively. We do not detect ellipsoidal variations at 3.6 μm, but our parameter uncertainties—estimated via prayer-bead Monte Carlo—keep this non-detection consistent with model predictions. At 4.5 μm, on the other hand, we detect ellipsoidal variations that are much stronger than predicted. If interpreted as a geometric effect due to the planet's elongated shape, these variations imply a 3:2 ratio for the planet's longest:shortest axes and a relatively bright day-night terminator. If we instead presume that the 4.5 μm ellipsoidal variations are due to uncorrected systematic noise and we fix the amplitude of the variations to zero, the best-fit 4.5 μm transit depth becomes commensurate with the 3.6 μm depth, within the uncertainties. The relative transit depths are then consistent with a solar composition and short scale height at the terminator. Assuming zero ellipsoidal variations also yields a much deeper 4.5 μm eclipse depth, consistent with a solar composition and modest

  15. Carbon-rich planet formation in a solar composition disk: The example of WASP 12b

    NASA Astrophysics Data System (ADS)

    Ali-Dib, M.; Mousis, O.; Petit, J.-M.; Lunine, J. I.

    2014-04-01

    The recent observation of WASP 12b, a giant planet with a C/O value larger than that estimated for its host star, poses a conundrum for understanding the origin of this elemental ratio in any given planetary system. We propose a mechanism for enhancing the value of C/O in the disk through the transport and distribution of volatiles.We construct a model that computes the abundances of major C and O bearing volatiles under the influence of gas drag, sublimation, vapor diffusion, condensation and coagulation in a multi-iceline 1+1D protoplanetary disk. We find a gradual depletion in water and carbon monoxide vapors inside the water's iceline with carbon monoxide depleting slower than water.This effect increases the gaseous C/O and decreases the C/H ratio in this region to values similar to those found in WASP 12b's day side atmosphere.

  16. Performance and Application of Parallel OVERFLOW Codes on Distributed and Shared Memory Platforms

    NASA Technical Reports Server (NTRS)

    Djomehri, M. Jahed; Rizk, Yehia M.

    1999-01-01

    The presentation discusses recent studies on the performance of the two parallel versions of the aerodynamics CFD code, OVERFLOW_MPI and _MLP. Developed at NASA Ames, the serial version, OVERFLOW, is a multidimensional Navier-Stokes flow solver based on overset (Chimera) grid technology. The code has recently been parallelized in two ways. One is based on the explicit message-passing interface (MPI) across processors and uses the _MPI communication package. This approach is primarily suited for distributed memory systems and workstation clusters. The second, termed the multi-level parallel (MLP) method, is simple and uses shared memory for all communications. The _MLP code is suitable on distributed-shared memory systems. For both methods, the message passing takes place across the processors or processes at the advancement of each time step. This procedure is, in effect, the Chimera boundary conditions update, which is done in an explicit "Jacobi" style. In contrast, the update in the serial code is done in more of the "Gauss-Sidel" fashion. The programming efforts for the _MPI code is more complicated than for the _MLP code; the former requires modification of the outer and some inner shells of the serial code, whereas the latter focuses only on the outer shell of the code. The _MPI version offers a great deal of flexibility in distributing grid zones across a specified number of processors in order to achieve load balancing. The approach is capable of partitioning zones across multiple processors or sending each zone and/or cluster of several zones into a single processor. The message passing across the processors consists of Chimera boundary and/or an overlap of "halo" boundary points for each partitioned zone. The MLP version is a new coarse-grain parallel concept at the zonal and intra-zonal levels. A grouping strategy is used to distribute zones into several groups forming sub-processes which will run in parallel. The total volume of grid points in each

  17. A hybrid quantum key distribution protocol based on extended unitary operations and fountain codes

    NASA Astrophysics Data System (ADS)

    Lai, Hong; Xue, Liyin; Orgun, Mehmet A.; Xiao, Jinghua; Pieprzyk, Josef

    2015-02-01

    In 1984, Bennett and Brassard designed the first quantum key distribution protocol, whose security is based on quantum indeterminacy. Since then, there has been growing research activities, aiming in designing new, more efficient and secure key distribution protocols. The work presents a novel hybrid quantum key distribution protocol. The key distribution is derived from both quantum and classical data. This is why it is called hybrid. The protocol applies extended unitary operations derived from four basic unitary operations and distributed fountain codes. Compared to other protocols published so far, the new one is more secure (provides authentication of parties and detection of eavesdropping) and efficient. Moreover, our protocol still works over noisy and lossy channels.

  18. Non-contact assessment of melanin distribution via multispectral temporal illumination coding

    NASA Astrophysics Data System (ADS)

    Amelard, Robert; Scharfenberger, Christian; Wong, Alexander; Clausi, David A.

    2015-03-01

    Melanin is a pigment that is highly absorptive in the UV and visible electromagnetic spectra. It is responsible for perceived skin tone, and protects against harmful UV effects. Abnormal melanin distribution is often an indicator for melanoma. We propose a novel approach for non-contact melanin distribution via multispectral temporal illumination coding to estimate the two-dimensional melanin distribution based on its absorptive characteristics. In the proposed system, a novel multispectral, cross-polarized, temporally-coded illumination sequence is synchronized with a camera to measure reflectance under both multispectral and ambient illumination. This allows us to eliminate the ambient illumination contribution from the acquired reflectance measurements, and also to determine the melanin distribution in an observed region based on the spectral properties of melanin using the Beer-Lambert law. Using this information, melanin distribution maps can be generated for objective, quantitative assessment of skin type of individuals. We show that the melanin distribution map correctly identifies areas with high melanin densities (e.g., nevi).

  19. Fast parallel implementation of multidimensional data-domain FORTRAN codes on distributed-memory processor arrays

    NASA Astrophysics Data System (ADS)

    Reale, F.; Barbera, M.; Sciortino, S.

    1992-11-01

    We illustrate a general and straightforward approach to develop FORTRAN parallel two-dimensional data-domain applications on distributed-memory systems, such as those based on transputers. We have aimed at achieving flexibility for different processor topologies and processor numbers, non-homogeneous processor configurations and coarse load-balancing. We have assumed a master-slave architecture as basic programming model in the framework of a domain decomposition approach. After developing a library of high-level general network and communication routines, based on low-level system-dependent libraries, we have used it to parallelize some specific applications: an elementary 2-D code, useful as a pattern and guide for other more complex applications, and a 2-D hydrodynamic code for astrophysical studies. Code parallelization is achieved by splitting the original code into two independent codes, one for the master and the other for the slaves, and then by adding coordinated calls to network setting and message-passing routines into the programs. The parallel applications have been implemented on a Meiko Computing Surface hosted by a SUN 4 workstation and running CSTools software package. After the basic network and communication routines were developed, the task of parallelizing the 2-D hydrodynamic code took approximately 12 man hours. The parallel efficiency of the code ranges between 98% and 58% on arrays between 2 and 20 T800 transputers, on a relatively small computational mesh (≈3000 cells). Arrays consisting of a limited number of faster Intel i860 processors achieve a high parallel efficiency on large computational grids (> 10000 grid points) with performances in the class of minisupercomputers.

  20. Further results on fault-tolerant distributed classification using error-correcting codes

    NASA Astrophysics Data System (ADS)

    Wang, Tsang-Yi; Han, Yunghsiang S.; Varshney, Pramod K.

    2004-04-01

    In this paper, we consider the distributed classification problem in wireless sensor networks. The DCFECC-SD approach employing the binary code matrix has recently been proposed to cope with the errors caused by both sensor faults and the effect of fading channels. The DCFECC-SD approach extends the DCFECC approach by using soft decision decoding to combat channel fading. However, the performance of the system employing the binary code matrix could be degraded if the distance between different hypotheses can not be kept large. This situation could happen when the number of sensor is small or the number of hypotheses is large. In this paper, we design the DCFECC-SD approach employing the D-ary code matrix, where D>2. Simulation results show that the performance of the DCFECC-SD approach employing the D-ary code matrix is better than that of the DCFECC-SD approach employing the binary code matrix. Performance evaluation of DCFECC-SD using different number of bits of local decision information is also provided when the total channel energy output from each sensor node is fixed.

  1. Examination of nanoparticle dispersion using a novel GPU based radial distribution function code

    NASA Astrophysics Data System (ADS)

    Rosch, Thomas; Wade, Matthew; Phelan, Frederick

    We have developed a novel GPU-based code that rapidly calculates radial distribution function (RDF) for an entire system, with no cutoff, ensuring accuracy. Built on top of this code, we have developed tools to calculate the second virial coefficient (B2) and the structure factor from the RDF, two properties that are directly related to the dispersion of nanoparticles in nancomposite systems. We validate the RDF calculations by comparison with previously published results, and also show how our code, which takes into account bonding in polymeric systems, enables more accurate predictions of g(r) than current state of the art GPU-based RDF codes currently available for these systems. In addition, our code reduces the computational time by approximately an order of magnitude compared to CPU-based calculations. We demonstrate the application of our toolset by the examination of a coarse-grained nanocomposite system and show how different surface energies between particle and polymer lead to different dispersion states, and effect properties such as viscosity, yield strength, elasticity, and thermal conductivity.

  2. Application of the TEMPEST computer code for simulating hydrogen distribution in model containment structures. [PWR; BWR

    SciTech Connect

    Trent, D.S.; Eyler, L.L.

    1982-09-01

    In this study several aspects of simulating hydrogen distribution in geometric configurations relevant to reactor containment structures were investigated using the TEMPEST computer code. Of particular interest was the performance of the TEMPEST turbulence model in a density-stratified environment. Computed results illustrated that the TEMPEST numerical procedures predicted the measured phenomena with good accuracy under a variety of conditions and that the turbulence model used is a viable approach in complex turbulent flow simulation.

  3. Interfacing a fluid code (Induct95) with a particle code (PDP1) to obtain ion energy distributions in inductive and capacitive discharges

    SciTech Connect

    Kawamura, E.; Verboncoeur, J.P.; Birdsall, C.K.

    1996-12-31

    The goal is to obtain the ion angular and energy distributions at the wafer of inductive and capacitive discharges. To do this on a standard uniform mesh with particle codes alone would be impractical because of the long time scale nature of the problem (i.e., 10{sup 6} time steps). A solution is to use a fluid code to simulate the bulk source region, while using a particle-in-cell code to simulate the sheath region. Induct95 is a 2d fluid code which can simulate inductive and capacitive discharges. Though it does not resolve the sheath region near the wafer, it provides diagnostics for the collisional bulk plasma (i.e., potentials, temperatures, fluxes, etc.). Also, fluid codes converge to equilibrium much faster than particle codes in collisional regimes PDP1 is a 1d3v particle-in-cell code which can simulate rf discharges. It can resolve the sheath region and obtain the ion angular and energy distributions at the wafer target. The overall running time is expected to be that of the fluid code.

  4. High Resolution Spectroscopy of 12B_Lambda by Electroproduction

    SciTech Connect

    M. Iodice; F. Cusanno; A. Acha; P. Ambrozewicz; K.A. Aniol; P. Baturin; P.Y. Bertin; H. Benaoum; K.I. Blomqvist; W.U. Boeglin; H. Breuer; P. Brindza; P. Bydˇzovsk´y; A. Camsonne; C.C. Chang; J.-P. Chen; Seonho Choi; E.A. Chudakov; E. Cisbani; S. Colilli; L. Coman; B.J. Craver; G. De Cataldo; C.W. de Jager; R. De Leo; A.P. Deur; C. Ferdi; R.J. Feuerbach; E. Folts; R. Fratoni; S. Frullani; F. Garibaldi; O. Gayou; F. Giulani; J. Gomez; M. Gricia; J.O. Hansen; D. Hayes; D.W. Higinbotham; T.K. Holmstrom; C.E. Hyde; H.F. Ibrahim; X. Jiang; L.J. Kaufman; K. Kino; B. Kross; L. Lagamba; J.J. LeRose; R.A. Lindgren; M. Lucentini; D.J. Margaziotis; P. Markowitz; S. Marrone; Z.E. Meziani; K. McCormick; R.W. Michaels; D.J. Millener; T. Miyoshi; B. Moffit; P.A. Monaghan; M. Moteabbed; C. Munoz Camacho; S. Nanda; E. Nappi; V.V. Nelyubin; B.E. Norum; Y. Okasyasu; K.D. Paschke; C.F. Perdrisat; E. Piasetzky; V.A. Punjabi; Y. Qiang; B. Raue; P.E. Reimer; J. Reinhold; B. Reitz; R.E. Roche; V.M. Rodriguez; A. Saha; F. Santavenere; A.J. Sarty; J. Segal; A. Shahinyan; J. Singh; S. ˇ Sirca; R. Snyder; P.H. Solvignon; M. Sotona; R. Subedi; V.A. Sulkosky; T. Suzuki; H. Ueno; P.E. Ulmer; G.M. Urciuoli; P. Veneroni; E. Voutier; B.B. Wojtsekhowski; X. Zheng; and C. Zorn

    2007-07-01

    An experiment measuring electroproduction of hypernuclei has been performed in Hall A at Jefferson Lab on a $^{12}$C target. In order to increase counting rates and provide unambiguous kaon identification two superconducting septum magnets and a Ring Imaging CHerenkov detector (RICH) were added to the Hall A standard equipment. An unprecedented energy resolution of less than 700 keV FWHM has been achieved. Thus, the observed \\lam{12}{B} spectrum shows for the first time identifiable strength in the core-excited region between the ground-state {\\it s}-wave $\\Lambda$ peak and the 11 MeV {\\it p}-wave $\\Lambda$ peak.

  5. High resolution spectroscopy of (lambda)(12)B by electroproduction.

    PubMed

    Iodice, M; Cusanno, F; Acha, A; Ambrozewicz, P; Aniol, K A; Baturin, P; Bertin, P Y; Benaoum, H; Blomqvist, K I; Boeglin, W U; Breuer, H; Brindza, P; Bydzovský, P; Camsonne, A; Chang, C C; Chen, J-P; Choi, Seonho; Chudakov, E A; Cisbani, E; Colilli, S; Coman, L; Craver, B J; De Cataldo, G; de Jager, C W; De Leo, R; Deur, A P; Ferdi, C; Feuerbach, R J; Folts, E; Fratoni, R; Frullani, S; Garibaldi, F; Gayou, O; Giulani, F; Gomez, J; Gricia, M; Hansen, J O; Hayes, D; Higinbotham, D W; Holmstrom, T K; Hyde, C E; Ibrahim, H F; Jiang, X; Kaufman, L J; Kino, K; Kross, B; Lagamba, L; LeRose, J J; Lindgren, R A; Lucentini, M; Margaziotis, D J; Markowitz, P; Marrone, S; Meziani, Z E; McCormick, K; Michaels, R W; Millener, D J; Miyoshi, T; Moffit, B; Monaghan, P A; Moteabbed, M; Muñoz Camacho, C; Nanda, S; Nappi, E; Nelyubin, V V; Norum, B E; Okasyasu, Y; Paschke, K D; Perdrisat, C F; Piasetzky, E; Punjabi, V A; Qiang, Y; Raue, B; Reimer, P E; Reinhold, J; Reitz, B; Roche, R E; Rodriguez, V M; Saha, A; Santavenere, F; Sarty, A J; Segal, J; Shahinyan, A; Singh, J; Sirca, S; Snyder, R; Solvignon, P H; Sotona, M; Subedi, R; Sulkosky, V A; Suzuki, T; Ueno, H; Ulmer, P E; Urciuoli, G M; Veneroni, P; Voutier, E; Wojtsekhowski, B B; Ye, Y; Zheng, X; Zhou, S; Zorn, C

    2007-08-01

    An experiment measuring electroproduction of hypernuclei has been performed in hall A at Jefferson Lab on a 12C target. In order to increase counting rates and provide unambiguous kaon identification two superconducting septum magnets and a ring imaging Cherenkov detector were added to the hall A standard equipment. An unprecedented energy resolution of less than 700 keV FWHM has been achieved. Thus, the observed (Lambda)(12)B spectrum shows for the first time identifiable strength in the core-excited region between the ground-state s-wave Lambda peak and the 11 MeV p-wave Lambda peak. PMID:17930747

  6. Spatial information outflow from the hippocampal circuit: distributed spatial coding and phase precession in the subiculum

    PubMed Central

    Kim, Steve M.; Ganguli, Surya; Frank, Loren M.

    2012-01-01

    Hippocampal place cells convey spatial information through a combination of spatially-selective firing and theta phase precession. The way in which this information influences regions like the subiculum that receive input from the hippocampus remains unclear. The subiculum receives direct inputs from area CA1 of the hippocampus and sends divergent output projections to many other parts of the brain, so we examined the firing patterns of rat subicular neurons. We found a substantial transformation in the subicular code for space from sparse to dense firing rate representations along a proximal-distal anatomical gradient: neurons in the proximal subiculum are more similar to canonical, sparsely firing hippocampal place cells, whereas neurons in the distal subiculum have higher firing rates and more distributed spatial firing patterns. Using information theory, we found that the more distributed spatial representation in the subiculum carries, on average, more information about spatial location and context than the sparse spatial representation in CA1. Remarkably, despite the disparate firing rate properties of subicular neurons, we found that neurons at all proximal-distal locations exhibit robust theta phase precession, with similar spiking oscillation frequencies as neurons in area CA1. Our findings suggest that the subiculum is specialized to compress sparse hippocampal spatial codes into highly informative distributed codes suitable for efficient communication to other brain regions. Moreover, despite this substantial compression, the subiculum maintains finer scale temporal properties that may allow it to participate in oscillatory phase coding and spike timing-dependent plasticity in coordination with other regions of the hippocampal circuit. PMID:22915100

  7. Measurement error and outcome distributions: Methodological issues in regression analyses of behavioral coding data

    PubMed Central

    Holsclaw, Tracy; Hallgren, Kevin A.; Steyvers, Mark; Smyth, Padhraic; Atkins, David C.

    2015-01-01

    Behavioral coding is increasingly used for studying mechanisms of change in psychosocial treatments for substance use disorders (SUDs). However, behavioral coding data typically include features that can be problematic in regression analyses, including measurement error in independent variables, non-normal distributions of count outcome variables, and conflation of predictor and outcome variables with third variables, such as session length. Methodological research in econometrics has shown that these issues can lead to biased parameter estimates, inaccurate standard errors, and increased type-I and type-II error rates, yet these statistical issues are not widely known within SUD treatment research, or more generally, within psychotherapy coding research. Using minimally-technical language intended for a broad audience of SUD treatment researchers, the present paper illustrates the nature in which these data issues are problematic. We draw on real-world data and simulation-based examples to illustrate how these data features can bias estimation of parameters and interpretation of models. A weighted negative binomial regression is introduced as an alternative to ordinary linear regression that appropriately addresses the data characteristics common to SUD treatment behavioral coding data. We conclude by demonstrating how to use and interpret these models with data from a study of motivational interviewing. SPSS and R syntax for weighted negative binomial regression models is included in supplementary materials. PMID:26098126

  8. Measurement error and outcome distributions: Methodological issues in regression analyses of behavioral coding data.

    PubMed

    Holsclaw, Tracy; Hallgren, Kevin A; Steyvers, Mark; Smyth, Padhraic; Atkins, David C

    2015-12-01

    Behavioral coding is increasingly used for studying mechanisms of change in psychosocial treatments for substance use disorders (SUDs). However, behavioral coding data typically include features that can be problematic in regression analyses, including measurement error in independent variables, non normal distributions of count outcome variables, and conflation of predictor and outcome variables with third variables, such as session length. Methodological research in econometrics has shown that these issues can lead to biased parameter estimates, inaccurate standard errors, and increased Type I and Type II error rates, yet these statistical issues are not widely known within SUD treatment research, or more generally, within psychotherapy coding research. Using minimally technical language intended for a broad audience of SUD treatment researchers, the present paper illustrates the nature in which these data issues are problematic. We draw on real-world data and simulation-based examples to illustrate how these data features can bias estimation of parameters and interpretation of models. A weighted negative binomial regression is introduced as an alternative to ordinary linear regression that appropriately addresses the data characteristics common to SUD treatment behavioral coding data. We conclude by demonstrating how to use and interpret these models with data from a study of motivational interviewing. SPSS and R syntax for weighted negative binomial regression models is included in online supplemental materials. PMID:26098126

  9. Reliability of Calderbank Shor Steane codes and security of quantum key distribution

    NASA Astrophysics Data System (ADS)

    Hamada, Mitsuru

    2004-08-01

    After Mayers (1996 Advances in Cryptography: Proc. Crypto'96 pp 343-57 2001 J. Assoc. Comput. Mach. 48 351-406) gave a proof of the security of the Bennett-Brassard (1984 Proc. IEEE Int. Conf. on Computers, Systems and Signal Processing (Bangalore, India) pp 175-9) (BB84) quantum key distribution protocol, Shor and Preskill (2000 Phys. Rev. Lett. 85 441-4) made a remarkable observation that a Calderbank-Shor-Steane (CSS) code had been implicitly used in the BB84 protocol, and suggested its security could be proved by bounding the fidelity, say Fn, of the incorporated CSS code of length n in the form 1-F_n \\le \\exp[-n E \\ {+}\\ o(n)] for some positive number E. This work presents such a number E = E(R) as a function of the rate of codes R, and a threshold R0 such that E(R) > 0 whenever R < R0, which is larger than the achievable rate based on the Gilbert-Varshamov bound that is essentially given by Shor and Preskill. The codes in the present work are robust against fluctuations of channel parameters, which fact is needed to establish the security rigorously and was not proved for rates above the Gilbert-Varshamov rate before in the literature. As a byproduct, the security of a modified BB84 protocol against any joint (coherent) attacks is proved quantitatively.

  10. Partially Key Distribution with Public Key Cryptosystem Based on Error Control Codes

    NASA Astrophysics Data System (ADS)

    Tavallaei, Saeed Ebadi; Falahati, Abolfazl

    Due to the low level of security in public key cryptosystems based on number theory, fundamental difficulties such as "key escrow" in Public Key Infrastructure (PKI) and a secure channel in ID-based cryptography, a new key distribution cryptosystem based on Error Control Codes (ECC) is proposed . This idea is done by some modification on McEliece cryptosystem. The security of ECC cryptosystem obtains from the NP-Completeness of block codes decoding. The capability of generating public keys with variable lengths which is suitable for different applications will be provided by using ECC. It seems that usage of these cryptosystems because of decreasing in the security of cryptosystems based on number theory and increasing the lengths of their keys would be unavoidable in future.

  11. Shared and Distributed Memory Parallel Security Analysis of Large-Scale Source Code and Binary Applications

    SciTech Connect

    Quinlan, D; Barany, G; Panas, T

    2007-08-30

    Many forms of security analysis on large scale applications can be substantially automated but the size and complexity can exceed the time and memory available on conventional desktop computers. Most commercial tools are understandably focused on such conventional desktop resources. This paper presents research work on the parallelization of security analysis of both source code and binaries within our Compass tool, which is implemented using the ROSE source-to-source open compiler infrastructure. We have focused on both shared and distributed memory parallelization of the evaluation of rules implemented as checkers for a wide range of secure programming rules, applicable to desktop machines, networks of workstations and dedicated clusters. While Compass as a tool focuses on source code analysis and reports violations of an extensible set of rules, the binary analysis work uses the exact same infrastructure but is less well developed into an equivalent final tool.

  12. LineCast: line-based distributed coding and transmission for broadcasting satellite images.

    PubMed

    Wu, Feng; Peng, Xiulian; Xu, Jizheng

    2014-03-01

    In this paper, we propose a novel coding and transmission scheme, called LineCast, for broadcasting satellite images to a large number of receivers. The proposed LineCast matches perfectly with the line scanning cameras that are widely adopted in orbit satellites to capture high-resolution images. On the sender side, each captured line is immediately compressed by a transform-domain scalar modulo quantization. Without syndrome coding, the transmission power is directly allocated to quantized coefficients by scaling the coefficients according to their distributions. Finally, the scaled coefficients are transmitted over a dense constellation. This line-based distributed scheme features low delay, low memory cost, and low complexity. On the receiver side, our proposed line-based prediction is used to generate side information from previously decoded lines, which fully utilizes the correlation among lines. The quantized coefficients are decoded by the linear least square estimator from the received data. The image line is then reconstructed by the scalar modulo dequantization using the generated side information. Since there is neither syndrome coding nor channel coding, the proposed LineCast can make a large number of receivers reach the qualities matching their channel conditions. Our theoretical analysis shows that the proposed LineCast can achieve Shannon's optimum performance by using a high-dimensional modulo-lattice quantization. Experiments on satellite images demonstrate that it achieves up to 1.9-dB gain over the state-of-the-art 2D broadcasting scheme and a gain of more than 5 dB over JPEG 2000 with forward error correction. PMID:24474371

  13. Hydrodynamics and Geochemical Modelling of CO2 Injection at the K12B Gas Field

    NASA Astrophysics Data System (ADS)

    Audigane, P.; Oldenburg, C.; van der Meer, B.; Geel, K.; Lions, J.; Gaus, I.; Robelin, C.; Durst, P.; Xu, T.

    2007-12-01

    This paper presents a numerical simulation study of CO2 injection into the nearly depleted gas reservoir at the K12B field, North Sea, selected as a demonstration site for the Offshore Re-injection of CO2 project. Simulations have been carried out using two different codes: TOUGHREACT for characterizing the geochemical fluid-rock interactions that may occur during the injection period (case A), and TOUGH2EOS7C for simulating the CO2 sequestration coupled with enhanced methane production (case B). The reactive transport modelling predict a rather low geochemical reactivity induced by such injection as the gas reservoir contained initially 13% of CO2 in the gas phase and therefore geochemical equilibrium has been established before injection starts. The simulations of the CH4 recovery estimate due to injection predict a short breakthrough time of 60 days and one year for the two producers, respectively. At the end of the 10 years of injection, CO2 remains at 96% under gas phase and structural trapping remains the main process for geological sequestration at the K12B field.

  14. Complete Distributed Hyper-Entangled-Bell-State Analysis and Quantum Super Dense Coding

    NASA Astrophysics Data System (ADS)

    Zheng, Chunhong; Gu, Yongjian; Li, Wendong; Wang, Zhaoming; Zhang, Jiying

    2016-02-01

    We propose a protocol to implement the distributed hyper-entangled-Bell-state analysis (HBSA) for photonic qubits with weak cross-Kerr nonlinearities, QND photon-number-resolving detection, and some linear optical elements. The distinct feature of our scheme is that the BSA for two different degrees of freedom can be implemented deterministically and nondestructively. Based on the present HBSA, we achieve quantum super dense coding with double information capacity, which makes our scheme more significant for long-distance quantum communication.

  15. ON THE ORBIT OF EXOPLANET WASP-12b

    SciTech Connect

    Campo, Christopher J.; Harrington, Joseph; Hardy, Ryan A.; Stevenson, Kevin B.; Nymeyer, Sarah; Lust, Nate B.; Blecic, Jasmina; Britt, Christopher B. T.; Bowman, William C.; Ragozzine, Darin; Anderson, David R.; Hellier, Coel; Maxted, Pierre F. L.; Collier-Cameron, Andrew; Wheatley, Peter J.; Loredo, Thomas J.; Deming, Drake; Hebb, Leslie; Pollaco, Don; West, Richard G.

    2011-02-01

    We observed two secondary eclipses of the exoplanet WASP-12b using the Infrared Array Camera on the Spitzer Space Telescope. The close proximity of WASP-12b to its G-type star results in extreme tidal forces capable of inducing apsidal precession with a period as short as a few decades. This precession would be measurable if the orbit had a significant eccentricity, leading to an estimate of the tidal Love number and an assessment of the degree of central concentration in the planetary interior. An initial ground-based secondary-eclipse phase reported by Lopez-Morales et al. (0.510 {+-} 0.002) implied eccentricity at the 4.5{sigma} level. The spectroscopic orbit of Hebb et al. has eccentricity 0.049 {+-} 0.015, a 3{sigma} result, implying an eclipse phase of 0.509 {+-} 0.007. However, there is a well-documented tendency of spectroscopic data to overestimate small eccentricities. Our eclipse phases are 0.5010 {+-} 0.0006 (3.6 and 5.8 {mu}m) and 0.5006 {+-} 0.0007 (4.5 and 8.0 {mu}m). An unlikely orbital precession scenario invoking an alignment of the orbit during the Spitzer observations could have explained this apparent discrepancy, but the final eclipse phase of Lopez-Morales et al. (0.510 {+-}{sup +0.007}{sub -0.006}) is consistent with a circular orbit at better than 2{sigma}. An orbit fit to all the available transit, eclipse, and radial-velocity data indicates precession at <1{sigma}; a non-precessing solution fits better. We also comment on analysis and reporting for Spitzer exoplanet data in light of recent re-analyses.

  16. High-precision photometry of WASP-12 b transits

    NASA Astrophysics Data System (ADS)

    Maciejewski, G.; Errmann, R.; Raetz, St.; Seeliger, M.; Spaleniak, I.; Neuhäuser, R.

    2011-04-01

    Aims: The transiting extrasolar planet WASP-12 b was found to be one of the most intensely irradiated exoplanets. It is unexpectedly bloated and is losing mass that may accrete into the host star. Our aim was to refine the parameters of this intriguing system and search for signs of transit timing variations. Methods: We gathered high-precision light curves for two transits of WASP-12 b. Assuming various limb-darkening laws, we generated best-fitting models and redetermined the parameters of the system. Error estimates were derived by the prayer-bead method and Monte Carlo simulations. Results: System parameters obtained by us are found to agree with previous studies within one sigma. Use of the non-linear limb-darkening laws results in the best-fitting models. With two new mid-transit times, the ephemeris was refined to BJDTDB = (2 454 508.97682 ± 0.00020) + (1.09142245 ± 0.00000033)E. Interestingly, indications of transit timing variation are detected at the level of 3.4 sigma. This signal can be induced by an additional planet in the system. Simplified numerical simulations show that a perturber could be a terrestrial-type planet if both planets are in a low-order orbital resonance. However, we emphasise that further observations are needed to confirm variation and to constrain properties of the perturber. Based on observations collected at the Centro Astronómico Hispano Alemán (CAHA), operated jointly by the Max-Planck Institut für Astronomie and the Instituto de Astrofisica de Andalucia (CSIC).Photometric data are only available in electronic form at the CDS via anonymous ftp to cdsarc.u-strasbg.fr (130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/528/A65

  17. Thermal Phase Variations of WASP-12b with Warm Spitzer

    NASA Astrophysics Data System (ADS)

    Cowan, N. B.

    2011-12-01

    The short-period planet WASP-12b is among the hottest known transiting planets. Space- and ground-based secondary eclipse depths imply that this planet has a C/O ratio greater than 1 (Madhusudhan et al. 2011), in stark contrast to the chemistry in the Solar System and the assumed chemistry of other planets. These same eclipse data put the planet's day-side effective temperature at ~3000 K. This indicates a low albedo and poor recirculation of heat to the night-side, as has been found for all of the hottest transiting giant planets (Cowan & Agol 2011). But these trends were based solely on day-side observations (eclipse depths) rather than full phase variations, which directly probe night-side temperature. The short period (1.1 day) and inflated radius (1.8 R_J) of WASP-12b has led to speculation that the planet is severely prolate in shape, and undergoing Roche-lobe overflow (Li et al. 2010, Lai et al. 2010). UV observations by Fossati et al. (2010) seem to support this idea. We have recently obtained thermal phase curves of this planet with Warm Spitzer (PI:Machalek; PID 70060). Our data include two eclipses, a transit, and full phase coverage at each of 3.6 and 4.5 micron. Because of the planet's high temperature and large size, this is one of the highest S/N phase curves yet obtained with Spitzer. These data allow us to directly measure the planet's night-side temperature and the longitudinal offset of its day-side hot-spot, as well as constrain the planet's shape. Since the 3.6 and 4.5 micron bands probe different depths in the atmosphere, we will strongly constrain climate models for the hottest gas giants.

  18. A novel method involving Matlab coding to determine the distribution of a collimated ionizing radiation beam

    NASA Astrophysics Data System (ADS)

    Ioan, M.-R.

    2016-08-01

    In ionizing radiation related experiments, precisely knowing of the involved parameters it is a very important task. Some of these experiments are involving the use of electromagnetic ionizing radiation such are gamma rays and X rays, others make use of energetic charged or not charged small dimensions particles such are protons, electrons, neutrons and even, in other cases, larger accelerated particles such are helium or deuterium nuclei are used. In all these cases the beam used to hit an exposed target must be previously collimated and precisely characterized. In this paper, a novel method to determine the distribution of the collimated beam involving Matlab coding is proposed. The method was implemented by using of some Pyrex glass test samples placed in the beam where its distribution and dimension must be determined, followed by taking high quality pictures of them and then by digital processing the resulted images. By this method, information regarding the doses absorbed in the exposed samples volume are obtained too.

  19. 3-D model-based frame interpolation for distributed video coding of static scenes.

    PubMed

    Maitre, Matthieu; Guillemot, Christine; Morin, Luce

    2007-05-01

    This paper addresses the problem of side information extraction for distributed coding of videos captured by a camera moving in a 3-D static environment. Examples of targeted applications are augmented reality, remote-controlled robots operating in hazardous environments, or remote exploration by drones. It explores the benefits of the structure-from-motion paradigm for distributed coding of this type of video content. Two interpolation methods constrained by the scene geometry, based either on block matching along epipolar lines or on 3-D mesh fitting, are first developed. These techniques are based on a robust algorithm for sub-pel matching of feature points, which leads to semi-dense correspondences between key frames. However, their rate-distortion (RD) performances are limited by misalignments between the side information and the actual Wyner-Ziv (WZ) frames due to the assumption of linear motion between key frames. To cope with this problem, two feature point tracking techniques are introduced, which recover the camera parameters of the WZ frames. A first technique, in which the frames remain encoded separately, performs tracking at the decoder and leads to significant RD performance gains. A second technique further improves the RD performances by allowing a limited tracking at the encoder. As an additional benefit, statistics on tracks allow the encoder to adapt the key frame frequency to the video motion content. PMID:17491456

  20. Prioritized Degree Distribution in Wireless Sensor Networks with a Network Coded Data Collection Method

    PubMed Central

    Wan, Jan; Xiong, Naixue; Zhang, Wei; Zhang, Qinchao; Wan, Zheng

    2012-01-01

    The reliability of wireless sensor networks (WSNs) can be greatly affected by failures of sensor nodes due to energy exhaustion or the influence of brutal external environment conditions. Such failures seriously affect the data persistence and collection efficiency. Strategies based on network coding technology for WSNs such as LTCDS can improve the data persistence without mass redundancy. However, due to the bad intermediate performance of LTCDS, a serious ‘cliff effect’ may appear during the decoding period, and source data are hard to recover from sink nodes before sufficient encoded packets are collected. In this paper, the influence of coding degree distribution strategy on the ‘cliff effect’ is observed and the prioritized data storage and dissemination algorithm PLTD-ALPHA is presented to achieve better data persistence and recovering performance. With PLTD-ALPHA, the data in sensor network nodes present a trend that their degree distribution increases along with the degree level predefined, and the persistent data packets can be submitted to the sink node according to its degree in order. Finally, the performance of PLTD-ALPHA is evaluated and experiment results show that PLTD-ALPHA can greatly improve the data collection performance and decoding efficiency, while data persistence is not notably affected. PMID:23235451

  1. Association Study of IL-12B Polymorphisms Susceptibility with Ankylosing Spondylitis in Mainland Han Population

    PubMed Central

    Liu, Li; Yang, Ting; Ding, Ning; Hu, Yanting; Cai, Guoqi; Wang, Li; Xin, Lihong; Xia, Qing; Li, Xiaona; Xu, Shengqian; Xu, Jianhua; Yang, Xiao; Zou, Yanfeng; Pan, Faming

    2015-01-01

    Objective This study aims to determine whether the genetic polymorphisms of IL-12B gene is a susceptibility factor to Ankylosing spondylitis (AS) in mainland Han Chinese population. Method Eight single-nucleotide polymorphisms (SNPs) (rs10045431, rs11167764, rs3212227, rs6556412, rs6556416, rs6871626, rs6887695 and rs7709212) in the IL-12B gene were genotyped by iMLDR Assay technology in 400 patients [96% (384/400) HLA-B27(+)] and 395 geographically and ethnically matched healthy controls in mainland Han Chinese population. The correlation between IL-12B genetic polymorphisms and AS activity index (BASDAI, BASFI) were tested. Results The significant difference was found in genotype distribution between AS and healthy controls (χ2 = 6.942, P-value = 0.031) of the SNP rs6871626. Furthermore, significant evidence was also detected under the recessive model for minor allele A. The AA genotype carrier had 1.830 fold risk compared with C allele carrier (with CC and AC genotypes) [OR (95% CI) = 1.830 (1.131-2.961), P-value = 0.014]. Nevertheless, the difference was no longer significant after Bonferroni correction. Subset analysis on cases with HLA-B27(+) did find the same results. Three genotypic groups (AA, CC and CA) in rs6871626 site was highly associated with the BASDAI and BASFI (P-value = 0.012 and P-value = 0.023, respectively), after adjustment for effect of age, sex, and disease duration, the P-value was 0.031 and 0.041, respectively. The AA genotype of rs6871626 was also significantly correlated with an increased BASDAI and BASFI compared to the AC and CC genotypes in AS patients. Conclusion Our findings suggest that rs6871626 may be associated AS susceptibility and with disease activity (BASDAI, BASFI) in mainland Han Chinese population. PMID:26103568

  2. 17 CFR 240.12b-5 - Determination of affiliates of banks.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... banks. 240.12b-5 Section 240.12b-5 Commodity and Securities Exchanges SECURITIES AND EXCHANGE COMMISSION... Securities Exchange Act of 1934 General § 240.12b-5 Determination of affiliates of banks. In determining whether a person is an “affiliate” or “parent” of a bank or whether a bank is a “subsidiary” or...

  3. 17 CFR 240.12b-5 - Determination of affiliates of banks.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... banks. 240.12b-5 Section 240.12b-5 Commodity and Securities Exchanges SECURITIES AND EXCHANGE COMMISSION... Securities Exchange Act of 1934 General § 240.12b-5 Determination of affiliates of banks. In determining whether a person is an “affiliate” or “parent” of a bank or whether a bank is a “subsidiary” or...

  4. 17 CFR 240.12b-37 - Satisfaction of filing requirements.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 17 Commodity and Securities Exchanges 3 2010-04-01 2010-04-01 false Satisfaction of filing requirements. 240.12b-37 Section 240.12b-37 Commodity and Securities Exchanges SECURITIES AND EXCHANGE... Under the Securities Exchange Act of 1934 Special Provisions § 240.12b-37 Satisfaction of...

  5. 17 CFR 240.12b-5 - Determination of affiliates of banks.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... banks. 240.12b-5 Section 240.12b-5 Commodity and Securities Exchanges SECURITIES AND EXCHANGE COMMISSION... Securities Exchange Act of 1934 General § 240.12b-5 Determination of affiliates of banks. In determining whether a person is an “affiliate” or “parent” of a bank or whether a bank is a “subsidiary” or...

  6. Monte Carlo N Particle code - Dose distribution of clinical electron beams in inhomogeneous phantoms

    PubMed Central

    Nedaie, H. A.; Mosleh-Shirazi, M. A.; Allahverdi, M.

    2013-01-01

    Electron dose distributions calculated using the currently available analytical methods can be associated with large uncertainties. The Monte Carlo method is the most accurate method for dose calculation in electron beams. Most of the clinical electron beam simulation studies have been performed using non- MCNP [Monte Carlo N Particle] codes. Given the differences between Monte Carlo codes, this work aims to evaluate the accuracy of MCNP4C-simulated electron dose distributions in a homogenous phantom and around inhomogeneities. Different types of phantoms ranging in complexity were used; namely, a homogeneous water phantom and phantoms made of polymethyl methacrylate slabs containing different-sized, low- and high-density inserts of heterogeneous materials. Electron beams with 8 and 15 MeV nominal energy generated by an Elekta Synergy linear accelerator were investigated. Measurements were performed for a 10 cm × 10 cm applicator at a source-to-surface distance of 100 cm. Individual parts of the beam-defining system were introduced into the simulation one at a time in order to show their effect on depth doses. In contrast to the first scattering foil, the secondary scattering foil, X and Y jaws and applicator provide up to 5% of the dose. A 2%/2 mm agreement between MCNP and measurements was found in the homogenous phantom, and in the presence of heterogeneities in the range of 1-3%, being generally within 2% of the measurements for both energies in a "complex" phantom. A full-component simulation is necessary in order to obtain a realistic model of the beam. The MCNP4C results agree well with the measured electron dose distributions. PMID:23533162

  7. Monte Carlo N Particle code - Dose distribution of clinical electron beams in inhomogeneous phantoms.

    PubMed

    Nedaie, H A; Mosleh-Shirazi, M A; Allahverdi, M

    2013-01-01

    Electron dose distributions calculated using the currently available analytical methods can be associated with large uncertainties. The Monte Carlo method is the most accurate method for dose calculation in electron beams. Most of the clinical electron beam simulation studies have been performed using non- MCNP [Monte Carlo N Particle] codes. Given the differences between Monte Carlo codes, this work aims to evaluate the accuracy of MCNP4C-simulated electron dose distributions in a homogenous phantom and around inhomogeneities. Different types of phantoms ranging in complexity were used; namely, a homogeneous water phantom and phantoms made of polymethyl methacrylate slabs containing different-sized, low- and high-density inserts of heterogeneous materials. Electron beams with 8 and 15 MeV nominal energy generated by an Elekta Synergy linear accelerator were investigated. Measurements were performed for a 10 cm × 10 cm applicator at a source-to-surface distance of 100 cm. Individual parts of the beam-defining system were introduced into the simulation one at a time in order to show their effect on depth doses. In contrast to the first scattering foil, the secondary scattering foil, X and Y jaws and applicator provide up to 5% of the dose. A 2%/2 mm agreement between MCNP and measurements was found in the homogenous phantom, and in the presence of heterogeneities in the range of 1-3%, being generally within 2% of the measurements for both energies in a "complex" phantom. A full-component simulation is necessary in order to obtain a realistic model of the beam. The MCNP4C results agree well with the measured electron dose distributions. PMID:23533162

  8. Inter-bit prediction based on maximum likelihood estimate for distributed video coding

    NASA Astrophysics Data System (ADS)

    Klepko, Robert; Wang, Demin; Huchet, Grégory

    2010-01-01

    Distributed Video Coding (DVC) is an emerging video coding paradigm for the systems that require low complexity encoders supported by high complexity decoders. A typical real world application for a DVC system is mobile phones with video capture hardware that have a limited encoding capability supported by base-stations with a high decoding capability. Generally speaking, a DVC system operates by dividing a source image sequence into two streams, key frames and Wyner-Ziv (W) frames, with the key frames being used to represent the source plus an approximation to the W frames called S frames (where S stands for side information), while the W frames are used to correct the bit errors in the S frames. This paper presents an effective algorithm to reduce the bit errors in the side information of a DVC system. The algorithm is based on the maximum likelihood estimation to help predict future bits to be decoded. The reduction in bit errors in turn reduces the number of parity bits needed for error correction. Thus, a higher coding efficiency is achieved since fewer parity bits need to be transmitted from the encoder to the decoder. The algorithm is called inter-bit prediction because it predicts the bit-plane to be decoded from previously decoded bit-planes, one bitplane at a time, starting from the most significant bit-plane. Results provided from experiments using real-world image sequences show that the inter-bit prediction algorithm does indeed reduce the bit rate by up to 13% for our test sequences. This bit rate reduction corresponds to a PSNR gain of about 1.6 dB for the W frames.

  9. Proof-of-principle experiment of reference-frame-independent quantum key distribution with phase coding

    PubMed Central

    Liang, Wen-Ye; Wang, Shuang; Li, Hong-Wei; Yin, Zhen-Qiang; Chen, Wei; Yao, Yao; Huang, Jing-Zheng; Guo, Guang-Can; Han, Zheng-Fu

    2014-01-01

    We have demonstrated a proof-of-principle experiment of reference-frame-independent phase coding quantum key distribution (RFI-QKD) over an 80-km optical fiber. After considering the finite-key bound, we still achieve a distance of 50 km. In this scenario, the phases of the basis states are related by a slowly time-varying transformation. Furthermore, we developed and realized a new decoy state method for RFI-QKD systems with weak coherent sources to counteract the photon-number-splitting attack. With the help of a reference-frame-independent protocol and a Michelson interferometer with Faraday rotator mirrors, our system is rendered immune to the slow phase changes of the interferometer and the polarization disturbances of the channel, making the procedure very robust. PMID:24402550

  10. Photoplus: auxiliary information for printed images based on distributed source coding

    NASA Astrophysics Data System (ADS)

    Samadani, Ramin; Mukherjee, Debargha

    2008-01-01

    A printed photograph is difficult to reuse because the digital information that generated the print may no longer be available. This paper describes a mechanism for approximating the original digital image by combining a scan of the printed photograph with small amounts of digital auxiliary information kept together with the print. The auxiliary information consists of a small amount of digital data to enable accurate registration and color-reproduction, followed by a larger amount of digital data to recover residual errors and lost frequencies by distributed Wyner-Ziv coding techniques. Approximating the original digital image enables many uses, including making good quality reprints from the original print, even when they are faded many years later. In essence, the print itself becomes the currency for archiving and repurposing digital images, without requiring computer infrastructure.

  11. A versatile palindromic amphipathic repeat coding sequence horizontally distributed among diverse bacterial and eucaryotic microbes

    PubMed Central

    2010-01-01

    HGT and intra-genomic shuffling. Conclusions We describe novel features of PARCELs (Palindromic Amphipathic Repeat Coding ELements), a set of widely distributed repeat protein domains and coding sequences that were likely acquired through HGT by diverse unicellular microbes, further mobilized and diversified within genomes, and co-opted for expression in the membrane proteome of some taxa. Disseminated by multiple gene-centric vehicles, ORFs harboring these elements enhance accessory gene pools as part of the "mobilome" connecting genomes of various clades, in taxa sharing common niches. PMID:20626840

  12. A technique for importing an arbitrary distribution of mass and magnetic field from an MHD code into a PIC code.

    NASA Astrophysics Data System (ADS)

    Swanekamp, S. B.; Oliver, B. V.; Grossmann, J. M.; Smithe, D.; Ludeking, L.

    1996-11-01

    The current understanding of plasma opening switch (POS) operation is as follows. During the conduction phase the switch plasma is redistributed by MHD forces. This redistribution of mass leads to the formation of a low density region in the switch where a 1-3 mm gap in the plasma is believed to form as the switch opens and magnetic energy is transferred between the primary storage inductor and the load. The processes of gap formation and power delivery are not very well understood. It is generally accepted that the assumptions of MHD theory are not valid during the gap formation and power delivery processes because electron inertia and the lack of space-charge neutrality are expected to play a key role. To study non-MHD processes during the gap formation process and power delivery phase of the POS, we have developed a technique for importing an arbitrary state of an MHD code into the PIC code MAGIC. At present the plasma kinetic pressure is ignored during the initialization of particles. Work supported by Defense Nuclear Agency. ^ JAYCOR, Vienna, VA 22102. ^ NRL-NRC Research Associate.

  13. HSPA12B inhibits lipopolysaccharide-induced inflammatory response in human umbilical vein endothelial cells

    PubMed Central

    Wu, Jun; Li, Xuehan; Huang, Lei; Jiang, Surong; Tu, Fei; Zhang, Xiaojin; Ma, He; Li, Rongrong; Li, Chuanfu; Li, Yuehua; Ding, Zhengnian; Liu, Li

    2015-01-01

    Heat shock protein A12B (HSPA12B) is a newly discovered member of the HSP70 protein family. This study investigated the effects of HSPA12B on lipopolysaccharide (LPS)-induced inflammatory responses in human umbilical vein endothelial cells (HUVECs) and the possible mechanisms involved. A HUVECs inflammatory model was induced by LPS. Overexpression of HSPA12B in HUVECs was achieved by infection with recombinant adenoviruses encoding green fluorescence protein-HSPA12B. Knockdown of HSPA12B was achieved by siRNA technique. Twenty four hours after virus infection or siRNA transfection, HUVECs were stimulated with 1 μg/ml LPS for 4 hrs. Endothelial cell permeability ability was determined by transwell permeability assay. The binding rate of human neutrophilic polymorphonuclear leucocytes (PMN) with HUVECs was examined using myeloperoxidase assay. Cell migrating ability was determined by the wound-healing assay. The mRNA and protein expression levels of interested genes were analyzed by RT-qPCR and Western blot, respectively. The release of cytokines interleukin-6 and tumour necrosis factor-α was measured by ELISA. HSPA12B suppressed LPS-induced HUVEC permeability and reduced PMN adhesion to HUVECs. HSPA12B also inhibited LPS-induced up-regulation of adhesion molecules and inflammatory cytokine expression. By contrast, knockdown of HSPA12B enhanced LPS-induced increases in the expression of adhesion molecules and inflammatory cytokines. Moreover, HSPA12B activated PI3K/Akt signalling pathway and pharmacological inhibition of this pathway by Wortmannin completely abrogated the protection of HSPA12B against inflammatory response in HUVECs. Our results suggest that HSPA12B attenuates LPS-induced inflammatory responses in HUVECs via activation of PI3K/Akt signalling pathway. PMID:25545050

  14. Reduction and alkaline hydrolysis of 5-oxoindeno(1,2-b)pyridinium salts

    SciTech Connect

    Mutsenietse, D.Kh.; Zandersons, A.Z.; Lusis, V.K.; Dubur, G.Ya.

    1987-07-01

    5,9b-dihydro derivatives of indeno(1,2-b)pyridine were obtained by the reduction of the corresponding 1,2-dimethyl-4-acryl-5-oxoindeno(1,2-b)pyridinium perchlorates. 1,2-dimethyl-3-ethoxycarbonyl-4-phenyl-5-oxoindeno(1,2-b)pyridinium perchlorate forms in alkaline medium with splitting, recyclization and deamination products.

  15. The Monte Carlo SRNA-VOX code for 3D proton dose distribution in voxelized geometry using CT data

    NASA Astrophysics Data System (ADS)

    Ilic, Radovan D.; Spasic-Jokic, Vesna; Belicev, Petar; Dragovic, Milos

    2005-03-01

    This paper describes the application of the SRNA Monte Carlo package for proton transport simulations in complex geometry and different material compositions. The SRNA package was developed for 3D dose distribution calculation in proton therapy and dosimetry and it was based on the theory of multiple scattering. The decay of proton induced compound nuclei was simulated by the Russian MSDM model and our own using ICRU 63 data. The developed package consists of two codes: the SRNA-2KG, which simulates proton transport in combinatorial geometry and the SRNA-VOX, which uses the voxelized geometry using the CT data and conversion of the Hounsfield's data to tissue elemental composition. Transition probabilities for both codes are prepared by the SRNADAT code. The simulation of the proton beam characterization by multi-layer Faraday cup, spatial distribution of positron emitters obtained by the SRNA-2KG code and intercomparison of computational codes in radiation dosimetry, indicate immediate application of the Monte Carlo techniques in clinical practice. In this paper, we briefly present the physical model implemented in the SRNA package, the ISTAR proton dose planning software, as well as the results of the numerical experiments with proton beams to obtain 3D dose distribution in the eye and breast tumour.

  16. The Monte Carlo SRNA-VOX code for 3D proton dose distribution in voxelized geometry using CT data.

    PubMed

    Ilić, Radovan D; Spasić-Jokić, Vesna; Belicev, Petar; Dragović, Milos

    2005-03-01

    This paper describes the application of the SRNA Monte Carlo package for proton transport simulations in complex geometry and different material compositions. The SRNA package was developed for 3D dose distribution calculation in proton therapy and dosimetry and it was based on the theory of multiple scattering. The decay of proton induced compound nuclei was simulated by the Russian MSDM model and our own using ICRU 63 data. The developed package consists of two codes: the SRNA-2KG, which simulates proton transport in combinatorial geometry and the SRNA-VOX, which uses the voxelized geometry using the CT data and conversion of the Hounsfield's data to tissue elemental composition. Transition probabilities for both codes are prepared by the SRNADAT code. The simulation of the proton beam characterization by multi-layer Faraday cup, spatial distribution of positron emitters obtained by the SRNA-2KG code and intercomparison of computational codes in radiation dosimetry, indicate immediate application of the Monte Carlo techniques in clinical practice. In this paper, we briefly present the physical model implemented in the SRNA package, the ISTAR proton dose planning software, as well as the results of the numerical experiments with proton beams to obtain 3D dose distribution in the eye and breast tumour. PMID:15798273

  17. On distributed memory MPI-based parallelization of SPH codes in massive HPC context

    NASA Astrophysics Data System (ADS)

    Oger, G.; Le Touzé, D.; Guibert, D.; de Leffe, M.; Biddiscombe, J.; Soumagne, J.; Piccinali, J.-G.

    2016-03-01

    Most of particle methods share the problem of high computational cost and in order to satisfy the demands of solvers, currently available hardware technologies must be fully exploited. Two complementary technologies are now accessible. On the one hand, CPUs which can be structured into a multi-node framework, allowing massive data exchanges through a high speed network. In this case, each node is usually comprised of several cores available to perform multithreaded computations. On the other hand, GPUs which are derived from the graphics computing technologies, able to perform highly multi-threaded calculations with hundreds of independent threads connected together through a common shared memory. This paper is primarily dedicated to the distributed memory parallelization of particle methods, targeting several thousands of CPU cores. The experience gained clearly shows that parallelizing a particle-based code on moderate numbers of cores can easily lead to an acceptable scalability, whilst a scalable speedup on thousands of cores is much more difficult to obtain. The discussion revolves around speeding up particle methods as a whole, in a massive HPC context by making use of the MPI library. We focus on one particular particle method which is Smoothed Particle Hydrodynamics (SPH), one of the most widespread today in the literature as well as in engineering.

  18. Performance Modeling and Measurement of Parallelized Code for Distributed Shared Memory Multiprocessors

    NASA Technical Reports Server (NTRS)

    Waheed, Abdul; Yan, Jerry

    1998-01-01

    This paper presents a model to evaluate the performance and overhead of parallelizing sequential code using compiler directives for multiprocessing on distributed shared memory (DSM) systems. With increasing popularity of shared address space architectures, it is essential to understand their performance impact on programs that benefit from shared memory multiprocessing. We present a simple model to characterize the performance of programs that are parallelized using compiler directives for shared memory multiprocessing. We parallelized the sequential implementation of NAS benchmarks using native Fortran77 compiler directives for an Origin2000, which is a DSM system based on a cache-coherent Non Uniform Memory Access (ccNUMA) architecture. We report measurement based performance of these parallelized benchmarks from four perspectives: efficacy of parallelization process; scalability; parallelization overhead; and comparison with hand-parallelized and -optimized version of the same benchmarks. Our results indicate that sequential programs can conveniently be parallelized for DSM systems using compiler directives but realizing performance gains as predicted by the performance model depends primarily on minimizing architecture-specific data locality overhead.

  19. Entanglement distribution over quantum code-division multiple-access networks

    NASA Astrophysics Data System (ADS)

    Zhu, Chang-long; Yang, Nan; Liu, Yu-xi; Nori, Franco; Zhang, Jing

    2015-10-01

    We present a method for quantum entanglement distribution over a so-called code-division multiple-access network, in which two pairs of users share the same quantum channel to transmit information. The main idea of this method is to use different broadband chaotic phase shifts, generated by electro-optic modulators and chaotic Colpitts circuits, to encode the information-bearing quantum signals coming from different users and then recover the masked quantum signals at the receiver side by imposing opposite chaotic phase shifts. The chaotic phase shifts given to different pairs of users are almost uncorrelated due to the randomness of chaos and thus the quantum signals from different pair of users can be distinguished even when they are sent via the same quantum channel. It is shown that two maximally entangled states can be generated between two pairs of users by our method mediated by bright coherent lights, which can be more easily implemented in experiments compared with single-photon lights. Our method is robust under the channel noises if only the decay rates of the information-bearing fields induced by the channel noises are not quite high. Our study opens up new perspectives for addressing and transmitting quantum information in future quantum networks.

  20. The spatial distribution of fixed mutations within genes coding for proteins

    NASA Technical Reports Server (NTRS)

    Holmquist, R.; Goodman, M.; Conroy, T.; Czelusniak, J.

    1983-01-01

    An examination has been conducted of the extensive amino acid sequence data now available for five protein families - the alpha crystallin A chain, myoglobin, alpha and beta hemoglobin, and the cytochromes c - with the goal of estimating the true spatial distribution of base substitutions within genes that code for proteins. In every case the commonly used Poisson density failed to even approximate the experimental pattern of base substitution. For the 87 species of beta hemoglobin examined, for example, the probability that the observed results were from a Poisson process was the minuscule 10 to the -44th. Analogous results were obtained for the other functional families. All the data were reasonably, but not perfectly, described by the negative binomial density. In particular, most of the data were described by one of the very simple limiting forms of this density, the geometric density. The implications of this for evolutionary inference are discussed. It is evident that most estimates of total base substitutions between genes are badly in need of revision.

  1. TNF, IL12B, and IFNG Gene Polymorphisms in Serbian Patients with Psoriasis

    PubMed Central

    Popadic, Svetlana; Savic, Emina; Markovic, Milos; Ramic, Zorica; Medenica, Ljiljana; Pravica, Vera; Spuran, Zorica; Trajkovic, Vladimir

    2015-01-01

    Background Psoriasis is a common chronic inflammatory skin disease with a strong genetic basis. Cytokines such as tumor necrosis factor alpha (TNF-α), interleukins (ILs) such are IL-12 and IL-23, and interferon gamma (IFN-γ) are released from various inflammatory and resident cells, and have been implicated in the initiation/maintenance of inflammation. Certain alleles of the aforementioned cytokines may be associated with disease susceptibility/severity. Objective To investigate the association of three common functional gene polymorphisms, namely TNF -308 G/A (rs1800629), IL12B (encoding the p40 subunit of IL-12/23) +1188 A/C (rs3212227), and IFNG +874 T/A (rs2430561) with psoriasis development and severity in Serbian patients. Methods We genotyped 130 patients with psoriasis (26 of whom also had psoriatic arthritis) and 259 controls; rs1800629 and rs3212227, and rs2430561, by real-time PCR assay. Results The TNF GG genotype was detected at a higher frequency in patients with psoriasis compared to control subjects (OR, 1.420; 95% CI, 0.870~2.403) without statistical significance (p=0.191). Lack of the TNF G allele was associated with lower psoriasis severity (p=0.007). The IL12B AC genotype was underrepresented in the patients with psoriatic arthritis compared to healthy subjects (OR, 0.308; 95% CI, 0.090~1.057; p=0.049). The distribution of the rs2430561 allele and genotype frequencies was similar between patients with psoriasis and controls. Conclusion Our study demonstrates an effect of the rs1800629 on psoriasis severity, and a marginal impact of the rs3212227 on susceptibility to psoriatic arthritis. Collectively, our results obtained in a Serbian cohort expand current knowledge regarding individual predisposition to psoriatic disease. PMID:25834350

  2. 17 CFR 240.12b-12 - Requirements as to paper, printing and language.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ..., if the filing is an HTML document, as defined in Regulation S-T Rule 11 (17 CFR 232.11). (e) Where a..., printing and language. 240.12b-12 Section 240.12b-12 Commodity and Securities Exchanges SECURITIES AND... paper, printing and language. (a) Statements and reports shall be filed on good quality, unglazed...

  3. 17 CFR 210.12-12B - Open option contracts written.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 17 Commodity and Securities Exchanges 3 2014-04-01 2014-04-01 false Open option contracts written. 210.12-12B Section 210.12-12B Commodity and Securities Exchanges SECURITIES AND EXCHANGE COMMISSION FORM AND CONTENT OF AND REQUIREMENTS FOR FINANCIAL STATEMENTS, SECURITIES ACT OF 1933, SECURITIES EXCHANGE ACT OF 1934, INVESTMENT COMPANY ACT...

  4. DOUBLE MAGAZINE LOCATED BETWEEN MAGAZINES B12 & B13. FRONT ELEVATION ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    DOUBLE MAGAZINE LOCATED BETWEEN MAGAZINES B-12 & B-13. FRONT ELEVATION WITH RANGE POLE. - Naval Magazine Lualualei, Waikele Branch, Tunnel Magazine Type, Waikakalaua & Kipapa Gulches, Pearl City, Honolulu County, HI

  5. DOUBLE MAGAZINE LOCATED BETWEEN MAGAZINES B12 & B13. VIEW FROM ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    DOUBLE MAGAZINE LOCATED BETWEEN MAGAZINES B-12 & B-13. VIEW FROM LEFT SIDE. - Naval Magazine Lualualei, Waikele Branch, Tunnel Magazine Type, Waikakalaua & Kipapa Gulches, Pearl City, Honolulu County, HI

  6. DOUBLE MAGAZINE LOCATED BETWEEN MAGAZINES B12 & B13. VIEW FROM ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    DOUBLE MAGAZINE LOCATED BETWEEN MAGAZINES B-12 & B-13. VIEW FROM RIGHT SIDE SHOWING GUARD TOWER S83 ON RIDGE BEHIND MAGAZINE. - Naval Magazine Lualualei, Waikele Branch, Tunnel Magazine Type, Waikakalaua & Kipapa Gulches, Pearl City, Honolulu County, HI

  7. THE SUB-SATURN MASS TRANSITING PLANET HAT-P-12b

    SciTech Connect

    Lee, Jae Woo; Youn, Jae-Hyuck; Kim, Seung-Lee; Lee, Chung-Uk; Hinse, Tobias Cornelius E-mail: jhyoon@kasi.re.kr E-mail: leecu@kasi.re.kr

    2012-04-15

    We present new photometric data of the transiting planet HAT-P-12b observed in 2011. Our three transit curves are modeled using the JKTEBOP code and adopting the quadratic limb-darkening law. Including our measurements, 18 transit times spanning about 4.2 yr were used to determine the improved ephemeris with a transit epoch of 2,454,187.85560 {+-} 0.00011 BJD and an orbital period of 3.21305961 {+-} 0.00000035 days. The physical properties of the star-planet system are computed using empirical calibrations from eclipsing binary stars and stellar evolutionary models, combined with both our transit parameters and previously known spectroscopic results. We found that the absolute dimensions of the host star are M{sub A} = 0.73 {+-} 0.02 M{sub Sun }, R{sub A} = 0.70 {+-} 0.01 R{sub Sun }, log g{sub A} = 4.61 {+-} 0.02, {rho}{sub A} = 2.10 {+-} 0.09 {rho}{sub Sun }, and L{sub A} = 0.21 {+-} 0.01 L{sub Sun }. The planetary companion has M{sub b} = 0.21 {+-} 0.01 M{sub Jup}, R{sub b} = 0.94 {+-} 0.01 R{sub Jup}, log g{sub b} = 2.77 {+-} 0.02, {rho}{sub b} = 0.24 {+-} 0.01 {rho}{sub Jup}, and T{sub eq} = 960 {+-} 14 K. Our results agree well with standard models of irradiated gas giants with a core mass of 11.3 M{sub Circled-Plus }.

  8. Applying a Hydrodynamical Treatment of Stream Flow and Accretion Disk Formation in WASP-12/b Exoplanetary System

    NASA Astrophysics Data System (ADS)

    Weaver, Ian; Lopez, Aaron; Macias, Phil

    2016-01-01

    WASP-12b is a hot Jupiter orbiting dangerously close to its parent star WASP-12 at a radius 1/44th the distance between the Earth and the Sun, or roughly 16 times closer than Mercury. WASP-12's gravitational influence at this incredibly close proximity generates tidal forces on WASP-12b that distort the planet into an egg-like shape. As a result, the planet's surface overflows its Roche lobe through L1, transferring mass to the host star at a rate of 270 million metric tonnes per second. This mass transferring stream forms an accretion disk that transits the parent star, which aids sensitive instruments, such as the Kepler spacecraft, whose role is to examine the periodic dimming of main sequence stars in order to detect ones with orbiting planets. The quasi-ballistic stream trajectory is approximated by that of a massless point particle released from analogous initial conditions in 2D. The particle dynamics are shown to deviate negligibly across a broad range of initial conditions, indicating applicability of our model to "WASP-like" systems in general. We then apply a comprehensive fluid treatment by way of hydrodynamical code FLASH in order to directly model the behavior of mass transfer in a non-inertial reference frame and subsequent disk formation. We hope to employ this model to generate virtual spectroscopic signatures and compare them against collected light curve data from the Hubble Space Telescope's Cosmic Origins Spectrograph (COS).

  9. Purifying selection shapes the coincident SNP distribution of primate coding sequences.

    PubMed

    Chen, Chia-Ying; Hung, Li-Yuan; Wu, Chan-Shuo; Chuang, Trees-Juen

    2016-01-01

    Genome-wide analysis has observed an excess of coincident single nucleotide polymorphisms (coSNPs) at human-chimpanzee orthologous positions, and suggested that this is due to cryptic variation in the mutation rate. While this phenomenon primarily corresponds with non-coding coSNPs, the situation in coding sequences remains unclear. Here we calculate the observed-to-expected ratio of coSNPs (coSNPO/E) to estimate the prevalence of human-chimpanzee coSNPs, and show that the excess of coSNPs is also present in coding regions. Intriguingly, coSNPO/E is much higher at zero-fold than at nonzero-fold degenerate sites; such a difference is due to an elevation of coSNPO/E at zero-fold degenerate sites, rather than a reduction at nonzero-fold degenerate ones. These trends are independent of chimpanzee subpopulation, population size, or sequencing techniques; and hold in broad generality across primates. We find that this discrepancy cannot fully explained by sequence contexts, shared ancestral polymorphisms, SNP density, and recombination rate, and that coSNPO/E in coding sequences is significantly influenced by purifying selection. We also show that selection and mutation rate affect coSNPO/E independently, and coSNPs tend to be less damaging and more correlated with human diseases than non-coSNPs. These suggest that coSNPs may represent a "signature" during primate protein evolution. PMID:27255481

  10. Purifying selection shapes the coincident SNP distribution of primate coding sequences

    PubMed Central

    Chen, Chia-Ying; Hung, Li-Yuan; Wu, Chan-Shuo; Chuang, Trees-Juen

    2016-01-01

    Genome-wide analysis has observed an excess of coincident single nucleotide polymorphisms (coSNPs) at human-chimpanzee orthologous positions, and suggested that this is due to cryptic variation in the mutation rate. While this phenomenon primarily corresponds with non-coding coSNPs, the situation in coding sequences remains unclear. Here we calculate the observed-to-expected ratio of coSNPs (coSNPO/E) to estimate the prevalence of human-chimpanzee coSNPs, and show that the excess of coSNPs is also present in coding regions. Intriguingly, coSNPO/E is much higher at zero-fold than at nonzero-fold degenerate sites; such a difference is due to an elevation of coSNPO/E at zero-fold degenerate sites, rather than a reduction at nonzero-fold degenerate ones. These trends are independent of chimpanzee subpopulation, population size, or sequencing techniques; and hold in broad generality across primates. We find that this discrepancy cannot fully explained by sequence contexts, shared ancestral polymorphisms, SNP density, and recombination rate, and that coSNPO/E in coding sequences is significantly influenced by purifying selection. We also show that selection and mutation rate affect coSNPO/E independently, and coSNPs tend to be less damaging and more correlated with human diseases than non-coSNPs. These suggest that coSNPs may represent a “signature” during primate protein evolution. PMID:27255481

  11. Surveying Multidisciplinary Aspects in Real-Time Distributed Coding for Wireless Sensor Networks

    PubMed Central

    Braccini, Carlo; Davoli, Franco; Marchese, Mario; Mongelli, Maurizio

    2015-01-01

    Wireless Sensor Networks (WSNs), where a multiplicity of sensors observe a physical phenomenon and transmit their measurements to one or more sinks, pertain to the class of multi-terminal source and channel coding problems of Information Theory. In this category, “real-time” coding is often encountered for WSNs, referring to the problem of finding the minimum distortion (according to a given measure), under transmission power constraints, attainable by encoding and decoding functions, with stringent limits on delay and complexity. On the other hand, the Decision Theory approach seeks to determine the optimal coding/decoding strategies or some of their structural properties. Since encoder(s) and decoder(s) possess different information, though sharing a common goal, the setting here is that of Team Decision Theory. A more pragmatic vision rooted in Signal Processing consists of fixing the form of the coding strategies (e.g., to linear functions) and, consequently, finding the corresponding optimal decoding strategies and the achievable distortion, generally by applying parametric optimization techniques. All approaches have a long history of past investigations and recent results. The goal of the present paper is to provide the taxonomy of the various formulations, a survey of the vast related literature, examples from the authors' own research, and some highlights on the inter-play of the different theories. PMID:25633597

  12. Application of Golay codes to distributed optical fiber sensor for long-distance oil pipeline leakage and external damage detection

    NASA Astrophysics Data System (ADS)

    Wang, Yannian; Jiang, Zhuangde

    2006-03-01

    A new distributed optical fiber sensor system for long-distance oil pipeline leakage and external damage detection is presented. A smart and sensitive optical fiber cable is buried beneath the soil running along the oil pipeline, which is sensitive to soakage of oil products and mechanical deformation and vibration caused by leaking, tampering, and mechanical impacting. The region of additional attenuation can be located based on the optical time domain reflectometry (OTDR), and the types of external disturbances can be identified according to the characteristics of transmitted optical power. The Golay codes are utilized to improve the range-resolution performance of the OTDR sub-system and offer a method to characterize the transmitted optical power in a wide range of frequency spectrum. Theoretic analysis and simulation experiment have shown that the application of Golay codes can overcome the shortcomings of the prototype based on the conventional single-pulse OTDR.

  13. Interleukin 12B (IL12B) Genetic Variation and Pulmonary Tuberculosis: A Study of Cohorts from The Gambia, Guinea-Bissau, United States and Argentina

    PubMed Central

    Hill, Philip C.; Wejse, Christian; Bisseye, Cyrille; Olesen, Rikke; Edwards, Todd L.; Gilbert, John R.; Myers, Jamie L.; Stryjewski, Martin E.; Abbate, Eduardo; Estevan, Rosa; Hamilton, Carol D.; Tacconelli, Alessandra; Novelli, Giuseppe; Brunetti, Ercole; Aaby, Peter; Sodemann, Morten; Østergaard, Lars; Adegbola, Richard; Williams, Scott M.; Scott, William K.; Sirugo, Giorgio

    2011-01-01

    We examined whether polymorphisms in interleukin-12B (IL12B) associate with susceptibility to pulmonary tuberculosis (PTB) in two West African populations (from The Gambia and Guinea-Bissau) and in two independent populations from North and South America. Nine polymorphisms (seven SNPs, one insertion/deletion, one microsatellite) were analyzed in 321 PTB cases and 346 controls from Guinea-Bissau and 280 PTB cases and 286 controls from The Gambia. For replication we studied 281 case and 179 control African-American samples and 221 cases and 144 controls of European ancestry from the US and Argentina. First-stage single locus analyses revealed signals of association at IL12B 3′ UTR SNP rs3212227 (unadjusted allelic p = 0.04; additive genotypic p = 0.05, OR = 0.78, 95% CI [0.61–0.99]) in Guinea-Bissau and rs11574790 (unadjusted allelic p = 0.05; additive genotypic p = 0.05, OR = 0.76, 95% CI [0.58–1.00]) in The Gambia. Association of rs3212227 was then replicated in African-Americans (rs3212227 allelic p = 0.002; additive genotypic p = 0.05, OR = 0.78, 95% CI [0.61–1.00]); most importantly, in the African-American cohort, multiple significant signals of association (seven of the nine polymorphisms tested) were detected throughout the gene. These data suggest that genetic variation in IL12B, a highly relevant candidate gene, is a risk factor for PTB in populations of African ancestry, although further studies will be required to confirm this association and identify the precise mechanism underlying it. PMID:21339808

  14. CaNi/sub 12/B/sub 6/: a new boride of the SrNi/sub 12/B/sub 6/ structure type

    SciTech Connect

    Leshko, L.V.; Kuz'ma, Yu.B.

    1987-11-01

    The structure of CaNi/sub 12/B/sub 6/ has been examined from the diffraction pattern (DRON-3.0, Cu K/sub ..cap alpha../ radiation). When the pattern had been indexed to the hexagonal system, the cell parameters were found as ..cap alpha.. = 9.542 (3); c = 7.420 (3) A. The coordinates of the Ca and Ni atoms were refined via the PMNK program with an SM-4 computer, with the initial coordinates those for the metal atoms in SrNi/sub 12/B/sub 6/. The coordinates of the boron atoms were not refined, being taken the same as in SrNi/sub 12/B/sub 6/. The final values for the coordinates (space group R3m) are Ca at 3 (..cap alpha..) 000, B = 3.3 (5) A/sup 2/; 18 Nil at 18 (g) (x = 0.369(2)), B = 0.7(1) A/sup 2/; 18Ni2 at 18 (h) (x = 0.426(1), z = 0.031(2)), B = 0.5(1) A/sup 2/; 18B at 18 (h) (x = 0.191, z = 0.042), B = 3.3(5) A/sup 2/. The intensities were calculated for these coordinates, reliability factor R = 0.108

  15. Multi-Code Ab Initio Calculation of Ionization Distributions and Radiation Losses for Tungsten in Tokamak Plasmas

    SciTech Connect

    Ralchenko, Yu.; Abdallah, J. Jr.; Colgan, J.; Fontes, C. J.; Foster, M.; Zhang, H. L.; Bar-Shalom, A.; Oreg, J.; Bauche, J.; Bauche-Arnoult, C.; Bowen, C.; Faussurier, G.; Chung, H.-K.; Hansen, S. B.; Lee, R. W.; Scott, H.; Gaufridy de Dortan, F. de; Poirier, M.; Golovkin, I.; Novikov, V.

    2009-09-10

    We present calculations of ionization balance and radiative power losses for tungsten in magnetic fusion plasmas. The simulations were performed within the framework of Non-Local Thermodynamic Equilibrium (NLTE) Code Comparison Workshops utilizing several independent collisional-radiative models. The calculations generally agree with each other; however, a clear disagreement with experimental ionization distributions at low temperatures 2 keV

  16. Sequence Prediction With Sparse Distributed Hyperdimensional Coding Applied to the Analysis of Mobile Phone Use Patterns.

    PubMed

    Rasanen, Okko J; Saarinen, Jukka P

    2016-09-01

    Modeling and prediction of temporal sequences is central to many signal processing and machine learning applications. Prediction based on sequence history is typically performed using parametric models, such as fixed-order Markov chains ( n -grams), approximations of high-order Markov processes, such as mixed-order Markov models or mixtures of lagged bigram models, or with other machine learning techniques. This paper presents a method for sequence prediction based on sparse hyperdimensional coding of the sequence structure and describes how higher order temporal structures can be utilized in sparse coding in a balanced manner. The method is purely incremental, allowing real-time online learning and prediction with limited computational resources. Experiments with prediction of mobile phone use patterns, including the prediction of the next launched application, the next GPS location of the user, and the next artist played with the phone media player, reveal that the proposed method is able to capture the relevant variable-order structure from the sequences. In comparison with the n -grams and the mixed-order Markov models, the sparse hyperdimensional predictor clearly outperforms its peers in terms of unweighted average recall and achieves an equal level of weighted average recall as the mixed-order Markov chain but without the batch training of the mixed-order model. PMID:26285224

  17. Code generator using distributed phase shifts applied on a chirped fibre Bragg grating in a semiconductor fibre ring laser

    NASA Astrophysics Data System (ADS)

    D. Simard, Alexandre; LaRochelle, Sophie

    2009-06-01

    As data traffic increases on telecommunication networks, optical communication systems must adapt to deal with this increasing bursty traffic. Packet switched networks are considered a good solution to provide efficient bandwidth management. We recently proposed the use of spectra amplitude codes (SAC) to implement all-optical label processing for packet switching and routing. The implementation of this approach requires agile photonic components including filters and lasers. In this paper, we propose a reconfigurable source able to generate the routing codes, which are composed of two wavelengths on a 25 GHz grid. Our solution is to use a cascade of two chirped fibre Bragg gratings (CFBG) in a semiconductor fibre ring laser. The wavelength selection process comes from distributed phase shifts applied on the CFBG that is used in transmission. Those phase shifts are obtained via local thermal perturbations created by resistive chrome lines deposited on a glass plate. The filter resonances are influenced by four parameters: the chrome line positions, the temperature profile along the fibre, the neighbouring heater state (ON/OFF) and the grating itself. Through numerical modeling, these parameters are optimized to design the appropriate chrome line pattern. With this device, we demonstrate successful generation of reconfigurable SAC codes.

  18. {sup 12}B(n,{gamma})--the influence on r-process nucleosynthesis of light elements

    SciTech Connect

    Lee, H. Y.; Jiang, C. L.; Pardo, R. C.; Rehm, K. E.; Schiffer, J. P.; Goodman, N. J.; Lighthall, J. C.; Marley, S. T.; Wuosmaa, A. H.; Notani, M.; Patel, N.; Tang, X.

    2009-03-04

    Because of interest in the {sup 11,12}B(n,{gamma}) reaction in seeding r-process nucleosynthesis through light neutron-rich nuclei, we have measured the {sup 12}B(d,p) reaction for the first time using the ATLAS in-flight facility at Argonne National Laboratory. We also measured the {sup 11}B(d,p) reaction in the same way for calibration. The spectroscopic factors of excited states and the branching ratio of the neutron-unbound state in {sup 12}B are obtained from the current experiment and the reaction rate for {sup 11}B(n,{gamma}) is discussed in comparison with the theoretical prediction.

  19. A new natural naphtho[1,2-b]furan from the leaves of Cassia fistula.

    PubMed

    Wang, Li-Qin; Tang, Zheng-Rong; Mu, Wei-Hua; Kou, Jun-Feng; He, Dong-Yang

    2013-11-01

    A new naphtho[1,2-b]furan, 2,9-dihydroxy-7-methoxy-4-methylnaphtha[1,2-b]furan-3(2H)-one (1), along with 10 known compounds vanillic acid (2), naringenin (3), glyceryl-1-tetracosanoate (4), moracin J (5), 1,3,8-trihydroxyanthraquinone (6), esculetin (7), mauritianin (8), kaempferol 3-neohesperidoside (9), β-sitosterol (10), and β-daucosterol (11), was isolated from the leaves of Cassia fistula. The structure of the new compound was determined by NMR and X-ray analysis. Compounds 1, 3, 5-9 were isolated from this plant for the first time. The naphtha[1,2-b]furan was firstly isolated from the natural resources. PMID:23822190

  20. LINE: a code which simulates spectral line shapes for fusion reaction products generated by various speed distributions

    SciTech Connect

    Slaughter, D.

    1985-03-01

    A computer code is described which estimates the energy spectrum or ''line-shape'' for the charged particles and ..gamma..-rays produced by the fusion of low-z ions in a hot plasma. The simulation has several ''built-in'' ion velocity distributions characteristic of heated plasmas and it also accepts arbitrary speed and angular distributions although they must all be symmetric about the z-axis. An energy spectrum of one of the reaction products (ion, neutron, or ..gamma..-ray) is calculated at one angle with respect to the symmetry axis. The results are shown in tabular form, they are plotted graphically, and the moments of the spectrum to order ten are calculated both with respect to the origin and with respect to the mean.

  1. Evaluation of the Sub-Channel Code COBRA-TF for Prediction of BWR Fuel Assembly Void Fraction Distribution

    SciTech Connect

    Aydogan, Fatih; Hochreiter, Lawrence E.; Ivanov, Kostadin; Rhee, Gene; Sartori, Enrico

    2006-07-01

    Good quality experimental data is needed to refine the thermal hydraulic models for the prediction of rod bundle void distribution and critical heat flux (CHF) or dry-out. The Nuclear Power Engineering Corporation (NUPEC) has provided a valuable database to evaluate the thermal hydraulic codes [1]. Part of this database was selected for the NUPEC BWR Full-size Fine-Mesh Bundle Tests (BFBT) benchmark sponsored by US NRC, METI-Japan, NEA/OECD and Nuclear Engineering Program of the Pennsylvania State University (PSU). Twenty-five organizations from ten countries have confirmed their intention to participate and will provide code predictions to be compared to the measured data for a series of defined exercises within the framework of the BFBT benchmark. This benchmark data includes both the fine-mesh high quality sub-channel void fraction and critical power data. Using a full BWR rod bundle test facility, the void distribution was measured at mesh sizes smaller than the sub-channel by using a state-of-the-art computer tomography (CT) technology [1]. Experiments were performed for different pressures, flow rates, exit qualities, inlet sub-cooling, power distributions, spacer types and assembly designs. There are microscopic and sub-channel averaged void fraction data from the CT scanner at the bundle exit as well as X-ray densitometer void distribution data at different elevation levels in the rod bundle. Each sub-channel's loss coefficient was calculated with using the Rehme method [2,3], and a COBRA-TF sub-channel model was developed for the NUPEC facility. The BWR assembly that was modeled with COBRA-TF includes two water rods at the center. The predicted sub-channel void fraction values from COBRA-TF are compared with the bundle exit void fraction values measured using the CT-scanner void fraction from the BFBT benchmark data. Different plots are used to examine the code prediction of the void distribution at a sub-channel level for the different sub-channels within

  2. A Multimodal Approach to Coding Discourse: Collaboration, Distributed Cognition, and Geometric Reasoning

    ERIC Educational Resources Information Center

    Evans, Michael A.; Feenstra, Eliot; Ryon, Emily; McNeill, David

    2011-01-01

    Our research aims to identify children's communicative strategies when faced with the task of solving a geometric puzzle in CSCL contexts. We investigated how to identify and trace "distributed cognition" in problem-solving interactions based on discursive cohesion to objects, participants, and prior discursive content, and geometric and…

  3. Transmission Probability Code System for Calculating Neutron Flux Distributions in Hexagonal Geometry.

    1991-01-25

    Version 00 TPHEX calculates the multigroup neutron flux distribution in an assembly of hexagonal cells using a transmission probability (interface current) method. It is primarily intended for calculations on hexagonal LWR fuel assemblies but can be used for other purposes subject to the qualifications mentioned in Restrictions/Limitations.

  4. Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs.

    PubMed

    Wilk, Ronit; Hu, Jack; Blotsky, Dmitry; Krause, Henry M

    2016-03-01

    In a previous analysis of 2300 mRNAs via whole-mount fluorescent in situ hybridization in cellularizing Drosophila embryos, we found that 70% of the transcripts exhibited some form of subcellular localization. To see whether this prevalence is unique to early Drosophila embryos, we examined ∼8000 transcripts over the full course of embryogenesis and ∼800 transcripts in late third instar larval tissues. The numbers and varieties of new subcellular localization patterns are both striking and revealing. In the much larger cells of the third instar larva, virtually all transcripts observed showed subcellular localization in at least one tissue. We also examined the prevalence and variety of localization mechanisms for >100 long noncoding RNAs. All of these were also found to be expressed and subcellularly localized. Thus, subcellular RNA localization appears to be the norm rather than the exception for both coding and noncoding RNAs. These results, which have been annotated and made available on a recompiled database, provide a rich and unique resource for functional gene analyses, some examples of which are provided. PMID:26944682

  5. Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs

    PubMed Central

    Wilk, Ronit; Hu, Jack; Blotsky, Dmitry; Krause, Henry M.

    2016-01-01

    In a previous analysis of 2300 mRNAs via whole-mount fluorescent in situ hybridization in cellularizing Drosophila embryos, we found that 70% of the transcripts exhibited some form of subcellular localization. To see whether this prevalence is unique to early Drosophila embryos, we examined ∼8000 transcripts over the full course of embryogenesis and ∼800 transcripts in late third instar larval tissues. The numbers and varieties of new subcellular localization patterns are both striking and revealing. In the much larger cells of the third instar larva, virtually all transcripts observed showed subcellular localization in at least one tissue. We also examined the prevalence and variety of localization mechanisms for >100 long noncoding RNAs. All of these were also found to be expressed and subcellularly localized. Thus, subcellular RNA localization appears to be the norm rather than the exception for both coding and noncoding RNAs. These results, which have been annotated and made available on a recompiled database, provide a rich and unique resource for functional gene analyses, some examples of which are provided. PMID:26944682

  6. Numeral series hidden in the distribution of atomic mass of amino acids to codon domains in the genetic code.

    PubMed

    Wohlin, Åsa

    2015-03-21

    The distribution of codons in the nearly universal genetic code is a long discussed issue. At the atomic level, the numeral series 2x(2) (x=5-0) lies behind electron shells and orbitals. Numeral series appear in formulas for spectral lines of hydrogen. The question here was if some similar scheme could be found in the genetic code. A table of 24 codons was constructed (synonyms counted as one) for 20 amino acids, four of which have two different codons. An atomic mass analysis was performed, built on common isotopes. It was found that a numeral series 5 to 0 with exponent 2/3 times 10(2) revealed detailed congruency with codon-grouped amino acid side-chains, simultaneously with the division on atom kinds, further with main 3rd base groups, backbone chains and with codon-grouped amino acids in relation to their origin from glycolysis or the citrate cycle. Hence, it is proposed that this series in a dynamic way may have guided the selection of amino acids into codon domains. Series with simpler exponents also showed noteworthy correlations with the atomic mass distribution on main codon domains; especially the 2x(2)-series times a factor 16 appeared as a conceivable underlying level, both for the atomic mass and charge distribution. Furthermore, it was found that atomic mass transformations between numeral systems, possibly interpretable as dimension degree steps, connected the atomic mass of codon bases with codon-grouped amino acids and with the exponent 2/3-series in several astonishing ways. Thus, it is suggested that they may be part of a deeper reference system. PMID:25623487

  7. Discovery of novel potent imidazo[1,2-b]pyridazine PDE10a inhibitors.

    PubMed

    Meegalla, Sanath K; Huang, Hui; Illig, Carl R; Parks, Daniel J; Chen, Jinsheng; Lee, Yu-Kai; Wilson, Kenneth J; Patel, Sharmila K; Cheung, Wing S; Lu, Tianbao; Kirchner, Thomas; Askari, Hossein B; Geisler, John; Patch, Raymond J; Gibbs, Alan C; Rady, Brian; Connelly, Margery; Player, Mark R

    2016-09-01

    Design and optimization of a novel series of imidazo[1,2-b]pyridazine PDE10a inhibitors are described. Compound 31 displays excellent pharmacokinetic properties and was also evaluated as an insulin secretagogue in vitro and in vivo. PMID:27491708

  8. 17 CFR 240.12b-13 - Preparation of statement or report.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 17 Commodity and Securities Exchanges 3 2010-04-01 2010-04-01 false Preparation of statement or... Under the Securities Exchange Act of 1934 Formal Requirements § 240.12b-13 Preparation of statement or report. The statement or report shall contain the numbers and captions of all items of the...

  9. CLONING AND CHARACTERIZATION OF THE PHTHALATE CATABOLISM REGION OF PRE1 OF ARTHROBACTER KEYSERI 12B

    EPA Science Inventory

    o-Phthalate (benzene-1,2-dicarboxylate) is a central intermediate in the bacterial degradation of phthalate ester plasticizers as well as of a number of fused-ring polycyclic aromatic hydrocarbons found in fossil fuels. In Arthrobacter keyseri 12B, the genes encoding catabolism o...

  10. 17 CFR 240.12b-10 - Requirements as to proper form.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 17 Commodity and Securities Exchanges 3 2013-04-01 2013-04-01 false Requirements as to proper form... Securities Exchange Act of 1934 Formal Requirements § 240.12b-10 Requirements as to proper form. Every statement or report shall be on the form prescribed therefor by the Commission, as in effect on the date...

  11. 17 CFR 240.12b-10 - Requirements as to proper form.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 17 Commodity and Securities Exchanges 4 2014-04-01 2014-04-01 false Requirements as to proper form... Securities Exchange Act of 1934 Formal Requirements § 240.12b-10 Requirements as to proper form. Every statement or report shall be on the form prescribed therefor by the Commission, as in effect on the date...

  12. 17 CFR 240.12b-10 - Requirements as to proper form.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 17 Commodity and Securities Exchanges 3 2010-04-01 2010-04-01 false Requirements as to proper form... Securities Exchange Act of 1934 Formal Requirements § 240.12b-10 Requirements as to proper form. Every statement or report shall be on the form prescribed therefor by the Commission, as in effect on the date...

  13. MCNP(TM) Release 6.1.1 beta: Creating and Testing the Code Distribution

    SciTech Connect

    Cox, Lawrence J.; Casswell, Laura

    2014-06-12

    This report documents the preparations for and testing of the production release of MCNP6™1.1 beta through RSICC at ORNL. It addresses tests on supported operating systems (Linux, MacOSX, Windows) with the supported compilers (Intel, Portland Group and gfortran). Verification and Validation test results are documented elsewhere. This report does not address in detail the overall packaging of the distribution. Specifically, it does not address the nuclear and atomic data collection, the other included software packages (MCNP5, MCNPX and MCNP6) and the collection of reference documents.

  14. Clinical CT-based calculations of dose and positron emitter distributions in proton therapy using the FLUKA Monte Carlo code

    PubMed Central

    Parodi, K; Ferrari, A; Sommerer, F; Paganetti, H

    2008-01-01

    Clinical investigations on post-irradiation PET/CT (positron emission tomography / computed tomography) imaging for in-vivo verification of treatment delivery and, in particular, beam range in proton therapy are underway at Massachusetts General Hospital (MGH). Within this project we have developed a Monte Carlo framework for CT-based calculation of dose and irradiation induced positron emitter distributions. Initial proton beam information is provided by a separate Geant4 Monte Carlo simulation modeling the treatment head. Particle transport in the patient is performed in the CT voxel geometry using the FLUKA Monte Carlo code. The implementation uses a discrete number of different tissue types with composition and mean density deduced from the CT scan. Scaling factors are introduced to account for the continuous Hounsfield Unit dependence of the mass density and of the relative stopping power ratio to water used by the treatment planning system (XiO (Computerized Medical Systems Inc.)). Resulting Monte Carlo dose distributions are generally found in good correspondence with calculations of the treatment planning program, except few cases (e.g. in the presence of air/tissue interfaces). Whereas dose is computed using standard FLUKA utilities, positron emitter distributions are calculated by internally combining proton fluence with experimental and evaluated cross-sections yielding 11C, 15O, 14O, 13N, 38K and 30P. Simulated positron emitter distributions yield PET images in good agreement with measurements. In this paper we describe in detail the specific implementation of the FLUKA calculation framework, which may be easily adapted to handle arbitrary phase spaces of proton beams delivered by other facilities or include more reaction channels based on additional cross-section data. Further, we demonstrate the effects of different acquisition time regimes (e.g., PET imaging during or after irradiation) on the intensity and spatial distribution of the irradiation

  15. Clinical CT-based calculations of dose and positron emitter distributions in proton therapy using the FLUKA Monte Carlo code

    NASA Astrophysics Data System (ADS)

    Parodi, K.; Ferrari, A.; Sommerer, F.; Paganetti, H.

    2007-07-01

    Clinical investigations on post-irradiation PET/CT (positron emission tomography/computed tomography) imaging for in vivo verification of treatment delivery and, in particular, beam range in proton therapy are underway at Massachusetts General Hospital (MGH). Within this project, we have developed a Monte Carlo framework for CT-based calculation of dose and irradiation-induced positron emitter distributions. Initial proton beam information is provided by a separate Geant4 Monte Carlo simulation modelling the treatment head. Particle transport in the patient is performed in the CT voxel geometry using the FLUKA Monte Carlo code. The implementation uses a discrete number of different tissue types with composition and mean density deduced from the CT scan. Scaling factors are introduced to account for the continuous Hounsfield unit dependence of the mass density and of the relative stopping power ratio to water used by the treatment planning system (XiO (Computerized Medical Systems Inc.)). Resulting Monte Carlo dose distributions are generally found in good correspondence with calculations of the treatment planning program, except a few cases (e.g. in the presence of air/tissue interfaces). Whereas dose is computed using standard FLUKA utilities, positron emitter distributions are calculated by internally combining proton fluence with experimental and evaluated cross-sections yielding 11C, 15O, 14O, 13N, 38K and 30P. Simulated positron emitter distributions yield PET images in good agreement with measurements. In this paper, we describe in detail the specific implementation of the FLUKA calculation framework, which may be easily adapted to handle arbitrary phase spaces of proton beams delivered by other facilities or include more reaction channels based on additional cross-section data. Further, we demonstrate the effects of different acquisition time regimes (e.g., PET imaging during or after irradiation) on the intensity and spatial distribution of the irradiation

  16. Reliability-aware iterative detection scheme (RAID) for distributed IDM space-time codes in relay systems

    NASA Astrophysics Data System (ADS)

    Lenkeit, Florian; Wübben, Dirk; Dekorsy, Armin

    2013-12-01

    In this article, distributed interleave-division multiplexing space-time codes (dIDM-STCs) are applied for multi-user two-hop decode-and-forward (DF) relay networks. In case of decoding errors at the relays which propagate to the destination, severe performance degradations can occur as the original detection scheme for common IDM-STCs does not take any reliability information about the first hop into account. Here, a novel reliability-aware iterative detection scheme (RAID) for dIDM-STCs is proposed. This new detection scheme takes the decoding reliability of the relays for each user into account for the detection at the destination. Performance evaluations show that the proposed RAID scheme clearly outperforms the original detection scheme and that in certain scenarios even a better performance than for adaptive relaying schemes can be achieved.

  17. Emergence of Visual Saliency from Natural Scenes via Context-Mediated Probability Distributions Coding

    PubMed Central

    Xu, Jinhua; Yang, Zhiyong; Tsien, Joe Z.

    2010-01-01

    Visual saliency is the perceptual quality that makes some items in visual scenes stand out from their immediate contexts. Visual saliency plays important roles in natural vision in that saliency can direct eye movements, deploy attention, and facilitate tasks like object detection and scene understanding. A central unsolved issue is: What features should be encoded in the early visual cortex for detecting salient features in natural scenes? To explore this important issue, we propose a hypothesis that visual saliency is based on efficient encoding of the probability distributions (PDs) of visual variables in specific contexts in natural scenes, referred to as context-mediated PDs in natural scenes. In this concept, computational units in the model of the early visual system do not act as feature detectors but rather as estimators of the context-mediated PDs of a full range of visual variables in natural scenes, which directly give rise to a measure of visual saliency of any input stimulus. To test this hypothesis, we developed a model of the context-mediated PDs in natural scenes using a modified algorithm for independent component analysis (ICA) and derived a measure of visual saliency based on these PDs estimated from a set of natural scenes. We demonstrated that visual saliency based on the context-mediated PDs in natural scenes effectively predicts human gaze in free-viewing of both static and dynamic natural scenes. This study suggests that the computation based on the context-mediated PDs of visual variables in natural scenes may underlie the neural mechanism in the early visual cortex for detecting salient features in natural scenes. PMID:21209963

  18. Calculation of the pressure distribution on a pitching airfoil with application to the Darrieus Rotor. [Computer code DARIUS

    SciTech Connect

    Ghodoosian, N.

    1984-05-01

    An analytical model leading to the pressure distribution on the cross section of a Darrieus Rotor Blade (airfoil) has veen constructed. The model is based on the inviscid flow theory and the contribution of the nonsteady wake vortices was neglected. The analytical model was translated into a computer code in order to study a variety of boundary conditions encountered by the rotating blades of the Darrieus Rotor. Results indicate that, for a pitching airfoil, lift can be adequately approximated by the Kutta-Joukowski forces, despite notable deviations in the pressure distribution on the airfoil. These deviations are most significant at the upwind half of the Darrieus Rotor where higher life is accompanied by increased adverse pressure gradients. The effect of pitching on lift can be approximated by a linear shift in the angle of attack proportional to the blade angular velocity. Tabulation of the fluid velocity about the pitching-only NACA 0015 allowed the principle of superposition to be used to determine the fluid velocity about a translating and pitching airfoil.

  19. Volatile enrichments and composition of carbon-rich giant planets: the case of WASP-12b

    NASA Astrophysics Data System (ADS)

    Mousis, O.; Madhusudhan, N.; Johnson, T. V.; Lunine, J. I.

    2011-10-01

    Carbon-rich planets (CRPs) are the exotic new members in the repertoire of extrasolar planets. We define a CRP as a planet with a carbon to oxygen (C/O) ratio ? 1. The first CRP atmosphere was inferred recently for the very hot Jupiter WASP-12b [1]. Here we show that it is not possible to reproduce the C/O ratio ? 1 observed in WASP-12b via the accretion of planetesimals formed in a disk whose gas phase elemental composition is similar to the one of the parent star. In order to reproduce the observed C/O ratio in the planet, one needs to invoke an oxygen abundance which is depleted by a factor of roughly two compared to that of the parent star, with the exact value contingent on the volatile-to-silicate fraction.

  20. DISCOVERY AND ATMOSPHERIC CHARACTERIZATION OF GIANT PLANET KEPLER-12b: AN INFLATED RADIUS OUTLIER

    SciTech Connect

    Fortney, Jonathan J.; Nutzman, Philip; Demory, Brice-Olivier; Desert, Jean-Michel; Buchhave, Lars A.; Charbonneau, David; Fressin, Francois; Rowe, Jason; Caldwell, Douglas A.; Jenkins, Jon M.; Ciardi, David; Gautier, Thomas N.; Bryson, Stephen T.; Howell, Steve B.; Everett, Mark; and others

    2011-11-01

    We report the discovery of planet Kepler-12b (KOI-20), which at 1.695 {+-} 0.030 R{sub J} is among the handful of planets with super-inflated radii above 1.65 R{sub J}. Orbiting its slightly evolved G0 host with a 4.438 day period, this 0.431 {+-} 0.041 M{sub J} planet is the least irradiated within this largest-planet-radius group, which has important implications for planetary physics. The planet's inflated radius and low mass lead to a very low density of 0.111 {+-} 0.010 g cm{sup -3}. We detect the occultation of the planet at a significance of 3.7{sigma} in the Kepler bandpass. This yields a geometric albedo of 0.14 {+-} 0.04; the planetary flux is due to a combination of scattered light and emitted thermal flux. We use multiple observations with Warm Spitzer to detect the occultation at 7{sigma} and 4{sigma} in the 3.6 and 4.5 {mu}m bandpasses, respectively. The occultation photometry timing is consistent with a circular orbit at e < 0.01 (1{sigma}) and e < 0.09 (3{sigma}). The occultation detections across the three bands favor an atmospheric model with no dayside temperature inversion. The Kepler occultation detection provides significant leverage, but conclusions regarding temperature structure are preliminary, given our ignorance of opacity sources at optical wavelengths in hot Jupiter atmospheres. If Kepler-12b and HD 209458b, which intercept similar incident stellar fluxes, have the same heavy-element masses, the interior energy source needed to explain the large radius of Kepler-12b is three times larger than that of HD 209458b. This may suggest that more than one radius-inflation mechanism is at work for Kepler-12b or that it is less heavy-element rich than other transiting planets.

  1. Spin reorientation and magnetic structure of HoCo12B6 ferrimagnetic compound

    NASA Astrophysics Data System (ADS)

    Diop, L. V. B.; Isnard, O.

    2015-01-01

    The magnetic phase diagram is determined by combining magnetization measurements, ac susceptibility and neutron diffraction. The crystal and magnetic structures are also investigated. The HoCo12B6 compound exhibits ferrimagnetic behavior below TC = 147 K. Two antiferromagnetically coupled sublattices cancel out at the compensation temperature TComp = 46 K. HoCo12B6 undergoes a spin reorientation transition at TSR = 76 K the easy magnetization axis changes from axial to basal plane upon heating. The magnitude of the magnetic moments and their orientation are described and discussed. It is revealed that HoCo12B6 compound exhibits a commensurate magnetic structure below TSR and an incommensurate one slightly above TSR. Significantly different magnetic moments have been observed on the two Co crystal sites, a very low magnetic moment of 0.14 μB being refined on the Co 18 g position. In addition, the second order crystal electric-field parameter A20 at the rare-earth site is determined. This result is discussed and used to explain the observed spin reorientation transition by a competition between the Co and Ho sublattice anisotropy.

  2. Inverse and normal magnetocaloric effects in LaFe12B6

    NASA Astrophysics Data System (ADS)

    Diop, L. V. B.; Isnard, O.

    2016-06-01

    Intrinsic magnetic properties and magnetocaloric effect were studied for LaFe12B6 itinerant-electron system, which presents an antiferromagnetic ground state below 36 K. For certain magnetic fields values, LaFe12B6 exhibits a sequence of two successive magnetic transitions: an antiferromagnetic-ferromagnetic (AFM-FM) transition at low temperature followed by a ferromagnetic-paramagnetic transition, leading to normal and inverse magnetocaloric effects, respectively. At finite temperatures, both antiferromagnetic (AFM) and paramagnetic states can be transformed into a ferromagnetic (FM) state via a field-induced metamagnetic transition accompanied with a huge magnetic hysteresis. Moreover, we reveal that, at low temperatures, the magnetization displays abrupt jumps across the first-order AFM-FM transition, giving rise to an unusual and unique staircase-like behavior. LaFe12B6 exhibits both normal magnetocaloric effect around the Curie temperature and large inverse magnetocaloric effect around the AFM-FM transition temperature; for μ0ΔH = 7 T, ΔSM is found to be -6.8 and 19 J kg-1 K-1 around 38 and 8 K, respectively.

  3. The Correlation of Serum IL-12B Expression With Disease Activity in Patients With Inflammatory Bowel Disease

    PubMed Central

    Lee, Hye Won; Chung, Sook Hee; Moon, Chang Mo; Che, Xiumei; Kim, Seung Won; Park, Soo Jung; Hong, Sung Pil; Kim, Tae Il; Kim, Won Ho; Cheon, Jae Hee

    2016-01-01

    Abstract Genetic variants in IL12B, encoding the p40 subunit common in interleukin-12 (IL-12) and interleukin-23, were identified as the susceptibility loci for inflammatory bowel disease (IBD). This study aimed to identify the correlation of serum IL-12B expression with disease activity in patients with IBD and evaluate the possibility of IL-12B as a biomarker for assessing inflammatory status in IBD. A total of 102 patients with IBD, including 38, 32, and 32 patients with Crohn's disease (CD), ulcerative colitis (UC), and intestinal Behçet's disease (intestinal BD), respectively, were included. The clinical and laboratory data from the patients were collected at the time of serum IL-12B measurement. Serum IL-12B levels were measured using an enzyme-linked immunosorbent assay. The median IL-12B levels in patients with CD, UC, and intestinal BD were significantly higher than those in controls (1.87, 2.74, and 2.73 pg/mL, respectively, vs. 1.42 pg/mL, all P <0.05). IL-12B concentrations were associated with disease activity in patients with UC and intestinal BD but not in those with CD. IL-12B levels were increased with increasing disease activity in patients with UC (P <0.001). Likewise, patients with active intestinal BD had higher IL-12B levels than those without active disease (P = 0.008). IL-12B levels were correlated with the endoscopic disease activity of UC (P = 0.002) and intestinal BD (P = 0.001) but not that of CD. Serum IL-12B levels were significantly correlated with clinical and endoscopic disease activity in patients with UC and intestinal BD, suggesting its potential use as a biomarker for assessing disease activity in these patients. PMID:27281077

  4. Scaling properties and fractality in the distribution of coding segments in eukaryotic genomes revealed through a block entropy approach

    NASA Astrophysics Data System (ADS)

    Athanasopoulou, Labrini; Athanasopoulos, Stavros; Karamanos, Kostas; Almirantis, Yannis

    2010-11-01

    Statistical methods, including block entropy based approaches, have already been used in the study of long-range features of genomic sequences seen as symbol series, either considering the full alphabet of the four nucleotides or the binary purine or pyrimidine character set. Here we explore the alternation of short protein-coding segments with long noncoding spacers in entire chromosomes, focusing on the scaling properties of block entropy. In previous studies, it has been shown that the sizes of noncoding spacers follow power-law-like distributions in most chromosomes of eukaryotic organisms from distant taxa. We have developed a simple evolutionary model based on well-known molecular events (segmental duplications followed by elimination of most of the duplicated genes) which reproduces the observed linearity in log-log plots. The scaling properties of block entropy H(n) have been studied in several works. Their findings suggest that linearity in semilogarithmic scale characterizes symbol sequences which exhibit fractal properties and long-range order, while this linearity has been shown in the case of the logistic map at the Feigenbaum accumulation point. The present work starts with the observation that the block entropy of the Cantor-like binary symbol series scales in a similar way. Then, we perform the same analysis for the full set of human chromosomes and for several chromosomes of other eukaryotes. A similar but less extended linearity in semilogarithmic scale, indicating fractality, is observed, while randomly formed surrogate sequences clearly lack this type of scaling. Genomic sequences always present entropy values much lower than their random surrogates. Symbol sequences produced by the aforementioned evolutionary model follow the scaling found in genomic sequences, thus corroborating the conjecture that “segmental duplication-gene elimination” dynamics may have contributed to the observed long rangeness in the coding or noncoding alternation in

  5. Lattice Location of 12B in Single-Crystal Ni3Al Studied by -Radiation Detected NMR

    NASA Astrophysics Data System (ADS)

    Fischer, B.; Ittermann, B.; Diehl, E.; Dippel, R.; Ergezinger, K. H.; Frank, H.-P.; Jäger, E.; Seelinger, W.; Sulzer, G.; Ackermann, H.; Stöckmann, H.-J.; Bohn, H. G.

    -radiation detected nuclear magnetic resonance was applied to determine the location of 12B probe nuclei in a Ni3Al single crystal. Combining our results with those of channeling experiments it turned out that more than 90% of the 12B ions occupy the octahedral interstitial site with six Ni ions as nearest neighbours.Translated AbstractGitterplatzbestimmung von 12B im Ni3Al-Einkristall mittels -strahlungsdetektierter NMRDer Einbauplatz des Sondenkerns 12B im Ni3Al-Einkristall wurde durch Kernresonanz mit β-Strahlungsnachweis bestimmt. Aus der Kombination mit Ergebnissen von Gitterführungsexperimenten ergab sich, daß über 90% der 12B-Ionen auf oktaedrischen Zwischengitterplätzen mit sechs Ni-Ionen als nächsten Nachbarn eingebaut werden.

  6. mGrid: A load-balanced distributed computing environment for the remote execution of the user-defined Matlab code

    PubMed Central

    Karpievitch, Yuliya V; Almeida, Jonas S

    2006-01-01

    Background Matlab, a powerful and productive language that allows for rapid prototyping, modeling and simulation, is widely used in computational biology. Modeling and simulation of large biological systems often require more computational resources then are available on a single computer. Existing distributed computing environments like the Distributed Computing Toolbox, MatlabMPI, Matlab*G and others allow for the remote (and possibly parallel) execution of Matlab commands with varying support for features like an easy-to-use application programming interface, load-balanced utilization of resources, extensibility over the wide area network, and minimal system administration skill requirements. However, all of these environments require some level of access to participating machines to manually distribute the user-defined libraries that the remote call may invoke. Results mGrid augments the usual process distribution seen in other similar distributed systems by adding facilities for user code distribution. mGrid's client-side interface is an easy-to-use native Matlab toolbox that transparently executes user-defined code on remote machines (i.e. the user is unaware that the code is executing somewhere else). Run-time variables are automatically packed and distributed with the user-defined code and automated load-balancing of remote resources enables smooth concurrent execution. mGrid is an open source environment. Apart from the programming language itself, all other components are also open source, freely available tools: light-weight PHP scripts and the Apache web server. Conclusion Transparent, load-balanced distribution of user-defined Matlab toolboxes and rapid prototyping of many simple parallel applications can now be done with a single easy-to-use Matlab command. Because mGrid utilizes only Matlab, light-weight PHP scripts and the Apache web server, installation and configuration are very simple. Moreover, the web-based infrastructure of mGrid allows for it

  7. Determination of neutron flux distribution by using ANISN, a one-dimensional discrete S sub n ordinates transport code with anisotropic scattering

    NASA Technical Reports Server (NTRS)

    Ghorai, S. K.

    1983-01-01

    The purpose of this project was to use a one-dimensional discrete coordinates transport code called ANISN in order to determine the energy-angle-spatial distribution of neutrons in a 6-feet cube rock box which houses a D-T neutron generator at its center. The project was two-fold. The first phase of the project involved adaptation of the ANISN code written for an IBM 360/75/91 computer to the UNIVAC system at JSC. The second phase of the project was to use the code with proper geometry, source function and rock material composition in order to determine the neutron flux distribution around the rock box when a 14.1 MeV neutron generator placed at its center is activated.

  8. Determination of neutron flux distribution by using ANISN, a one-dimensional discrete S sub n ordinates transport code with anisotropic scattering

    NASA Astrophysics Data System (ADS)

    Ghorai, S. K.

    1983-09-01

    The purpose of this project was to use a one-dimensional discrete coordinates transport code called ANISN in order to determine the energy-angle-spatial distribution of neutrons in a 6-feet cube rock box which houses a D-T neutron generator at its center. The project was two-fold. The first phase of the project involved adaptation of the ANISN code written for an IBM 360/75/91 computer to the UNIVAC system at JSC. The second phase of the project was to use the code with proper geometry, source function and rock material composition in order to determine the neutron flux distribution around the rock box when a 14.1 MeV neutron generator placed at its center is activated.

  9. Design and simulation of material-integrated distributed sensor processing with a code-based agent platform and mobile multi-agent systems.

    PubMed

    Bosse, Stefan

    2015-01-01

    Multi-agent systems (MAS) can be used for decentralized and self-organizing data processing in a distributed system, like a resource-constrained sensor network, enabling distributed information extraction, for example, based on pattern recognition and self-organization, by decomposing complex tasks in simpler cooperative agents. Reliable MAS-based data processing approaches can aid the material-integration of structural-monitoring applications, with agent processing platforms scaled to the microchip level. The agent behavior, based on a dynamic activity-transition graph (ATG) model, is implemented with program code storing the control and the data state of an agent, which is novel. The program code can be modified by the agent itself using code morphing techniques and is capable of migrating in the network between nodes. The program code is a self-contained unit (a container) and embeds the agent data, the initialization instructions and the ATG behavior implementation. The microchip agent processing platform used for the execution of the agent code is a standalone multi-core stack machine with a zero-operand instruction format, leading to a small-sized agent program code, low system complexity and high system performance. The agent processing is token-queue-based, similar to Petri-nets. The agent platform can be implemented in software, too, offering compatibility at the operational and code level, supporting agent processing in strong heterogeneous networks. In this work, the agent platform embedded in a large-scale distributed sensor network is simulated at the architectural level by using agent-based simulation techniques. PMID:25690550

  10. Design and Simulation of Material-Integrated Distributed Sensor Processing with a Code-Based Agent Platform and Mobile Multi-Agent Systems

    PubMed Central

    Bosse, Stefan

    2015-01-01

    Multi-agent systems (MAS) can be used for decentralized and self-organizing data processing in a distributed system, like a resource-constrained sensor network, enabling distributed information extraction, for example, based on pattern recognition and self-organization, by decomposing complex tasks in simpler cooperative agents. Reliable MAS-based data processing approaches can aid the material-integration of structural-monitoring applications, with agent processing platforms scaled to the microchip level. The agent behavior, based on a dynamic activity-transition graph (ATG) model, is implemented with program code storing the control and the data state of an agent, which is novel. The program code can be modified by the agent itself using code morphing techniques and is capable of migrating in the network between nodes. The program code is a self-contained unit (a container) and embeds the agent data, the initialization instructions and the ATG behavior implementation. The microchip agent processing platform used for the execution of the agent code is a standalone multi-core stack machine with a zero-operand instruction format, leading to a small-sized agent program code, low system complexity and high system performance. The agent processing is token-queue-based, similar to Petri-nets. The agent platform can be implemented in software, too, offering compatibility at the operational and code level, supporting agent processing in strong heterogeneous networks. In this work, the agent platform embedded in a large-scale distributed sensor network is simulated at the architectural level by using agent-based simulation techniques. PMID:25690550

  11. The formation of choline O-sulphate by Pseudomonas C12B and other Pseudomonas species

    PubMed Central

    Fitzgerald, John W.

    1973-01-01

    Pseudomonas C12B and other Pseudomonas species released larger amounts of a 35S-labelled metabolite into the medium when cultured on growth-limiting concentrations of Na2SO4 as opposed to growth in SO42−-sufficient media. The metabolite was found at all stages of the culture cycle of Pseudomonas C12B and maximum quantities occurred in stationary-phase culture supernatants. The metabolite was not detected when the bacterium was cultured on growth-limiting concentrations of potassium phosphate. The amount of the metabolite present in the medium greatly exceeded that which could be extracted from intact cells and, except for choline chloride, it was independent of the carbon source used for growth. If choline chloride was present in high concentration, then larger amounts of the metabolite were found in the culture medium. The metabolite was not detected extracellularly or intracellularly when the bacterium was grown in SO42−-deficient media containing 5mm-l-cysteine. The same metabolite was also synthesized in vitro only when Pseudomonas C12B extracts were incubated with choline chloride, ATP, MgCl2 and Na235SO4. The metabolite-forming system was not subject to repression by Na2SO4 and was completely inhibited by 0.5mm-l-cysteine and activated by Na2SO4 (up to 1.0mm). The metabolite was identified as choline O-sulphate by electrophoresis, chromatography and isotope-dilution analysis. Another 35S-labelled metabolite was also detected in culture supernatants, but was not identified. PMID:4590202

  12. High Resolution Spectroscopy of {sub {lambda}}{sup 12}B by Electroproduction

    SciTech Connect

    Iodice, M.; Cusanno, F.; Urciuoli, G. M.; Acha, A.; Ambrozewicz, P.; Coman, L.; Markowitz, P.; Moteabbed, M.; Raue, B.; Reinhold, J.; Aniol, K. A.; Margaziotis, D. J.; Baturin, P.; Jiang, X.; McCormick, K.; Bertin, P. Y.; Camsonne, A.; Ferdi, C.; Blomqvist, K. I.

    2007-08-03

    An experiment measuring electroproduction of hypernuclei has been performed in hall A at Jefferson Lab on a {sup 12}C target. In order to increase counting rates and provide unambiguous kaon identification two superconducting septum magnets and a ring imaging Cherenkov detector were added to the hall A standard equipment. An unprecedented energy resolution of less than 700 keV FWHM has been achieved. Thus, the observed {sub {lambda}}{sup 12}B spectrum shows for the first time identifiable strength in the core-excited region between the ground-state s-wave {lambda} peak and the 11 MeV p-wave {lambda} peak.

  13. Independent measurement of the Hoyle state β feeding from 12B using Gammasphere

    NASA Astrophysics Data System (ADS)

    Munch, M.; Alcorta, M.; Fynbo, H. O. U.; Albers, M.; Almaraz-Calderon, S.; Avila, M. L.; Ayangeakaa, A. D.; Back, B. B.; Bertone, P. F.; Carnelli, P. F. F.; Carpenter, M. P.; Chiara, C. J.; Clark, J. A.; DiGiovine, B.; Greene, J. P.; Harker, J. L.; Hoffman, C. R.; Hubbard, N. J.; Jiang, C. L.; Kirsebom, O. S.; Lauritsen, T.; Laursen, K. L.; Marley, S. T.; Nair, C.; Nusair, O.; Santiago-Gonzalez, D.; Sethi, J.; Seweryniak, D.; Talwar, R.; Ugalde, C.; Zhu, S.

    2016-06-01

    Using an array of high-purity Compton-suppressed germanium detectors, we performed an independent measurement of the β -decay branching ratio from 12B to the second-excited state, also known as the Hoyle state, in 12C. Our result is 0.64 (11 )% , which is a factor ˜2 smaller than the previously established literature value, but is in agreement with another recent measurement. This could indicate that the Hoyle state is more clustered than previously believed. The angular correlation of the Hoyle state γ cascade has also been measured for the first time. It is consistent with theoretical predictions.

  14. Synthesis and fluorosolvatochromism of 3-arylnaphtho[1,2-b]quinolizinium derivatives

    PubMed Central

    Pithan, Phil M; Decker, David; Sardo, Manlio Sutero; Viola, Giampietro

    2016-01-01

    Summary Cationic biaryl derivatives were synthesized by Suzuki–Miyaura coupling of 3-bromonaphtho[1,2-b]quinolizinium bromide with arylboronic acids. The resulting cationic biaryl derivatives exhibit pronounced fluorosolvatochromic properties. First photophysical studies in different solvents showed that the emission energy of the biaryl derivatives decreases with increasing solvent polarity. This red-shifted emission in polar solvents is explained by a charge shift (CS) in the excited state and subsequent solvent relaxation. Furthermore, the polarity of protic polar and aprotic polar solvents affects the emission energy to different extent, which indicates a major influence of hydrogen bonding on the stabilization of the ground and excited states. PMID:27340476

  15. Synthesis and fluorosolvatochromism of 3-arylnaphtho[1,2-b]quinolizinium derivatives.

    PubMed

    Pithan, Phil M; Decker, David; Sardo, Manlio Sutero; Viola, Giampietro; Ihmels, Heiko

    2016-01-01

    Cationic biaryl derivatives were synthesized by Suzuki-Miyaura coupling of 3-bromonaphtho[1,2-b]quinolizinium bromide with arylboronic acids. The resulting cationic biaryl derivatives exhibit pronounced fluorosolvatochromic properties. First photophysical studies in different solvents showed that the emission energy of the biaryl derivatives decreases with increasing solvent polarity. This red-shifted emission in polar solvents is explained by a charge shift (CS) in the excited state and subsequent solvent relaxation. Furthermore, the polarity of protic polar and aprotic polar solvents affects the emission energy to different extent, which indicates a major influence of hydrogen bonding on the stabilization of the ground and excited states. PMID:27340476

  16. WASP-12b as a prolate, inflated and disrupting planet from tidal dissipation.

    PubMed

    Li, Shu-Lin; Miller, N; Lin, Douglas N C; Fortney, Jonathan J

    2010-02-25

    The class of exotic Jupiter-mass planets that orbit very close to their parent stars were not explicitly expected before their discovery. The recently discovered transiting planet WASP-12b has a mass M = 1.4 +/- 0.1 Jupiter masses (M(J)), a mean orbital distance of only 3.1 stellar radii (meaning it is subject to intense tidal forces), and a period of 1.1 days. Its radius 1.79 +/- 0.09R(J) is unexpectedly large and its orbital eccentricity 0.049 +/- 0.015 is even more surprising because such close orbits are usually quickly circularized. Here we report an analysis of its properties, which reveals that the planet is losing mass to its host star at a rate of about 10(-7)M(J) per year. The planet's surface is distorted by the star's gravity and the light curve produced by its prolate shape will differ by about ten per cent from that of a spherical planet. We conclude that dissipation of the star's tidal perturbation in the planet's convective envelope provides the energy source for its large volume. We predict up to 10 mJy CO band-head (2.292 mum) emission from a tenuous disk around the host star, made up of tidally stripped planetary gas. It may also contain a detectable resonant super-Earth, as a hypothetical perturber that continually stirs up WASP-12b's eccentricity. PMID:20182506

  17. IL12B expression is sustained by a heterogenous population of myeloid lineages during tuberculosis

    PubMed Central

    Reeme, Allison E.; Miller, Halli E.; Robinson, Richard T.

    2015-01-01

    Summary IL12B is required for resistance to Mycobacterium tuberculosis (Mtb) infection, promoting the initiation and maintenance of Mtb-specific effector responses. While this makes the IL12-pathway an attractive target for experimental tuberculosis (TB) therapies, data regarding what lineages express IL12B after infection is established are limited. This is not obvious in the lung, an organ in which both hematopoietic and non-hematopoietic lineages produce IL12p40 upon pathogen encounter. Here, we use radiation bone marrow chimeras and Yet40 reporter mice to determine what lineages produce IL12p40 during experimental TB. We observed that hematopoietic IL12p40-production was sufficient to control Mtb, with no contribution by non-hematopoietic lineages. Furthermore, rather than being produced by a single subset, IL12p40 was produced by cells that were heterogenous in their size, granularity, autofluorescence and expression of CD11c, CD11b and CD8α. While depending on the timepoint and tissue examined, the surface phenotype of IL12p40-producers most closely resembled macrophages based on previous surveys of lung myeloid lineages. Importantly, depletion of CDllchi cells during infection had no affect on lung IL12p40-concentrations. Collectively, our data demonstrate that IL12p40 production is sustained by a heterogenous population of myeloid lineages during experimental TB, and that redundant mechanisms of IL12p40-production exist when CD11chi lineages are absent. PMID:23491716

  18. A PHOTOCHEMICAL MODEL FOR THE CARBON-RICH PLANET WASP-12b

    SciTech Connect

    Kopparapu, Ravi kumar; Kasting, James F.; Zahnle, Kevin J.

    2012-01-20

    The hot-Jupiter WASP-12b is a heavily irradiated exoplanet in a short-period orbit around a G0-star with twice the metallicity of the Sun. A recent thermochemical equilibrium analysis based on Spitzer and ground-based infrared observations suggests that the presence of CH{sub 4} in its atmosphere and the lack of H{sub 2}O features can only be explained if the carbon-to-oxygen ratio in the planet's atmosphere is much greater than the solar ratio ([C]/[O] = 0.54). Here, we use a one-dimensional photochemical model to study the effect of disequilibrium chemistry on the observed abundances of H{sub 2}O, CO, CO{sub 2}, and CH{sub 4} in the WASP-12b atmosphere. We consider two cases: one with solar [C]/[O] and another with [C]/[O] = 1.08. The solar case predicts that H{sub 2}O and CO are more abundant than CO{sub 2} and CH{sub 4}, as expected, whereas the high [C]/[O] model shows that CO, C{sub 2}H{sub 2}, and HCN are more abundant. This indicates that the extra carbon from the high [C]/[O] model is in hydrocarbon species. H{sub 2}O photolysis is the dominant disequilibrium mechanism that alters the chemistry at higher altitudes in the solar [C]/[O] case, whereas photodissociation of C{sub 2}H{sub 2} and HCN is significant in the super-solar case. Furthermore, our analysis indicates that C{sub 2}H{sub 2} is the major absorber in the atmosphere of WASP-12b and the absorption features detected near 1.6 and 8 {mu}m may be arising from C{sub 2}H{sub 2} rather than CH{sub 4}. The Hubble Space Telescope's WFC3 can resolve this discrepancy, as C{sub 2}H{sub 2} has absorption between 1.51 and 1.54 {mu}m, while CH{sub 4} does not.

  19. Genetic Variants in IL-12B and IL-27 in the Polish Patients with Systemic Lupus Erythematosus.

    PubMed

    Paradowska-Gorycka, A; Sowinska, A; Stypinska, B; Grobelna, M K; Walczyk, M; Olesinska, M; Piotrowski, P; Jagodzinski, P P

    2016-07-01

    To investigate the potential association between IL-12B and IL-27 gene polymorphisms and systemic lupus erythematosus (SLE), we performed a case-control study based on the Polish population. Patients with SLE and healthy individuals were examined for -6415 CTCTAA/GC (rs17860508) and +1188A/C (rs3212227) in IL-12B and -924A/G (rs153109) and 4730T/C (rs181206) in IL-27 gene polymorphisms using the high-resolution melting method, PCR-RFLP method and TaqMan SNP genotyping assay, respectively. An increased frequency of GC/GC genotype as well as GC allele of the IL-12B rs17860508 was found in patients with SLE, as compared with healthy subjects (P < 0.001). We did not find differences in genotype and allele frequencies of the IL-12B rs3212227 and IL-27 rs153109 and rs181206 variants between patients with SLE and controls. IL-27 haplotype rs181206C/rs153109G indicated higher risk for SLE (P = 0.002), whereas haplotype rs181206T/rs153109G indicated reduced risk for SLE (P = 0.005). The IL-12B rs3212227 A/C polymorphism was associated with the mean value of the platelets (PLT), urea and complement C3 level. Furthermore, IL-12B rs17860508 genetic variant showed correlation with PLT, prothrombin time, international normalized ratio and alkaline phosphatase. Our results revealed that IL-12B rs17860508 and IL-27 haplotype CG are genetic risk factors for SLE and that both IL-12B rs17860508 and rs3212227 predict disease phenotype. PMID:27059274

  20. Discovery of pyrrolo[1,2-b]pyridazine-3-carboxamides as Janus kinase (JAK) inhibitors.

    PubMed

    Duan, James J-W; Lu, Zhonghui; Jiang, Bin; Yang, Bingwei V; Doweyko, Lidia M; Nirschl, David S; Haque, Lauren E; Lin, Shuqun; Brown, Gregory; Hynes, John; Tokarski, John S; Sack, John S; Khan, Javed; Lippy, Jonathan S; Zhang, Rosemary F; Pitt, Sidney; Shen, Guoxiang; Pitts, William J; Carter, Percy H; Barrish, Joel C; Nadler, Steven G; Salter-Cid, Luisa M; McKinnon, Murray; Fura, Aberra; Schieven, Gary L; Wrobleski, Stephen T

    2014-12-15

    A new class of Janus kinase (JAK) inhibitors was discovered using a rationally designed pyrrolo[1,2-b]pyridazine-3-carboxamide scaffold. Preliminary studies identified (R)-(2,2-dimethylcyclopentyl)amine as a preferred C4 substituent on the pyrrolopyridazine core (3b). Incorporation of amino group to 3-position of the cyclopentane ring resulted in a series of JAK3 inhibitors (4g-4j) that potently inhibited IFNγ production in an IL2-induced whole blood assay and displayed high functional selectivity for JAK3-JAK1 pathway relative to JAK2. Further modifications led to the discovery of an orally bioavailable (2-fluoro-2-methylcyclopentyl)amino analogue 5g which is a nanomolar inhibitor of both JAK3 and TYK2, functionally selective for the JAK3-JAK1 pathway versus JAK2, and active in a human whole blood assay. PMID:25453808

  1. A near-infrared transmission spectrum for the warm Saturn HAT-P-12b

    SciTech Connect

    Line, Michael R.; Knutson, Heather; Desert, Jean-Michel; Deming, Drake; Wilkins, Ashlee

    2013-12-01

    We present a Hubble Space Telescope Wide Field Camera-3 (WFC3) transmission spectrum for the transiting exoplanet HAT-P-12b. This warm (1000 K) sub-Saturn-mass planet has a smaller mass and a lower temperature than the hot Jupiters that have been studied so far. We find that the planet's measured transmission spectrum lacks the expected water absorption feature for a hydrogen-dominated atmosphere and is instead best described by a model with high-altitude clouds. Using a frequentist hypothesis testing procedure, we can rule out a hydrogen-dominated cloud-free atmosphere to 4.9σ. When combined with other recent WFC3 studies, our observations suggest that clouds may be common in exoplanetary atmospheres.

  2. Practical synthesis and cytotoxic evaluation of the pyrazino[1,2-b]-isoquinoline ring system.

    PubMed

    Hernández-Vázquez, Eduardo; Miranda, Luis D

    2016-06-01

    A practical three-step protocol for the synthesis of pyrazino[1,2-b]isoquinolines is reported. This approach includes a one-pot parallel cyclization/cyclization parallel process followed by a non-common 6-endo Heck cyclization that transformed previously constructed Ugi adducts into diversely decorated tricyclic systems. Compounds bearing a t-butyl or 2,6-dimethylphenyl substituent showed significant cytotoxic activity. The most active analogue (6p) showed significant activity against HCT-15 and K562 (IC50 = 41.8 ± 3.3 and 57.7 ± 2.1 μM, respectively) with no cytotoxicity against human gingival fibroblasts. PMID:27161451

  3. Discovery of indeno[1,2-b]quinoxaline derivatives as potential anticancer agents.

    PubMed

    Tseng, Chih-Hua; Chen, You-Ren; Tzeng, Cherng-Chyi; Liu, Wangta; Chou, Chon-Kit; Chiu, Chien-Chih; Chen, Yeh-Long

    2016-01-27

    We have synthesized certain indeno[1,2-b]quinoxaline derivatives for antiproliferative evaluation. Among them, 11-{[3-(dimethylamino)propoxy]imino}-N-[3-(dimethylamino) propyl]-11H-indeno[1,2-b]quinoxaline-6-carboxamide (10a) was active against the growth of MDA-MB231, PC-3, and Huh-7 with IC50 values of 0.87 (selectivity index, SI = 36.22), 0.82 (SI = 38.43), and 0.64 μM (SI = 49.23) respectively. Compound 10a was inactive against the growth of normal human fetal lung fibroblast cell line (MRC-5) with an IC50 value of 31.51 μM. Its analogs, 10b and 10c, were also active against the growth of MB231, PC-3, and Huh-7 with IC50 values of <1.0 μM in each case. Our results have also indicated compounds 10a-10c exhibited comparable inhibitory activities against topo I and topo II with the positive compound 2 at a concentration of 10 μM. Mechanism studies indicated that compound 10a induced cell cycle arrest at S phase via activation of caspase-3, -7 and an increase in the protein expression of Bad and Bax but a decrease in expression of Bcl-2 and PARP, which consequently cause cell death. In addition, compound 10a attenuated the levels of phosphorylated Src, Akt-1, and Akt-2 protein levels but did not affect the total protein expression of Akt. We have also implanted human hepatocellular carcinoma cells into the yolk sac of zebrafish larvae and incubated larvae with various concentrations of 10a. Our results of the zebrafish xenograft assay confirmed the anti-tumor effect of 10ain vivo. PMID:26686931

  4. METALS IN THE EXOSPHERE OF THE HIGHLY IRRADIATED PLANET WASP-12b

    SciTech Connect

    Fossati, L.; Haswell, C. A.; Holmes, S.; Kolb, U.; Carter, A. E-mail: C.A.Haswell@open.ac.u E-mail: U.C.Kolb@open.ac.u

    2010-05-10

    We present near-UV transmission spectroscopy of the highly irradiated transiting exoplanet WASP-12b, obtained with the Cosmic Origins Spectrograph on the Hubble Space Telescope. The spectra cover three distinct wavelength ranges: NUVA (2539-2580 A), NUVB (2655-2696 A), and NUVC (2770-2811 A). Three independent methods all reveal enhanced transit depths attributable to absorption by resonance lines of metals in the exosphere of WASP-12b. Light curves of total counts in the NUVA and NUVC wavelength ranges show a detection at a 2.5{sigma} level. We detect extra absorption in the Mg II {lambda}{lambda}2800 resonance line cores at the 2.8{sigma} level. The NUVA, NUVB, and NUVC light curves imply effective radii of 2.69 {+-} 0.24 R {sub J}, 2.18 {+-} 0.18 R {sub J}, and 2.66 {+-} 0.22 R {sub J} respectively, suggesting the planet is surrounded by an absorbing cloud which overfills the Roche lobe. We detect enhanced transit depths at the wavelengths of resonance lines of neutral sodium, tin, and manganese, and at singly ionized ytterbium, scandium, manganese, aluminum, vanadium, and magnesium. We also find the statistically expected number of anomalous transit depths at wavelengths not associated with any known resonance line. Our data are limited by photon noise, but taken as a whole the results are strong evidence for an extended absorbing exosphere surrounding the planet. The NUVA data exhibit an early ingress, contrary to model expectations; we speculate this could be due to the presence of a disk of previously stripped material.

  5. Alginate Lyases from Alginate-Degrading Vibrio splendidus 12B01 Are Endolytic

    PubMed Central

    Badur, Ahmet H.; Jagtap, Sujit Sadashiv; Yalamanchili, Geethika; Lee, Jung-Kul; Zhao, Huimin

    2015-01-01

    Alginate lyases are enzymes that degrade alginate through β-elimination of the glycosidic bond into smaller oligomers. We investigated the alginate lyases from Vibrio splendidus 12B01, a marine bacterioplankton species that can grow on alginate as its sole carbon source. We identified, purified, and characterized four polysaccharide lyase family 7 alginates lyases, AlyA, AlyB, AlyD, and AlyE, from V. splendidus 12B01. The four lyases were found to have optimal activity between pH 7.5 and 8.5 and at 20 to 25°C, consistent with their use in a marine environment. AlyA, AlyB, AlyD, and AlyE were found to exhibit a turnover number (kcat) for alginate of 0.60 ± 0.02 s−1, 3.7 ± 0.3 s−1, 4.5 ± 0.5 s−1, and 7.1 ± 0.2 s−1, respectively. The Km values of AlyA, AlyB, AlyD, and AlyE toward alginate were 36 ± 7 μM, 22 ± 5 μM, 60 ± 2 μM, and 123 ± 6 μM, respectively. AlyA and AlyB were found principally to cleave the β-1,4 bonds between β-d-mannuronate and α-l-guluronate and subunits; AlyD and AlyE were found to principally cleave the α-1,4 bonds involving α-l-guluronate subunits. The four alginate lyases degrade alginate into longer chains of oligomers. PMID:25556193

  6. Deciphering the atmospheric composition of WASP-12b: A comprehensive analysis of its dayside emission

    SciTech Connect

    Stevenson, Kevin B.; Bean, Jacob L.; Madhusudhan, Nikku; Harrington, Joseph

    2014-08-10

    WASP-12b was the first planet reported to have a carbon-to-oxygen ratio (C/O) greater than one in its dayside atmosphere. However, recent work to further characterize its atmosphere and confirm its composition has led to incompatible measurements and divergent conclusions. Additionally, the recent discovery of stellar binary companions ∼1'' from WASP-12 further complicates the analyses and subsequent interpretations. We present a uniform analysis of all available Hubble and Spitzer Space Telescope secondary-eclipse data, including previously unpublished Spitzer measurements at 3.6 and 4.5 μm. The primary controversy in the literature has centered on the value and interpretation of the eclipse depth at 4.5 μm. Our new measurements and analyses confirm the shallow eclipse depth in this channel, as first reported by Campo and collaborators and used by Madhusudhan and collaborators to infer a carbon-rich composition. To explain WASP-12b's observed dayside emission spectrum, we implemented several recent retrieval approaches. We find that when we exclude absorption due to C{sub 2}H{sub 2} and HCN, which are not universally considered in the literature, our models require implausibly large atmospheric CO{sub 2} abundances, regardless of the C/O. By including C{sub 2}H{sub 2} and HCN in our models, we find that a physically plausible carbon-rich solution achieves the best fit to the available photometric and spectroscopic data. In comparison, the best-fit oxygen-rich models have abundances that are inconsistent with the chemical equilibrium expectations for hydrogen-dominated atmospheres and are 670 times less probable. Our best-fit solution is also 7.3 × 10{sup 6} times more probable than an isothermal blackbody model.

  7. Morphometric Analysis of Recognized Genes for Autism Spectrum Disorders and Obesity in Relationship to the Distribution of Protein-Coding Genes on Human Chromosomes.

    PubMed

    McGuire, Austen B; Rafi, Syed K; Manzardo, Ann M; Butler, Merlin G

    2016-01-01

    Mammalian chromosomes are comprised of complex chromatin architecture with the specific assembly and configuration of each chromosome influencing gene expression and function in yet undefined ways by varying degrees of heterochromatinization that result in Giemsa (G) negative euchromatic (light) bands and G-positive heterochromatic (dark) bands. We carried out morphometric measurements of high-resolution chromosome ideograms for the first time to characterize the total euchromatic and heterochromatic chromosome band length, distribution and localization of 20,145 known protein-coding genes, 790 recognized autism spectrum disorder (ASD) genes and 365 obesity genes. The individual lengths of G-negative euchromatin and G-positive heterochromatin chromosome bands were measured in millimeters and recorded from scaled and stacked digital images of 850-band high-resolution ideograms supplied by the International Society of Chromosome Nomenclature (ISCN) 2013. Our overall measurements followed established banding patterns based on chromosome size. G-negative euchromatic band regions contained 60% of protein-coding genes while the remaining 40% were distributed across the four heterochromatic dark band sub-types. ASD genes were disproportionately overrepresented in the darker heterochromatic sub-bands, while the obesity gene distribution pattern did not significantly differ from protein-coding genes. Our study supports recent trends implicating genes located in heterochromatin regions playing a role in biological processes including neurodevelopment and function, specifically genes associated with ASD. PMID:27164088

  8. Morphometric Analysis of Recognized Genes for Autism Spectrum Disorders and Obesity in Relationship to the Distribution of Protein-Coding Genes on Human Chromosomes

    PubMed Central

    McGuire, Austen B.; Rafi, Syed K.; Manzardo, Ann M.; Butler, Merlin G.

    2016-01-01

    Mammalian chromosomes are comprised of complex chromatin architecture with the specific assembly and configuration of each chromosome influencing gene expression and function in yet undefined ways by varying degrees of heterochromatinization that result in Giemsa (G) negative euchromatic (light) bands and G-positive heterochromatic (dark) bands. We carried out morphometric measurements of high-resolution chromosome ideograms for the first time to characterize the total euchromatic and heterochromatic chromosome band length, distribution and localization of 20,145 known protein-coding genes, 790 recognized autism spectrum disorder (ASD) genes and 365 obesity genes. The individual lengths of G-negative euchromatin and G-positive heterochromatin chromosome bands were measured in millimeters and recorded from scaled and stacked digital images of 850-band high-resolution ideograms supplied by the International Society of Chromosome Nomenclature (ISCN) 2013. Our overall measurements followed established banding patterns based on chromosome size. G-negative euchromatic band regions contained 60% of protein-coding genes while the remaining 40% were distributed across the four heterochromatic dark band sub-types. ASD genes were disproportionately overrepresented in the darker heterochromatic sub-bands, while the obesity gene distribution pattern did not significantly differ from protein-coding genes. Our study supports recent trends implicating genes located in heterochromatin regions playing a role in biological processes including neurodevelopment and function, specifically genes associated with ASD. PMID:27164088

  9. Standardized Semantic Markup for Reference Terminologies, Thesauri and Coding Systems: Benefits for distributed E-Health Applications.

    PubMed

    Hoelzer, Simon; Schweiger, Ralf K; Liu, Raymond; Rudolf, Dirk; Rieger, Joerg; Dudeck, Joachim

    2005-01-01

    With the introduction of the ICD-10 as the standard for diagnosis, the development of an electronic representation of its complete content, inherent semantics and coding rules is necessary. Our concept refers to current efforts of the CEN/TC 251 to establish a European standard for hierarchical classification systems in healthcare. We have developed an electronic representation of the ICD-10 with the extensible Markup Language (XML) that facilitates the integration in current information systems or coding software taking into account different languages and versions. In this context, XML offers a complete framework of related technologies and standard tools for processing that helps to develop interoperable applications. PMID:15923766

  10. Fast Coding Unit Encoding Mechanism for Low Complexity Video Coding

    PubMed Central

    Wu, Yueying; Jia, Kebin; Gao, Guandong

    2016-01-01

    In high efficiency video coding (HEVC), coding tree contributes to excellent compression performance. However, coding tree brings extremely high computational complexity. Innovative works for improving coding tree to further reduce encoding time are stated in this paper. A novel low complexity coding tree mechanism is proposed for HEVC fast coding unit (CU) encoding. Firstly, this paper makes an in-depth study of the relationship among CU distribution, quantization parameter (QP) and content change (CC). Secondly, a CU coding tree probability model is proposed for modeling and predicting CU distribution. Eventually, a CU coding tree probability update is proposed, aiming to address probabilistic model distortion problems caused by CC. Experimental results show that the proposed low complexity CU coding tree mechanism significantly reduces encoding time by 27% for lossy coding and 42% for visually lossless coding and lossless coding. The proposed low complexity CU coding tree mechanism devotes to improving coding performance under various application conditions. PMID:26999741

  11. Exoplanet Transit Spectroscopy Using WFC3: WASP-12 b, WASP-17 b, and WASP-19 b

    NASA Technical Reports Server (NTRS)

    Mandell, Avram Max; Haynes, Korey N.; Sinukoff, Evan; Madhusudhan, Nikku; Burrows, Adam; Deming, Drake

    2013-01-01

    We report an analysis of transit spectroscopy of the extrasolar planets WASP-12 b, WASP-17 b, and WASP-19 b using the Wide Field Camera 3 (WFC3) on the Hubble Space Telescope (HST). We analyze the data for a single transit for each planet using a strategy similar, in certain aspects, to the techniques used by Berta et al., but we extend their methodology to allow us to correct for channel- or wavelength-dependent instrumental effects by utilizing the band-integrated time series and measurements of the drift of the spectrum on the detector over time. We achieve almost photon-limited results for individual spectral bins, but the uncertainties in the transit depth for the band-integrated data are exacerbated by the uneven sampling of the light curve imposed by the orbital phasing of HST's observations. Our final transit spectra for all three objects are consistent with the presence of a broad absorption feature at 1.4 nano meter most likely due to water. However, the amplitude of the absorption is less than that expected based on previous observations with Spitzer, possibly due to hazes absorbing in the NIR or non-solar compositions. The degeneracy of models with different compositions and temperature structures combined with the low amplitude of any features in the data preclude our ability to place unambiguous constraints on the atmospheric composition without additional observations with WFC3 to improve the signal-to-noise ratio and/or a comprehensive multi-wavelength analysis.

  12. WASP-12b AND HAT-P-8b are members of triple star systems

    SciTech Connect

    Bechter, Eric B.; Crepp, Justin R.; Matthews, Christopher T.; Ngo, Henry; Knutson, Heather A.; Batygin, Konstantin; Johnson, John Asher; Hinkley, Sasha; Muirhead, Philip S.; Montet, Benjamin T.; Morton, Timothy D.; Howard, Andrew W.

    2014-06-10

    We present high spatial resolution images that demonstrate that WASP-12b and HAT-P-8b orbit the primary stars of hierarchical triple star systems. In each case, two distant companions with colors and brightnesses consistent with M dwarfs co-orbit the hot Jupiter planet host as well as one another. Our adaptive optics images spatially resolve the secondary around WASP-12, previously identified by Bergfors et al. and Crossfield et al. into two distinct sources separated by 84.3 ± 0.6 mas (21 ± 3 AU). We find that the secondary to HAT-P-8, also identified by Bergfors et al., is in fact composed of two stars separated by 65.3 ± 0.5 mas (15 ± 1 AU). Our follow-up observations demonstrate physical association through common proper motion. HAT-P-8 C has a particularly low mass, which we estimate to be 0.18 ± 0.02 M {sub ☉} using photometry. Due to their hierarchy, WASP-12 BC and HAT-P-8 BC will enable the first dynamical mass determination for hot Jupiter stellar companions. These previously well studied planet hosts now represent higher-order multi-star systems with potentially complex dynamics, underscoring the importance of diffraction-limited imaging and providing additional context for understanding the migrant population of transiting hot Jupiters.

  13. Human Exploration on the Moon, Mars and NEOs: PEX.2/ICEUM12B

    NASA Astrophysics Data System (ADS)

    Foing, Bernard H.

    2016-07-01

    The session COSPAR-16-PEX.2: "Human Exploration on the Moon, Mars and NEOs", co-sponsored by Commissions B, F will include solicited and contributed talks and poster/interactive presentations. It will also be part of the 12th International Conference on Exploration and Utilisation of the Moon ICEUM12B from the ILEWG ICEUM series started in 1994. It will address various themes and COSPAR communities: - Sciences (of, on, from) the Moon enabled by humans - Research from cislunar and libration points - From robotic villages to international lunar bases - Research from Mars & NEOs outposts - Humans to Phobos/Deimos, Mars and NEOS - Challenges and preparatory technologies, field research operations - Human and robotic partnerships and precursor missions - Resource utilisation, life support and sustainable exploration - Stakeholders for human exploration One half-day session will be dedicated to a workshop format and meetings/reports of task groups: Science, Technology, Agencies, Robotic village, Human bases, Society & Commerce, Outreach, Young Explorers. COSPAR has provided through Commissions, Panels and Working Groups (such as ILEWG, IMEWG) an international forum for supporting and promoting the robotic and human exploration of the Moon, Mars and NEOS. Proposed sponsors : ILEWG, ISECG, IKI, ESA, NASA, DLR, CNES, ASI, UKSA, JAXA, ISRO, SRON, CNSA, SSERVI, IAF, IAA, Lockheed Martin, Google Lunar X prize, UNOOSA

  14. Time-Dependent Distribution Functions in C-Mod Calculated with the CQL3D-Hybrid-FOW, AORSA Full-Wave, and DC Lorentz Codes

    NASA Astrophysics Data System (ADS)

    Harvey, R. W. (Bob); Petrov, Yu. V.; Jaeger, E. F.; Berry, L. A.; Bonoli, P. T.; Bader, A.

    2015-11-01

    A time-dependent simulation of C-Mod pulsed ICRF power is made calculating minority hydrogen ion distribution functions with the CQL3D-Hybrid-FOW finite-orbit-width Fokker-Planck code. ICRF fields are calculated with the AORSA full wave code, and RF diffusion coefficients are obtained from these fields using the DC Lorentz gyro-orbit code. Prior results with a zero-banana-width simulation using the CQL3D/AORSA/DC time-cycles showed a pronounced enhancement of the H distribution in the perpendicular velocity direction compared to results obtained from Stix's quasilinear theory, in general agreement with experiment. The present study compares the new FOW results, including relevant gyro-radius effects, to determine the importance of these effects on the the NPA synthetic diagnostic time-dependence. The new NPA results give increased agreement with experiment, particularly in the ramp-down time after the ICRF pulse. Funded, through subcontract with Massachusetts Institute of Technology, by USDOE sponsored SciDAC Center for Simulation of Wave-Plasma Interactions.

  15. Synthesis, Photochemical Properties, and Cytotoxicities of 2H-Naphtho[1,2-b]pyran and Its Photodimers.

    PubMed

    Ota, Motohiro; Sasamori, Takahiro; Tokitoh, Norihiro; Onodera, Takefumi; Mizushina, Yoshiyuki; Kuramochi, Kouji; Tsubaki, Kazunori

    2015-06-01

    A 2H-naphtho[1,2-b]pyran, prepared by dimerization of 2-bromo-3-methyl-1,4-naphthoquinone and O-methylation, readily undergoes solid-state [2 + 2] photodimerization to give a photodimer in excellent yield and with excellent selectivity. Retro [2 + 2] cycloaddition can be achieved by irradiation of a solution of the photodimer in chloroform. Interestingly, the 2H-naphtho[1,2-b]pyran dimerizes with a skeletal rearrangement to afford 2,5-dihydro-1-benzoxepin dimers upon irradiation in methanol or via irradiation with hexamethylditin. Furthermore, treatment of the resulting dimers with triethylamine regenerates the 2H-naphtho[1,2-b]pyran monomer. Significant differences in the color, fluorescence, and cytotoxic properties of the monomer and dimers were observed. PMID:25927340

  16. New imidazo[1,2-b]pyrazoles as anticancer agents: synthesis, biological evaluation and structure activity relationship analysis.

    PubMed

    Grosse, Sandrine; Mathieu, Véronique; Pillard, Christelle; Massip, Stéphane; Marchivie, Mathieu; Jarry, Christian; Bernard, Philippe; Kiss, Robert; Guillaumet, Gérald

    2014-09-12

    Synthesis and functionalization strategies of the imidazo[1,2-b]pyrazole core were developed giving a rapid access to three series of novel imidazo[1,2-b]pyrazole type derivatives: C-2/C-6/C-7 trisubstituted, C-2/C-3/C-6 tri(hetero)arylated and C-2/C-3/C-6/C-7 tetrasubstituted imidazo[1,2-b]pyrazoles. 39 of the synthetized products were evaluated for in vitro anticancer activity using the MTT colorimetric assay against 5 human and 1 murine cancer cell lines. Promising in vitro growth inhibitory activities were exhibited by some of the target compounds. Of the 39 evaluated products, 4 displayed an IC50 ≤ 10 μM in the 6 cell lines analyzed (compounds 4d, 4g, 9a, 11a). A structure activity relationship analysis is also reported in this paper. PMID:25064349

  17. Analysis of SRM model nozzle calibration test data in support of IA12B, IA12C and IA36 space shuttle launch vehicle aerodynamics tests

    NASA Technical Reports Server (NTRS)

    Baker, L. R., Jr.; Tevepaugh, J. A.; Penny, M. M.

    1973-01-01

    Variations of nozzle performance characteristics of the model nozzles used in the Space Shuttle IA12B, IA12C, IA36 power-on launch vehicle test series are shown by comparison between experimental and analytical data. The experimental data are nozzle wall pressure distributions and schlieren photographs of the exhaust plume shapes. The exhaust plume shapes were simulated experimentally with cold flow while the analytical data were generated using a method-of-characteristics solution. Exhaust plume boundaries, boundary shockwave locations and nozzle wall pressure measurements calculated analytically agree favorably with the experimental data from the IA12C and IA36 test series. For the IA12B test series condensation was suspected in the exhaust plumes at the higher pressure ratios required to simulate the prototype plume shapes. Nozzle calibration tests for the series were conducted at pressure ratios where condensation either did not occur or if present did not produce a noticeable effect on the plume shapes. However, at the pressure ratios required in the power-on launch vehicle tests condensation probably occurs and could significantly affect the exhaust plume shapes.

  18. Impact of Heat Shock Protein A 12B Overexpression on Spinal Astrocyte Survival Against Oxygen-Glucose-Serum Deprivation/Restoration in Primary Cultured Astrocytes.

    PubMed

    Xia, Xun; Ma, Yuan; Yang, Li-Bin; Cheng, Jing-Ming; Yang, Tao; Fan, Ke-Xia; Li, Yun-Ming; Liu, En-Yu; Cheng, Lin; Huang, Hai-Dong; Gu, Jian-Wen; Kuang, Yong-Qin

    2016-08-01

    Heat shock protein A 12B (HSPA12B) is a newly discovered member of the heat shock protein 70 family. Preclinical evidence indicates that HSPA12B helps protect the brain from ischemic injury, although its specific function remains unclear. The aim of this study is to investigate whether HSPA12B overexpression can protect astrocytes from oxygen-glucose-serum deprivation/restoration (OGD/R) injury. We analyzed the effects of HSPA12B overexpression on spinal cord ischemia-reperfusion injury and spinal astrocyte survival. After ischemia-reperfusion injury, we found that HSPA12B overexpression decreased spinal cord water content and infarct volume. MTT assay showed that HSPA12B overexpression increased astrocyte survival after OGD/R treatment. Flow cytometry results showed a marked inhibition of OGD/R-induced astrocyte apoptosis. Western blot assay showed that HSPA12B overexpression significantly increased regulatory protein B-cell lymphocyte 2 (Bcl-2) levels, whereas it decreased expression of the Bax protein, which forms a heterodimer with Bcl-2. Measurements of the level of activation of caspase-3 by Caspase-Glo®3/7 Assay kit showed that HSPA12B overexpression markedly inhibited caspase-3 activation. Notably, we demonstrated that the effects of HSPA12B on spinal astrocyte survival depended on activation of the PI3K/Akt signal pathway. These findings indicate that HSPA12B protects against spinal cord ischemia-reperfusion injury and may represent a potential treatment target. PMID:27179807

  19. Exoplanet Transit Spectroscopy Using WFC3: WASP-12b, WASP-17b, and WASP-19b

    NASA Technical Reports Server (NTRS)

    Mandell, Avi M.; Haynes, Korey; Sinukoff, Evan; Madhusudhan, Nikku; Burrows, Adam; Deming, Drake

    2013-01-01

    We report an analysis of transit spectroscopy of the extrasolar planets WASP-12 b, WASP-17 b, and WASP-19 b using the Wide Field Camera 3 (WFC3) on the Hubble Space Telescope (HST). We analyze the data for a single transit for each planet using a strategy similar, in certain aspects, to the techniques used by Berta et al., but we extend their methodology to allow us to correct for channel- or wavelength-dependent instrumental effects by utilizing the band-integrated time series and measurements of the drift of the spectrum on the detector over time. We achieve almost photon-limited results for individual spectral bins, but the uncertainties in the transit depth for the band-integrated data are exacerbated by the uneven sampling of the light curve imposed by the orbital phasing of HST's observations. Our final transit spectra for all three objects are consistent with the presence of a broad absorption feature at 1.4 microns most likely due to water. However, the amplitude of the absorption is less than that expected based on previous observations with Spitzer, possibly due to hazes absorbing in the NIR or non-solar compositions. The degeneracy of models with different compositions and temperature structures combined with the low amplitude of any features in the data preclude our ability to place unambiguous constraints on the atmospheric composition without additional observations with WFC3 to improve the signal-to-noise ratio and/or a comprehensive multi-wavelength analysis. Key words: planetary systems - techniques: photometric - techniques: spectroscopic

  20. Exoplanet transit spectroscopy using WFC3: WASP-12 b, WASP-17 b, and WASP-19 b

    SciTech Connect

    Mandell, Avi M.; Haynes, Korey; Sinukoff, Evan; Madhusudhan, Nikku; Burrows, Adam; Deming, Drake

    2013-12-20

    We report an analysis of transit spectroscopy of the extrasolar planets WASP-12 b, WASP-17 b, and WASP-19 b using the Wide Field Camera 3 (WFC3) on the Hubble Space Telescope (HST). We analyze the data for a single transit for each planet using a strategy similar, in certain aspects, to the techniques used by Berta et al., but we extend their methodology to allow us to correct for channel- or wavelength-dependent instrumental effects by utilizing the band-integrated time series and measurements of the drift of the spectrum on the detector over time. We achieve almost photon-limited results for individual spectral bins, but the uncertainties in the transit depth for the band-integrated data are exacerbated by the uneven sampling of the light curve imposed by the orbital phasing of HST's observations. Our final transit spectra for all three objects are consistent with the presence of a broad absorption feature at 1.4 μm most likely due to water. However, the amplitude of the absorption is less than that expected based on previous observations with Spitzer, possibly due to hazes absorbing in the NIR or non-solar compositions. The degeneracy of models with different compositions and temperature structures combined with the low amplitude of any features in the data preclude our ability to place unambiguous constraints on the atmospheric composition without additional observations with WFC3 to improve the signal-to-noise ratio and/or a comprehensive multi-wavelength analysis.

  1. Mycobacterium tuberculosis Infection Induces HDAC1-Mediated Suppression of IL-12B Gene Expression in Macrophages.

    PubMed

    Chandran, Aneesh; Antony, Cecil; Jose, Leny; Mundayoor, Sathish; Natarajan, Krishnamurthy; Kumar, R Ajay

    2015-01-01

    Downregulation of host gene expression is one of the many strategies employed by intracellular pathogens such as Mycobacterium tuberculosis (MTB) to survive inside the macrophages and cause disease. The underlying molecular mechanism behind the downregulation of host defense gene expression is largely unknown. In this study we explored the role of histone deacetylation in macrophages in response to infection by virulent MTB H37Rv in manipulating host gene expression. We show a significant increase in the levels of HDAC1 with a concomitant and marked reduction in the levels of histone H3-acetylation in macrophages containing live, but not killed, virulent MTB. Additionally, we show that HDAC1 is recruited to the promoter of IL-12B in macrophages infected with live, virulent MTB, and the subsequent hypoacetylation of histone H3 suppresses the expression of this gene which plays a key role in initiating Th1 responses. By inhibiting immunologically relevant kinases, and by knockdown of crucial transcriptional regulators, we demonstrate that protein kinase-A (PKA), CREB, and c-Jun play an important role in regulating HDAC1 level in live MTB-infected macrophages. By chromatin immunoprecipitation (ChIP) analysis, we prove that HDAC1 expression is positively regulated by the recruitment of c-Jun to its promoter. Knockdown of HDAC1 in macrophages significantly reduced the survival of intracellular MTB. These observations indicate a novel HDAC1-mediated epigenetic modification induced by live, virulent MTB to subvert the immune system to survive and replicate in the host. PMID:26697414

  2. Modeling of Dose Distribution for a Proton Beam Delivering System with the use of the Multi-Particle Transport Code 'Fluka'

    SciTech Connect

    Mumot, Marta; Agapov, Alexey

    2007-11-26

    We have developed a new delivering system for hadron therapy which uses a multileaf collimator and a range shifter. We simulate our delivering beam system with the multi-particle transport code 'Fluka'. From these simulations we obtained information about the dose distributions, about stars generated in the delivering system elements and also information about the neutron flux. All the informations obtained were analyzed from the point of view of radiation protection, homogeneity of beam delivery to patient body, and also in order to improve some modifiers used.

  3. Pacific Missile Test Center Information Resources Management Organization (code 0300): The ORACLE client-server and distributed processing architecture

    SciTech Connect

    Beckwith, A. L.; Phillips, J. T.

    1990-06-10

    Computing architectures using distributed processing and distributed databases are increasingly becoming considered acceptable solutions for advanced data processing systems. This is occurring even though there is still considerable professional debate as to what truly'' distributed computing actually is and despite the relative lack of advanced relational database management software (RDBMS) capable of meeting database and system integrity requirements for developing reliable integrated systems. This study investigates the functionally of ORACLE data base management software that is performing distributed processing between a MicroVAX/VMS minicomputer and three MS-DOS-based microcomputers. The ORACLE database resides on the MicroVAX and is accessed from the microcomputers with ORACLE SQL*NET, DECnet, and ORACLE PC TOOL PACKS. Data gathered during the study reveals that there is a demonstrable decrease in CPU demand on the MicroVAX, due to distributed processing'', when the ORACLE PC Tools are used to access the database as opposed to database access from dumb'' terminals. Also discovered were several hardware/software constraints that must be considered in implementing various software modules. The results of the study indicate that this distributed data processing architecture is becoming sufficiently mature, reliable, and should be considered for developing applications that reduce processing on central hosts. 33 refs., 2 figs.

  4. 17 CFR 270.12b-1 - Distribution of shares by registered open-end management investment company.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... the printing and mailing of sales literature; (b) A registered, open-end management investment company... company's board of directors, and the directors shall review, at least quarterly, a written report of...

  5. 17 CFR 270.12b-1 - Distribution of shares by registered open-end management investment company.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... the printing and mailing of sales literature; (b) A registered, open-end management investment company... company's board of directors, and the directors shall review, at least quarterly, a written report of...

  6. 17 CFR 270.12b-1 - Distribution of shares by registered open-end management investment company.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... the printing and mailing of sales literature; (b) A registered, open-end management investment company... company's board of directors, and the directors shall review, at least quarterly, a written report of...

  7. 17 CFR 270.12b-1 - Distribution of shares by registered open-end management investment company.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... the printing and mailing of sales literature; (b) A registered, open-end management investment company... company's board of directors, and the directors shall review, at least quarterly, a written report of...

  8. 17 CFR 270.12b-1 - Distribution of shares by registered open-end management investment company.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... the printing and mailing of sales literature; (b) A registered, open-end management investment company... company's board of directors, and the directors shall review, at least quarterly, a written report of...

  9. Statistical Electronic Structure Calibration Study of the CCSD(T*)-F12b Method for Atomization Energies.

    PubMed

    Feller, David

    2015-07-16

    In the explicitly correlated CCSD(T)-F12b coupled cluster method only the singles and doubles component of the energy benefits from inclusion of terms involving the interelectronic distance. Consequently, only that component exhibits accelerated convergence with respect to the 1-particle basis set. The smaller perturbative triples component converges at the same rate as the corresponding piece in standard CCSD(T). With the alternative CCSD(T*)-F12b method the triples correlation energy is scaled up by the ratio of explicitly correlated to standard second-order perturbation theory correlation energies in an attempt to better approximate the basis set limit. An extensive and diverse 212 molecule collection of reference total atomization energies, developed with large basis sets (up to aug-cc-pV9Z in some cases) and standard CCSD(T), was used to calibrate the performance of CCSD(T*). Scaling of the (T) energy led to improved results relative to raw F12b values but only provided a statistical advantage over previously proposed complete basis set extrapolation techniques for the smallest basis sets. With larger sets, scaling (T) produced noticeably poorer results, sometimes by a factor of 2. In agreement with earlier studies, basis set extrapolated CCSD(T)-F12b was found to exhibit a systematic bias toward overestimating reference atomization energies with an error that increases with the magnitude of the valence correlation energy. PMID:25730633

  10. IS IL12B A POTENTIAL GENETIC TARGET FOR THE PREVENTION OF TYPE 1 DIABETES THROUGH DIETARY INTERVENTION?

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Type 1 diabetes mellitus (T1D) results from decreased insulin production. Its clinical expression is the result of an array of genetic and environmental factors. The IL12B gene could be one of the loci implicated in the genetic susceptibility of T1D. Thus, this genetic predisposition could be modula...

  11. Complete Genome Sequence of Listeria monocytogenes Strain DPC6895, a Serotype 1/2b Isolate from Bovine Raw Milk.

    PubMed

    Casey, Aidan; McAuliffe, Olivia; Coffey, Aidan; Hunt, Karen; Fanning, Seamus; Fox, Edward; Jordan, Kieran

    2015-01-01

    Listeria monocytogenes is a foodborne pathogen and is the causative agent of listeriosis among humans and animals. The draft genome sequence of L. monocytogenes DPC6895, a serotype 1/2b strain isolated from the raw milk of a cow with subclinical bovine mastitis, is reported. PMID:26067969

  12. Integral measurement of the 12C(n, p)12B reaction up to 10 GeV

    NASA Astrophysics Data System (ADS)

    Žugec, P.; Colonna, N.; Bosnar, D.; Ventura, A.; Mengoni, A.; Altstadt, S.; Andrzejewski, J.; Audouin, L.; Barbagallo, M.; Bécares, V.; Bečvář, F.; Belloni, F.; Berthoumieux, E.; Billowes, J.; Boccone, V.; Brugger, M.; Calviani, M.; Calviño, F.; Cano-Ott, D.; Carrapiço, C.; Cerutti, F.; Chiaveri, E.; Chin, M.; Cortés, G.; Cortés-Giraldo, M. A.; Cosentino, L.; Diakaki, M.; Domingo-Pardo, C.; Dressler, R.; Duran, I.; Eleftheriadis, C.; Ferrari, A.; Finocchiaro, P.; Fraval, K.; Ganesan, S.; García, A. R.; Giubrone, G.; Gómez-Hornillos, M. B.; Gonçalves, I. F.; González-Romero, E.; Griesmayer, E.; Guerrero, C.; Gunsing, F.; Gurusamy, P.; Heinitz, S.; Jenkins, D. G.; Jericha, E.; Käppeler, F.; Karadimos, D.; Kivel, N.; Kokkoris, M.; Krtička, M.; Kroll, J.; Langer, C.; Lederer, C.; Leeb, H.; Leong, L. S.; Lo Meo, S.; Losito, R.; Manousos, A.; Marganiec, J.; Martínez, T.; Massimi, C.; Mastinu, P.; Mastromarco, M.; Mendoza, E.; Milazzo, P. M.; Mingrone, F.; Mirea, M.; Mondalaers, W.; Musumarra, A.; Paradela, C.; Pavlik, A.; Perkowski, J.; Plompen, A.; Praena, J.; Quesada, J.; Rauscher, T.; Reifarth, R.; Riego, A.; Roman, F.; Rubbia, C.; Sarmento, R.; Saxena, A.; Schillebeeckx, P.; Schmidt, S.; Schumann, D.; Tagliente, G.; Tain, J. L.; Tarrío, D.; Tassan-Got, L.; Tsinganis, A.; Valenta, S.; Vannini, G.; Variale, V.; Vaz, P.; Versaci, R.; Vermeulen, M. J.; Vlachoudis, V.; Vlastou, R.; Wallner, A.; Ware, T.; Weigand, M.; Weiß, C.; Wright, T.

    2016-04-01

    The integral measurement of the 12C(n, p)12B reaction was performed at the neutron time-of-flight facility n_TOF at CERN. The total number of 12B nuclei produced per neutron pulse of the n_TOF beam was determined using the activation technique in combination with a time-of-flight technique. The cross section is integrated over the n_TOF neutron energy spectrum from reaction threshold at 13.6MeV to 10GeV. Having been measured up to 1GeV on basis of the 235U(n, f ) reaction, the neutron energy spectrum above 200MeV has been re-evaluated due to the recent extension of the cross section reference for this particular reaction, which is otherwise considered a standard up to 200MeV. The results from the dedicated GEANT4 simulations have been used to evaluate the neutron flux from 1GeV up to 10GeV. The experimental results related to the 12C(n, p)12B reaction are compared with the evaluated cross sections from major libraries and with the predictions of different GEANT4 models, which mostly underestimate the 12B production. On the contrary, a good reproduction of the integral cross section derived from measurements is obtained with TALYS-1.6 calculations, with optimized parameters.

  13. Ultrasharp magnetization steps in the antiferromagnetic itinerant-electron system LaF e12B6

    NASA Astrophysics Data System (ADS)

    Diop, L. V. B.; Isnard, O.; Rodríguez-Carvajal, J.

    2016-01-01

    The remarkable intrinsic magnetic properties of the LaF e12B6 compound have been studied by neutron powder diffraction (NPD) and magnetization measurements. The NPD measurement reveals that LaF e12B6 exhibits an antiferromagnetic (AFM) structure that can be described with a magnetic propagation vector of (¼, ¼, ¼) below TN. In the amplitude-modulated model used for the refinement, the Fe magnetic moments are confined to the a b plane with a maximum value of 0.43 μB at 1.5 K. It is shown that the AFM state can be transformed to a ferromagnetic (FM) state via a field-induced first-order transition accompanied with a huge magnetic hysteresis. The LaF e12B6 compound is not only the unique stable R F e12B6 phase, along the rare-earth R series but also presents unique magnetic behavior for a purely 3 d itinerant electron system, including particularly low ordering temperature TN=36 K , remarkably small Fe moment, unusual amplitude-modulated magnetic arrangement, and a multicritical point in the magnetic phase diagram. In addition, we reveal that at 2 K, the AFM-FM transition is abrupt, leading to a large increase of the Fe magnetic moment up to 1.55 μB ; the magnetization curve presents ultrasharp steps, giving rise to an unusual staircaselike behavior.

  14. prdm12b specifies the p1 progenitor domain and reveals a role for V1 interneurons in swim movements.

    PubMed

    Zannino, Denise A; Downes, Gerald B; Sagerström, Charles G

    2014-06-15

    Proper functioning of the vertebrate central nervous system requires the precise positioning of many neuronal cell types. This positioning is established during early embryogenesis when gene regulatory networks pattern the neural tube along its anteroposterior and dorsoventral axes. Dorsoventral patterning of the embryonic neural tube gives rise to multiple progenitor cell domains that go on to differentiate unique classes of neurons and glia. While the genetic program is reasonably well understood for some lineages, such as ventrally derived motor neurons and glia, other lineages are much less characterized. Here we show that prdm12b, a member of the PR domain containing-family of transcriptional regulators, is expressed in the p1 progenitor domain of the zebrafish neural tube in response to Sonic Hedgehog signaling. We find that disruption of prdm12b function leads to dorsal expansion of nkx6.1 expression and loss of p1-derived eng1b-expressing V1 interneurons, while the adjacent p0 and p2 domains are unaffected. We also demonstrate that prdm12b-deficient fish exhibit an abnormal touch-evoked escape response with excessive body contractions and a prolonged response time, as well as an inability to coordinate swimming movements, thereby revealing a functional role for V1 interneurons in locomotor circuits. We conclude that prdm12b is required for V1 interneuron specification and that these neurons control swimming movements in zebrafish. PMID:24631215

  15. prdm12b specifies the p1 progenitor domain and reveals a role for V1 interneurons in swim movements

    PubMed Central

    Zannino, Denise A.; Downes, Gerald B.; Sagerström, Charles G.

    2014-01-01

    Proper functioning of the vertebrate central nervous system requires the precise positioning of many neuronal cell types. This positioning is established during early embryogenesis when gene regulatory networks pattern the neural tube along its anteroposterior and dorsoventral axes. Dorsoventral patterning of the embryonic neural tube gives rise to multiple progenitor cell domains that go on to differentiate unique classes of neurons and glia. While the genetic program is reasonably well understood for some lineages, such as ventrally derived motor neurons and glia, other lineages are much less characterized. Here we show that prdm12b, a member of the PR domain containing-family of transcriptional regulators, is expressed in the p1 progenitor domain of the zebrafish neural tube in response to Sonic Hedgehog signaling. We find that disruption of prdm12b function leads to dorsal expansion of nkx6.1 expression and loss of p1-derived eng1b-expressing V1 interneurons, while the adjacent p0 and p2 domains are unaffected. We also demonstrate that prdm12b-deficient fish exhibit an abnormal touch-evoked escape response with excessive body contractions and a prolonged response time, as well as an inability to coordinate swimming movements, thereby revealing a functional role for V1 interneurons in locomotor circuits. We conclude that prdm12b is required for V1 interneuron specification and that these neurons control swimming movements in zebrafish. PMID:24631215

  16. Cloning, Expression, and Characterization of a Thermophilic Endoglucanase, AcCel12B from Acidothermus cellulolyticus 11B

    PubMed Central

    Wang, Junling; Gao, Gui; Li, Yuwei; Yang, Liangzhen; Liang, Yanli; Jin, Hanyong; Han, Weiwei; Feng, Yan; Zhang, Zuoming

    2015-01-01

    The gene ABK52392 from the thermophilic bacterium Acidothermus cellulolyticus 11B was predicted to be endoglucanase and classified into glycoside hydrolase family 12. ABK52392 encodes a protein containing a catalytic domain and a carbohydrate binding module. ABK52392 was cloned and functionally expressed in Escherichia coli. After purification by Ni-NTA agarose affinity chromatography and Q-Sepharose® Fast Flow chromatography, the properties of the recombinant protein (AcCel12B) were characterized. AcCel12B exhibited optimal activity at pH 4.5 and 75 °C. The half-lives of AcCel12B at 60 and 70 °C were about 90 and 2 h, respectively, under acidic conditions. The specific hydrolytic activities of AcCel12B at 70 °C and pH 4.5 for sodium carboxymethylcellulose (CMC) and regenerated amorphous cellulose (RAC) were 118.3 and 104.0 U·mg−1, respectively. The Km and Vmax of AcCel12B for CMC were 25.47 mg·mL−1 and 131.75 U·mg−1, respectively. The time course of hydrolysis for RAC was investigated by measuring reducing ends in the soluble and insoluble phases. The total hydrolysis rate rapidly decreased after the early stage of incubation and the generation of insoluble reducing ends decreased earlier than that of soluble reducing ends. High thermostability of the cellulase indicates its potential commercial significance and it could be exploited for industrial application in the future. PMID:26506341

  17. Transmission spectroscopy of the hot Jupiter WASP-12b from 0.7 to 5 μm

    SciTech Connect

    Stevenson, Kevin B.; Bean, Jacob L.; Seifahrt, Andreas; Kreidberg, Laura; Désert, Jean-Michel; Madhusudhan, Nikku; Bergmann, Marcel; Homeier, Derek

    2014-06-01

    Since the first report of a potentially non-solar carbon-to-oxygen ratio (C/O) in its dayside atmosphere, the highly irradiated exoplanet WASP-12b has been under intense scrutiny and the subject of many follow-up observations. Additionally, the recent discovery of stellar binary companions ∼1'' from WASP-12 has obfuscated interpretation of the observational data. Here we present new ground-based multi-object transmission-spectroscopy observations of WASP-12b that we acquired over two consecutive nights in the red optical with Gemini-N/GMOS. After correcting for the influence of WASP-12's stellar companions, we find that these data rule out a cloud-free H{sub 2} atmosphere with no additional opacity sources. We detect features in the transmission spectrum that may be attributed to metal oxides (such as TiO and VO) for an O-rich atmosphere or to metal hydrides (such as TiH) for a C-rich atmosphere. We also reanalyzed NIR transit-spectroscopy observations of WASP-12b from HST/WFC3 and broadband transit photometry from Warm Spitzer. We attribute the broad spectral features in the WFC3 data to either H{sub 2}O or CH{sub 4} and HCN for an O-rich or C-rich atmosphere, respectively. The Spitzer data suggest shallower transit depths than the models predict at infrared wavelengths, albeit at low statistical significance. A multi-instrument, broad-wavelength analysis of WASP-12b suggests that the transmission spectrum is well approximated by a simple Rayleigh scattering model with a planet terminator temperature of 1870 ± 130 K. We conclude that additional high-precision data and isolated spectroscopic measurements of the companion stars are required to place definitive constraints on the composition of WASP-12b's atmosphere.

  18. Site-Directed Mutagenesis of a Hyperthermophilic Endoglucanase Cel12B from Thermotoga maritima Based on Rational Design

    PubMed Central

    Zhang, Jinfeng; Shi, Hao; Xu, Linyu; Zhu, Xiaoyan; Li, Xiangqian

    2015-01-01

    To meet the demand for the application of high activity and thermostable cellulases in the production of new-generation bioethanol from nongrain-cellulose sources, a hyperthermostable β-1,4-endoglucase Cel12B from Thermotoga maritima was selected for further modification by gene site-directed mutagenesis method in the present study, based on homology modeling and rational design. As a result, two recombinant enzymes showed significant improvement in enzyme activity by 77% and 87%, respectively, higher than the parental enzyme TmCel12B. Furthermore, the two mutants could retain 80% and 90.5% of their initial activity after incubation at 80°C for 8 h, while only 45% for 5 h to TmCel12B. The Km and Vmax of the two recombinant enzymes were 1.97±0.05 mM, 4.23±0.15 μmol·mg-1·min-1 of TmCel12B-E225H-K207G-D37V, and 2.97±0.12 mM, 3.15±0.21 μmol·mg-1·min-1 of TmCel12B-E225H-K207G, respectively, when using CMC-Na as the substrate. The roles of the mutation sites were also analyzed and evaluated in terms of electron density, hydrophobicity of the modeled protein structures. The recombinant enzymes may be used in the hydrolysis of cellulose at higher temperature in the future. It was concluded that the gene mutagenesis approach of a certain active residues may effectively improve the performance of cellulases for the industrial applications and contribute to the study the thermostable mechanism of thermophilic enzymes. PMID:26218520

  19. Molecular cloning of the cDNA coding for mouse aldehyde oxidase: tissue distribution and regulation in vivo by testosterone.

    PubMed Central

    Kurosaki, M; Demontis, S; Barzago, M M; Garattini, E; Terao, M

    1999-01-01

    The cDNA coding for mouse aldehyde oxidase (AO), a molybdoflavoprotein, has been isolated and characterized. The cDNA is 4347 nt long and consists of an open reading frame predicting a polypeptide of 1333 amino acid residues, with 5' and 3' untranslated regions of 13 and 335 nt respectively. The apparent molecular mass of the translation product in vitro derived from the corresponding cRNA is consistent with that of the monomeric subunit of the AO holoenzyme. The cDNA codes for a catalytically active form of AO, as demonstrated by transient transfection experiments conducted in the HC11 mouse mammary epithelial cell line. The deduced primary structure of the AO protein contains consensus sequences for two distinct 2Fe-2S redox centres and a molybdopterin-binding site. The amino acid sequence of the mouse AO has a high degree of similarity with the human and bovine counterparts, and a significant degree of relatedness to AO proteins of plant origin. Northern blot and in situ hybridization analyses demonstrate that hepatocytes, cardiocytes, lung endothelial or epithelial cells and oesophagus epithelial cells express high levels of AO mRNA. In the various tissues and organs considered, the level of AO mRNA expression is not strictly correlated with the amount of the corresponding protein, suggesting that the synthesis of the AO enzyme is under translational or post-translational control. In addition, we observed sex-related regulation of AO protein synthesis. In the liver of male animals, despite similar amounts of AO mRNA, the levels of the AO enzyme and corresponding polypeptide are significantly higher than those in female animals. Treatment of female mice with testosterone increases the amounts of AO mRNA and of the relative translation product to levels similar to those in male animals. PMID:10377246

  20. Distribution and cellular localization of mRNA coding for 5-HT1A receptor in the rat brain: correlation with receptor binding.

    PubMed

    Pompeiano, M; Palacios, J M; Mengod, G

    1992-02-01

    In order to localize the cells expressing 5-HT1A receptors in the rat brain, we used in situ hybridization histochemistry to visualize the distribution of the mRNA coding for 5-HT1A receptors. Oligonucleotides derived from different parts of the coding region of the rat 5-HT1A receptor gene were used as hybridization probes. 5-HT1A binding sites were visualized on consecutive sections by receptor autoradiography using 3H-8-hydroxy-2-(di-n-propylamino)tetralin as ligand. The highest levels of hybridization were observed in the dorsal raphe nucleus, septum, hippocampus, entorhinal cortex, and interpeduncular nucleus. Positive hybridization signals were also present in other areas, such as the olfactory bulb; cerebral cortex; some thalamic and hypothalamic nuclei; several nuclei of the brainstem, including all the remaining raphe nuclei, nucleus of the solitary tract, and nucleus of the spinal tract of the trigeminus; and the dorsal horn of the spinal cord. The distribution and abundance of 5-HT1A receptor mRNA in different rat brain areas generally correlate with those of the binding sites, suggesting that 5-HT1A receptors are predominantly somatodendritic receptors. PMID:1531498

  1. Interleukin-18, interleukin-12B and interferon-γ gene polymorphisms in Brazilian patients with rheumatoid arthritis: a pilot study.

    PubMed

    Angelo, H D; Gomes Silva, I I F; Oliveira, R D R; Louzada-Júnior, P; Donadi, E A; Crovella, S; Maia, M M D; de Souza, P R E; Sandrin-Garcia, P

    2015-10-01

    Polymorphisms in interleukin (IL)-18, IL-12 and interferon (IFN)-γ genes are associated with different levels of cytokines expression and have been associated with rheumatoid arthritis (RA). IL-18 +105 A/C, IL-12B +1188 A/C and IFN-γ +874 T/A polymorphisms were analyzed by restriction fragment length polymorphism-polymerase chain reaction (PCR) and amplification refractory mutation system PCR from 90 RA patients and 186 healthy individuals. There were significant differences to IL-18 +105 A/C polymorphism between the RA and control groups (odds ratio = 3.77; P < 0.0001). Individual carriers of the variant allele C had a 3.77-fold increased risk of for RA (P = 0.0032). No association was observed for IL-12B and IFN-γ polymorphisms. Our finds suggest a possible role for IL-18 polymorphism in the RA susceptibility in studied population. PMID:26302971

  2. Precise Branching Ratios to Unbound 12C States from 12N and 12B (beta)-Decays

    SciTech Connect

    Hyldegaard, S; Forssen, C; Alcorta, M; Barker, F C; Bastin, B; Borge, M G; Boutami, R; Brandenburg, S; Buscher, J; Dendooven, P; Diget, C A; Van Duppen, P; Eronen, T; Fox, S; Fulton, B R; Fynbo, H U; Huikari, J; Huyse, M; Jeppesen, H B; Jokinen, A; Jonson, B; Jungmann, K; Kankainen, A; Kirsebom, O; Madurga, M; Moore, I; Navratil, P; Nilsson, T; Nyman, G; Onderwater, G G; Penttila, H; Perajarvi, K; Raabe, R; Riisager, K; Rinta-Antila, S; Rogachevskiy, A; Saastamoinen, A; Sohani, M; Tengblad, O; Traykov, E; Vary, J P; Wang, Y; Wilhelmsen, K; Wilschut, H W; Aysto, J

    2008-08-20

    Two complementary experimental techniques have been used to extract precise branching ratios to unbound states in {sup 12}C from {sup 12}N and {sup 12}B {beta}-decays. In the first the three {alpha}-particles emitted after {beta}-decay are measured in coincidence in separate detectors, while in the second method {sup 12}N and {sup 12}B are implanted in a detector and the summed energy of the three {alpha}-particles is measured directly. For the narrow states at 7.654 MeV (0{sup +}) and 12.71 MeV (1{sup +}) the resulting branching ratios are both smaller than previous measurements by a factor of {approx_equal} 2. The experimental results are compared to no-core shell model calculations with realistic interactions from chiral perturbation theory, and inclusion of three-nucleon forces is found to give improved agreement.

  3. Spectroscopic Classification of M33N 2015-12b (PNV J01335420+3026108) as a Classical Nova

    NASA Astrophysics Data System (ADS)

    Williams, S. C.; Darnley, M. J.

    2016-01-01

    We obtained a spectrum of nova candidate M33N 2015-12b (PNV J01335420+3026108; see CBAT TOCP) with the SPRAT spectrograph on the 2m Liverpool Telescope (Steele et al. 2004) on 2016 January 4.81 UT. The spectrum shows strong Balmer emission and numerous Fe II lines (including multiplets 27, 28 and 42). Na I (D) and O I (7773 & Aring;) emission lines are also present.

  4. An Experimental Wireless Mesh Network Node Based on AVR ATmega16 Microcontroller and RFM12B Radio Module

    NASA Astrophysics Data System (ADS)

    Olejnik, Remigiusz

    The paper describes a simple node designed to act as part of an experimental wireless mesh network. The node is based on Atmel AVR ATmega16 microcontroller and Hope Microelectronics RFM12B radio module. Along with technical details of the node, the network layer (addressing scheme and routing algorithms) is presented. Fundamental principles on wireless mesh networks are also presented. Experimental results summarize the paper and prove limited usability of the project.

  5. GROUND-BASED DETECTIONS OF THERMAL EMISSION FROM CoRoT-1b AND WASP-12b

    SciTech Connect

    Zhao Ming; Swain, Mark R.; Monnier, John D.; Barman, Travis; Hinkley, Sasha

    2012-01-10

    We report a new detection of the H-band thermal emission of CoRoT-1b and two confirmation detections of the Ks-band thermal emission of WASP-12b at secondary eclipses. The H-band measurement of CoRoT-1b shows an eclipse depth of 0.145% {+-} 0.049% with a 3{sigma} percentile between 0.033% and 0.235%. This depth is consistent with the previous conclusions that the planet has an isothermal region with inefficient heat transport from day side to night side, and has a dayside thermal inversion layer at high altitude. The two Ks-band detections of WASP-12b show a joint eclipse depth of 0.299% {+-} 0.065%. This result agrees with the measurement of Croll and collaborators, providing independent confirmation of their measurement. The repeatability of the WASP-12b measurements also validates our data analysis method. Our measurements, in addition to a number of previous results made with other telescopes, demonstrate that ground-based observations are becoming widely available for characterization of atmospheres of hot Jupiters.

  6. Determination of dose distributions and parameter sensitivity. Hanford Environmental Dose Reconstruction Project; dose code recovery activities; Calculation 005

    SciTech Connect

    Napier, B.A.; Farris, W.T.; Simpson, J.C.

    1992-12-01

    A series of scoping calculations has been undertaken to evaluate the absolute and relative contribution of different radionuclides and exposure pathways to doses that may have been received by individuals living in the vicinity of the Hanford site. This scoping calculation (Calculation 005) examined the contributions of numerous parameters to the uncertainty distribution of doses calculated for environmental exposures and accumulation in foods. This study builds on the work initiated in the first scoping study of iodine in cow`s milk and the third scoping study, which added additional pathways. Addressed in this calculation were the contributions to thyroid dose of infants from (1) air submersion and groundshine external dose, (2) inhalation, (3) ingestion of soil by humans, (4) ingestion of leafy vegetables, (5) ingestion of other vegetables and fruits, (6) ingestion of meat, (7) ingestion of eggs, and (8) ingestion of cows` milk from Feeding Regime 1 as described in Calculation 001.

  7. Clinical coding. Code breakers.

    PubMed

    Mathieson, Steve

    2005-02-24

    --The advent of payment by results has seen the role of the clinical coder pushed to the fore in England. --Examinations for a clinical coding qualification began in 1999. In 2004, approximately 200 people took the qualification. --Trusts are attracting people to the role by offering training from scratch or through modern apprenticeships. PMID:15768716

  8. The binary weight distribution of the extended (2 sup m, 2 sup m-4) code of Reed-Solomon code over GF(2 sup m) with generator polynomial (x-alpha sup 2) (x-alpha sup 3)

    NASA Technical Reports Server (NTRS)

    Lin, Shu

    1987-01-01

    Consider an (n,k) linear code with symbols from GF(2 sup m). If each code symbol is represented by a binary m-tuple using a certain basis for GF(2 sup m), a binary (nm,km) linear code called a binary image of the original code is obtained. A lower bound is presented on the minimum weight enumerator for a binary image of the extended (2 sup m, 2 sup m -4) code of Reed-Solomon code over GF(2 sup m) with generator polynomical (x - alpha)(x- alpha squared)(x - alpha cubed) and its dual code, where alpha is a primitive element in GF(2 sup m).

  9. Comparison of depth-dose distributions of proton therapeutic beams calculated by means of logical detectors and ionization chamber modeled in Monte Carlo codes

    NASA Astrophysics Data System (ADS)

    Pietrzak, Robert; Konefał, Adam; Sokół, Maria; Orlef, Andrzej

    2016-08-01

    The success of proton therapy depends strongly on the precision of treatment planning. Dose distribution in biological tissue may be obtained from Monte Carlo simulations using various scientific codes making it possible to perform very accurate calculations. However, there are many factors affecting the accuracy of modeling. One of them is a structure of objects called bins registering a dose. In this work the influence of bin structure on the dose distributions was examined. The MCNPX code calculations of Bragg curve for the 60 MeV proton beam were done in two ways: using simple logical detectors being the volumes determined in water, and using a precise model of ionization chamber used in clinical dosimetry. The results of the simulations were verified experimentally in the water phantom with Marcus ionization chamber. The average local dose difference between the measured relative doses in the water phantom and those calculated by means of the logical detectors was 1.4% at first 25 mm, whereas in the full depth range this difference was 1.6% for the maximum uncertainty in the calculations less than 2.4% and for the maximum measuring error of 1%. In case of the relative doses calculated with the use of the ionization chamber model this average difference was somewhat greater, being 2.3% at depths up to 25 mm and 2.4% in the full range of depths for the maximum uncertainty in the calculations of 3%. In the dose calculations the ionization chamber model does not offer any additional advantages over the logical detectors. The results provided by both models are similar and in good agreement with the measurements, however, the logical detector approach is a more time-effective method.

  10. High Efficiency Integrated Space Conditioning, Water Heating and Air Distribution System for HUD-Code Manufactured Housing

    SciTech Connect

    Henry DeLima; Joe Akin; Joseph Pietsch

    2008-09-14

    Recognizing the need for new space conditioning and water heating systems for manufactured housing, DeLima Associates assembled a team to develop a space conditioning system that would enhance comfort conditions while also reducing energy usage at the systems level. The product, Comboflair® was defined as a result of a needs analysis of project sponsors and industry stakeholders. An integrated system would be developed that would combine a packaged airconditioning system with a small-duct, high-velocity air distribution system. In its basic configuration, the source for space heating would be a gas water heater. The complete system would be installed at the manufactured home factory and would require no site installation work at the homesite as is now required with conventional split-system air conditioners. Several prototypes were fabricated and tested before a field test unit was completed in October 2005. The Comboflair® system, complete with ductwork, was installed in a 1,984 square feet, double-wide manufactured home built by Palm Harbor Homes in Austin, TX. After the home was transported and installed at a Palm Harbor dealer lot in Austin, TX, a data acquisition system was installed for remote data collection. Over 60 parameters were continuously monitored and measurements were transmitted to a remote site every 15 minutes for performance analysis. The Comboflair® system was field tested from February 2006 until April 2007. The cooling system performed in accordance with the design specifications. The heating system initially could not provide the needed capacity at peak heating conditions until the water heater was replaced with a higher capacity standard water heater. All system comfort goals were then met. As a result of field testing, we have identified improvements to be made to specific components for incorporation into production models. The Comboflair® system will be manufactured by Unico, Inc. at their new production facility in St. Louis

  11. Final Technical Report for SBIR entitled Four-Dimensional Finite-Orbit-Width Fokker-Planck Code with Sources, for Neoclassical/Anomalous Transport Simulation of Ion and Electron Distributions

    SciTech Connect

    Harvey, R. W.; Petrov, Yu. V.

    2013-12-03

    Within the US Department of Energy/Office of Fusion Energy magnetic fusion research program, there is an important whole-plasma-modeling need for a radio-frequency/neutral-beam-injection (RF/NBI) transport-oriented finite-difference Fokker-Planck (FP) code with combined capabilities for 4D (2R2V) geometry near the fusion plasma periphery, and computationally less demanding 3D (1R2V) bounce-averaged capabilities for plasma in the core of fusion devices. Demonstration of proof-of-principle achievement of this goal has been carried out in research carried out under Phase I of the SBIR award. Two DOE-sponsored codes, the CQL3D bounce-average Fokker-Planck code in which CompX has specialized, and the COGENT 4D, plasma edge-oriented Fokker-Planck code which has been constructed by Lawrence Livermore National Laboratory and Lawrence Berkeley Laboratory scientists, where coupled. Coupling was achieved by using CQL3D calculated velocity distributions including an energetic tail resulting from NBI, as boundary conditions for the COGENT code over the two-dimensional velocity space on a spatial interface (flux) surface at a given radius near the plasma periphery. The finite-orbit-width fast ions from the CQL3D distributions penetrated into the peripheral plasma modeled by the COGENT code. This combined code demonstrates the feasibility of the proposed 3D/4D code. By combining these codes, the greatest computational efficiency is achieved subject to present modeling needs in toroidally symmetric magnetic fusion devices. The more efficient 3D code can be used in its regions of applicability, coupled to the more computationally demanding 4D code in higher collisionality edge plasma regions where that extended capability is necessary for accurate representation of the plasma. More efficient code leads to greater use and utility of the model. An ancillary aim of the project is to make the combined 3D/4D code user friendly. Achievement of full-coupling of these two Fokker

  12. Over-expression of HSPA12B protects mice against myocardium ischemic/reperfusion injury through a PPARγ-dependent PI3K/Akt/eNOS pathway

    PubMed Central

    Sun, Yanjun; Ye, Lincai; Jiang, Chuan; Jiang, Jun; Hong, Haifa; Qiu, Lisheng

    2015-01-01

    Acute myocardial ischemia/reperfusion (MIR) injury leads to severe arrhythmias and a high lethality. We aim to determine the effect of heat shock protein A12B (HSPA12B), a newly discovered member of the Hsp70 family, on heart injury parameters following MIR surgery. We used HSPA12B transgenic mice to determine its effects on heart function parameters, infarct size and cellular apoptosis following MIR surgery. Proinflammatory cytokines, oxidative products and anti-oxidative enzymes in the myocardium were measured to evaluate the anti-inflammatory and anti-oxidative effects of HSPA12B over-expression. The role of PPARs/eNOS/PI3k/Akt pathway was investigated using their inhibitors. The alteration of hemodynamic parameters, histopathological, apoptotic and infarct size caused by MIR was greatly attenuated in HSPA12B over-expressed mice. HSPA12B also greatly mitigated the inflammatory response, demonstrated by the decrease in the levels of IL-1β, IL-6, TNF-a and MPO. Anti-oxidative enzymes (SOD, Catalase and GPx) were restored by HSPA12B; oxidative products (8-OHdG, MDA and protein carbonyl) were decreased. HSPA12B activated the PPARγ-dependent eNOS/PI3k/Akt pathway, and the influence of HSPA12B on cardiac function was reversed by the inhibitors of eNOS, PPARγ, Akt and PI3K. Our results present a novel signaling mechanism that HSPA12B protects MIR injury through a PPARγ-dependent PI3K/Akt/eNOS pathway. PMID:26885270

  13. Environmental Assessment and Finding of No Significant Impact: Widening Trench 36 of the 218-E-12B Low-Level Burial Ground, Hanford Site, Richland, Washington

    SciTech Connect

    N /A

    1999-02-11

    This environmental assessment was prepared to assess potential environmental impacts associated with the proposed action to widen and operate unused Trench 36 in the 218-E-12B Low-Level Burial Ground for disposal of low-level waste. Information contained herein will be used by the Manager, U.S. Department of Energy, Richland Operations Office, to determine if the Proposed Action is a major federal action significantly affecting the quality of the human environment. If the Proposed Action is determined to be major and significant, an environmental impact statement will be prepared. If the Proposed Action is determined not to be major and significant, a Finding of No Significant Impact will be issued and the action may proceed. Criteria used to evaluate significance can be found in Title 40, Code of Federal Regulations 1508.27. This environmental assessment was prepared in compliance with the ''National Environmental Policy Act of1969'', as amended, the Council on Environmental Quality Regulations for Implementing the Procedural Provisions of ''National Environmental Policy Act'' (Title 40, Code of Federal Regulations 1500-1508), and the U.S. Department of Energy Implementing Procedures for ''National Environmental Polio Act'' (Title 10, Code of Federal Regulations 1021). The following is a description of each section of this environmental assessment. (1) Purpose and Need for Action. This section provides a brief statement concerning the problem or opportunity the U.S, Department of Energy is addressing with the Proposed Action. Background information is provided. (2) Description of the Proposed Action. This section provides a description of the Proposed Action with sufficient detail to identify potential environmental impacts. (3) Alternatives to the Proposed Action. This section describes reasonable,alternative actions to the Proposed Action, which addresses the Purpose and Need. A No Action Alternative, as required by Title 10, Code of Federal Regulations 1021

  14. GROUND-BASED, NEAR-INFRARED EXOSPECTROSCOPY. II. TENTATIVE DETECTION OF EMISSION FROM THE EXTREMELY HOT JUPITER WASP-12b

    SciTech Connect

    Crossfield, Ian J. M.; Hansen, Brad M. S.; Barman, Travis

    2012-02-10

    We report the tentative detection of the near-infrared emission of the hot Jupiter WASP-12b with the low-resolution prism on Infrared Telescope Facility/SpeX. We find a K - H contrast color of 0.137% {+-} 0.054%, corresponding to a blackbody of temperature 2400{sup +1500}{sub -500} K and consistent with previous, photometric observations. We also revisit WASP-12b's energy budget on the basis of secondary eclipse observations: the dayside luminosity is a relatively poorly constrained (2.0-4.3) Multiplication-Sign 10{sup 30} erg s{sup -1}, but this still allows us to predict a day/night effective temperature contrast of 200-1000 K (assuming A{sub B} = 0). Thus, we conclude that WASP-12b probably does not have both a low albedo and low recirculation efficiency. Our results show the promise and pitfalls of using single-slit spectrographs for characterization of extrasolar planet atmospheres, and we suggest future observing techniques and instruments which could lead to further progress. Limiting systematic effects include the use of too narrow a slit on one night-which observers could avoid in the future-and chromatic slit losses (resulting from the variable size of the seeing disk) and variations in telluric transparency-which observers cannot control. Single-slit observations of the type we present remain the best option for obtaining {lambda} > 1.7 {mu}m spectra of transiting exoplanets in the brightest systems. Further and more precise spectroscopy is needed to better understand the atmospheric chemistry, structure, and energetics of this, and other, intensely irradiated planet.

  15. Perylo[1,12-b,c,d] Thiophene Tetraesters: A New Class of Luminescent Columnar Liquid Crystals.

    PubMed

    Gupta, Ravindra Kumar; Pradhan, Balaram; Pathak, Suraj Kumar; Gupta, Monika; Pal, Santanu Kumar; Sudhakar, Achalkumar Ammathnadu

    2015-07-28

    Perylo[1,12-b,c,d] thiophene tetraesters exhibiting wide-range hexagonal columnar phase have been synthesized. These compounds also exhibit good homeotropic alignment in the liquid-crystalline phase which is very important for the device fabrication. These compounds showed sky-blue luminescence in solution under the long-wavelength UV light. With high solubility and high quantum yield these compounds can serve as standards to measure quantum yields of unknown samples. This new class of materials is promising, considering the emissive nature and stabilization of hexagonal columnar mesophase over a wide thermal range and ease of synthesis. PMID:26077109

  16. Synthesis of Substituted 2,3,5,6-tetraarylbenzo(1,2-b:5,4-b')difurans

    NASA Technical Reports Server (NTRS)

    Abdul-Aziz, Mahmoud; Auping, Judith V.; Meador, Michael A.

    1995-01-01

    A series of substituted 2,3,5,6-tetraarylbenzo(l,2-b:5,4-b')difurans 1 was synthesized. This synthesis is based upon the photocyclization of 2,5-dibenzoylresorcinol dibenzyl ethers to the corresponding tetrahydrobenzo(1,2-b:5,4-b')difurans. Treatment of the photoproducts with methanesulfonyl chloride in pyridine afforded 1 in overall yields ranging from 30-72%. A number of these compounds have high fluorescence quantum yields (of phi(sub f) = 0.76-0.90), and their fluorescence spectra exhibit large solvatochromic shifts. These compounds may be suitable for use as fluorescent probes.

  17. NEAR-INFRARED THERMAL EMISSION FROM WASP-12b: DETECTIONS OF THE SECONDARY ECLIPSE IN Ks, H, AND J

    SciTech Connect

    Croll, Bryce; Jayawardhana, Ray; Lafreniere, David; Albert, Loic; Fortney, Jonathan J.; Murray, Norman

    2011-02-15

    We present Ks, H, and J-band photometry of the very highly irradiated hot Jupiter WASP-12b using the Wide-field Infrared Camera on the Canada-France-Hawaii telescope. Our photometry brackets the secondary eclipse of WASP-12b in the Ks and H bands, and in J band starts in mid-eclipse and continues until well after the end of the eclipse. We detect its thermal emission in all three near-infrared bands. Our secondary eclipse depths are 0.309{sup +0.013}{sub -0.012}% in Ks band (24{sigma}), 0.176{sup +0.016}{sub -0.021}% in H band (9{sigma}), and 0.131{sup +0.027}{sub -0.029}% in J band (4{sigma}). All three secondary eclipses are best fit with a consistent phase, {phi}, that is compatible with a circular orbit: {phi} = 0.4998{sup +0.0008}{sub -0.0007}. The limits on the eccentricity, e, and argument of periastron, {omega}, of this planet from our photometry alone are thus |ecos {omega}| < 0.0040. By combining our secondary eclipse times with others published in the literature, as well as the radial-velocity and transit-timing data for this system, we show that there is no evidence that WASP-12b is precessing at a detectable rate and that its orbital eccentricity is likely zero. Our thermal-emission measurements also allow us to constrain the characteristics of the planet's atmosphere; our Ks-band eclipse depth argues strongly in favor of inefficient day to nightside redistribution of heat and a low Bond albedo for this very highly irradiated hot Jupiter. The J- and H-band brightness temperatures are slightly cooler than the Ks-band brightness temperature, and thus hint at the possibility of a modest temperature inversion deep in the atmosphere of WASP-12b; the high-pressure, deep atmospheric layers probed by our J- and H-band observations are likely more homogenized than the higher altitude layer probed by our Ks-band observations. Lastly, our best-fit Ks-band eclipse has a marginally longer duration than would otherwise be expected; this may be tentative evidence for

  18. Overexpression of soybean R2R3-MYB transcription factor, GmMYB12B2, and tolerance to UV radiation and salt stress in transgenic Arabidopsis.

    PubMed

    Li, X W; Wang, Y; Yan, F; Li, J W; Zhao, Y; Zhao, X; Zhai, Y; Wang, Q Y

    2016-01-01

    MYB, v-myb avian myeloblastosis viral oncogene homolog, proteins play central roles in plant stress response. Previously, we identified a novel R2R3-MYB transcription factor, GmMYB12B2, which affected the expression levels of some key enzyme genes involved in flavonoid biosynthesis in transgenic Arabidopsis. In the present study, we analyzed the expression levels of GmMYB12B2 under salt, low temperature, drought, abscisic acid (ABA), and ultraviolet (UV) radiation treatments in soybean using semi-quantitative reverse transcription polymerase chain reaction. The expression of GmMYB12B2 was drastically induced by UV irradiation and salt treatment, but no response was detected under low temperature, drought, and ABA stresses. A detailed characterization of the GmMYB12B2 overexpression lines revealed that GmMYB12B2 might be involved in response of plants to UV radiation and salt stresses. Transgenic Arabidopsis lines constitutively expressing GmMYB12B2 showed an increased tolerance to salt and UV radiation treatment compared with wild-type plants. The expression levels of certain salt stress-responsive genes, such as DREB2A and RD17, were found to be elevated in the transgenic plants. These results indicate that GmMYB12B2 acts as a regulator in the plant stress response. PMID:27323089

  19. XSOR codes users manual

    SciTech Connect

    Jow, Hong-Nian; Murfin, W.B.; Johnson, J.D.

    1993-11-01

    This report describes the source term estimation codes, XSORs. The codes are written for three pressurized water reactors (Surry, Sequoyah, and Zion) and two boiling water reactors (Peach Bottom and Grand Gulf). The ensemble of codes has been named ``XSOR``. The purpose of XSOR codes is to estimate the source terms which would be released to the atmosphere in severe accidents. A source term includes the release fractions of several radionuclide groups, the timing and duration of releases, the rates of energy release, and the elevation of releases. The codes have been developed by Sandia National Laboratories for the US Nuclear Regulatory Commission (NRC) in support of the NUREG-1150 program. The XSOR codes are fast running parametric codes and are used as surrogates for detailed mechanistic codes. The XSOR codes also provide the capability to explore the phenomena and their uncertainty which are not currently modeled by the mechanistic codes. The uncertainty distributions of input parameters may be used by an. XSOR code to estimate the uncertainty of source terms.

  20. MORSE Monte Carlo code

    SciTech Connect

    Cramer, S.N.

    1984-01-01

    The MORSE code is a large general-use multigroup Monte Carlo code system. Although no claims can be made regarding its superiority in either theoretical details or Monte Carlo techniques, MORSE has been, since its inception at ORNL in the late 1960s, the most widely used Monte Carlo radiation transport code. The principal reason for this popularity is that MORSE is relatively easy to use, independent of any installation or distribution center, and it can be easily customized to fit almost any specific need. Features of the MORSE code are described.

  1. West Nile Virus Temperature Sensitivity and Avian Virulence Are Modulated by NS1-2B Polymorphisms.

    PubMed

    Dietrich, Elizabeth A; Langevin, Stanley A; Huang, Claire Y-H; Maharaj, Payal D; Delorey, Mark J; Bowen, Richard A; Kinney, Richard M; Brault, Aaron C

    2016-08-01

    West Nile virus (WNV) replicates in a wide variety of avian species, which serve as reservoir and amplification hosts. WNV strains isolated in North America, such as the prototype strain NY99, elicit a highly pathogenic response in certain avian species, notably American crows (AMCRs; Corvus brachyrhynchos). In contrast, a closely related strain, KN3829, isolated in Kenya, exhibits a low viremic response with limited mortality in AMCRs. Previous work has associated the difference in pathogenicity primarily with a single amino acid mutation at position 249 in the helicase domain of the NS3 protein. The NY99 strain encodes a proline residue at this position, while KN3829 encodes a threonine. Introduction of an NS3-T249P mutation in the KN3829 genetic background significantly increased virulence and mortality; however, peak viremia and mortality were lower than those of NY99. In order to elucidate the viral genetic basis for phenotype variations exclusive of the NS3-249 polymorphism, chimeric NY99/KN3829 viruses were created. We show herein that differences in the NS1-2B region contribute to avian pathogenicity in a manner that is independent of and additive with the NS3-249 mutation. Additionally, NS1-2B residues were found to alter temperature sensitivity when grown in avian cells. PMID:27548738

  2. West Nile Virus Temperature Sensitivity and Avian Virulence Are Modulated by NS1-2B Polymorphisms

    PubMed Central

    Dietrich, Elizabeth A.; Langevin, Stanley A.; Huang, Claire Y.-H.; Maharaj, Payal D.; Delorey, Mark J.; Bowen, Richard A.; Kinney, Richard M.; Brault, Aaron C.

    2016-01-01

    West Nile virus (WNV) replicates in a wide variety of avian species, which serve as reservoir and amplification hosts. WNV strains isolated in North America, such as the prototype strain NY99, elicit a highly pathogenic response in certain avian species, notably American crows (AMCRs; Corvus brachyrhynchos). In contrast, a closely related strain, KN3829, isolated in Kenya, exhibits a low viremic response with limited mortality in AMCRs. Previous work has associated the difference in pathogenicity primarily with a single amino acid mutation at position 249 in the helicase domain of the NS3 protein. The NY99 strain encodes a proline residue at this position, while KN3829 encodes a threonine. Introduction of an NS3-T249P mutation in the KN3829 genetic background significantly increased virulence and mortality; however, peak viremia and mortality were lower than those of NY99. In order to elucidate the viral genetic basis for phenotype variations exclusive of the NS3-249 polymorphism, chimeric NY99/KN3829 viruses were created. We show herein that differences in the NS1-2B region contribute to avian pathogenicity in a manner that is independent of and additive with the NS3-249 mutation. Additionally, NS1-2B residues were found to alter temperature sensitivity when grown in avian cells. PMID:27548738

  3. Speech coding

    NASA Astrophysics Data System (ADS)

    Gersho, Allen

    1990-05-01

    Recent advances in algorithms and techniques for speech coding now permit high quality voice reproduction at remarkably low bit rates. The advent of powerful single-ship signal processors has made it cost effective to implement these new and sophisticated speech coding algorithms for many important applications in voice communication and storage. Some of the main ideas underlying the algorithms of major interest today are reviewed. The concept of removing redundancy by linear prediction is reviewed, first in the context of predictive quantization or DPCM. Then linear predictive coding, adaptive predictive coding, and vector quantization are discussed. The concepts of excitation coding via analysis-by-synthesis, vector sum excitation codebooks, and adaptive postfiltering are explained. The main idea of vector excitation coding (VXC) or code excited linear prediction (CELP) are presented. Finally low-delay VXC coding and phonetic segmentation for VXC are described.

  4. High C/O Chemistry and Weak Thermal Inversion in the Extremely Irradiated Atmosphere of Exoplanet WASP-12b

    NASA Technical Reports Server (NTRS)

    Madhusudhan, Nikku; Harrington, Joseph; Nymeyer, Sarah; Campo, Christopher J.; Wheatley, Peter J.; Deming, Drake; Blecie, Jasmina; Hardy, Ryan A.; Lust, Nate B.; Anderson, David R.; Collier-Cameron, Andrew; Britt, Christopher B. T.; Bowman, William C.; Hebb, Leslie; Hellier, Coel; Maxted, Pierre F. L.; Pollacco, Don; West, Richard G.

    2010-01-01

    The carbon-to-oxygen ratio (C/O) in a planet provides critical information about its primordial origins and subsequent evolution. A primordial C/O greater than 0.8 causes a carbide-dominated interior as opposed to the silicate-dominated composition as found on Earth; the solar C/O is 0.54. Theory, shows that high C/O leads to a diversity of carbon-rich planets that can have very different interiors and atmospheres from those in the solar system. Here we report the detection of C/O greater than or equal to 1 in a planetary atmosphere. The transiting hot Jupiter WASP-12b has a dayside atmosphere depleted in water vapour and enhanced in methane by over two orders of magnitude compared to a solar-abundance chemical equilibrium model at the expected temperatures. The observed concentrations of the prominent molecules CO, CH4, and H2O are consistent with theoretical expectations for an atmosphere with the observed C/O = 1. The C/O ratios are not known for giant planets in the solar system, although they are expected to equal the solar value. If high C/O ratios are common, then extrasolar planets are likely very different in interior composition, and formed very differently, from expectations based on solar composition, potentially explaining the large diversity in observed radii. We also find that the extremely irradiated atmosphere (greater than 2500 K) of WASP-12b lacks a prominent thermal inversion, or a stratosphere, and has very efficient day-night energy circulation. The absence of a strong thermal inversion is in stark contrast to theoretical predictions for the most highly irradiated hot-Jupiter atmospheres.

  5. THREE-DIMENSIONAL GAS DYNAMIC SIMULATION OF THE INTERACTION BETWEEN THE EXOPLANET WASP-12b AND ITS HOST STAR

    SciTech Connect

    Bisikalo, D.; Kaygorodov, P.; Ionov, D.; Shematovich, V.; Lammer, H.; Fossati, L.

    2013-02-10

    Hubble Space Telescope transit observations in the near-UV performed in 2009 made WASP-12b one of the most 'mysterious' exoplanets; the system presents an early ingress, which can be explained by the presence of optically thick matter located ahead of the planet at a distance of {approx}4-5 planet radii. This work follows previous attempts to explain this asymmetry with an exospheric outflow or a bow shock, induced by a planetary magnetic field, and provides a numerical solution of the early ingress, though we did not perform any radiative transfer calculation. We performed pure 3D gas dynamic simulations of the plasma interaction between WASP-12b and its host star and describe the flow pattern in the system. In particular, we show that the overfilling of the planet's Roche lobe leads to a noticeable outflow from the upper atmosphere in the direction of the L{sub 1} and L{sub 2} points. Due to the conservation of the angular momentum, the flow to the L{sub 1} point is deflected in the direction of the planet's orbital motion, while the flow toward L{sub 2} is deflected in the opposite direction, resulting in a non-axisymmetric envelope, surrounding the planet. The supersonic motion of the planet inside the stellar wind leads to the formation of a bow shock with a complex shape. The existence of the bow shock slows down the outflow through the L{sub 1} and L{sub 2} points, allowing us to consider a long-living flow structure that is in the steady state.

  6. BER Performance Due to Irregularity of Row-Weight Distribution of the Parity-Check Matrix in Irregular LDPC Codes for 10-Gb/s Optical Signals

    NASA Astrophysics Data System (ADS)

    Youn, Jinhyun; Jang, Hodeok; Kim, Kyoungsoo; Jeong, Jichai

    2005-09-01

    Forward-error correction (FEC) coding is theoretically investigated to improve bit-error-rate (BER) performance in a 10-Gb/s optical transmission system using randomly irregular low-density parity-check (LDPC) codes, regular LDPC codes, and the Reed-Solomon (RS) (255,239) code as a comparison. The irregular LDPC codes has different row-weight variances of a parity-check matrix from 10.9 to 18.8 and a row-weight mean of 60. Simulation is carried out under various conditions including the impairment factors such as dispersion, polarization-mode dispersion (PMD), and fiber nonlinearities. Results suggest that the irregular LDPC code with a low row-weight variance (= 10.9) generally has better performance for the most impairment factors except for the factor of dispersion. On the other hand, for the factor of dispersion the irregular LDPC code performs better with a high row-weight variance (= 18.8). A specific LDPC code can overcome the impairment limits in a deployed link.

  7. Uplink Coding

    NASA Technical Reports Server (NTRS)

    Pollara, Fabrizio; Hamkins, Jon; Dolinar, Sam; Andrews, Ken; Divsalar, Dariush

    2006-01-01

    This viewgraph presentation reviews uplink coding. The purpose and goals of the briefing are (1) Show a plan for using uplink coding and describe benefits (2) Define possible solutions and their applicability to different types of uplink, including emergency uplink (3) Concur with our conclusions so we can embark on a plan to use proposed uplink system (4) Identify the need for the development of appropriate technology and infusion in the DSN (5) Gain advocacy to implement uplink coding in flight projects Action Item EMB04-1-14 -- Show a plan for using uplink coding, including showing where it is useful or not (include discussion of emergency uplink coding).

  8. Contact radiotherapy using a 50 kV X-ray system: Evaluation of relative dose distribution with the Monte Carlo code PENELOPE and comparison with measurements

    NASA Astrophysics Data System (ADS)

    Croce, Olivier; Hachem, Sabet; Franchisseur, Eric; Marcié, Serge; Gérard, Jean-Pierre; Bordy, Jean-Marc

    2012-06-01

    This paper presents a dosimetric study concerning the system named "Papillon 50" used in the department of radiotherapy of the Centre Antoine-Lacassagne, Nice, France. The machine provides a 50 kVp X-ray beam, currently used to treat rectal cancers. The system can be mounted with various applicators of different diameters or shapes. These applicators can be fixed over the main rod tube of the unit in order to deliver the prescribed absorbed dose into the tumor with an optimal distribution. We have analyzed depth dose curves and dose profiles for the naked tube and for a set of three applicators. Dose measurements were made with an ionization chamber (PTW type 23342) and Gafchromic films (EBT2). We have also compared the measurements with simulations performed using the Monte Carlo code PENELOPE. Simulations were performed with a detailed geometrical description of the experimental setup and with enough statistics. Results of simulations are made in accordance with experimental measurements and provide an accurate evaluation of the dose delivered. The depths of the 50% isodose in water for the various applicators are 4.0, 6.0, 6.6 and 7.1 mm. The Monte Carlo PENELOPE simulations are in accordance with the measurements for a 50 kV X-ray system. Simulations are able to confirm the measurements provided by Gafchromic films or ionization chambers. Results also demonstrate that Monte Carlo simulations could be helpful to validate the future applicators designed for other localizations such as breast or skin cancers. Furthermore, Monte Carlo simulations could be a reliable alternative for a rapid evaluation of the dose delivered by such a system that uses multiple designs of applicators.

  9. Phonological coding during reading

    PubMed Central

    Leinenger, Mallorie

    2014-01-01

    The exact role that phonological coding (the recoding of written, orthographic information into a sound based code) plays during silent reading has been extensively studied for more than a century. Despite the large body of research surrounding the topic, varying theories as to the time course and function of this recoding still exist. The present review synthesizes this body of research, addressing the topics of time course and function in tandem. The varying theories surrounding the function of phonological coding (e.g., that phonological codes aid lexical access, that phonological codes aid comprehension and bolster short-term memory, or that phonological codes are largely epiphenomenal in skilled readers) are first outlined, and the time courses that each maps onto (e.g., that phonological codes come online early (pre-lexical) or that phonological codes come online late (post-lexical)) are discussed. Next the research relevant to each of these proposed functions is reviewed, discussing the varying methodologies that have been used to investigate phonological coding (e.g., response time methods, reading while eyetracking or recording EEG and MEG, concurrent articulation) and highlighting the advantages and limitations of each with respect to the study of phonological coding. In response to the view that phonological coding is largely epiphenomenal in skilled readers, research on the use of phonological codes in prelingually, profoundly deaf readers is reviewed. Finally, implications for current models of word identification (activation-verification model (Van Order, 1987), dual-route model (e.g., Coltheart, Rastle, Perry, Langdon, & Ziegler, 2001), parallel distributed processing model (Seidenberg & McClelland, 1989)) are discussed. PMID:25150679

  10. Phonological coding during reading.

    PubMed

    Leinenger, Mallorie

    2014-11-01

    The exact role that phonological coding (the recoding of written, orthographic information into a sound based code) plays during silent reading has been extensively studied for more than a century. Despite the large body of research surrounding the topic, varying theories as to the time course and function of this recoding still exist. The present review synthesizes this body of research, addressing the topics of time course and function in tandem. The varying theories surrounding the function of phonological coding (e.g., that phonological codes aid lexical access, that phonological codes aid comprehension and bolster short-term memory, or that phonological codes are largely epiphenomenal in skilled readers) are first outlined, and the time courses that each maps onto (e.g., that phonological codes come online early [prelexical] or that phonological codes come online late [postlexical]) are discussed. Next the research relevant to each of these proposed functions is reviewed, discussing the varying methodologies that have been used to investigate phonological coding (e.g., response time methods, reading while eye-tracking or recording EEG and MEG, concurrent articulation) and highlighting the advantages and limitations of each with respect to the study of phonological coding. In response to the view that phonological coding is largely epiphenomenal in skilled readers, research on the use of phonological codes in prelingually, profoundly deaf readers is reviewed. Finally, implications for current models of word identification (activation-verification model, Van Orden, 1987; dual-route model, e.g., M. Coltheart, Rastle, Perry, Langdon, & Ziegler, 2001; parallel distributed processing model, Seidenberg & McClelland, 1989) are discussed. PMID:25150679

  11. A novel endothelial-specific heat shock protein HspA12B is required in both zebrafish development and endothelial functions in vitro.

    PubMed

    Hu, Guang; Tang, Jian; Zhang, Bo; Lin, Yanfeng; Hanai, Jun-Ichi; Galloway, Jenna; Bedell, Victoria; Bahary, Nathan; Han, Zhihua; Ramchandran, Ramani; Thisse, Bernard; Thisse, Christine; Zon, Leonard I; Sukhatme, Vikas P

    2006-10-01

    A zebrafish transcript dubbed GA2692 was initially identified via a whole-mount in situ hybridization screen for vessel specific transcripts. Its mRNA expression during embryonic development was detected in ventral hematopoietic and vasculogenic mesoderm and later throughout the vasculature up to 48 hours post fertilization. Morpholino-mediated knockdown of GA2692 in embryos resulted in multiple defects in vasculature, particularly, at sites undergoing active capillary sprouting: the intersegmental vessels, sub-intestinal vessels and the capillary sprouts of the pectoral fin vessel. During the course of these studies, a homology search indicated that GA2692 is the zebrafish orthologue of mammalian HspA12B, a distant member of the heat shock protein 70 (Hsp70) family. By a combination of northern blot and real-time PCR analysis, we showed that HspA12B is highly expressed in human endothelial cells in vitro. Knockdown of HspA12B by small interfering RNAs (siRNAs) in human umbilical vein endothelial cells blocked wound healing, migration and tube formation, whereas overexpression of HspA12B enhanced migration and accelerated wound healing - data that are consistent with the in vivo fish phenotype obtained in the morpholino-knockdown studies. Phosphorylation of Akt was consistently reduced by siRNAs against HspA12B. Overexpression of a constitutively active form of Akt rescued the inhibitory effects of knockdown of HspA12B on migration of human umbilical vein endothelial cells. Collectively, our data suggests that HspA12B is a highly endothelial-cell-specific distant member of the Hsp70 family and plays a significant role in endothelial cells during development and angiogenesis in vitro, partially attributable to modulation of Akt phosphorylation. PMID:16968741

  12. Determination of Evolutionary Relationships of Outbreak-Associated Listeria monocytogenes Strains of Serotypes 1/2a and 1/2b by Whole-Genome Sequencing

    PubMed Central

    Bergholz, Teresa M.; den Bakker, Henk C.; Katz, Lee S.; Silk, Benjamin J.; Jackson, Kelly A.; Kucerova, Zuzana; Joseph, Lavin A.; Turnsek, Maryann; Gladney, Lori M.; Halpin, Jessica L.; Xavier, Karen; Gossack, Joseph; Ward, Todd J.; Frace, Michael

    2015-01-01

    We used whole-genome sequencing to determine evolutionary relationships among 20 outbreak-associated clinical isolates of Listeria monocytogenes serotypes 1/2a and 1/2b. Isolates from 6 of 11 outbreaks fell outside the clonal groups or “epidemic clones” that have been previously associated with outbreaks, suggesting that epidemic potential may be widespread in L. monocytogenes and is not limited to the recognized epidemic clones. Pairwise comparisons between epidemiologically related isolates within clonal complexes showed that genome-level variation differed by 2 orders of magnitude between different comparisons, and the distribution of point mutations (core versus accessory genome) also varied. In addition, genetic divergence between one closely related pair of isolates from a single outbreak was driven primarily by changes in phage regions. The evolutionary analysis showed that the changes could be attributed to horizontal gene transfer; members of the diverse bacterial community found in the production facility could have served as the source of novel genetic material at some point in the production chain. The results raise the question of how to best utilize information contained within the accessory genome in outbreak investigations. The full magnitude and complexity of genetic changes revealed by genome sequencing could not be discerned from traditional subtyping methods, and the results demonstrate the challenges of interpreting genetic variation among isolates recovered from a single outbreak. Epidemiological information remains critical for proper interpretation of nucleotide and structural diversity among isolates recovered during outbreaks and will remain so until we understand more about how various population histories influence genetic variation. PMID:26590286

  13. Removal of Direct Red 12B by garlic peel as a cheap adsorbent: Kinetics, thermodynamic and equilibrium isotherms study of removal

    NASA Astrophysics Data System (ADS)

    Asfaram, A.; Fathi, M. R.; Khodadoust, S.; Naraki, M.

    2014-06-01

    The removal of dyes from industrial waste is very important from health and hygiene point of view and for environmental protection. In this work, efficiency and performance of garlic peel (GP) adsorbent for the removal of Direct Red 12B (DR12B) from wastewater was investigated. The influence of variables including pH, concentration of the dye and amount of adsorbent, particle size, contact time and temperature on the dye removal has been investigated. It was observed that the pseudo-second-order kinetic model fits better with good correlation coefficient and the equilibrium data fitted well with the Langmuir model. More than 99% removal efficiency was obtained within 25 min at adsorbent dose of 0.2 g per 50 ml for initial dye concentration of 50 mg L-1. Calculation of various thermodynamic parameters such as, Gibb's free energy, entropy and enthalpy of the on-going adsorption process indicate feasibility and endothermic nature of DR12B adsorption.

  14. Computer Code

    NASA Technical Reports Server (NTRS)

    1985-01-01

    COSMIC MINIVER, a computer code developed by NASA for analyzing aerodynamic heating and heat transfer on the Space Shuttle, has been used by Marquardt Company to analyze heat transfer on Navy/Air Force missile bodies. The code analyzes heat transfer by four different methods which can be compared for accuracy. MINIVER saved Marquardt three months in computer time and $15,000.

  15. DNA codes

    SciTech Connect

    Torney, D. C.

    2001-01-01

    We have begun to characterize a variety of codes, motivated by potential implementation as (quaternary) DNA n-sequences, with letters denoted A, C The first codes we studied are the most reminiscent of conventional group codes. For these codes, Hamming similarity was generalized so that the score for matched letters takes more than one value, depending upon which letters are matched [2]. These codes consist of n-sequences satisfying an upper bound on the similarities, summed over the letter positions, of distinct codewords. We chose similarity 2 for matches of letters A and T and 3 for matches of the letters C and G, providing a rough approximation to double-strand bond energies in DNA. An inherent novelty of DNA codes is 'reverse complementation'. The latter may be defined, as follows, not only for alphabets of size four, but, more generally, for any even-size alphabet. All that is required is a matching of the letters of the alphabet: a partition into pairs. Then, the reverse complement of a codeword is obtained by reversing the order of its letters and replacing each letter by its match. For DNA, the matching is AT/CG because these are the Watson-Crick bonding pairs. Reversal arises because two DNA sequences form a double strand with opposite relative orientations. Thus, as will be described in detail, because in vitro decoding involves the formation of double-stranded DNA from two codewords, it is reasonable to assume - for universal applicability - that the reverse complement of any codeword is also a codeword. In particular, self-reverse complementary codewords are expressly forbidden in reverse-complement codes. Thus, an appropriate distance between all pairs of codewords must, when large, effectively prohibit binding between the respective codewords: to form a double strand. Only reverse-complement pairs of codewords should be able to bind. For most applications, a DNA code is to be bi-partitioned, such that the reverse-complementary pairs are separated

  16. Coded aperture computed tomography

    NASA Astrophysics Data System (ADS)

    Choi, Kerkil; Brady, David J.

    2009-08-01

    Diverse physical measurements can be modeled by X-ray transforms. While X-ray tomography is the canonical example, reference structure tomography (RST) and coded aperture snapshot spectral imaging (CASSI) are examples of physically unrelated but mathematically equivalent sensor systems. Historically, most x-ray transform based systems sample continuous distributions and apply analytical inversion processes. On the other hand, RST and CASSI generate discrete multiplexed measurements implemented with coded apertures. This multiplexing of coded measurements allows for compression of measurements from a compressed sensing perspective. Compressed sensing (CS) is a revelation that if the object has a sparse representation in some basis, then a certain number, but typically much less than what is prescribed by Shannon's sampling rate, of random projections captures enough information for a highly accurate reconstruction of the object. This paper investigates the role of coded apertures in x-ray transform measurement systems (XTMs) in terms of data efficiency and reconstruction fidelity from a CS perspective. To conduct this, we construct a unified analysis using RST and CASSI measurement models. Also, we propose a novel compressive x-ray tomography measurement scheme which also exploits coding and multiplexing, and hence shares the analysis of the other two XTMs. Using this analysis, we perform a qualitative study on how coded apertures can be exploited to implement physical random projections by "regularizing" the measurement systems. Numerical studies and simulation results demonstrate several examples of the impact of coding.

  17. Polymorphisms on IFNG, IL12B and IL12RB1 genes and paracoccidioidomycosis in the Brazilian population.

    PubMed

    Carvalho, F M C; Busser, F D; Freitas, V L T; Furucho, C R; Sadahiro, A; Kono, A S G; Criado, P R; Moretti, M L; Sato, P K; Shikanai-Yasuda, M A

    2016-09-01

    Paracoccidioidomycosis (PCM) is a systemic chronic mycosis, endemic in Latin America, especially Brazil, and is the eighth leading cause of death among chronic and recurrent infectious diseases. PCM infection is characterized by the presence of Th1 immune response; the acute form, by a mixed Th2/Th9, while the chronic form is characterized by Th17/Th22 profiles. The occurrence and severity of human PCM may also be associated with genetic factors such as single nucleotide polymorphisms (SNP) on cytokines encoding genes. We investigated the association between these polymorphisms and the different clinical forms of PCM. We included 156 patients with PCM (40 with the acute form, 99 with the chronic multifocal and 17 with the chronic unifocal form) and assayed their DNA samples for IFNG +874 T/A SNP by PCR-ARMS (Amplification Refractory Mutational System), IL12B +1188 A/C SNP on 3' UTR and IL12RB1 641 A/G SNP on exon 7 by PCR-RFLP (Restriction Fragment Length Polymorphism). We found similar genotypic and allelic frequencies of the investigated SNPs among the clinical forms of PCM. Considering male patients, the IL12RB1 641 AA genotype was more frequent in the chronic multifocal form while heterozygosis was in the chronic unifocal form of PCM (p=0.048). Although our data suggest that the AA genotype (IL12RB1) may be associated with the more disseminated chronic disease, more patients of the chronic unifocal PCM group need to be analyzed as well as the secretion patterns of IFN-γ combined with the IL-12Rβ1 expression for a better comprehension of this association. PMID:27223631

  18. Associations between Intake of Folate, Methionine, and Vitamins B-12, B-6 and Prostate Cancer Risk in American Veterans

    PubMed Central

    Vidal, Adriana C.; Grant, Delores J.; Williams, Christina D.; Masko, Elizabeth; Allott, Emma H.; Shuler, Kathryn; McPhail, Megan; Gaines, Alexis; Calloway, Elizabeth; Gerber, Leah; Chi, Jen-Tsan; Freedland, Stephen J.; Hoyo, Cathrine

    2012-01-01

    Prostate cancer (PC) is the second leading cause of cancer death in men. Recent reports suggest that excess of nutrients involved in the one-carbon metabolism pathway increases PC risk; however, empirical data are lacking. Veteran American men (272 controls and 144 PC cases) who attended the Durham Veteran American Medical Center between 2004–2009 were enrolled into a case-control study. Intake of folate, vitamin B12, B6, and methionine were measured using a food frequency questionnaire. Regression models were used to evaluate the association among one-carbon cycle nutrients, MTHFR genetic variants, and prostate cancer. Higher dietary methionine intake was associated with PC risk (OR = 2.1; 95%CI 1.1–3.9) The risk was most pronounced in men with Gleason sum <7 (OR = 2.75; 95%CI 1.32– 5.73). The association of higher methionine intake and PC risk was only apparent in men who carried at least one MTHFR A1298C allele (OR = 6.7; 95%CI = 1.6–27.8), compared to MTHFR A1298A noncarrier men (OR = 0.9; 95%CI = 0.24–3.92) (p-interaction = 0.045). There was no evidence for associations between B vitamins (folate, B12, and B6) and PC risk. Our results suggest that carrying the MTHFR A1298C variants modifies the association between high methionine intake and PC risk. Larger studies are required to validate these findings. PMID:22927849

  19. Electrical Circuit Simulation Code

    2001-08-09

    Massively-Parallel Electrical Circuit Simulation Code. CHILESPICE is a massively-arallel distributed-memory electrical circuit simulation tool that contains many enhanced radiation, time-based, and thermal features and models. Large scale electronic circuit simulation. Shared memory, parallel processing, enhance convergence. Sandia specific device models.

  20. RE-EVALUATING WASP-12b: STRONG EMISSION AT 2.315 {mu}m, DEEPER OCCULTATIONS, AND AN ISOTHERMAL ATMOSPHERE

    SciTech Connect

    Crossfield, Ian J. M.; Barman, Travis; Hansen, Brad M. S.; Tanaka, Ichi; Kodama, Tadayuki

    2012-12-01

    We revisit the atmospheric properties of the extremely hot Jupiter WASP-12b in light of several new developments. First, we present new narrowband (2.315 {mu}m) secondary eclipse photometry, which exhibits a planet/star flux ratio of 0.45% {+-} 0.06%, corresponding to a brightness temperature of 3640 {+-} 230 K; second, recent Spitzer/Infrared Array Camera and Hubble Space Telescope/Wide Field Camera 3 observations; and third, a recently observed star only 1'' from WASP-12, which has diluted previous observations and which we further characterize here. We correct past WASP-12b eclipse measurements for the presence of this object, and we revisit the interpretation of WASP-12b's dilution-corrected emission spectrum. The resulting planetary emission spectrum is well approximated by a blackbody, and consequently our primary conclusion is that the planet's infrared photosphere is nearly isothermal. Thus, secondary eclipse spectroscopy is relatively ill suited to constrain WASP-12b's atmospheric abundances, and transmission spectroscopy may be necessary to achieve this goal.

  1. 17 CFR 249.210 - Form 10 and Form 10-SB, general form for registration of securities pursuant to section 12 (b) or...

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 17 Commodity and Securities Exchanges 4 2014-04-01 2014-04-01 false Form 10 and Form 10-SB, general form for registration of securities pursuant to section 12 (b) or (g) of the Securities Exchange Act of 1934. 249.210 Section 249.210 Commodity and Securities Exchanges SECURITIES AND EXCHANGE COMMISSION (CONTINUED) FORMS, SECURITIES EXCHANGE...

  2. Experimental study of the {sup 11,12}B(n,gamma) reactions and their influence on r-process nucleosynthesis of light elements.

    SciTech Connect

    Lee, H. Y.; Greene, J. P.; Jiang, C. L.; Pardo, R. C.; Rehm , K. E.; Schiffer, J. P.; Wuosmaa, A. H.; Goodman, N. J.; Lighthall, J. C.; Marley, S. T.; Otsuki, K.; Patel, N.; Beard, M.; Notani, M.; Tang, X. D.; Physics; Western Michigan Univ.; GSI; Colorado School of Mines; Univ. of Notre Dame

    2010-01-01

    We have studied the neutron-transfer reactions {sup 11,12}B(d,p){sup 12,13}B in inverse kinematics to obtain information about the neutron-capture reactions {sup 11,12}B(n,{gamma}). These capture reactions are suggested to play a role in seeding r-process nucleosynthesis through the production of light, neutron-rich nuclei. The neutron spectroscopic factors of the states in {sup 12,13}B were deduced and the branching ratio of the neutron-unbound state at E{sub X} = 3.389 MeV in {sup 12}B was obtained to provide the ratio of partial widths, {Lambda}{sub n}/{Lambda}{sub {gamma}}. The reaction rates for {sup 11,12}B(n,{gamma}) are estimated for direct captures and resonant captures and compared with previous compilations. The astrophysical implications, especially for neutrino-driven wind models in core-collapse supernovae, are discussed in the r-process network framework using our updated reaction rates.

  3. Determination of evolutionary relationships of outbreak-associated Listeria monocytogenes strains of serotypes 1/2a and 1/2b by whole-genome sequencing

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We used whole-genome sequencing to determine evolutionary relationships among 20 outbreak-associated clinical isolates of Listeria monocytogenes serotypes 1/2a and 1/2b. Isolates from 6 of 11 outbreaks fell outside the clonal groups or “epidemic clones” that have been previously associated with outb...

  4. Identification of phosphorylated MYL12B as a potential plasma biomarker for septic acute kidney injury using a quantitative proteomic approach.

    PubMed

    Wu, Fan; Dong, Xiu-Juan; Li, Yan-Yan; Zhao, Yan; Xu, Qiu-Lin; Su, Lei

    2015-01-01

    Acute kidney injury (AKI) is a common and increasingly encountered complication in hospitalized patients with critical illness in intensive care units (ICU). According to the etiology, Sepsis-induced AKI (SAKI) is a leading contributor to AKI and significantly has very poor prognosis, which might be related to the late detection when the elevation of BUN and serum creatinine (SCr) is used. Many genes are up-regulated in the damaged kidney with the corresponding protein products appearing in plasma and urine. Some of these are candidate biomarkers for more timely diagnosis of SAKI. Therefore, extensive research efforts over this past decade have been directed at the discovery and validation of novel SAKI biomarkers to detect injury prior to changes in kidney function, a number of serum and urinary proteins, including NGAL, KIM-1, cystatin-C, IL-18, and L-FABP, have been identified for predicting SAKI before a rise in BUN and serum creatinine in several experimental and clinical trainings. Unfortunately, an ideal biomarker of SAKI with highly sensitivity and specificity has not been identified yet. Recent progresses in quantitative proteomics have offered opportunities to discover biomarkers for SAKI. In the present study, kidney tissue samples from SAKI mice were analyzed by two-dimensional differential gel electrophoresis (2D-DIGE), and 4 up-regulated proteins, which were actin (ACTB), myosin regulatory light chain 12B (MYL12B), myosin regulatory light polypeptide 9 (MYL9), and myosin regulatory light chain 12A (MYL12A) were identified by matrix assisted laser desorption ionization-time of flight/time of flight mass spectrometry (MALDI-TOF/TOF MS). Among all the varied proteins, MYL12B was validated by western blot. Interestingly, there was no change between the SAKI and control kidney tissues, however, phosphorylated MYL12B was detected to be consistent with the proteomics data. Furthermore, phosphorylated MYL12B was found similarly to be increased in SAKI plasma

  5. Identification of phosphorylated MYL12B as a potential plasma biomarker for septic acute kidney injury using a quantitative proteomic approach

    PubMed Central

    Wu, Fan; Dong, Xiu-Juan; Li, Yan-Yan; Zhao, Yan; Xu, Qiu-Lin; Su, Lei

    2015-01-01

    Acute kidney injury (AKI) is a common and increasingly encountered complication in hospitalized patients with critical illness in intensive care units (ICU). According to the etiology, Sepsis-induced AKI (SAKI) is a leading contributor to AKI and significantly has very poor prognosis, which might be related to the late detection when the elevation of BUN and serum creatinine (SCr) is used. Many genes are up-regulated in the damaged kidney with the corresponding protein products appearing in plasma and urine. Some of these are candidate biomarkers for more timely diagnosis of SAKI. Therefore, extensive research efforts over this past decade have been directed at the discovery and validation of novel SAKI biomarkers to detect injury prior to changes in kidney function, a number of serum and urinary proteins, including NGAL, KIM-1, cystatin-C, IL-18, and L-FABP, have been identified for predicting SAKI before a rise in BUN and serum creatinine in several experimental and clinical trainings. Unfortunately, an ideal biomarker of SAKI with highly sensitivity and specificity has not been identified yet. Recent progresses in quantitative proteomics have offered opportunities to discover biomarkers for SAKI. In the present study, kidney tissue samples from SAKI mice were analyzed by two-dimensional differential gel electrophoresis (2D-DIGE), and 4 up-regulated proteins, which were actin (ACTB), myosin regulatory light chain 12B (MYL12B), myosin regulatory light polypeptide 9 (MYL9), and myosin regulatory light chain 12A (MYL12A) were identified by matrix assisted laser desorption ionization-time of flight/time of flight mass spectrometry (MALDI-TOF/TOF MS). Among all the varied proteins, MYL12B was validated by western blot. Interestingly, there was no change between the SAKI and control kidney tissues, however, phosphorylated MYL12B was detected to be consistent with the proteomics data. Furthermore, phosphorylated MYL12B was found similarly to be increased in SAKI plasma

  6. Time-dependent distribution functions and resulting synthetic NPA spectra in C-Mod calculated with the CQL3D-Hybrid-FOW, AORSA full-wave, and DC Lorentz codes

    NASA Astrophysics Data System (ADS)

    Harvey, R. W.; Petrov, Yu.; Jaeger, E. F.; Berry, L. A.; Bonoli, P. T.; Bader, A.

    2015-12-01

    A time-dependent simulation of C-Mod pulsed TCRF power is made obtaining minority hydrogen ion distributions with the CQL3D-Hybrid-FOW finite-orbit-width Fokker-Planck code. Cyclotron-resonant TCRF fields are calculated with the AORSA full wave code. The RF diffusion coefficients used in CQL3D are obtained with the DC Lorentz gyro-orbit code for perturbed particle trajectories in the combined equilibrium and TCRF electromagnetic fields. Prior results with a zero-banana-width simulation using the CQL3D/AORSA/DC time-cycles showed a pronounced enhancement of the H distribution in the perpendicular velocity direction compared to results obtained from Stix's quasilinear theory, and this substantially increased the rampup rate of the observed vertically-viewed neutral particle analyzer (NPA) flux, in general agreement with experiment. However, ramp down of the NPA flux after the pulse, remained long compared to the experiment. The present study compares the new FOW results, including relevant gyro-radius effects, to determine the importance of these new effects on the the NPA time-dependence.

  7. Turbo Codes for PCS Applications

    NASA Technical Reports Server (NTRS)

    Divsalar, D.; Pollara, F.

    1995-01-01

    A number of the claims for turbo codes as a great advance in coding theory are confirmed, and a complete description is presented of an encoder/decoder pair that could be suitable for PCS applications. A new simple method for trellis termination is described, the effect of interleaver choice on the weight distribution of the code is analyzed, and unequal rate components (which yield better performance) are introduced.

  8. PYRROLO[1,2-b][1,2,5]BENZOTHIADIAZEPINES (PBTDs) induce apoptosis in K562 cells

    PubMed Central

    Marfe, Gabriella; Di Stefano, Carla; Silvestri, Romano; Abruzzese, Elisabetta; Catalano, Gianfranco; Di Renzo, Livia; Filomeni, Giuseppe; Giorda, Ezio; La Regina, Giuseppe; Morgante, Emanuela; Ciriolo, Maria Rosa; Russo, Matteo Antonio; Amadori, Sergio; Sinibaldi-Salimei, Paola

    2007-01-01

    Background The objective of this study was to gain insight into the molecular mechanism of induced cell death (apoptosis) by PYRROLO [1,2-b][1,2,5]BENZOTHIADIAZEPINES (PBTDs) series compounds, using human (K562) cells as a model. Methods We focused our attention on some members of the PBTDs family to test their potential apoptotic activity in K562 cells. Important apoptotic activity was demonstrated, as evidenced by the concentration and percentage of cell death quantified by measuring PI-uptake by flow cytometry, and DNA fragmentation analyzed by agarose gel electrophoresis, generating a characteristic ladder pattern of discontinuous DNA fragments. The expression of Bcl-2 family was tested using western blotting and transfection method. Results PBTDs-mediated suppression of K562 cell proliferation was induced by apoptosis characterized by the appearance of DNA fragmentation and was associated with the poly(ADP-ribose)polymerase (PARP) cleavage. PBTD-1 and -3 treatment resulted in caspase-3 activation through down-regulation of Bcl-2 and up-regulation of Bax. Furthermore, we used K562/vector and K562/bcl-2 cells, which were generated by transfection of the cDNA of the Bcl-2 gene. As compared with K562/vector, K562/Bcl-2 cells exhibited a 4-fold greater expression of Bcl-2. Treatment with 10 μM PBTD-1 and -3 for 24 h produced morphological features of apoptosis and DNA fragmentation in K562/vector cells, respectively. In contrast, PBTD-1 and -3-induced caspase-3 activation and apoptosis were inhibited in K562/Bcl-2. Furthermore, Bcl-2 overexpressing cells exhibited less cytocrome c release during PBTDs-induced apoptosis. Conclusion These results indicate that PBTDs effectively induce apoptosis of K562 leukemia cells through the activation of caspase cascades. In addition, these findings indicate that Bcl-2 inhibits PBTD-1 and -3 induced-apoptosis via a mechanism that interferes with cytocrome c release, and the activity of caspase-3, which is involved in the execution of apoptosis. PMID:17996085

  9. Clues to tRNA Evolution from the Distribution of Class II tRNAs and Serine Codons in the Genetic Code.

    PubMed

    Bernhardt, Harold S

    2016-01-01

    We have previously proposed that tRNA(Gly) was the first tRNA and glycine was the first amino acid incorporated into the genetic code. The next two amino acids incorporated would have been the other two small hydrophilic amino acids serine and aspartic acid, which occurred through the duplication of the tRNA(Gly) sequence, followed by mutation of its anticodon by single C to U transition mutations, possibly through spontaneous deamination. Interestingly, however, tRNA(Ser) has a different structure than most other tRNAs, possessing a long variable arm; because of this tRNA(Ser) is classified as a class II tRNA. Also, serine codons are found not only in the bottom right-hand corner of the genetic code table next to those for glycine and aspartic acid, but also in the top row of the table, next to those for two of the most hydrophobic amino acids, leucine and phenylalanine. In the following, I propose that the class II tRNA structure of tRNA(Ser) and the arrangement of serine codons in the genetic code provide clues to the early evolution of tRNA and the genetic code. In addition, I address Di Giulio's recent criticism of our proposal that tRNA(Gly) was the first tRNA, and discuss how early peptides produced from a restricted amino acid alphabet of glycine, serine and aspartic acid might have possessed proteolytic activity, which is possibly important for the early recycling of amino acid monomers. PMID:26927183

  10. Clues to tRNA Evolution from the Distribution of Class II tRNAs and Serine Codons in the Genetic Code

    PubMed Central

    Bernhardt, Harold S.

    2016-01-01

    We have previously proposed that tRNAGly was the first tRNA and glycine was the first amino acid incorporated into the genetic code. The next two amino acids incorporated would have been the other two small hydrophilic amino acids serine and aspartic acid, which occurred through the duplication of the tRNAGly sequence, followed by mutation of its anticodon by single C to U transition mutations, possibly through spontaneous deamination. Interestingly, however, tRNASer has a different structure than most other tRNAs, possessing a long variable arm; because of this tRNASer is classified as a class II tRNA. Also, serine codons are found not only in the bottom right-hand corner of the genetic code table next to those for glycine and aspartic acid, but also in the top row of the table, next to those for two of the most hydrophobic amino acids, leucine and phenylalanine. In the following, I propose that the class II tRNA structure of tRNASer and the arrangement of serine codons in the genetic code provide clues to the early evolution of tRNA and the genetic code. In addition, I address Di Giulio’s recent criticism of our proposal that tRNAGly was the first tRNA, and discuss how early peptides produced from a restricted amino acid alphabet of glycine, serine and aspartic acid might have possessed proteolytic activity, which is possibly important for the early recycling of amino acid monomers. PMID:26927183

  11. Speech coding

    SciTech Connect

    Ravishankar, C., Hughes Network Systems, Germantown, MD

    1998-05-08

    Speech is the predominant means of communication between human beings and since the invention of the telephone by Alexander Graham Bell in 1876, speech services have remained to be the core service in almost all telecommunication systems. Original analog methods of telephony had the disadvantage of speech signal getting corrupted by noise, cross-talk and distortion Long haul transmissions which use repeaters to compensate for the loss in signal strength on transmission links also increase the associated noise and distortion. On the other hand digital transmission is relatively immune to noise, cross-talk and distortion primarily because of the capability to faithfully regenerate digital signal at each repeater purely based on a binary decision. Hence end-to-end performance of the digital link essentially becomes independent of the length and operating frequency bands of the link Hence from a transmission point of view digital transmission has been the preferred approach due to its higher immunity to noise. The need to carry digital speech became extremely important from a service provision point of view as well. Modem requirements have introduced the need for robust, flexible and secure services that can carry a multitude of signal types (such as voice, data and video) without a fundamental change in infrastructure. Such a requirement could not have been easily met without the advent of digital transmission systems, thereby requiring speech to be coded digitally. The term Speech Coding is often referred to techniques that represent or code speech signals either directly as a waveform or as a set of parameters by analyzing the speech signal. In either case, the codes are transmitted to the distant end where speech is reconstructed or synthesized using the received set of codes. A more generic term that is applicable to these techniques that is often interchangeably used with speech coding is the term voice coding. This term is more generic in the sense that the

  12. Heuristic dynamic complexity coding

    NASA Astrophysics Data System (ADS)

    Škorupa, Jozef; Slowack, Jürgen; Mys, Stefaan; Lambert, Peter; Van de Walle, Rik

    2008-04-01

    Distributed video coding is a new video coding paradigm that shifts the computational intensive motion estimation from encoder to decoder. This results in a lightweight encoder and a complex decoder, as opposed to the predictive video coding scheme (e.g., MPEG-X and H.26X) with a complex encoder and a lightweight decoder. Both schemas, however, do not have the ability to adapt to varying complexity constraints imposed by encoder and decoder, which is an essential ability for applications targeting a wide range of devices with different complexity constraints or applications with temporary variable complexity constraints. Moreover, the effect of complexity adaptation on the overall compression performance is of great importance and has not yet been investigated. To address this need, we have developed a video coding system with the possibility to adapt itself to complexity constraints by dynamically sharing the motion estimation computations between both components. On this system we have studied the effect of the complexity distribution on the compression performance. This paper describes how motion estimation can be shared using heuristic dynamic complexity and how distribution of complexity affects the overall compression performance of the system. The results show that the complexity can indeed be shared between encoder and decoder in an efficient way at acceptable rate-distortion performance.

  13. Immunochemical characterization of the O antigens of two Proteus strains, O8-related antigen of Proteus mirabilis 12 B-r and O2-related antigen of Proteus genomospecies 5/6 12 B-k, infecting a hospitalized patient in Poland.

    PubMed

    Drzewiecka, Dominika; Shashkov, Alexander S; Arbatsky, Nikolay P; Knirel, Yuriy A

    2016-05-01

    A hospitalized 73-year-old woman was infected with a Proteus mirabilis strain, 12 B-r, isolated from the place of injection of a blood catheter. Another strain, 12 B-k, recognized as Proteus genomospecies 5 or 6, was isolated from the patient's faeces, which was an example of a nosocomial infection rather than an auto-infection. Serological investigation using ELISA and Western blotting showed that strain 12 B-k from faeces belonged to the Proteus O2 serogroup. Strain 12 B-r from the wound displayed cross-reactions with several Proteus O serogroups due to common epitopes on the core or O-specific parts of the lipopolysaccharide. Studies of the isolated 12 B-r O-specific polysaccharide by NMR spectroscopy revealed its close structural similarity to that of Proteus O8. The only difference in 12 B-r was the presence of an additional GlcNAc-linked phosphoethanolamine residue, which creates a putative epitope responsible for the cross-reactivity with Pt. mirabilis O16. The new O-antigen form could appear as a result of adaptation of the bacterium to a changing environment. On the basis of the data obtained, we suggest division of the O8 serogroup into two subgroups: O8a for strains of various Proteus species that have been previously classified into the O8 serogroup, and O8a,b for Pt. mirabilis 12 B-r, where 'a' is a common epitope and 'b' is a phosphoethanolamine-associated epitope. These findings further confirm serological and structural heterogeneity of O antigens of Proteus strains isolated lately from patients in Poland. PMID:26959528

  14. FLYCHK Collisional-Radiative Code

    National Institute of Standards and Technology Data Gateway

    SRD 160 FLYCHK Collisional-Radiative Code (Web, free access)   FLYCHK provides a capability to generate atomic level populations and charge state distributions for low-Z to mid-Z elements under NLTE conditions.

  15. QR Codes

    ERIC Educational Resources Information Center

    Lai, Hsin-Chih; Chang, Chun-Yen; Li, Wen-Shiane; Fan, Yu-Lin; Wu, Ying-Tien

    2013-01-01

    This study presents an m-learning method that incorporates Integrated Quick Response (QR) codes. This learning method not only achieves the objectives of outdoor education, but it also increases applications of Cognitive Theory of Multimedia Learning (CTML) (Mayer, 2001) in m-learning for practical use in a diverse range of outdoor locations. When…

  16. Securing mobile code.

    SciTech Connect

    Link, Hamilton E.; Schroeppel, Richard Crabtree; Neumann, William Douglas; Campbell, Philip LaRoche; Beaver, Cheryl Lynn; Pierson, Lyndon George; Anderson, William Erik

    2004-10-01

    If software is designed so that the software can issue functions that will move that software from one computing platform to another, then the software is said to be 'mobile'. There are two general areas of security problems associated with mobile code. The 'secure host' problem involves protecting the host from malicious mobile code. The 'secure mobile code' problem, on the other hand, involves protecting the code from malicious hosts. This report focuses on the latter problem. We have found three distinct camps of opinions regarding how to secure mobile code. There are those who believe special distributed hardware is necessary, those who believe special distributed software is necessary, and those who believe neither is necessary. We examine all three camps, with a focus on the third. In the distributed software camp we examine some commonly proposed techniques including Java, D'Agents and Flask. For the specialized hardware camp, we propose a cryptographic technique for 'tamper-proofing' code over a large portion of the software/hardware life cycle by careful modification of current architectures. This method culminates by decrypting/authenticating each instruction within a physically protected CPU, thereby protecting against subversion by malicious code. Our main focus is on the camp that believes that neither specialized software nor hardware is necessary. We concentrate on methods of code obfuscation to render an entire program or a data segment on which a program depends incomprehensible. The hope is to prevent or at least slow down reverse engineering efforts and to prevent goal-oriented attacks on the software and execution. The field of obfuscation is still in a state of development with the central problem being the lack of a basis for evaluating the protection schemes. We give a brief introduction to some of the main ideas in the field, followed by an in depth analysis of a technique called 'white-boxing'. We put forth some new attacks and improvements

  17. Synthesis, Biological Evaluation and Molecular Modeling of Substituted Indeno[1,2-b]indoles as Inhibitors of Human Protein Kinase CK2

    PubMed Central

    Alchab, Faten; Ettouati, Laurent; Bouaziz, Zouhair; Bollacke, Andre; Delcros, Jean-Guy; Gertzen, Christoph G.W.; Gohlke, Holger; Pinaud, Noël; Marchivie, Mathieu; Guillon, Jean; Fenet, Bernard; Jose, Joachim; Le Borgne, Marc

    2015-01-01

    Due to their system of annulated 6-5-5-6-membered rings, indenoindoles have sparked great interest for the design of ATP-competitive inhibitors of human CK2. In the present study, we prepared twenty-one indeno[1,2-b]indole derivatives, all of which were tested in vitro on human CK2. The indenoindolones 5a and 5b inhibited human CK2 with an IC50 of 0.17 and 0.61 µM, respectively. The indeno[1,2-b]indoloquinone 7a also showed inhibitory activity on CK2 at a submicromolar range (IC50 = 0.43 µM). Additionally, a large number of indenoindole derivatives was evaluated for their cytotoxic activities against the cell lines 3T3, WI-38, HEK293T and MEF. PMID:26061121

  18. THE TRANSIT LIGHT-CURVE PROJECT. XIV. CONFIRMATION OF ANOMALOUS RADII FOR THE EXOPLANETS TrES-4b, HAT-P-3b, AND WASP-12b

    SciTech Connect

    Chan, Tucker; Ingemyr, Mikael; Winn, Joshua N.; Sanchis-Ojeda, Roberto; Holman, Matthew J.; Esquerdo, Gil; Everett, Mark

    2011-06-15

    We present transit photometry of three exoplanets, TrES-4b, HAT-P-3b, and WASP-12b, allowing for refined estimates of the systems' parameters. TrES-4b and WASP-12b were confirmed to be 'bloated' planets, with radii of 1.706 {+-} 0.056R{sub Jup} and 1.736 {+-} 0.092R{sub Jup}, respectively. These planets are too large to be explained with standard models of gas giant planets. In contrast, HAT-P-3b has a radius of 0.827 {+-} 0.055R{sub Jup}, smaller than a pure hydrogen-helium planet and indicative of a highly metal-enriched composition. Analyses of the transit timings revealed no significant departures from strict periodicity. For TrES-4, our relatively recent observations allow for improvement in the orbital ephemerides, which is useful for planning future observations.

  19. OPTICAL AND X-RAY OBSERVATIONS OF M31N 2007-12b: AN EXTRAGALACTIC RECURRENT NOVA WITH A DETECTED PROGENITOR?

    SciTech Connect

    Bode, M. F.; Darnley, M. J.; Hilton, T.; Shafter, A. W.; Page, K. L.; Smirnova, O.; Anupama, G. C.

    2009-11-01

    We report combined optical and X-ray observations of nova M31N 2007-12b. Optical spectroscopy obtained 5 days after the 2007 December outburst shows evidence of very high ejection velocities (FWHM Halpha approx = 4500 km s{sup -1}). In addition, Swift X-ray data show that M31N 2007-12b is associated with a Super-Soft Source (SSS) which appeared between 21 and 35 days post-outburst and turned off between then and day 169. Our analysis implies that M {sub WD} approx> 1.3 M {sub sun} in this system. The optical light curve, spectrum, and X-ray behavior are consistent with those of a recurrent nova. Hubble Space Telescope observations of the pre-outburst location of M31N 2007-12b reveal the presence of a coincident stellar source with magnitude and color very similar to the Galactic recurrent nova RS Ophiuchi at quiescence, where the red giant secondary dominates the emission. We believe that this is the first occasion on which a nova progenitor system has been identified in M31. However, the greatest similarities of outburst optical spectrum and SSS behavior are with the supposed Galactic recurrent nova V2491 Cygni. A previously implied association of M31N 2007-12b with nova M31N 1969-08a is shown to be erroneous, and this has important lessons for future searches for recurrent novae in extragalactic systems. Overall, we show that suitable complementary X-ray and optical observations can be used not only to identify recurrent nova candidates in M31, but also to determine subtypes and important physical parameters of these systems. Prospects are therefore good for extending studies of recurrent novae into the Local Group with the potential to explore in more detail such important topics as their proposed link to Type Ia Supernovae.

  20. SOPHIE velocimetry of Kepler transit candidates. XVI. Tomographic measurement of the low obliquity of KOI-12b, a warm Jupiter transiting a fast rotator

    NASA Astrophysics Data System (ADS)

    Bourrier, V.; Lecavelier des Etangs, A.; Hébrard, G.; Santerne, A.; Deleuil, M.; Almenara, J. M.; Barros, S. C. C.; Boisse, I.; Bonomo, A. S.; Bruno, G.; Courcol, B.; Diaz, R. F.; Montagnier, G.; Moutou, C.

    2015-07-01

    We present the detection and characterization of the transiting warm Jupiter KOI-12b, first identified with Kepler with an orbital period of 17.86 days. We combine the analysis of Kepler photometry with Doppler spectroscopy and line-profile tomography of time-series spectra obtained with the SOPHIE spectrograph to establish its planetary nature and derive its properties. To derive reliable estimates for the uncertainties on the tomographic model parameters, we devised an empirical method of calculating statistically independent error bars on the time-series spectra. KOI-12b has a radius of 1.43 ± 0.13 RJup and a 3σ upper mass limit of 10 MJup. It orbits a fast-rotating star (vsini⋆ = 60.0 ± 0.9 km s-1) with mass and radius of 1.45 ± 0.09 M⊙ and 1.63 ± 0.15 R⊙, located at 426 ± 40 pc from the Earth. Doppler tomography allowed higher precision on the obliquity to be reached by comparison with analysis of the Rossiter-McLaughlin radial velocity anomaly, and we find that KOI-12b lies on a prograde, slightly misaligned orbit with low sky-projected obliquity λ = 12.63.0-2.9°. The properties of this planetary system, with a 11.4 mag host star, make of KOI-12b a precious target for future atmospheric characterization. Tables 2 and 4 are available in electronic form at http://www.aanda.org

  1. An expanded calibration study of the explicitly correlated CCSD(T)-F12b method using large basis set standard CCSD(T) atomization energies

    NASA Astrophysics Data System (ADS)

    Feller, David; Peterson, Kirk A.

    2013-08-01

    The effectiveness of the recently developed, explicitly correlated coupled cluster method CCSD(T)-F12b is examined in terms of its ability to reproduce atomization energies derived from complete basis set extrapolations of standard CCSD(T). Most of the standard method findings were obtained with aug-cc-pV7Z or aug-cc-pV8Z basis sets. For a few homonuclear diatomic molecules it was possible to push the basis set to the aug-cc-pV9Z level. F12b calculations were performed with the cc-pVnZ-F12 (n = D, T, Q) basis set sequence and were also extrapolated to the basis set limit using a Schwenke-style, parameterized formula. A systematic bias was observed in the F12b method with the (VTZ-F12/VQZ-F12) basis set combination. This bias resulted in the underestimation of reference values associated with small molecules (valence correlation energies <0.5 Eh) and an even larger overestimation of atomization energies for bigger systems. Consequently, caution should be exercised in the use of F12b for high accuracy studies. Root mean square and mean absolute deviation error metrics for this basis set combination were comparable to complete basis set values obtained with standard CCSD(T) and the aug-cc-pVDZ through aug-cc-pVQZ basis set sequence. However, the mean signed deviation was an order of magnitude larger. Problems partially due to basis set superposition error were identified with second row compounds which resulted in a weak performance for the smaller VDZ-F12/VTZ-F12 combination of basis sets.

  2. Division of Human Listeria monocytogenes Pulsed-Field Gel Electrophoresis (PFGE) Types Belonging to Lineage I (Serovar 4b, 1/2b, and 3b) into PFGE Groups.

    PubMed

    Lopez-Valladares, Gloria; Danielsson-Tham, Marie-Louise; Goering, Richard V; Tham, Wilhelm

    2015-05-01

    The 63 pulsed-field gel electrophoresis (PFGE) types identified among 427 clinical isolates of Listeria monocytogenes that were characterized in a previous study by serotyping and PFGE (AscI) could be further divided into 17 PFGE groups. While the 63 PFGE types, all part of lineage I, were established based on the number and distribution of all bands in each DNA profile, the 17 PFGE groups were based on the configuration of small bands with sizes <145.5 kb. The 30 PFGE types of L. monocytogenes serovar 4b isolates (n=334) were divided into 8 PFGE groups; the 32 PFGE types of serovar 1/2b isolates (n=90) and the serovar 3b isolates (n=3, 1 PFGE type) were divided into 9 PFGE groups. An association was observed between PFGE groups and serovars. L. monocytogenes isolates belonging to PFGE groups I, J, Q, R, X, Z, Ö-4, and Ö-5 all shared serovar 4b, whereas isolates from PFGE groups D, G, O, P, T, U, Ö-1, Ö-2, and Ö-3 shared serovar 1/2b. Small fragments <33.3 kb were nonvisible in all L. monocytogenes isolates. From the results of the present study, a procedure for accelerating the identification of PFGE types when analyzing new PFGE profiles can be suggested. Therefore, we propose a stepwise procedure to PFGE profiling by first identifying the PFGE group using the smaller band patterns <145.5 kb, and then determining PFGE types based on the band patterns >145.5 kb. PMID:25803595

  3. Phospho-ΔNp63α regulates AQP3, ALOX12B, CASP14 and CLDN1 expression through transcription and microRNA modulation.

    PubMed

    Ratovitski, Edward A

    2013-11-01

    Cisplatin-induced and ATM-phosphorylated (p)-ΔNp63α regulates the expression of epidermal differentiation and skin barrier regulators (AQP3, CASP14, ALOX12B, and CLDN1) in squamous cell carcinoma (SCC) cells by dual transcriptional and post-transcriptional mechanisms. We found that p-ΔNp63α bound to target gene promoters, and regulated the activity of the tested promoters in vitro. P-ΔNp63α was shown to upregulate miR-185-5p and downregulate let7-5p, which subsequently modulated AQP3, CASP14, ALOX12B and CLDN1 through their respective 3'-untranslated regions. The introduction of miR-185-5p into resistant SCC-11M cells, which are unable to phosphorylate ΔNp63α, render these cells more sensitive to cisplatin treatment. Further studies of the AQP3, CASP14, ALOX12B, and CLDN1 contributions to chemoresistance may assist in developing novel microRNA-based therapies for human SCC. PMID:24070899

  4. Effect of transverse magnetic fields on dose distribution and RBE of photon beams: comparing PENELOPE and EGS4 Monte Carlo codes

    NASA Astrophysics Data System (ADS)

    Nettelbeck, H.; Takacs, G. J.; Rosenfeld, A. B.

    2008-09-01

    The application of a strong transverse magnetic field to a volume undergoing irradiation by a photon beam can produce localized regions of dose enhancement and dose reduction. This study uses the PENELOPE Monte Carlo code to investigate the effect of a slice of uniform transverse magnetic field on a photon beam using different magnetic field strengths and photon beam energies. The maximum and minimum dose yields obtained in the regions of dose enhancement and dose reduction are compared to those obtained with the EGS4 Monte Carlo code in a study by Li et al (2001), who investigated the effect of a slice of uniform transverse magnetic field (1 to 20 Tesla) applied to high-energy photon beams. PENELOPE simulations yielded maximum dose enhancements and dose reductions as much as 111% and 77%, respectively, where most results were within 6% of the EGS4 result. Further PENELOPE simulations were performed with the Sheikh-Bagheri and Rogers (2002) input spectra for 6, 10 and 15 MV photon beams, yielding results within 4% of those obtained with the Mohan et al (1985) spectra. Small discrepancies between a few of the EGS4 and PENELOPE results prompted an investigation into the influence of the PENELOPE elastic scattering parameters C1 and C2 and low-energy electron and photon transport cut-offs. Repeating the simulations with smaller scoring bins improved the resolution of the regions of dose enhancement and dose reduction, especially near the magnetic field boundaries where the dose deposition can abruptly increase or decrease. This study also investigates the effect of a magnetic field on the low-energy electron spectrum that may correspond to a change in the radiobiological effectiveness (RBE). Simulations show that the increase in dose is achieved predominantly through the lower energy electron population.

  5. Reeds computer code

    NASA Technical Reports Server (NTRS)

    Bjork, C.

    1981-01-01

    The REEDS (rocket exhaust effluent diffusion single layer) computer code is used for the estimation of certain rocket exhaust effluent concentrations and dosages and their distributions near the Earth's surface following a rocket launch event. Output from REEDS is used in producing near real time air quality and environmental assessments of the effects of certain potentially harmful effluents, namely HCl, Al2O3, CO, and NO.

  6. On the decoder error probability of block codes

    NASA Technical Reports Server (NTRS)

    Cheung, Kar-Ming

    1992-01-01

    By using coding and combinational techniques, an explicit formula is derived which enumerates the complete weight distribution of decodable words of block codes using partially known weight distributions. Also an approximation formula for nonbinary block codes is obtained. These results in turn give exact and approximate expressions for the decoder error probability PE(u) of block codes.

  7. Low-Rate Turbo Codes for Deep-Space Communications

    NASA Technical Reports Server (NTRS)

    Divsalar, D.; Pollara, F.

    1995-01-01

    It is shown how turbo codes and decoders can be used to improve the coding gain for deep-space communications, while decreasing the decoding complexity with respect to the large constraint length convolutional codes currently in use. Similar code constructions were used to build multiple-encoder turbo codes. This generalizes the turbo decoding concept to a truly distributed decoding system.

  8. Coordinate estrogen-regulated instability of serum protein-coding messenger RNAs in Xenopus laevis.

    PubMed

    Pastori, R L; Moskaitis, J E; Buzek, S W; Schoenberg, D R

    1991-04-01

    Estrogen causes the cytoplasmic destabilization of albumin and gamma-fibrinogen mRNA in Xenopus laevis liver. The purpose of the present study was to determine whether mRNA destabilization is a generalized phenomenon in response to estrogen, or whether this process is restricted to a particular class of mRNAs. To address this, we have expanded our bank of serum protein-coding cDNA clones to include transferrin, the second protein of inter-alpha-trypsin inhibitor and clone 12B, for which there is no mammalian homolog. Together with albumin and gamma-fibrinogen, these represent more than 85% of the mRNAs encoding liver secreted proteins. Estrogen administration to male Xenopus or to liver explant cultures causes the generalized disappearance of all of these mRNAs. In contrast, estrogen has no effect on actin, ferritin, or poly(A)-binding protein mRNA, all of which encode intracellular proteins. We have previously demonstrated that albumin mRNA is degraded in both messenger ribonucleoprotein and polysome fractions. Sucrose gradient analysis demonstrates the same pattern for degradation of all other serum protein-coding mRNAs. Estrogen has no effect on the amounts or gradient distribution of actin, ferritin, or poly(A)-binding protein mRNA. We conclude that regulated destabilization of mRNAs encoding secreted proteins is a generalized phenomenon in response to estrogen stimulation of Xenopus liver. PMID:1922078

  9. Lidar-Radiometer Inversion Code (LIRIC) for the retrieval of vertical aerosol properties from combined lidar/radiometer data: development and distribution in EARLINET

    NASA Astrophysics Data System (ADS)

    Chaikovsky, Anatoli; Dubovik, Oleg; Holben, Brent; Bril, Andrey; Goloub, Philippe; Tanré, Didier; Pappalardo, Gelsomina; Wandinger, Ulla; Chaikovskaya, Ludmila; Denisov, Sergey; Grudo, Jan; Lopatin, Anton; Karol, Yana; Lapyonok, Tatsiana; Amiridis, Vassilis; Ansmann, Albert; Apituley, Arnoud; Allados-Arboledas, Lucas; Binietoglou, Ioannis; Boselli, Antonella; D'Amico, Giuseppe; Freudenthaler, Volker; Giles, David; José Granados-Muñoz, María; Kokkalis, Panayotis; Nicolae, Doina; Oshchepkov, Sergey; Papayannis, Alex; Perrone, Maria Rita; Pietruczuk, Alexander; Rocadenbosch, Francesc; Sicard, Michaël; Slutsker, Ilya; Talianu, Camelia; De Tomasi, Ferdinando; Tsekeri, Alexandra; Wagner, Janet; Wang, Xuan

    2016-03-01

    This paper presents a detailed description of LIRIC (LIdar-Radiometer Inversion Code) algorithm for simultaneous processing of coincident lidar and radiometric (sun photometric) observations for the retrieval of the aerosol concentration vertical profiles. As the lidar/radiometric input data we use measurements from European Aerosol Research Lidar Network (EARLINET) lidars and collocated sun-photometers of Aerosol Robotic Network (AERONET). The LIRIC data processing provides sequential inversion of the combined lidar and radiometric data. The algorithm starts with the estimations of column-integrated aerosol parameters from radiometric measurements followed by the retrieval of height dependent concentrations of fine and coarse aerosols from lidar signals using integrated column characteristics of aerosol layer as a priori constraints. The use of polarized lidar observations allows us to discriminate between spherical and non-spherical particles of the coarse aerosol mode.The LIRIC software package was implemented and tested at a number of EARLINET stations. Intercomparison of the LIRIC-based aerosol retrievals was performed for the observations by seven EARLINET lidars in Leipzig, Germany on 25 May 2009. We found close agreement between the aerosol parameters derived from different lidars that supports high robustness of the LIRIC algorithm. The sensitivity of the retrieval results to the possible reduction of the available observation data is also discussed.

  10. Investigation of Near Shannon Limit Coding Schemes

    NASA Technical Reports Server (NTRS)

    Kwatra, S. C.; Kim, J.; Mo, Fan

    1999-01-01

    Turbo codes can deliver performance that is very close to the Shannon limit. This report investigates algorithms for convolutional turbo codes and block turbo codes. Both coding schemes can achieve performance near Shannon limit. The performance of the schemes is obtained using computer simulations. There are three sections in this report. First section is the introduction. The fundamental knowledge about coding, block coding and convolutional coding is discussed. In the second section, the basic concepts of convolutional turbo codes are introduced and the performance of turbo codes, especially high rate turbo codes, is provided from the simulation results. After introducing all the parameters that help turbo codes achieve such a good performance, it is concluded that output weight distribution should be the main consideration in designing turbo codes. Based on the output weight distribution, the performance bounds for turbo codes are given. Then, the relationships between the output weight distribution and the factors like generator polynomial, interleaver and puncturing pattern are examined. The criterion for the best selection of system components is provided. The puncturing pattern algorithm is discussed in detail. Different puncturing patterns are compared for each high rate. For most of the high rate codes, the puncturing pattern does not show any significant effect on the code performance if pseudo - random interleaver is used in the system. For some special rate codes with poor performance, an alternative puncturing algorithm is designed which restores their performance close to the Shannon limit. Finally, in section three, for iterative decoding of block codes, the method of building trellis for block codes, the structure of the iterative decoding system and the calculation of extrinsic values are discussed.

  11. Prioritized LT Codes

    NASA Technical Reports Server (NTRS)

    Woo, Simon S.; Cheng, Michael K.

    2011-01-01

    The original Luby Transform (LT) coding scheme is extended to account for data transmissions where some information symbols in a message block are more important than others. Prioritized LT codes provide unequal error protection (UEP) of data on an erasure channel by modifying the original LT encoder. The prioritized algorithm improves high-priority data protection without penalizing low-priority data recovery. Moreover, low-latency decoding is also obtained for high-priority data due to fast encoding. Prioritized LT codes only require a slight change in the original encoding algorithm, and no changes at all at the decoder. Hence, with a small complexity increase in the LT encoder, an improved UEP and low-decoding latency performance for high-priority data can be achieved. LT encoding partitions a data stream into fixed-sized message blocks each with a constant number of information symbols. To generate a code symbol from the information symbols in a message, the Robust-Soliton probability distribution is first applied in order to determine the number of information symbols to be used to compute the code symbol. Then, the specific information symbols are chosen uniform randomly from the message block. Finally, the selected information symbols are XORed to form the code symbol. The Prioritized LT code construction includes an additional restriction that code symbols formed by a relatively small number of XORed information symbols select some of these information symbols from the pool of high-priority data. Once high-priority data are fully covered, encoding continues with the conventional LT approach where code symbols are generated by selecting information symbols from the entire message block including all different priorities. Therefore, if code symbols derived from high-priority data experience an unusual high number of erasures, Prioritized LT codes can still reliably recover both high- and low-priority data. This hybrid approach decides not only "how to encode

  12. Applications of Coding in Network Communications

    ERIC Educational Resources Information Center

    Chang, Christopher SungWook

    2012-01-01

    This thesis uses the tool of network coding to investigate fast peer-to-peer file distribution, anonymous communication, robust network construction under uncertainty, and prioritized transmission. In a peer-to-peer file distribution system, we use a linear optimization approach to show that the network coding framework significantly simplifies…

  13. Development and validation of a liquid medium (M7H9C) for routine culture of Mycobacterium avium subsp. paratuberculosis to replace modified Bactec 12B medium.

    PubMed

    Whittington, Richard J; Whittington, Ann-Michele; Waldron, Anna; Begg, Douglas J; de Silva, Kumi; Purdie, Auriol C; Plain, Karren M

    2013-12-01

    Liquid culture of Mycobacterium avium subsp. paratuberculosis from clinical samples, such as feces, is the most sensitive antemortem test for the diagnosis of Johne's disease in ruminants. In Australia, New Zealand, the United States, and some other countries, the Bactec 460 system with modified Bactec 12B medium (Becton, Dickinson) has been the most commonly used liquid culture system, but it was discontinued in 2012. In this study, a new liquid culture medium, M7H9C, was developed. It consists of a Middlebrook 7H9 medium base with added Casitone, albumin, dextrose, catalase, egg yolk, mycobactin J, and a cocktail of antibiotics. We found that polyoxyethylene stearate (POES) was not essential for the cultivation of M. avium subsp. paratuberculosis in either the Bactec 12B or the M7H9C medium. The limit of detection determined using pure cultures of the C and S strains of M. avium subsp. paratuberculosis was 7 bacilli per 50 μl inoculum in the two media. The new medium was validated using 784 fecal and tissue samples from sheep and cattle, >25% of which contained viable M. avium subsp. paratuberculosis. Discrepant results for the clinical samples between the two media were mostly associated with samples that contained <10 viable bacilli per gram, but these results were relatively uncommon, and the performances of the two media were not significantly different. M7H9C medium was less than half the cost of the Bactec 12B medium and did not require regular examination during incubation, but a confirmatory IS900 PCR test had to be performed on every culture after the predetermined incubation period. PMID:24048541

  14. A Detection of Water in the Transmission Spectrum of the Hot Jupiter WASP-12b and Implications for Its Atmospheric Composition

    NASA Astrophysics Data System (ADS)

    Kreidberg, Laura; Line, Michael R.; Bean, Jacob L.; Stevenson, Kevin B.; Désert, Jean-Michel; Madhusudhan, Nikku; Fortney, Jonathan J.; Barstow, Joanna K.; Henry, Gregory W.; Williamson, Michael H.; Showman, Adam P.

    2015-11-01

    Detailed characterization of exoplanets has begun to yield measurements of their atmospheric properties that constrain the planets’ origins and evolution. For example, past observations of the dayside emission spectrum of the hot Jupiter WASP-12b indicated that its atmosphere has a high carbon-to-oxygen ratio (C/O > 1), suggesting it had a different formation pathway than is commonly assumed for giant planets. Here we report a precise near-infrared transmission spectrum for WASP-12b based on six transit observations with the Hubble Space Telescope/Wide Field Camera 3. We bin the data in 13 spectrophotometric light curves from 0.84 to 1.67 μm and measure the transit depths to a median precision of 51 ppm. We retrieve the atmospheric properties using the transmission spectrum and find strong evidence for water absorption (7σ confidence). This detection marks the first high-confidence, spectroscopic identification of a molecule in the atmosphere of WASP-12b. The retrieved 1 σ water volume mixing ratio is between 10-5 and 10-2, which is consistent with C/O > 1 to within 2σ. However, we also introduce a new retrieval parameterization that fits for C/O and metallicity under the assumption of chemical equilibrium. With this approach, we constrain C/O to {0.5}-0.3+0.2 at 1σ and rule out a carbon-rich atmosphere composition (C/O > 1) at >3σ confidence. Further observations and modeling of the planet’s global thermal structure and dynamics would aid in resolving the tension between our inferred C/O and previous constraints. Our findings highlight the importance of obtaining high-precision data with multiple observing techniques in order to obtain robust constraints on the chemistry and physics of exoplanet atmospheres.

  15. Development and Validation of a Liquid Medium (M7H9C) for Routine Culture of Mycobacterium avium subsp. paratuberculosis To Replace Modified Bactec 12B Medium

    PubMed Central

    Whittington, Ann-Michele; Waldron, Anna; Begg, Douglas J.; de Silva, Kumi; Purdie, Auriol C.; Plain, Karren M.

    2013-01-01

    Liquid culture of Mycobacterium avium subsp. paratuberculosis from clinical samples, such as feces, is the most sensitive antemortem test for the diagnosis of Johne's disease in ruminants. In Australia, New Zealand, the United States, and some other countries, the Bactec 460 system with modified Bactec 12B medium (Becton, Dickinson) has been the most commonly used liquid culture system, but it was discontinued in 2012. In this study, a new liquid culture medium, M7H9C, was developed. It consists of a Middlebrook 7H9 medium base with added Casitone, albumin, dextrose, catalase, egg yolk, mycobactin J, and a cocktail of antibiotics. We found that polyoxyethylene stearate (POES) was not essential for the cultivation of M. avium subsp. paratuberculosis in either the Bactec 12B or the M7H9C medium. The limit of detection determined using pure cultures of the C and S strains of M. avium subsp. paratuberculosis was 7 bacilli per 50 μl inoculum in the two media. The new medium was validated using 784 fecal and tissue samples from sheep and cattle, >25% of which contained viable M. avium subsp. paratuberculosis. Discrepant results for the clinical samples between the two media were mostly associated with samples that contained <10 viable bacilli per gram, but these results were relatively uncommon, and the performances of the two media were not significantly different. M7H9C medium was less than half the cost of the Bactec 12B medium and did not require regular examination during incubation, but a confirmatory IS900 PCR test had to be performed on every culture after the predetermined incubation period. PMID:24048541

  16. HAT-P-12b: A LOW-DENSITY SUB-SATURN MASS PLANET TRANSITING A METAL-POOR K DWARF

    SciTech Connect

    Hartman, J. D.; Bakos, G. A.; Torres, G.; Noyes, R. W.; Pal, A.; Latham, D. W.; Sipocz, B.; Esquerdo, G. A.; Sasselov, D. D.; Kovacs, Gabor; Stefanik, R. P.; Fernandez, J. M.; Kovacs, Geza; Fischer, D. A.; Johnson, J. A.; Marcy, G. W.; Howard, A. W.; Butler, R. P.; Lazar, J.; Papp, I.

    2009-11-20

    We report on the discovery of HAT-P-12b, a transiting extrasolar planet orbiting the moderately bright V approx 12.8 K4 dwarf GSC 03033 - 00706, with a period P = 3.2130598 +- 0.0000021 d, transit epoch T{sub c} = 2454419.19556 +- 0.00020 (BJD), and transit duration 0.0974 +- 0.0006 d. The host star has a mass of 0.73 +- 0.02 M{sub sun}, radius of 0.70{sup +0.02}{sub -0.01} R{sub sun}, effective temperature 4650 +- 60 K, and metallicity [Fe/H] = -0.29 +- 0.05. We find a slight correlation between the observed spectral line bisector spans and the radial velocity, so we consider, and rule out, various blend configurations including a blend with a background eclipsing binary, and hierarchical triple systems where the eclipsing body is a star or a planet. We conclude that a model consisting of a single star with a transiting planet best fits the observations, and show that a likely explanation for the apparent correlation is contamination from scattered moonlight. Based on this model, the planetary companion has a mass of 0.211 +- 0.012 M{sub J} and radius of 0.959{sup +0.029}{sub -0.021} R{sub J} yielding a mean density of 0.295 +- 0.025 g cm{sup -3}. Comparing these observations with recent theoretical models, we find that HAT-P-12b is consistent with a approx1-4.5 Gyr, mildly irradiated, H/He-dominated planet with a core mass M{sub C} approx< 10 M {sub +}. HAT-P-12b is thus the least massive H/He-dominated gas giant planet found to date. This record was previously held by Saturn.

  17. Maximal dinucleotide and trinucleotide circular codes.

    PubMed

    Michel, Christian J; Pellegrini, Marco; Pirillo, Giuseppe

    2016-01-21

    We determine here the number and the list of maximal dinucleotide and trinucleotide circular codes. We prove that there is no maximal dinucleotide circular code having strictly less than 6 elements (maximum size of dinucleotide circular codes). On the other hand, a computer calculus shows that there are maximal trinucleotide circular codes with less than 20 elements (maximum size of trinucleotide circular codes). More precisely, there are maximal trinucleotide circular codes with 14, 15, 16, 17, 18 and 19 elements and no maximal trinucleotide circular code having less than 14 elements. We give the same information for the maximal self-complementary dinucleotide and trinucleotide circular codes. The amino acid distribution of maximal trinucleotide circular codes is also determined. PMID:26382231

  18. Estimation of the release and migration of lead through soils and groundwater at the Hanford Site 218-E-12B Burial Ground. Volume 2, Appendices

    SciTech Connect

    Rhoads, K.; Bjornstad, B.N.; Lewis, R.E.; Teel, S.S.; Cantrell, K.J.; Serne, R.J.; Smoot, J.L.; Kincaid, C.T.; Wurstner, S.K.

    1992-10-01

    This report describes the technical basis for a groundwater transport analysis that was conducted to evaluate migration of potentially hazardous materials from the Hanford Site 218-E-12B burial ground. The analysis characterized the geologic, chemical, and hydrologic properties of the disposal site, and used that information to perform a screening analysis for transport of materials from the burial ground to downgradient groundwater locations and to the Columbia River. Subsequent sections of the appendix describe the geologic setting, geochemistry, and hydrology of the disposal site and their relationship to the transport analysis.

  19. Estimation of the release and migration of lead through soils and groundwater at the Hanford Site 218-E-12B Burial Ground

    SciTech Connect

    Rhoads, K.; Bjornstad, B.N.; Lewis, R.E.; Teel, S.S.; Cantrell, K.J.; Serne, R.J.; Smoot, J.L.; Kincaid, C.T.; Wurstner, S.K.

    1992-10-01

    This report describes the technical basis for a groundwater transport analysis that was conducted to evaluate migration of potentially hazardous materials from the Hanford Site 218-E-12B burial ground. The analysis characterized the geologic, chemical, and hydrologic properties of the disposal site, and used that information to perform a screening analysis for transport of materials from the burial ground to downgradient groundwater locations and to the Columbia River. Subsequent sections of the appendix describe the geologic setting, geochemistry, and hydrology of the disposal site and their relationship to the transport analysis.

  20. WARM SPITZER PHOTOMETRY OF THREE HOT JUPITERS: HAT-P-3b, HAT-P-4b AND HAT-P-12b

    SciTech Connect

    Todorov, Kamen O.; Deming, Drake; Knutson, Heather A.; Burrows, Adam; Fortney, Jonathan J.; Laughlin, Gregory; Lewis, Nikole K.; Cowan, Nicolas B.; Agol, Eric; Desert, Jean-Michel; Sada, Pedro V.; Charbonneau, David; Langton, Jonathan; Showman, Adam P.

    2013-06-20

    We present Warm Spitzer/IRAC secondary eclipse time series photometry of three short-period transiting exoplanets, HAT-P-3b, HAT-P-4b and HAT-P-12b, in both the available 3.6 and 4.5 {mu}m bands. HAT-P-3b and HAT-P-4b are Jupiter-mass objects orbiting an early K and an early G dwarf star, respectively. For HAT-P-3b we find eclipse depths of 0.112%+0.015%-0.030% (3.6 micron) and 0.094%+0.016%-0.009% (4.5 {mu}m). The HAT-P-4b values are 0.142%+0.014%-0.016% (3.6 micron) and 0.122%+0.012%-0.014% 4.5 {mu}m). The two planets' photometry is consistent with inefficient heat redistribution from their day to night sides (and low albedos), but it is inconclusive about possible temperature inversions in their atmospheres. HAT-P-12b is a Saturn-mass planet and is one of the coolest planets ever observed during secondary eclipse, along with the hot Neptune GJ 436b and the hot Saturn WASP-29b. We are able to place 3{sigma} upper limits on the secondary eclipse depth of HAT-P-12b in both wavelengths: <0.042% (3.6 {mu}m) and <0.085% (4.5 {mu}m). We discuss these results in the context of the Spitzer secondary eclipse measurements of GJ 436b and WASP-29b. It is possible that we do not detect the eclipses of HAT-P-12b due to high eccentricity, but find that weak planetary emission in these wavelengths is a more likely explanation. We place 3{sigma} upper limits on the |e cos {omega}| quantity (where e is eccentricity and {omega} is the argument of periapsis) for HAT-P-3b (<0.0081) and HAT-P-4b (<0.0042), based on the secondary eclipse timings.

  1. Exon Junction Complexes Show a Distributional Bias toward Alternatively Spliced mRNAs and against mRNAs Coding for Ribosomal Proteins.

    PubMed

    Hauer, Christian; Sieber, Jana; Schwarzl, Thomas; Hollerer, Ina; Curk, Tomaz; Alleaume, Anne-Marie; Hentze, Matthias W; Kulozik, Andreas E

    2016-08-01

    The exon junction complex (EJC) connects spliced mRNAs to posttranscriptional processes including RNA localization, transport, and regulated degradation. Here, we provide a comprehensive analysis of bona fide EJC binding sites across the transcriptome including all four RNA binding EJC components eIF4A3, BTZ, UPF3B, and RNPS1. Integration of these data sets permits definition of high-confidence EJC deposition sites as well as assessment of whether EJC heterogeneity drives alternative nonsense-mediated mRNA decay pathways. Notably, BTZ (MLN51 or CASC3) emerges as the EJC subunit that is almost exclusively bound to sites 20-24 nucleotides upstream of exon-exon junctions, hence defining EJC positions. By contrast, eIF4A3, UPF3B, and RNPS1 display additional RNA binding sites suggesting accompanying non-EJC functions. Finally, our data show that EJCs are largely distributed across spliced RNAs in an orthodox fashion, with two notable exceptions: an EJC deposition bias in favor of alternatively spliced transcripts and against the mRNAs that encode ribosomal proteins. PMID:27475226

  2. Codes with special correlation.

    NASA Technical Reports Server (NTRS)

    Baumert, L. D.

    1964-01-01

    Uniform binary codes with special correlation including transorthogonality and simplex code, Hadamard matrices and difference sets uniform binary codes with special correlation including transorthogonality and simplex code, Hadamard matrices and difference sets

  3. Bandwidth efficient block codes for M-ary PSK modulation

    NASA Technical Reports Server (NTRS)

    Lin, Shu

    1987-01-01

    A class of bandwidth efficient block codes for M-ary PSK modulation is presented. A soft-decision decoding for this class of codes is devised. Some specific short codes for Quad Phase Shift Key (QPSK), 8-PSK and 16-PSK modulations are constructed. These codes have good minimum squared Euclidean distances and provide 2 to 5.8 dB coding gains over uncoded QPSK modulation without (or with little) bandwidth expansion. The complete weight distributions of these specific codes are determined. Based on these weight distributions, their error probabilities are evaluated. Some of these codes have simple trellis structures and hence can be decoded by Viterbi decoding algorithm with relatively simple implementation. Moreover, the codes are very suitable for use as inner codes for various cascaded coding schemes with Reed-Solomon codes as outer codes.

  4. Distribution of drb genes coding for Dr binding adhesins among uropathogenic and fecal Escherichia coli isolates and identification of new subtypes.

    PubMed Central

    Zhang, L; Foxman, B; Tallman, P; Cladera, E; Le Bouguenec, C; Marrs, C F

    1997-01-01

    The Dr family of related adherence structures, some fimbriated and others afimbriated, bind to decay-accelerating factor molecules on human cells. Dr is associated with recurring urinary tract infection (UTI), but the distribution of Dr subtypes among uropathogenic Escherichia coli causing UTI among otherwise healthy women has yet to be described. A total of 787 UTI and fecal E. coli isolates from college women were screened for the presence of Dr sequences (drb). Fifteen percent of UTI strains were drb positive, compared to 5% of fecal strains. The adhesin (E gene) subtype of each drb-positive strain was determined by type-specific PCR followed by restriction enzyme analysis. Among 78 drb-positive strains, we found 14 (18%) afaE1, 1 (1.3%) afaE2, 1 (1.3%) afaE3, 9 (12%) draE, 9 (12%) draE-afaE3 hybrid, 1 (1.3%) daaE, 32 (41%) afaE5, 4 (5.1%) F131 E gene-like, and 7 untypeable strains. All untypeable E genes were cloned and sequenced, revealing four additional new classes of E genes, including two similar to the previously identified nonfimbrial E series. While a great range of diversity exists among the E genes, restriction fragment length polymorphism analysis demonstrated that all of these drb operons share a highly conserved gene structure. The most common subtype, afaE5, occurred three times as often among UTI than fecal strains. Over half of the drb-positive strains and 80% of those positive for afaE5 have the same virulence signature (positive for aer, kpsMT, ompT, and fim), suggesting an association of this profile with UTI pathogenesis. PMID:9169726

  5. Error-correction coding

    NASA Technical Reports Server (NTRS)

    Hinds, Erold W. (Principal Investigator)

    1996-01-01

    This report describes the progress made towards the completion of a specific task on error-correcting coding. The proposed research consisted of investigating the use of modulation block codes as the inner code of a concatenated coding system in order to improve the overall space link communications performance. The study proposed to identify and analyze candidate codes that will complement the performance of the overall coding system which uses the interleaved RS (255,223) code as the outer code.

  6. Converting potent indeno[1,2-b]indole inhibitors of protein kinase CK2 into selective inhibitors of the breast cancer resistance protein ABCG2.

    PubMed

    Jabor Gozzi, Gustavo; Bouaziz, Zouhair; Winter, Evelyn; Daflon-Yunes, Nathalia; Aichele, Dagmar; Nacereddine, Abdelhamid; Marminon, Christelle; Valdameri, Glaucio; Zeinyeh, Waël; Bollacke, Andre; Guillon, Jean; Lacoudre, Aline; Pinaud, Noël; Cadena, Silvia M; Jose, Joachim; Le Borgne, Marc; Di Pietro, Attilio

    2015-01-01

    A series of indeno[1,2-b]indole-9,10-dione derivatives were synthesized as human casein kinase II (CK2) inhibitors. The most potent inhibitors contained a N(5)-isopropyl substituent on the C-ring. The same series of compounds was found to also inhibit the breast cancer resistance protein ABCG2 but with totally different structure-activity relationships: a N(5)-phenethyl substituent was critical, and additional hydrophobic substituents at position 7 or 8 of the D-ring or a methoxy at phenethyl position ortho or meta also contributed to inhibition. The best ABCG2 inhibitors, such as 4c, 4h, 4i, 4j, and 4k, behaved as very weak inhibitors of CK2, whereas the most potent CK2 inhibitors, such as 4a, 4p, and 4e, displayed limited interaction with ABCG2. It was therefore possible to convert, through suitable substitutions of the indeno[1,2-b]indole-9,10-dione scaffold, potent CK2 inhibitors into selective ABCG2 inhibitors and vice versa. In addition, some of the best ABCG2 inhibitors, which displayed a very low cytotoxicity, thus giving a high therapeutic ratio, and appeared not to be transported, constitute promising candidates for further investigations. PMID:25272055

  7. Doubly Distributed Transactions

    2014-08-25

    Doubly Distributed Transactions (D2T) offers a technique for managing operations from a set of parallel clients with a collection of distributed services. It detects and manages faults. Example code with a test harness is also provided

  8. The NYU inverse swept wing code

    NASA Technical Reports Server (NTRS)

    Bauer, F.; Garabedian, P.; Mcfadden, G.

    1983-01-01

    An inverse swept wing code is described that is based on the widely used transonic flow program FLO22. The new code incorporates a free boundary algorithm permitting the pressure distribution to be prescribed over a portion of the wing surface. A special routine is included to calculate the wave drag, which can be minimized in its dependence on the pressure distribution. An alternate formulation of the boundary condition at infinity was introduced to enhance the speed and accuracy of the code. A FORTRAN listing of the code and a listing of a sample run are presented. There is also a user's manual as well as glossaries of input and output parameters.

  9. MILDOS uranium milling dose assessment code update.

    SciTech Connect

    LePoire, D. J.; Arnish, J. J.; Chen, S. Y.; Faillace, E. R.; Yuan, Y. C.; Schmidt, D. W.; Environmental Assessment; Washington Group International; NRC

    2001-11-01

    The MILDOS-AREA code was developed to estimate radiological doses and risks from uranium milling activities. The code has been used for demonstrating radiological compliance regarding the U.S. Nuclear Regulatory Commission's licensing requirements for uranium milling activities. The code was recently updated with an enhanced software package to address the following four areas: regulatory changes, in-situ leaching extraction technologies, software user interfaces, and software distribution technologies via the internet. Users can now specify in-situ leaching processes through a Windows object-based Geographic information System interface with incorporated updated regulation methodologies. The code and documentation are freely distributed through the Internet.

  10. Two susceptibility loci to Takayasu arteritis reveal a synergistic role of the IL12B and HLA-B regions in a Japanese population.

    PubMed

    Terao, Chikashi; Yoshifuji, Hajime; Kimura, Akinori; Matsumura, Takayoshi; Ohmura, Koichiro; Takahashi, Meiko; Shimizu, Masakazu; Kawaguchi, Takahisa; Chen, Zhiyong; Naruse, Taeko K; Sato-Otsubo, Aiko; Ebana, Yusuke; Maejima, Yasuhiro; Kinoshita, Hideyuki; Murakami, Kosaku; Kawabata, Daisuke; Wada, Yoko; Narita, Ichiei; Tazaki, Junichi; Kawaguchi, Yasushi; Yamanaka, Hisashi; Yurugi, Kimiko; Miura, Yasuo; Maekawa, Taira; Ogawa, Seishi; Komuro, Issei; Nagai, Ryozo; Yamada, Ryo; Tabara, Yasuharu; Isobe, Mitsuaki; Mimori, Tsuneyo; Matsuda, Fumihiko

    2013-08-01

    Takayasu arteritis (TAK) is an autoimmune systemic vasculitis of unknown etiology. Although previous studies have revealed that HLA-B*52:01 has an effect on TAK susceptibility, no other genetic determinants have been established so far. Here, we performed genome scanning of 167 TAK cases and 663 healthy controls via Illumina Infinium Human Exome BeadChip arrays, followed by a replication study consisting of 212 TAK cases and 1,322 controls. As a result, we found that the IL12B region on chromosome 5 (rs6871626, overall p = 1.7 × 10(-13), OR = 1.75, 95% CI 1.42-2.16) and the MLX region on chromosome 17 (rs665268, overall p = 5.2 × 10(-7), OR = 1.50, 95% CI 1.28-1.76) as well as the HLA-B region (rs9263739, a proxy of HLA-B*52:01, overall p = 2.8 × 10(-21), OR = 2.44, 95% CI 2.03-2.93) exhibited significant associations. A significant synergistic effect of rs6871626 and rs9263739 was found with a relative excess risk of 3.45, attributable proportion of 0.58, and synergy index of 3.24 (p ≤ 0.00028) in addition to a suggestive synergistic effect between rs665268 and rs926379 (p ≤ 0.027). We also found that rs6871626 showed a significant association with clinical manifestations of TAK, including increased risk and severity of aortic regurgitation, a representative severe complication of TAK. Detection of these susceptibility loci will provide new insights to the basic mechanisms of TAK pathogenesis. Our findings indicate that IL12B plays a fundamental role on the pathophysiology of TAK in combination with HLA-B(∗)52:01 and that common autoimmune mechanisms underlie the pathology of TAK and other autoimmune disorders such as psoriasis and inflammatory bowel diseases in which IL12B is involved as a genetic predisposing factor. PMID:23830516

  11. Exploring Atmospheres of Hot Mini-Neptunes and Extrasolar Giant Planets Orbiting Different Stars with Application to HD 97658b, WASP-12b, CoRoT-2b, XO-1b, and HD 189733b

    NASA Astrophysics Data System (ADS)

    Miguel, Y.; Kaltenegger, L.

    2014-01-01

    We calculated an atmospheric grid for hot mini-Neptune and giant exoplanets that links astrophysical observable parameters—orbital distance and stellar type—with the chemical atmospheric species expected. The grid can be applied to current and future observations to characterize exoplanet atmospheres and serves as a reference to interpret atmospheric retrieval analysis results. To build the grid, we developed a one-dimensional code for calculating the atmospheric thermal structure and linked it to a photochemical model that includes disequilibrium chemistry (molecular diffusion, vertical mixing, and photochemistry). We compare the thermal profiles and atmospheric composition of planets at different semimajor axes (0.01 AU <= a <= 0.1 AU) orbiting F, G, K, and M stars. Temperature and UV flux affect chemical species in the atmosphere. We explore which effects are due to temperature and which are due to stellar characteristics, showing the species most affected in each case. CH4 and H2O are the most sensitive to UV flux, H displaces H2 as the most abundant gas in the upper atmosphere for planets receiving a high UV flux. CH4 is more abundant for cooler planets. We explore vertical mixing, to inform degeneracies on our models and in the resulting spectral observables. For lower pressures, observable species like H2O or CO2 can indicate the efficiency of vertical mixing, with larger mixing ratios for a stronger mixing. By establishing the grid, testing the sensitivity of the results, and comparing our model to published results, our paper provides a tool to estimate what observations could yield. We apply our model to WASP-12b, CoRoT-2b, XO-1b, HD189733b, and HD97658b.

  12. Exploring atmospheres of hot mini-Neptune and extrasolar giant planets orbiting different stars with application to HD 97658b, WASP-12b, CoRoT-2b, XO-1b, and HD 189733b

    SciTech Connect

    Miguel, Y.; Kaltenegger, L.

    2014-01-10

    We calculated an atmospheric grid for hot mini-Neptune and giant exoplanets that links astrophysical observable parameters—orbital distance and stellar type—with the chemical atmospheric species expected. The grid can be applied to current and future observations to characterize exoplanet atmospheres and serves as a reference to interpret atmospheric retrieval analysis results. To build the grid, we developed a one-dimensional code for calculating the atmospheric thermal structure and linked it to a photochemical model that includes disequilibrium chemistry (molecular diffusion, vertical mixing, and photochemistry). We compare the thermal profiles and atmospheric composition of planets at different semimajor axes (0.01 AU ≤ a ≤ 0.1 AU) orbiting F, G, K, and M stars. Temperature and UV flux affect chemical species in the atmosphere. We explore which effects are due to temperature and which are due to stellar characteristics, showing the species most affected in each case. CH{sub 4} and H{sub 2}O are the most sensitive to UV flux, H displaces H{sub 2} as the most abundant gas in the upper atmosphere for planets receiving a high UV flux. CH{sub 4} is more abundant for cooler planets. We explore vertical mixing, to inform degeneracies on our models and in the resulting spectral observables. For lower pressures, observable species like H{sub 2}O or CO{sub 2} can indicate the efficiency of vertical mixing, with larger mixing ratios for a stronger mixing. By establishing the grid, testing the sensitivity of the results, and comparing our model to published results, our paper provides a tool to estimate what observations could yield. We apply our model to WASP-12b, CoRoT-2b, XO-1b, HD189733b, and HD97658b.

  13. Synthesis and Characterization of Two Unsymmetrical Indenofluorene Analogues: Benzo[5,6]-s-indaceno[1,2-b]thiophene and Benzo[5,6]-s-indaceno[2,1-b]thiophene.

    PubMed

    Marshall, Jonathan L; O'Neal, Nathaniel J; Zakharov, Lev N; Haley, Michael M

    2016-05-01

    The synthesis and characterization of two benzo-indaceno-thiophene compounds (anti-BIT and syn-BIT) are described. Two sequential Suzuki cross-couplings utilizing the halogen selectivity of this reaction permit modular assembly of unsymmetrical indeno[1,2-b]fluorene analogues. Analysis of their cyclic voltammetry and UV-vis spectra reveal that the optical and electrochemical properties of the BITs lie between those of indeno[1,2-b]fluorenes and indacenodithiophene. PMID:27014864

  14. Homological stabilizer codes

    SciTech Connect

    Anderson, Jonas T.

    2013-03-15

    In this paper we define homological stabilizer codes on qubits which encompass codes such as Kitaev's toric code and the topological color codes. These codes are defined solely by the graphs they reside on. This feature allows us to use properties of topological graph theory to determine the graphs which are suitable as homological stabilizer codes. We then show that all toric codes are equivalent to homological stabilizer codes on 4-valent graphs. We show that the topological color codes and toric codes correspond to two distinct classes of graphs. We define the notion of label set equivalencies and show that under a small set of constraints the only homological stabilizer codes without local logical operators are equivalent to Kitaev's toric code or to the topological color codes. - Highlights: Black-Right-Pointing-Pointer We show that Kitaev's toric codes are equivalent to homological stabilizer codes on 4-valent graphs. Black-Right-Pointing-Pointer We show that toric codes and color codes correspond to homological stabilizer codes on distinct graphs. Black-Right-Pointing-Pointer We find and classify all 2D homological stabilizer codes. Black-Right-Pointing-Pointer We find optimal codes among the homological stabilizer codes.

  15. Estimation of the release and migration of lead through soils and groundwater at the Hanford Site 218-E-12B Burial Ground. Volume 1, Final report

    SciTech Connect

    Rhoads, K.; Bjornstad, B.N.; Lewis, R.E.; Teel, S.S.; Cantrell, K.J.; Serne, R.J.; Smoot, J.L.; Kincaid, C.T.; Wurstner, S.K.

    1992-10-01

    This study was performed to evaluate the potential for transport of lead from the Hanford Site 218-E-12B Burial Ground to the surrounding surface- and groundwater. Burial of metal components containing nickel alloy steel and lead at this location may eventually result in release of lead to the subsurface environment, including groundwater aquifers that may be used for domestic and agricultural purposes in the future and, ultimately, to the Columbia River. The rate at which lead is transported to downgradient locations depends on a complex set of factors, such as climate, soil and groundwater chemistry, and the geologic and hydrologic configuration of the subsurface region between the burial ground and a potential receptor location. The groundwater transport analysis was conducted using a one-dimensional screening model with a relatively conservative matrix of parameters obtained from the hydrogeologic and geochemical studies.

  16. Estimation of the release and migration of lead through soils and groundwater at the Hanford Site 218-E-12B Burial Ground

    SciTech Connect

    Rhoads, K.; Bjornstad, B.N.; Lewis, R.E.; Teel, S.S.; Cantrell, K.J.; Serne, R.J.; Smoot, J.L.; Kincaid, C.T.; Wurstner, S.K.

    1992-10-01

    This study was performed to evaluate the potential for transport of lead from the Hanford Site 218-E-12B Burial Ground to the surrounding surface- and groundwater. Burial of metal components containing nickel alloy steel and lead at this location may eventually result in release of lead to the subsurface environment, including groundwater aquifers that may be used for domestic and agricultural purposes in the future and, ultimately, to the Columbia River. The rate at which lead is transported to downgradient locations depends on a complex set of factors, such as climate, soil and groundwater chemistry, and the geologic and hydrologic configuration of the subsurface region between the burial ground and a potential receptor location. The groundwater transport analysis was conducted using a one-dimensional screening model with a relatively conservative matrix of parameters obtained from the hydrogeologic and geochemical studies.

  17. Side-chain Engineering of Benzo[1,2-b:4,5-b’]dithiophene Core-structured Small Molecules for High-Performance Organic Solar Cells

    NASA Astrophysics Data System (ADS)

    Yin, Xinxing; An, Qiaoshi; Yu, Jiangsheng; Guo, Fengning; Geng, Yongliang; Bian, Linyi; Xu, Zhongsheng; Zhou, Baojing; Xie, Linghai; Zhang, Fujun; Tang, Weihua

    2016-05-01

    Three novel small molecules have been developed by side-chain engineering on benzo[1,2-b:4,5-b’]dithiophene (BDT) core. The typical acceptor-donor-acceptor (A-D-A) structure is adopted with 4,8-functionalized BDT moieties as core, dioctylterthiophene as π bridge and 3-ethylrhodanine as electron-withdrawing end group. Side-chain engineering on BDT core exhibits small but measurable effect on the optoelectronic properties of small molecules. Theoretical simulation and X-ray diffraction study reveal the subtle tuning of interchain distance between conjugated backbones has large effect on the charge transport and thus the photovoltaic performance of these molecules. Bulk-heterojunction solar cells fabricated with a configuration of ITO/PEDOT:PSS/SM:PC71BM/PFN/Al exhibit a highest power conversion efficiency (PCE) of 6.99% after solvent vapor annealing.

  18. Side-chain Engineering of Benzo[1,2-b:4,5-b’]dithiophene Core-structured Small Molecules for High-Performance Organic Solar Cells

    PubMed Central

    Yin, Xinxing; An, Qiaoshi; Yu, Jiangsheng; Guo, Fengning; Geng, Yongliang; Bian, Linyi; Xu, Zhongsheng; Zhou, Baojing; Xie, Linghai; Zhang, Fujun; Tang, Weihua

    2016-01-01

    Three novel small molecules have been developed by side-chain engineering on benzo[1,2-b:4,5-b’]dithiophene (BDT) core. The typical acceptor-donor-acceptor (A-D-A) structure is adopted with 4,8-functionalized BDT moieties as core, dioctylterthiophene as π bridge and 3-ethylrhodanine as electron-withdrawing end group. Side-chain engineering on BDT core exhibits small but measurable effect on the optoelectronic properties of small molecules. Theoretical simulation and X-ray diffraction study reveal the subtle tuning of interchain distance between conjugated backbones has large effect on the charge transport and thus the photovoltaic performance of these molecules. Bulk-heterojunction solar cells fabricated with a configuration of ITO/PEDOT:PSS/SM:PC71BM/PFN/Al exhibit a highest power conversion efficiency (PCE) of 6.99% after solvent vapor annealing. PMID:27140224

  19. Dibenzosiloles and 12H-indololo[3,2-d]naphtho[1,2-b][1]siloles: exploration of organic chromophores exhibiting efficient solid-state fluorescence.

    PubMed

    Shimizu, Masaki

    2015-02-01

    The construction of a diorganosilylene bridge over a biaryl moiety at the 2,2'-positions is a versatile strategy for fine-tuning its HOMO-LUMO energy gap, which is closely linked to the electronic and optical properties of the compounds. Therefore, there is growing interest in the use of silicon-bridged biaryl motifs as key cores of various types of advanced functional materials, such as light-emitting, semiconducting, photovoltaic, and sensing materials. To accelerate the advances of materials based on silicon-bridged biaryls, it is essential to create new classes of biaryls and explore their functions and properties. This Personal Account describes recent research on the development of organic chromophores based on functionalized dibenzosiloles and 12H-indololo[3,2-d]naphtho[1,2-b][1]siloles as solid-state emitters. PMID:25504808

  20. Side-chain Engineering of Benzo[1,2-b:4,5-b']dithiophene Core-structured Small Molecules for High-Performance Organic Solar Cells.

    PubMed

    Yin, Xinxing; An, Qiaoshi; Yu, Jiangsheng; Guo, Fengning; Geng, Yongliang; Bian, Linyi; Xu, Zhongsheng; Zhou, Baojing; Xie, Linghai; Zhang, Fujun; Tang, Weihua

    2016-01-01

    Three novel small molecules have been developed by side-chain engineering on benzo[1,2-b:4,5-b']dithiophene (BDT) core. The typical acceptor-donor-acceptor (A-D-A) structure is adopted with 4,8-functionalized BDT moieties as core, dioctylterthiophene as π bridge and 3-ethylrhodanine as electron-withdrawing end group. Side-chain engineering on BDT core exhibits small but measurable effect on the optoelectronic properties of small molecules. Theoretical simulation and X-ray diffraction study reveal the subtle tuning of interchain distance between conjugated backbones has large effect on the charge transport and thus the photovoltaic performance of these molecules. Bulk-heterojunction solar cells fabricated with a configuration of ITO/PEDOT:PSS/SM:PC71BM/PFN/Al exhibit a highest power conversion efficiency (PCE) of 6.99% after solvent vapor annealing. PMID:27140224

  1. Broad-band spectrophotometry of the hot Jupiter HAT-P-12b from the near-UV to the near-IR

    NASA Astrophysics Data System (ADS)

    Mallonn, M.; Nascimbeni, V.; Weingrill, J.; von Essen, C.; Strassmeier, K. G.; Piotto, G.; Pagano, I.; Scandariato, G.; Csizmadia, Sz.; Herrero, E.; Sada, P. V.; Dhillon, V. S.; Marsh, T. R.; Künstler, A.; Bernt, I.; Granzer, T.

    2015-11-01

    Context. The detection of trends or gradients in the transmission spectrum of extrasolar planets is possible with observations at very low spectral resolution. Transit measurements of sufficient accuracy using selected broad-band filters allow for an initial characterization of the atmosphere of the planet. Aims: We want to investigate the atmosphere of the hot Jupiter HAT-P-12b for an increased absorption at the very blue wavelength regions caused by scattering. Furthermore, we aim for a refinement of the transit parameters and the orbital ephemeris. Methods: We obtained time series photometry of 20 transit events and analyzed them homogeneously, along with eight light curves obtained from the literature. In total, the light curves span a range from 0.35 to 1.25 microns. During two observing seasons over four months each, we monitored the host star to constrain the potential influence of starspots on the derived transit parameters. Results: We rule out the presence of a Rayleigh slope extending over the entire optical wavelength range, a flat spectrum is favored for HAT-P-12b with respect to a cloud-free atmosphere model spectrum. A potential cause of such gray absorption is the presence of a cloud layer at the probed latitudes. Furthermore, in this work we refine the transit parameters, the ephemeris and perform a TTV analysis in which we found no indication for an unseen companion. The host star showed a mild non-periodic variability of up to 1%. However, no stellar rotation period could be detected to high confidence.

  2. Coding of Neuroinfectious Diseases.

    PubMed

    Barkley, Gregory L

    2015-12-01

    Accurate coding is an important function of neurologic practice. This contribution to Continuum is part of an ongoing series that presents helpful coding information along with examples related to the issue topic. Tips for diagnosis coding, Evaluation and Management coding, procedure coding, or a combination are presented, depending on which is most applicable to the subject area of the issue. PMID:26633789

  3. Model Children's Code.

    ERIC Educational Resources Information Center

    New Mexico Univ., Albuquerque. American Indian Law Center.

    The Model Children's Code was developed to provide a legally correct model code that American Indian tribes can use to enact children's codes that fulfill their legal, cultural and economic needs. Code sections cover the court system, jurisdiction, juvenile offender procedures, minor-in-need-of-care, and termination. Almost every Code section is…

  4. Turbo codes for deep-space communications

    NASA Technical Reports Server (NTRS)

    Divsalar, D.; Pollara, F.

    1995-01-01

    Turbo codes were recently proposed by Berrou, Glavieux, and Thitimajshima, and it has been claimed these codes achieve near-Shannon-limit error correction performance with relatively simple component codes and large interleavers. A required E(b)/N(o) of 0.7 dB was reported for a bit error rate of 10(exp -5), using a rate 1/2 turbo code. However, some important details that are necessary to reproduce these results were omitted. This article confirms the accuracy of these claims, and presents a complete description of an encoder/decoder pair that could be suitable for deep-space applications, where lower rate codes can be used. We describe a new simple method for trellis termination, analyze the effect of interleaver choice on the weight distribution of the code, and introduce the use of unequal rate component codes, which yield better performance.

  5. Development of probabilistic multimedia multipathway computer codes.

    SciTech Connect

    Yu, C.; LePoire, D.; Gnanapragasam, E.; Arnish, J.; Kamboj, S.; Biwer, B. M.; Cheng, J.-J.; Zielen, A. J.; Chen, S. Y.; Mo, T.; Abu-Eid, R.; Thaggard, M.; Sallo, A., III.; Peterson, H., Jr.; Williams, W. A.; Environmental Assessment; NRC; EM

    2002-01-01

    The deterministic multimedia dose/risk assessment codes RESRAD and RESRAD-BUILD have been widely used for many years for evaluation of sites contaminated with residual radioactive materials. The RESRAD code applies to the cleanup of sites (soils) and the RESRAD-BUILD code applies to the cleanup of buildings and structures. This work describes the procedure used to enhance the deterministic RESRAD and RESRAD-BUILD codes for probabilistic dose analysis. A six-step procedure was used in developing default parameter distributions and the probabilistic analysis modules. These six steps include (1) listing and categorizing parameters; (2) ranking parameters; (3) developing parameter distributions; (4) testing parameter distributions for probabilistic analysis; (5) developing probabilistic software modules; and (6) testing probabilistic modules and integrated codes. The procedures used can be applied to the development of other multimedia probabilistic codes. The probabilistic versions of RESRAD and RESRAD-BUILD codes provide tools for studying the uncertainty in dose assessment caused by uncertain input parameters. The parameter distribution data collected in this work can also be applied to other multimedia assessment tasks and multimedia computer codes.

  6. Software infrastructure progress in the RAVEN code

    SciTech Connect

    Cogliati, Joshua J.; Rabiti, Cristian; Permann, Cody J.

    2015-03-01

    The milestones have been achieved. RAVEN has been migrated to Gitlab which adds new abilities for code review and management. Standalone RAVEN framework packages have been created for OSX and two Linux distributions.

  7. Accumulate repeat accumulate codes

    NASA Technical Reports Server (NTRS)

    Abbasfar, Aliazam; Divsalar, Dariush; Yao, Kung

    2004-01-01

    In this paper we propose an innovative channel coding scheme called 'Accumulate Repeat Accumulate codes' (ARA). This class of codes can be viewed as serial turbo-like codes, or as a subclass of Low Density Parity Check (LDPC) codes, thus belief propagation can be used for iterative decoding of ARA codes on a graph. The structure of encoder for this class can be viewed as precoded Repeat Accumulate (RA) code or as precoded Irregular Repeat Accumulate (IRA) code, where simply an accumulator is chosen as a precoder. Thus ARA codes have simple, and very fast encoder structure when they representing LDPC codes. Based on density evolution for LDPC codes through some examples for ARA codes, we show that for maximum variable node degree 5 a minimum bit SNR as low as 0.08 dB from channel capacity for rate 1/2 can be achieved as the block size goes to infinity. Thus based on fixed low maximum variable node degree, its threshold outperforms not only the RA and IRA codes but also the best known LDPC codes with the dame maximum node degree. Furthermore by puncturing the accumulators any desired high rate codes close to code rate 1 can be obtained with thresholds that stay close to the channel capacity thresholds uniformly. Iterative decoding simulation results are provided. The ARA codes also have projected graph or protograph representation that allows for high speed decoder implementation.

  8. Concatenated Coding Using Trellis-Coded Modulation

    NASA Technical Reports Server (NTRS)

    Thompson, Michael W.

    1997-01-01

    In the late seventies and early eighties a technique known as Trellis Coded Modulation (TCM) was developed for providing spectrally efficient error correction coding. Instead of adding redundant information in the form of parity bits, redundancy is added at the modulation stage thereby increasing bandwidth efficiency. A digital communications system can be designed to use bandwidth-efficient multilevel/phase modulation such as Amplitude Shift Keying (ASK), Phase Shift Keying (PSK), Differential Phase Shift Keying (DPSK) or Quadrature Amplitude Modulation (QAM). Performance gain can be achieved by increasing the number of signals over the corresponding uncoded system to compensate for the redundancy introduced by the code. A considerable amount of research and development has been devoted toward developing good TCM codes for severely bandlimited applications. More recently, the use of TCM for satellite and deep space communications applications has received increased attention. This report describes the general approach of using a concatenated coding scheme that features TCM and RS coding. Results have indicated that substantial (6-10 dB) performance gains can be achieved with this approach with comparatively little bandwidth expansion. Since all of the bandwidth expansion is due to the RS code we see that TCM based concatenated coding results in roughly 10-50% bandwidth expansion compared to 70-150% expansion for similar concatenated scheme which use convolution code. We stress that combined coding and modulation optimization is important for achieving performance gains while maintaining spectral efficiency.

  9. Coset Codes Viewed as Terminated Convolutional Codes

    NASA Technical Reports Server (NTRS)

    Fossorier, Marc P. C.; Lin, Shu

    1996-01-01

    In this paper, coset codes are considered as terminated convolutional codes. Based on this approach, three new general results are presented. First, it is shown that the iterative squaring construction can equivalently be defined from a convolutional code whose trellis terminates. This convolutional code determines a simple encoder for the coset code considered, and the state and branch labelings of the associated trellis diagram become straightforward. Also, from the generator matrix of the code in its convolutional code form, much information about the trade-off between the state connectivity and complexity at each section, and the parallel structure of the trellis, is directly available. Based on this generator matrix, it is shown that the parallel branches in the trellis diagram of the convolutional code represent the same coset code C(sub 1), of smaller dimension and shorter length. Utilizing this fact, a two-stage optimum trellis decoding method is devised. The first stage decodes C(sub 1), while the second stage decodes the associated convolutional code, using the branch metrics delivered by stage 1. Finally, a bidirectional decoding of each received block starting at both ends is presented. If about the same number of computations is required, this approach remains very attractive from a practical point of view as it roughly doubles the decoding speed. This fact is particularly interesting whenever the second half of the trellis is the mirror image of the first half, since the same decoder can be implemented for both parts.

  10. The Integrated TIGER Series Codes

    2006-01-15

    ITS is a powerful and user-friendly software package permitting state-of-the-art Monte Carlo solution of linear time-independent coupled electron/photon radiation transport problems, with or without the presence of macroscopic electric and magnetic fields of arbitrary spatial dependence. Our goal has been to simultaneously maximize operational simplicity and physical accuracy. Through a set of preprocessor directives, the user selects one of the many ITS codes. The ease with which the makefile system is applied combines with anmore » input scheme based on order-independent descriptive keywords that makes maximum use of defaults and intemal error checking to provide experimentalists and theorists alike with a method for the routine but rigorous solution of sophisticated radiation transport problems. Physical rigor is provided by employing accurate cross sections, sampling distributions, and physical models for describing the production and transport of the electron/photon cascade from 1.0 GeV down to 1.0 keV. The availability of source code permits the more sophisticated user to tailor the codes to specific applications and to extend the capabilities of the codes to more complex applications. Version 5.0, the latest version of ITS, contains (1) improvements to the ITS 3.0 continuous-energy codes, (2) multigroup codes with adjoint transport capabilities, (3) parallel implementations of all ITS codes, (4) a general purpose geometry engine for linking with CAD or other geometry formats, and (5) the Cholla facet geometry library. Moreover, the general user friendliness of the software has been enhanced through increased internal error checking and improved code portability.« less

  11. The Integrated TIGER Series Codes

    SciTech Connect

    Kensek, Ronald P.; Franke, Brian C.; Laub, Thomas W.

    2006-01-15

    ITS is a powerful and user-friendly software package permitting state-of-the-art Monte Carlo solution of linear time-independent coupled electron/photon radiation transport problems, with or without the presence of macroscopic electric and magnetic fields of arbitrary spatial dependence. Our goal has been to simultaneously maximize operational simplicity and physical accuracy. Through a set of preprocessor directives, the user selects one of the many ITS codes. The ease with which the makefile system is applied combines with an input scheme based on order-independent descriptive keywords that makes maximum use of defaults and intemal error checking to provide experimentalists and theorists alike with a method for the routine but rigorous solution of sophisticated radiation transport problems. Physical rigor is provided by employing accurate cross sections, sampling distributions, and physical models for describing the production and transport of the electron/photon cascade from 1.0 GeV down to 1.0 keV. The availability of source code permits the more sophisticated user to tailor the codes to specific applications and to extend the capabilities of the codes to more complex applications. Version 5.0, the latest version of ITS, contains (1) improvements to the ITS 3.0 continuous-energy codes, (2) multigroup codes with adjoint transport capabilities, (3) parallel implementations of all ITS codes, (4) a general purpose geometry engine for linking with CAD or other geometry formats, and (5) the Cholla facet geometry library. Moreover, the general user friendliness of the software has been enhanced through increased internal error checking and improved code portability.

  12. Telescope Adaptive Optics Code

    SciTech Connect

    Phillion, D.

    2005-07-28

    The Telescope AO Code has general adaptive optics capabilities plus specialized models for three telescopes with either adaptive optics or active optics systems. It has the capability to generate either single-layer or distributed Kolmogorov turbulence phase screens using the FFT. Missing low order spatial frequencies are added using the Karhunen-Loeve expansion. The phase structure curve is extremely dose to the theoreUcal. Secondly, it has the capability to simulate an adaptive optics control systems. The default parameters are those of the Keck II adaptive optics system. Thirdly, it has a general wave optics capability to model the science camera halo due to scintillation from atmospheric turbulence and the telescope optics. Although this capability was implemented for the Gemini telescopes, the only default parameter specific to the Gemini telescopes is the primary mirror diameter. Finally, it has a model for the LSST active optics alignment strategy. This last model is highly specific to the LSST

  13. Discussion on LDPC Codes and Uplink Coding

    NASA Technical Reports Server (NTRS)

    Andrews, Ken; Divsalar, Dariush; Dolinar, Sam; Moision, Bruce; Hamkins, Jon; Pollara, Fabrizio

    2007-01-01

    This slide presentation reviews the progress that the workgroup on Low-Density Parity-Check (LDPC) for space link coding. The workgroup is tasked with developing and recommending new error correcting codes for near-Earth, Lunar, and deep space applications. Included in the presentation is a summary of the technical progress of the workgroup. Charts that show the LDPC decoder sensitivity to symbol scaling errors are reviewed, as well as a chart showing the performance of several frame synchronizer algorithms compared to that of some good codes and LDPC decoder tests at ESTL. Also reviewed is a study on Coding, Modulation, and Link Protocol (CMLP), and the recommended codes. A design for the Pseudo-Randomizer with LDPC Decoder and CRC is also reviewed. A chart that summarizes the three proposed coding systems is also presented.

  14. Manually operated coded switch

    DOEpatents

    Barnette, Jon H.

    1978-01-01

    The disclosure relates to a manually operated recodable coded switch in which a code may be inserted, tried and used to actuate a lever controlling an external device. After attempting a code, the switch's code wheels must be returned to their zero positions before another try is made.

  15. Binary primitive alternant codes

    NASA Technical Reports Server (NTRS)

    Helgert, H. J.

    1975-01-01

    In this note we investigate the properties of two classes of binary primitive alternant codes that are generalizations of the primitive BCH codes. For these codes we establish certain equivalence and invariance relations and obtain values of d and d*, the minimum distances of the prime and dual codes.

  16. Algebraic geometric codes

    NASA Technical Reports Server (NTRS)

    Shahshahani, M.

    1991-01-01

    The performance characteristics are discussed of certain algebraic geometric codes. Algebraic geometric codes have good minimum distance properties. On many channels they outperform other comparable block codes; therefore, one would expect them eventually to replace some of the block codes used in communications systems. It is suggested that it is unlikely that they will become useful substitutes for the Reed-Solomon codes used by the Deep Space Network in the near future. However, they may be applicable to systems where the signal to noise ratio is sufficiently high so that block codes would be more suitable than convolutional or concatenated codes.

  17. Bandwidth efficient CCSDS coding standard proposals

    NASA Technical Reports Server (NTRS)

    Costello, Daniel J., Jr.; Perez, Lance C.; Wang, Fu-Quan

    1992-01-01

    The basic concatenated coding system for the space telemetry channel consists of a Reed-Solomon (RS) outer code, a symbol interleaver/deinterleaver, and a bandwidth efficient trellis inner code. A block diagram of this configuration is shown. The system may operate with or without the outer code and interleaver. In this recommendation, the outer code remains the (255,223) RS code over GF(2 exp 8) with an error correcting capability of t = 16 eight bit symbols. This code's excellent performance and the existence of fast, cost effective, decoders justify its continued use. The purpose of the interleaver/deinterleaver is to distribute burst errors out of the inner decoder over multiple codewords of the outer code. This utilizes the error correcting capability of the outer code more efficiently and reduces the probability of an RS decoder failure. Since the space telemetry channel is not considered bursty, the required interleaving depth is primarily a function of the inner decoding method. A diagram of an interleaver with depth 4 that is compatible with the (255,223) RS code is shown. Specific interleaver requirements are discussed after the inner code recommendations.

  18. Bandwidth efficient CCSDS coding standard proposals

    NASA Astrophysics Data System (ADS)

    Costello, Daniel J., Jr.; Perez, Lance C.; Wang, Fu-Quan

    1992-05-01

    The basic concatenated coding system for the space telemetry channel consists of a Reed-Solomon (RS) outer code, a symbol interleaver/deinterleaver, and a bandwidth efficient trellis inner code. A block diagram of this configuration is shown. The system may operate with or without the outer code and interleaver. In this recommendation, the outer code remains the (255,223) RS code over GF(2 exp 8) with an error correcting capability of t = 16 eight bit symbols. This code's excellent performance and the existence of fast, cost effective, decoders justify its continued use. The purpose of the interleaver/deinterleaver is to distribute burst errors out of the inner decoder over multiple codewords of the outer code. This utilizes the error correcting capability of the outer code more efficiently and reduces the probability of an RS decoder failure. Since the space telemetry channel is not considered bursty, the required interleaving depth is primarily a function of the inner decoding method. A diagram of an interleaver with depth 4 that is compatible with the (255,223) RS code is shown. Specific interleaver requirements are discussed after the inner code recommendations.

  19. Turbo Codes with Modified Code Matched Interleaver for Coded-Cooperation in Half-Duplex Wireless Relay Networks

    NASA Astrophysics Data System (ADS)

    Ejaz, Saqib; Yang, Feng-Fan

    2015-03-01

    The parallel encoding and decoding structure of turbo codes makes them natural candidate for coded-cooperative scenarios. In this paper, we focus on one of the key components of turbo codes i.e., interleaver, and analyze its effect on the performance of coded-cooperative communication. The impact of an interleaver on the overall performance of cooperative systems depends on the type of an interleaver and its location in the cooperative encoding scheme. We consider code matched interleaver (CMI) as an optimum choice and present its role in a coded-cooperation scenario. The search and convergence of CMI for long interleaver sizes is an issue; therefore, a modification in the search conditions is included without any compromise on the performance of CMI. We also present analytical method to determine maximum S-constraint length for a CMI design. Further, we analyze the performance of two different encoding schemes of turbo codes, i.e., distributed turbo code (DTC) and distributed multiple turbo code (DMTC) after inclusion of CMI. Monte Carlo simulations show that CMI increases the diversity gain relative to other conventional interleavers such as uniform random interleaver. The channel is assumed to be Rayleigh fading among all communication nodes.

  20. Analysis of quantum error-correcting codes: Symplectic lattice codes and toric codes

    NASA Astrophysics Data System (ADS)

    Harrington, James William

    Quantum information theory is concerned with identifying how quantum mechanical resources (such as entangled quantum states) can be utilized for a number of information processing tasks, including data storage, computation, communication, and cryptography. Efficient quantum algorithms and protocols have been developed for performing some tasks (e.g. , factoring large numbers, securely communicating over a public channel, and simulating quantum mechanical systems) that appear to be very difficult with just classical resources. In addition to identifying the separation between classical and quantum computational power, much of the theoretical focus in this field over the last decade has been concerned with finding novel ways of encoding quantum information that are robust against errors, which is an important step toward building practical quantum information processing devices. In this thesis I present some results on the quantum error-correcting properties of oscillator codes (also described as symplectic lattice codes) and toric codes. Any harmonic oscillator system (such as a mode of light) can be encoded with quantum information via symplectic lattice codes that are robust against shifts in the system's continuous quantum variables. I show the existence of lattice codes whose achievable rates match the one-shot coherent information over the Gaussian quantum channel. Also, I construct a family of symplectic self-dual lattices and search for optimal encodings of quantum information distributed between several oscillators. Toric codes provide encodings of quantum information into two-dimensional spin lattices that are robust against local clusters of errors and which require only local quantum operations for error correction. Numerical simulations of this system under various error models provide a calculation of the accuracy threshold for quantum memory using toric codes, which can be related to phase transitions in certain condensed matter models. I also present

  1. Efficient all polymer solar cells employing donor polymer based on benzo[1,2-b:4,5-b']dithiophene unit

    NASA Astrophysics Data System (ADS)

    Ding, Guanqun; Yuan, Jianyu; Huang, Xiaodong; Liu, Zeke; Shi, Guozheng; Shi, Shaohua; Ding, Jiexiong; Wang, Hai-Qiao; Ma, Wanli

    2015-11-01

    We reported all polymer solar cells (all-PSCs) employing BDT-based donor-acceptor (D-A) polymers composed of benzo[1,2-b:4,5-b']dithiophene (BDT) and thiadiazolo[3,4-c]pyridine (PyTZ) (PBPT-8 and PBPT-12) as donor and NDI-based n-type polymer Poly{[N,N'-bis(2-octyldodecyl)-naphthalene-1,4,5,8-bis(dicarboximide)-2,6-diyl]-alt-5,5'-(2,2'-bithiophene)} (P(NDI2OD-T2)) (N2200) as acceptor. The influence of thermal annealing on the performance of all-PSCs was systematically investigated and discussed. It was found that the pre-annealing of the active blend films could significantly improve the all-PSCs performance. Both PBPT-8/PBPT-12:N2200 systems can deliver promising PCEs (4.12% and 4.25%) at the optimal annealing temperature of 160 oC due to the promoted film quality and charge transport properties. Morphology investigation and carrier mobility measurements have been carried out to analyze the effect of thermal annealing. This study suggests that BDT-based polymer:N2200 systems can be promising candidates for all-PSCs, with thermal annealing as an effective approach to promote the device performance.

  2. Stability of AB{prime}{sub 1/2}B{double{underscore}prime}{sub 1/2}O{sub 3} mixed perovskite proton conductors

    SciTech Connect

    Bhide, S.V.; Virkar, A.V.

    1999-12-01

    Several mixed perovskites of the type A{sub 2}B{prime}B{double{underscore}prime}O{sub 6} (AB{prime}{sub 1/2}B{double{underscore}prime}{sub 1/2}O{sub 3}), where A is Ba{sup +2} and B{prime} and B{double{underscore}prime} are trivalent and pentavalent ions, respectively, were synthesized by calcining requisite mixtures of BaCO{sub 3}, B{prime}{sub 2}O{sub 3}, and B{double{underscore}prime}{sub 2}O{sub 5} in air. X-ray diffraction confirmed the formation of the perovskite phase in each of the samples synthesized. The as-calcined powders were boiled in water to examine their stabilities in water. All mixed perovskites were found to be stable. By contrast, BaCeO{sub 3} and BaPrO{sub 3} decomposed when boiled in water while BaZrO{sub 3} was found to be stable. Madelung energies of simple and mixed perovskites were computed. The higher stability of mixed perovskites compared to simple perovskites of the type ABO{sub 3}, such as BaCeO{sub 3} and BaPrO{sub 3}, where B is a tetravalent ion, was rationalized on the basis of lower Madelung energies of mixed perovskites.

  3. Discovery of imidazo[1,2-b]pyridazine derivatives: selective and orally available Mps1 (TTK) kinase inhibitors exhibiting remarkable antiproliferative activity.

    PubMed

    Kusakabe, Ken-Ichi; Ide, Nobuyuki; Daigo, Yataro; Itoh, Takeshi; Yamamoto, Takahiko; Hashizume, Hiroshi; Nozu, Kohei; Yoshida, Hiroshi; Tadano, Genta; Tagashira, Sachie; Higashino, Kenichi; Okano, Yousuke; Sato, Yuji; Inoue, Makiko; Iguchi, Motofumi; Kanazawa, Takayuki; Ishioka, Yukichi; Dohi, Keiji; Kido, Yasuto; Sakamoto, Shingo; Ando, Shigeru; Maeda, Masahiro; Higaki, Masayo; Baba, Yoshiyasu; Nakamura, Yusuke

    2015-02-26

    Monopolar spindle 1 (Mps1) is an attractive oncology target due to its high expression level in cancer cells as well as the correlation of its expression levels with histological grades of cancers. An imidazo[1,2-a]pyrazine 10a was identified during an HTS campaign. Although 10a exhibited good biochemical activity, its moderate cellular as well as antiproliferative activities needed to be improved. The cocrystal structure of an analogue of 10a guided our lead optimization to introduce substituents at the 6-position of the scaffold, giving the 6-aryl substituted 21b which had improved cellular activity but no oral bioavailability in rat. Property-based optimization at the 6-position and a scaffold change led to the discovery of the imidazo[1,2-b]pyridazine-based 27f, an extremely potent (cellular Mps1 IC50 = 0.70 nM, A549 IC50 = 6.0 nM), selective Mps1 inhibitor over 192 kinases, which could be orally administered and was active in vivo. This 27f demonstrated remarkable antiproliferative activity in the nanomolar range against various tissue cancer cell lines. PMID:25625617

  4. Utilizing alkoxyphenyl substituents for side-chain engineering of efficient benzo[1,2-b:4,5-b']dithiophene-based small molecule organic solar cells.

    PubMed

    Du, Zhengkun; Chen, Weichao; Qiu, Meng; Chen, Yanhua; Wang, Ning; Wang, Ting; Sun, Mingliang; Yu, Donghong; Yang, Renqiang

    2015-07-14

    A new two-dimensional (2D) conjugated small molecule, namely DCA3TBDTP, with an alkoxyphenyl substituted benzo[1,2-b:4,5-b']dithiophene (BDT) unit as the central core, octyl cyanoacetate as the end-capped groups and terthiophene as the π-linked bridge, was designed and synthesized for solution-processed organic solar cells (OSCs) as an electron donor material, in which an alkoxyphenyl group was introduced as a weak electron-donating side chain of the BDT moiety. The DCA3TBDTP molecule exhibited good solubility, a deep highest occupied molecular orbital (HOMO) level (-5.25 eV), an appropriate optical band-gap (1.82 eV) and a high decomposition temperature (362 °C). By applying the simple solution spin-coating fabrication process, the bulk heterojunction (BHJ) OSCs based on DCA3TBDTP and [6,6]-phenyl-C61-butyric acid methyl ester (PC61BM) exhibited a good power conversion efficiency (PCE) of 4.51% with a high open-circuit voltage (Voc) of 0.90 V when thermal annealing at only 70 °C. PMID:26077329

  5. New benzo[1,2-b:4,5-b']dithiophene-based small molecules containing alkoxyphenyl side chains for high efficiency solution-processed organic solar cells.

    PubMed

    Du, Zhengkun; Chen, Weichao; Wen, Shuguang; Qiao, Shanlin; Liu, Qian; Ouyang, Dan; Wang, Ning; Bao, Xichang; Yang, Renqiang

    2014-12-01

    A new acceptor-donor-acceptor (A-D-A) small molecule, namely, BDT-PO-DPP, based on the alkoxyphenyl (PO)-substituted benzo[1,2-b:4,5-b']dithiophene (BDT) derivative and the diketopyrrolopyrrole (DPP) unit was synthesized as an electron donor for solution-processed small-molecule organic solar cells (SMOSCs). BDT-PO-DPP exhibited good thermal stability, with a 5 % weight-lost temperature at 401 °C under a nitrogen atmosphere. BDT-PO-DPP exhibited a lower HOMO energy level of -5.25 eV and a weaker aggregation ability than alkoxy-substituted BDT-O-DPP. A bulk heterojunction SMOSC device based on BDT-PO-DPP and [6,6]-phenyl-C61 -butyric acid methyl ester was prepared, and it showed a power conversion efficiency up to 5.63% with a high open-circuit voltage of 0.83 V, a short circuit current density of 11.23 mA cm(-2) , and a fill factor of 60.37% by using 1,2-dichlorobenzene as the co-solvent after thermal annealing at 110 °C. The results indicate that the alkoxyphenyl-substituted BDT derivative is a promising electron-donor building block for constructing highly efficient solution-processed SMOSCs. PMID:25346491

  6. Phenolic indeno[1,2-b]indoles as ABCG2-selective potent and non-toxic inhibitors stimulating basal ATPase activity

    PubMed Central

    Gozzi, Gustavo Jabor; Bouaziz, Zouhair; Winter, Evelyn; Daflon-Yunes, Nathalia; Honorat, Mylène; Guragossian, Nathalie; Marminon, Christelle; Valdameri, Glaucio; Bollacke, Andre; Guillon, Jean; Pinaud, Noël; Marchivie, Mathieu; Cadena, Silvia M; Jose, Joachim; Le Borgne, Marc; Di Pietro, Attilio

    2015-01-01

    Ketonic indeno[1,2-b]indole-9,10-dione derivatives, initially designed as human casein kinase II (CK2) inhibitors, were recently shown to be converted into efficient inhibitors of drug efflux by the breast cancer resistance protein ABCG2 upon suited substitutions including a N5-phenethyl on C-ring and hydrophobic groups on D-ring. A series of ten phenolic and seven p-quinonic derivatives were synthesized and screened for inhibition of both CK2 and ABCG2 activities. The best phenolic inhibitors were about threefold more potent against ABCG2 than the corresponding ketonic derivatives, and showed low cytotoxicity. They were selective for ABCG2 over both P-glycoprotein and MRP1 (multidrug resistance protein 1), whereas the ketonic derivatives also interacted with MRP1, and they additionally displayed a lower interaction with CK2. Quite interestingly, they strongly stimulated ABCG2 ATPase activity, in contrast to ketonic derivatives, suggesting distinct binding sites. In contrast, the p-quinonic indenoindoles were cytotoxic and poor ABCG2 inhibitors, whereas a partial inhibition recovery could be reached upon hydrophobic substitutions on D-ring, similarly to the ketonic derivatives. PMID:26170632

  7. Effect of Fluorine Substitution on Photovoltaic Properties of Alkoxyphenyl Substituted Benzo[1,2-b:4,5-b']dithiophene-Based Small Molecules.

    PubMed

    Qiu, Beibei; Yuan, Jun; Xiao, Xuxian; He, Dingjun; Qiu, Lixia; Zou, Yingping; Zhang, Zhi-guo; Li, Yongfang

    2015-11-18

    Two new small molecules, C3T-BDTP and C3T-BDTP-F with alkoxyphenyl-substituted benzo[1,2-b:4,5-b']dithiophene (BDT) and meta-fluorinated-alkoxyphenyl-substituted BDT as the central donor blocks, respectively, have been synthesized and used as donor materials in organic solar cells (OSCs). With the addition of 0.4% v/v 1,8-diiodooctane (DIO), the blend of C3T-BDTP-F/PC71BM showed a higher hole mobility of 8.67 × 10(-4) cm(2) V(-1) s(-1) compared to that of the blend of C3T-BDTP/PC71BM. Two types of interlayers, zirconium acetylacetonate (ZrAcac) and perylene diimide (PDI) derivatives (PDINO and PDIN), were used to further optimize the performance of OSCs. With a device structure of ITO/PEDOT:PSS/donor:PC71BM/PDIN/Al, the OSCs based on C3T-BDTP delivered a satisfying power conversion efficiency (PCE) of 5.27% with an open circuit voltage (V(oc)) of 0.91 V, whereas the devices based on C3T-BDTP-F showed an enhanced PCE of 5.42% with a higher V(oc) of 0.97 V. PMID:26517574

  8. ARA type protograph codes

    NASA Technical Reports Server (NTRS)

    Divsalar, Dariush (Inventor); Abbasfar, Aliazam (Inventor); Jones, Christopher R. (Inventor); Dolinar, Samuel J. (Inventor); Thorpe, Jeremy C. (Inventor); Andrews, Kenneth S. (Inventor); Yao, Kung (Inventor)

    2008-01-01

    An apparatus and method for encoding low-density parity check codes. Together with a repeater, an interleaver and an accumulator, the apparatus comprises a precoder, thus forming accumulate-repeat-accumulate (ARA codes). Protographs representing various types of ARA codes, including AR3A, AR4A and ARJA codes, are described. High performance is obtained when compared to the performance of current repeat-accumulate (RA) or irregular-repeat-accumulate (IRA) codes.

  9. QR Codes 101

    ERIC Educational Resources Information Center

    Crompton, Helen; LaFrance, Jason; van 't Hooft, Mark

    2012-01-01

    A QR (quick-response) code is a two-dimensional scannable code, similar in function to a traditional bar code that one might find on a product at the supermarket. The main difference between the two is that, while a traditional bar code can hold a maximum of only 20 digits, a QR code can hold up to 7,089 characters, so it can contain much more…

  10. A Construction of Lossy Source Code Using LDPC Matrices

    NASA Astrophysics Data System (ADS)

    Miyake, Shigeki; Muramatsu, Jun

    Research into applying LDPC code theory, which is used for channel coding, to source coding has received a lot of attention in several research fields such as distributed source coding. In this paper, a source coding problem with a fidelity criterion is considered. Matsunaga et al. and Martinian et al. constructed a lossy code under the conditions of a binary alphabet, a uniform distribution, and a Hamming measure of fidelity criterion. We extend their results and construct a lossy code under the extended conditions of a binary alphabet, a distribution that is not necessarily uniform, and a fidelity measure that is bounded and additive and show that the code can achieve the optimal rate, rate-distortion function. By applying a formula for the random walk on lattice to the analysis of LDPC matrices on Zq, where q is a prime number, we show that results similar to those for the binary alphabet condition hold for Zq, the multiple alphabet condition.

  11. Fluorescent taggants with temporally coded signatures.

    PubMed

    Wang, Siyang; Vyas, Raul; Dwyer, Chris

    2016-07-11

    In this paper, resonance energy transfer (RET) networks between chromophores are used to implement fluorescent taggants with temporally coded signatures. Because the temporal signature of such a fluorescent taggant is a phase-type distribution defined by the geometry of its RET network, the taggant design is not constrained by resolvable dyes and has a significantly larger coding capacity than spectrally or lifetime coded fluorescent taggants. Meanwhile, the detection process becomes highly efficient when the signatures are coded in the time domain. The taggant identification method is based on the multinomial distribution of detected photons and Maximum Likelihood Estimation, which guarantees high accuracy even with only a few hundred photons and also applies to a mixture of taggants in multiplex detection. Therefore, these temporally coded fluorescent taggants have great potential for both in situ and Lidar applications. PMID:27410827

  12. Identification of Mycobacterium tuberculosis and M. avium complex directly from smear-positive sputum specimens and BACTEC 12B cultures by high-performance liquid chromatography with fluorescence detection and computer-driven pattern recognition models.

    PubMed

    Jost, K C; Dunbar, D F; Barth, S S; Headley, V L; Elliott, L B

    1995-05-01

    A high-performance liquid chromatography method that utilized fluorescence detection (HPLC-FL) of mycolic acid 6,7-dimethoxycoumarin esters was developed to identify Mycobacterium tuberculosis (MTB) and M. avium complex (MAC) directly from fluorochrome stain smear-positive sputum specimens and young BACTEC 12B cultures. HPLC-FL chromatograms from a training set that included 202 smear-positive clinical sputum specimens and 343 mycobacterial cultures were used to construct a calibrated peak-naming table and computer-based pattern recognition models for MTB and MAC. Pattern recognition model performance was measured with an evaluation set of samples that included 251 smear-positive clinical sputum specimens and 167 BACTEC 12B cultures. Evaluation sputum specimens were culture positive for MTB (n = 132) and MAC (n = 48). With evaluation sputa, the MTB and MAC models were 56.8 and 33.3% sensitive, respectively. Evaluation set BACTEC 12B cultures were culture positive for MTB (n = 97) and MAC (n = 53). The sensitivities of the MTB and MAC models for identification of BACTEC 12B cultures were 99.0 and 94.3%, respectively. The specificity of both models was 100% for both types of evaluation samples. The average times from BACTEC 12B inoculation to cell harvest were 10.2 and 7.4 days for MTB and MAC, respectively. HPLC-FL can identify MTB and MAC in 1 day from many smear-positive sputa. Rapid and sensitive identification of MTB and MAC from young BACTEC 12B cultures was achieved. PMID:7615740

  13. Reversibility and efficiency in coding protein information.

    PubMed

    Tamir, Boaz; Priel, Avner

    2010-12-21

    Why the genetic code has a fixed length? Protein information is transferred by coding each amino acid using codons whose length equals 3 for all amino acids. Hence the most probable and the least probable amino acid get a codeword with an equal length. Moreover, the distributions of amino acids found in nature are not uniform and therefore the efficiency of such codes is sub-optimal. The origins of these apparently non-efficient codes are yet unclear. In this paper we propose an a priori argument for the energy efficiency of such codes resulting from their reversibility, in contrast to their time inefficiency. Such codes are reversible in the sense that a primitive processor, reading three letters in each step, can always reverse its operation, undoing its process. We examine the codes for the distributions of amino acids that exist in nature and show that they could not be both time efficient and reversible. We investigate a family of Zipf-type distributions and present their efficient (non-fixed length) prefix code, their graphs, and the condition for their reversibility. We prove that for a large family of such distributions, if the code is time efficient, it could not be reversible. In other words, if pre-biotic processes demand reversibility, the protein code could not be time efficient. The benefits of reversibility are clear: reversible processes are adiabatic, namely, they dissipate a very small amount of energy. Such processes must be done slowly enough; therefore time efficiency is non-important. It is reasonable to assume that early biochemical complexes were more prone towards energy efficiency, where forward and backward processes were almost symmetrical. PMID:20868696

  14. Upper and lower bounds on quantum codes

    NASA Astrophysics Data System (ADS)

    Smith, Graeme Stewart Baird

    This thesis provides bounds on the performance of quantum error correcting codes when used for quantum communication and quantum key distribution. The first two chapters provide a bare-bones introduction to classical and quantum error correcting codes, respectively. The next four chapters present achievable rates for quantum codes in various scenarios. The final chapter is dedicated to an upper bound on the quantum channel capacity. Chapter 3 studies coding for adversarial noise using quantum list codes, showing there exist quantum codes with high rates and short lists. These can be used, together with a very short secret key, to communicate with high fidelity at noise levels for which perfect fidelity is, impossible. Chapter 4 explores the performance of a family of degenerate codes when used to communicate over Pauli channels, showing they can be used to communicate over almost any Pauli channel at rates that are impossible for a nondegenerate code and that exceed those of previously known degenerate codes. By studying the scaling of the optimal block length as a function of the channel's parameters, we develop a heuristic for designing even better codes. Chapter 5 describes an equivalence between a family of noisy preprocessing protocols for quantum key distribution and entanglement distillation protocols whose target state belongs to a class of private states called "twisted states." In Chapter 6, the codes of Chapter 4 are combined with the protocols of Chapter 5 to provide higher key rates for one-way quantum key distribution than were previously thought possible. Finally, Chapter 7 presents a new upper bound on the quantum channel capacity that is both additive and convex, and which can be interpreted as the capacity of the channel for communication given access to side channels from a class of zero capacity "cloning" channels. This "clone assisted capacity" is equal to the unassisted capacity for channels that are degradable, which we use to find new upper

  15. AEST: Adaptive Eigenvalue Stability Code

    NASA Astrophysics Data System (ADS)

    Zheng, L.-J.; Kotschenreuther, M.; Waelbroeck, F.; van Dam, J. W.; Berk, H.

    2002-11-01

    An adaptive eigenvalue linear stability code is developed. The aim is on one hand to include the non-ideal MHD effects into the global MHD stability calculation for both low and high n modes and on the other hand to resolve the numerical difficulty involving MHD singularity on the rational surfaces at the marginal stability. Our code follows some parts of philosophy of DCON by abandoning relaxation methods based on radial finite element expansion in favor of an efficient shooting procedure with adaptive gridding. The δ W criterion is replaced by the shooting procedure and subsequent matrix eigenvalue problem. Since the technique of expanding a general solution into a summation of the independent solutions employed, the rank of the matrices involved is just a few hundreds. This makes easier to solve the eigenvalue problem with non-ideal MHD effects, such as FLR or even full kinetic effects, as well as plasma rotation effect, taken into account. To include kinetic effects, the approach of solving for the distribution function as a local eigenvalue ω problem as in the GS2 code will be employed in the future. Comparison of the ideal MHD version of the code with DCON, PEST, and GATO will be discussed. The non-ideal MHD version of the code will be employed to study as an application the transport barrier physics in tokamak discharges.

  16. Machine-Checked Sequencer for Critical Embedded Code Generator

    NASA Astrophysics Data System (ADS)

    Izerrouken, Nassima; Pantel, Marc; Thirioux, Xavier

    This paper presents the development of a correct-by-construction block sequencer for GeneAuto a qualifiable (according to DO178B/ED12B recommendation) automatic code generator. It transforms Simulink models to MISRA C code for safety critical systems. Our approach which combines classical development process and formal specification and verification using proof-assistants, led to preliminary fruitful exchanges with certification authorities. We present parts of the classical user and tools requirements and derived formal specifications, implementation and verification for the correctness and termination of the block sequencer. This sequencer has been successfully applied to real-size industrial use cases from various transportation domain partners and led to requirement errors detection and a correct-by-construction implementation.

  17. Asymmetric quantum convolutional codes

    NASA Astrophysics Data System (ADS)

    La Guardia, Giuliano G.

    2016-01-01

    In this paper, we construct the first families of asymmetric quantum convolutional codes (AQCCs). These new AQCCs are constructed by means of the CSS-type construction applied to suitable families of classical convolutional codes, which are also constructed here. The new codes have non-catastrophic generator matrices, and they have great asymmetry. Since our constructions are performed algebraically, i.e. we develop general algebraic methods and properties to perform the constructions, it is possible to derive several families of such codes and not only codes with specific parameters. Additionally, several different types of such codes are obtained.

  18. A 12b 200kS/s 0.52mA 0.47mm2 Algorithmic A/D Converter for MEMS Applications

    NASA Astrophysics Data System (ADS)

    Kim, Young-Ju; Choi, Hee-Cheol; Lee, Seung-Hoon; Cho, Dongil “Dan”

    This work describes a 12b 200kS/s 0.52mA 0.47mm2 ADC for sensor applications such as motor control, 3-phase power control, and CMOS image sensors simultaneously requiring ultra-low power and small size. The proposed ADC is based on the conventional algorithmic architecture with a recycling signal path to optimize sampling rate, resolution, chip area, and power consumption. The input SHA with eight input channels employs a folded-cascode amplifier to achieve a required DC gain and a high phase margin. A 3-D fully symmetric layout with critical signal lines shielded reduces the capacitor and device mismatch of the multiplying D/A converter while switched-bias power-reduction circuits minimize the power consumption of analog amplifiers. Current and voltage references are integrated on chip with optional off-chip voltage references for low glitch noise. The down-sampling clock signal selects the sampling rate of 200kS/s and 10kS/s with a further reduced power depending on applications. The prototype ADC in a 0.18μm n-well 1P6M CMOS process demonstrates a maximum measured DNL and INL within 0.40 LSB and 1.97 LSB and shows a maximum SNDR and SFDR of 55dB and 70dB at all sampling frequencies up to 200kS/s, respectively. The ADC occupies an active die area of 0.47mm2 and consumes 0.94mW at 200kS/s and 0.63mW at 10kS/s with a 1.8V supply.

  19. Transionospheric Propagation Code (TIPC)

    SciTech Connect

    Roussel-Dupre, R.; Kelley, T.A.

    1990-10-01

    The Transionospheric Propagation Code is a computer program developed at Los Alamos National Lab to perform certain tasks related to the detection of vhf signals following propagation through the ionosphere. The code is written in Fortran 77, runs interactively and was designed to be as machine independent as possible. A menu format in which the user is prompted to supply appropriate parameters for a given task has been adopted for the input while the output is primarily in the form of graphics. The user has the option of selecting from five basic tasks, namely transionospheric propagation, signal filtering, signal processing, DTOA study, and DTOA uncertainty study. For the first task a specified signal is convolved against the impulse response function of the ionosphere to obtain the transionospheric signal. The user is given a choice of four analytic forms for the input pulse or of supplying a tabular form. The option of adding Gaussian-distributed white noise of spectral noise to the input signal is also provided. The deterministic ionosphere is characterized to first order in terms of a total electron content (TEC) along the propagation path. In addition, a scattering model parameterized in terms of a frequency coherence bandwidth is also available. In the second task, detection is simulated by convolving a given filter response against the transionospheric signal. The user is given a choice of a wideband filter or a narrowband Gaussian filter. It is also possible to input a filter response. The third task provides for quadrature detection, envelope detection, and three different techniques for time-tagging the arrival of the transionospheric signal at specified receivers. The latter algorithms can be used to determine a TEC and thus take out the effects of the ionosphere to first order. Task four allows the user to construct a table of delta-times-of-arrival (DTOAs) vs TECs for a specified pair of receivers.

  20. Transionospheric Propagation Code (TIPC)

    NASA Astrophysics Data System (ADS)

    Roussel-Dupre, Robert; Kelley, Thomas A.

    1990-10-01

    The Transionospheric Propagation Code is a computer program developed at Los Alamos National Lab to perform certain tasks related to the detection of VHF signals following propagation through the ionosphere. The code is written in FORTRAN 77, runs interactively and was designed to be as machine independent as possible. A menu format in which the user is prompted to supply appropriate parameters for a given task has been adopted for the input while the output is primarily in the form of graphics. The user has the option of selecting from five basic tasks, namely transionospheric propagation, signal filtering, signal processing, delta times of arrival (DTOA) study, and DTOA uncertainty study. For the first task a specified signal is convolved against the impulse response function of the ionosphere to obtain the transionospheric signal. The user is given a choice of four analytic forms for the input pulse or of supplying a tabular form. The option of adding Gaussian-distributed white noise of spectral noise to the input signal is also provided. The deterministic ionosphere is characterized to first order in terms of a total electron content (TEC) along the propagation path. In addition, a scattering model parameterized in terms of a frequency coherence bandwidth is also available. In the second task, detection is simulated by convolving a given filter response against the transionospheric signal. The user is given a choice of a wideband filter or a narrowband Gaussian filter. It is also possible to input a filter response. The third task provides for quadrature detection, envelope detection, and three different techniques for time-tagging the arrival of the transionospheric signal at specified receivers. The latter algorithms can be used to determine a TEC and thus take out the effects of the ionosphere to first order. Task four allows the user to construct a table of DTOAs vs TECs for a specified pair of receivers.

  1. Cellulases and coding sequences

    DOEpatents

    Li, Xin-Liang; Ljungdahl, Lars G.; Chen, Huizhong

    2001-01-01

    The present invention provides three fungal cellulases, their coding sequences, recombinant DNA molecules comprising the cellulase coding sequences, recombinant host cells and methods for producing same. The present cellulases are from Orpinomyces PC-2.

  2. Cellulases and coding sequences

    DOEpatents

    Li, Xin-Liang; Ljungdahl, Lars G.; Chen, Huizhong

    2001-02-20

    The present invention provides three fungal cellulases, their coding sequences, recombinant DNA molecules comprising the cellulase coding sequences, recombinant host cells and methods for producing same. The present cellulases are from Orpinomyces PC-2.

  3. Multiple Turbo Codes

    NASA Technical Reports Server (NTRS)

    Divsalar, D.; Pollara, F.

    1995-01-01

    A description is given of multiple turbo codes and a suitable decoder structure derived from an approximation to the maximum a posteriori probability (MAP) decision rule, which is substantially different from the decoder for two-code-based encoders.

  4. QR Code Mania!

    ERIC Educational Resources Information Center

    Shumack, Kellie A.; Reilly, Erin; Chamberlain, Nik

    2013-01-01

    space, has error-correction capacity, and can be read from any direction. These codes are used in manufacturing, shipping, and marketing, as well as in education. QR codes can be created to produce…

  5. 1 CFR 12.2 - Code of Federal Regulations.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 1 General Provisions 1 2011-01-01 2011-01-01 false Code of Federal Regulations. 12.2 Section 12.2 General Provisions ADMINISTRATIVE COMMITTEE OF THE FEDERAL REGISTER AVAILABILITY OF OFFICE OF THE FEDERAL REGISTER PUBLICATIONS OFFICIAL DISTRIBUTION WITHIN FEDERAL GOVERNMENT § 12.2 Code of Federal Regulations. (a) Copies of the Code of...

  6. An Efficient Variable Length Coding Scheme for an IID Source

    NASA Technical Reports Server (NTRS)

    Cheung, K. -M.

    1995-01-01

    A scheme is examined for using two alternating Huffman codes to encode a discrete independent and identically distributed source with a dominant symbol. This combined strategy, or alternating runlength Huffman (ARH) coding, was found to be more efficient than ordinary coding in certain circumstances.

  7. Roanoke College Student Conduct Code 1990-91.

    ERIC Educational Resources Information Center

    Roanoke Coll., VA.

    This Roanoke College (Virginia) 1990-91 conduct code manual is intended for distribution to students. A reproduction of the Academic Integrity and Student Conduct Code Form which all students must sign leads off the document. A section detailing the student conduct code explains the delegation of authority within the institution and describes the…

  8. Pcigale: Porting Code Investigating Galaxy Emission to Python

    NASA Astrophysics Data System (ADS)

    Roehlly, Y.; Burgarella, D.; Buat, V.; Boquien, M.; Ciesla, L.; Heinis, S.

    2014-05-01

    We present pcigale, the port to Python of CIGALE (Code Investigating Galaxy Emission) a Fortran spectral energy distribution (SED) fitting code developed at the Laboratoire d'Astrophysique de Marseille. After recalling the specifics of the SED fitting method, we show the gains in modularity and versatility offered by Python, as well as the drawbacks compared to the compiled code.

  9. 1 CFR 12.2 - Code of Federal Regulations.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 1 General Provisions 1 2010-01-01 2010-01-01 false Code of Federal Regulations. 12.2 Section 12.2... REGISTER PUBLICATIONS OFFICIAL DISTRIBUTION WITHIN FEDERAL GOVERNMENT § 12.2 Code of Federal Regulations. (a) Copies of the Code of Federal Regulations in paper or microfiche form shall be made available...

  10. STEEP32 computer code

    NASA Technical Reports Server (NTRS)

    Goerke, W. S.

    1972-01-01

    A manual is presented as an aid in using the STEEP32 code. The code is the EXEC 8 version of the STEEP code (STEEP is an acronym for shock two-dimensional Eulerian elastic plastic). The major steps in a STEEP32 run are illustrated in a sample problem. There is a detailed discussion of the internal organization of the code, including a description of each subroutine.

  11. PLASMID-ENCODED PHTHALATE CATABOLIC PATHWAY IN ARTHROBACTER KEYSERI 12B: BIOTRANSFORMATIONS OF 2-SUBSTITUTED BENZOATES AND THEIR USE IN CLONING AND CHARACTERIZATION OF PHTHALATE CATABOLISM GENES AND GENE PRODUCTS

    EPA Science Inventory

    Several 2-substituted benzoates (including 2-trifluoromethyl-, 2-chloro-, 2-bromo-, 2-iodo-, 2-nitro-, 2-methoxy-, and 2-acetyl-benzoates) were converted by phthalate-grown Arthrobacter keyseri 12B to the corresponding 2-substituted 3,4-dihydroxybenzoates (protocatechuates)...

  12. Color code identification in coded structured light.

    PubMed

    Zhang, Xu; Li, Youfu; Zhu, Limin

    2012-08-01

    Color code is widely employed in coded structured light to reconstruct the three-dimensional shape of objects. Before determining the correspondence, a very important step is to identify the color code. Until now, the lack of an effective evaluation standard has hindered the progress in this unsupervised classification. In this paper, we propose a framework based on the benchmark to explore the new frontier. Two basic facets of the color code identification are discussed, including color feature selection and clustering algorithm design. First, we adopt analysis methods to evaluate the performance of different color features, and the order of these color features in the discriminating power is concluded after a large number of experiments. Second, in order to overcome the drawback of K-means, a decision-directed method is introduced to find the initial centroids. Quantitative comparisons affirm that our method is robust with high accuracy, and it can find or closely approach the global peak. PMID:22859022

  13. Software Certification - Coding, Code, and Coders

    NASA Technical Reports Server (NTRS)

    Havelund, Klaus; Holzmann, Gerard J.

    2011-01-01

    We describe a certification approach for software development that has been adopted at our organization. JPL develops robotic spacecraft for the exploration of the solar system. The flight software that controls these spacecraft is considered to be mission critical. We argue that the goal of a software certification process cannot be the development of "perfect" software, i.e., software that can be formally proven to be correct under all imaginable and unimaginable circumstances. More realistically, the goal is to guarantee a software development process that is conducted by knowledgeable engineers, who follow generally accepted procedures to control known risks, while meeting agreed upon standards of workmanship. We target three specific issues that must be addressed in such a certification procedure: the coding process, the code that is developed, and the skills of the coders. The coding process is driven by standards (e.g., a coding standard) and tools. The code is mechanically checked against the standard with the help of state-of-the-art static source code analyzers. The coders, finally, are certified in on-site training courses that include formal exams.

  14. Anti-tyrosinase, antioxidant, and antibacterial activities of novel 5-hydroxy-4-acetyl-2,3-dihydronaphtho[1,2-b]furans.

    PubMed

    Xia, Likai; Idhayadhulla, Akber; Lee, Yong Rok; Wee, Young-Jung; Kim, Sung Hong

    2014-10-30

    Novel 5-hydroxy-4-acetyl-2,3-dihydronaphtho[1,2-b]furans (7a-k) were synthesized using ceric ammonium nitrate (CAN)-catalyzed formal [3 + 2] cycloaddition. Synthesized compounds were evaluated for their tyrosinase inhibitory, antioxidant, and antibacterial activities. A modified spectrophotometric method using l-DOPA as substrate was used to determine tyrosinase inhibitory activities, and a 1,1-diphenyl-2-picrylhydrazyl (DPPH) assay was used to evaluate antioxidant properties. Antibacterial activities against gram-negative Escherichia coli (KCTC-1924) and gram-positive Staphylococcus aureus (KCTC-1916) were evaluated using the disc diffusion technique. Of the synthesized compounds, 7b with a 4-acetyl and an electron-enriched dihydronaphthofuran ring showed the highest tyrosinase-inhibition activity (IC50 = 8.91 μg/mL), which was comparable with that of standard kojic acid (IC50 = 10.16 μg/mL), potent antioxidant activity (IC50 = 3.33 μg/mL), which was comparable with that of BHT (IC50 = 34.67 μg/mL), and excellent antibacterial activities (MICs: 0.50 μg/mL against E. coli and S. aureus strains). A mechanistic analysis of 7b demonstrated that its tyrosinase inhibitory activity was reversible and competitive. Compounds 7c and 7d showed potent antioxidant activities (IC50: 6.30 and 5.01 μg/mL), and compound 7d also exhibited potent inhibitory activity against E. coli with a MIC of 0.5 μg/mL. Furthermore, compounds 7a, 7e, 7f, and 7i showed potent antibacterial activities against S. aureus with MICs of 0.5 μg/mL, which was comparable to that of ampicillin (MIC = 0.5 μg/mL). PMID:25218909

  15. DLLExternalCode

    SciTech Connect

    Greg Flach, Frank Smith

    2014-05-14

    DLLExternalCode is the a general dynamic-link library (DLL) interface for linking GoldSim (www.goldsim.com) with external codes. The overall concept is to use GoldSim as top level modeling software with interfaces to external codes for specific calculations. The DLLExternalCode DLL that performs the linking function is designed to take a list of code inputs from GoldSim, create an input file for the external application, run the external code, and return a list of outputs, read from files created by the external application, back to GoldSim. Instructions for creating the input file, running the external code, and reading the output are contained in an instructions file that is read and interpreted by the DLL.

  16. DLLExternalCode

    2014-05-14

    DLLExternalCode is the a general dynamic-link library (DLL) interface for linking GoldSim (www.goldsim.com) with external codes. The overall concept is to use GoldSim as top level modeling software with interfaces to external codes for specific calculations. The DLLExternalCode DLL that performs the linking function is designed to take a list of code inputs from GoldSim, create an input file for the external application, run the external code, and return a list of outputs, read frommore » files created by the external application, back to GoldSim. Instructions for creating the input file, running the external code, and reading the output are contained in an instructions file that is read and interpreted by the DLL.« less

  17. Multiple turbo codes for deep-space communications

    NASA Technical Reports Server (NTRS)

    Divsalar, D.; Pollara, F.

    1995-01-01

    In this article, we introduce multiple turbo codes and a suitable decoder structure derived from an approximation to the maximum a posteriori probability (MAP) decision rule, which is substantially different from the decoder for two-code-based encoders. We analyze the effect of interleaver choice on the weight distribution of the code, and we describe simulation results on the improved performance of these new codes.

  18. National Combustion Code Parallel Performance Enhancements

    NASA Technical Reports Server (NTRS)

    Quealy, Angela; Benyo, Theresa (Technical Monitor)

    2002-01-01

    The National Combustion Code (NCC) is being developed by an industry-government team for the design and analysis of combustion systems. The unstructured grid, reacting flow code uses a distributed memory, message passing model for its parallel implementation. The focus of the present effort has been to improve the performance of the NCC code to meet combustor designer requirements for model accuracy and analysis turnaround time. Improving the performance of this code contributes significantly to the overall reduction in time and cost of the combustor design cycle. This report describes recent parallel processing modifications to NCC that have improved the parallel scalability of the code, enabling a two hour turnaround for a 1.3 million element fully reacting combustion simulation on an SGI Origin 2000.

  19. Telescope Adaptive Optics Code

    2005-07-28

    The Telescope AO Code has general adaptive optics capabilities plus specialized models for three telescopes with either adaptive optics or active optics systems. It has the capability to generate either single-layer or distributed Kolmogorov turbulence phase screens using the FFT. Missing low order spatial frequencies are added using the Karhunen-Loeve expansion. The phase structure curve is extremely dose to the theoreUcal. Secondly, it has the capability to simulate an adaptive optics control systems. The defaultmore » parameters are those of the Keck II adaptive optics system. Thirdly, it has a general wave optics capability to model the science camera halo due to scintillation from atmospheric turbulence and the telescope optics. Although this capability was implemented for the Gemini telescopes, the only default parameter specific to the Gemini telescopes is the primary mirror diameter. Finally, it has a model for the LSST active optics alignment strategy. This last model is highly specific to the LSST« less

  20. Coded apertures for efficient pyroelectric motion tracking.

    PubMed

    Gopinathan, U; Brady, D; Pitsianis, N

    2003-09-01

    Coded apertures may be designed to modulate the visibility between source and measurement spaces such that the position of a source among N resolution cells may be discriminated using logarithm of N measurements. We use coded apertures as reference structures in a pyroelectric motion tracking system. This sensor system is capable of detecting source motion in one of the 15 cells uniformly distributed over a 1.6m x 1.6m domain using 4 pyroelectric detectors. PMID:19466102

  1. Random coding strategies for minimum entropy

    NASA Technical Reports Server (NTRS)

    Posner, E. C.

    1975-01-01

    This paper proves that there exists a fixed random coding strategy for block coding a memoryless information source to achieve the absolute epsilon entropy of the source. That is, the strategy can be chosen independent of the block length. The principal new tool is an easy result on the semicontinuity of the relative entropy functional of one probability distribution with respect to another. The theorem generalizes a result from rate-distortion theory to the 'zero-infinity' case.

  2. GeoPhysical Analysis Code

    2011-05-21

    GPAC is a code that integrates open source libraries for element formulations, linear algebra, and I/O with two main LLNL-Written components: (i) a set of standard finite elements physics solvers for rersolving Darcy fluid flow, explicit mechanics, implicit mechanics, and fluid-mediated fracturing, including resolution of contact both implicity and explicity, and (ii) a MPI-based parallelization implementation for use on generic HPC distributed memory architectures. The resultant code can be used alone for linearly elastic problemsmore » and problems involving hydraulic fracturing, where the mesh topology is dynamically changed. The key application domain is for low-rate stimulation and fracture control in subsurface reservoirs (e.g., enhanced geothermal sites and unconventional shale gas stimulation). GPAC also has interfaces to call external libraries for, e.g., material models and equations of state; however, LLNL-developed EOS and material models will not be part of the current release.« less

  3. GeoPhysical Analysis Code

    SciTech Connect

    2011-05-21

    GPAC is a code that integrates open source libraries for element formulations, linear algebra, and I/O with two main LLNL-Written components: (i) a set of standard finite elements physics solvers for rersolving Darcy fluid flow, explicit mechanics, implicit mechanics, and fluid-mediated fracturing, including resolution of contact both implicity and explicity, and (ii) a MPI-based parallelization implementation for use on generic HPC distributed memory architectures. The resultant code can be used alone for linearly elastic problems and problems involving hydraulic fracturing, where the mesh topology is dynamically changed. The key application domain is for low-rate stimulation and fracture control in subsurface reservoirs (e.g., enhanced geothermal sites and unconventional shale gas stimulation). GPAC also has interfaces to call external libraries for, e.g., material models and equations of state; however, LLNL-developed EOS and material models will not be part of the current release.

  4. Adaptive entropy coded subband coding of images.

    PubMed

    Kim, Y H; Modestino, J W

    1992-01-01

    The authors describe a design approach, called 2-D entropy-constrained subband coding (ECSBC), based upon recently developed 2-D entropy-constrained vector quantization (ECVQ) schemes. The output indexes of the embedded quantizers are further compressed by use of noiseless entropy coding schemes, such as Huffman or arithmetic codes, resulting in variable-rate outputs. Depending upon the specific configurations of the ECVQ and the ECPVQ over the subbands, many different types of SBC schemes can be derived within the generic 2-D ECSBC framework. Among these, the authors concentrate on three representative types of 2-D ECSBC schemes and provide relative performance evaluations. They also describe an adaptive buffer instrumented version of 2-D ECSBC, called 2-D ECSBC/AEC, for use with fixed-rate channels which completely eliminates buffer overflow/underflow problems. This adaptive scheme achieves performance quite close to the corresponding ideal 2-D ECSBC system. PMID:18296138

  5. Multi-level bandwidth efficient block modulation codes

    NASA Technical Reports Server (NTRS)

    Lin, Shu

    1989-01-01

    The multilevel technique is investigated for combining block coding and modulation. There are four parts. In the first part, a formulation is presented for signal sets on which modulation codes are to be constructed. Distance measures on a signal set are defined and their properties are developed. In the second part, a general formulation is presented for multilevel modulation codes in terms of component codes with appropriate Euclidean distances. The distance properties, Euclidean weight distribution and linear structure of multilevel modulation codes are investigated. In the third part, several specific methods for constructing multilevel block modulation codes with interdependency among component codes are proposed. Given a multilevel block modulation code C with no interdependency among the binary component codes, the proposed methods give a multilevel block modulation code C which has the same rate as C, a minimum squared Euclidean distance not less than that of code C, a trellis diagram with the same number of states as that of C and a smaller number of nearest neighbor codewords than that of C. In the last part, error performance of block modulation codes is analyzed for an AWGN channel based on soft-decision maximum likelihood decoding. Error probabilities of some specific codes are evaluated based on their Euclidean weight distributions and simulation results.

  6. Generating code adapted for interlinking legacy scalar code and extended vector code

    DOEpatents

    Gschwind, Michael K

    2013-06-04

    Mechanisms for intermixing code are provided. Source code is received for compilation using an extended Application Binary Interface (ABI) that extends a legacy ABI and uses a different register configuration than the legacy ABI. First compiled code is generated based on the source code, the first compiled code comprising code for accommodating the difference in register configurations used by the extended ABI and the legacy ABI. The first compiled code and second compiled code are intermixed to generate intermixed code, the second compiled code being compiled code that uses the legacy ABI. The intermixed code comprises at least one call instruction that is one of a call from the first compiled code to the second compiled code or a call from the second compiled code to the first compiled code. The code for accommodating the difference in register configurations is associated with the at least one call instruction.

  7. Mechanical code comparator

    DOEpatents

    Peter, Frank J.; Dalton, Larry J.; Plummer, David W.

    2002-01-01

    A new class of mechanical code comparators is described which have broad potential for application in safety, surety, and security applications. These devices can be implemented as micro-scale electromechanical systems that isolate a secure or otherwise controlled device until an access code is entered. This access code is converted into a series of mechanical inputs to the mechanical code comparator, which compares the access code to a pre-input combination, entered previously into the mechanical code comparator by an operator at the system security control point. These devices provide extremely high levels of robust security. Being totally mechanical in operation, an access control system properly based on such devices cannot be circumvented by software attack alone.

  8. Theory of epigenetic coding.

    PubMed

    Elder, D

    1984-06-01

    The logic of genetic control of development may be based on a binary epigenetic code. This paper revises the author's previous scheme dealing with the numerology of annelid metamerism in these terms. Certain features of the code had been deduced to be combinatorial, others not. This paradoxical contrast is resolved here by the interpretation that these features relate to different operations of the code; the combinatiorial to coding identity of units, the non-combinatorial to coding production of units. Consideration of a second paradox in the theory of epigenetic coding leads to a new solution which further provides a basis for epimorphic regeneration, and may in particular throw light on the "regeneration-duplication" phenomenon. A possible test of the model is also put forward. PMID:6748695

  9. Updating the Read Codes

    PubMed Central

    Robinson, David; Comp, Dip; Schulz, Erich; Brown, Philip; Price, Colin

    1997-01-01

    Abstract The Read Codes are a hierarchically-arranged controlled clinical vocabulary introduced in the early 1980s and now consisting of three maintained versions of differing complexity. The code sets are dynamic, and are updated quarterly in response to requests from users including clinicians in both primary and secondary care, software suppliers, and advice from a network of specialist healthcare professionals. The codes' continual evolution of content, both across and within versions, highlights tensions between different users and uses of coded clinical data. Internal processes, external interactions and new structural features implemented by the NHS Centre for Coding and Classification (NHSCCC) for user interactive maintenance of the Read Codes are described, and over 2000 items of user feedback episodes received over a 15-month period are analysed. PMID:9391934

  10. Doubled Color Codes

    NASA Astrophysics Data System (ADS)

    Bravyi, Sergey

    Combining protection from noise and computational universality is one of the biggest challenges in the fault-tolerant quantum computing. Topological stabilizer codes such as the 2D surface code can tolerate a high level of noise but implementing logical gates, especially non-Clifford ones, requires a prohibitively large overhead due to the need of state distillation. In this talk I will describe a new family of 2D quantum error correcting codes that enable a transversal implementation of all logical gates required for the universal quantum computing. Transversal logical gates (TLG) are encoded operations that can be realized by applying some single-qubit rotation to each physical qubit. TLG are highly desirable since they introduce no overhead and do not spread errors. It has been known before that a quantum code can have only a finite number of TLGs which rules out computational universality. Our scheme circumvents this no-go result by combining TLGs of two different quantum codes using the gauge-fixing method pioneered by Paetznick and Reichardt. The first code, closely related to the 2D color code, enables a transversal implementation of all single-qubit Clifford gates such as the Hadamard gate and the π / 2 phase shift. The second code that we call a doubled color code provides a transversal T-gate, where T is the π / 4 phase shift. The Clifford+T gate set is known to be computationally universal. The two codes can be laid out on the honeycomb lattice with two qubits per site such that the code conversion requires parity measurements for six-qubit Pauli operators supported on faces of the lattice. I will also describe numerical simulations of logical Clifford+T circuits encoded by the distance-3 doubled color code. Based on a joint work with Andrew Cross.

  11. Bar Code Labels

    NASA Technical Reports Server (NTRS)

    1988-01-01

    American Bar Codes, Inc. developed special bar code labels for inventory control of space shuttle parts and other space system components. ABC labels are made in a company-developed anodizing aluminum process and consecutively marketed with bar code symbology and human readable numbers. They offer extreme abrasion resistance and indefinite resistance to ultraviolet radiation, capable of withstanding 700 degree temperatures without deterioration and up to 1400 degrees with special designs. They offer high resistance to salt spray, cleaning fluids and mild acids. ABC is now producing these bar code labels commercially or industrial customers who also need labels to resist harsh environments.

  12. Tokamak Systems Code

    SciTech Connect

    Reid, R.L.; Barrett, R.J.; Brown, T.G.; Gorker, G.E.; Hooper, R.J.; Kalsi, S.S.; Metzler, D.H.; Peng, Y.K.M.; Roth, K.E.; Spampinato, P.T.

    1985-03-01

    The FEDC Tokamak Systems Code calculates tokamak performance, cost, and configuration as a function of plasma engineering parameters. This version of the code models experimental tokamaks. It does not currently consider tokamak configurations that generate electrical power or incorporate breeding blankets. The code has a modular (or subroutine) structure to allow independent modeling for each major tokamak component or system. A primary benefit of modularization is that a component module may be updated without disturbing the remainder of the systems code as long as the imput to or output from the module remains unchanged.

  13. FAA Smoke Transport Code

    SciTech Connect

    Domino, Stefan; Luketa-Hanlin, Anay; Gallegos, Carlos

    2006-10-27

    FAA Smoke Transport Code, a physics-based Computational Fluid Dynamics tool, which couples heat, mass, and momentum transfer, has been developed to provide information on smoke transport in cargo compartments with various geometries and flight conditions. The software package contains a graphical user interface for specification of geometry and boundary conditions, analysis module for solving the governing equations, and a post-processing tool. The current code was produced by making substantial improvements and additions to a code obtained from a university. The original code was able to compute steady, uniform, isothermal turbulent pressurization. In addition, a preprocessor and postprocessor were added to arrive at the current software package.

  14. Expander chunked codes

    NASA Astrophysics Data System (ADS)

    Tang, Bin; Yang, Shenghao; Ye, Baoliu; Yin, Yitong; Lu, Sanglu

    2015-12-01

    Chunked codes are efficient random linear network coding (RLNC) schemes with low computational cost, where the input packets are encoded into small chunks (i.e., subsets of the coded packets). During the network transmission, RLNC is performed within each chunk. In this paper, we first introduce a simple transfer matrix model to characterize the transmission of chunks and derive some basic properties of the model to facilitate the performance analysis. We then focus on the design of overlapped chunked codes, a class of chunked codes whose chunks are non-disjoint subsets of input packets, which are of special interest since they can be encoded with negligible computational cost and in a causal fashion. We propose expander chunked (EC) codes, the first class of overlapped chunked codes that have an analyzable performance, where the construction of the chunks makes use of regular graphs. Numerical and simulation results show that in some practical settings, EC codes can achieve rates within 91 to 97 % of the optimum and outperform the state-of-the-art overlapped chunked codes significantly.

  15. Effect of annealing on the structure and mechanical properties of the maraging steel N9K17M14-nanoamorphous alloy Co69Fe4Cr4Si12B11 composite material

    NASA Astrophysics Data System (ADS)

    Kolmakov, A. G.; Sevost'yanov, M. A.; Molokanov, V. V.; Zabolotnyi, V. T.; Umnov, P. P.; Umnova, N. V.

    2012-10-01

    The effect of annealing on the structure, mechanical properties, and fracture of a one-dimensional composite material consisting of a microwire made of maraging N9K17M14 steel with a surface layer of a eutectic soft magnetic Co69Fe4Cr4Si12B11 alloy is studied. The optimum temperature of annealing of the composite material is found; as a result, high strength characteristics are achieved at good plasticity. The composite material with a nanoamorphous layer is shown to have the high strength characteristics of the matrix maraging steel at significantly higher plasticity. When the Co69Fe4Cr4Si12B11 alloy is deformed in the composition of the composite material, it exhibits a plasticity effect, and this alloy fails in a brittle manner when deformed in the form of a wire or a ribbon. This effect becomes more pronounced upon annealing.

  16. Research on Universal Combinatorial Coding

    PubMed Central

    Lu, Jun; Zhang, Zhuo; Mo, Juan

    2014-01-01

    The conception of universal combinatorial coding is proposed. Relations exist more or less in many coding methods. It means that a kind of universal coding method is objectively existent. It can be a bridge connecting many coding methods. Universal combinatorial coding is lossless and it is based on the combinatorics theory. The combinational and exhaustive property make it closely related with the existing code methods. Universal combinatorial coding does not depend on the probability statistic characteristic of information source, and it has the characteristics across three coding branches. It has analyzed the relationship between the universal combinatorial coding and the variety of coding method and has researched many applications technologies of this coding method. In addition, the efficiency of universal combinatorial coding is analyzed theoretically. The multicharacteristic and multiapplication of universal combinatorial coding are unique in the existing coding methods. Universal combinatorial coding has theoretical research and practical application value. PMID:24772019

  17. Research on universal combinatorial coding.

    PubMed

    Lu, Jun; Zhang, Zhuo; Mo, Juan

    2014-01-01

    The conception of universal combinatorial coding is proposed. Relations exist more or less in many coding methods. It means that a kind of universal coding method is objectively existent. It can be a bridge connecting many coding methods. Universal combinatorial coding is lossless and it is based on the combinatorics theory. The combinational and exhaustive property make it closely related with the existing code methods. Universal combinatorial coding does not depend on the probability statistic characteristic of information source, and it has the characteristics across three coding branches. It has analyzed the relationship between the universal combinatorial coding and the variety of coding method and has researched many applications technologies of this coding method. In addition, the efficiency of universal combinatorial coding is analyzed theoretically. The multicharacteristic and multiapplication of universal combinatorial coding are unique in the existing coding methods. Universal combinatorial coding has theoretical research and practical application value. PMID:24772019

  18. Deformation and fracture of a composite material based on a high-strength maraging steel covered with a melt-quenched Co69Fe4Cr4Si12B11 alloy layer

    NASA Astrophysics Data System (ADS)

    Sevost'yanov, M. A.; Kolmakov, A. G.; Molokanov, V. V.; Zabolotnyi, V. T.; Umnov, P. P.; Umnova, N. V.

    2011-04-01

    Multifractal analysis is used to study the deformation and fracture of a promising composite material consisting of a wire base made of K17N9M14 maraging steel covered with a surface layer made from a Co69Fe4Cr4Si12B11 amorphous alloy. As compared to its components, this material has a substantially better set of the mechanical properties.

  19. Maximum likelihood decoding analysis of Accumulate-Repeat-Accumulate Codes

    NASA Technical Reports Server (NTRS)

    Abbasfar, Aliazam; Divsalar, Dariush; Yao, Kung

    2004-01-01

    Repeat-Accumulate (RA) codes are the simplest turbo-like codes that achieve good performance. However, they cannot compete with Turbo codes or low-density parity check codes (LDPC) as far as performance is concerned. The Accumulate Repeat Accumulate (ARA) codes, as a subclass of LDPC codes, are obtained by adding a pre-coder in front of RA codes with puncturing where an accumulator is chosen as a precoder. These codes not only are very simple, but also achieve excellent performance with iterative decoding. In this paper, the performance of these codes with (ML) decoding are analyzed and compared to random codes by very tight bounds. The weight distribution of some simple ARA codes is obtained, and through existing tightest bounds we have shown the ML SNR threshold of ARA codes approaches very closely to the performance of random codes. We have shown that the use of precoder improves the SNR threshold but interleaving gain remains unchanged with respect to RA code with puncturing.

  20. Detection of Mycobacterium avium subspecies paratuberculosis in patients with Crohn's disease is unrelated to the presence of single nucleotide polymorphisms rs2241880 (ATG16L1) and rs10045431 (IL12B).

    PubMed

    Dalton, James P; Desmond, Alan; Shanahan, Fergus; Hill, Colin

    2014-06-01

    Mycobacterium avium subspecies paratuberculosis (MAP) has been controversially linked with Crohn's disease (CD). Detection of MAP in CD has been highly variable, and one explanation might be the genetic heterogeneity of this syndrome. Many of the single nucleotide polymorphisms (SNPs) linked with CD are contained within genes that are associated with bacterial handling in general, and some are specifically implicated in susceptibility to mycobacterial disease. We tested a cohort of IBD patients (n = 149) to determine whether the presence of MAP was associated with a selection of these SNPs. Blood samples from CD patients (n = 84), ulcerative colitis (UC, n = 65) patients and healthy controls (n = 55) were examined for the presence of MAP and SNPs in ATG16L1, IL12B, NOD2/CARD15, NKx2-3, IL23R and IRGM. Statistical analysis was then used to determine whether there was any association between the presence of MAP and these SNPs. MAP, rs2241880 (ATG16L1) and rs10045431 (IL12B) were found to be significantly associated with CD. The presence of MAP was not related to the status of the SNPs in ATG16L1 or IL12B. We have found no evidence for the contribution of these SNPs to the presence of MAP in CD patients. PMID:24522266

  1. Synthesizing Certified Code

    NASA Technical Reports Server (NTRS)

    Whalen, Michael; Schumann, Johann; Fischer, Bernd

    2002-01-01

    Code certification is a lightweight approach to demonstrate software quality on a formal level. Its basic idea is to require producers to provide formal proofs that their code satisfies certain quality properties. These proofs serve as certificates which can be checked independently. Since code certification uses the same underlying technology as program verification, it also requires many detailed annotations (e.g., loop invariants) to make the proofs possible. However, manually adding theses annotations to the code is time-consuming and error-prone. We address this problem by combining code certification with automatic program synthesis. We propose an approach to generate simultaneously, from a high-level specification, code and all annotations required to certify generated code. Here, we describe a certification extension of AUTOBAYES, a synthesis tool which automatically generates complex data analysis programs from compact specifications. AUTOBAYES contains sufficient high-level domain knowledge to generate detailed annotations. This allows us to use a general-purpose verification condition generator to produce a set of proof obligations in first-order logic. The obligations are then discharged using the automated theorem E-SETHEO. We demonstrate our approach by certifying operator safety for a generated iterative data classification program without manual annotation of the code.

  2. Lichenase and coding sequences

    DOEpatents

    Li, Xin-Liang; Ljungdahl, Lars G.; Chen, Huizhong

    2000-08-15

    The present invention provides a fungal lichenase, i.e., an endo-1,3-1,4-.beta.-D-glucanohydrolase, its coding sequence, recombinant DNA molecules comprising the lichenase coding sequences, recombinant host cells and methods for producing same. The present lichenase is from Orpinomyces PC-2.

  3. Codes of Conduct

    ERIC Educational Resources Information Center

    Million, June

    2004-01-01

    Most schools have a code of conduct, pledge, or behavioral standards, set by the district or school board with the school community. In this article, the author features some schools that created a new vision of instilling code of conducts to students based on work quality, respect, safety and courtesy. She suggests that communicating the code…

  4. Code of Ethics

    ERIC Educational Resources Information Center

    Division for Early Childhood, Council for Exceptional Children, 2009

    2009-01-01

    The Code of Ethics of the Division for Early Childhood (DEC) of the Council for Exceptional Children is a public statement of principles and practice guidelines supported by the mission of DEC. The foundation of this Code is based on sound ethical reasoning related to professional practice with young children with disabilities and their families…

  5. Legacy Code Modernization

    NASA Technical Reports Server (NTRS)

    Hribar, Michelle R.; Frumkin, Michael; Jin, Haoqiang; Waheed, Abdul; Yan, Jerry; Saini, Subhash (Technical Monitor)

    1998-01-01

    Over the past decade, high performance computing has evolved rapidly; systems based on commodity microprocessors have been introduced in quick succession from at least seven vendors/families. Porting codes to every new architecture is a difficult problem; in particular, here at NASA, there are many large CFD applications that are very costly to port to new machines by hand. The LCM ("Legacy Code Modernization") Project is the development of an integrated parallelization environment (IPE) which performs the automated mapping of legacy CFD (Fortran) applications to state-of-the-art high performance computers. While most projects to port codes focus on the parallelization of the code, we consider porting to be an iterative process consisting of several steps: 1) code cleanup, 2) serial optimization,3) parallelization, 4) performance monitoring and visualization, 5) intelligent tools for automated tuning using performance prediction and 6) machine specific optimization. The approach for building this parallelization environment is to build the components for each of the steps simultaneously and then integrate them together. The demonstration will exhibit our latest research in building this environment: 1. Parallelizing tools and compiler evaluation. 2. Code cleanup and serial optimization using automated scripts 3. Development of a code generator for performance prediction 4. Automated partitioning 5. Automated insertion of directives. These demonstrations will exhibit the effectiveness of an automated approach for all the steps involved with porting and tuning a legacy code application for a new architecture.

  6. Modified JPEG Huffman coding.

    PubMed

    Lakhani, Gopal

    2003-01-01

    It is a well observed characteristic that when a DCT block is traversed in the zigzag order, the AC coefficients generally decrease in size and the run-length of zero coefficients increase in number. This article presents a minor modification to the Huffman coding of the JPEG baseline compression algorithm to exploit this redundancy. For this purpose, DCT blocks are divided into bands so that each band can be coded using a separate code table. Three implementations are presented, which all move the end-of-block marker up in the middle of DCT block and use it to indicate the band boundaries. Experimental results are presented to compare reduction in the code size obtained by our methods with the JPEG sequential-mode Huffman coding and arithmetic coding methods. The average code reduction to the total image code size of one of our methods is 4%. Our methods can also be used for progressive image transmission and hence, experimental results are also given to compare them with two-, three-, and four-band implementations of the JPEG spectral selection method. PMID:18237897

  7. Binary concatenated coding system

    NASA Technical Reports Server (NTRS)

    Monford, L. G., Jr.

    1973-01-01

    Coding, using 3-bit binary words, is applicable to any measurement having integer scale up to 100. System using 6-bit data words can be expanded to read from 1 to 10,000, and 9-bit data words can increase range to 1,000,000. Code may be ''read'' directly by observation after memorizing simple listing of 9's and 10's.

  8. Computerized mega code recording.

    PubMed

    Burt, T W; Bock, H C

    1988-04-01

    A system has been developed to facilitate recording of advanced cardiac life support mega code testing scenarios. By scanning a paper "keyboard" using a bar code wand attached to a portable microcomputer, the person assigned to record the scenario can easily generate an accurate, complete, timed, and typewritten record of the given situations and the obtained responses. PMID:3354937

  9. Coding for optical channels

    NASA Technical Reports Server (NTRS)

    Baumert, L. D.; Mceliece, R. J.; Rumsey, H., Jr.

    1979-01-01

    In a previous paper Pierce considered the problem of optical communication from a novel viewpoint, and concluded that performance will likely be limited by issues of coding complexity rather than by thermal noise. This paper reviews the model proposed by Pierce and presents some results on the analysis and design of codes for this application.

  10. Combustion chamber analysis code

    NASA Technical Reports Server (NTRS)

    Przekwas, A. J.; Lai, Y. G.; Krishnan, A.; Avva, R. K.; Giridharan, M. G.

    1993-01-01

    A three-dimensional, time dependent, Favre averaged, finite volume Navier-Stokes code has been developed to model compressible and incompressible flows (with and without chemical reactions) in liquid rocket engines. The code has a non-staggered formulation with generalized body-fitted-coordinates (BFC) capability. Higher order differencing methodologies such as MUSCL and Osher-Chakravarthy schemes are available. Turbulent flows can be modeled using any of the five turbulent models present in the code. A two-phase, two-liquid, Lagrangian spray model has been incorporated into the code. Chemical equilibrium and finite rate reaction models are available to model chemically reacting flows. The discrete ordinate method is used to model effects of thermal radiation. The code has been validated extensively against benchmark experimental data and has been applied to model flows in several propulsion system components of the SSME and the STME.

  11. Energy Conservation Code Decoded

    SciTech Connect

    Cole, Pam C.; Taylor, Zachary T.

    2006-09-01

    Designing an energy-efficient, affordable, and comfortable home is a lot easier thanks to a slime, easier to read booklet, the 2006 International Energy Conservation Code (IECC), published in March 2006. States, counties, and cities have begun reviewing the new code as a potential upgrade to their existing codes. Maintained under the public consensus process of the International Code Council, the IECC is designed to do just what its title says: promote the design and construction of energy-efficient homes and commercial buildings. Homes in this case means traditional single-family homes, duplexes, condominiums, and apartment buildings having three or fewer stories. The U.S. Department of Energy, which played a key role in proposing the changes that resulted in the new code, is offering a free training course that covers the residential provisions of the 2006 IECC.

  12. Astrophysics Source Code Library

    NASA Astrophysics Data System (ADS)

    Allen, A.; DuPrie, K.; Berriman, B.; Hanisch, R. J.; Mink, J.; Teuben, P. J.

    2013-10-01

    The Astrophysics Source Code Library (ASCL), founded in 1999, is a free on-line registry for source codes of interest to astronomers and astrophysicists. The library is housed on the discussion forum for Astronomy Picture of the Day (APOD) and can be accessed at http://ascl.net. The ASCL has a comprehensive listing that covers a significant number of the astrophysics source codes used to generate results published in or submitted to refereed journals and continues to grow. The ASCL currently has entries for over 500 codes; its records are citable and are indexed by ADS. The editors of the ASCL and members of its Advisory Committee were on hand at a demonstration table in the ADASS poster room to present the ASCL, accept code submissions, show how the ASCL is starting to be used by the astrophysics community, and take questions on and suggestions for improving the resource.

  13. Computer Code for Nanostructure Simulation

    NASA Technical Reports Server (NTRS)

    Filikhin, Igor; Vlahovic, Branislav

    2009-01-01

    Due to their small size, nanostructures can have stress and thermal gradients that are larger than any macroscopic analogue. These gradients can lead to specific regions that are susceptible to failure via processes such as plastic deformation by dislocation emission, chemical debonding, and interfacial alloying. A program has been developed that rigorously simulates and predicts optoelectronic properties of nanostructures of virtually any geometrical complexity and material composition. It can be used in simulations of energy level structure, wave functions, density of states of spatially configured phonon-coupled electrons, excitons in quantum dots, quantum rings, quantum ring complexes, and more. The code can be used to calculate stress distributions and thermal transport properties for a variety of nanostructures and interfaces, transport and scattering at nanoscale interfaces and surfaces under various stress states, and alloy compositional gradients. The code allows users to perform modeling of charge transport processes through quantum-dot (QD) arrays as functions of inter-dot distance, array order versus disorder, QD orientation, shape, size, and chemical composition for applications in photovoltaics and physical properties of QD-based biochemical sensors. The code can be used to study the hot exciton formation/relation dynamics in arrays of QDs of different shapes and sizes at different temperatures. It also can be used to understand the relation among the deposition parameters and inherent stresses, strain deformation, heat flow, and failure of nanostructures.

  14. Quantum convolutional codes derived from constacyclic codes

    NASA Astrophysics Data System (ADS)

    Yan, Tingsu; Huang, Xinmei; Tang, Yuansheng

    2014-12-01

    In this paper, three families of quantum convolutional codes are constructed. The first one and the second one can be regarded as a generalization of Theorems 3, 4, 7 and 8 [J. Chen, J. Li, F. Yang and Y. Huang, Int. J. Theor. Phys., doi:10.1007/s10773-014-2214-6 (2014)], in the sense that we drop the constraint q ≡ 1 (mod 4). Furthermore, the second one and the third one attain the quantum generalized Singleton bound.

  15. Huffman coding in advanced audio coding standard

    NASA Astrophysics Data System (ADS)

    Brzuchalski, Grzegorz

    2012-05-01

    This article presents several hardware architectures of Advanced Audio Coding (AAC) Huffman noiseless encoder, its optimisations and working implementation. Much attention has been paid to optimise the demand of hardware resources especially memory size. The aim of design was to get as short binary stream as possible in this standard. The Huffman encoder with whole audio-video system has been implemented in FPGA devices.

  16. Local stability and evolution of the genetic code.

    PubMed

    Chechetkin, V R; Lobzin, V V

    2009-12-21

    The standard genetic code is known to be robust to translation errors and point mutations. We studied how small modifications of the standard code affect its robustness. The robustness was assessed in terms of a proper stability function, the negative variations of which correspond to a more robust code. The fraction of more robust codes obtained under small modifications appeared to be unexpectedly high, about 0.1-0.4 depending on the choice of stability function and code modifications, yet significantly lower than the corresponding fraction in the random codes (about a half). In this sense the standard code ought to be considered distinctly non-random in accordance with previous observations. The distribution of the negative variations of stability function revealed very abrupt drop beyond one standard deviation, much sharper than for Gaussian distribution or for the random codes with the same number of codons in the sets coding for amino acids or stop-codons. This behavior holds for both the standard code as a whole and its binary NRN-NYN, NWN-NSN, and NMN-NKN blocks. Previously, it has been proved that such binary block structure is necessary for the robustness of a code and is inherent to the standard genetic code. The modifications of the standard code corresponding to more robust coding may be related to the different variants of the code. These effects may also contribute to the rates of replacements of amino acids. The observed features demonstrate the joint impact of random factors and natural selection during evolution of the genetic code. PMID:19735667

  17. Report number codes

    SciTech Connect

    Nelson, R.N.

    1985-05-01

    This publication lists all report number codes processed by the Office of Scientific and Technical Information. The report codes are substantially based on the American National Standards Institute, Standard Technical Report Number (STRN)-Format and Creation Z39.23-1983. The Standard Technical Report Number (STRN) provides one of the primary methods of identifying a specific technical report. The STRN consists of two parts: The report code and the sequential number. The report code identifies the issuing organization, a specific program, or a type of document. The sequential number, which is assigned in sequence by each report issuing entity, is not included in this publication. Part I of this compilation is alphabetized by report codes followed by issuing installations. Part II lists the issuing organization followed by the assigned report code(s). In both Parts I and II, the names of issuing organizations appear for the most part in the form used at the time the reports were issued. However, for some of the more prolific installations which have had name changes, all entries have been merged under the current name.

  18. Population codes in the visual cortex

    PubMed Central

    Tanabe, Seiji

    2013-01-01

    Every sensory event elicits activity in a broad population of cells that is distributed within and across cortical areas. How these neurons function together to represent the sensory environment is a major question in systems neuroscience. A number of proposals have been made, and recent advances in multi-neuronal recording have begun to allow researchers to test the predictions of these population-coding theories. In this review, I provide an introduction to some of the key concepts in population coding and describe several studies in the recent literature. The focus of this review is on sensory representation in the visual cortex and related perceptual decisions. The frameworks used to study population coding include population vectors, linear decoders, and Bayesian inference. Simple examples are provided to illustrate these concepts. Testing theories of population coding is an emerging subject in systems neuroscience, but advances in multi-neuronal recording and analysis suggest that an understanding is within reach. PMID:23542219

  19. Computer code to assess accidental pollutant releases

    SciTech Connect

    Pendergast, M.M.; Huang, J.C.

    1980-07-01

    A computer code was developed to calculate the cumulative frequency distributions of relative concentrations of an air pollutant following an accidental release from a stack or from a building penetration such as a vent. The calculations of relative concentration are based on the Gaussian plume equations. The meteorological data used for the calculation are in the form of joint frequency distributions of wind and atmospheric stability.

  20. GeoPhysical Analysis Code

    2012-12-21

    GPAC is a code that integrates open source libraries for element formulations, linear algebra, and I/O with two main LLNL-written components: (i) a set of standard finite, discrete, and discontinuous displacement element physics solvers for resolving Darcy fluid flow, explicit mechanics, implicit mechanics, fault rupture and earthquake nucleation, and fluid-mediated fracturing, including resolution of physcial behaviors both implicity and explicity, and (ii) a MPI-based parallelization implementation for use on generic HPC distributed memory architectures. Themore » resultant code can be used alone for linearly elastic problems; ploblems involving hydraulic fracturing, where the mesh topology is dynamically changed; fault rupture modeling and seismic risk assessment; and general granular materials behavior. The key application domain is for low-rate stimulation and fracture control in subsurface reservoirs (e.g., enhanced geothermal sites and unconventional shale gas stimulation). GPAC also has interfaces to call external libraries for , e.g., material models and equations of state; however, LLNL-developed EOS and material models will not be part of the current release. CPAC's secondary applications include modeling fault evolution for predicting the statistical distribution of earthquake events and to capture granular materials behavior under different load paths.« less

  1. GeoPhysical Analysis Code

    SciTech Connect

    2012-12-21

    GPAC is a code that integrates open source libraries for element formulations, linear algebra, and I/O with two main LLNL-written components: (i) a set of standard finite, discrete, and discontinuous displacement element physics solvers for resolving Darcy fluid flow, explicit mechanics, implicit mechanics, fault rupture and earthquake nucleation, and fluid-mediated fracturing, including resolution of physcial behaviors both implicity and explicity, and (ii) a MPI-based parallelization implementation for use on generic HPC distributed memory architectures. The resultant code can be used alone for linearly elastic problems; ploblems involving hydraulic fracturing, where the mesh topology is dynamically changed; fault rupture modeling and seismic risk assessment; and general granular materials behavior. The key application domain is for low-rate stimulation and fracture control in subsurface reservoirs (e.g., enhanced geothermal sites and unconventional shale gas stimulation). GPAC also has interfaces to call external libraries for , e.g., material models and equations of state; however, LLNL-developed EOS and material models will not be part of the current release. CPAC's secondary applications include modeling fault evolution for predicting the statistical distribution of earthquake events and to capture granular materials behavior under different load paths.

  2. TRANSF code user manual

    SciTech Connect

    Weaver, H.J.

    1981-11-01

    The TRANSF code is a semi-interactive FORTRAN IV program which is designed to calculate the model parameters of a (structural) system by performing a least square parameter fit to measured transfer function data. The code is available at LLNL on both the 7600 and the Cray machines. The transfer function data to be fit is read into the code via a disk file. The primary mode of output is FR80 graphics, although, it is also possible to have results written to either the TTY or to a disk file.

  3. 2-DUST: Dust radiative transfer code

    NASA Astrophysics Data System (ADS)

    Ueta, Toshiya; Meixner, Margaret

    2016-04-01

    2-DUST is a general-purpose dust radiative transfer code for an axisymmetric system that reveals the global energetics of dust grains in the shell and the 2-D projected morphologies of the shell that are strongly dependent on the mixed effects of the axisymmetric dust distribution and inclination angle. It can be used to model a variety of axisymmetric astronomical dust systems.

  4. FED. Zoning for TRUMP Heat Transfer Code

    SciTech Connect

    Elrod, D.

    1987-10-23

    FED reduces the effort required to obtain the necessary geometric input for problems which are to be solved using the heat-transfer code, TRUMP. TRUMP calculates transient and steady-state temperature distributions in multidimensional systems. FED can properly zone any body of revolution in one, two, or three dimensions.

  5. FORTRAN code-evaluation system

    NASA Technical Reports Server (NTRS)

    Capps, J. D.; Kleir, R.

    1977-01-01

    Automated code evaluation system can be used to detect coding errors and unsound coding practices in any ANSI FORTRAN IV source code before they can cause execution-time malfunctions. System concentrates on acceptable FORTRAN code features which are likely to produce undesirable results.

  6. FAST2 Code validation

    SciTech Connect

    Wilson, R.E.; Freeman, L.N.; Walker, S.N.

    1995-09-01

    The FAST2 Code which is capable of determining structural loads of a flexible, teetering, horizontal axis wind turbine is described and comparisons of calculated loads with test data at two wind speeds for the ESI-80 are given. The FAST2 Code models a two-bladed HAWT with degrees of freedom for blade flap, teeter, drive train flexibility, yaw, and windwise and crosswind tower motion. The code allows blade dimensions, stiffness, and weights to differ and models tower shadow, wind shear, and turbulence. Additionally, dynamic stall is included as are delta-3 and an underslung rotor. Load comparisons are made with ESI-80 test data in the form of power spectral density, rainflow counting, occurrence histograms and azimuth averaged bin plots. It is concluded that agreement between the FAST2 Code and test results is good.

  7. Compressible Astrophysics Simulation Code

    2007-07-18

    This is an astrophysics simulation code involving a radiation diffusion module developed at LLNL coupled to compressible hydrodynamics and adaptive mesh infrastructure developed at LBNL. One intended application is to neutrino diffusion in core collapse supernovae.

  8. Seals Flow Code Development

    NASA Technical Reports Server (NTRS)

    1991-01-01

    In recognition of a deficiency in the current modeling capability for seals, an effort was established by NASA to develop verified computational fluid dynamic concepts, codes, and analyses for seals. The objectives were to develop advanced concepts for the design and analysis of seals, to effectively disseminate the information to potential users by way of annual workshops, and to provide experimental verification for the models and codes under a wide range of operating conditions.

  9. Robust Nonlinear Neural Codes

    NASA Astrophysics Data System (ADS)

    Yang, Qianli; Pitkow, Xaq

    2015-03-01

    Most interesting natural sensory stimuli are encoded in the brain in a form that can only be decoded nonlinearly. But despite being a core function of the brain, nonlinear population codes are rarely studied and poorly understood. Interestingly, the few existing models of nonlinear codes are inconsistent with known architectural features of the brain. In particular, these codes have information content that scales with the size of the cortical population, even if that violates the data processing inequality by exceeding the amount of information entering the sensory system. Here we provide a valid theory of nonlinear population codes by generalizing recent work on information-limiting correlations in linear population codes. Although these generalized, nonlinear information-limiting correlations bound the performance of any decoder, they also make decoding more robust to suboptimal computation, allowing many suboptimal decoders to achieve nearly the same efficiency as an optimal decoder. Although these correlations are extremely difficult to measure directly, particularly for nonlinear codes, we provide a simple, practical test by which one can use choice-related activity in small populations of neurons to determine whether decoding is suboptimal or optimal and limited by correlated noise. We conclude by describing an example computation in the vestibular system where this theory applies. QY and XP was supported by a grant from the McNair foundation.

  10. Bit allocation for joint coding of multiple video programs

    NASA Astrophysics Data System (ADS)

    Wang, Limin; Vincent, Andre

    1997-01-01

    By dynamically distributing the channel capacity among video programs according to their respective scene complexities, joint coding has been a shown to be more efficient than independent coding for compression of multiple video programs. This paper examines the bit allocation issue for joint coding of multiple video programs and provides a bit allocation strategy that results in uniform picture quality among programs as will as within a program.

  11. The EGS5 Code System

    SciTech Connect

    Hirayama, Hideo; Namito, Yoshihito; Bielajew, Alex F.; Wilderman, Scott J.; U., Michigan; Nelson, Walter R.; /SLAC

    2005-12-20

    In the nineteen years since EGS4 was released, it has been used in a wide variety of applications, particularly in medical physics, radiation measurement studies, and industrial development. Every new user and every new application bring new challenges for Monte Carlo code designers, and code refinements and bug fixes eventually result in a code that becomes difficult to maintain. Several of the code modifications represented significant advances in electron and photon transport physics, and required a more substantial invocation than code patching. Moreover, the arcane MORTRAN3[48] computer language of EGS4, was highest on the complaint list of the users of EGS4. The size of the EGS4 user base is difficult to measure, as there never existed a formal user registration process. However, some idea of the numbers may be gleaned from the number of EGS4 manuals that were produced and distributed at SLAC: almost three thousand. Consequently, the EGS5 project was undertaken. It was decided to employ the FORTRAN 77 compiler, yet include as much as possible, the structural beauty and power of MORTRAN3. This report consists of four chapters and several appendices. Chapter 1 is an introduction to EGS5 and to this report in general. We suggest that you read it. Chapter 2 is a major update of similar chapters in the old EGS4 report[126] (SLAC-265) and the old EGS3 report[61] (SLAC-210), in which all the details of the old physics (i.e., models which were carried over from EGS4) and the new physics are gathered together. The descriptions of the new physics are extensive, and not for the faint of heart. Detailed knowledge of the contents of Chapter 2 is not essential in order to use EGS, but sophisticated users should be aware of its contents. In particular, details of the restrictions on the range of applicability of EGS are dispersed throughout the chapter. First-time users of EGS should skip Chapter 2 and come back to it later if necessary. With the release of the EGS4 version

  12. Environmentally-Safe Conditions for a Palladium-Catalyzed Direct C3-Arylation with High Turn Over Frequency of Imidazo[1,2-b]pyridazines Using Aryl Bromides and Chlorides.

    PubMed

    Chikhi, Sabah; Djebbar, Safia; Soulé, Jean-François; Doucet, Henri

    2016-09-01

    Pd(OAc)2 was found to catalyze very efficiently the direct arylation of imidazo[1,2-b]pyridazine at C3-position under a very low catalyst loading and phosphine-free conditions. The reaction can be performed in very high TOFs and TONs employing as little as 0.1-0.05 mol % catalyst using a wide range of aryl bromides. In addition, some electron-deficient aryl chlorides were also found to be suitable substrates. Moreover, 31 examples of the cross couplings were reported using green, safe, and renewable solvents, such as pentan-1-ol, diethylcarbonate or cyclopentyl methyl ether, without loss of efficiency. PMID:27380613

  13. Pyrrolo[1,2-b][1,2,5]benzothiadiazepines (PBTDs): A new class of agents with high apoptotic activity in chronic myelogenous leukemia K562 cells and in cells from patients at onset and who were imatinib-resistant.

    PubMed

    Silvestri, Romano; Marfè, Gabriella; Artico, Marino; La Regina, Giuseppe; Lavecchia, Antonio; Novellino, Ettore; Morgante, Emanuela; Morgante, Manuela; Di Stefano, Carla; Catalano, Gianfranco; Filomeni, Giuseppe; Abruzzese, Elisabetta; Ciriolo, Maria Rosa; Russo, Matteo Antonio; Amadori, Sergio; Cirilli, Roberto; La Torre, Francesco; Sinibaldi Salimei, Paola

    2006-09-21

    Pyrrolo[1,2-b][1,2,5]benzothiadiazepine 5,5-dioxides (PBTDs) induced apoptosis in human BCR-ABL-expressing leukemia cells. The apoptotic activity was also observed in primary leukemic blasts, obtained from chronic myelogenous leukemia (CML) patients at onset or from patients in blast crisis and who were imatinib-resistant. Compounds 5 and 14 induced apoptosis before BCR-ABL protein expression and tyrosin phosphorylation were affected and activated different caspases in the apoptotic pathway. PBTDs are a new class of valid candidates for the treatment of CML. PMID:16970408

  14. 27 CFR 20.135 - State code numbers.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2012-04-01 2012-04-01 false State code numbers. 20.135... Articles § 20.135 State code numbers. In showing the permit number on labels as provided in § 20.134(b)(2)(ii), the permittee who distributes the article may substitute the appropriate number shown below...

  15. New Methods for Lossless Image Compression Using Arithmetic Coding.

    ERIC Educational Resources Information Center

    Howard, Paul G.; Vitter, Jeffrey Scott

    1992-01-01

    Identifies four components of a good predictive lossless image compression method: (1) pixel sequence, (2) image modeling and prediction, (3) error modeling, and (4) error coding. Highlights include Laplace distribution and a comparison of the multilevel progressive method for image coding with the prediction by partial precision matching method.…

  16. Coded source neutron imaging

    SciTech Connect

    Bingham, Philip R; Santos-Villalobos, Hector J

    2011-01-01

    Coded aperture techniques have been applied to neutron radiography to address limitations in neutron flux and resolution of neutron detectors in a system labeled coded source imaging (CSI). By coding the neutron source, a magnified imaging system is designed with small spot size aperture holes (10 and 100 m) for improved resolution beyond the detector limits and with many holes in the aperture (50% open) to account for flux losses due to the small pinhole size. An introduction to neutron radiography and coded aperture imaging is presented. A system design is developed for a CSI system with a development of equations for limitations on the system based on the coded image requirements and the neutron source characteristics of size and divergence. Simulation has been applied to the design using McStas to provide qualitative measures of performance with simulations of pinhole array objects followed by a quantitative measure through simulation of a tilted edge and calculation of the modulation transfer function (MTF) from the line spread function. MTF results for both 100um and 10um aperture hole diameters show resolutions matching the hole diameters.

  17. Error coding simulations

    NASA Technical Reports Server (NTRS)

    Noble, Viveca K.

    1993-01-01

    There are various elements such as radio frequency interference (RFI) which may induce errors in data being transmitted via a satellite communication link. When a transmission is affected by interference or other error-causing elements, the transmitted data becomes indecipherable. It becomes necessary to implement techniques to recover from these disturbances. The objective of this research is to develop software which simulates error control circuits and evaluate the performance of these modules in various bit error rate environments. The results of the evaluation provide the engineer with information which helps determine the optimal error control scheme. The Consultative Committee for Space Data Systems (CCSDS) recommends the use of Reed-Solomon (RS) and convolutional encoders and Viterbi and RS decoders for error correction. The use of forward error correction techniques greatly reduces the received signal to noise needed for a certain desired bit error rate. The use of concatenated coding, e.g. inner convolutional code and outer RS code, provides even greater coding gain. The 16-bit cyclic redundancy check (CRC) code is recommended by CCSDS for error detection.

  18. Error coding simulations

    NASA Astrophysics Data System (ADS)

    Noble, Viveca K.

    1993-11-01

    There are various elements such as radio frequency interference (RFI) which may induce errors in data being transmitted via a satellite communication link. When a transmission is affected by interference or other error-causing elements, the transmitted data becomes indecipherable. It becomes necessary to implement techniques to recover from these disturbances. The objective of this research is to develop software which simulates error control circuits and evaluate the performance of these modules in various bit error rate environments. The results of the evaluation provide the engineer with information which helps determine the optimal error control scheme. The Consultative Committee for Space Data Systems (CCSDS) recommends the use of Reed-Solomon (RS) and convolutional encoders and Viterbi and RS decoders for error correction. The use of forward error correction techniques greatly reduces the received signal to noise needed for a certain desired bit error rate. The use of concatenated coding, e.g. inner convolutional code and outer RS code, provides even greater coding gain. The 16-bit cyclic redundancy check (CRC) code is recommended by CCSDS for error detection.

  19. Parallel applications of the USNRC consolidated code

    NASA Astrophysics Data System (ADS)

    Gan, Jun; Downar, Thomas J.; Mahaffy, John H.; Uhle, Jennifer L.

    2001-07-01

    The United States Nuclear Regulatory Commission has developed the thermal-hydraulic analysis code TRAC-M to consolidate the capabilities of its suite of reactor safety analysis codes. One of the requirements for the new consolidated code is that it supports parallel computations to extend code functionality and to improve execution speed. A flexible request driven Exterior Communication Interface (ECI) was developed at Penn State University for use with the consolidated code and has enabled distributed parallel computing. This paper reports the application of TRAC-M and the ECI at Purdue University to a series of practical nuclear reactor problems. The performance of the consolidated code is studied on a shared memory machine, DEC Alpha 8400, in which a Large Break Loss of Coolant Accident (LBLOCA) analysis is applied for the safety analysis of the new generation reactor, AP600. The problem demonstrates the importance of balancing the computational for practical applications. Other computational platforms are also examined, to include the implementation of Linux and Windows OS on multiprocessor PCs. In general, the parallel performance on UNIX and Linux platforms is found to be the most stable and efficient.

  20. Ranking search for probabilistic fingerprinting codes

    NASA Astrophysics Data System (ADS)

    Schäfer, Marcel; Berchtold, Waldemar; Steinebach, Martin

    2012-03-01

    Digital transaction watermarking today is a widely accepted mechanism to discourage illegal distribution of multimedia. The transaction watermark is a user-specific message that is embedded in all copies of one content and thus makes it individual. Therewith it allows to trace back copyright infringements. One major threat on transaction watermarking are collusion attacks. Here, multiple individualized copies of the work are compared and/or combined to attack the integrity or availability of the embedded watermark message. One solution to counter such attacks are mathematical codes called collusion secure fingerprinting codes. Problems arise when applying such codes to multimedia files with small payload, e.g. short audio tracks or images. Therefore the code length has to be shortened which increases the error rates and/or the effort of the tracing algorithm. In this work we propose an approach whether to use as an addition to probabilistic fingerprinting codes for a reduction of the effort and increment of security, as well as a new separate method providing shorter codes at a very fast and high accurate tracing algorithm.

  1. CodingMotif: exact determination of overrepresented nucleotide motifs in coding sequences

    PubMed Central

    2012-01-01

    Background It has been increasingly appreciated that coding sequences harbor regulatory sequence motifs in addition to encoding for protein. These sequence motifs are expected to be overrepresented in nucleotide sequences bound by a common protein or small RNA. However, detecting overrepresented motifs has been difficult because of interference by constraints at the protein level. Sampling-based approaches to solve this problem based on codon-shuffling have been limited to exploring only an infinitesimal fraction of the sequence space and by their use of parametric approximations. Results We present a novel O(N(log N)2)-time algorithm, CodingMotif, to identify nucleotide-level motifs of unusual copy number in protein-coding regions. Using a new dynamic programming algorithm we are able to exhaustively calculate the distribution of the number of occurrences of a motif over all possible coding sequences that encode the same amino acid sequence, given a background model for codon usage and dinucleotide biases. Our method takes advantage of the sparseness of loci where a given motif can occur, greatly speeding up the required convolution calculations. Knowledge of the distribution allows one to assess the exact non-parametric p-value of whether a given motif is over- or under- represented. We demonstrate that our method identifies known functional motifs more accurately than sampling and parametric-based approaches in a variety of coding datasets of various size, including ChIP-seq data for the transcription factors NRSF and GABP. Conclusions CodingMotif provides a theoretically and empirically-demonstrated advance for the detection of motifs overrepresented in coding sequences. We expect CodingMotif to be useful for identifying motifs in functional genomic datasets such as DNA-protein binding, RNA-protein binding, or microRNA-RNA binding within coding regions. A software implementation is available at http://bioinformatics.bc.edu/chuanglab/codingmotif.tar PMID

  2. Phase-coded pulse aperiodic transmitter coding

    NASA Astrophysics Data System (ADS)

    Virtanen, I. I.; Vierinen, J.; Lehtinen, M. S.

    2009-07-01

    Both ionospheric and weather radar communities have already adopted the method of transmitting radar pulses in an aperiodic manner when measuring moderately overspread targets. Among the users of the ionospheric radars, this method is called Aperiodic Transmitter Coding (ATC), whereas the weather radar users have adopted the term Simultaneous Multiple Pulse-Repetition Frequency (SMPRF). When probing the ionosphere at the carrier frequencies of the EISCAT Incoherent Scatter Radar facilities, the range extent of the detectable target is typically of the order of one thousand kilometers - about seven milliseconds - whereas the characteristic correlation time of the scattered signal varies from a few milliseconds in the D-region to only tens of microseconds in the F-region. If one is interested in estimating the scattering autocorrelation function (ACF) at time lags shorter than the F-region correlation time, the D-region must be considered as a moderately overspread target, whereas the F-region is a severely overspread one. Given the technical restrictions of the radar hardware, a combination of ATC and phase-coded long pulses is advantageous for this kind of target. We evaluate such an experiment under infinitely low signal-to-noise ratio (SNR) conditions using lag profile inversion. In addition, a qualitative evaluation under high-SNR conditions is performed by analysing simulated data. The results show that an acceptable estimation accuracy and a very good lag resolution in the D-region can be achieved with a pulse length long enough for simultaneous E- and F-region measurements with a reasonable lag extent. The new experiment design is tested with the EISCAT Tromsø VHF (224 MHz) radar. An example of a full D/E/F-region ACF from the test run is shown at the end of the paper.

  3. Classical codes in quantum state space

    NASA Astrophysics Data System (ADS)

    Howard, Mark

    2015-12-01

    We present a construction of Hermitian operators and quantum states labelled by strings from a finite field. The distance between these operators or states is then simply related (typically, proportional) to the Hamming distance between their corresponding strings. This allows a straightforward application of classical coding theory to find arrangements of operators or states with a given distance distribution. Using the simplex or extended Reed-Solomon code in our construction recovers the discrete Wigner function, which has important applications in quantum information theory.

  4. Visual Coding in Locust Photoreceptors

    PubMed Central

    Faivre, Olivier; Juusola, Mikko

    2008-01-01

    Information capture by photoreceptors ultimately limits the quality of visual processing in the brain. Using conventional sharp microelectrodes, we studied how locust photoreceptors encode random (white-noise, WN) and naturalistic (1/f stimuli, NS) light patterns in vivo and how this coding changes with mean illumination and ambient temperature. We also examined the role of their plasma membrane in shaping voltage responses. We found that brightening or warming increase and accelerate voltage responses, but reduce noise, enabling photoreceptors to encode more information. For WN stimuli, this was accompanied by broadening of the linear frequency range. On the contrary, with NS the signaling took place within a constant bandwidth, possibly revealing a ‘preference’ for inputs with 1/f statistics. The faster signaling was caused by acceleration of the elementary phototransduction current - leading to bumps - and their distribution. The membrane linearly translated phototransduction currents into voltage responses without limiting the throughput of these messages. As the bumps reflected fast changes in membrane resistance, the data suggest that their shape is predominantly driven by fast changes in the light-gated conductance. On the other hand, the slower bump latency distribution is likely to represent slower enzymatic intracellular reactions. Furthermore, the Q10s of bump duration and latency distribution depended on light intensity. Altogether, this study suggests that biochemical constraints imposed upon signaling change continuously as locust photoreceptors adapt to environmental light and temperature conditions. PMID:18478123

  5. FAA Smoke Transport Code

    2006-10-27

    FAA Smoke Transport Code, a physics-based Computational Fluid Dynamics tool, which couples heat, mass, and momentum transfer, has been developed to provide information on smoke transport in cargo compartments with various geometries and flight conditions. The software package contains a graphical user interface for specification of geometry and boundary conditions, analysis module for solving the governing equations, and a post-processing tool. The current code was produced by making substantial improvements and additions to a codemore » obtained from a university. The original code was able to compute steady, uniform, isothermal turbulent pressurization. In addition, a preprocessor and postprocessor were added to arrive at the current software package.« less

  6. Seals Code Development Workshop

    NASA Technical Reports Server (NTRS)

    Hendricks, Robert C. (Compiler); Liang, Anita D. (Compiler)

    1996-01-01

    Seals Workshop of 1995 industrial code (INDSEAL) release include ICYL, GCYLT, IFACE, GFACE, SPIRALG, SPIRALI, DYSEAL, and KTK. The scientific code (SCISEAL) release includes conjugate heat transfer and multidomain with rotordynamic capability. Several seals and bearings codes (e.g., HYDROFLEX, HYDROTRAN, HYDROB3D, FLOWCON1, FLOWCON2) are presented and results compared. Current computational and experimental emphasis includes multiple connected cavity flows with goals of reducing parasitic losses and gas ingestion. Labyrinth seals continue to play a significant role in sealing with face, honeycomb, and new sealing concepts under investigation for advanced engine concepts in view of strict environmental constraints. The clean sheet approach to engine design is advocated with program directions and anticipated percentage SFC reductions cited. Future activities center on engine applications with coupled seal/power/secondary flow streams.

  7. Code query by example

    NASA Astrophysics Data System (ADS)

    Vaucouleur, Sebastien

    2011-02-01

    We introduce code query by example for customisation of evolvable software products in general and of enterprise resource planning systems (ERPs) in particular. The concept is based on an initial empirical study on practices around ERP systems. We motivate our design choices based on those empirical results, and we show how the proposed solution helps with respect to the infamous upgrade problem: the conflict between the need for customisation and the need for upgrade of ERP systems. We further show how code query by example can be used as a form of lightweight static analysis, to detect automatically potential defects in large software products. Code query by example as a form of lightweight static analysis is particularly interesting in the context of ERP systems: it is often the case that programmers working in this field are not computer science specialists but more of domain experts. Hence, they require a simple language to express custom rules.

  8. Code inspection instructional validation

    NASA Technical Reports Server (NTRS)

    Orr, Kay; Stancil, Shirley

    1992-01-01

    The Shuttle Data Systems Branch (SDSB) of the Flight Data Systems Division (FDSD) at Johnson Space Center contracted with Southwest Research Institute (SwRI) to validate the effectiveness of an interactive video course on the code inspection process. The purpose of this project was to determine if this course could be effective for teaching NASA analysts the process of code inspection. In addition, NASA was interested in the effectiveness of this unique type of instruction (Digital Video Interactive), for providing training on software processes. This study found the Carnegie Mellon course, 'A Cure for the Common Code', effective for teaching the process of code inspection. In addition, analysts prefer learning with this method of instruction, or this method in combination with other methods. As is, the course is definitely better than no course at all; however, findings indicate changes are needed. Following are conclusions of this study. (1) The course is instructionally effective. (2) The simulation has a positive effect on student's confidence in his ability to apply new knowledge. (3) Analysts like the course and prefer this method of training, or this method in combination with current methods of training in code inspection, over the way training is currently being conducted. (4) Analysts responded favorably to information presented through scenarios incorporating full motion video. (5) Some course content needs to be changed. (6) Some content needs to be added to the course. SwRI believes this study indicates interactive video instruction combined with simulation is effective for teaching software processes. Based on the conclusions of this study, SwRI has outlined seven options for NASA to consider. SwRI recommends the option which involves creation of new source code and data files, but uses much of the existing content and design from the current course. Although this option involves a significant software development effort, SwRI believes this option

  9. Aeroacoustic Prediction Codes

    NASA Technical Reports Server (NTRS)

    Gliebe, P; Mani, R.; Shin, H.; Mitchell, B.; Ashford, G.; Salamah, S.; Connell, S.; Huff, Dennis (Technical Monitor)

    2000-01-01

    This report describes work performed on Contract NAS3-27720AoI 13 as part of the NASA Advanced Subsonic Transport (AST) Noise Reduction Technology effort. Computer codes were developed to provide quantitative prediction, design, and analysis capability for several aircraft engine noise sources. The objective was to provide improved, physics-based tools for exploration of noise-reduction concepts and understanding of experimental results. Methods and codes focused on fan broadband and 'buzz saw' noise and on low-emissions combustor noise and compliment work done by other contractors under the NASA AST program to develop methods and codes for fan harmonic tone noise and jet noise. The methods and codes developed and reported herein employ a wide range of approaches, from the strictly empirical to the completely computational, with some being semiempirical analytical, and/or analytical/computational. Emphasis was on capturing the essential physics while still considering method or code utility as a practical design and analysis tool for everyday engineering use. Codes and prediction models were developed for: (1) an improved empirical correlation model for fan rotor exit flow mean and turbulence properties, for use in predicting broadband noise generated by rotor exit flow turbulence interaction with downstream stator vanes: (2) fan broadband noise models for rotor and stator/turbulence interaction sources including 3D effects, noncompact-source effects. directivity modeling, and extensions to the rotor supersonic tip-speed regime; (3) fan multiple-pure-tone in-duct sound pressure prediction methodology based on computational fluid dynamics (CFD) analysis; and (4) low-emissions combustor prediction methodology and computer code based on CFD and actuator disk theory. In addition. the relative importance of dipole and quadrupole source mechanisms was studied using direct CFD source computation for a simple cascadeigust interaction problem, and an empirical combustor

  10. Modular optimization code package: MOZAIK

    NASA Astrophysics Data System (ADS)

    Bekar, Kursat B.

    This dissertation addresses the development of a modular optimization code package, MOZAIK, for geometric shape optimization problems in nuclear engineering applications. MOZAIK's first mission, determining the optimal shape of the D2O moderator tank for the current and new beam tube configurations for the Penn State Breazeale Reactor's (PSBR) beam port facility, is used to demonstrate its capabilities and test its performance. MOZAIK was designed as a modular optimization sequence including three primary independent modules: the initializer, the physics and the optimizer, each having a specific task. By using fixed interface blocks among the modules, the code attains its two most important characteristics: generic form and modularity. The benefit of this modular structure is that the contents of the modules can be switched depending on the requirements of accuracy, computational efficiency, or compatibility with the other modules. Oak Ridge National Laboratory's discrete ordinates transport code TORT was selected as the transport solver in the physics module of MOZAIK, and two different optimizers, Min-max and Genetic Algorithms (GA), were implemented in the optimizer module of the code package. A distributed memory parallelism was also applied to MOZAIK via MPI (Message Passing Interface) to execute the physics module concurrently on a number of processors for various states in the same search. Moreover, dynamic scheduling was enabled to enhance load balance among the processors while running MOZAIK's physics module thus improving the parallel speedup and efficiency. In this way, the total computation time consumed by the physics module is reduced by a factor close to M, where M is the number of processors. This capability also encourages the use of MOZAIK for shape optimization problems in nuclear applications because many traditional codes related to radiation transport do not have parallel execution capability. A set of computational models based on the

  11. Ascorbic acid deficiency decreases hepatic cytochrome P-450, especially CYP2B1/2B2, and simultaneously induces heme oxygenase-1 gene expression in scurvy-prone ODS rats.

    PubMed

    Kobayashi, Misato; Hoshinaga, Yukiko; Miura, Natsuko; Tokuda, Yuki; Shigeoka, Shigeru; Murai, Atsushi; Horio, Fumihiko

    2014-01-01

    The mechanisms underlying the decrease in hepatic cytochrome P-450 (CYP) content in ascorbic acid deficiency was investigated in scurvy-prone ODS rats. First, male ODS rats were fed a diet containing sufficient ascorbic acid (control) or a diet without ascorbic acid (deficient) for 18 days, with or without the intraperitoneal injection of phenobarbital. Ascorbic acid deficiency decreased hepatic microsomal total CYP content, CYP2B1/2B2 protein, and mitochondrial cytochrome oxidase (COX) complex IV subunit I protein, and simultaneously increased heme oxygenase-1 protein in microsomes and mitochondria. Next, heme oxygenase-1 inducers, that is lipopolysaccharide and hemin, were administered to phenobaribital-treated ODS rats fed sufficient ascorbic acid. The administration of these inducers decreased hepatic microsomal total CYP content, CYP2B1/2B2 protein, and mitochondrial COX complex IV subunit I protein. These results suggested that the stimulation of hepatic heme oxygenase-1 expression by ascorbic acid deficiency caused the decrease in CYP content in liver. PMID:25036135

  12. Genetic characterization of interleukins (IL-1α, IL-1β, IL-2, IL-4, IL-8, IL-10, IL-12A, IL-12B, IL-15 and IL-18) with relevant biological roles in lagomorphs

    PubMed Central

    Neves, Fabiana; Abrantes, Joana; Almeida, Tereza; de Matos, Ana Lemos; Costa, Paulo P

    2015-01-01

    ILs, as essential innate immune modulators, are involved in an array of biological processes. In the European rabbit (Oryctolagus cuniculus) IL-1α, IL-1β, IL-2, IL-4, IL-8, IL-10, IL-12A, IL-12B, IL-15 and IL-18 have been implicated in inflammatory processes and in the immune response against rabbit hemorrhagic disease virus and myxoma virus infections. In this study we characterized these ILs in six Lagomorpha species (European rabbit, pygmy rabbit, two cottontail rabbit species, European brown hare and American pika). Overall, these ILs are conserved between lagomorphs, including in their exon/intron structure. Most differences were observed between leporids and American pika. Indeed, when comparing both, some relevant differences were observed in American pika, such as the location of the stop codon in IL-1α and IL-2, the existence of a different transcript in IL8 and the number of cysteine residues in IL-1β. Changes at N-glycosylation motifs were also detected in IL-1, IL-10, IL-12B and IL-15. IL-1α is the protein that presents the highest evolutionary distances, which is in contrast to IL-12A where the distances between lagomorphs are the lowest. For all these ILs, sequences of human and European rabbit are more closely related than between human and mouse or European rabbit and mouse. PMID:26395994

  13. Genetic characterization of interleukins (IL-1α, IL-1β, IL-2, IL-4, IL-8, IL-10, IL-12A, IL-12B, IL-15 and IL-18) with relevant biological roles in lagomorphs.

    PubMed

    Neves, Fabiana; Abrantes, Joana; Almeida, Tereza; de Matos, Ana Lemos; Costa, Paulo P; Esteves, Pedro J

    2015-11-01

    ILs, as essential innate immune modulators, are involved in an array of biological processes. In the European rabbit (Oryctolagus cuniculus) IL-1α, IL-1β, IL-2, IL-4, IL-8, IL-10, IL-12A, IL-12B, IL-15 and IL-18 have been implicated in inflammatory processes and in the immune response against rabbit hemorrhagic disease virus and myxoma virus infections. In this study we characterized these ILs in six Lagomorpha species (European rabbit, pygmy rabbit, two cottontail rabbit species, European brown hare and American pika). Overall, these ILs are conserved between lagomorphs, including in their exon/intron structure. Most differences were observed between leporids and American pika. Indeed, when comparing both, some relevant differences were observed in American pika, such as the location of the stop codon in IL-1α and IL-2, the existence of a different transcript in IL8 and the number of cysteine residues in IL-1β. Changes at N-glycosylation motifs were also detected in IL-1, IL-10, IL-12B and IL-15. IL-1α is the protein that presents the highest evolutionary distances, which is in contrast to IL-12A where the distances between lagomorphs are the lowest. For all these ILs, sequences of human and European rabbit are more closely related than between human and mouse or European rabbit and mouse. PMID:26395994

  14. Accumulate Repeat Accumulate Coded Modulation

    NASA Technical Reports Server (NTRS)

    Abbasfar, Aliazam; Divsalar, Dariush; Yao, Kung

    2004-01-01

    In this paper we propose an innovative coded modulation scheme called 'Accumulate Repeat Accumulate Coded Modulation' (ARA coded modulation). This class of codes can be viewed as serial turbo-like codes, or as a subclass of Low Density Parity Check (LDPC) codes that are combined with high level modulation. Thus at the decoder belief propagation can be used for iterative decoding of ARA coded modulation on a graph, provided a demapper transforms the received in-phase and quadrature samples to reliability of the bits.

  15. On fuzzy semantic similarity measure for DNA coding.

    PubMed

    Ahmad, Muneer; Jung, Low Tang; Bhuiyan, Md Al-Amin

    2016-02-01

    A coding measure scheme numerically translates the DNA sequence to a time domain signal for protein coding regions identification. A number of coding measure schemes based on numerology, geometry, fixed mapping, statistical characteristics and chemical attributes of nucleotides have been proposed in recent decades. Such coding measure schemes lack the biologically meaningful aspects of nucleotide data and hence do not significantly discriminate coding regions from non-coding regions. This paper presents a novel fuzzy semantic similarity measure (FSSM) coding scheme centering on FSSM codons׳ clustering and genetic code context of nucleotides. Certain natural characteristics of nucleotides i.e. appearance as a unique combination of triplets, preserving special structure and occurrence, and ability to own and share density distributions in codons have been exploited in FSSM. The nucleotides׳ fuzzy behaviors, semantic similarities and defuzzification based on the center of gravity of nucleotides revealed a strong correlation between nucleotides in codons. The proposed FSSM coding scheme attains a significant enhancement in coding regions identification i.e. 36-133% as compared to other existing coding measure schemes tested over more than 250 benchmarked and randomly taken DNA datasets of different organisms. PMID:26773936

  16. Coded-aperture imaging in nuclear medicine

    NASA Astrophysics Data System (ADS)

    Smith, Warren E.; Barrett, Harrison H.; Aarsvold, John N.

    1989-11-01

    Coded-aperture imaging is a technique for imaging sources that emit high-energy radiation. This type of imaging involves shadow casting and not reflection or refraction. High-energy sources exist in x ray and gamma-ray astronomy, nuclear reactor fuel-rod imaging, and nuclear medicine. Of these three areas nuclear medicine is perhaps the most challenging because of the limited amount of radiation available and because a three-dimensional source distribution is to be determined. In nuclear medicine a radioactive pharmaceutical is administered to a patient. The pharmaceutical is designed to be taken up by a particular organ of interest, and its distribution provides clinical information about the function of the organ, or the presence of lesions within the organ. This distribution is determined from spatial measurements of the radiation emitted by the radiopharmaceutical. The principles of imaging radiopharmaceutical distributions with coded apertures are reviewed. Included is a discussion of linear shift-variant projection operators and the associated inverse problem. A system developed at the University of Arizona in Tucson consisting of small modular gamma-ray cameras fitted with coded apertures is described.

  17. Coded-aperture imaging in nuclear medicine

    NASA Technical Reports Server (NTRS)

    Smith, Warren E.; Barrett, Harrison H.; Aarsvold, John N.

    1989-01-01

    Coded-aperture imaging is a technique for imaging sources that emit high-energy radiation. This type of imaging involves shadow casting and not reflection or refraction. High-energy sources exist in x ray and gamma-ray astronomy, nuclear reactor fuel-rod imaging, and nuclear medicine. Of these three areas nuclear medicine is perhaps the most challenging because of the limited amount of radiation available and because a three-dimensional source distribution is to be determined. In nuclear medicine a radioactive pharmaceutical is administered to a patient. The pharmaceutical is designed to be taken up by a particular organ of interest, and its distribution provides clinical information about the function of the organ, or the presence of lesions within the organ. This distribution is determined from spatial measurements of the radiation emitted by the radiopharmaceutical. The principles of imaging radiopharmaceutical distributions with coded apertures are reviewed. Included is a discussion of linear shift-variant projection operators and the associated inverse problem. A system developed at the University of Arizona in Tucson consisting of small modular gamma-ray cameras fitted with coded apertures is described.

  18. Multiple trellis coded modulation

    NASA Technical Reports Server (NTRS)

    Simon, Marvin K. (Inventor); Divsalar, Dariush (Inventor)

    1990-01-01

    A technique for designing trellis codes to minimize bit error performance for a fading channel. The invention provides a criteria which may be used in the design of such codes which is significantly different from that used for average white Gaussian noise channels. The method of multiple trellis coded modulation of the present invention comprises the steps of: (a) coding b bits of input data into s intermediate outputs; (b) grouping said s intermediate outputs into k groups of s.sub.i intermediate outputs each where the summation of all s.sub.i,s is equal to s and k is equal to at least 2; (c) mapping each of said k groups of intermediate outputs into one of a plurality of symbols in accordance with a plurality of modulation schemes, one for each group such that the first group is mapped in accordance with a first modulation scheme and the second group is mapped in accordance with a second modulation scheme; and (d) outputting each of said symbols to provide k output symbols for each b bits of input data.

  19. Code of Ethics.

    ERIC Educational Resources Information Center

    American Sociological Association, Washington, DC.

    The American Sociological Association's code of ethics for sociologists is presented. For sociological research and practice, 10 requirements for ethical behavior are identified, including: maintaining objectivity and integrity; fully reporting findings and research methods, without omission of significant data; reporting fully all sources of…

  20. Sharing the Code.

    ERIC Educational Resources Information Center

    Olsen, Florence

    2003-01-01

    Colleges and universities are beginning to consider collaborating on open-source-code projects as a way to meet critical software and computing needs. Points out the attractive features of noncommercial open-source software and describes some examples in use now, especially for the creation of Web infrastructure. (SLD)

  1. The Redox Code

    PubMed Central

    Jones, Dean P.

    2015-01-01

    Abstract Significance: The redox code is a set of principles that defines the positioning of the nicotinamide adenine dinucleotide (NAD, NADP) and thiol/disulfide and other redox systems as well as the thiol redox proteome in space and time in biological systems. The code is richly elaborated in an oxygen-dependent life, where activation/deactivation cycles involving O2 and H2O2 contribute to spatiotemporal organization for differentiation, development, and adaptation to the environment. Disruption of this organizational structure during oxidative stress represents a fundamental mechanism in system failure and disease. Recent Advances: Methodology in assessing components of the redox code under physiological conditions has progressed, permitting insight into spatiotemporal organization and allowing for identification of redox partners in redox proteomics and redox metabolomics. Critical Issues: Complexity of redox networks and redox regulation is being revealed step by step, yet much still needs to be learned. Future Directions: Detailed knowledge of the molecular patterns generated from the principles of the redox code under defined physiological or pathological conditions in cells and organs will contribute to understanding the redox component in health and disease. Ultimately, there will be a scientific basis to a modern redox medicine. Antioxid. Redox Signal. 23, 734–746. PMID:25891126

  2. Environmental Fluid Dynamics Code

    EPA Science Inventory

    The Environmental Fluid Dynamics Code (EFDC)is a state-of-the-art hydrodynamic model that can be used to simulate aquatic systems in one, two, and three dimensions. It has evolved over the past two decades to become one of the most widely used and technically defensible hydrodyn...

  3. Code of Ethics.

    ERIC Educational Resources Information Center

    Association of College Unions-International, Bloomington, IN.

    The code of ethics for the college union and student activities professional is presented by the Association of College Unions-International. The preamble identifies the objectives of the college union as providing campus community centers and social programs that enhance the quality of life for members of the academic community. Ethics for…

  4. Dual Coding in Children.

    ERIC Educational Resources Information Center

    Burton, John K.; Wildman, Terry M.

    The purpose of this study was to test the applicability of the dual coding hypothesis to children's recall performance. The hypothesis predicts that visual interference will have a small effect on the recall of visually presented words or pictures, but that acoustic interference will cause a decline in recall of visually presented words and…

  5. The revised genetic code

    NASA Astrophysics Data System (ADS)

    Ninio, Jacques

    1990-03-01

    Recent findings on the genetic code are reviewed, including selenocysteine usage, deviations in the assignments of sense and nonsense codons, RNA editing, natural ribosomal frameshifts and non-orthodox codon-anticodon pairings. A multi-stage codon reading process is presented.

  6. Dress Codes and Uniforms.

    ERIC Educational Resources Information Center

    Lumsden, Linda; Miller, Gabriel

    2002-01-01

    Students do not always make choices that adults agree with in their choice of school dress. Dress-code issues are explored in this Research Roundup, and guidance is offered to principals seeking to maintain a positive school climate. In "Do School Uniforms Fit?" Kerry White discusses arguments for and against school uniforms and summarizes the…

  7. Code Optimization Techniques

    SciTech Connect

    MAGEE,GLEN I.

    2000-08-03

    Computers transfer data in a number of different ways. Whether through a serial port, a parallel port, over a modem, over an ethernet cable, or internally from a hard disk to memory, some data will be lost. To compensate for that loss, numerous error detection and correction algorithms have been developed. One of the most common error correction codes is the Reed-Solomon code, which is a special subset of BCH (Bose-Chaudhuri-Hocquenghem) linear cyclic block codes. In the AURA project, an unmanned aircraft sends the data it collects back to earth so it can be analyzed during flight and possible flight modifications made. To counter possible data corruption during transmission, the data is encoded using a multi-block Reed-Solomon implementation with a possibly shortened final block. In order to maximize the amount of data transmitted, it was necessary to reduce the computation time of a Reed-Solomon encoding to three percent of the processor's time. To achieve such a reduction, many code optimization techniques were employed. This paper outlines the steps taken to reduce the processing time of a Reed-Solomon encoding and the insight into modern optimization techniques gained from the experience.

  8. Arithmetic coding as a non-linear dynamical system

    NASA Astrophysics Data System (ADS)

    Nagaraj, Nithin; Vaidya, Prabhakar G.; Bhat, Kishor G.

    2009-04-01

    In order to perform source coding (data compression), we treat messages emitted by independent and identically distributed sources as imprecise measurements (symbolic sequence) of a chaotic, ergodic, Lebesgue measure preserving, non-linear dynamical system known as Generalized Luröth Series (GLS). GLS achieves Shannon's entropy bound and turns out to be a generalization of arithmetic coding, a popular source coding algorithm, used in international compression standards such as JPEG2000 and H.264. We further generalize GLS to piecewise non-linear maps (Skewed-nGLS). We motivate the use of Skewed-nGLS as a framework for joint source coding and encryption.

  9. National Combustion Code: Parallel Implementation and Performance

    NASA Technical Reports Server (NTRS)

    Quealy, A.; Ryder, R.; Norris, A.; Liu, N.-S.

    2000-01-01

    The National Combustion Code (NCC) is being developed by an industry-government team for the design and analysis of combustion systems. CORSAIR-CCD is the current baseline reacting flow solver for NCC. This is a parallel, unstructured grid code which uses a distributed memory, message passing model for its parallel implementation. The focus of the present effort has been to improve the performance of the NCC flow solver to meet combustor designer requirements for model accuracy and analysis turnaround time. Improving the performance of this code contributes significantly to the overall reduction in time and cost of the combustor design cycle. This paper describes the parallel implementation of the NCC flow solver and summarizes its current parallel performance on an SGI Origin 2000. Earlier parallel performance results on an IBM SP-2 are also included. The performance improvements which have enabled a turnaround of less than 15 hours for a 1.3 million element fully reacting combustion simulation are described.

  10. Writing and Reading the Tubulin Code.

    PubMed

    Yu, Ian; Garnham, Christopher P; Roll-Mecak, Antonina

    2015-07-10

    Microtubules give rise to intracellular structures with diverse morphologies and dynamics that are crucial for cell division, motility, and differentiation. They are decorated with abundant and chemically diverse posttranslational modifications that modulate their stability and interactions with cellular regulators. These modifications are important for the biogenesis and maintenance of complex microtubule arrays such as those found in spindles, cilia, neuronal processes, and platelets. Here we discuss the nature and subcellular distribution of these posttranslational marks whose patterns have been proposed to constitute a tubulin code that is interpreted by cellular effectors. We review the enzymes responsible for writing the tubulin code, explore their functional consequences, and identify outstanding challenges in deciphering the tubulin code. PMID:25957412

  11. Error-correcting codes on scale-free networks

    NASA Astrophysics Data System (ADS)

    Kim, Jung-Hoon; Ko, Young-Jo

    2004-06-01

    We investigate the potential of scale-free networks as error-correcting codes. We find that irregular low-density parity-check codes with the highest performance known to date have degree distributions well fitted by a power-law function p (k) ˜ k-γ with γ close to 2, which suggests that codes built on scale-free networks with appropriate power exponents can be good error-correcting codes, with a performance possibly approaching the Shannon limit. We demonstrate for an erasure channel that codes with a power-law degree distribution of the form p (k) = C (k+α)-γ , with k⩾2 and suitable selection of the parameters α and γ , indeed have very good error-correction capabilities.

  12. Surface code quantum computing by lattice surgery

    NASA Astrophysics Data System (ADS)

    Horsman, Clare; Fowler, Austin G.; Devitt, Simon; Van Meter, Rodney

    2012-12-01

    In recent years, surface codes have become a leading method for quantum error correction in theoretical large-scale computational and communications architecture designs. Their comparatively high fault-tolerant thresholds and their natural two-dimensional nearest-neighbour (2DNN) structure make them an obvious choice for large scale designs in experimentally realistic systems. While fundamentally based on the toric code of Kitaev, there are many variants, two of which are the planar- and defect-based codes. Planar codes require fewer qubits to implement (for the same strength of error correction), but are restricted to encoding a single qubit of information. Interactions between encoded qubits are achieved via transversal operations, thus destroying the inherent 2DNN nature of the code. In this paper we introduce a new technique enabling the coupling of two planar codes without transversal operations, maintaining the 2DNN of the encoded computer. Our lattice surgery technique comprises splitting and merging planar code surfaces, and enables us to perform universal quantum computation (including magic state injection) while removing the need for braided logic in a strictly 2DNN design, and hence reduces the overall qubit resources for logic operations. Those resources are further reduced by the use of a rotated lattice for the planar encoding. We show how lattice surgery allows us to distribute encoded GHZ states in a more direct (and overhead friendly) manner, and how a demonstration of an encoded CNOT between two distance-3 logical states is possible with 53 physical qubits, half of that required in any other known construction in 2D.

  13. Binary coding for hyperspectral imagery

    NASA Astrophysics Data System (ADS)

    Wang, Jing; Chang, Chein-I.; Chang, Chein-Chi; Lin, Chinsu

    2004-10-01

    Binary coding is one of simplest ways to characterize spectral features. One commonly used method is a binary coding-based image software system, called Spectral Analysis Manager (SPAM) for remotely sensed imagery developed by Mazer et al. For a given spectral signature, the SPAM calculates its spectral mean and inter-band spectral difference and uses them as thresholds to generate a binary code word for this particular spectral signature. Such coding scheme is generally effective and also very simple to implement. This paper revisits the SPAM and further develops three new SPAM-based binary coding methods, called equal probability partition (EPP) binary coding, halfway partition (HP) binary coding and median partition (MP) binary coding. These three binary coding methods along with the SPAM well be evaluated for spectral discrimination and identification. In doing so, a new criterion, called a posteriori discrimination probability (APDP) is also introduced for performance measure.

  14. Verification of the Resistive DCON Code

    NASA Astrophysics Data System (ADS)

    Glasser, A. H.; Wang, Z. R.; Park, J.-K.

    2014-10-01

    The ideal MHD axisymmetric toroidal stability code DCON has been extended to treat resistive instabilities, with resonant surfaces at rational safety factor values of q = m / n . DCON solves the ideal MHD equations using a singular Galerkin method to obtain matching data for the ideal outer region. Robust convergence is achieved by a careful choice of basis functions: C1 Hermite cubics to resolve nonresonant solutions; a high-order power series in the neighborhood of each singular surface to resolve large and small resonant solutions; distributed with a grid-packing algorith with high resolution near the singular surfaces and adequate grid to resolve the nonresonant region. The degenerate case for β = 0 has been derived and coded up for verification, in addition to the nondegenerate case β > 0 . The DELTAR code computes corresponding inner region matching data for the resistive MHD equations of Glasser, Greene, and Johnson. The MATCH code matches the inner and outer region data to obtain global eigenvalues and eigenfunctions. The VACUUM provides data for a vacuum region outside the plasma region. The MARS-F code, which solves the same equations by a straigh-through method, is used to verify the accuracy of the DCON solution. Results will be presented.

  15. Achieving unequal error protection with convolutional codes

    NASA Technical Reports Server (NTRS)

    Mills, D. G.; Costello, D. J., Jr.; Palazzo, R., Jr.

    1994-01-01

    This paper examines the unequal error protection capabilities of convolutional codes. Both time-invariant and periodically time-varying convolutional encoders are examined. The effective free distance vector is defined and is shown to be useful in determining the unequal error protection (UEP) capabilities of convolutional codes. A modified transfer function is used to determine an upper bound on the bit error probabilities for individual input bit positions in a convolutional encoder. The bound is heavily dependent on the individual effective free distance of the input bit position. A bound relating two individual effective free distances is presented. The bound is a useful tool in determining the maximum possible disparity in individual effective free distances of encoders of specified rate and memory distribution. The unequal error protection capabilities of convolutional encoders of several rates and memory distributions are determined and discussed.

  16. The Fireball integrated code package

    SciTech Connect

    Dobranich, D.; Powers, D.A.; Harper, F.T.

    1997-07-01

    Many deep-space satellites contain a plutonium heat source. An explosion, during launch, of a rocket carrying such a satellite offers the potential for the release of some of the plutonium. The fireball following such an explosion exposes any released plutonium to a high-temperature chemically-reactive environment. Vaporization, condensation, and agglomeration processes can alter the distribution of plutonium-bearing particles. The Fireball code package simulates the integrated response of the physical and chemical processes occurring in a fireball and the effect these processes have on the plutonium-bearing particle distribution. This integrated treatment of multiple phenomena represents a significant improvement in the state of the art for fireball simulations. Preliminary simulations of launch-second scenarios indicate: (1) most plutonium vaporization occurs within the first second of the fireball; (2) large non-aerosol-sized particles contribute very little to plutonium vapor production; (3) vaporization and both homogeneous and heterogeneous condensation occur simultaneously; (4) homogeneous condensation transports plutonium down to the smallest-particle sizes; (5) heterogeneous condensation precludes homogeneous condensation if sufficient condensation sites are available; and (6) agglomeration produces larger-sized particles but slows rapidly as the fireball grows.

  17. Sinusoidal transform coding

    NASA Technical Reports Server (NTRS)

    Mcaulay, Robert J.; Quatieri, Thomas F.

    1988-01-01

    It has been shown that an analysis/synthesis system based on a sinusoidal representation of speech leads to synthetic speech that is essentially perceptually indistinguishable from the original. Strategies for coding the amplitudes, frequencies and phases of the sine waves have been developed that have led to a multirate coder operating at rates from 2400 to 9600 bps. The encoded speech is highly intelligible at all rates with a uniformly improving quality as the data rate is increased. A real-time fixed-point implementation has been developed using two ADSP2100 DSP chips. The methods used for coding and quantizing the sine-wave parameters for operation at the various frame rates are described.

  18. Finite Element Analysis Code

    2006-03-08

    MAPVAR-KD is designed to transfer solution results from one finite element mesh to another. MAPVAR-KD draws heavily from the structure and coding of MERLIN II, but it employs a new finite element data base, EXODUS II, and offers enhanced speed and new capabilities not available in MERLIN II. In keeping with the MERLIN II documentation, the computational algorithms used in MAPVAR-KD are described. User instructions are presented. Example problems are included to demonstrate the operationmore » of the code and the effects of various input options. MAPVAR-KD is a modification of MAPVAR in which the search algorithm was replaced by a kd-tree-based search for better performance on large problems.« less

  19. Confocal coded aperture imaging

    DOEpatents

    Tobin, Jr., Kenneth William; Thomas, Jr., Clarence E.

    2001-01-01

    A method for imaging a target volume comprises the steps of: radiating a small bandwidth of energy toward the target volume; focusing the small bandwidth of energy into a beam; moving the target volume through a plurality of positions within the focused beam; collecting a beam of energy scattered from the target volume with a non-diffractive confocal coded aperture; generating a shadow image of said aperture from every point source of radiation in the target volume; and, reconstructing the shadow image into a 3-dimensional image of the every point source by mathematically correlating the shadow image with a digital or analog version of the coded aperture. The method can comprise the step of collecting the beam of energy scattered from the target volume with a Fresnel zone plate.

  20. CTI Correction Code

    NASA Astrophysics Data System (ADS)

    Massey, Richard; Stoughton, Chris; Leauthaud, Alexie; Rhodes, Jason; Koekemoer, Anton; Ellis, Richard; Shaghoulian, Edgar

    2013-07-01

    Charge Transfer Inefficiency (CTI) due to radiation damage above the Earth's atmosphere creates spurious trailing in images from Charge-Coupled Device (CCD) imaging detectors. Radiation damage also creates unrelated warm pixels, which can be used to measure CTI. This code provides pixel-based correction for CTI and has proven effective in Hubble Space Telescope Advanced Camera for Surveys raw images, successfully reducing the CTI trails by a factor of ~30 everywhere in the CCD and at all flux levels. The core is written in java for speed, and a front-end user interface is provided in IDL. The code operates on raw data by returning individual electrons to pixels from which they were unintentionally dragged during readout. Correction takes about 25 minutes per ACS exposure, but is trivially parallelisable to multiple processors.

  1. Status of MARS Code

    SciTech Connect

    N.V. Mokhov

    2003-04-09

    Status and recent developments of the MARS 14 Monte Carlo code system for simulation of hadronic and electromagnetic cascades in shielding, accelerator and detector components in the energy range from a fraction of an electronvolt up to 100 TeV are described. these include physics models both in strong and electromagnetic interaction sectors, variance reduction techniques, residual dose, geometry, tracking, histograming. MAD-MARS Beam Line Build and Graphical-User Interface.

  2. VAC: Versatile Advection Code

    NASA Astrophysics Data System (ADS)

    Tóth, Gábor; Keppens, Rony

    2012-07-01

    The Versatile Advection Code (VAC) is a freely available general hydrodynamic and magnetohydrodynamic simulation software that works in 1, 2 or 3 dimensions on Cartesian and logically Cartesian grids. VAC runs on any Unix/Linux system with a Fortran 90 (or 77) compiler and Perl interpreter. VAC can run on parallel machines using either the Message Passing Interface (MPI) library or a High Performance Fortran (HPF) compiler.

  3. ASIMUT on line radiative transfer code

    NASA Astrophysics Data System (ADS)

    Vandaele, A. C.; Neary, L.; Robert, S.; Letocart, V.; Giuranna, M.; Kasaba, Y.

    2015-10-01

    The CROSS DRIVE project aims to develop an innovative collaborative workspace infrastructure for space missions that will allow distributed scientific and engineering teams to collectively analyse and interpret scientific data as well as execute operations of planetary spacecraft. ASIMUT will be one of the tools that will be made available to the users. Here we describe this radiative transfer code and how it will be integrated into the virtual environment developed within CROSS DRIVE.

  4. MELCOR computer code manuals

    SciTech Connect

    Summers, R.M.; Cole, R.K. Jr.; Smith, R.C.; Stuart, D.S.; Thompson, S.L.; Hodge, S.A.; Hyman, C.R.; Sanders, R.L.

    1995-03-01

    MELCOR is a fully integrated, engineering-level computer code that models the progression of severe accidents in light water reactor nuclear power plants. MELCOR is being developed at Sandia National Laboratories for the U.S. Nuclear Regulatory Commission as a second-generation plant risk assessment tool and the successor to the Source Term Code Package. A broad spectrum of severe accident phenomena in both boiling and pressurized water reactors is treated in MELCOR in a unified framework. These include: thermal-hydraulic response in the reactor coolant system, reactor cavity, containment, and confinement buildings; core heatup, degradation, and relocation; core-concrete attack; hydrogen production, transport, and combustion; fission product release and transport; and the impact of engineered safety features on thermal-hydraulic and radionuclide behavior. Current uses of MELCOR include estimation of severe accident source terms and their sensitivities and uncertainties in a variety of applications. This publication of the MELCOR computer code manuals corresponds to MELCOR 1.8.3, released to users in August, 1994. Volume 1 contains a primer that describes MELCOR`s phenomenological scope, organization (by package), and documentation. The remainder of Volume 1 contains the MELCOR Users Guides, which provide the input instructions and guidelines for each package. Volume 2 contains the MELCOR Reference Manuals, which describe the phenomenological models that have been implemented in each package.

  5. Bar coded retroreflective target

    DOEpatents

    Vann, Charles S.

    2000-01-01

    This small, inexpensive, non-contact laser sensor can detect the location of a retroreflective target in a relatively large volume and up to six degrees of position. The tracker's laser beam is formed into a plane of light which is swept across the space of interest. When the beam illuminates the retroreflector, some of the light returns to the tracker. The intensity, angle, and time of the return beam is measured to calculate the three dimensional location of the target. With three retroreflectors on the target, the locations of three points on the target are measured, enabling the calculation of all six degrees of target position. Until now, devices for three-dimensional tracking of objects in a large volume have been heavy, large, and very expensive. Because of the simplicity and unique characteristics of this tracker, it is capable of three-dimensional tracking of one to several objects in a large volume, yet it is compact, light-weight, and relatively inexpensive. Alternatively, a tracker produces a diverging laser beam which is directed towards a fixed position, and senses when a retroreflective target enters the fixed field of view. An optically bar coded target can be read by the tracker to provide information about the target. The target can be formed of a ball lens with a bar code on one end. As the target moves through the field, the ball lens causes the laser beam to scan across the bar code.

  6. Suboptimum decoding of block codes

    NASA Technical Reports Server (NTRS)

    Lin, Shu; Kasami, Tadao

    1991-01-01

    This paper investigates a class of decomposable codes, their distance and structural properties. it is shown that this class includes several classes of well known and efficient codes as subclasses. Several methods for constructing decomposable codes or decomposing codes are presented. A two-stage soft decision decoding scheme for decomposable codes, their translates or unions of translates is devised. This two-stage soft-decision decoding is suboptimum, and provides an excellent trade-off between the error performance and decoding complexity for codes of moderate and long block length.

  7. Preliminary Assessment of Turbomachinery Codes

    NASA Technical Reports Server (NTRS)

    Mazumder, Quamrul H.

    2007-01-01

    This report assesses different CFD codes developed and currently being used at Glenn Research Center to predict turbomachinery fluid flow and heat transfer behavior. This report will consider the following codes: APNASA, TURBO, GlennHT, H3D, and SWIFT. Each code will be described separately in the following section with their current modeling capabilities, level of validation, pre/post processing, and future development and validation requirements. This report addresses only previously published and validations of the codes. However, the codes have been further developed to extend the capabilities of the codes.

  8. Structural coding versus free-energy predictive coding.

    PubMed

    van der Helm, Peter A

    2016-06-01

    Focusing on visual perceptual organization, this article contrasts the free-energy (FE) version of predictive coding (a recent Bayesian approach) to structural coding (a long-standing representational approach). Both use free-energy minimization as metaphor for processing in the brain, but their formal elaborations of this metaphor are fundamentally different. FE predictive coding formalizes it by minimization of prediction errors, whereas structural coding formalizes it by minimization of the descriptive complexity of predictions. Here, both sides are evaluated. A conclusion regarding competence is that FE predictive coding uses a powerful modeling technique, but that structural coding has more explanatory power. A conclusion regarding performance is that FE predictive coding-though more detailed in its account of neurophysiological data-provides a less compelling cognitive architecture than that of structural coding, which, for instance, supplies formal support for the computationally powerful role it attributes to neuronal synchronization. PMID:26407895

  9. Parallel solid mechanics codes at Sandia National Laboratories

    SciTech Connect

    McGlaun, M.

    1994-08-01

    Computational physicists at Sandia National Laboratories have moved their production codes to distributed memory parallel computers. The codes include the multi-material CTH Eulerian code, structural mechanics code. This presentation discusses our experiences moving the codes to parallel computers and experiences running the codes. Moving large production codes onto parallel computers require developing parallel algorithms, parallel data bases and parallel support tools. We rewrote the Eulerian CTH code for parallel computers. We were able to move both ALEGRA and PRONTO to parallel computers with only a modest number of modifications. We restructured the restart and graphics data bases to make them parallel and minimize the I/O to the parallel computer. We developed mesh decomposition tools to divide a rectangular or arbitrary connectivity mesh into sub-meshes. The sub-meshes map to processors and minimize the communication between processors. We developed new visualization tools to process the very large, parallel data bases. This presentation also discusses our experiences running these codes on Sandia`s 1840 compute node Intel Paragon, 1024 processor nCUBE and networked workstations. The parallel version of CTH uses the Paragon and nCUBE for production calculations. The ALEGRA and PRONTO codes are moving off networked workstations onto the Paragon and nCUBE massively parallel computers.

  10. PMD mitigation through interleaving LDPC codes with polarization scramblers

    NASA Astrophysics Data System (ADS)

    Han, Dahai; Chen, Haoran; Xi, Lixia

    2013-09-01

    The combination of forward error correction (FEC) and distributed fast polarization scramblers (D-FPSs) is approved an effective method to mitigate polarization mode dispersion (PMD) in high-speed optical fiber communication system. The low-density parity-check (LDPC) codes are newly introduced into the PMD mitigation scheme with D-FPSs in this article as one of the promising FEC codes to achieve better performance. The scrambling speed of FPS for LDPC (2040, 1903) codes system is discussed, and the reasonable speed 10MHz is obtained from the simulation results. For easy application in practical large scale integrated (LSI) circuit, the number of iterations in decoding LDPC codes is also investigated. The PMD tolerance and cut-off optical signal-to-noise ratio (OSNR) of LDPC codes are compared with Reed-Solomon (RS) codes in different conditions. In the simulation, the interleaving LDPC codes bring incremental performance of error correction, and the PMD tolerance is 10ps at OSNR=11.4dB. The results show the meaning of the work is that LDPC codes are a substitute for traditional RS codes with D-FPSs and all of the executable code files are open for researchers who have practical LSI platform for PMD mitigation.

  11. The Astrophysics Source Code Library: http://www.ascl.net/

    NASA Astrophysics Data System (ADS)

    Nemiroff, R. J.; Wallin, J. F.

    1999-05-01

    Submissions are invited to the newly formed Astrophysics Source Code Library (ASCL). Original codes that have generated significant results for any paper published in a refereed astronomy or astrophysics journal are eligible for inclusion in ASCL. All submissions and personalized correspondence will be handled electronically. ASCL will not claim copyright on any of its archived codes, but will not archive codes without permission from the copyright owners. ASCL archived source codes will be indexed on the World Wide Web and made freely available for non-commercial purposes. Many results reported in astrophysics are derived though the writing and implementation of source codes. Small or large, few source codes are ever made publicly available. Because of the effort involved in the creation of scientific codes and their impact in astrophysics, we have created a site which archives and distribute codes which were used in astrophysical publications. Goals in the creation of ASCL include increasing the availability, falsifiability, and utility of source codes important to astrophysicists. ASCL is an experimental concept in its formative year - its value will be assessed from author response and user feedback in one years' time.

  12. Convolutional coding techniques for data protection

    NASA Technical Reports Server (NTRS)

    Massey, J. L.

    1975-01-01

    Results of research on the use of convolutional codes in data communications are presented. Convolutional coding fundamentals are discussed along with modulation and coding interaction. Concatenated coding systems and data compression with convolutional codes are described.

  13. System analysis of bar code laser scanner

    NASA Astrophysics Data System (ADS)

    Wang, Jianpu; Chen, Zhaofeng; Lu, Zukang

    1996-10-01

    This paper focuses on realizing the three important aspects of bar code scanner: generating a high quality scanning light beam, acquiring a fairly even distribution characteristic of light collection, achieving a low signal dynamic range over a large depth of field. To do this, we analyze the spatial distribution and propagation characteristics of scanning laser beam, the vignetting characteristic of optical collection system and their respective optimal design; propose a novel optical automatic gain control method to attain a constant collection over a large working depth.

  14. Synthesis of Amphiphilic Ru(II) Heteroleptic Complexes Based on Benzo[1,2-b:4,5-b']dithiophene: Relevance of the Half-Sandwich Complex Intermediate and Solvent Compatibility.

    PubMed

    Urbani, Maxence; Medel, María; Kumar, Sangeeta Amit; Ince, Mine; Bhaskarwar, Ashok N; González-Rodríguez, David; Grätzel, Michael; Nazeeruddin, Mohammad Khaja; Torres, Tomás

    2015-11-01

    The detailed synthesis and characterization of four ruthenium(II) complexes [RuLL'(NCS)2 ] is reported, in which L represents a 2,2'-bipyridine ligand functionalized at the 4,4' positions with benzo[1,2-b:4,5-b']dithiophene derivatives (BDT) and L' is 2,2'-bipyridine-4,4'-dicarboxylic acid unit (dcbpy) (NCS=isothiocyanate). The reaction conditions were adapted and optimized for the preparation of these amphiphilic complexes with a strong lipophilic character. The photovoltaic performances of these complexes were tested in TiO2 dye-sensitized solar cell (DSSC) achieving efficiencies in the range of 3-4.5 % under simulated one sun illumination (AM1.5G). PMID:26359935

  15. Synthesis, characterization, antimicrobial and enzymatic activity of 4b,9b-dihydroxy-7,8-dihydro-4bH-indeno[1,2-b]benzofuran-9,10(6H,9bH)-dione

    NASA Astrophysics Data System (ADS)

    Mehdi, Sayed Hasan; Hashim, Rokiah; Ghalib, Raza Murad; Fátima C. Guedes da Silva, M.; Sulaiman, Othman; Rahman, Syed Ziaur; Murugaiyah, Vikneswaran; Marimuthu, Mani Maran

    2011-12-01

    The crystal structure of the title compound, 4b,9b-dihydroxy-7,8-dihydro-4bH-indeno[1,2-b]benzofuran-9,10(6H,9bH)-dione has been determined by single crystal X-ray diffraction. It crystallizes in the monoclinic space group P2 1/c with Z = 4. The FTIR as well as the 1H and 13C NMR spectra of the compound were also recorded and briefly discussed. The compound showed potential antimicrobial activity comparable to that of clinically used antimicrobial agents against selected microorganisms. It has selective and moderate inhibitory activity on butyryl cholinesterase enzyme and could serve as potential lead compound for synthesis of more bioactive derivatives.

  16. Aryne [3 + 2] cycloaddition with N-sulfonylpyridinium imides and in situ generated N-sulfonylisoquinolinium imides: a potential route to pyrido[1,2-b]indazoles and indazolo[3,2-a]isoquinolines.

    PubMed

    Zhao, Jingjing; Li, Pan; Wu, Chunrui; Chen, Hongli; Ai, Wenying; Sun, Renhong; Ren, Hailong; Larock, Richard C; Shi, Feng

    2012-03-01

    The aryne [3 + 2] cycloaddition process with pyridinium imides breaks the aromaticity of the pyridine ring. By equipping the imide nitrogen with a sulfonyl group, the intermediate readily eliminates a sulfinate anion to restore the aromaticity, leading to the formation of pyrido[1,2-b]indazoles. The scope and limitation of this reaction are discussed. As an extension of this chemistry, N-tosylisoquinolinium imides, generated in situ from N'-(2-alkynylbenzylidene)-tosylhydrazides via an AgOTf-catalyzed 6-endo-dig electrophilic cyclization, readily undergo aryne [3 + 2] cycloaddition to afford indazolo[3,2-a]-isoquinolines in the same pot, offering a highly efficient route to these potential anticancer agents. PMID:22278679

  17. Experience with advanced nodal codes at YAEC

    SciTech Connect

    Cacciapouti, R.J.

    1990-01-01

    Yankee Atomic Electric Company (YAEC) has been performing reload licensing analysis since 1969. The basic pressurized water reactor (PWR) methodology involves the use of LEOPARD for cross-section generation, PDQ for radial power distributions and integral control rod worth, and SIMULATE for axial power distributions and differential control rod worth. In 1980, YAEC began performing reload licensing analysis for the Vermont Yankee boiling water reactor (BWR). The basic BWR methodology involves the use of CASMO for cross-section generation and SIMULATE for three-dimensional power distributions. In 1986, YAEC began investigating the use of CASMO-3 for cross-section generation and the advanced nodal code SIMULATE-3 for power distribution analysis. Based on the evaluation, the CASMO-3/SIMULATE-3 methodology satisfied all requirements. After careful consideration, the cost of implementing the new methodology is expected to be offset by reduced computing costs, improved engineering productivity, and fuel-cycle performance gains.

  18. Combinatorial neural codes from a mathematical coding theory perspective.

    PubMed

    Curto, Carina; Itskov, Vladimir; Morrison, Katherine; Roth, Zachary; Walker, Judy L

    2013-07-01

    Shannon's seminal 1948 work gave rise to two distinct areas of research: information theory and mathematical coding theory. While information theory has had a strong influence on theoretical neuroscience, ideas from mathematical coding theory have received considerably less attention. Here we take a new look at combinatorial neural codes from a mathematical coding theory perspective, examining the error correction capabilities of familiar receptive field codes (RF codes). We find, perhaps surprisingly, that the high levels of redundancy present in these codes do not support accurate error correction, although the error-correcting performance of receptive field codes catches up to that of random comparison codes when a small tolerance to error is introduced. However, receptive field codes are good at reflecting distances between represented stimuli, while the random comparison codes are not. We suggest that a compromise in error-correcting capability may be a necessary price to pay for a neural code whose structure serves not only error correction, but must also reflect relationships between stimuli. PMID:23724797

  19. Optimising code generation with haggies

    NASA Astrophysics Data System (ADS)

    Reiter, T.

    2010-07-01

    This article describes haggies, a program for the generation of optimised programs for the efficient numerical evaluation of mathematical expressions. It uses a multivariate Horner-scheme and Common Subexpression Elimination to reduce the overall number of operations. The package can serve as a back-end for virtually any general purpose computer algebra program. Built-in type inference that allows to deal with non-standard data types in strongly typed languages and a very flexible, pattern-based output specification ensure that haggies can produce code for a large variety of programming languages. We currently use haggies as part of an automated package for the calculation of one-loop scattering amplitudes in quantum field theories. The examples in this articles, however, demonstrate that its use is not restricted to the field of high energy physics. Program summaryProgram title: haggies Catalogue identifier: AEGF_v1_0 Program summary: URL: http://cpc.cs.qub.ac.uk/summaries/AEGF_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: GNU GPL v3 No. of lines in distributed program, including test data, etc.: 56 220 No. of bytes in distributed program, including test data, etc.: 579 010 Distribution format: tar.gz Programming language: Java, JavaCC Computer: Any system that runs the Java Virtual Machine Operating system: Any system that runs the Java Virtual Machine RAM: Determined by the size of the problem Classification: 4.14, 5, 6.2, 6.5, 11.1 Nature of problem: Generation of optimised programs for the evaluation of possibly large algebraic expressions Solution method: Java implementation Running time: Determined by the size of the problem

  20. On lossless coding for HEVC

    NASA Astrophysics Data System (ADS)

    Gao, Wen; Jiang, Minqiang; Yu, Haoping

    2013-02-01

    In this paper, we first review the lossless coding mode in the version 1 of the HEVC standard that has recently finalized. We then provide a performance comparison between the lossless coding mode in the HEVC and MPEG-AVC/H.264 standards and show that the HEVC lossless coding has limited coding efficiency. To improve the performance of the lossless coding mode, several new coding tools that were contributed to JCT-VC but not adopted in version 1 of HEVC standard are introduced. In particular, we discuss sample based intra prediction and coding of residual coefficients in more detail. At the end, we briefly address a new class of coding tools, i.e., a dictionary-based coder, that is efficient in encoding screen content including graphics and text.