Science.gov

Sample records for 12b-6 multi-frequency encoding

  1. Real-Time Multi-Frequency Modulation Using Differentially-Encoded Signal Constellations

    DTIC Science & Technology

    1990-06-01

    to the encoding process. The time delayphase shift property of Fourier transforms, 26 PHASE RESPONSE L : GEND Z 0 LAY Fa: 0 > c02 LJ (-o n0~ CL 260 270...above the theory which is based on statis- tically independent noise in adjacent frequency bins of the FFT. A more quantitative assessment of the system...8217syncvals. dat’); reset(vals); numrefvals := 127; (* declare 128 values out*) for j := 1 to 128 do (*read each value from *) begin (*SYNCVALS. DAT read(vals

  2. Multi-Frequency Synthesis

    NASA Astrophysics Data System (ADS)

    Conway, J. E.; Sault, R. J.

    Introduction; Image Fidelity; Multi-Frequency Synthesis; Spectral Effects; The Spectral Expansion; Spectral Dirty Beams; First Order Spectral Errors; Second Order Spectral Errors; The MFS Deconvolution Problem; Nature of The Problem; Map and Stack; Direct Assault; Data Weighting Methods; Double Deconvolution; The Sault Algorithm; Multi-Frequency Self-Calibration; Practical MFS; Conclusions

  3. Magnetic properties of GdCo12B6 compound under high pressures

    NASA Astrophysics Data System (ADS)

    Arnold, Z.; Isnard, O.; Mayot, H.; Skorokhod, Y.; Kamarád, J.; Míšek, M.

    2012-07-01

    The effects of hydrostatic pressure up to 10 kbar on Curie temperature TC, compensation temperature TCOMP and spontaneous magnetization MS of ferrimagnetic GdCo12B6 compound have been studied. Two antiferromagnetically coupled sublattices that are carrying magnetization of typically 0.42 μB/Co atom and 7 μB/Gd cancel out at compensation temperature at about 50 K and magnetic ordering temperature TC=163±2 K. The volume dependence of intrinsic magnetic properties of the GdCo12B6 compound has been determined by studying it under hydrostatic pressure. The observed increase of MS with pressure (dMS/dp=+0.005 μB kbar-1 at 5 K) is attributed predominantly to the pressure induced decrease of Co magnetic moments. The crucial role of Co in this behavior is confirmed by the change of sign of the pressure slope at temperatures above TCOMP and by the fact that the estimated decrease of mCo is also quite comparable with pressure induced decrease of MS in YCo12B6 (dMS/dp=-0.007 μB kbar-1). The decrease of mCo is also responsible for the increase of TCOMP with pressure (dTCOMP/dp=+0.06 K kbar-1). The decrease of TC with pressure (dTC/dp=-0.55 K kbar-1) is comparable to the decrease observed on RCo12B6 compounds with non-magnetic R and can be attributed to the volume dependence of Co-Co exchange interactions. The remarkable role of the hybridization as a consequence of small distances between Co and B atoms could be a background of this rather unexpected volume stability of magnetic properties.

  4. High pressure structural and magnetic studies of LaFe12B6

    NASA Astrophysics Data System (ADS)

    Diop, L. V. B.; Isnard, O.; Arnold, Z.; Itié, J. P.; Kastil, J.; Kamarad, J.

    2017-02-01

    The study of the structural and magnetic properties of LaFe12B6 under high pressure has been performed by combining angle-dispersive x-ray powder diffraction at room temperature up to 14 GPa and magnetization measurements up to 1 GPa. At ambient pressure, the itinerant-electron compound LaFe12B6 exhibits an antiferromagnetic ground state below TN=36 K. It is demonstrated that the antiferromagnetic state can be transformed into a ferromagnetic state via a field-induced first-order metamagnetic transition accompanied with a large magnetic hysteresis. The x-ray diffraction measurements under pressure reveal that the ambient pressure crystal structure of LaFe12B6 is preserved up to 14 GPa with a decrease of the unit cell parameters. A compressibility value of κ=4.90 10-3 GPa-1 has been determined. The application of an external pressure leads also to the progressive decrease of the Néel temperature dTN/dP=-4.5 K GPa-1. In addition a large pressure effect on the critical field μ0Hcr of the metamagnetic transition, dμ0Hcr/dP=24 T GPa-1, was discovered. This clearly indicates the crucial role of volume effect on the itinerant-electron metamagnetic transition.

  5. Multi-Frequency Synthesis

    NASA Astrophysics Data System (ADS)

    Sault, R. J.; Conway, J. E.

    Multi-frequency synthesis is the practice of using visibility data measured over a range of frequencies when forming a continuum image. Because observing frequency is easier to vary than antenna location, it is an effective way of filling the (u,v) plane for an observation. Here we consider the artifacts in MFS images caused by source spectral variation. For frequency ranges of about 30%, for observations where only modest dynamic range is required, the artifacts of MFS can be completely ignored. For higher dynamic range observations, some calibration techniques and deconvolution algorithms are described which minimize the artifacts.

  6. Itinerant-electron metamagnetic transition in LaFe12B6

    NASA Astrophysics Data System (ADS)

    Fujieda, S.; Fukamichi, K.; Suzuki, S.

    2017-01-01

    LaFe12B6 (SrNi12B6-type) is an antiferromagnet with a low moment of 0.36 μB/Fe-atom in the ground state. The field-induced first-order transition takes place in a wide range of temperature including below and above the Néel temperature of 35 K. This transition results in a high moment of 1.6 μB/Fe-atom, being characteristics of the itinerant-electron metamagnetic transition. The critical magnetic field of the metamagnetic transition BC increases with increasing temperature except for low temperature ranges, in which the kinetic arrest occurs. Above the arrested temperature, the sign of the temperature dependence of dBC/dT is positive. The metamagnetic transition brings about large magnetocaloric effects, that is, a large negative value of the isothermal magnetic entropy change, ΔSm, and a large positive value of the adiabatic temperature change, ΔTad.

  7. Ultrasharp magnetization steps in the antiferromagnetic itinerant-electron system LaF e12B6

    NASA Astrophysics Data System (ADS)

    Diop, L. V. B.; Isnard, O.; Rodríguez-Carvajal, J.

    2016-01-01

    The remarkable intrinsic magnetic properties of the LaF e12B6 compound have been studied by neutron powder diffraction (NPD) and magnetization measurements. The NPD measurement reveals that LaF e12B6 exhibits an antiferromagnetic (AFM) structure that can be described with a magnetic propagation vector of (¼, ¼, ¼) below TN. In the amplitude-modulated model used for the refinement, the Fe magnetic moments are confined to the a b plane with a maximum value of 0.43 μB at 1.5 K. It is shown that the AFM state can be transformed to a ferromagnetic (FM) state via a field-induced first-order transition accompanied with a huge magnetic hysteresis. The LaF e12B6 compound is not only the unique stable R F e12B6 phase, along the rare-earth R series but also presents unique magnetic behavior for a purely 3 d itinerant electron system, including particularly low ordering temperature TN=36 K , remarkably small Fe moment, unusual amplitude-modulated magnetic arrangement, and a multicritical point in the magnetic phase diagram. In addition, we reveal that at 2 K, the AFM-FM transition is abrupt, leading to a large increase of the Fe magnetic moment up to 1.55 μB ; the magnetization curve presents ultrasharp steps, giving rise to an unusual staircaselike behavior.

  8. High magnetic field study of the Gd-Co exchange interactions in GdCo12B6

    NASA Astrophysics Data System (ADS)

    Isnard, O.; Skourski, Y.; Diop, L. V. B.; Arnold, Z.; Andreev, A. V.; Wosnitza, J.; Iwasa, A.; Kondo, A.; Matsuo, A.; Kindo, K.

    2012-05-01

    Pulsed magnetic fields up to 68 Tesla have been used to determine the intersublattice coupling strength and its temperature dependence of GdCo12B6 compound. This compound exhibits ferrimagnetic behaviour below 163 ± 2 K. Two antiferromagnetically coupled sublattices cancel out at compensation temperature at about 48 K. They are carrying magnetization of typically 0.42 μB/Co atom and 7 μB/Gd. The intrinsic magnetic properties of the GdCo12B6 compound have been determined by combining low temperature magnetic measurements in both steady and pulsed magnetic field, as well as isofield studies in steady field. At 4.2 K, the magnetization curve of GdCo12B6 is found to reach the full saturation with sum of both sublattice magnetizations for an applied magnetic field of about 68 T. In addition a detailed study is presented in the whole ordered temperature range on the basis of magnetization curves recorded using pulsed magnetic field up to 60 T. This has enabled to investigate the intersublattice coupling strength and its temperature dependence, a value JCo-Gd/kB = -5.3 ± 0.3 K is derived from the magnetization curves whereas one gets much larger value for JCo-Co/kB = 108 K.

  9. Application of Multi-Frequency Modulation (MFM) facsimile machines

    NASA Astrophysics Data System (ADS)

    Nickerson, James T.

    1990-09-01

    Multi-Frequency Modulation (MFM) has been developed at NPS using both differential quadrature-amplitude-modulation (DQAM) and differential quadrature-phase-shift-keying (DQPSK) encoding formats. This report discusses the use of each of these formats in transmitting a facsimile encoded message over a voice frequency channel. The satisfactory transmission and receipt of facsimile messages was achieved using both DQPSK and D16-QAM encoding formats. Research and testing for this report included the use of variable facsimile transmission rates in an attempt to optimize MFM operating parameters. Experimental results revealed a higher error rate when decoding messages contained similar contiguous characters.

  10. Multi-frequency imaging in VLBI

    NASA Astrophysics Data System (ADS)

    Likhachev, S.

    The new technique, multi-frequency imaging ( MFI) is developed. In VLBI, Multi-Frequency Imaging (MFI) consists of multi-frequency synthesis (MFS) and multi-frequency analysis (MFA) of the VLBI data obtained from observations on various frequencies. A set of linear deconvolution MFI algorithms is described. The algorithms make it possible to obtain high quality images interpolated on any given frequency inside any given bandwidth, and to derive reliable estimates of spectral indexes for radio sources with continuum spectrum. Thus MFI approach makes it is possible not only to improve the quality and fidelity of the images and also essentially to derive the morphology of the observed radio sources. (astro-ph/0412470)

  11. Multi-Frequency Band Pyroelectric Sensors

    PubMed Central

    Hsiao, Chun-Ching; Liu, Sheng-Yi

    2014-01-01

    A methodology is proposed for designing a multi-frequency band pyroelectric sensor which can detect subjects with various frequencies or velocities. A structure with dual pyroelectric layers, consisting of a thinner sputtered ZnO layer and a thicker aerosol ZnO layer, proved helpful in the development of the proposed sensor. The thinner sputtered ZnO layer with a small thermal capacity and a rapid response accomplishes a high-frequency sensing task, while the thicker aerosol ZnO layer with a large thermal capacity and a tardy response is responsible for low-frequency sensing tasks. A multi-frequency band pyroelectric sensor is successfully designed, analyzed and fabricated in the present study. The range of the multi-frequency sensing can be estimated by means of the proposed design and analysis to match the thicknesses of the sputtered and the aerosol ZnO layers. The fabricated multi-frequency band pyroelectric sensor with a 1 μm thick sputtered ZnO layer and a 20 μm thick aerosol ZnO layer can sense a frequency band from 4000 to 40,000 Hz without tardy response and low voltage responsivity. PMID:25429406

  12. Multi-Frequency Intravascular Ultrasound (IVUS) Imaging

    PubMed Central

    Ma, Teng; Yu, Mingyue; Chen, Zeyu; Fei, Chunlong; Shung, K. Kirk; Zhou, Qifa

    2015-01-01

    Acute coronary syndrome (ACS) is frequently associated with the sudden rupture of a vulnerable atherosclerotic plaque within the coronary artery. Several unique physiological features, including a thin fibrous cap accompanied by a necrotic lipid core, are the targeted indicators for identifying the vulnerable plaques. Intravascular ultrasound (IVUS), a catheter-based imaging technology, has been routinely performed in clinics for more than 20 years to describe the morphology of the coronary artery and guide percutaneous coronary interventions. However, conventional IVUS cannot facilitate the risk assessment of ACS because of its intrinsic limitations, such as insufficient resolution. Renovation of the IVUS technology is essentially needed to overcome the limitations and enhance the coronary artery characterization. In this paper, a multi-frequency intravascular ultrasound (IVUS) imaging system was developed by incorporating a higher frequency IVUS transducer (80 to 150 MHz) with the conventional IVUS (30–50 MHz) system. The newly developed system maintains the advantage of deeply penetrating imaging with the conventional IVUS, while offering an improved higher resolution image with IVUS at a higher frequency. The prototyped multi-frequency catheter has a clinically compatible size of 0.95 mm and a favorable capability of automated image co-registration. In vitro human coronary artery imaging has demonstrated the feasibility and superiority of the multi-frequency IVUS imaging system to deliver a more comprehensive visualization of the coronary artery. This ultrasonic-only intravascular imaging technique, based on a moderate refinement of the conventional IVUS system, is not only cost-effective from the perspective of manufacturing and clinical practice, but also holds the promise of future translation into clinical benefits. PMID:25585394

  13. Multi-frequency communication system and method

    DOEpatents

    Carrender, Curtis Lee; Gilbert, Ronald W.

    2004-06-01

    A multi-frequency RFID remote communication system is provided that includes a plurality of RFID tags configured to receive a first signal and to return a second signal, the second signal having a first frequency component and a second frequency component, the second frequency component including data unique to each remote RFID tag. The system further includes a reader configured to transmit an interrogation signal and to receive remote signals from the tags. A first signal processor, preferably a mixer, removes an intermediate frequency component from the received signal, and a second processor, preferably a second mixer, analyzes the IF frequency component to output data that is unique to each remote tag.

  14. Generalized Linear Multi-Frequency Imaging in VLBI

    NASA Astrophysics Data System (ADS)

    Likhachev, S.; Ladygin, V.; Guirin, I.

    2004-07-01

    In VLBI, generalized Linear Multi-Frequency Imaging (MFI) consists of multi-frequency synthesis (MFS) and multi-frequency analysis (MFA) of the VLBI data obtained from observations on various frequencies. A set of linear deconvolution MFI algorithms is described. The algorithms make it possible to obtain high quality images interpolated on any given frequency inside any given bandwidth, and to derive reliable estimates of spectral indexes for radio sources with continuum spectrum.

  15. Temperature rise in tissue ablation using multi-frequency ultrasound.

    PubMed

    Sijia Guo; Yun Jing; Xiaoning Jiang

    2013-08-01

    High-intensity focused ultrasound (HIFU) is becoming an increasingly important noninvasive surgical tool, despite the challenges in temperature rise control and unwanted heating problems. In this study, experiments and simulations on tissue ablation effectiveness were performed using multi-frequency HIFU with frequency differences of more than 500 kHz (center frequencies are 950 kHz, 1.5 MHz, and 3.3 MHz). In the experiments, the temperature was recorded as chicken breast tissue was heated by single-frequency, dual-frequency, and tri-frequency HIFU configurations at controlled acoustic power and exposure time. 5% to 10% temperature rise differences were observed between single- and multi-frequency modes, indicating that multi-frequency HIFU is more effective at producing faster temperature rises. Cavitation detection tests were conducted to compare the cavitation pressure fields between single- and multi-frequency ultrasound. Moreover, simulations on single-frequency and multi-frequency acoustic fields as well as bio-heating-induced temperature fields were performed. With the comparison between experimental and simulation results, we believe that the more effective tissue ablation using multi-frequency ultrasound is likely attributed to the enhanced cavitation, a promising result for HIFU applications.

  16. Experimental diagnostics of multi-frequency quasiperiodic oscillations

    NASA Astrophysics Data System (ADS)

    Stankevich, N. V.; Kuznetsov, A. P.; Popova, E. S.; Seleznev, E. P.

    2017-02-01

    We suggest a new technique of fold Poincaré section, allowing one to visualize an invariant curve of a multi-frequency invariant torus in a physical experiment. Details of the technique are presented, along with examples of its application to various experimental studies. Examples of how an invariant curve is visualized in double-, triple- and four-fold Poincaré sections are shown.

  17. Application of Multi-Frequency Modulation (MFM) for high-speed data communications to a voice frequency channel

    NASA Astrophysics Data System (ADS)

    Salsman, Charles P.

    1990-06-01

    Multi-Frequency Modulation (MFM) has been developed at NPS using both differential quadrature-phase-shift-keying (DQPSK) and differential-quadrature-amplitude-modulation (DQAM) encoding formats. Previous applications of these encoding formats were on industry standard computers (PC) over a 16 to 20 kHz channel. This report discusses the implementation of MFM to a voice frequency channel of 200 to 3400 Hz, for possible future use with high-speed modems over switched telephone networks. Research and testing for this report included the DQPSK and differential 16 quadrature-amplitude-modulation (D16-QAM) encoding formats implemented on PCs. Experimental results of the implemented MFM signal were comparable to theory with acceptable bit error rates for input signal-to-noise ratios (SNR) of 15 dB and higher.

  18. A multi-frequency method for ultrasonic ranging.

    PubMed

    Queirós, Ricardo; Corrêa Alegria, Francisco; Silva Girão, Pedro; Cruz Serra, António

    2015-12-01

    This paper presents a method for ultrasonic ranging based on the cross-correlation of two multi-frequency signals. The stimulus signal is composed by multiple sine-wave bursts/segments, each containing a different frequency and an integer number of periods. The frequency of each sine-wave burst is different from that of the adjacent bursts, but it is very close to the transducer resonant frequency. The time-of-flight (TOF) is estimated by finding the maximum of the cross-correlation. Interpolation is used to increase the measurement resolution. The experimental error corresponding to two standard deviations, for a range up to 1 m, is less than 0.3 mm.

  19. Microfabricated multi-frequency particle impedance characterization system

    SciTech Connect

    Fuller, C K; Hamilton, J; Ackler, H; Krulevitch, P; Boser, B; Eldredge, A; Becker, F; Yang, J; Gascoyne, P

    2000-03-01

    We have developed a microfabricated flow-through impedance characterization system capable of performing AC, multi-frequency measurements on cells and other particles. The sensor measures both the resistive and reactive impedance of passing particles, at rates of up to 100 particles per second. Its operational bandwidth approaches 10 MHz with a signal-to-noise ratio of approximately 40 dB. Particle impedance is measured at three or more frequencies simultaneously, enabling the derivation of multiple particle parameters. This constitutes an improvement to the well-established technique of DC particle sizing via the Coulter Principle. Human peripheral blood granulocyte radius, membrane capacitance, and cytoplasmic conductivity were measured (r = 4.1 {micro}m, C{sub mem} = 0.9 {micro}F/cm{sup 2}, {sigma}{sub int} = 0.66 S/m) and were found to be consistent with published values.

  20. A multi-frequency MRCSI algorithm with phaseless data

    NASA Astrophysics Data System (ADS)

    Hu, Zheng; Lianlin, Li; Fang, Li

    2009-06-01

    This paper presents a novel multi-frequency multiplicative regularized contrast source inversion (MRCSI) algorithm with phaseless data (PD-MRCSI) for solving a two-dimensional scalar inverse scattering problem. The MRCSI method resolves the inverse scattering problem by minimization of a cost functional which is a linear combination of mismatches in the data equation and the state equation. Through modifying the mismatch in the data equation, we construct a new cost functional which is suitable for the inverse scattering problem with phaseless data. Similar to the MRCSI algorithm, the new cost functional can be minimized by alternatively updating the unknown contrast source and contrast using the so-called Polak-Ribere conjugate gradient method. Numerical results show that the proposed algorithm works effectively and efficiently for solving the inverse scattering problem with phaseless data.

  1. III-V-on-silicon multi-frequency lasers.

    PubMed

    Keyvaninia, S; Verstuyft, S; Pathak, S; Lelarge, F; Duan, G-H; Bordel, D; Fedeli, J-M; De Vries, T; Smalbrugge, B; Geluk, E J; Bolk, J; Smit, M; Roelkens, G; Van Thourhout, D

    2013-06-03

    Compact multi-frequency lasers are realized by combining III-V based optical amplifiers with silicon waveguide optical demultiplexers using a heterogeneous integration process based on adhesive wafer bonding. Both devices using arrayed waveguide grating routers as well as devices using ring resonators as the demultiplexer showed lasing with threshold currents between 30 and 40 mA and output powers in the order of a few mW. Laser operation up to 60°C is demonstrated. The small bending radius allowable for the silicon waveguides results in a short cavity length, ensuring stable lasing in a single longitudinal mode, even with relaxed values for the intra-cavity filter bandwidths.

  2. Acoustic metamaterial panels based on multi frequency vibration absorbers

    NASA Astrophysics Data System (ADS)

    Shi, Chao; Sun, Hongwei; Hu, Xiaolei; Gu, Jinliang

    2016-04-01

    Presented here is a new metamaterial panel based on multi-frequency vibration absorbers for broadband vibration absorption. The proposed metamaterial panel consists of a uniform isotropic panel and small two-mass spring-mass-damper subsystem many locations along the panel to act as multi-frequency vibration absorbers. The existence of two stopbands is demonstrated using a model based on averaging material properties over a cell length and a model based on finite element modeling and the Bloch-Floquet theory for periodic structures. For a finite metamaterial panel, because these two idealized models can not be used for finite panels and/or elastic waves having short wavelengths, a finite-element method is used for detailed modeling and analysis. The concepts of negative effective stiffness is explained in detail. For an incoming wave with a frequency in one of the two stopbands, the absorbers are excited to vibrate in their optical modes to create shear forces to straighten the panel and stop the wave propagation. For an incoming wave with a frequency outside of but between the two stopbands, it can be efficiently damped out by the damper with these mass of each absorber. Hence, the two stopbands are connected in to a wide stopband. Numerical examples validate the concept and show that the structures boundary conditions do not have significant influence on the absorption of high-frequency waves. However, for absorption of low-frequency waves, the structures boundary conditions and resonance frequencies and the location and spatial distribution of absorbers need to be considered in design, and it is better to use heavier masses for absorbers.

  3. A multi-frequency approach to soil moisture measurements

    NASA Astrophysics Data System (ADS)

    Castiglione, Paolo; Campbell, Colin S.; Cobos, Doug R.; Campbell, Gaylon S.

    2014-05-01

    clay) and four salinities (pore water from 0 to 15 dS/m). The regression analysis with multi-frequency predictors was carried out through an artificial neural network. Results show considerable improvement of the proposed multi-frequency approach over conventional single frequency measurements.

  4. Acoustic metamaterial structures based on multi-frequency vibration absorbers

    NASA Astrophysics Data System (ADS)

    Pai, P. Frank; Peng, Hao

    2014-03-01

    This paper presents a new metamaterial beam based on multi-frequency vibration absorbers for broadband vibration absorption. The proposed metamaterial beam consists of a uniform isotropic beam and small two-mass spring-mass- damper subsystems at many locations along the beam to act as multi-frequency vibration absorbers. For an infinite metamaterial beam, governing equations of a unit cell are derived using the extended Hamilton principle. The existence of two stopbands is demonstrated using a model based on averaging material properties over a cell length and a model based on finite element modeling and the Bloch-Floquet theory for periodic structures. For a finite metamaterial beam, because these two idealized models cannot be used for finite beams and/or elastic waves having short wavelengths, a finite-element method is used for detailed modeling and analysis. The concepts of negative effective mass and effective stiffness and how the spring-mass-damper subsystem creates two stopbands are explained in detail. Numerical simulations reveal that the actual working mechanism of the proposed metamaterial beam is based on the concept of conventional mechanical vibration absorbers. For an incoming wave with a frequency in one of the two stopbands, the absorbers are excited to vibrate in their optical modes to create shear forces to straighten the beam and stop the wave propagation. For an incoming wave with a frequency outside of but between the two stopbands, it can be efficiently damped out by the damper with the second mass of each absorber. Hence, the two stopbands are connected into a wide stopband. Numerical examples validate the concept and show that the structure's boundary conditions do not have significant influence on the absorption of high-frequency waves. However, for absorption of low-frequency waves, the structure's boundary conditions and resonance frequencies and the location and spatial distribution of absorbers need to be considered in design, and it

  5. Multi-frequency encoding for fast color flow or quadroplex imaging.

    PubMed

    Oddershede, Niels; Gran, Fredrik; Jensen, Jørgen Arendt

    2008-04-01

    Ultrasonic color flow maps are made by estimating the velocities line by line over the region of interest. For each velocity estimate, multiple repetitions are needed. This sets a limit on the frame rate, which becomes increasingly severe when imaging deeper lying structures or when simultaneously acquiring spectrogram data for triplex imaging. This paper proposes a method for decreasing the data acquisition time by simultaneously sampling multiple lines for color flow maps, using narrow band signals with approximately disjoint spectral support. The signals are separated in the receiver by filters matched to the emitted waveforms, producing a number of data sets with different center frequencies. The autocorrelation estimator is then applied to each of the data sets. The method is presented, various side effects are considered, and the method is tested on data from a recirculating flow phantom. A mean standard deviation across the flow profile of 3.1, 2.5, and 2.1% of the peak velocity was found for bands at 5 MHz, 7 MHz, and 9 MHz, respectively. Alternatively, the method can be used for simultaneously sampling data for a color flow map and for multiple spectrograms using different spectral bands. Using three spectral bands, data for a color flow map and two independent spectrograms can be acquired at the time normally spent on acquiring data for a color flow map only. This yields an expansion of triplex imaging called multifrequency quadroplex imaging, which enables study of the flow over an arterial stenosis by simultaneously acquiring spectrograms on both sides of the stenosis, while maintaining the color flow map. The method was tested in vivo on data from the common carotid artery of a healthy male volunteer, both for fast color flow mapping and for multifrequency quadroplex imaging.

  6. Multi-frequency metal detector in high mineralization

    NASA Astrophysics Data System (ADS)

    Stamatescu, Laurence; Harmer, Gregory; Nesper, Oliver; Bordean, Dorin; Tkachenko, Yuri

    2009-05-01

    The successful detection and discrimination of mines is very difficult in areas of high soil mineralization. In these areas, the soil can make a significant contribution to the received signal that causes false detections or masks the true mine response. To address this problem, Minelab has developed a continuous wave (CW) multi-frequency digital detector (MFDD). It transmits four frequencies (between 1 kHz and 45 kHz) and each has a high dynamic range that approaches 120 dB. The mineralized soil with high magnetic susceptibility affects the characteristics of the sensor-head, in particular the inductance of the transmitting and receiving windings. These in turn affect the front-end electronics and measuring circuits and can lead to excessive ground noise that makes detection difficult. Minelab has modeled the effect that the soil has on the sensor-head and developed methods to monitor these effects. By having a well calibrated detector, which is demonstrated by the tight agreement of raw ground signals with theoretical ground models, the tasks of ground balance and discrimination become much more reliable and robust.

  7. The status of the QUIJOTE multi-frequency instrument

    NASA Astrophysics Data System (ADS)

    Hoyland, R. J.; Aguiar-González, M.; Aja, B.; Ariño, J.; Artal, E.; Barreiro, R. B.; Blackhurst, E. J.; Cagigas, J.; Cano de Diego, J. L.; Casas, F. J.; Davis, R. J.; Dickinson, C.; Arriaga, B. E.; Fernandez-Cobos, R.; de la Fuente, L.; Génova-Santos, R.; Gómez, A.; Gomez, C.; Gómez-Reñasco, F.; Grainge, K.; Harper, S.; Herran, D.; Herreros, J. M.; Herrera, G. A.; Hobson, M. P.; Lasenby, A. N.; Lopez-Caniego, M.; López-Caraballo, C.; Maffei, B.; Martinez-Gonzalez, E.; McCulloch, M.; Melhuish, S.; Mediavilla, A.; Murga, G.; Ortiz, D.; Piccirillo, L.; Pisano, G.; Rebolo-López, R.; Rubiño-Martin, J. A.; Ruiz, J. Luis; Sanchez de la Rosa, V.; Sanquirce, R.; Vega-Moreno, A.; Vielva, P.; Viera-Curbelo, T.; Villa, E.; Vizcargüenaga, A.; Watson, R. A.

    2012-09-01

    The QUIJOTE-CMB project has been described in previous publications. Here we present the current status of the QUIJOTE multi-frequency instrument (MFI) with five separate polarimeters (providing 5 independent sky pixels): two which operate at 10-14 GHz, two which operate at 16-20 GHz, and a central polarimeter at 30 GHz. The optical arrangement includes 5 conical corrugated feedhorns staring into a dual reflector crossed-draconian system, which provides optimal cross-polarization properties (designed to be < -35 dB) and symmetric beams. Each horn feeds a novel cryogenic on-axis rotating polar modulator which can rotate at a speed of up to 1 Hz. The science driver for this first instrument is the characterization of the galactic emission. The polarimeters use the polar modulator to derive linear polar parameters Q, U and I and switch out various systematics. The detection system provides optimum sensitivity through 2 correlated and 2 total power channels. The system is calibrated using bright polarized celestial sources and through a secondary calibration source and antenna. The acquisition system, telescope control and housekeeping are all linked through a real-time gigabit Ethernet network. All communication, power and helium gas are passed through a central rotary joint. The time stamp is synchronized to a GPS time signal. The acquisition software is based on PLCs written in Beckhoffs TwinCat and ethercat. The user interface is written in LABVIEW. The status of the QUIJOTE MFI will be presented including pre-commissioning results and laboratory testing.

  8. Multi-Frequency Soliton Complex in Er/Yb-Doped Fiber Amplifier

    NASA Technical Reports Server (NTRS)

    Kang, Jin U.; Kim, Do-Hyun; Khurgin, Jacob B.; Akhmediev, Nail N.; Han, Haewook; Shaw, Harry; Day, John H. (Technical Monitor)

    2001-01-01

    We experimentally investigated presence of multi-frequency soliton complex that exist in high power Er/Yb-doped Fiber Amplifier. The complex with the spectral bandwidth in excess of 100 nm is bound by the Kerr nonlinearity and exhibit stable propagation.

  9. Multi-frequency Imaging Algorithms and Simulation of Space VLBI Using the VLA

    NASA Astrophysics Data System (ADS)

    Likhachev, S.; Kogan, L.; Fomalont, E.; Owen, F.

    2009-08-01

    New Multi-Frequency Synthesis (MFS) algorithms were developed and implemented in the Astro Space Locator (ASL) operating under MS Windows system. In November 2005 multi-frequency VLA observations of the radio source M87 were carried out at the following frequencies: 14.7, 15.2 21.3, 22.2, 23.0, and 23.4 GHz. We used the new MFS algorithms to determine the structure of M87 at the central frequency (19 GHz) and obtained both the image and spectral index map of the source. Comparison with more straight-forward imaging techniques (with single frequency images) shows that the new MFS algorithms increase the fidelity of the image by at least a factor of two and provides accurate spectral indices across the emission. Application to simulated Radioastron data is also shown.

  10. Multi-Frequency Target Detection Techniques for DVB-T Based Passive Radar Sensors

    PubMed Central

    Martelli, Tatiana; Colone, Fabiola; Tilli, Enrico; Di Lallo, Annarita

    2016-01-01

    This paper investigates the possibility to improve target detection capability in a DVB-T- based passive radar sensor by jointly exploiting multiple digital television channels broadcast by the same transmitter of opportunity. Based on the remarkable results obtained by such a multi-frequency approach using other signals of opportunity (i.e., FM radio broadcast transmissions), we propose appropriate modifications to the previously devised signal processing techniques for them to be effective in the newly considered scenarios. The resulting processing schemes are extensively applied against experimental DVB-T-based passive radar data pertaining to different surveillance applications. The obtained results clearly show the effectiveness of the proposed multi-frequency approaches and demonstrate their suitability for application in the considered scenarios. PMID:27690036

  11. Multi-Frequency Target Detection Techniques for DVB-T Based Passive Radar Sensors.

    PubMed

    Martelli, Tatiana; Colone, Fabiola; Tilli, Enrico; Di Lallo, Annarita

    2016-09-28

    This paper investigates the possibility to improve target detection capability in a DVB-T- based passive radar sensor by jointly exploiting multiple digital television channels broadcast by the same transmitter of opportunity. Based on the remarkable results obtained by such a multi-frequency approach using other signals of opportunity (i.e., FM radio broadcast transmissions), we propose appropriate modifications to the previously devised signal processing techniques for them to be effective in the newly considered scenarios. The resulting processing schemes are extensively applied against experimental DVB-T-based passive radar data pertaining to different surveillance applications. The obtained results clearly show the effectiveness of the proposed multi-frequency approaches and demonstrate their suitability for application in the considered scenarios.

  12. OCT based on multi-frequency sweeping Fizeau interferometer with phase modulating method

    NASA Astrophysics Data System (ADS)

    Choi, S.; Watanabe, T.; Sasaki, O.; Suzuki, T.

    2013-09-01

    The Multi-frequency sweeping Fizeau-type interferometer (MFS-FI) for optical coherence tomography (OCT) is demonstrated. The multi-frequency sweeping by a variable Fabry-Perot filter permits detection of high-order low-coherence interferometric signals in the Fizeau interferometer. The sinusoidal phase modulation technique was utilized to detect accurate interference amplitude and phase distributions of back scattered light from surfaces of a sample. OCT measurements by the MFS-FI were conducted for vibrating glass plates with a frequency of 1 kHz, and cellular tissues fixed with formalin and embedded in paraffin. The tomographic 3-dimensional volume and cross-sectional surface displacements were detected with an accuracy of nano-meters.

  13. Analysis of photonic crystal and multi-frequency terahertz microstrip patch antenna

    NASA Astrophysics Data System (ADS)

    Yang, Lechen; Shi, Xueshun; Chen, Kunfeng; Fu, Kai; Zhang, Baoshun

    2013-12-01

    In this paper, two-dimensional photonic crystals working at terahertz (THz) frequency is analyzed, a multi-frequency terahertz microstrip patch antenna on photonic crystal substrate is presented and its electromagnetic wave propagation phenomenon is investigated. The proposed antenna can work at five frequency points' scope at terahertz frequency regions, and the radiation efficiency is as high as ~96%. The photonic crystal structure of the substrate is used to enhance the gain, directivity and radiation efficiency of the antenna.

  14. A Kernel Machine Framework for Feature Optimization in Multi-frequency Sonar Imagery

    DTIC Science & Technology

    2006-09-01

    best performance with the fewest number of basis Table III OBJECT MEASUREMENTS USED TO CONSTRUCT FEATURES Textural Measurements GLCM Contrast...each object in each image, 17 measurements are made and used to construct the features . Of these 17 measurements, 5 are textural based and are...A Kernel Machine Framework for Feature Optimization in Multi-frequency Sonar Imagery J.R. Stack and R. Arrieta Naval Surface Warfare Center

  15. Reconstruction of Flaw Profiles Using Neural Networks and Multi-Frequency Eddy Current System

    SciTech Connect

    Chady, T.; Caryk, M.

    2005-04-09

    The objective of this paper is to identify profiles of flaws in conducting plates. To solve this problem, application of a multi-frequency eddy current system (MFES) and artificial neural networks is proposed. Dynamic feed-forward neural networks with various architectures are investigated. Extended experiments with all neural models are carried out in order to select the most promising configuration. Data utilized for the experiments were obtained from the measurements performed on the Inconel plates with EDM flaws.

  16. Classifying multi-frequency fisheries acoustic data using a robust probabilistic classification technique.

    PubMed

    Anderson, C I H; Horne, J K; Boyle, J

    2007-06-01

    A robust probabilistic classification technique, using expectation maximization of finite mixture models, is used to analyze multi-frequency fisheries acoustic data. The number of clusters is chosen using the Bayesian Information Criterion. Probabilities of membership to clusters are used to classify each sample. The utility of the technique is demonstrated using two examples: the Gulf of Alaska representing a low-diversity, well-known system; and the Mid-Atlantic Ridge, a species-rich, relatively unknown system.

  17. A multi-scale multi-frequency deconvolution algorithm for synthesis imaging in radio interferometry

    NASA Astrophysics Data System (ADS)

    Rau, U.; Cornwell, T. J.

    2011-08-01

    Aims: We describe MS-MFS, a multi-scale multi-frequency deconvolution algorithm for wide-band synthesis-imaging, and present imaging results that illustrate the capabilities of the algorithm and the conditions under which it is feasible and gives accurate results. Methods: The MS-MFS algorithm models the wide-band sky-brightness distribution as a linear combination of spatial and spectral basis functions, and performs image-reconstruction by combining a linear-least-squares approach with iterative χ2 minimization. This method extends and combines the ideas used in the MS-CLEAN and MF-CLEAN algorithms for multi-scale and multi-frequency deconvolution respectively, and can be used in conjunction with existing wide-field imaging algorithms. We also discuss a simpler hybrid of spectral-line and continuum imaging methods and point out situations where it may suffice. Results: We show via simulations and application to multi-frequency VLA data and wideband EVLA data, that it is possible to reconstruct both spatial and spectral structure of compact and extended emission at the continuum sensitivity level and at the angular resolution allowed by the highest sampled frequency.

  18. Multi-frequency AOM for multi-beam laser scanning exposure system

    NASA Astrophysics Data System (ADS)

    Shinada, Hidetoshi

    2016-10-01

    Digital printing systems recorded on films or computer to plates (CTPs) have been required to improve their productivity and image quality. Under the circumstance, a printing technology of the multi-beam laser scanning for the drum capstan system, which is almost the same as optics configuration as the flat bed system, was developed using a newly developed multi-frequency acousto-optic modulator (AOM) as a key device instead of ultra-fast scanning devices toward a main scan direction. The multi-frequency AOM was developed with phased array-type transducers, achieving a wider bandwidth of over 160 MHz. The design consisted of a simultaneous three beams generation with interlace scan to avoid the beat effect by adjacent Doppler-shifted beams, which consequently attained the fastest recording speed of 5.0 mm/s compared with 2.0-3.0 mm/s of existing systems in those days. Furthermore, a couple of critical parameters of the multi-frequency AOM are studied, for example, a treatment of third-order intermodulation and also beat effect in connection with photosensitive media. As a result, the necessity of interlaces scanning to obtain good image quality without beat effect and also to allow a lower laser power to apply is proposed.

  19. A practical implementation of multi-frequency widefield frequency-domain FLIM

    PubMed Central

    Chen, Hongtao

    2013-01-01

    Widefield frequency-domain fluorescence lifetime imaging microscopy (FD-FLIM) is a fast and accurate method to measure the fluorescence lifetime, especially in kinetic studies in biomedical researches. However, the small range of modulation frequencies available in commercial instruments makes this technique limited in its applications. Here we describe a practical implementation of multi-frequency widefield FD-FLIM using a pulsed supercontinuum laser and a direct digital synthesizer. In this instrument we use a pulse to modulate the image intensifier rather than the more conventional sine wave modulation. This allows parallel multi-frequency FLIM measurement using the Fast Fourier Transform and the cross-correlation technique, which permits precise and simultaneous isolation of individual frequencies. In addition, the pulse modulation at the cathode of image intensifier restored the loss of optical resolution caused by the defocusing effect when the voltage at the cathode is sinusoidally modulated. Furthermore, in our implementation of this technique, data can be graphically analyzed by the phasor method while data are acquired, which allows easy fit-free lifetime analysis of FLIM images. Here our measurements of standard fluorescent samples and a Föster resonance energy transfer pair demonstrate that the widefield multi-frequency FLIM system is a valuable and simple tool in fluorescence imaging studies. PMID:23296945

  20. Inversion of multi-frequency electromagnetic induction data for 3D characterization of hydraulic conductivity

    USGS Publications Warehouse

    Brosten, T.R.; Day-Lewis, F. D.; Schultz, G.M.; Curtis, G.P.; Lane, J.W.

    2011-01-01

    Electromagnetic induction (EMI) instruments provide rapid, noninvasive, and spatially dense data for characterization of soil and groundwater properties. Data from multi-frequency EMI tools can be inverted to provide quantitative electrical conductivity estimates as a function of depth. In this study, multi-frequency EMI data collected across an abandoned uranium mill site near Naturita, Colorado, USA, are inverted to produce vertical distribution of electrical conductivity (EC) across the site. The relation between measured apparent electrical conductivity (ECa) and hydraulic conductivity (K) is weak (correlation coefficient of 0.20), whereas the correlation between the depth dependent EC obtained from the inversions, and K is sufficiently strong to be used for hydrologic estimation (correlation coefficient of -0.62). Depth-specific EC values were correlated with co-located K measurements to develop a site-specific ln(EC)-ln(K) relation. This petrophysical relation was applied to produce a spatially detailed map of K across the study area. A synthetic example based on ECa values at the site was used to assess model resolution and correlation loss given variations in depth and/or measurement error. Results from synthetic modeling indicate that optimum correlation with K occurs at ~0.5m followed by a gradual correlation loss of 90% at 2.3m. These results are consistent with an analysis of depth of investigation (DOI) given the range of frequencies, transmitter-receiver separation, and measurement errors for the field data. DOIs were estimated at 2.0??0.5m depending on the soil conductivities. A 4-layer model, with varying thicknesses, was used to invert the ECa to maximize available information within the aquifer region for improved correlations with K. Results show improved correlation between K and the corresponding inverted EC at similar depths, underscoring the importance of inversion in using multi-frequency EMI data for hydrologic estimation. ?? 2011.

  1. Multi-frequency analysis of neutralino dark matter annihilations in the Coma cluster

    NASA Astrophysics Data System (ADS)

    Colafrancesco, S.; Profumo, S.; Ullio, P.

    2006-08-01

    We study the astrophysical implications of neutralino dark matter annihilations in galaxy clusters, with a specific application to the Coma cluster. We first address the determination of the dark halo models for Coma, starting from structure formation models and observational data, and we discuss in detail the role of sub-halos. We then perform a thorough analysis of the transport and diffusion properties of neutralino annihilation products, and investigate the resulting multi-frequency signals, from radio to gamma-ray frequencies. We also study other relevant astrophysical effects of neutralino annihilations, like the DM-induced Sunyaev-Zel'dovich effect and the intracluster gas heating. As for the particle physics setup, we adopt a two-fold approach, resorting both to model-independent bottom-up scenarios and to benchmark, GUT-motivated frameworks. We show that the Coma radio-halo data (the spectrum and the surface brightness) can be nicely fitted by the neutralino-induced signal for peculiar particle physics models and for magnetic field values, which we outline in detail. Fitting the radio data and moving to higher frequencies, we find that the multi-frequency spectral energy distributions are typically dim at EUV and X-ray frequencies (with respect to the data), but show a non-negligible gamma-ray emission, depending on the amplitude of the Coma magnetic field. A simultaneous fit to the radio, EUV and HXR data is not possible without violating the gamma-ray EGRET upper limit. The best-fit particle physics models yields substantial heating of the intracluster gas, but not sufficient energy injection as to explain the quenching of cooling flows in the innermost region of clusters. Due to the specific multi-frequency features of the DM-induced spectral energy distribution in Coma, we find that supersymmetric models can be significantly and optimally constrained either in the gamma-rays or at radio and microwave frequencies.

  2. Multi-frequency study of jet in HH 80-81

    NASA Astrophysics Data System (ADS)

    Pal, Sabyasachi; Chakrabarti, Sandip Kumar; Patra, Dusmanta

    2016-07-01

    We present multi-wavelength radio observation of the large radio jet from Herbig-Halo object HH 80-81 to study morphology of the jet in detail. We have combined the low frequency data of Giant Metrewave Radio Telescope (GMRT) with high frequency Jansky Very Large Array (JVLA) archival data for multi-frequency study. We have seen a highly collimated jet emitting from central source and the jet is collinear with the central source and HH 80-81. The spectrum of the source is studied in detail and we find the signature of spectral absorption towards the low frequency region.

  3. Multi-frequency acoustic metasurface for extraordinary reflection and sound focusing

    NASA Astrophysics Data System (ADS)

    Zhu, Yi-Fan; Fan, Xu-Dong; Liang, Bin; Yang, Jing; Yang, Jun; Yin, Lei-lei; Cheng, Jian-Chun

    2016-12-01

    We theoretically and numerically present the design of multi-frequency acoustic metasurfaces (MFAMs) with simple structure that can work not only at fundamental frequency, but also at their harmonic frequencies, which breaks the single frequency limitation in conventional resonance-based acoustic metasurfaces. The phase matched condition for achromatic manipulation is discussed. We demonstrate achromatic extraordinary reflection and sound focusing at 1700Hz, 3400Hz, and 5100Hz, that is, they have the same reflection direction and the same focusing position. This significant feature may pave the way to new type of acoustic metasurface, and will also extend acoustic metasurface applications to strongly nonlinear source cases.

  4. Fourier method for recovering acoustic sources from multi-frequency far-field data

    NASA Astrophysics Data System (ADS)

    Wang, Xianchao; Guo, Yukun; Zhang, Deyue; Liu, Hongyu

    2017-03-01

    We consider an inverse source problem of determining a source term in the Helmholtz equation from multi-frequency far-field measurements. Based on the Fourier series expansion, we develop a novel non-iterative reconstruction method for solving the problem. A promising feature of this method is that it utilizes the data from only a few observation directions for each frequency. Theoretical uniqueness and stability analysis are provided. Numerical experiments are conducted to illustrate the effectiveness and efficiency of the proposed method in both two and three dimensions.

  5. A Multi-frequency Beam-forming HF Radar for Tsunami Detection

    NASA Astrophysics Data System (ADS)

    Trizna, D. B.

    2007-05-01

    We discuss a new multi-frequency beam-forming HF radar design for robust detection and tracking of tsunami waves from 200 km distances, providing continuous coverage of the tsunami wave pattern after it impinges on the continental shelf. The method works by mapping ocean currents at long range using traditional HF radar method of radial Bragg line Doppler shift measurements. The tsunami is detected by anomalous spatial patterns of higher than normal Bragg-line shifts due to the large orbital wave of the series of tsunami wave crests as they impinge on the continental shelf. An approach using beam forming of 16 or 32 antenna elements provides an update every five minutes or less, while Direction-of-Arrival method systems using just a few antenna elements inherently require of the order of 30 to 60 minutes for a reliable current map. The multi-frequency radar provides a more robust capability than the single frequency HF radar for at least two reasons. First, because the HF channel user spectrum suffers diurnal variability in channel occupancy due to the ionosphere changing with time of day, low frequencies can become contaminated with user noise, so that maximum range for reliable detection not achieved. Under this condition, one would rely on quiet higher HF frequencies that lie above the Maximum Usable Frequency (MUF) for ionospheric reflection propagation. Alternatively, for daylight operation when low frequency utilization can be used to minimize surface wave propagation loss, the sea state might not be sufficiently active to allow long range coverage needed for reliable detection, due to the lack of ocean wave spectral energy at the Bragg-resonant wave frequency. Thus, single- frequency radars, operating in the 4-6 MHz range to minimize propagation losses to achieve long-range coverage, would suffer due to low wind conditions. The multi-frequency HF radar discussed here allows one to dynamically choose the optimum frequency from a set of 8 to 16, as allowed by

  6. Simultaneous multi-frequency topological edge modes between one-dimensional photonic crystals.

    PubMed

    Choi, Ka Hei; Ling, C W; Lee, K F; Tsang, Y H; Fung, Kin Hung

    2016-04-01

    We show theoretically that, in the limit of weak dispersion, one-dimensional binary centrosymmetric photonic crystals can support topological edge modes in all photonic bandgaps. By analyzing their bulk band topology, these "harmonic" topological edge modes can be designed in a way that they exist at all photonic bandgaps opened at the center of the Brillouin zone, at all gaps opened at the zone boundaries, or both. The results may suggest a new approach to achieve robust multi-frequency coupled modes for applications in nonlinear photonics, such as frequency upconversion.

  7. Computed Linear/Nonlinear Acoustic Response of a Cascade for Single/Multi Frequency Excitation

    NASA Technical Reports Server (NTRS)

    Nallasamy, M.; Hixon, R.; Sawyer, S.

    2004-01-01

    This paper examines mode generation and propagation characteristics of a 2-D cascade due to incident vortical disturbances using a time domain approach. Full nonlinear Euler equations are solved employing high order accurate spatial differencing and time marching techniques. The solutions show the generation and propagation of mode orders that are expected from theory. Single frequency excitations show linear response over a wide range of amplitudes. The response for multi-frequency excitations tend to become nonlinear due to interaction between frequencies and self interaction.

  8. Dynamic analysis of parametrically excited system under uncertainties and multi-frequency excitations

    NASA Astrophysics Data System (ADS)

    Wei, Sha; Han, Qinkai; Peng, Zhike; Chu, Fulei

    2016-05-01

    Some system parameters in mechanical systems are always uncertain due to uncertainties in geometric and material properties, lubrication condition and wear. For a more reasonable estimation of dynamic analysis of the parametrically excited system, the effect of uncertain parameters should be taken into account. This paper presents a new non-probabilistic analysis method for solving the dynamic responses of parametrically excited systems under uncertainties and multi-frequency excitations. By using the multi-dimensional harmonic balance method (MHBM) and the Chebyshev inclusion function (CIF), an interval multi-dimensional harmonic balance method (IMHBM) is obtained. To illustrate the accuracy of the proposed method, a time-varying geared system of wind turbine with different kinds of uncertainties is demonstrated. By comparing with the results of the scanning method, it is shown that the presented method is valid and effective for the parametrically excited system with uncertainties and multi-frequency excitations. The effects of some uncertain system parameters including uncertain mesh stiffnesses and uncertain bearing stiffnesses on the frequency responses of the system are also discussed in detail. It is shown that the dynamic responses of the system are insensitive to the uncertain mesh stiffness and bearing stiffnesses of the planetary gear stage. The uncertain bearing stiffnesses of the intermediate and high-speed stages will lead to relatively large uncertainties in the dynamic responses around resonant regions. It will provide valuable guidance for the optimal design and condition monitoring of wind turbine gearboxes.

  9. The Effect of Subcutaneous Fat on Electrical Impedance Myography: Electrode Configuration and Multi-Frequency Analyses

    PubMed Central

    Li, Le; Li, Xiaoyan; Hu, Huijing; Shin, Henry

    2016-01-01

    This study investigates the impact of the subcutaneous fat layer (SFL) thickness on localized electrical impedance myography (EIM), as well as the effects of different current electrodes, varying in distance and direction, on EIM output. Twenty-three healthy subjects underwent localized multi-frequency EIM on their biceps brachii muscles with a hand-held electrode array. The EIM measurements were recorded under three different configurations: wide (or outer) longitudinal configuration 6.8 cm, narrow (or inner) longitudinal configuration 4.5 cm, and narrow transverse configuration 4.5 cm. Ultrasound was applied to measure the SFL thickness. Coefficients of determination (R2) of three EIM variables (resistance, reactance, and phase) and SFL thickness were calculated. For the longitudinal configuration, the wide distance could reduce the effects of the subcutaneous fat when compared with the narrow distance, but a significant correlation still remained for all three EIM parameters. However, there was no significant correlation between SFL thickness and reactance in the transverse configuration (R2 = 0.0294, p = 0.434). Utilizing a ratio of 50kHz/100kHz phase was found to be able to help reduce the correlation with SFL thickness for all the three configurations. The findings indicate that the appropriate selection of the current electrode distance, direction and the multi-frequency phase ratio can reduce the impact of subcutaneous fat on EIM. These settings should be evaluated for future clinical studies using hand-held localized arrays to perform EIM. PMID:27227876

  10. Multi-frequency complex network from time series for uncovering oil-water flow structure

    PubMed Central

    Gao, Zhong-Ke; Yang, Yu-Xuan; Fang, Peng-Cheng; Jin, Ning-De; Xia, Cheng-Yi; Hu, Li-Dan

    2015-01-01

    Uncovering complex oil-water flow structure represents a challenge in diverse scientific disciplines. This challenge stimulates us to develop a new distributed conductance sensor for measuring local flow signals at different positions and then propose a novel approach based on multi-frequency complex network to uncover the flow structures from experimental multivariate measurements. In particular, based on the Fast Fourier transform, we demonstrate how to derive multi-frequency complex network from multivariate time series. We construct complex networks at different frequencies and then detect community structures. Our results indicate that the community structures faithfully represent the structural features of oil-water flow patterns. Furthermore, we investigate the network statistic at different frequencies for each derived network and find that the frequency clustering coefficient enables to uncover the evolution of flow patterns and yield deep insights into the formation of flow structures. Current results present a first step towards a network visualization of complex flow patterns from a community structure perspective. PMID:25649900

  11. The matched-phase coherent multi-frequency matched-field processor

    PubMed

    Orris; Nicholas; Perkins

    2000-05-01

    Coherent multi-frequency matched-field processing is investigated using a matched-phase coherent matched-field processor. Its main difference from previous coherent processors is that the relative phases of the Fourier components contained within the recorded signal are not assumed to be known a priori. Rather they are considered free parameters that can be determined using a global functional minimization algorithm. Additionally, this processor uses only the cross-frequency terms, making it less susceptible to the detrimental effects of ambient noise; in one example, this processor shows a five decibel improvement over a similar coherent processor. Along with its increased sensitivity with respect to the broadcast source levels, this coherent processor exhibits superior range resolution as compared with multi-frequency incoherent processors, due to the cross-frequency interference of the vertical eigenmodes. Within this work we explore the efficacy of the algorithms used to determine the relative phases along with the performance of the matched-phase coherent processor itself, performed within the context of data collected during an event from the SWellEx-96 experiment. Performance comparisons between this processor, an incoherent processor, and another coherent processor are demonstrated using this data set.

  12. A multi-frequency impedance analysing instrument for eddy current testing

    NASA Astrophysics Data System (ADS)

    Yin, W.; Dickinson, S. J.; Peyton, A. J.

    2006-02-01

    This paper presents the design of a high-performance multi-frequency impedance analysing instrument (MFIA) for eddy current testing which has been developed primarily for monitoring a steel production process using an inductive sensor. The system consists of a flexible multi-frequency waveform generator and a voltage/current measurement unit. The impedance of the sensor is obtained by cross-spectral analysis of the current and voltage signals. The system contains high-speed digital-to-analogue, analogue-to-digital converters and dual DSPs with one for control and interface and one dedicated to frequency-spectra analysis using fast Fourier transformation (FFT). The frequency span of the signal that can be analysed ranges from 1 kHz to 8 MHz. The system also employs a high-speed serial port interface (USB) to communicate with a personal computer (PC) and to allow for fast transmission of data and control commands. Overall, the system is capable of delivering over 250 impedance spectra per second. Although the instrument has been developed mainly for use with an inductive sensor, the system is not restricted to inductive measurement. The flexibility of the design architecture is demonstrated with capacitive and resistive measurements by using appropriate input circuitry. Issues relating to optimizing the phase of the spectra components in the excitation waveform are also discussed.

  13. PULSAR TIMING ERRORS FROM ASYNCHRONOUS MULTI-FREQUENCY SAMPLING OF DISPERSION MEASURE VARIATIONS

    SciTech Connect

    Lam, M. T.; Cordes, J. M.; Chatterjee, S.; Dolch, T.

    2015-03-10

    Free electrons in the interstellar medium cause frequency-dependent delays in pulse arrival times due to both scattering and dispersion. Multi-frequency measurements are used to estimate and remove dispersion delays. In this paper, we focus on the effect of any non-simultaneity of multi-frequency observations on dispersive delay estimation and removal. Interstellar density variations combined with changes in the line of sight from pulsar and observer motions cause dispersion measure (DM) variations with an approximately power-law power spectrum, augmented in some cases by linear trends. We simulate time series, estimate the magnitude and statistical properties of timing errors that result from non-simultaneous observations, and derive prescriptions for data acquisition that are needed in order to achieve a specified timing precision. For nearby, highly stable pulsars, measurements need to be simultaneous to within about one day in order for the timing error from asynchronous DM correction to be less than about 10 ns. We discuss how timing precision improves when increasing the number of dual-frequency observations used in DM estimation for a given epoch. For a Kolmogorov wavenumber spectrum, we find about a factor of two improvement in precision timing when increasing from two to three observations but diminishing returns thereafter.

  14. Research of frequency modulation to amplitude modulation with multi-frequency modulation

    NASA Astrophysics Data System (ADS)

    Zhou, Yuliang; Zhan, Sui; Geng, Yuanchao; Liu, Lanqin; Xu, Lixin; Ming, Hai

    2013-12-01

    For better performance of laser coupling in inertial confinement fusion (ICF), beam shaping of the focus spot is required. Among all the beam smoothing methods, the multi frequency modulation smoothing by spectral dispersion (MultiFM-SSD) proposed by LLE has the advantages of the faster smoothing and better operability. Strong frequency modulation to amplitude modulation conversion(FM-to-AM) will take place because of the complex spectrum imposed by the multi frequency modulators applied in the Multi FM-SSD method. The FM-to-AM effect is studied with numerical simulation including the polarization mode dispersion and group velocity dispersion. The results reveal that the modulation frequencies and bandwidths of multi modulators will influence the contrast degree of the FM-to-AM effect. The compensation of the FM-to-AM with arbitrary waveform generator (AWG) is also numerically simulated. The FM-to-AM effect is effectively suppressed, i.e. the non-uniformity of the pulse decreases substantially, by applying multiple intensity and phase compensation (the compensation function is obtained via G-S algorithm).

  15. Utilisation of multi-frequency VEMPs improves diagnostic accuracy for Meniere's disease.

    PubMed

    Maxwell, Rebecca; Jerin, Claudia; Gürkov, Robert

    2017-01-01

    To determine whether vestibular evoked myogenic potential (VEMP) measurements that combine the VEMP 500/1000 Hz frequency tuning ratio and the inter-aural asymmetry ratio can reliably detect unilateral Meniere's disease ears as compared to healthy controls. Forty-two consecutive patients with certain unilateral Meniere's disease (as confirmed using a locally enhanced inner ear MRI (LEIM)) were assessed. Cervical vestibular evoked myogenic potentials (cVEMP) and ocular vestibular evoked myogenic potentials (oVEMP) were recorded at 500 and 1000 Hz. The VEMP amplitudes, asymmetry ratios, and the 500/1000 Hz amplitude ratios were compared with those of 21 age-matched healthy controls. A multi-frequency VEMPs score that combined: (1) the cVEMP 500/1000 Hz amplitude ratio, (2) the oVEMP 500/1000 Hz amplitude ratio, (3) the 500 Hz cVEMP asymmetry ratio, (4) the 1000 Hz cVEMP asymmetry ratio, produced a ROC curve with an area under the curve (AUC) of 0.814. The inclusion of audiology data further improved the result to 0.906. This score can be used to discriminate with a good degree of clinical accuracy between Meniere's ears (unilateral) and those of healthy controls. Multi-frequency VEMP analysis offers a simple, cost-effective solution to the diagnostic difficulties presented by Meniere's disease.

  16. Advanced multi-frequency radar: Design, preliminary measurements and particle size distribution retrieval

    NASA Astrophysics Data System (ADS)

    Majurec, Ninoslav

    In the spring of 2001 the Microwave Remote Sensing Laboratory (MIRSL) at the University of Massachusetts began the development of an advanced Multi-Frequency Radar (AMFR) system for studying clouds and precipitation. This mobile radar was designed to consist of three polarimetric Doppler subsystems operating at Ku-band (13.4 GHz), Ka-band (35.6 GHz) and W-band (94.92 GHz). This combination of frequency bands allows a measurement of a wide range of atmospheric targets ranging from weakly reflecting clouds to strong precipitation. The antenna beamwidths at each frequency were intentionally matched, ensuring consistent sampling volume. Multi-frequency radar remote sensing techniques are not widely used because few multi-frequency radars are available to the science community. One exception is the 33 GHz/95 GHz UMass Cloud Profiling Radar System (CPRS), which AMFR is intended to replace. AMFR's multi-parameter capabilities are designed for characterizing the complex microphysics of layer clouds and precipitation processes in winter storms. AMFR will also play an important role in developing algorithms and validating measurements for an upcoming generation of space-borne radars. The frequency bands selected for AMFR match those of several sensors that have been deployed or are under development. These include the Japanese Aerospace Exploration Agencies (JAXA's) Tropical Rainfall Measuring Mission (TRMM) satellite Ku-band (13 GHz) radar, the CloudSat W-band (95 GHz) radar, and the Global Precipitation Mission (GPM) satellite radars at Ku-band and Ka-band. This dissertation describes the AMFR hardware design and development. Compared to CPRS, the addition of one extra frequency band (Ku) will extend AMFR's measurement capabilities towards the larger particle sizes (precipitation). AMFR's design is based around high-power klystron amplifiers. This ensures complete coherency (CPRS uses magnetrons and coherent-on-receive technique). The partial loss in sensitivity due to

  17. Optimizing an Actuator Array for the Control of Multi-Frequency Noise in Aircraft Interiors

    NASA Technical Reports Server (NTRS)

    Palumbo, D. L.; Padula, S. L.

    1997-01-01

    Techniques developed for selecting an optimized actuator array for interior noise reduction at a single frequency are extended to the multi-frequency case. Transfer functions for 64 actuators were obtained at 5 frequencies from ground testing the rear section of a fully trimmed DC-9 fuselage. A single loudspeaker facing the left side of the aircraft was the primary source. A combinatorial search procedure (tabu search) was employed to find optimum actuator subsets of from 2 to 16 actuators. Noise reduction predictions derived from the transfer functions were used as a basis for evaluating actuator subsets during optimization. Results indicate that it is necessary to constrain actuator forces during optimization. Unconstrained optimizations selected actuators which require unrealistically large forces. Two methods of constraint are evaluated. It is shown that a fast, but approximate, method yields results equivalent to an accurate, but computationally expensive, method.

  18. Composite Characterization Using Laser Doppler Vibrometry and Multi-Frequency Wavenumber Analysis

    NASA Technical Reports Server (NTRS)

    Juarez, Peter; Leckey, Cara

    2015-01-01

    NASA has recognized the need for better characterization of composite materials to support advances in aeronautics and the next generation of space exploration vehicles. An area of related research is the evaluation of impact induced delaminations. Presented is a non-contact method of measuring the ply depth of impact delamination damage in a composite through use of a Scanning Laser Doppler Vibrometer (SLDV), multi-frequency wavenumber analysis, and a wavenumber-ply correlation algorithm. A single acquisition of a chirp excited lamb wavefield in an impacted composite is post-processed into a numerous single frequency excitation wavefields through a deconvolution process. A spatially windowed wavenumber analysis then extracts local wavenumbers from the wavefield, which are then correlated to theoretical dispersion curves for ply depth determination. SLDV based methods to characterize as-manufactured composite variation using wavefield analysis will also be discussed.

  19. Classification and Monitoring of Salt Marsh Habitats with Multi-Polarimetric and Multi-Frequency SAR

    NASA Astrophysics Data System (ADS)

    van Beijma, Sybrand; Comber, Alexis; Lamb, Alistair; Brown, Sarah

    2013-08-01

    Within GMES there is much interest in the ability of remote sensing technology to deliver operational solutions to many areas of life including environmental management. This paper describes research focused on the application for Earth Observation for Integrated Coastal Zone Management. The main topic of this research is to explore to which extent salt marsh habitats from can be identified from SAR remotely sensed data. Multi-frequency, multi-polarimetric SAR images from airborne (S- and X-Band quad-polarimetric from the Astrium airborne SAR Demonstrator) is used to examine salt marsh habitat classification potential in the Llanrhidian salt marshes in South Wales, UK. This is achieved by characterizing their botanical and structural composition, flooding regimes as well as fluctuations in soil moisture. Different SAR features as backscatter coefficient, band ratios and polarimetric decomposition are extracted.

  20. Design and characterization of a multi-frequency bioimpedance measurement prototype

    NASA Astrophysics Data System (ADS)

    Mattia Neto, O. E.; Porto, R. W.; Aya, J. C. C.

    2012-12-01

    A multi-frequency bioimpedance measurement prototype is proposed, validated and characterized. It consists of an Improved Howland Current Source controlled by voltage, a load voltage sensing scheme through a discrete 3-opamp instrumentation amplifier, a phase and quadrature demodulation setup through analog multipliers, and digitization and processing of the signals using a digital benchtop multimeter. The electrical characterization of the measurement channel was done for resistive loads only, on four different circuits. Measurements were made on 10 frequencies, from 100 kHz to 1 MHz, with 10 load resistances, from 100 Ω to 1 kΩ, to obtain linearity, absolute error and frequency response. The best performance among the four circuits was a maximum absolute error of 5.55 %, and -1.93 % of load current variation at the worst case scenario.

  1. Three-dimensional ground penetrating radar imaging using multi-frequency diffraction tomography

    SciTech Connect

    Mast, J.E.; Johansson, E.M.

    1994-11-15

    In this talk we present results from a three-dimensional image reconstruction algorithm for impulse radar operating in monostatic pule-echo mode. The application of interest to us is the nondestructive evaluation of civil structures such as bridge decks. We use a multi-frequency diffraction tomography imaging technique in which coherent backward propagations of the received reflected wavefield form a spatial image of the scattering interfaces within the region of interest. This imaging technique provides high-resolution range and azimuthal visualization of the subsurface region. We incorporate the ability to image in planarly layered conductive media and apply the algorithm to experimental data from an offset radar system in which the radar antenna is not directly coupled to the surface of the region. We present a rendering in three-dimensions of the resulting image data which provides high-detail visualization.

  2. Three-dimensional ground penetrating radar imaging using multi-frequency diffraction tomography

    SciTech Connect

    Mast, J.E.; Johansson, E.M.

    1994-07-01

    In this paper we present results from a three-dimensional image reconstruction algorithm for impulse radar operating in monostatic pulse-echo mode. The application of interest to us is the nondestructive evaluation of civil structures such as bridge decks. We use a multi-frequency diffraction tomography imaging technique in which coherent backward propagations of the received reflected wavefield form a spatial image of the scattering interfaces within the region of interest. This imaging technique provides high-resolution range and azimuthal visualization of the subsurface region. We incorporate the ability to image in planarly layered conductive media and apply the algorithm to experimental data from an offset radar system in which the radar antenna is not directly coupled to the surface of the region. We present a rendering in three-dimensions of the resulting image data which provides high-detail visualization.

  3. Multi-frequency local wavenumber analysis and ply correlation of delamination damage.

    PubMed

    Juarez, Peter D; Leckey, Cara A C

    2015-09-01

    Wavenumber domain analysis through use of scanning laser Doppler vibrometry has been shown to be effective for non-contact inspection of damage in composites. Qualitative and semi-quantitative local wavenumber analysis of realistic delamination damage and quantitative analysis of idealized damage scenarios (Teflon inserts) have been performed previously in the literature. This paper presents a new methodology based on multi-frequency local wavenumber analysis for quantitative assessment of multi-ply delamination damage in carbon fiber reinforced polymer (CFRP) composite specimens. The methodology is presented and applied to a real world damage scenario (impact damage in an aerospace CFRP composite). The methodology yields delamination size and also correlates local wavenumber results from multiple excitation frequencies to theoretical dispersion curves in order to robustly determine the delamination ply depth. Results from the wavenumber based technique are validated against a traditional nondestructive evaluation method.

  4. Multi-Frequency Investigation into Scattering from Vegetation over the Growth Cycle

    NASA Technical Reports Server (NTRS)

    Lang, R. H.; Kurum, M.; O'Neill, P. E.; Joseph, A. T.; Deshpande, M. D.; Cosh, M. H.

    2016-01-01

    In this investigation, we aim to collect and use time-series multi-frequency microwave data over winter wheat during entire growth cycle to characterize vegetation dynamics and to quantify its effects on soil moisture retrievals. We plan to incorporate C-band radar and VHF receiver within the existing L-band radarradiometer system called ComRAD (SMAPs ground based simulator). With C-bands ability to sense vegetation details and VHFs root-zone soil moisture within ComRADs footprint, we will be able to test our discrete scatterer vegetation models and parameters at various surface conditions. The purpose of this study is to determine optical depth and effective scattering albedo of vegetation of a given type (i.e. winter wheat) at various stages of growth that are need to refine soil moisture retrieval algorithms being developed for the SMAP mission.

  5. Recovering Inner Slices of Layered Translucent Objects by Multi-Frequency Illumination.

    PubMed

    Tanaka, Kenichiro; Mukaigawa, Yasuhiro; Kubo, Hiroyuki; Matsushita, Yasuyuki; Yagi, Yasushi

    2017-04-01

    This paper describes a method for recovering appearance of inner slices of translucent objects. The appearance of a layered translucent object is the summed appearance of all layers, where each layer is blurred by a depth-dependent point spread function (PSF). By exploiting the difference of low-pass characteristics of depth-dependent PSFs, we develop a multi-frequency illumination method for obtaining the appearance of individual inner slices. Specifically, by observing the target object with varying the spatial frequency of checker-pattern illumination, our method recovers the appearance of inner slices via computation. We study the effect of non-uniform transmission due to inhomogeneity of translucent objects and develop a method for recovering clear inner slices based on the pixel-wise PSF estimates under the assumption of spatial smoothness of inner slice appearances. We quantitatively evaluate the accuracy of the proposed method by simulations and qualitatively show faithful recovery using real-world scenes.

  6. SU-E-I-52: Validation of Multi-Frequency Electrical Impedance Tomography Using Computed Tomography

    SciTech Connect

    Kohli, K; Liu, F; Krishnan, K

    2014-06-01

    Purpose: Multi-frequency EIT has been reported to be a potential tool in distinguishing a tissue anomaly from background. In this study, we investigate the feasibility of acquiring functional information by comparing multi-frequency EIT images in reference to the structural information from the CT image through fusion. Methods: EIT data was acquired from a slice of winter melon using sixteen electrodes around the phantom, injecting a current of 0.4mA at 100, 66, 24.8 and 9.9 kHz. Differential EIT images were generated by considering different combinations of pair frequencies, one serving as reference data and the other as test data. The experiment was repeated after creating an anomaly in the form of an off-centered cavity of diameter 4.5 cm inside the melon. All EIT images were reconstructed using Electrical Impedance Tomography and Diffuse Optical Tomography Reconstruction Software (EIDORS) package in 2-D differential imaging mode using one-step Gaussian Newton minimization solver. CT image of the melon was obtained using a Phillips CT Scanner. A segmented binary mask image was generated based on the reference electrode position and the CT image to define the regions of interest. The region selected by the user was fused with the CT image through logical indexing. Results: Differential images based on the reference and test signal frequencies were reconstructed from EIT data. Result illustrated distinct structural inhomogeneity in seeded region compared to fruit flesh. The seeded region was seen as a higherimpedance region if the test frequency was lower than the base frequency in the differential EIT reconstruction. When the test frequency was higher than the base frequency, the signal experienced less electrical impedance in the seeded region during the EIT data acquisition. Conclusion: Frequency-based differential EIT imaging can be explored to provide additional functional information along with structural information from CT for identifying different tissues.

  7. Design and verification of wide-band, simultaneous, multi-frequency, tuning circuits for large moment transmitter loops

    NASA Astrophysics Data System (ADS)

    Dvorak, Steven L.; Sternberg, Ben K.; Feng, Wanjie

    2017-03-01

    In this paper we discuss the design and verification of wide-band, multi-frequency, tuning circuits for large-moment Transmitter (TX) loops. Since these multi-frequency, tuned-TX loops allow for the simultaneous transmission of multiple frequencies at high-current levels, they are ideally suited for frequency-domain geophysical systems that collect data while moving, such as helicopter mounted systems. Furthermore, since multi-frequency tuners use the same TX loop for all frequencies, instead of using separate tuned-TX loops for each frequency, they allow for the use of larger moment TX loops. In this paper we discuss the design and simulation of one- and three-frequency tuned TX loops and then present measurement results for a three-frequency, tuned-TX loop.

  8. Perceptual and Attentional Influences on Continuous 2:1 and 3:2 Multi-Frequency Bimanual Coordination

    ERIC Educational Resources Information Center

    Kovacs, Attila J.; Buchanan, John J.; Shea, Charles H.

    2010-01-01

    Two experiments were conducted to determine if multi-frequency (2:1 and 3:2) coordination between the limbs is enhanced when integrated feedback is provided in the form of Lissajous plots, attention demands are reduced, and attempts to consciously coordinate the limbs are not encouraged. To determine the influence of vision of the limbs, covered…

  9. [Study on spectral gain characterization of FWM processes with multi-frequency pumps in photonic crystal fiber].

    PubMed

    Hui, Zhan-Qiang

    2011-10-01

    Spectral gain induced by four-wave-mixing with multi-frequency pump was investigated by exploiting the data signal and continue lights co-propagation in dispersion flattened high nonlinear photonic crystal fiber (PCF). The effects of wavelength drift of pump lights, polarization state of orthogonal or parallel of pump lights, polarization mismatch of signal light versus orthogonal pump lights, total power of signal and probe light on the spectrum gain were analyzed. The results show that good FWM gain effects with multi-frequency pump can be obtained in 36.4 nm wavelength range when power ratio of pump to probe light is appropriate and with identical polarization. Furthermore, the gain of FWM with multi-frequency pump is very sensitive to polarization fluctuation and the different idle waves obtain different gain with the variation in signal polarization state. Moreover, the impact of pump numbers was investigated. The obtained results would be helpful for further research on ultrahigh-speed all optical signal processing devices exploiting the FWM with multi-frequency pump in PCF for future photonics network.

  10. PAGaN I: Multi-Frequency Polarimetry of AGN Jets with KVN

    NASA Astrophysics Data System (ADS)

    Kim, Jae-Young; Trippe, Sascha; Sohn, Bong Won; Oh, Junghwan; Park, Jong-Ho; Lee, Sang-Sung; Lee, Taeseok; Kim, Daewon

    2015-10-01

    Active Galactic Nuclei (AGN) with bright radio jets offer the opportunity to study the structure of and physical conditions in relativistic outflows. For such studies, multi-frequency polarimetric very long baseline interferometric (VLBI) observations are important as they directly probe particle densities, magnetic field geometries, and several other parameters. We present results from first-epoch data obtained by the Korean VLBI Network (KVN) within the frame of the Plasma Physics of Active Galactic Nuclei (PAGaN) project. We observed seven radio-bright nearby AGN at frequencies of 22, 43, 86, and 129 GHz in dual polarization mode. Our observations constrain apparent brightness temperatures of jet components and radio cores in our sample to >10^{8.01} K and >10^{9.86} K, respectively. Degrees of linear polarization m_{L} are relatively low overall: less than 10%. This indicates suppression of polarization by strong turbulence in the jets. We found an exceptionally high degree of polarization in a jet component of BL Lac at 43 GHz, with m_{L} ˜ 40%. Assuming a transverse shock front propagating downstream along the jet, the shock front being almost parallel to the line of sight can explain the high degree of polarization.

  11. Extraction of Benthic Fauna Habitat in Tidal Flats Using Multi-Frequency Polarimetric SAR Data

    NASA Astrophysics Data System (ADS)

    Choe, Byung-Hun; Kim, Duk-Jin; Hwang, Ji-Hwan; Moon, Wooil M.

    2011-03-01

    Benthic faunas form a relatively rough surface structure in tidal flats by their unique surface structure or their survival activities. In particular, oyster reefs are exposed and distributed intensively on those tidal flats at low tide. In this study, we investigated the microwave scattering signatures occurred by the regional distribution of oysters in tidal flats, applying polarimetric analysis techniques to fully polarimetric RADARSAT-2 (C-band) and ALOS PALSAR (L-band) data. Tidal flats of Jebu Island in the western coastal region of the Korean peninsula were selected for the investigation. The scattering mechanisms in tidal flats were analyzed by Freeman-Durden target decomposition and the target depolarization effects were quantitatively measured using the cross- polarized ratio, co-polarized correlation coefficient, and phase difference between HH and VV. From C-band SAR data, we observed strong volume (or multiple) scattering and depolarization effects in the oyster reefs, while only surface scattering was dominant in mud flat areas. These scattering signatures were also verified in-situ measurenments using a ground-based polarimetric scatterometer system. However, no difference was observed between the scattering signatures of oyster reefs and mud flat areas from L-band data, which have a relatively longer wavelength. In conclusion, this study suggests that multi-frequency polarimetric SAR measurements can be used to detect the naturally distributed oysters in tidal flats.

  12. The study of multi-frequency scattering of 10 radio pulsars

    NASA Astrophysics Data System (ADS)

    Lewandowski, Wojciech; Rożko, Karolina; Kijak, Jarosław; Bhattacharyya, Bhaswati; Roy, Jayanta

    2015-12-01

    We present the results of the multi-frequency scatter time measurements for 10 radio pulsars that were relatively less studied in this regard. The observations were performed using the Giant Metrewave Radio Telescope at the observing frequencies of 150, 235, 325, 610 and 1060 MHz. The data we collected, in conjunction with the results from other frequencies published earlier, allowed us to estimate the scatter time frequency scaling indices for eight of these sources. For PSR J1852-0635, it became evident that its profile undergoes a strong evolution with frequency, which makes the scatter time measurements difficult to perform, and for PSR J1835-1020 we were able to obtain reliable pulse broadening estimates at only two frequencies. We used the eight frequency scaling indices to estimate both: the electron density fluctuation strengths along the respective lines of sight and the standardized amount of scattering at the frequency of 1 GHz. Combining the new data with the results published earlier by Lewandowski et al., we revisited the scaling index versus the dispersion measure (DM) relation, and similarly to some of the earlier studies, we show that the average value of the scaling index deviates from the theoretical predictions for large-DM pulsars; however, it reaches the magnitude claimed by Löhmer et al. only for pulsars with very large DMs (>650 pc cm-3). We also investigated the dependence of the scattering strength indicators on the pulsar distance, DM and the position of the source in the Milky Way Galaxy.

  13. A frequency based constraint for a multi-frequency linear sampling method

    NASA Astrophysics Data System (ADS)

    Alqadah, H. F.; Valdivia, N.

    2013-09-01

    The linear sampling method (LSM) has become a well established non-iterative technique for a variety of inverse scattering problems. The method offers a number of advantages over competing inverse scattering methods, mainly it is based on solving a linear problem while being able to account for multi-path effects. Unfortunately under the current framework the method is only effective when using a large number of multi-static data, and therefore may be impractical for many imaging applications. While primarily developed under a single frequency framework, recently the extension of the method to multi-banded data sets has been considered. It is known in general that the availability of multi-frequency data should compensate for reduced spatial diversity, but it is not clear how this can be accomplished for the LSM. In this work we take a step in this direction by considering a frequency based partial variation approach. We first establish that on bands absent of any corresponding Dirichlet eigenvalues the Herglotz density exhibits bounded variation. We then consider a regularization method incorporating this prior knowledge. The proposed approach exhibited a good estimate of the unknown Dirichlet eigenvalues of the obstacle in question when using reduced data. This observation also correlated with higher quality 3D reconstructions.

  14. Array processing for RFID tag localization exploiting multi-frequency signals

    NASA Astrophysics Data System (ADS)

    Zhang, Yimin; Li, Xin; Amin, Moeness G.

    2009-05-01

    RFID is an increasingly valuable business and technology tool for electronically identifying, locating, and tracking products, assets, and personnel. As a result, precise positioning and tracking of RFID tags and readers have received considerable attention from both academic and industrial communities. Finding the position of RFID tags is considered an important task in various real-time locating systems (RTLS). As such, numerous RFID localization products have been developed for various applications. The majority of RFID positioning systems is based on the fusion of pieces of relevant information, such as the range and the direction-of-arrival (DOA). For example, trilateration can determine the tag position by using the range information of the tag estimated from three or more spatially separated reader antennas. Triangulation is another method to locate RFID tags that use the direction-of-arrival (DOA) information estimated at multiple spatially separated locations. The RFID tag positions can also be determined through hybrid techniques that combine the range and DOA information. The focus of this paper to study the design and performance of the localization of passive RFID tags using array processing techniques in a multipath environment, and exploiting multi-frequency CW signals. The latter are used to decorrelate the coherent multipath signals for effective DOA estimation and for the purpose of accurate range estimation. Accordingly, the spatial and frequency dimensionalities are fully utilized for robust and accurate positioning of RFID tags.

  15. A multi-frequency EIT system design based on telecommunication signal processors.

    PubMed

    Robitaille, Nicolas; Guardo, Robert; Maurice, Isabelle; Hartinger, Alzbeta E; Gagnon, Hervé

    2009-06-01

    A multi-frequency electrical impedance tomography system for cardiopulmonary monitoring has been designed with specialized digital signal processors developed primarily for the telecommunications sector. The system consists of two modules: a scan-head and a base-station. The scan-head, located close to the patient's torso, contains front-end circuits for measuring transfer impedance with a 16-electrode array. The base-station, placed at the bedside, comprises 16 direct digital synthesizers, 32 digital down-converters, digital circuits to control the data acquisition sequence and a USB-2.0 microcontroller. At every step of the scan sequence, the system simultaneously measures four complex variables at eight frequencies. These variables are the potential difference between the selected pair of sense electrodes, the currents applied by the source and sink electrodes, and the current flowing through the ground electrode. Frequencies are programmable from 10 kHz to 2 MHz with a resolution of 2 mHz. Characterization tests were performed with a precision mesh phantom connected to the scan-head. For a 5 Hz frame rate, the mean signal-to-noise ratio and accuracy are, respectively, 43 dB and 95.4% for eight frequencies logarithmically spaced from 70 to 950 kHz. In vitro and in vivo time-difference images have been reconstructed.

  16. The Galactic Center Radio Arc: A Multi-Frequency Spectro-Polarimetric Study

    NASA Astrophysics Data System (ADS)

    Toomey, James Edward; Lang, Cornelia C.; Ludovici, Dominic

    2014-06-01

    Despite the Radio Arc non-thermal filaments (NTFs) being discovered 30 years ago, their origin remain poorly understood. The Radio Arc NTFs have an unusually flat spectrum in the centimeter to millimeter spectrum with a predicted, though poorly constrained, turn-over between 30- 200 GHz. With the recently upgraded wide-band capabilities of the VLA, we conducted a multi-frequency spectro-polarimetric study of the Radio Arc region. With observations at a set of low radio frequencies (continuous coverage over 2-6 GHz & 10-12 GHz), we imaged both the total and polarized intensity distributions at high angular resolution (≤ 1”). Presented here are the preliminary results from four observations spanning May 2013 to February 2014 using the DnC, CnB, B & BnA array configurations. This study has produced the deepest continuum intensity images of the Radio Arc region to date, with a sensitivity an order of magnitude greater than previous surveys, and resulted in the detection of new structure and compact emission sources. These observations will serve as a pilot polarization study for larger, more complete polarimetric surveys of the Galactic center region.

  17. The galactic center radio arc: A multi-frequency polarimetric study

    NASA Astrophysics Data System (ADS)

    Toomey, James, IV

    Despite the Radio Arc non-thermal filaments (NTFs) being discovered 30 years ago, their origin remain poorly understood. The Radio Arc NTFs have an unusually flat spectrum in the centimeter to millimeter spectrum with a predicted, though poorly constrained, turn-over between 30-200 GHz. With the recently upgraded wide-band capabilities of the VLA, we conducted a multi-frequency polarimetric study of the Radio Arc region. With observations at a set of low radio frequencies (continuous coverage over 2-6 GHz & 10-12 GHz), we imaged both the total and polarized intensity distributions at high angular resolution (< 1''). Presented here are the preliminary results from four observations spanning May 2013 to February 2014 using the DnC, CnB, B & BnA array configurations. This study has produced the deepest continuum intensity images of the Radio Arc region to date, with a sensitivity an order of magnitude greater than previous surveys, and resulted in the detection of new structure and compact emission sources. These observations will serve as a pilot polarization study for larger, more complete polarimetric surveys of the Galactic center region.

  18. Multi-frequency electron paramagnetic resonance study of irradiated human finger phalanxes

    NASA Astrophysics Data System (ADS)

    Zdravkova, M.; Vanhaelewyn, G.; Callens, F.; Gallez, B.; Debuyst, R.

    2005-10-01

    Electron paramagnetic resonance (EPR) is often used in dosimetry using biological samples such as teeth and bones. It is generally assumed that the radicals, formed after irradiation, are similar in both tissues as the mineral part of bone and tooth is carbonated hydroxyapatite. However, there is a lack of experimental evidence to support this assumption. The aim of the present study was to contribute to that field by studying powder and block samples of human finger phalanxes that were irradiated and analyzed by multi-frequency EPR. The results obtained from bones are different from the ones obtained in enamel by several respects: the ordering of the apatite crystallites is much smaller in bone, complicating the assignment of the observed CO 2- radicals to a specific location, and one type of CO 33- radical was only found in enamel. Moreover, a major difference was found in the non-CO 2- and non-CO 33- signals. The elucidation of the nature of these native signals (in bone and tooth enamel) still represents a big challenge.

  19. Data Acquisition System for Multi-Frequency Radar Flight Operations Preparation

    NASA Technical Reports Server (NTRS)

    Leachman, Jonathan

    2010-01-01

    A three-channel data acquisition system was developed for the NASA Multi-Frequency Radar (MFR) system. The system is based on a commercial-off-the-shelf (COTS) industrial PC (personal computer) and two dual-channel 14-bit digital receiver cards. The decimated complex envelope representations of the three radar signals are passed to the host PC via the PCI bus, and then processed in parallel by multiple cores of the PC CPU (central processing unit). The innovation is this parallelization of the radar data processing using multiple cores of a standard COTS multi-core CPU. The data processing portion of the data acquisition software was built using autonomous program modules or threads, which can run simultaneously on different cores. A master program module calculates the optimal number of processing threads, launches them, and continually supplies each with data. The benefit of this new parallel software architecture is that COTS PCs can be used to implement increasingly complex processing algorithms on an increasing number of radar range gates and data rates. As new PCs become available with higher numbers of CPU cores, the software will automatically utilize the additional computational capacity.

  20. Altered Effective Connectivity Network in Childhood Absence Epilepsy: A Multi-frequency MEG Study.

    PubMed

    Wu, Caiyun; Xiang, Jing; Jiang, Wenwen; Huang, Shuyang; Gao, Yuan; Tang, Lu; Zhou, Yuchen; Wu, Di; Chen, Qiqi; Hu, Zheng; Wang, Xiaoshan

    2017-03-12

    Using multi-frequency magnetoencephalography (MEG) data, we investigated whether the effective connectivity (EC) network of patients with childhood absence epilepsy (CAE) is altered during the inter-ictal period in comparison with healthy controls. MEG data from 13 untreated CAE patients and 10 healthy controls were recorded. Correlation analysis and Granger causality analysis were used to construct an EC network at the source level in eight frequency bands. Alterations in the spatial pattern and topology of the network in CAE were investigated by comparing the patients with the controls. The network pattern was altered mainly in 1-4 Hz, showing strong connections within the frontal cortex and weak connections in the anterior-posterior pathways. The EC involving the precuneus/posterior cingulate cortex (PC/PCC) significantly decreased in low-frequency bands. In addition, the parameters of graph theory were significantly altered in several low- and high-frequency bands. CAE patients display frequency-specific abnormalities in the network pattern even during the inter-ictal period, and the frontal cortex and PC/PCC might play crucial roles in the pathophysiology of CAE. The EC network of CAE patients was over-connective and random during the inter-ictal period. This study is the first to reveal the frequency-specific alteration in the EC network during the inter-ictal period in CAE patients. Multiple-frequency MEG data are useful in investigating the pathophysiology of CAE, which can serve as new biomarkers of this disorder.

  1. Noise-resilient multi-frequency surface sensor for nuclear quadrupole resonance.

    PubMed

    Peshkovsky, A S; Cattena, C J; Cerioni, L M; Osán, T M; Forguez, J G; Peresson, W J; Pusiol, D J

    2008-10-01

    A planar nuclear quadrupole resonance (NQR) sensor has been developed. The sensor is resilient to environmental noise and is capable of simultaneous independent multi-frequency operation. The device was constructed as an open multimodal birdcage structure, in which the higher modes, generally not used in magnetic resonance, are utilized for NQR detection. These modes have smooth distributions of the amplitudes of the corresponding radiofrequency magnetic fields everywhere along the sensor's surface. The phases of the fields, on the other hand, are cyclically shifted across the sensor's surface. Noise signals coming from distant sources, therefore, induce equal-magnitude cyclically phase-shifted currents in different parts of the sensor. When such cyclically phase-shifted currents arrive at the mode connection point, they destructively interfere with each other and are cancelled out. NQR signals of polycrystalline or disordered substances, however, are efficiently detected by these modes because they are insensitive to the phases of the excitation/detection. No blind spots exist along the sensor's surface. The sensor can be used for simultaneous detection of one or more substances in locations with environmental noise.

  2. Performance evaluation of KHU Mark2 parallel multi-frequency EIT system

    NASA Astrophysics Data System (ADS)

    Kim, D. Y.; Wi, H.; Yoo, P. J.; Oh, T. I.; Woo, E. J.

    2010-04-01

    We describe a new parallel multi-frequency EIT system, KHU Mark2. It is based on the impedance measurement module (IMM), which comprises a single-ended constant current source and a voltmeter. Each IMM has an FPGA for its independent operations including current injection at multiple frequencies, voltage amplification, ADC, digital phase-sensitive demodulation and intra-networking with a main controller of the system. The main controller is based on a DSP and an isolated USB for its connection to a PC. There is an FPGA-based intranet controller, which arbitrates data exchanges between the DSP and multiple IMMs. Unlike its precursor, KHU Mark1, it is a true parallel system with no switching for both current injection and voltage sensing. The small size of the IMM results in a much reduced dimension of a multi-channel system. The KHU Mark2 can be assembled in any channels between 1 and 64. Depending on a chosen application, we custom design an analog backplane that interfaces multiple IMMs with electrodes. Special care was given to the system calibration to maximize its performance in frequency-difference EIT imaging as well as time-difference. Flexibility is the key improvement factor compared with the KHU Mark1. The new system can accommodate any current injection and voltage sensing protocol including the optimal injection current pattern. Reduced size and new internal architecture significantly improved mechanical as well as electrical stability of the system.

  3. Impurities and electron spin relaxations in nanodiamonds studied by multi-frequency electron spin resonance

    NASA Astrophysics Data System (ADS)

    Cho, Franklin; Takahashi, Susumu

    2014-03-01

    Nano-sized diamond or nanodiamond is a fascinating material for potential applications of fluorescence imaging and magnetic sensing of biological systems via nitrogen-vacancy defect centers in diamonds. Sensitivity of the magnetic sensing strongly depends on coupling to surrounding environmental noises, thus understanding of the environment is critical to realize the application. In the present study, we employ multi-frequency (X-band, 115 GHz and 230 GHz) continuous-wave (cw) and pulsed electron spin resonance (ESR) spectroscopy to investigate impurity contents and spin relaxation properties in various sizes of nanodiamonds. Spectra taken with our home-built 230/115 GHz cw/pulsed ESR spectrometer shows presence of two major impurity contents; single substitutional nitrogen impurities (P1) also common in bulk diamonds and paramagnetic impurities (denoted as X) unique to nanodiamonds. The ESR measurement also shows a strong dependence of the population ratio between P1 and X on particle size. Furthermore, we will discuss the nature of spin-lattice relaxation time T1 of nanodiamonds studied by pulsed ESR measurements at X-band, 115 GHz and 230 GHz.

  4. A Multi-Frequency Wide-Swath Spaceborne Cloud and Precipitation Imaging Radar

    NASA Technical Reports Server (NTRS)

    Li, Lihua; Racette, Paul; Heymsfield, Gary; McLinden, Matthew; Venkatesh, Vijay; Coon, Michael; Perrine, Martin; Park, Richard; Cooley, Michael; Stenger, Pete; Spence, Thomas; Retelny, Tom

    2016-01-01

    Microwave and millimeter-wave radars have proven their effectiveness in cloud and precipitation observations. The NASA Earth Science Decadal Survey (DS) Aerosol, Cloud and Ecosystems (ACE) mission calls for a dual-frequency cloud radar (W band 94 GHz and Ka-band 35 GHz) for global measurements of cloud microphysical properties. Recently, there have been discussions of utilizing a tri-frequency (KuKaW-band) radar for a combined ACE and Global Precipitation Measurement (GPM) follow-on mission that has evolved into the Cloud and Precipitation Process Mission (CaPPM) concept. In this presentation we will give an overview of the technology development efforts at the NASA Goddard Space Flight Center (GSFC) and at Northrop Grumman Electronic Systems (NGES) through projects funded by the NASA Earth Science Technology Office (ESTO) Instrument Incubator Program (IIP). Our primary objective of this research is to advance the key enabling technologies for a tri-frequency (KuKaW-band) shared-aperture spaceborne imaging radar to provide unprecedented, simultaneous multi-frequency measurements that will enhance understanding of the effects of clouds and precipitation and their interaction on Earth climate change. Research effort has been focused on concept design and trade studies of the tri-frequency radar; investigating architectures that provide tri-band shared-aperture capability; advancing the development of the Ka band active electronically scanned array (AESA) transmitreceive (TR) module, and development of the advanced radar backend electronics.

  5. Development of a Multi-frequency Interferometer Telescope for Radio Astronomy (MITRA)

    NASA Astrophysics Data System (ADS)

    Ingala, Dominique Guelord Kumamputu

    2015-03-01

    This dissertation describes the development and construction of the Multi-frequency Interferometer Telescope for Radio Astronomy (MITRA) at the Durban University of Technology. The MITRA station consists of 2 antenna arrays separated by a baseline distance of 8 m. Each array consists of 8 Log-Periodic Dipole Antennas (LPDAs) operating from 200 MHz to 800 MHz. The design and construction of the LPDA antenna and receiver system is described. The receiver topology provides an equivalent noise temperature of 113.1 K and 55.1 dB of gain. The Intermediate Frequency (IF) stage was designed to produce a fixed IF frequency of 800 MHz. The digital Back-End and correlator were implemented using a low cost Software Defined Radio (SDR) platform and Gnu-Radio software. Gnu-Octave was used for data analysis to generate the relevant received signal parameters including total power, real, and imaginary, magnitude and phase components. Measured results show that interference fringes were successfully detected within the bandwidth of the receiver using a Radio Frequency (RF) generator as a simulated source. This research was presented at the IEEE Africon 2013 / URSI Session Mauritius, and published in the proceedings.

  6. Advantages in using multi-frequency driving ultrasound for optimizing echo particle image velocimetry techniques.

    PubMed

    Zheng, Hairong; Mukdadi, Osama; Hertzberg, Jean; Shandas, Robin

    2004-01-01

    We have recently developed an ultrasound based velocimetry technique, termed echo particle image velocimetry (echo PIV). This method takes advantage of the non-linear backscatter characteristics of ultrasound contrast microbubbles when exposed to certain ultrasonic field. Preliminary in vitro, animal and clinical studies have shown significant promise of this method for measuring multiple velocity components with good temporal and spatial resolution. However, there is still difficulty in maximizing the non-linearity of bubble backscatter using conventional Gaussian-pulse excitation techniques because significant harmonic components may not be produced at modest pressure amplitudes and the higher incident pressure amplitudes required to induce non-linear behavior may cause bubble destruction. We present here a potential solution to this problem through the use of multi-frequency excitation. A rectangular pulse with multiple harmonics is used to drive the bubble. The backscatter process is studied through a modified Rayleigh-Plesset equation. Results show that the rectangular wave is effective in improving the visibility of microbubbles with ultrasound backscattered efficiency significantly higher than the widely used Gaussian waveform. Use of rectangular pulses with 4 and 2 harmonics showed no significant difference in bubble backscatter behavior, indicating that a two-frequency excitation may be sufficient to induce non-linear behavior of the microbubbles practically at modest incident pressures.

  7. Sonic IR crack detection of aircraft turbine engine blades with multi-frequency ultrasound excitations

    SciTech Connect

    Zhang, Ding; Han, Xiaoyan; Newaz, Golam

    2014-02-18

    Effectively and accurately detecting cracks or defects in critical engine components, such as turbine engine blades, is very important for aircraft safety. Sonic Infrared (IR) Imaging is such a technology with great potential for these applications. This technology combines ultrasound excitation and IR imaging to identify cracks and flaws in targets. In general, failure of engine components, such as blades, begins with tiny cracks. Since the attenuation of the ultrasound wave propagation in turbine engine blades is small, the efficiency of crack detection in turbine engine blades can be quite high. The authors at Wayne State University have been developing the technology as a reliable tool for the future field use in aircraft engines and engine parts. One part of the development is to use finite element modeling to assist our understanding of effects of different parameters on crack heating while experimentally hard to achieve. The development has been focused with single frequency ultrasound excitation and some results have been presented in a previous conference. We are currently working on multi-frequency excitation models. The study will provide results and insights of the efficiency of different frequency excitation sources to foster the development of the technology for crack detection in aircraft engine components.

  8. Detection of oyster habitat in tidal flats using multi-frequency polarimetric SAR data

    NASA Astrophysics Data System (ADS)

    Choe, Byung-Hun; Kim, Duk-jin; Hwang, Ji-Hwan; Oh, Yisok; Moon, Wooil M.

    2012-01-01

    Exposed oyster reefs in tidal flats have complex and rough surfaces because of their unique surface texture, which are quite distinct from the surrounding mud or sand flats. Here we investigate the microwave signatures, backscattered from naturally distributed oyster reefs in tidal flats, utilizing the polarimetric analysis techniques to fully polarimetric RADARSAT-2 (C-band) and ALOS PALSAR (L-band) data. The study areas include the tidal flats around Jebu Island and Hampyung Bay on the west coast of the Korean peninsula. We analyzed the microwave scattering mechanisms associated with oyster reefs and surrounding areas using the polarimetric target decomposition theorem and quantitatively measu ρHHVV red target depolarization effects (the cross-polarized ratio (HV/VV), the co-polarized correlation coefficient ( ρHHVV), and the co-polarized phase difference between HH and VV). On the basis of a large increase in the cross-polarized backscattering (HV) in the C-band SAR data, one can observe strong volume (or multiple) scattering and depolarization effects over oyster reefs areas, whereas only surface scattering was dominant in most parts of the background tidal areas. In oyster reefs, the proportion of volume scattering and the cross-polarized ratio were greater than 0.7 and -8 dB, respectively. These scattering characteristics were also verified from in-situ measurements in the field using a ground-based polarimetric scatterometer system. However, almost no difference was observed between the scattering signatures of oyster reefs and background mudflat areas from L-band data, which have a considerably longer wavelength than C-band. The study clearly suggests that multi-frequency (C- and L-band) polarimetric SAR systems can be used to detect the naturally distributed oyster reefs in tidal flats.

  9. Microvasculature alters the dispersion properties of shear waves--a multi-frequency MR elastography study.

    PubMed

    Jugé, Lauriane; Petiet, Anne; Lambert, Simon A; Nicole, Pascal; Chatelin, Simon; Vilgrain, Valerie; Van Beers, Bernard E; Bilston, Lynne E; Sinkus, Ralph

    2015-12-01

    Magnetic Resonance Elastography (MRE) uses macroscopic shear wave propagation to quantify mechanical properties of soft tissues. Micro-obstacles are capable of affecting the macroscopic dispersion properties of shear waves. Since disease or therapy can change the mechanical integrity and organization of vascular structures, MRE should be able to sense these changes if blood vessels represent a source for wave scattering. To verify this, MRE was performed to quantify alteration of the shear wave speed cs due to the presence of vascular outgrowths using an aortic ring model. Eighteen fragments of rat aorta included in a Matrigel matrix (n=6 without outgrowths, n=6 with a radial outgrowth extent of ~600 µm and n=6 with ~850 µm) were imaged using a 7 Tesla MR scanner (Bruker, PharmaScan). High resolution anatomical images were acquired in addition to multi-frequency MRE (ν = 100, 115, 125, 135 and 150 Hz). Average cs was measured within a ring of ~900 µm thickness encompassing the aorta and were normalized to cs0 of the corresponding Matrigel. The frequency dependence was fit to the power law model cs ~ν(y). After scanning, optical microscopy was performed to visualize outgrowths. Results demonstrated that in presence of vascular outgrowths (1) normalized cs significantly increased for the three highest frequencies (Kruskal-Wallis test, P = 0.0002 at 125 Hz and P = 0.002 at 135 Hz and P = 0.003 at 150 Hz) but not for the two lowest (Kruskal-Wallis test, P = 0.63 at 100 Hz and P = 0.87 at 115 Hz), and (2) normalized cs followed a power law behavior not seen in absence of vascular outgrowths (ANOVA test, P < 0.0001). These results showed that vascular outgrowths acted as micro-obstacles altering the dispersion relationships of propagating shear waves and that MRE could provide valuable information about microvascular changes.

  10. THE DOUBLE PULSAR ECLIPSES. I. PHENOMENOLOGY AND MULTI-FREQUENCY ANALYSIS

    SciTech Connect

    Breton, R. P.; Kaspi, V. M.; McLaughlin, M. A.; Lyutikov, M.; Kramer, M.; Stairs, I. H.; Ransom, S. M.; Ferdman, R. D.; Camilo, F.; Possenti, A.

    2012-03-10

    The double pulsar PSR J0737-3039A/B displays short, 30 s eclipses that arise around conjunction when the radio waves emitted by pulsar A are absorbed as they propagate through the magnetosphere of its companion pulsar B. These eclipses offer a unique opportunity to directly probe the magnetospheric structure and the plasma properties of pulsar B. We have performed a comprehensive analysis of the eclipse phenomenology using multi-frequency radio observations obtained with the Green Bank Telescope. We have characterized the periodic flux modulations previously discovered at 820 MHz by McLaughlin et al. and investigated the radio frequency dependence of the duration and depth of the eclipses. Based on their weak radio frequency evolution, we conclude that the plasma in pulsar B's magnetosphere requires a large multiplicity factor ({approx}10{sup 5}). We also found that, as expected, flux modulations are present at all radio frequencies in which eclipses can be detected. Their complex behavior is consistent with the confinement of the absorbing plasma in the dipolar magnetic field of pulsar B as suggested by Lyutikov and Thompson and such a geometric connection explains that the observed periodicity is harmonically related to pulsar B's spin frequency. We observe that the eclipses require a sharp transition region beyond which the plasma density drops off abruptly. Such a region defines a plasmasphere that would be well inside the magnetospheric boundary of an undisturbed pulsar. It is also two times smaller than the expected standoff radius calculated using the balance of the wind pressure from pulsar A and the nominally estimated magnetic pressure of pulsar B.

  11. Monopole and dipole estimation for multi-frequency sky maps by linear regression

    NASA Astrophysics Data System (ADS)

    Wehus, I. K.; Fuskeland, U.; Eriksen, H. K.; Banday, A. J.; Dickinson, C.; Ghosh, T.; Górski, K. M.; Lawrence, C. R.; Leahy, J. P.; Maino, D.; Reich, P.; Reich, W.

    2017-01-01

    We describe a simple but efficient method for deriving a consistent set of monopole and dipole corrections for multi-frequency sky map data sets, allowing robust parametric component separation with the same data set. The computational core of this method is linear regression between pairs of frequency maps, often called T-T plots. Individual contributions from monopole and dipole terms are determined by performing the regression locally in patches on the sky, while the degeneracy between different frequencies is lifted whenever the dominant foreground component exhibits a significant spatial spectral index variation. Based on this method, we present two different, but each internally consistent, sets of monopole and dipole coefficients for the nine-year WMAP, Planck 2013, SFD 100 μm, Haslam 408 MHz and Reich & Reich 1420 MHz maps. The two sets have been derived with different analysis assumptions and data selection, and provide an estimate of residual systematic uncertainties. In general, our values are in good agreement with previously published results. Among the most notable results are a relative dipole between the WMAP and Planck experiments of 10-15μK (depending on frequency), an estimate of the 408 MHz map monopole of 8.9 ± 1.3 K, and a non-zero dipole in the 1420 MHz map of 0.15 ± 0.03 K pointing towards Galactic coordinates (l,b) = (308°,-36°) ± 14°. These values represent the sum of any instrumental and data processing offsets, as well as any Galactic or extra-Galactic component that is spectrally uniform over the full sky.

  12. Radio frequency current-voltage probe for impedance and power measurements in multi-frequency unmatched loads.

    PubMed

    Lafleur, T; Delattre, P A; Booth, J P; Johnson, E V; Dine, S

    2013-01-01

    A broad-band, inline current-voltage probe, with a characteristic impedance of 50 Ω, is presented for the measurement of voltage and current waveforms, impedance, and power in rf systems. The probe, which uses capacitive and inductive sensors to determine the voltage and current, respectively, can be used for the measurement of single or multi-frequency signals into both matched and unmatched loads, over a frequency range of about 1-100 MHz. The probe calibration and impedance/power measurement technique are described in detail, and the calibrated probe results are compared with those obtained from a vector network analyzer and other commercial power meters. Use of the probe is demonstrated with the measurement of power into an unmatched capacitively coupled plasma excited by multi-frequency tailored voltage waveforms.

  13. A robust multi-frequency mixing algorithm for suppression of rivet signal in GMR inspection of riveted structures

    NASA Astrophysics Data System (ADS)

    Safdernejad, Morteza S.; Karpenko, Oleksii; Ye, Chaofeng; Udpa, Lalita; Udpa, Satish

    2016-02-01

    The advent of Giant Magneto-Resistive (GMR) technology permits development of novel highly sensitive array probes for Eddy Current (EC) inspection of multi-layer riveted structures. Multi-frequency GMR measurements with different EC pene-tration depths show promise for detection of bottom layer notches at fastener sites. However, the distortion of the induced magnetic field due to flaws is dominated by the strong fastener signal, which makes defect detection and classification a challenging prob-lem. This issue is more pronounced for ferromagnetic fasteners that concentrate most of the magnetic flux. In the present work, a novel multi-frequency mixing algorithm is proposed to suppress rivet signal response and enhance defect detection capability of the GMR array probe. The algorithm is baseline-free and does not require any assumptions about the sample geometry being inspected. Fastener signal suppression is based upon the random sample consensus (RANSAC) method, which iteratively estimates parameters of a mathematical model from a set of observed data with outliers. Bottom layer defects at fastener site are simulated as EDM notches of different length. Performance of the proposed multi-frequency mixing approach is evaluated on finite element data and experimental GMR measurements obtained with unidirectional planar current excitation. Initial results are promising demonstrating the feasibility of the approach.

  14. Multi-DOF rotor model based measurement of stiffness and damping for active magnetic bearing using multi-frequency excitation

    NASA Astrophysics Data System (ADS)

    Jiang, Kejian; Zhu, Changsheng; Chen, Liangliang; Qiao, Xiaoli

    2015-08-01

    To represent the support characteristic of active magnetic bearings (AMB), the commonly used parameters are the equivalent stiffness and the equivalent damping, which inherit the parameters of the stiffness and the damping from traditional mechanical bearings. First, by analyzing the diversity and the similarity between traditional mechanical bearing and AMB, the prior condition for applying the parametric representation of equivalent stiffness and equivalent damping to AMB is illuminated. Then, a method for measuring the equivalent stiffness and the equivalent damping of AMB-rotor system is proposed with multi-frequency excitation. One of its outstanding features is that the proposed method is based on the multi-degree of freedom (DOF) rotor model, not the single- DOF model, because the single DOF model cannot be suitably applied to the multi-DOF AMB-rotor systems. Otherwise, in order to decrease the identification error, the multi-frequency excitation can achieve the lowest peak value by means of appropriate selection for the relative phasing of each component, so that the possibility of the rotor displacement exceeding clearances of AMB and the magnetic force reaching saturation is minimized. Finally, the experiments, which are carried out on an AMB-rotor test rig with a vertical shaft, indicate that the proposed method can efficiently reduce the peak value for the superimposed multi-frequency excitation and correctly identify the equivalent stiffness and equivalent damping of AMB-rotor system.

  15. Multi-Frequency Synthesis - a New Technique in Radio Interferometric Imaging

    NASA Astrophysics Data System (ADS)

    Conway, J. E.; Cornwell, T. J.; Wilkinson, P. N.

    1990-10-01

    We describe an extension to aperture synthesis, multi-frequency synthesis or MFS, whose principal goal is to allow high-quality radio images to be obtained from spars interferometric arrays. The idea is to use data from a relatively narrow range of frequencies (typically +/- 10 per cent) to produce a major improvement in the aperture-plane coverage of an array. From these data one can reconstruct an image at a single reference frequency in which the 'reconstruction errors', which normally occur as a result of large 'holes' in the aperture plane, are much reduced. The obvious problem to -be overcome is that the source brightness distribution is slightly different at each frequency. We analyse the 'spectral errors' introduced into the reconstructed image by this frequency-dependent structure. For a +/- 1 2.5 per cent range of frequencies we show that typically, spectral errors will be below the thermal noise level provided that the ratio of the peak brightness (excluding any compact component such as a radio core) to rms noise is less than a thousand-to-one, Unresolved features can be identified easily and effectively removed from the data a each frequency and hence they need not be a source of spectral errors. When this spectral errors are above the noise they can be recognized and removed by an extension to the well-established CLEAN deconvolution methodi We call the new method 'double deconvolution', or DD, and demonstrate its effectiveness 0 simulated data. The primary motivation beyond narrow-band MFS observations is to produce improved intensity images, rather than to determine spectral index distributions. Although the DD algorithm effectively estimates the spectral index distribution in the course of removing spectral effects, these estimates will be crude and not generally of astrophysical use. We briefly consider the practical problems involved in making MFS observations and conclude that the major limiting factor is likely to be radio

  16. Land subsidence in the Yangtze River Delta, China revealed from multi-frequency SAR Interferometry

    NASA Astrophysics Data System (ADS)

    Li, Zhenhong; Motagh, Mahdi; Yu, Jun; Gong, Xulong; Wu, Jianqiang; Zhu, Yefei; Chen, Huogen; Zhang, Dengming; Xu, Yulin

    2014-05-01

    of multi-frequency SAR datasets allows a long record (~20 years) of historic deformation to be measured over a large region. Ultimately this should help inform land managers in assessing land subsidence and planning appropriate remedial measures.

  17. Multi-frequency survey of background radiations of the Universe. The "Cosmological Gene" project. First results

    NASA Astrophysics Data System (ADS)

    Parijskij, Yu. N.; Mingaliev, M. G.; Nizhel'Skii, N. A.; Bursov, N. N.; Berlin, A. B.; Grechkin, A. A.; Zharov, V. I.; Zhekanis, G. V.; Majorova, E. K.; Semenova, T. A.; Stolyarov, V. A.; Tsybulev, P. G.; Kratov, D. V.; Udovitskii, R. Yu.; Khaikin, V. B.

    2011-10-01

    The results of the first stage of the "Cosmological Gene" project of the Russian Academy of Sciences are reported. These results consist in the accumulation of multi-frequency data in 31 frequency channels in the wavelength interval 1-55 cm with maximum achievable statistical sensitivity limited by the noise of background radio sources at all wavelengths exceeding 1.38 cm. The survey region is determined by constraints 00 h < RA < 24 h and 40°30' < DEC < 42°30'. The scientific goals of the project are refined in view of recent proposals to use cosmological background radiation data for the development of a unified physical theory. Experimental data obtained with the RATAN-600 radio telescope are used to refine the contribution of the main "screens" located between the observer and the formation epoch of cosmic background radiation ( z = 1100). Experimental data for synchrotron radiation and free-free noise on scales that are of interest for the anisotropy of cosmic microwave background are reported as well as the contribution of these noise components in millimeter-wave experiments to be performed in the nearest years. The role of dipole radio emission of fullerene-type dust nanostructures is shown to be small. The most precise estimates of the role of background radio sources with inverted spectra are given and these sources are shown to create no serious interference in experiments. The average spectral indices of the weakest sources of the NVSS and FIRST catalogs are estimated. The "saturation" data for all wavelengths allowed a constraint to be imposed on the Sunyaev-Zeldovich noise (the SZ noise) at all wavelengths, and made it possible to obtain independent estimates of the average sky temperature from sources, substantially weaker than those listed in the NVSS catalog. These estimates are inconsistent with the existence of powerful extragalactic synchrotron background associated with radio sources. Appreciable "quadrupole" anisotropy in is detected in the

  18. A multi-frequency study of an X ray selected sample of active galactic nuclei

    NASA Astrophysics Data System (ADS)

    Grossan, Bruce Alan

    1992-01-01

    The LASS (Large Area Sky Survey) experiment, which flew aboard the HEAO-1 spacecraft, carried out a 2-20 keV survey of the sky during 1977-1978. The X-ray sources from this survey make up the LASS catalog (Wood et al. 1979). Optical counterparts have been identified for greater than 86 percent of the LASS sources above a flux of approx. 0.95 microns (mu)Jy Q 5 keV (Remillard 1992b). The LASS error boxes, along with the more precise positions from the Modulation Collimator (MC) X-ray experiment (also aboard HEAO-1), subsequent X-ray imaging, and optical search techniques were all used to identify the LASS sources. From these identifications, a high-latitude (absolute value of b greater than 20 deg.), flux limited (greater than or equal to 0.95 (mu)Jy) sample of 96 emission line Active Galactic Nuclei (AGN) have been selected for study. The sample is referred to as the LMA (for the LASS/MC identified sample of AGN). The objective of this work is to produce multi-frequency spectra of this sample of objects, in order to determine and interpret the statistical properties of the sample over nearly the full range of observable wavelengths. Data were obtained for as much of the radio through hard X-ray (less than 20 keV) spectrum as possible for each object in the LMA. Radio, near infrared, and other measurements were taken from the literature, far IR fluxes were extracted from co-added observations from IRAS, UV spectra were obtained from the IUE archives, and original observations were performed (with the help of collaborators) in the radio, near IR, optical, UV, and X-ray to fulfill this goal. Correlation studies of the continuum bands found poor correlations of X-ray and radio flux, good correlations for 12 and 26 micron flux with X-ray flux, excellent correlations for optical and near IR fluxes with X-rays, and poor correlations of UV and X-ray fluxes. Correlation studies of the line and X-ray continuum flux yield a good correlation between the flux of (OIII), the

  19. Plasmonic Encoding

    DTIC Science & Technology

    2014-10-06

    AFRL-OSR-VA-TR-2014-0291 PLASMONIC ENCODING Chad Mirkin NORTHWESTERN UNIVERSITY Final Report 10/06/2014 DISTRIBUTION A: Distribution approved for...2014 4.  TITLE AND SUBTITLE PLASMONIC ENCODING 5a.  CONTRACT NUMBER 5b.  GRANT NUMBER FA9550-09-1-0294 5c.  PROGRAM ELEMENT NUMBER 6.  AUTHOR(S) Chad...called Nanoflares. 15.  SUBJECT TERMS plasmonic , encoding 16.  SECURITY CLASSIFICATION OF: 17.  LIMITATION OF       ABSTRACT UU 18.  NUMBER        OF

  20. Differential modulation and demodulation of multi-frequency digital communications signals

    NASA Astrophysics Data System (ADS)

    Moose, Paul H.

    Multiple-frequency modulation (MFM) is a bandwidth-efficient digital communication signaling technique that may be used effectively in mobile satellite communications links. Algorithms for generating and demodulating differentially encoded multifrequency quadrature phase shift keyed (MFQPSK) signals using discrete Fourier transform (DFT) techniques are discussed. The theory and a prototype system for differentially encoding and decoding MFQPSK in the frequency domain are developed. By using long baud intervals and corresponding small spacing of the carrier tones, problems associated with channel fading are greatly relieved with respect to the previous method of differentially encoding the multiple carrier tones from baud to baud. An MFM system has been configured to transmit MFQPSK over a 4-kHz bandpass channel. Tone spacings, or baud rates, of 15, 30, 60, 120, and 240 Hz were tested. Output signal-to-noise ratios were estimated by computing sample means and variances of the real and imaginary parts of Xa. Experimental results are presented showing good agreement with the theory.

  1. Retrieving small features in reflection-mode raster-scan optoacoustic mesoscopy (RSOM) using multi-frequency reconstruction

    NASA Astrophysics Data System (ADS)

    Omar, Murad; Soliman, Dominik; Gateau, Jérôme; Ntziachristos, Vasilis

    2015-03-01

    We developed a reflection-mode, raster-scan optoacoustic mesoscopy system, based on a custom-made ultrasonic detector, with an ultra wide bandwidth of 20-180 MHz. To optimally use this bandwidth, we implemented multifrequency reconstruction. System characterization reveals a 4 μm axial, and 18 μm transverse resolution, at penetration depths reaching 5 mm. After characterization, the system was applied to image a zebrafish ex vivo, and an excised mouse ear. In the zebrafish, the lateral line, intestines, eyes, and melanocytes are seen, while in the mouse ear, multi-frequency reconstruction recovered the small vessels, otherwise not seen on the image.

  2. Evaluation of Long-Term Cloud-Resolving Model Simulations Using Satellite Radiance Observations and Multi-Frequency Satellite Simulators

    NASA Technical Reports Server (NTRS)

    Matsui, Toshihisa; Zeng, Xiping; Tao, Wei-Kuo; Masunaga, Hirohiko; Olson, William S.; Lang, Stephen

    2008-01-01

    This paper proposes a methodology known as the Tropical Rainfall Measuring Mission (TRMM) Triple-Sensor Three-step Evaluation Framework (T3EF) for the systematic evaluation of precipitating cloud types and microphysics in a cloud-resolving model (CRM). T3EF utilizes multi-frequency satellite simulators and novel statistics of multi-frequency radiance and backscattering signals observed from the TRMM satellite. Specifically, T3EF compares CRM and satellite observations in the form of combined probability distributions of precipitation radar (PR) reflectivity, polarization-corrected microwave brightness temperature (Tb), and infrared Tb to evaluate the candidate CRM. T3EF is used to evaluate the Goddard Cumulus Ensemble (GCE) model for cases involving the South China Sea Monsoon Experiment (SCSMEX) and Kwajalein Experiment (KWAJEX). This evaluation reveals that the GCE properly captures the satellite-measured frequencies of different precipitating cloud types in the SCSMEX case but underestimates the frequencies of deep convective and deep stratiform types in the KWAJEX case. Moreover, the GCE tends to simulate excessively large and abundant frozen condensates in deep convective clouds as inferred from the overestimated GCE-simulated radar reflectivities and microwave Tb depressions. Unveiling the detailed errors in the GCE s performance provides the best direction for model improvements.

  3. Classification of heavy metal ions present in multi-frequency multi-electrode potable water data using evolutionary algorithm

    NASA Astrophysics Data System (ADS)

    Karkra, Rashmi; Kumar, Prashant; Bansod, Baban K. S.; Bagchi, Sudeshna; Sharma, Pooja; Krishna, C. Rama

    2016-12-01

    Access to potable water for the common people is one of the most challenging tasks in the present era. Contamination of drinking water has become a serious problem due to various anthropogenic and geogenic events. The paper demonstrates the application of evolutionary algorithms, viz., particle swan optimization and genetic algorithm to 24 water samples containing eight different heavy metal ions (Cd, Cu, Co, Pb, Zn, Ar, Cr and Ni) for the optimal estimation of electrode and frequency to classify the heavy metal ions. The work has been carried out on multi-variate data, viz., single electrode multi-frequency, single frequency multi-electrode and multi-frequency multi-electrode water samples. The electrodes used are platinum, gold, silver nanoparticles and glassy carbon electrodes. Various hazardous metal ions present in the water samples have been optimally classified and validated by the application of Davis Bouldin index. Such studies are useful in the segregation of hazardous heavy metal ions found in water resources, thereby quantifying the degree of water quality.

  4. Frozen Gaussian approximation-based two-level methods for multi-frequency Schrödinger equation

    NASA Astrophysics Data System (ADS)

    Lorin, E.; Yang, X.

    2016-10-01

    In this paper, we develop two-level numerical methods for the time-dependent Schrödinger equation (TDSE) in multi-frequency regime. This work is motivated by attosecond science (Corkum and Krausz, 2007), which refers to the interaction of short and intense laser pulses with quantum particles generating wide frequency spectrum light, and allowing for the coherent emission of attosecond pulses (1 attosecond=10-18 s). The principle of the proposed methods consists in decomposing a wavefunction into a low/moderate frequency (quantum) contribution, and a high frequency contribution exhibiting a semi-classical behavior. Low/moderate frequencies are computed through the direct solution to the quantum TDSE on a coarse mesh, and the high frequency contribution is computed by frozen Gaussian approximation (Herman and Kluk, 1984). This paper is devoted to the derivation of consistent, accurate and efficient algorithms performing such a decomposition and the time evolution of the wavefunction in the multi-frequency regime. Numerical simulations are provided to illustrate the accuracy and efficiency of the derived algorithms.

  5. Soil moisture from the recent AMSR2 and FY3B multi-frequency passive microwave sensors

    NASA Astrophysics Data System (ADS)

    Parinussa, Robert; Wang, Guojie; de Jeu, Richard

    2014-05-01

    Over the years several different multi-frequency passive microwave sensors were used to estimate surface soil moisture. An historical multi-frequency passive microwave database from these satellite platforms was already used to generate a long term (32 years) surface soil moisture dataset. The Land Parameter Retrieval Algorithm (LPRM) was applied to this historical multi-frequency passive microwave database, including the Advanced Microwave Scanning Radiometer - Earth Observing System (AMSR-E), that plays a dominant role in the 2002-2011 period. The Advanced Microwave Scanning Radiometer 2 (AMSR2) shares a similar design with its predecessor, it was improved based on general technical development as well as the valuable heritage that AMSR-E left behind. Most recently, the Japanese Aerospace Exploration Agency (JAXA) started offering brightness temperature observations from the AMSR2 radiometer. In the recent years, China's National Satellite Meteorological Center (NSMC) developed meteorological satellites. The NSMC has polar orbiting sun-synchronized meteorological satellites in operation since 1988 in the so-called FengYun (FY) satellite series. FY3 is China's 2nd generation polar orbiting satellite series, its design was based on the previous polar orbiting satellite series and FY3 will ultimately become series of four satellites (FY3A to FY3D). The FY3B satellite is the 2nd satellite of the FY3 series and it's the 1st in the series to carry a microwave imager (MWRI) onboard observing the Earth's surface in 10 microwave channels. Brightness temperature observations of these recently developed sensors were compared to the existing database. An inter-calibration step was performed in order to overcome small difference in brightness temperature observations as a result of the different sensor calibration procedures. The LPRM was applied to observations made by the FY3B and AMSR2 sensors resulting in global soil moisture products. After the implementation of the

  6. Ion beams extraction and measurements of plasma parameters on a multi-frequencies microwaves large bore ECRIS with permanent magnets

    SciTech Connect

    Nozaki, Dai; Kiriyama, Ryutaro; Takenaka, Tomoya; Kurisu, Yosuke; Yano, Keisuke; Sato, Fuminobu; Kato, Yushi; Iida, Toshiyuki

    2012-11-06

    We have developed an all-permanent magnet large bore electron cyclotron resonance ion source (ECRIS) for broad ion beam processing. The cylindrically comb-shaped magnetic field configuration is adopted for efficient plasma production and good magnetic confinement. To compensate for disadvantages of fixed magnetic configuration, a traveling wave tube amplifier (TWTA) is used. In the comb-shaped ECRIS, it is difficult to achieve controlling ion beam profiles in the whole inside the chamber by using even single frequency-controllable TWTA (11-13GHz), because of large bore size with all-magnets. We have tried controlling profiles of plasma parameters and then those of extracted ion beams by launching two largely different frequencies simultaneously, i.e., multi-frequencies microwaves. Here we report ion beam profiles and corresponding plasma parameters under various experimental conditions, dependence of ion beams against extraction voltages, and influence of different electrode positions on the electron density profile.

  7. Multi-frequency, multi-technique pulsed EPR investigation of the copper binding site of murine amyloid β peptide.

    PubMed

    Kim, Donghun; Bang, Jeong Kyu; Kim, Sun Hee

    2015-01-26

    Copper-amyloid peptides are proposed to be the cause of Alzheimer's disease, presumably by oxidative stress. However, mice do not produce amyloid plaques and thus do not suffer from Alzheimer's disease. Although much effort has been focused on the structural characterization of the copper- human amyloid peptides, little is known regarding the copper-binding mode in murine amyloid peptides. Thus, we investigated the structure of copper-murine amyloid peptides through multi-frequency, multi-technique pulsed EPR spectroscopy in conjunction with specific isotope labeling. Based on our pulsed EPR results, we found that Ala2, Glu3, His6, and His14 are directly coordinated with the copper ion in murine amyloid β peptides at pH 8.5. This is the first detailed structural characterization of the copper-binding mode in murine amyloid β peptides. This work may advance the knowledge required for developing inhibitors of Alzheimer's disease.

  8. A new narrow-beam, multi-frequency, scanning radiometer and its application to in-flight icing detection

    NASA Astrophysics Data System (ADS)

    Serke, David J.; Reed, Kimberly A.; Negus, James; Blanchette, Levi; Ware, Randolph; Kennedy, Patrick C.

    2017-03-01

    A one degree beamwidth, multi-frequency (20 to 30 and 89GHz), dual-polarization radiometer with full azimuth and elevation scanning capabilities was built with the purpose of improving the detection of in-flight icing hazards to aircraft in the near airport environment. This goal was achieved by collocating the radiometer with Colorado State University's CHILL polarized Doppler radar and leveraging the similar beamwidth and volume scan regiments of the two instruments. The collocated instruments allowed for the liquid water path and water vapor measurements derived from the radiometer to be merged with the radar moment fields to determine microphysical and water phase characteristics aloft. The radiometer was field tested at Colorado State University's CHILL radar site near Greeley, Colorado during the summer of 2009. Instrument design, calibration, and initial field testing results are discussed in this paper.

  9. Comparison Of Multi-Frequency SAR Land Cover Signatures For Multi-Site Semi-Arid Regions Of Africa

    NASA Astrophysics Data System (ADS)

    Spies, Bernard; Lamb, Alistair; Brown, Sarah, Balzter, Heiko; Fisher, Peter

    2013-12-01

    This study shows the analysis and comparison of different SAR backscatter signatures (σ0 distributions) for distinguishable land cover types over two semi-arid test sites in Africa. The two sites that were chosen are located in Tanzania and Chad, where existing multi- frequency data was available from the different synthetic aperture radar (SAR) archives. Images were grouped into wet and dry season for the Tanzania site, whereas only dry season imagery was available for the Chad site. An IsoData unsupervised classification was applied on all three sets of images to classify seven land cover classes. Random samples were taken from each of the classes, resulting in σ0 distributions for the different classes for each site. These SAR land cover signatures are interpreted and discussed, with further steps identified.

  10. Mapping power-law rheology of living cells using multi-frequency force modulation atomic force microscopy

    SciTech Connect

    Takahashi, Ryosuke; Okajima, Takaharu

    2015-10-26

    We present multi-frequency force modulation atomic force microscopy (AFM) for mapping the complex shear modulus G* of living cells as a function of frequency over the range of 50–500 Hz in the same measurement time as the single-frequency force modulation measurement. The AFM technique enables us to reconstruct image maps of rheological parameters, which exhibit a frequency-dependent power-law behavior with respect to G{sup *}. These quantitative rheological measurements reveal a large spatial variation in G* in this frequency range for single cells. Moreover, we find that the reconstructed images of the power-law rheological parameters are much different from those obtained in force-curve or single-frequency force modulation measurements. This indicates that the former provide information about intracellular mechanical structures of the cells that are usually not resolved with the conventional force measurement methods.

  11. 2WHSP: A multi-frequency selected catalog of VHE gamma-ray blazars and blazar candidates

    NASA Astrophysics Data System (ADS)

    Chang, Yu Lin; Arsioli, Bruno; Giommi, Paolo; Padovani, Paolo

    2016-08-01

    High Synchrotron Peaked Blazars (HSPs) are extremely important for VHE astronomy. We built the largest existing catalog of High Synchrotron Blazars (2WHSP) based on multi-frequency data. The catalog is an extension of the 1WHSP list. We compared several general properties of HSPs such as the synchrotron peak, the redshift and IR the color-color diagram. We also built the logN-logS for the sources, trying to see the evolution and the deficiency of the catalog. The catalog will provide a unique sample of targets for VHE observations in future since the HSPs are the dominant extra-Galactic sources in VHE sky. This might help find more VHE sources later. In the future, we will use this catalog to estimate other VHE properties of HSPs.

  12. AGN Astrophysics via Multi-Frequency Monitoring of γ-ray Blazars in the Fermi-GST Era

    NASA Astrophysics Data System (ADS)

    Angelakis, E.; Angelakis, E.; Fuhrmann, L.; Zensus, J. A.; Nestoras, I.; Marchili, N.; Krichbaum, T. P.; Ungerechts, H.; Max-Moerbeck, W.; Pavlidou, V.; Pearson, T. J.; Readhead, A. C. S.; Richards, J. L.; Stevenson, M. A.

    2010-10-01

    The F-GAMMA-project is the coordinated effort of several observatories to understand the AGN phenomenon and specifically blazars via multi-frequency monitoring in collaboration with the Fermi-GST satellite since January 2007. The core observatories are: the Effelsberg 100-m, the IRAM 30-m and the OVRO 40-m telescope covering the range between 2.6 and 270 GHz. Effelsberg and IRAM stations do a monthly monitoring of the cm to sub-mm radio spectra of 60 selected blazars whereas the OVRO telescope is observing roughly 1200 objects at 15 GHz with a dense sampling of 2 points per week. The calibration uncertainty even at high frequencies, is of a few percent. 47% of the Effelsberg/Pico Veleta sample is included in the LBAS list. An update of the monitored sample is currently underway.

  13. Wired/wireless access integrated RoF-PON with scalable generation of multi-frequency MMWs enabled by polarization multiplexed FWM in SOA.

    PubMed

    Xiang, Yu; Chen, Chen; Zhang, Chongfu; Qiu, Kun

    2013-01-14

    In this paper, we propose and demonstrate a novel integrated radio-over-fiber passive optical network (RoF-PON) system for both wired and wireless access. By utilizing the polarization multiplexed four-wave mixing (FWM) effect in a semiconductor optical amplifier (SOA), scalable generation of multi-frequency millimeter-waves (MMWs) can be provided so as to assist the configuration of multi-frequency wireless access for the wire/wireless access integrated ROF-PON system. In order to obtain a better performance, the polarization multiplexed FWM effect is investigated in detail. Simulation results successfully verify the feasibility of our proposed scheme.

  14. Multi-frequency electrical impedance tomography as a non-invasive tool to characterize and monitor crop root systems

    NASA Astrophysics Data System (ADS)

    Weigand, Maximilian; Kemna, Andreas

    2017-02-01

    A better understanding of root-soil interactions and associated processes is essential in achieving progress in crop breeding and management, prompting the need for high-resolution and non-destructive characterization methods. To date, such methods are still lacking or restricted by technical constraints, in particular the charactization and monitoring of root growth and function in the field. A promising technique in this respect is electrical impedance tomography (EIT), which utilizes low-frequency (< 1 kHz)- electrical conduction- and polarization properties in an imaging framework. It is well established that cells and cell clusters exhibit an electrical polarization response in alternating electric-current fields due to electrical double layers which form at cell membranes. This double layer is directly related to the electrical surface properties of the membrane, which in turn are influenced by nutrient dynamics (fluxes and concentrations on both sides of the membranes). Therefore, it can be assumed that the electrical polarization properties of roots are inherently related to ion uptake and translocation processes in the root systems. We hereby propose broadband (mHz to hundreds of Hz) multi-frequency EIT as a non-invasive methodological approach for the monitoring and physiological, i.e., functional, characterization of crop root systems. The approach combines the spatial-resolution capability of an imaging method with the diagnostic potential of electrical-impedance spectroscopy. The capability of multi-frequency EIT to characterize and monitor crop root systems was investigated in a rhizotron laboratory experiment, in which the root system of oilseed plants was monitored in a water-filled rhizotron, that is, in a nutrient-deprived environment. We found a low-frequency polarization response of the root system, which enabled the successful delineation of its spatial extension. The magnitude of the overall polarization response decreased along with the

  15. Nine years of multi-frequency monitoring of the blazar PKS 0048-097: spectral and temporal variability

    NASA Astrophysics Data System (ADS)

    Wierzcholska, Alicja

    2015-08-01

    Context. Blazars are highly variable, radio-loud active galactic nuclei with jets oriented at a small angle to the line of sight. The observed emission of these sources covers the whole electromagnetic spectrum from radio frequencies up to the high or even very high energy gamma-ray range. To understand the complex physics of these objects, multi-wavelength observations and studies on the variability and correlations between different wavelengths are therefore essential. Aims: The long-term multi-frequency observations of PKS 0048-097 are analysed here to investigate its spectral and temporal features. The studies includes nine years of observations of the blazar, which is well studied in the optical and radio domain, but not in the other frequencies. Methods: Multi-wavelength data collected with OVRO, KAIT, Catalina, Swift/UVOT, Swift/XRT, and Fermi/LAT were studied. Results: The performed analysis revealed strong variability in all wavelengths that is most clearly manifested in the X-ray range. The correlation studies do not exhibit any relation between different wavelengths, except for the very strong positive correlation between the optical emission in V and R bands.

  16. Continuous-scanning laser Doppler vibrometry: Extensions to arbitrary areas, multi-frequency and 3D capture

    SciTech Connect

    Weekes, B.; Ewins, D.; Acciavatti, F.

    2014-05-27

    To date, differing implementations of continuous scan laser Doppler vibrometry have been demonstrated by various academic institutions, but since the scan paths were defined using step or sine functions from function generators, the paths were typically limited to 1D line scans or 2D areas such as raster paths or Lissajous trajectories. The excitation was previously often limited to a single frequency due to the specific signal processing performed to convert the scan data into an ODS. In this paper, a configuration of continuous-scan laser Doppler vibrometry is demonstrated which permits scanning of arbitrary areas, with the benefit of allowing multi-frequency/broadband excitation. Various means of generating scan paths to inspect arbitrary areas are discussed and demonstrated. Further, full 3D vibration capture is demonstrated by the addition of a range-finding facility to the described configuration, and iteratively relocating a single scanning laser head. Here, the range-finding facility was provided by a Microsoft Kinect, an inexpensive piece of consumer electronics.

  17. System Description and First Application of an FPGA-Based Simultaneous Multi-Frequency Electrical Impedance Tomography

    PubMed Central

    Aguiar Santos, Susana; Robens, Anne; Boehm, Anna; Leonhardt, Steffen; Teichmann, Daniel

    2016-01-01

    A new prototype of a multi-frequency electrical impedance tomography system is presented. The system uses a field-programmable gate array as a main controller and is configured to measure at different frequencies simultaneously through a composite waveform. Both real and imaginary components of the data are computed for each frequency and sent to the personal computer over an ethernet connection, where both time-difference imaging and frequency-difference imaging are reconstructed and visualized. The system has been tested for both time-difference and frequency-difference imaging for diverse sets of frequency pairs in a resistive/capacitive test unit and in self-experiments. To our knowledge, this is the first work that shows preliminary frequency-difference images of in-vivo experiments. Results of time-difference imaging were compared with simulation results and shown that the new prototype performs well at all frequencies in the tested range of 60 kHz–960 kHz. For frequency-difference images, further development of algorithms and an improved normalization process is required to correctly reconstruct and interpreted the resulting images. PMID:27463715

  18. MULTI-FREQUENCY STUDIES OF RADIO RELICS IN THE GALAXY CLUSTERS A4038, A1664, AND A786

    SciTech Connect

    Kale, Ruta; Dwarakanath, K. S.

    2012-01-01

    We present a multi-frequency study of radio relics associated with the galaxy clusters A4038, A1664, and A786. Radio images, integrated spectra, spectral index maps, and fits to the integrated spectra in the framework of the adiabatic compression model are presented. Images of the relic in A4038 at 150, 240, and 606 MHz with the Giant Meterwave Radio Telescope have revealed extended ultra-steep spectrum ({alpha} {approx} -1.8 to -2.7) emission of extent 210 Multiplication-Sign 80 kpc{sup 2}. The model of passively evolving radio lobes compressed by a shock fits the integrated spectrum best. The relic with a circular morphology at the outskirts of the cluster A1664 has an integrated spectral index of {approx} - 1.10 {+-} 0.06 and is best fit by the model of radio lobes lurking for {approx}4 Multiplication-Sign 10{sup 7} yr. The relic near A786 has a curved spectrum and is best fit by a model of radio lobes lurking for {approx}3 Multiplication-Sign 10{sup 7} yr. At 4.7 GHz, a compact radio source, possibly the progenitor of the A786 relic, is detected near the center of the radio relic. The A786 radio relic is thus likely a lurking radio galaxy rather than a site of cosmological shock as has been considered in earlier studies.

  19. On the self-excitation mechanisms of plasma series resonance oscillations in single- and multi-frequency capacitive discharges

    SciTech Connect

    Schüngel, Edmund; Brandt, Steven; Schulze, Julian; Korolov, Ihor; Derzsi, Aranka; Donkó, Zoltán

    2015-04-15

    The self-excitation of plasma series resonance (PSR) oscillations is a prominent feature in the current of low pressure capacitive radio frequency discharges. This resonance leads to high frequency oscillations of the charge in the sheaths and enhances electron heating. Up to now, the phenomenon has only been observed in asymmetric discharges. There, the nonlinearity in the voltage balance, which is necessary for the self-excitation of resonance oscillations with frequencies above the applied frequencies, is caused predominantly by the quadratic contribution to the charge-voltage relation of the plasma sheaths. Using Particle In Cell/Monte Carlo collision simulations of single- and multi-frequency capacitive discharges and an equivalent circuit model, we demonstrate that other mechanisms, such as a cubic contribution to the charge-voltage relation of the plasma sheaths and the time dependent bulk electron plasma frequency, can cause the self-excitation of PSR oscillations, as well. These mechanisms have been neglected in previous models, but are important for the theoretical description of the current in symmetric or weakly asymmetric discharges.

  20. Development of a multi-frequency diffuse photon density wave device for the characterization of tissue damage at multiple depths

    NASA Astrophysics Data System (ADS)

    Diaz, David; Weingarten, Michael S.; Neidrauer, Michael T.; Samuels, Joshua A.; Huneke, Richard B.; Kuzmin, Vladimir L.; Lewin, Peter A.; Zubkov, Leonid A.

    2014-02-01

    The ability to determine the depth and degree of cutaneous and subcutaneous tissue damage is critical for medical applications such as burns and pressure ulcers. The Diffuse Photon Density Wave (DPDW) methodology at near infrared wavelengths can be used to non-invasively measure the optical absorption and reduced scattering coefficients of tissue at depths of several millimeters. A multi-frequency DPDW system with one light source and one detector was constructed so that light is focused onto the tissue surface using an optical fiber and lens mounted to a digitally-controlled actuator which changes the distance between light source and detector. A variable RF generator enables the modulation frequency to be selected between 50 to 400MHz. The ability to digitally control both source-detector separation distance and modulation frequency allows for virtually unlimited number of data points, enabling precise selection of the volume and depth of tissue that will be characterized. Suspensions of Intralipid and india ink with known absorption and reduced scattering coefficients were used as optical phantoms to assess device accuracy. Solid silicon phantoms were formulated for stability testing. Standard deviations for amplitude and phase shift readings were found to be 0.9% and 0.2 degrees respectively, over a one hour period. The ability of the system to quantify tissue damage in vivo at multiple depths was tested in a porcine burn model.

  1. Towards a reference cavitating vessel Part III—design and acoustic pressure characterization of a multi-frequency sonoreactor

    NASA Astrophysics Data System (ADS)

    Wang, Lian; Memoli, Gianluca; Hodnett, Mark; Butterworth, Ian; Sarno, Dan; Zeqiri, Bajram

    2015-08-01

    A multi-frequency cavitation vessel (RV-multi) has been commissioned at the National Physical Laboratory (NPL, UK), with the aim of establishing a standard source of acoustic cavitation in water, with reference to which details of the cavitation process can be studied and cavitation measurement techniques evaluated. The vessel is a cylindrical cavity with a maximum capacity up to 17 L, and is designed to work at six frequency ranges, from 21 kHz to 136 kHz, under controlled temperature conditions. This paper discusses the design of RV-multi and reports experiments carried out to establish the reproducibility of the acoustic pressure field established within the vessel and its operating envelope, including sensitivity to aspects such as water depth and temperature. The acoustic field distribution was determined along the radial and depth directions within the vessel using a miniature hydrophone, for two input voltage levels under low power transducer excitation conditions (e.g. below the cavitation threshold). Particular care was taken in determining peak acoustic pressure locations, as these are critical for accompanying cavitation studies. Perturbations of the vessel by the measuring hydrophone were also monitored with a bottom-mounted pressure sensor.

  2. Multi-frequency and polarimetric radar backscatter signatures for discrimination between agricultural crops at the Flevoland experimental test site

    NASA Technical Reports Server (NTRS)

    Freeman, A.; Villasenor, J.; Klein, J. D.

    1991-01-01

    We describe the calibration and analysis of multi-frequency, multi-polarization radar backscatter signatures over an agriculture test site in the Netherlands. The calibration procedure involved two stages: in the first stage, polarimetric and radiometric calibrations (ignoring noise) were carried out using square-base trihedral corner reflector signatures and some properties of the clutter background. In the second stage, a novel algorithm was used to estimate the noise level in the polarimetric data channels by using the measured signature of an idealized rough surface with Bragg scattering (the ocean in this case). This estimated noise level was then used to correct the measured backscatter signatures from the agriculture fields. We examine the significance of several key parameters extracted from the calibrated and noise-corrected backscatter signatures. The significance is assessed in terms of the ability to uniquely separate among classes from 13 different backscatter types selected from the test site data, including eleven different crops, one forest and one ocean area. Using the parameters with the highest separation for a given class, we use a hierarchical algorithm to classify the entire image. We find that many classes, including ocean, forest, potato, and beet, can be identified with high reliability, while the classes for which no single parameter exhibits sufficient separation have higher rates of misclassification. We expect that modified decision criteria involving simultaneous consideration of several parameters increase performance for these classes.

  3. System Description and First Application of an FPGA-Based Simultaneous Multi-Frequency Electrical Impedance Tomography.

    PubMed

    Aguiar Santos, Susana; Robens, Anne; Boehm, Anna; Leonhardt, Steffen; Teichmann, Daniel

    2016-07-25

    A new prototype of a multi-frequency electrical impedance tomography system is presented. The system uses a field-programmable gate array as a main controller and is configured to measure at different frequencies simultaneously through a composite waveform. Both real and imaginary components of the data are computed for each frequency and sent to the personal computer over an ethernet connection, where both time-difference imaging and frequency-difference imaging are reconstructed and visualized. The system has been tested for both time-difference and frequency-difference imaging for diverse sets of frequency pairs in a resistive/capacitive test unit and in self-experiments. To our knowledge, this is the first work that shows preliminary frequency-difference images of in-vivo experiments. Results of time-difference imaging were compared with simulation results and shown that the new prototype performs well at all frequencies in the tested range of 60 kHz-960 kHz. For frequency-difference images, further development of algorithms and an improved normalization process is required to correctly reconstruct and interpreted the resulting images.

  4. Non-contact multi-frequency magnetic induction spectroscopy system for industrial-scale bio-impedance measurement

    NASA Astrophysics Data System (ADS)

    O'Toole, M. D.; Marsh, L. A.; Davidson, J. L.; Tan, Y. M.; Armitage, D. W.; Peyton, A. J.

    2015-03-01

    Biological tissues have a complex impedance, or bio-impedance, profile which changes with respect to frequency. This is caused by dispersion mechanisms which govern how the electromagnetic field interacts with the tissue at the cellular and molecular level. Measuring the bio-impedance spectra of a biological sample can potentially provide insight into the sample’s properties and its cellular structure. This has obvious applications in the medical, pharmaceutical and food-based industrial domains. However, measuring the bio-impedance spectra non-destructively and in a way which is practical at an industrial scale presents substantial challenges. The low conductivity of the sample requires a highly sensitive instrument, while the demands of industrial-scale operation require a fast high-throughput sensor of rugged design. In this paper, we describe a multi-frequency magnetic induction spectroscopy (MIS) system suitable for industrial-scale, non-contact, spectroscopic bio-impedance measurement over a bandwidth of 156 kHz-2.5 MHz. The system sensitivity and performance are investigated using calibration and known reference samples. It is shown to yield rapid and consistently sensitive results with good long-term stability. The system is then used to obtain conductivity spectra of a number of biological test samples, including yeast suspensions of varying concentration and a range of agricultural produce, such as apples, pears, nectarines, kiwis, potatoes, oranges and tomatoes.

  5. The Multi-Frequency Correlation Between Eua and sCER Futures Prices: Evidence from the Emd Approach

    NASA Astrophysics Data System (ADS)

    Zhang, Yue-Jun; Huang, Yi-Song

    2015-05-01

    Currently European Union Allowances (EUA) and secondary Certified Emission Reduction (sCER) have become two dominant carbon trading assets for investors and their linkage attracts much attention from academia and practitioners in recent years. Under this circumstance, we use the empirical mode decomposition (EMD) approach to decompose the two carbon futures contract prices and discuss their correlation from the multi-frequency perspective. The empirical results indicate that, first, the EUA and sCER futures price movements can be divided into those triggered by the long-term, medium-term and short-term market impacts. Second, the price movements in the EUA and sCER futures markets are primarily caused by the long-term impact, while the short-term impact can only explain a small fraction. Finally, the long-term (short-term) effect on EUA prices is statistically uncorrelated with the short-term (long-term) effect of sCER prices, and there is a medium or strong lead-and-lag correlation between the EUA and sCER price components with the same time scales. These results may provide some important insights of price forecast and arbitraging activities for carbon futures market investors, analysts and regulators.

  6. Effects of multi-frequency power ultrasound on the enzymolysis of corn gluten meal: Kinetics and thermodynamics study.

    PubMed

    Jin, Jian; Ma, Haile; Qu, Wenjuan; Wang, Kai; Zhou, Cunshan; He, Ronghai; Luo, Lin; Owusu, John

    2015-11-01

    The effects of multi-frequency power ultrasound (MPU) pretreatment on the kinetics and thermodynamics of corn gluten meal (CGM) were investigated in this research. The apparent constant (KM), apparent break-down rate constant (kA), reaction rate constants (k), energy of activation (Ea), enthalpy of activation (ΔH), entropy of activation (ΔS) and Gibbs free energy of activation (ΔG) were determined by means of the Michaelis-Menten equation, first-order kinetics model, Arrhenius equation and transition state theory, respectively. The results showed that MPU pretreatment can accelerate the enzymolysis of CGM under different enzymolysis conditions, viz. substrate concentration, enzyme concentration, pH, and temperature. Kinetics analysis revealed that MPU pretreatment decreased the KM value by 26.1% and increased the kA value by 7.3%, indicating ultrasound pretreatment increased the affinity between enzyme and substrate. In addition, the values of k for ultrasound pretreatment were increased by 84.8%, 41.9%, 28.9%, and 18.8% at the temperature of 293, 303, 313 and 323 K, respectively. For the thermodynamic parameters, ultrasound decreased Ea, ΔH and ΔS by 23.0%, 24.3% and 25.3%, respectively, but ultrasound had little change in ΔG value in the temperature range of 293-323 K. In conclusion, MPU pretreatment could remarkably enhance the enzymolysis of CGM, and this method can be applied to protein proteolysis industry to produce peptides.

  7. Continuous-scanning laser Doppler vibrometry: Extensions to arbitrary areas, multi-frequency and 3D capture

    NASA Astrophysics Data System (ADS)

    Weekes, B.; Ewins, D.; Acciavatti, F.

    2014-05-01

    To date, differing implementations of continuous scan laser Doppler vibrometry have been demonstrated by various academic institutions, but since the scan paths were defined using step or sine functions from function generators, the paths were typically limited to 1D line scans or 2D areas such as raster paths or Lissajous trajectories. The excitation was previously often limited to a single frequency due to the specific signal processing performed to convert the scan data into an ODS. In this paper, a configuration of continuous-scan laser Doppler vibrometry is demonstrated which permits scanning of arbitrary areas, with the benefit of allowing multi-frequency/broadband excitation. Various means of generating scan paths to inspect arbitrary areas are discussed and demonstrated. Further, full 3D vibration capture is demonstrated by the addition of a range-finding facility to the described configuration, and iteratively relocating a single scanning laser head. Here, the range-finding facility was provided by a Microsoft Kinect, an inexpensive piece of consumer electronics.

  8. Multi-frequency properties of synthetic blazar radio light curves within the shock-in-jet scenario

    NASA Astrophysics Data System (ADS)

    Fromm, C. M.; Fuhrmann, L.; Perucho, M.

    2015-08-01

    Context. Blazars are among the most powerful extragalactic objects as a sub-class of active galactic nuclei. They launch relativistic jets and their emitted radiation shows strong variability across the entire electro-magnetic spectrum. The mechanisms producing the variability are still controversial, and different models have been proposed to explain the observed variations in multi-frequency blazar light curves. Aims: We investigate the capabilities of the classical shock-in-jet model to explain and reconstruct the observed evolution of flares in the turnover frequency - turnover flux density (νm-Sm) plane and their frequency dependent light curve parameters. With a detailed parameter space study, we provide the framework for future, detailed comparisons of observed flare signatures with the shock-in-jet scenario. Methods: Based on the shock model, we compute synthetic single-dish light curves at different radio frequencies (2.6 to 345 GHz) and for different physical conditions in a conical jet (e.g. magnetic field geometry and Doppler factor). From those we extract the slopes of the different energy loss stages within the (νm-Sm) plane and deduce the frequency dependence of different light curve parameters, such as flare amplitude, time scale, and cross-band delays. Results: The evolution of the Doppler factor along the jet has the strongest influence on the evolution of the flare and on the frequency dependent light curve parameters. The synchrotron stage can be hidden in the Compton or in the adiabatic stage, depending mainly on the evolution of the Doppler factor, which makes it difficult to detect its signature in observations. In addition, we show that the time lags between different frequencies can be used as an efficient tool to better constrain the physical properties of these objects. Appendix A is available in electronic form at http://www.aanda.org

  9. Performance assessment of multi-frequency processing of ICU chest images for enhanced visualization of tubes and catheters

    NASA Astrophysics Data System (ADS)

    Wang, Xiaohui; Couwenhoven, Mary E.; Foos, David H.; Doran, James; Yankelevitz, David F.; Henschke, Claudia I.

    2008-03-01

    An image-processing method has been developed to improve the visibility of tube and catheter features in portable chest x-ray (CXR) images captured in the intensive care unit (ICU). The image-processing method is based on a multi-frequency approach, wherein the input image is decomposed into different spatial frequency bands, and those bands that contain the tube and catheter signals are individually enhanced by nonlinear boosting functions. Using a random sampling strategy, 50 cases were retrospectively selected for the study from a large database of portable CXR images that had been collected from multiple institutions over a two-year period. All images used in the study were captured using photo-stimulable, storage phosphor computed radiography (CR) systems. Each image was processed two ways. The images were processed with default image processing parameters such as those used in clinical settings (control). The 50 images were then separately processed using the new tube and catheter enhancement algorithm (test). Three board-certified radiologists participated in a reader study to assess differences in both detection-confidence performance and diagnostic efficiency between the control and test images. Images were evaluated on a diagnostic-quality, 3-megapixel monochrome monitor. Two scenarios were studied: the baseline scenario, representative of today's workflow (a single-control image presented with the window/level adjustments enabled) vs. the test scenario (a control/test image pair presented with a toggle enabled and the window/level settings disabled). The radiologists were asked to read the images in each scenario as they normally would for clinical diagnosis. Trend analysis indicates that the test scenario offers improved reading efficiency while providing as good or better detection capability compared to the baseline scenario.

  10. Rapid ambiguity resolution over medium-to-long baselines based on GPS/BDS multi-frequency observables

    NASA Astrophysics Data System (ADS)

    Gong, Xiaopeng; Lou, Yidong; Liu, Wanke; Zheng, Fu; Gu, Shengfeng; Wang, Hua

    2017-02-01

    Medium-long baseline RTK positioning generally needs a long initial time to find an accurate position due to non-negligible atmospheric delay residual. In order to shorten the initial or re-convergence time, a rapid phase ambiguity resolution method is employed based on GPS/BDS multi-frequency observables in this paper. This method is realized by two steps. First, double-differenced un-combined observables (i.e., L1/L2 and B1/B2/B3 observables) are used to obtain a float solution with atmospheric delay estimated as random walk parameter by using Kalman filter. This model enables an easy and consistent implementation for different systems and different frequency observables and can readily be extended to use more satellite navigation systems (e.g., Galileo, QZSS). Additional prior constraints for atmospheric information can be quickly added as well, because atmospheric delay is parameterized. Second, in order to fix ambiguity rapidly and reliably, ambiguities are divided into three types (extra-wide-lane (EWL), wide-lane (WL) and narrow-lane (NL)) according to their wavelengths and are to be fixed sequentially by using the LAMBDA method. Several baselines ranging from 61 km to 232 km collected by Trimble and Panda receivers are used to validate the method. The results illustrate that it only takes approximately 1, 2 and 6 epochs (30 s intervals) to fix EWL, WL and NL ambiguities, respectively. More epochs' observables are needed to fix WL and NL ambiguity around local time 14:00 than other time mainly due to more active ionosphere activity. As for the re-convergence time, the simulated results show that 90% of epochs can be fixed within 2 epochs by using prior atmospheric delay information obtained from previously 5 min. Finally, as for positioning accuracy, meter, decimeter and centimeter level positioning results are obtained according to different ambiguity resolution performances, i.e., EWL, WL and NL fixed solutions.

  11. Multi-frequency weak signal detection based on wavelet transform and parameter compensation band-pass multi-stable stochastic resonance

    NASA Astrophysics Data System (ADS)

    Han, Dongying; li, Pei; An, Shujun; Shi, Peiming

    2016-03-01

    In actual fault diagnosis, useful information is often submerged in heavy noise, and the feature information is difficult to extract. A novel weak signal detection method aimed at the problem of detecting multi-frequency signals buried under heavy background noise is proposed based on wavelet transform and parameter compensation band-pass multi-stable stochastic resonance (SR). First, the noisy signal is processed by parameter compensation, with the noise and system parameters expanded 10 times to counteract the effect of the damping term. The processed signal is decomposed into multiple signals of different scale frequencies by wavelet transform. Following this, we adjust the size of the scaled signals' amplitudes and reconstruct the signals; the weak signal frequency components are then enhanced by multi-stable stochastic resonance. The enhanced components of the signal are processed through a band-pass filter, leaving the enhanced sections of the signal. The processed signal is analyzed by FFT to achieve detection of the multi-frequency weak signals. The simulation and experimental results show that the proposed method can enhance the signal amplitude, can effectively detect multi-frequency weak signals buried under heavy noise and is valuable and usable for bearing fault signal analysis.

  12. A multi-frequency sparse hemispherical ultrasound phased array for microbubble-mediated transcranial therapy and simultaneous cavitation mapping.

    PubMed

    Deng, Lulu; O'Reilly, Meaghan A; Jones, Ryan M; An, Ran; Hynynen, Kullervo

    2016-12-21

    Focused ultrasound (FUS) phased arrays show promise for non-invasive brain therapy. However, the majority of them are limited to a single transmit/receive frequency and therefore lack the versatility to expose and monitor the treatment volume. Multi-frequency arrays could offer variable transmit focal sizes under a fixed aperture, and detect different spectral content on receive for imaging purposes. Here, a three-frequency (306, 612, and 1224 kHz) sparse hemispherical ultrasound phased array (31.8 cm aperture; 128 transducer modules) was constructed and evaluated for microbubble-mediated transcranial therapy and simultaneous cavitation mapping. The array is able to perform effective electronic beam steering over a volume spanning (-40, 40) and (-30, 50) mm in the lateral and axial directions, respectively. The focal size at the geometric center is approximately 0.9 (2.1) mm, 1.7 (3.9) mm, and 3.1 (6.5) mm in lateral (axial) pressure full width at half maximum (FWHM) at 1224, 612, and 306 kHz, respectively. The array was also found capable of dual-frequency excitation and simultaneous multi-foci sonication, which enables the future exploration of more complex exposure strategies. Passive acoustic mapping of dilute microbubble clouds demonstrated that the point spread function of the receive array has a lateral (axial) intensity FWHM between 0.8-3.5 mm (1.7-11.7 mm) over a volume spanning (-25, 25) mm in both the lateral and axial directions, depending on the transmit/receive frequency combination and the imaging location. The device enabled both half and second harmonic imaging through the intact skull, which may be useful for improving the contrast-to-tissue ratio or imaging resolution, respectively. Preliminary in vivo experiments demonstrated the system's ability to induce blood-brain barrier opening and simultaneously spatially map microbubble cavitation activity in a rat model. This work presents a tool to investigate optimal strategies for non

  13. A multi-frequency sparse hemispherical ultrasound phased array for microbubble-mediated transcranial therapy and simultaneous cavitation mapping

    NASA Astrophysics Data System (ADS)

    Deng, Lulu; O'Reilly, Meaghan A.; Jones, Ryan M.; An, Ran; Hynynen, Kullervo

    2016-12-01

    Focused ultrasound (FUS) phased arrays show promise for non-invasive brain therapy. However, the majority of them are limited to a single transmit/receive frequency and therefore lack the versatility to expose and monitor the treatment volume. Multi-frequency arrays could offer variable transmit focal sizes under a fixed aperture, and detect different spectral content on receive for imaging purposes. Here, a three-frequency (306, 612, and 1224 kHz) sparse hemispherical ultrasound phased array (31.8 cm aperture; 128 transducer modules) was constructed and evaluated for microbubble-mediated transcranial therapy and simultaneous cavitation mapping. The array is able to perform effective electronic beam steering over a volume spanning (-40, 40) and (-30, 50) mm in the lateral and axial directions, respectively. The focal size at the geometric center is approximately 0.9 (2.1) mm, 1.7 (3.9) mm, and 3.1 (6.5) mm in lateral (axial) pressure full width at half maximum (FWHM) at 1224, 612, and 306 kHz, respectively. The array was also found capable of dual-frequency excitation and simultaneous multi-foci sonication, which enables the future exploration of more complex exposure strategies. Passive acoustic mapping of dilute microbubble clouds demonstrated that the point spread function of the receive array has a lateral (axial) intensity FWHM between 0.8-3.5 mm (1.7-11.7 mm) over a volume spanning (-25, 25) mm in both the lateral and axial directions, depending on the transmit/receive frequency combination and the imaging location. The device enabled both half and second harmonic imaging through the intact skull, which may be useful for improving the contrast-to-tissue ratio or imaging resolution, respectively. Preliminary in vivo experiments demonstrated the system’s ability to induce blood-brain barrier opening and simultaneously spatially map microbubble cavitation activity in a rat model. This work presents a tool to investigate optimal strategies for non

  14. Design of smoothed multi-flared antenna for multi-frequency reception of direct transmission from meteorological satellites

    NASA Astrophysics Data System (ADS)

    Yasodha, Polisetti; Jayaraman, Achuthan; Kesarkar, Amit P.; Thawait, Prateek

    2016-07-01

    The direct radiance data assimilation is found to be advantageous for the numerical weather prediction over short and medium range. Therefore reception of satellite radiance in real time is important. Satellite earth station is the preferred choice for direct reception of this data, which is voluminous. High Rate Information being transmitted from these satellites operating in L, S, C and X bands needs to be received. A commercial wide band antenna is not preferred for such application, as it operates uniformly over the entire frequency range in these bands and may create interference over the unwanted frequencies. As the frequencies of interest occupy only a small portion of these bands, it is essential to design a horn antenna, which receives only specified frequencies and filter other frequencies. In this work, we have designed a multi-flare multi-frequency cylindrical horn antenna for reception of direct transmission from meteorological satellites. This earth station antenna tracks selected satellites working over specified frequency ranges, which are 1.694-1.703 GHz, 2.0-2.06 GHz, 4.5-4.6 GHz and 7.8-7.9 GHz in L, S, C and X bands respectively. Cylindrical waveguides for the frequencies, 1.6, 2, 4.5 and 8 GHz are designed and they are joined in the increasing order of radius with suitable conical shapes. The slope of the cones is adjusted experimentally. With this design, the return loss is simulated and found to be better than 20 dB upto 4.5 GHz and later it became poor. To overcome this difficulty, the abrupt transitions at the joints of the conical and cylindrical waveguides are made smoothen by increasing the diameter of one mouth of the cylinder and reducing the other mouth to match with the cylinders corresponding to next higher and lower frequency respectively. As a result, a smooth flared antenna is obtained and the simulated results are satisfactory. A parabolic reflector of 4 m diameter is designed and the smooth multi-flared antenna is kept at the

  15. Application of Multi-Frequency Modulation (MFM) for High-Speed Data Communications to a Voice Frequency Channel

    DTIC Science & Technology

    1990-06-01

    The Gray-encoded D16-QAM sig- nal constellation studied in this thesis is shown in Figure 5. As can be seen in the figure, this signal constellation... study should include the design and implementation of a PC expansion board that contains both a transmitter and receiver to allow testing of full-duplex...MFM communications on industry standard computers. Echo can- celling algorithms for MFM should be studied . Additionally, error control coding should

  16. MAGIC gamma-ray and multi-frequency observations of flat spectrum radio quasar PKS 1510-089 in early 2012

    NASA Astrophysics Data System (ADS)

    Aleksić, J.; Ansoldi, S.; Antonelli, L. A.; Antoranz, P.; Babic, A.; Bangale, P.; Barres de Almeida, U.; Barrio, J. A.; Becerra González, J.; Bednarek, W.; Bernardini, E.; Biland, A.; Blanch, O.; Bonnefoy, S.; Bonnoli, G.; Borracci, F.; Bretz, T.; Carmona, E.; Carosi, A.; Carreto Fidalgo, D.; Colin, P.; Colombo, E.; Contreras, J. L.; Cortina, J.; Covino, S.; Da Vela, P.; Dazzi, F.; De Angelis, A.; De Caneva, G.; De Lotto, B.; Delgado Mendez, C.; Doert, M.; Domínguez, A.; Dominis Prester, D.; Dorner, D.; Doro, M.; Einecke, S.; Eisenacher, D.; Elsaesser, D.; Farina, E.; Ferenc, D.; Fonseca, M. V.; Font, L.; Frantzen, K.; Fruck, C.; García López, R. J.; Garczarczyk, M.; Garrido Terrats, D.; Gaug, M.; Godinović, N.; González Muñoz, A.; Gozzini, S. R.; Hadasch, D.; Hayashida, M.; Herrera, J.; Herrero, A.; Hildebrand, D.; Hose, J.; Hrupec, D.; Idec, W.; Kadenius, V.; Kellermann, H.; Kodani, K.; Konno, Y.; Krause, J.; Kubo, H.; Kushida, J.; La Barbera, A.; Lelas, D.; Lewandowska, N.; Lindfors, E.; Lombardi, S.; López, M.; López-Coto, R.; López-Oramas, A.; Lorenz, E.; Lozano, I.; Makariev, M.; Mallot, K.; Maneva, G.; Mankuzhiyil, N.; Mannheim, K.; Maraschi, L.; Marcote, B.; Mariotti, M.; Martínez, M.; Mazin, D.; Menzel, U.; Meucci, M.; Miranda, J. M.; Mirzoyan, R.; Moralejo, A.; Munar-Adrover, P.; Nakajima, D.; Niedzwiecki, A.; Nilsson, K.; Nishijima, K.; Noda, K.; Nowak, N.; Orito, R.; Overkemping, A.; Paiano, S.; Palatiello, M.; Paneque, D.; Paoletti, R.; Paredes, J. M.; Paredes-Fortuny, X.; Partini, S.; Persic, M.; Prada, F.; Prada Moroni, P. G.; Prandini, E.; Preziuso, S.; Puljak, I.; Reinthal, R.; Rhode, W.; Ribó, M.; Rico, J.; Rodriguez Garcia, J.; Rügamer, S.; Saggion, A.; Saito, T.; Saito, K.; Satalecka, K.; Scalzotto, V.; Scapin, V.; Schultz, C.; Schweizer, T.; Shore, S. N.; Sillanpää, A.; Sitarek, J.; Snidaric, I.; Sobczynska, D.; Spanier, F.; Stamatescu, V.; Stamerra, A.; Steinbring, T.; Storz, J.; Strzys, M.; Sun, S.; Surić, T.; Takalo, L.; Takami, H.; Tavecchio, F.; Temnikov, P.; Terzić, T.; Tescaro, D.; Teshima, M.; Thaele, J.; Tibolla, O.; Torres, D. F.; Toyama, T.; Treves, A.; Uellenbeck, M.; Vogler, P.; Wagner, R. M.; Zandanel, F.; Zanin, R.; MAGIC Collaboration; Lucarelli, F.; Pittori, C.; Vercellone, S.; Verrecchia, F.; AGILE Collaboration; Buson, S.; D'Ammando, F.; Stawarz, L.; Giroletti, M.; Orienti, M.; Fermi-LAT Collaboration; Mundell, C.; Steele, I.; Zarpudin, B.; Raiteri, C. M.; Villata, M.; Sandrinelli, A.; Lähteenmäki, A.; Tammi, J.; Tornikoski, M.; Hovatta, T.; Readhead, A. C. S.; Max-Moerbeck, W.; Richards, J. L.; Jorstad, S.; Marscher, A.; Gurwell, M. A.; Larionov, V. M.; Blinov, D. A.; Konstantinova, T. S.; Kopatskaya, E. N.; Larionova, L. V.; Larionova, E. G.; Morozova, D. A.; Troitsky, I. S.; Mokrushina, A. A.; Pavlova, Yu. V.; Chen, W. P.; Lin, H. C.; Panwar, N.; Agudo, I.; Casadio, C.; Gómez, J. L.; Molina, S. N.; Kurtanidze, O. M.; Nikolashvili, M. G.; Kurtanidze, S. O.; Chigladze, R. A.; Acosta-Pulido, J. A.; Carnerero, M. I.; Manilla-Robles, A.; Ovcharov, E.; Bozhilov, V.; Metodieva, I.; Aller, M. F.; Aller, H. D.; Fuhrman, L.; Angelakis, E.; Nestoras, I.; Krichbaum, T. P.; Zensus, J. A.; Ungerechts, H.; Sievers, A.

    2014-09-01

    Aims: Amongst more than fifty blazars detected in very high energy (VHE, E> 100 GeV) γ rays, only three belong to the subclass of flat spectrum radio quasars (FSRQs). The detection of FSRQs in the VHE range is challenging, mainly because of their soft spectra in the GeV-TeV regime. MAGIC observed PKS 1510-089 (z = 0.36) starting 2012 February 3 until April 3 during a high activity state in the high energy (HE, E> 100 MeV) γ-ray band observed by AGILE and Fermi. MAGIC observations result in the detection of a source with significance of 6.0 standard deviations (σ). We study the multi-frequency behaviour of the source at the epoch of MAGIC observation, collecting quasi-simultaneous data at radio and optical (GASP-WEBT and F-Gamma collaborations, REM, Steward, Perkins, Liverpool, OVRO, and VLBA telescopes), X-ray (Swift satellite), and HE γ-ray frequencies. Methods: We study the VHE γ-ray emission, together with the multi-frequency light curves, 43 GHz radio maps, and spectral energy distribution (SED) of the source. The quasi-simultaneous multi-frequency SED from the millimetre radio band to VHE γ rays is modelled with a one-zone inverse Compton model. We study two different origins of the seed photons for the inverse Compton scattering, namely the infrared torus and a slow sheath surrounding the jet around the Very Long Baseline Array (VLBA) core. Results: We find that the VHE γ-ray emission detected from PKS 1510-089 in 2012 February-April agrees with the previous VHE observations of the source from 2009 March-April. We find no statistically significant variability during the MAGIC observations on daily, weekly, or monthly time scales, while the other two known VHE FSRQs (3C 279 and PKS 1222+216) have shown daily scale to sub-hour variability. The γ-ray SED combining AGILE, Fermi and MAGIC data joins smoothly and shows no hint of a break. The multi-frequency light curves suggest a common origin for the millimetre radio and HE γ-ray emission, and the HE

  17. A Multi-frequency analysis of dark matter annihilation interpretations of recent anti-particle and γ-ray excesses in cosmic structures

    NASA Astrophysics Data System (ADS)

    Beck, G.; Colafrancesco, S.

    2016-05-01

    The Fermi-LAT observation of a γ-ray excess from the galactic-centre, as well as the PAMELA, AMS, and AMS-2 anti-particle excesses, and the recent indications of a Fermi-LAT γ-ray excess in the Reticulum II dwarf galaxy have all been variously put forward as possible indirect signatures of supersymmetric neutralino dark matter. These are of particular interest as the neutralino annihilation models which fit these observations must have observable consequences across the frequency spectrum, from radio to γ-ray emission. Moreover, since dark matter is expected to be a major constituent of cosmic structure, these multi-frequency consequences should be common to such structures across the mass spectrum, from dwarf galaxies to galaxy clusters. Thus, in this work we make predictions for the multi-frequency spectra of three well-known sources dominated by dark matter on cluster, galaxy and dwarf galaxy scales, e.g. the Coma cluster, the galaxy M81, and the Draco dwarf galaxy, using models favoured by dark matter interpretations of the aforementioned observations. We pay special attention to the consequences for these models when their cross-sections are renormalised to reproduce the recent γ-ray excess observed in the Reticulum II dwarf galaxy, as well as using cross-sections from the Fermi-LAT dwarf galaxy limits, which throw a dark matter interpretation of this excess into doubt. We find that the multi-frequency data of Coma and Draco are in conflict with the dark matter interpretation of the AMS, PAMELA and Fermi positron excess. Additionally, models derived from Fermi-LAT galactic centre observations, and AMS-2 re-analysis, present similar but less extensive conflicts. Using the sensitivity projections for the Square Kilometre Array, the Cherenkov Telescope Array, as well as the ASTROGAM and ASTRO-H satellites, we determine the detection prospects for a subset of neutralino models that remain consistent with Planck cosmological constraints. Although the SKA has

  18. Detecting new γ-ray sources based on multi-frequency data the case of 1WHSPJ031423.9+061956

    SciTech Connect

    Arsioli, Bruno; Chang, Yu Ling

    2015-12-17

    We use the Fermi Science Tools in an attempt to unveil faint γ-ray blazars that may be above the threshold for detectability with Fermi-LAT and are not identified by automated methods. Our search for new sources in the 100MeV-300GeV band is mainly driven by the 1/2WHSP catalogs, which list high synchrotron peaked blazars expected to be emitters of VHE photons. Here we present the γ-ray detection of 1WHSP J031423.9+061956, modelling its high energy spectrum as a power law. We describe an example where multi-frequency selection, performed at much lower energies (from radio to X-ray), helps to pin-point a high energy source. The 1/2WHSP catalogs are built with the aim of providing a list of TeV targets for the VHE arrays of Cherenkov telescopes. Moreover, these catalogs provide useful seeds for identifying new high energy sources within the raw-data from Fermi. With the aid of multi-frequency data, we can explore the very high energy domain in greater details, improving the description of the γ-ray sky.

  19. ENCODE data at the ENCODE portal

    PubMed Central

    Sloan, Cricket A.; Chan, Esther T.; Davidson, Jean M.; Malladi, Venkat S.; Strattan, J. Seth; Hitz, Benjamin C.; Gabdank, Idan; Narayanan, Aditi K.; Ho, Marcus; Lee, Brian T.; Rowe, Laurence D.; Dreszer, Timothy R.; Roe, Greg; Podduturi, Nikhil R.; Tanaka, Forrest; Hong, Eurie L.; Cherry, J. Michael

    2016-01-01

    The Encyclopedia of DNA Elements (ENCODE) Project is in its third phase of creating a comprehensive catalog of functional elements in the human genome. This phase of the project includes an expansion of assays that measure diverse RNA populations, identify proteins that interact with RNA and DNA, probe regions of DNA hypersensitivity, and measure levels of DNA methylation in a wide range of cell and tissue types to identify putative regulatory elements. To date, results for almost 5000 experiments have been released for use by the scientific community. These data are available for searching, visualization and download at the new ENCODE Portal (www.encodeproject.org). The revamped ENCODE Portal provides new ways to browse and search the ENCODE data based on the metadata that describe the assays as well as summaries of the assays that focus on data provenance. In addition, it is a flexible platform that allows integration of genomic data from multiple projects. The portal experience was designed to improve access to ENCODE data by relying on metadata that allow reusability and reproducibility of the experiments. PMID:26527727

  20. Multi-frequency inversion-charge pumping for charge separation and mobility analysis in high-k/InGaAs metal-oxide-semiconductor field-effect transistors

    SciTech Connect

    Djara, V.; Cherkaoui, K.; Negara, M. A.; Hurley, P. K.

    2015-11-28

    An alternative multi-frequency inversion-charge pumping (MFICP) technique was developed to directly separate the inversion charge density (N{sub inv}) from the trapped charge density in high-k/InGaAs metal-oxide-semiconductor field-effect transistors (MOSFETs). This approach relies on the fitting of the frequency response of border traps, obtained from inversion-charge pumping measurements performed over a wide range of frequencies at room temperature on a single MOSFET, using a modified charge trapping model. The obtained model yielded the capture time constant and density of border traps located at energy levels aligned with the InGaAs conduction band. Moreover, the combination of MFICP and pulsed I{sub d}-V{sub g} measurements enabled an accurate effective mobility vs N{sub inv} extraction and analysis. The data obtained using the MFICP approach are consistent with the most recent reports on high-k/InGaAs.

  1. Multi-Frequency and Multi-Polarization Study on SAR-Based Coastal AReas Characterization: The Case of the Yellow River Delta

    NASA Astrophysics Data System (ADS)

    Buono, Andrea; Nunziata, Ferdinando; Migliaccio, Maurizio; Li, Xiaofeng; Shen, Dongliang; Ding, Xianwen

    2016-08-01

    The Yellow River is the most sediment-filled river and the sixth-longest one in the world. It is of paramount importance for safe navigation, local economy and environment due to the presence of floods, farms, aquacultures and pollution. Further, the Yellow River delta is characterized by several physical phenomena due to both natural and anthropogenic processes: sedimentation, erosion, floods, pollution, etc.In this study, actual partially-overlapped L-/C-band fully- polarimetric (FP) synthetic aperture radar (SAR) data are used to investigate the scattering properties of the Yellow River delta, whose very complex area is characterized by different environments as recorded by ground truth data acquired during a ship-based in-situ campaign. Preliminary results witness that multi-polarization and multi-frequency SAR measurements allow inferring more physical information in such a complex environment that can be used as starting point for developing ad hoc classification algorithms.

  2. A glimpse beneath Antarctic sea ice: observation of platelet-layer thickness and ice-volume fraction with multi-frequency EM

    NASA Astrophysics Data System (ADS)

    Hendricks, S.; Hoppmann, M.; Hunkeler, P. A.; Kalscheuer, T.; Gerdes, R.

    2015-12-01

    In Antarctica, ice crystals (platelets) form and grow in supercooled waters below ice shelves. These platelets rise and accumulate beneath nearby sea ice to form a several meter thick sub-ice platelet layer. This special ice type is a unique habitat, influences sea-ice mass and energy balance, and its volume can be interpreted as an indicator for ice - ocean interactions. Although progress has been made in determining and understanding its spatio-temporal variability based on point measurements, an investigation of this phenomenon on a larger scale remains a challenge due to logistical constraints and a lack of suitable methodology. In the present study, we applied a lateral constrained Marquardt-Levenberg inversion to a unique multi-frequency electromagnetic (EM) induction sounding dataset obtained on the ice-shelf influenced fast-ice regime of Atka Bay, eastern Weddell Sea. We adapted the inversion algorithm to incorporate a sensor specific signal bias, and confirmed the reliability of the algorithm by performing a sensitivity study using synthetic data. We inverted the field data for sea-ice and sub-ice platelet-layer thickness and electrical conductivity, and calculated ice-volume fractions from platelet-layer conductivities using Archie's Law. The thickness results agreed well with drill-hole validation datasets within the uncertainty range, and the ice-volume fraction also yielded plausible results. Our findings imply that multi-frequency EM induction sounding is a suitable approach to efficiently map sea-ice and platelet-layer properties. However, we emphasize that the successful application of this technique requires a break with traditional EM sensor calibration strategies due to the need of absolute calibration with respect to a physical forward model.

  3. Nutritional status evaluated by multi-frequency bioimpedance is not associated with quality of life or depressive symptoms in hemodialysis patients.

    PubMed

    Barros, Annerose; da Costa, Bartira E Pinheiro; Poli-de-Figueiredo, Carlos E; Antonello, Ivan C; d'Avila, Domingos O

    2011-02-01

    Hemodialysis therapy significantly impacts on patients' physical, psychological, and social performances. Such reduced quality of life depends on several factors, such as malnutrition, depression, and metabolic derangements. This study aims to evaluate the current nutritional status, quality of life and depressive symptoms, and determine the possible relationships with other risk factors for poor outcomes, in stable hemodialysis patients. This was a single-center, cross-sectional study that enrolled 59 adult patients undergoing hemodialysis. Laboratory tests that included high-sensitivity c-reactive protein (CRP), and quality of life and depressive symptom evaluation, as well as malnutrition-inflammation score, nutritional status and body composition (by direct segmental multi-frequency bioimpedance analysis) determinations were performed. Patients were classified as "underfat", "standard", "overfat", or "obese" by multi-frequency bioimpedance analysis. Seven patients were underfat, 19 standard, 19 overfat, and 14 obese. Triglyceride levels significantly differed between the underfat, standard, overfat, and obese groups (1.06 [0.98-1.98]; 1.47 [1.16-1.67]; 2.53 [1.17-3.13]; 2.12 [1.41-2.95] mmol/L, respectively; P=0.026), as did Kt/V between the underfat, overfat, and obese groups (1.49 ± 0.14; 1.23 ± 0.19; 1.19 ± 0.22; P=0.015 and P=0.006, respectively). Depressive symptoms, quality of life, and CRP and phosphate levels did not diverge among nutritional groups. Creatinine, albumin, and phosphate strongly correlated, as well as percent body fat, body mass index, and waist circumference (r=0.859 [P<0.001], and r=0.716 [P<0.001], respectively). Depressive symptoms and physical and psychological quality-of-life domains also strongly correlated (r(s) = -0.501 [P<0.001], r(s) = -0.597 [P<0.001], respectively). The majority of patients were overfat or obese and very few underfat. Inflammation was prevalent, overall. No association of nutritional status with

  4. Miniaturised optical encoder

    NASA Astrophysics Data System (ADS)

    Carr, John; Desmulliez, Marc P. Y.; Weston, Nick; McKendrick, David; Cunningham, Graeme; McFarland, Geoff; Meredith, Wyn; McKee, Andrew; Langton, Conrad; Eddie, Iain

    2008-08-01

    Optical encoders are pervasive in many sectors of industry including metrology, motion systems, electronics, medical, scanning/ printing, scientific instruments, space research and specialist machine tools. The precision of automated manufacture and assembly has been revolutionised by the adoption of optical diffractive measurement methods. Today's optical encoders comprise discrete components: light source(s), reference and analyser gratings, and a photodiode array that utilise diffractive optic methods to achieve high resolution. However the critical alignment requirements between the optical gratings and to the photodiode array, the bulky nature of the encoder devices and subsequent packaging mean that optical encoders can be prohibitively expensive for many applications and unsuitable for others. We report here on the design, manufacture and test of a miniaturised optical encoder to be used in precision measurement systems. Microsystems manufacturing techniques facilitate the monolithic integration of the traditional encoder components onto a single compound semiconductor chip, radically reducing the size, cost and set-up time. Fabrication of the gratings at the wafer level, by standard photo-lithography, allows for the simultaneous alignment of many devices in a single process step. This development coupled with a unique photodiode configuration not only provides increased performance but also significantly improves the alignment tolerances in both manufacture and set-up. A National Research and Development Corporation type optical encoder chip has been successfully demonstrated under test conditions on both amplitude and phase scales with pitches of 20 micron, 8 micron and 4 micron, showing significantly relaxed alignment tolerances with signal-to-noise ratios greater than 60:1. Various reference mark schemes have also been investigated. Results are presented here.

  5. A tailored multi-frequency EPR approach to accurately determine the magnetic resonance parameters of dynamic nuclear polarization agents: application to AMUPol.

    PubMed

    Gast, P; Mance, D; Zurlo, E; Ivanov, K L; Baldus, M; Huber, M

    2017-02-01

    To understand the dynamic nuclear polarization (DNP) enhancements of biradical polarizing agents, the magnetic resonance parameters need to be known. We describe a tailored EPR approach to accurately determine electron spin-spin coupling parameters using a combination of standard (9 GHz), high (95 GHz) and ultra-high (275 GHz) frequency EPR. Comparing liquid- and frozen-solution continuous-wave EPR spectra provides accurate anisotropic dipolar interaction D and isotropic exchange interaction J parameters of the DNP biradical AMUPol. We found that D was larger by as much as 30% compared to earlier estimates, and that J is 43 MHz, whereas before it was considered to be negligible. With the refined data, quantum mechanical calculations confirm that an increase in dipolar electron-electron couplings leads to higher cross-effect DNP efficiencies. Moreover, the DNP calculations qualitatively reproduce the difference of TOTAPOL and AMUPol DNP efficiencies found experimentally and suggest that AMUPol is particularly effective in improving the DNP efficiency at magnetic fields higher than 500 MHz. The multi-frequency EPR approach will aid in predicting the optimal structures for future DNP agents.

  6. Wearable Multi-Frequency and Multi-Segment Bioelectrical Impedance Spectroscopy for Unobtrusively Tracking Body Fluid Shifts during Physical Activity in Real-Field Applications: A Preliminary Study

    PubMed Central

    Villa, Federica; Magnani, Alessandro; Maggioni, Martina A.; Stahn, Alexander; Rampichini, Susanna; Merati, Giampiero; Castiglioni, Paolo

    2016-01-01

    Bioelectrical Impedance Spectroscopy (BIS) allows assessing the composition of body districts noninvasively and quickly, potentially providing important physiological/clinical information. However, neither portable commercial instruments nor more advanced wearable prototypes simultaneously satisfy the demanding needs of unobtrusively tracking body fluid shifts in different segments simultaneously, over a broad frequency range, for long periods and with high measurements rate. These needs are often required to evaluate exercise tests in sports or rehabilitation medicine, or to assess gravitational stresses in aerospace medicine. Therefore, the aim of this work is to present a new wearable prototype for monitoring multi-segment and multi-frequency BIS unobtrusively over long periods. Our prototype guarantees low weight, small size and low power consumption. An analog board with current-injecting and voltage-sensing electrodes across three body segments interfaces a digital board that generates square-wave current stimuli and computes impedance at 10 frequencies from 1 to 796 kHz. To evaluate the information derivable from our device, we monitored the BIS of three body segments in a volunteer before, during and after physical exercise and postural shift. We show that it can describe the dynamics of exercise-induced changes and the effect of a sit-to-stand maneuver in active and inactive muscular districts separately and simultaneously. PMID:27187389

  7. Design of a New Built-in UHF Multi-Frequency Antenna Sensor for Partial Discharge Detection in High-Voltage Switchgears

    PubMed Central

    Zhang, Xiaoxing; Cheng, Zheng; Gui, Yingang

    2016-01-01

    In this study a new built-in ultrahigh frequency (UHF) antenna sensor was designed and applied in a high-voltage switchgear for partial discharge (PD) detection. The casing of the switchgear was initially used as the ground plane of the antenna sensor, which integrated the sensor into the high-voltage switchgear. The Koch snowflake patch was adopted as the radiation patch of the antenna to overcome the disadvantages of common microstrip antennas, and the feed position and the dielectric layer thickness were simulated in detail. Simulation results show that the antenna sensor possessed four resonant points with good impedance matching from 300 MHz to 1000 MHz, and it also presented good multi-frequency performance in the entire working frequency band. PD detection experiments were conducted in the high-voltage switchgear, and the fabricated antenna sensor was effectively built into the high-voltage switchgear. In order to reflect the advantages of the built-in antenna sensor, another external UHF antenna sensor was used as a comparison to simultaneously detect PD. Experimental results demonstrated that the built-in antenna sensor possessed high detection sensitivity and strong anti-interference capacity, which ensured the practicability of the design. In addition, it had more high-voltage switchgear PD detection advantages than the external sensor. PMID:27472331

  8. Non-contact characterization of hybrid aluminium/carbon-fibre-reinforced plastic sheets using multi-frequency eddy-current sensors

    NASA Astrophysics Data System (ADS)

    Yin, W.; Li, X.; Withers, P. J.; Peyton, A. J.

    2010-10-01

    The characterization of hybrid aluminium/carbon-fibre-reinforced plastic (CFRP) sheets using multi-frequency eddy-current sensors is presented in this paper. Both air-cored circular sensors and highly directional ferrite-cored sensors are designed for bulk conductivity measurements and directionality characterization. An analytical model describing the interaction of the circular sensors with the hybrid planar structure is developed. Finite element (FE) models that take into account the anisotropicity of CFRP have also been proposed. Both models are in good agreement with experimental results. The features of the sensor output signals are analysed and explained. It is proved that an anisotropic model (tensor expression for conductivity) is appropriate for the CFRP materials under investigation. A formula to link the bulk conductivity with the conductivity tensor is proposed and verified. Lift-off effects are also discussed. It is believed that this is amongst the first published reports of using eddy-current techniques for characterizing the hybrid aluminium/CFRP material.

  9. Wearable Multi-Frequency and Multi-Segment Bioelectrical Impedance Spectroscopy for Unobtrusively Tracking Body Fluid Shifts during Physical Activity in Real-Field Applications: A Preliminary Study.

    PubMed

    Villa, Federica; Magnani, Alessandro; Maggioni, Martina A; Stahn, Alexander; Rampichini, Susanna; Merati, Giampiero; Castiglioni, Paolo

    2016-05-11

    Bioelectrical Impedance Spectroscopy (BIS) allows assessing the composition of body districts noninvasively and quickly, potentially providing important physiological/clinical information. However, neither portable commercial instruments nor more advanced wearable prototypes simultaneously satisfy the demanding needs of unobtrusively tracking body fluid shifts in different segments simultaneously, over a broad frequency range, for long periods and with high measurements rate. These needs are often required to evaluate exercise tests in sports or rehabilitation medicine, or to assess gravitational stresses in aerospace medicine. Therefore, the aim of this work is to present a new wearable prototype for monitoring multi-segment and multi-frequency BIS unobtrusively over long periods. Our prototype guarantees low weight, small size and low power consumption. An analog board with current-injecting and voltage-sensing electrodes across three body segments interfaces a digital board that generates square-wave current stimuli and computes impedance at 10 frequencies from 1 to 796 kHz. To evaluate the information derivable from our device, we monitored the BIS of three body segments in a volunteer before, during and after physical exercise and postural shift. We show that it can describe the dynamics of exercise-induced changes and the effect of a sit-to-stand maneuver in active and inactive muscular districts separately and simultaneously.

  10. Design of a New Built-in UHF Multi-Frequency Antenna Sensor for Partial Discharge Detection in High-Voltage Switchgears.

    PubMed

    Zhang, Xiaoxing; Cheng, Zheng; Gui, Yingang

    2016-07-26

    In this study a new built-in ultrahigh frequency (UHF) antenna sensor was designed and applied in a high-voltage switchgear for partial discharge (PD) detection. The casing of the switchgear was initially used as the ground plane of the antenna sensor, which integrated the sensor into the high-voltage switchgear. The Koch snowflake patch was adopted as the radiation patch of the antenna to overcome the disadvantages of common microstrip antennas, and the feed position and the dielectric layer thickness were simulated in detail. Simulation results show that the antenna sensor possessed four resonant points with good impedance matching from 300 MHz to 1000 MHz, and it also presented good multi-frequency performance in the entire working frequency band. PD detection experiments were conducted in the high-voltage switchgear, and the fabricated antenna sensor was effectively built into the high-voltage switchgear. In order to reflect the advantages of the built-in antenna sensor, another external UHF antenna sensor was used as a comparison to simultaneously detect PD. Experimental results demonstrated that the built-in antenna sensor possessed high detection sensitivity and strong anti-interference capacity, which ensured the practicability of the design. In addition, it had more high-voltage switchgear PD detection advantages than the external sensor.

  11. Time-Encoded Imagers.

    SciTech Connect

    Marleau, Peter; Brubaker, Erik

    2014-11-01

    This report provides a short overview of the DNN R&D funded project, Time-Encoded Imagers. The project began in FY11 and concluded in FY14. The Project Description below provides the overall motivation and objectives for the project as well as a summary of programmatic direction. It is followed by a short description of each task and the resulting deliverables.

  12. Video time encoding machines.

    PubMed

    Lazar, Aurel A; Pnevmatikakis, Eftychios A

    2011-03-01

    We investigate architectures for time encoding and time decoding of visual stimuli such as natural and synthetic video streams (movies, animation). The architecture for time encoding is akin to models of the early visual system. It consists of a bank of filters in cascade with single-input multi-output neural circuits. Neuron firing is based on either a threshold-and-fire or an integrate-and-fire spiking mechanism with feedback. We show that analog information is represented by the neural circuits as projections on a set of band-limited functions determined by the spike sequence. Under Nyquist-type and frame conditions, the encoded signal can be recovered from these projections with arbitrary precision. For the video time encoding machine architecture, we demonstrate that band-limited video streams of finite energy can be faithfully recovered from the spike trains and provide a stable algorithm for perfect recovery. The key condition for recovery calls for the number of neurons in the population to be above a threshold value.

  13. Plasmids encoding therapeutic agents

    DOEpatents

    Keener, William K.

    2007-08-07

    Plasmids encoding anti-HIV and anti-anthrax therapeutic agents are disclosed. Plasmid pWKK-500 encodes a fusion protein containing DP178 as a targeting moiety, the ricin A chain, an HIV protease cleavable linker, and a truncated ricin B chain. N-terminal extensions of the fusion protein include the maltose binding protein and a Factor Xa protease site. C-terminal extensions include a hydrophobic linker, an L domain motif peptide, a KDEL ER retention signal, another Factor Xa protease site, an out-of-frame buforin II coding sequence, the lacZ.alpha. peptide, and a polyhistidine tag. More than twenty derivatives of plasmid pWKK-500 are described. Plasmids pWKK-700 and pWKK-800 are similar to pWKK-500 wherein the DP178-encoding sequence is substituted by RANTES- and SDF-1-encoding sequences, respectively. Plasmid pWKK-900 is similar to pWKK-500 wherein the HIV protease cleavable linker is substituted by a lethal factor (LF) peptide-cleavable linker.

  14. Genetically-encoded Reporters

    NASA Astrophysics Data System (ADS)

    Isacoff, Ehud

    2002-03-01

    One of the principle goals of neuroscience has been to understand the cellular basis of information processing and the plasticity that underlies learning and memory. Efforts in this area have mainly relied on electrical recording and optical imaging with chemical dyes. Over the last few years we and others have begun to develop genetically-encoded optical reporter "dyes" which should provide several important advantages over the classical methods for monitoring signal transmission in the nervous system. The advantages are that genetically-encoded reporters can be molecularly targeted a) to specific cell types via cell-specific promoters, and b) to specific subcellular compartments by peptides that are recognized by the protein sorting machinery of the cell. This makes it possible, in principle, to exclude signals from non-neuronal cells and to visualize selectively, in a brain region that contains many cell types with numerous kinds of synaptic connections, the activity of specific types of neurons (e.g. GABAergic interneurons) and specific synaptic elements (e.g. nerve terminals or dendrites), something that has hitherto not been possible. An additional advantage is that protein reporters may be rationally and irrationally "tuned" with mutations in functional domains known to control their dynamic range of operation. The general idea behind genetically-encoded reporters of cell signaling is to encode a protein that is either intrinsically fluorescent, or that can be labeled orthogonally with a fluorescent probe, and where the physiological signal changes fluorescence emission. I will describe recent progress employing both kinds of approaches.

  15. Field application of a multi-frequency acoustic instrument to monitor sediment for silt erosion study in Pelton turbine in Himalayan region, India

    NASA Astrophysics Data System (ADS)

    Rai, A. K.; Kumar, A.; Hies, T.; Nguyen, H. H.

    2016-11-01

    High sediment load passing through hydropower components erodes the hydraulic components resulting in loss of efficiency, interruptions in power production and downtime for repair/maintenance, especially in Himalayan regions. The size and concentration of sediment play a major role in silt erosion. The traditional process of collecting samples manually to analyse in laboratory cannot suffice the need of monitoring temporal variation in sediment properties. In this study, a multi-frequency acoustic instrument was applied at desilting chamber to monitor sediment size and concentration entering the turbine. The sediment size and concentration entering the turbine were also measured with manual samples collected twice daily. The samples collected manually were analysed in laboratory with a laser diffraction instrument for size and concentration apart from analysis by drying and filtering methods for concentration. A conductivity probe was used to calculate total dissolved solids, which was further used in results from drying method to calculate suspended solid content of the samples. The acoustic instrument was found to provide sediment concentration values similar to drying and filtering methods. However, no good match was found between mean grain size from the acoustic method with the current status of development and laser diffraction method in the first field application presented here. The future versions of the software and significant sensitivity improvements of the ultrasonic transducers are expected to increase the accuracy in the obtained results. As the instrument is able to capture the concentration and in the future most likely more accurate mean grain size of the suspended sediments, its application for monitoring silt erosion in hydropower plant shall be highly useful.

  16. Comparison of multi-frequency bioimpedance with perometry for the early detection and intervention of lymphoedema after axillary node clearance for breast cancer.

    PubMed

    Bundred, Nigel J; Stockton, Charlotte; Keeley, Vaughan; Riches, Katie; Ashcroft, Linda; Evans, Abigail; Skene, Anthony; Purushotham, Arnie; Bramley, Maria; Hodgkiss, Tracey

    2015-05-01

    The importance of early detection of lymphoedema by arm volume measurements before surgery and repeated measurements after surgery in women undergoing axillary node clearance (ANC) in order to enable early intervention is recognised. A prospective multi-centre study was performed which studied the difference between multi-frequency bioimpedance electrical analysis (BIS) and perometer arm measurement in predicting the development of lymphoedema. Women undergoing ANC underwent pre-operative and regular post-operative measurements of arm volume by both methods. The primary endpoint is the incidence of lymphoedema (≥10 % arm volume increase compared to contralateral arm by perometer) at 2 and 5 years after ANC. The threshold for intervention in lymphoedema was also assessed. Out of 964 patients recruited, 612 had minimum 6 months follow-up data. Using 1-month post-operative measurements as baseline, perometer detected 31 patients with lymphoedema by 6 months (BIS detected 53). By 6 months, 89 % of those with no lymphoedema reported at least one symptom. There was moderate correlation between perometer and BIS at 3 months (r = 0.40) and 6 months (r = 0.60), with a sensitivity of 73 % and specificity of 84 %. Univariate and multivariate analyses revealed a threshold for early intervention of ≥5 to <10 % (p = 0.03). Threshold for early intervention to prevent progression to lymphoedema is ≥5 to <10 % but symptoms alone do not predict lymphoedema. The modest correlation between methods at 6 months indicates arm volume measurements remain gold standard, although longer term follow-up is required.

  17. The F-GAMMA programme: multi-frequency study of active galactic nuclei in the Fermi era. Programme description and the first 2.5 years of monitoring

    NASA Astrophysics Data System (ADS)

    Fuhrmann, L.; Angelakis, E.; Zensus, J. A.; Nestoras, I.; Marchili, N.; Pavlidou, V.; Karamanavis, V.; Ungerechts, H.; Krichbaum, T. P.; Larsson, S.; Lee, S. S.; Max-Moerbeck, W.; Myserlis, I.; Pearson, T. J.; Readhead, A. C. S.; Richards, J. L.; Sievers, A.; Sohn, B. W.

    2016-11-01

    Context. To fully exploit the scientific potential of the Fermi mission for the physics of active galactic nuclei (AGN), we initiated the F-GAMMA programme. Between 2007 and 2015 the F-GAMMA was the prime provider of complementary multi-frequency monitoring in the radio regime. Aims: We quantify the radio variability of γ-ray blazars. We investigate its dependence on source class and examine whether the radio variability is related to the γ-ray loudness. Finally, we assess the validity of a putative correlation between the two bands. Methods: The F-GAMMA performed monthly monitoring of a sample of about 60 sources at up to twelve radio frequencies between 2.64 and 228.39 GHz. We perform a time series analysis on the first 2.5-yr data set to obtain variability parameters. A maximum likelihood analysis is used to assess the significance of a correlation between radio and γ-ray fluxes. Results: We present light curves and spectra (coherent within ten days) obtained with the Effelsberg 100 m and IRAM 30 m telescopes. All sources are variable across all frequency bands with amplitudes increasing with frequency up to rest frame frequencies of around 60-80 GHz as expected by shock-in-jet models. Compared to flat-spectrum radio quasars (FSRQs), BL Lacertae objects (BL Lacs) show systematically lower variability amplitudes, brightness temperatures, and Doppler factors at lower frequencies, while the difference vanishes towards higher ones. The time scales appear similar for the two classes. The distribution of spectral indices appears flatter or more inverted at higher frequencies for BL Lacs. Evolving synchrotron self-absorbed components can naturally account for the observed spectral variability. We find that the Fermi-detected sources show larger variability amplitudes, brightness temperatures, and Doppler factors than non-detected ones. Flux densities at 86.2 and 142.3 GHz correlate with 1 GeV fluxes at a significance level better than 3σ, implying that γ rays are

  18. Deep multi-frequency radio imaging in the Lockman Hole using the GMRT and VLA - I. The nature of the sub-mJy radio population

    NASA Astrophysics Data System (ADS)

    Ibar, Edo; Ivison, R. J.; Biggs, A. D.; Lal, D. V.; Best, P. N.; Green, D. A.

    2009-07-01

    In the run up to routine observations with the upcoming generation of radio facilities, the nature of sub-mJy radio population has been hotly debated. Here, we describe multi-frequency data designed to probe the emission mechanism that dominates in these faint radio sources. Our analysis is based on observations of the Lockman Hole using the Giant Metrewave Radio Telescope (GMRT) - the deepest 610-MHz imaging yet reported - together with 1.4-GHz imaging from the Very Large Array (VLA), well matched in resolution and sensitivity to the GMRT data: σ610MHz ~ 15μJybeam-1, σ1.4GHz ~ 6μJybeam-1, full width at half-maximum (FWHM) ~ 5arcsec. The GMRT and VLA data are cross-matched to obtain the radio spectral indices for the faint radio emitters. Statistical analyses show no clear evolution for the median spectral index, α610MHz1.4GHz (where Sν ~ να), as a function of flux density. α610MHz1.4GHz is found to be approximately -0.6 to -0.7, based on an almost unbiased 10σ criterion, down to a flux level of S1.4GHz >~100μJy. The fraction of inverted spectrum sources (α610MHz1.4GHz > 0) is less than 10 per cent. The results suggest that the most prevalent emission mechanism in the sub-mJy regime is optically thin synchrotron, ruling out a dominant flat spectrum or ultra-steep spectrum radio population. The spectral index distribution has a significant scatter, Δα ~ 0.4-0.5, which suggests a mixture of different populations at all flux levels. Spectroscopic classification of radio sources with X-ray emission has allowed us to estimate that the fraction of radio-quiet active galactic nuclei (AGN) at 30μJy <~ S1.4GHz <300μJy is roughly 25 +/- 10 per cent, suggesting that star-forming galaxies dominate the sub-mJy regime.

  19. A Multi-Frequency Study of an X-ray Selected Sample of AGN II: Line Emission Studies and the X-ray Luminosity Function

    NASA Astrophysics Data System (ADS)

    Grossan, B.; Remillard, R.; Bradt, H.

    1992-12-01

    We carried out a multi-frequency study of a flux-limited (0.95 mu Jy @ 5 keV) sample of 96 emission-line AGN taken from the HEAO-1 LASS/MC survey. Preliminary results of this study were presented at the Jan. 1992 meeting. Here we present new results from line emission and continuum studies and more details regarding the AGN X-ray luminosity functions (XLFs). We find that narrow [OIII] flux correlates well with X-ray flux. This result is consistent with a simple picture where the photoionizing continuum is distributed over a large solid angle in the narrow line region, and is closely related to the X-ray continuum. Broad Balmer lines do not demonstrate a strong correlation with X-ray flux. The UV continuum ( ~ 1400 Angstroms) does not correlate with any optical line emission we measured, but UV variability could have affected this result. In contrast, we find very strong correlations of high-ionization UV broad line fluxes and the simultaneously measured UV continuum. The geometry and/or obscuration effects in the broad line region may therefore be different than those in the narrow line region. A very large spread in the value of broad line Balmer decrements (Hβ /Hα = 0.13 - 0.40) was observed among objects determined to be un-reddened by the lack of an absorption feature at 2175 Angstroms. If there were an intrinsic Balmer decrement for the broad line regions in AGN, the smallest Hβ /Hα values would correspond to extreme values of reddening (E(B-V) > 1 mag). Therefore, we conclude that the broad line Balmer decrement cannot be used in determining continuum reddening in most AGN. We find that the AGN 2-10 keV XLF is roughly a power law, but steepens with increasing luminosity, and turns over below 10(42) erg s(-1) . The XLF of Seyfert 2's resembles a power law from 10(42) - 10(43.5) erg s(-1) , but at higher luminosity, the XLF steepens. In this sample, the cumulative fraction of Seyfert 2's falls rapidly with luminosity, and the overall fraction of Seyfert 2's

  20. Time encoded radiation imaging

    DOEpatents

    Marleau, Peter; Brubaker, Erik; Kiff, Scott

    2014-10-21

    The various technologies presented herein relate to detecting nuclear material at a large stand-off distance. An imaging system is presented which can detect nuclear material by utilizing time encoded imaging relating to maximum and minimum radiation particle counts rates. The imaging system is integrated with a data acquisition system that can utilize variations in photon pulse shape to discriminate between neutron and gamma-ray interactions. Modulation in the detected neutron count rates as a function of the angular orientation of the detector due to attenuation of neighboring detectors is utilized to reconstruct the neutron source distribution over 360 degrees around the imaging system. Neutrons (e.g., fast neutrons) and/or gamma-rays are incident upon scintillation material in the imager, the photons generated by the scintillation material are converted to electrical energy from which the respective neutrons/gamma rays can be determined and, accordingly, a direction to, and the location of, a radiation source identified.

  1. Rotary encoding device

    NASA Technical Reports Server (NTRS)

    Leviton, Douglas B. (Inventor)

    1993-01-01

    A device for position encoding of a rotating shaft in which a polygonal mirror having a number of facets is mounted to the shaft and a light beam is directed towards the facets is presented. The facets of the polygonal mirror reflect the light beam such that a light spot is created on a linear array detector. An analog-to-digital converter is connected to the linear array detector for reading the position of the spot on the linear array detector. A microprocessor with memory is connected to the analog-to-digital converter to hold and manipulate the data provided by the analog-to-digital converter on the position of the spot and to compute the position of the shaft based upon the data from the analog-to-digital converter.

  2. Linear encoding device

    NASA Technical Reports Server (NTRS)

    Leviton, Douglas B. (Inventor)

    1993-01-01

    A Linear Motion Encoding device for measuring the linear motion of a moving object is disclosed in which a light source is mounted on the moving object and a position sensitive detector such as an array photodetector is mounted on a nearby stationary object. The light source emits a light beam directed towards the array photodetector such that a light spot is created on the array. An analog-to-digital converter, connected to the array photodetector is used for reading the position of the spot on the array photodetector. A microprocessor and memory is connected to the analog-to-digital converter to hold and manipulate data provided by the analog-to-digital converter on the position of the spot and to compute the linear displacement of the moving object based upon the data from the analog-to-digital converter.

  3. Multi-frequency polarimetry of the Galactic radio background around 350 MHz. I. A region in Auriga around l = 161 deg, b = 16 deg

    NASA Astrophysics Data System (ADS)

    Haverkorn, M.; Katgert, P.; de Bruyn, A. G.

    2003-06-01

    With the Westerbork Synthesis Radio Telescope (WSRT), multi-frequency polarimetric images were taken of the diffuse radio synchrotron background in a ~ 5 deg times 7 deg region centered on (l,b) = (161 deg ,16 deg ) in the constellation of Auriga. The observations were done simultaneously in 5 frequency bands, from 341 MHz to 375 MHz, and have a resolution of ~ 5.0arcminx5 .0arcmin cosec delta . The polarized intensity P and polarization angle phi show ubiquitous structure on arcminute and degree scales, with polarized brightness temperatures up to about 13 K. On the other hand, no structure at all is observed in total intensity I to an rms limit of 1.3 K, indicating that the structure in the polarized radiation must be due to Faraday rotation and depolarization mostly in the warm component of the nearby Galactic interstellar medium (ISM). Different depolarization processes create structure in polarized intensity P. Beam depolarization creates ``depolarization canals'' of one beam wide, while depth depolarization is thought to be responsible for creating most of the structure on scales larger than a beam width. Rotation measures (RM) can be reliably determined, and are in the range -17 <~ RM <~ 10 rad m-2 with a non-zero average RM0 ~ -3.4 rad m-2. The distribution of RMs on the sky shows both abrupt changes on the scales of the beam and a gradient in the direction of positive Galactic longitude of ~ 1 rad m-2 per degree. The gradient and average RM are consistent with a regular magnetic field of ~ 1 mu G which has a pitch angle of p = -14 deg. There are 13 extragalactic sources in the field for which RMs could be derived, and those have |RM| <~ 13 rad m-2, with an estimated intrinsic source contribution of ~ 3.6 rad m-2. The RMs of the extragalactic sources show a gradient that is about 3 times larger than the gradient in the RMs of the diffuse emission and that is approximately in Galactic latitude. This difference is ascribed to a vastly different effective

  4. Field test of a multi-frequency electromagnetic induction sensor for the study of soil moisture in different land-soil units

    NASA Astrophysics Data System (ADS)

    Calamita, Giuseppe; Onorati, Beniamino; Perrone, Angela; Manfreda, Salvatore; Brocca, Luca

    2015-04-01

    appealing compared to satellite remote sensing (RS) methods. However, similarly to RS, the interpretation of the EMI measurements is not straightforward due to the simultaneous influence of different soil properties. So far, the great majority of the studies have used mono-frequency EMI sensors for periods of time shorter than one year. Moreover studies over area with medium to high vegetation density are still quite rare. The focus of this work is to evaluate the usability of the GEM-300 multi-frequency EMI sensor for spatial and temporal SM retrieval at the hillslope scale over a number of diverse land-soil units including some of the less explored types, like highland forested areas. Further, some aspects relating to the inherent stability of the GEM-300 sensor, which were never addressed before in this research area, are also explored. The test sites are located in the "Fiumarella di Corleto" experimental basin, located in Basilicata region (southern Italy). The experimentation lasted from May 2012 to May 2013. Regular grids (80 x 80 mq) and a transect (60 m) were used as spatial sampling schemes. A TDR mobile probe was used for SM measurements on the 25 points of each grid whereas fixed buried TDR probes were used on the 11 points of transect. The obtained results allowed us to investigate the spatial and temporal variability and relation between TDR and EMI sensors.

  5. Space vehicle onboard command encoder

    NASA Technical Reports Server (NTRS)

    1975-01-01

    A flexible onboard encoder system was designed for the space shuttle. The following areas were covered: (1) implementation of the encoder design into hardware to demonstrate the various encoding algorithms/code formats, (2) modulation techniques in a single hardware package to maintain comparable reliability and link integrity of the existing link systems and to integrate the various techniques into a single design using current technology. The primary function of the command encoder is to accept input commands, generated either locally onboard the space shuttle or remotely from the ground, format and encode the commands in accordance with the payload input requirements and appropriately modulate a subcarrier for transmission by the baseband RF modulator. The following information was provided: command encoder system design, brassboard hardware design, test set hardware and system packaging, and software.

  6. N-Consecutive-Phase Encoder

    NASA Technical Reports Server (NTRS)

    Divsalar, Dariush; Lee, Ho-Kyoung; Weber, Charles

    1995-01-01

    N-consecutive-phase encoder (NCPE) is conceptual encoder for generating alphabet of N consecutive full-response continuous-phase-modulation (CPM) signals. Enables use of binary preencoder of higher rate than used with simple continuous-phase encoder (CPE). NCPE makes possible to achieve power efficiencies and bandwidth efficiencies greater than conventional trellis coders with continuous-phase frequency-shift keying (CPFSK).

  7. Field demonstration of simultaneous wind and temperature measurements from 5 to 50 km with a Na double-edge magneto-optic filter in a multi-frequency Doppler lidar.

    PubMed

    Huang, Wentao; Chu, Xinzhao; Wiig, Johannes; Tan, Bo; Yamashita, Chihoko; Yuan, T; Yue, J; Harrell, S D; She, C-Y; Williams, B P; Friedman, J S; Hardesty, R M

    2009-05-15

    We report the first (to our knowledge) field demonstration of simultaneous wind and temperature measurements with a Na double-edge magneto-optic filter implemented in the receiver of a three-frequency Na Doppler lidar. Reliable winds and temperatures were obtained in the altitude range of 10-45 km with 1 km resolution and 60 min integration under the conditions of 0.4 W lidar power and 75 cm telescope aperture. This edge filter with a multi-frequency lidar concept can be applied to other direct-detection Doppler lidars for profiling both wind and temperature simultaneously from the lower to the upper atmosphere.

  8. Prosodic Encoding in Silent Reading.

    ERIC Educational Resources Information Center

    Wilkenfeld, Deborah

    In silent reading, short-memory tasks, such as semantic and syntactic processing, require a stage of phonetic encoding between visual representation and the actual extraction of meaning, and this encoding includes prosodic as well as segmental features. To test for this suprasegmental coding, an experiment was conducted in which subjects were…

  9. Information encoder/decoder using chaotic systems

    DOEpatents

    Miller, S.L.; Miller, W.M.; McWhorter, P.J.

    1997-10-21

    The present invention discloses a chaotic system-based information encoder and decoder that operates according to a relationship defining a chaotic system. Encoder input signals modify the dynamics of the chaotic system comprising the encoder. The modifications result in chaotic, encoder output signals that contain the encoder input signals encoded within them. The encoder output signals are then capable of secure transmissions using conventional transmission techniques. A decoder receives the encoder output signals (i.e., decoder input signals) and inverts the dynamics of the encoding system to directly reconstruct the original encoder input signals. 32 figs.

  10. Information encoder/decoder using chaotic systems

    DOEpatents

    Miller, Samuel Lee; Miller, William Michael; McWhorter, Paul Jackson

    1997-01-01

    The present invention discloses a chaotic system-based information encoder and decoder that operates according to a relationship defining a chaotic system. Encoder input signals modify the dynamics of the chaotic system comprising the encoder. The modifications result in chaotic, encoder output signals that contain the encoder input signals encoded within them. The encoder output signals are then capable of secure transmissions using conventional transmission techniques. A decoder receives the encoder output signals (i.e., decoder input signals) and inverts the dynamics of the encoding system to directly reconstruct the original encoder input signals.

  11. PNA-encoded chemical libraries.

    PubMed

    Zambaldo, Claudio; Barluenga, Sofia; Winssinger, Nicolas

    2015-06-01

    Peptide nucleic acid (PNA)-encoded chemical libraries along with DNA-encoded libraries have provided a powerful new paradigm for library synthesis and ligand discovery. PNA-encoding stands out for its compatibility with standard solid phase synthesis and the technology has been used to prepare libraries of peptides, heterocycles and glycoconjugates. Different screening formats have now been reported including selection-based and microarray-based methods that have yielded specific ligands against diverse target classes including membrane receptors, lectins and challenging targets such as Hsp70.

  12. DNA sequences encoding osteoinductive products

    SciTech Connect

    Wang, E.A.; Wozney, J.M.; Rosen, V.

    1991-05-07

    This patent describes an isolated DNA sequence encoding an osteoinductive protein the DNA sequence comprising a coding sequence. It comprises: nucleotide No.1 through nucleotide No.387, nucleotide No.356 through nucleotide No.1543, nucleotide $402 through nucleotide No.1626, naturally occurring allelic sequences and equivalent degenerative codon sequences and sequences which hybridize to any of sequences under stringent hybridization conditions; and encode a protein characterized by the ability to induce the formation of bone and/or cartilage.

  13. Multidimensionally encoded magnetic resonance imaging.

    PubMed

    Lin, Fa-Hsuan

    2013-07-01

    Magnetic resonance imaging (MRI) typically achieves spatial encoding by measuring the projection of a q-dimensional object over q-dimensional spatial bases created by linear spatial encoding magnetic fields (SEMs). Recently, imaging strategies using nonlinear SEMs have demonstrated potential advantages for reconstructing images with higher spatiotemporal resolution and reducing peripheral nerve stimulation. In practice, nonlinear SEMs and linear SEMs can be used jointly to further improve the image reconstruction performance. Here, we propose the multidimensionally encoded (MDE) MRI to map a q-dimensional object onto a p-dimensional encoding space where p > q. MDE MRI is a theoretical framework linking imaging strategies using linear and nonlinear SEMs. Using a system of eight surface SEM coils with an eight-channel radiofrequency coil array, we demonstrate the five-dimensional MDE MRI for a two-dimensional object as a further generalization of PatLoc imaging and O-space imaging. We also present a method of optimizing spatial bases in MDE MRI. Results show that MDE MRI with a higher dimensional encoding space can reconstruct images more efficiently and with a smaller reconstruction error when the k-space sampling distribution and the number of samples are controlled.

  14. Fly Photoreceptors Encode Phase Congruency

    PubMed Central

    Friederich, Uwe; Billings, Stephen A.; Hardie, Roger C.; Juusola, Mikko; Coca, Daniel

    2016-01-01

    More than five decades ago it was postulated that sensory neurons detect and selectively enhance behaviourally relevant features of natural signals. Although we now know that sensory neurons are tuned to efficiently encode natural stimuli, until now it was not clear what statistical features of the stimuli they encode and how. Here we reverse-engineer the neural code of Drosophila photoreceptors and show for the first time that photoreceptors exploit nonlinear dynamics to selectively enhance and encode phase-related features of temporal stimuli, such as local phase congruency, which are invariant to changes in illumination and contrast. We demonstrate that to mitigate for the inherent sensitivity to noise of the local phase congruency measure, the nonlinear coding mechanisms of the fly photoreceptors are tuned to suppress random phase signals, which explains why photoreceptor responses to naturalistic stimuli are significantly different from their responses to white noise stimuli. PMID:27336733

  15. Synaptic encoding of temporal contiguity

    PubMed Central

    Ostojic, Srdjan; Fusi, Stefano

    2013-01-01

    Often we need to perform tasks in an environment that changes stochastically. In these situations it is important to learn the statistics of sequences of events in order to predict the future and the outcome of our actions. The statistical description of many of these sequences can be reduced to the set of probabilities that a particular event follows another event (temporal contiguity). Under these conditions, it is important to encode and store in our memory these transition probabilities. Here we show that for a large class of synaptic plasticity models, the distribution of synaptic strengths encodes transitions probabilities. Specifically, when the synaptic dynamics depend on pairs of contiguous events and the synapses can remember multiple instances of the transitions, then the average synaptic weights are a monotonic function of the transition probabilities. The synaptic weights converge to the distribution encoding the probabilities also when the correlations between consecutive synaptic modifications are considered. We studied how this distribution depends on the number of synaptic states for a specific model of a multi-state synapse with hard bounds. In the case of bistable synapses, the average synaptic weights are a smooth function of the transition probabilities and the accuracy of the encoding depends on the learning rate. As the number of synaptic states increases, the average synaptic weights become a step function of the transition probabilities. We finally show that the information stored in the synaptic weights can be read out by a simple rate-based neural network. Our study shows that synapses encode transition probabilities under general assumptions and this indicates that temporal contiguity is likely to be encoded and harnessed in almost every neural circuit in the brain. PMID:23641210

  16. How Infants Encode Spatial Extent

    ERIC Educational Resources Information Center

    Duffy, Sean; Huttenlocher, Janellen; Levine, Susan; Duffy, Renee

    2005-01-01

    This study explores how infants encode an object's spatial extent. We habituated 6.5-month-old infants to a dowel inside a container and then tested whether they dishabituate to a change in absolute size when the relation between dowel and container is held constant (by altering the size of both container and dowel) and when the relation changes…

  17. Encoding Knowledge of Commonsense Psychology

    DTIC Science & Technology

    2005-01-01

    Encoding Knowledge of Commonsense Psychology Jerry R. Hobbs Andrew S. Gordon Information Sciences Institute Institute for Creative Technologies...time. Thirty of the representational areas, involving 635 concepts, were concerned with commonsense psychology ; among these are memory, knowledge...management, planning, and so on. This result by itself demonstrates the very great importance of commonsense psychology in the construction of intelligent

  18. Spectrally-encoded color imaging

    PubMed Central

    Kang, DongKyun; Yelin, Dvir; Bouma, Brett E.; Tearney, Guillermo J.

    2010-01-01

    Spectrally-encoded endoscopy (SEE) is a technique for ultraminiature endoscopy that encodes each spatial location on the sample with a different wavelength. One limitation of previous incarnations of SEE is that it inherently creates monochromatic images, since the spectral bandwidth is expended in the spatial encoding process. Here we present a spectrally-encoded imaging system that has color imaging capability. The new imaging system utilizes three distinct red, green, and blue spectral bands that are configured to illuminate the grating at different incident angles. By careful selection of the incident angles, the three spectral bands can be made to overlap on the sample. To demonstrate the method, a bench-top system was built, comprising a 2400-lpmm grating illuminated by three 525-μm-diameter beams with three different spectral bands. Each spectral band had a bandwidth of 75 nm, producing 189 resolvable points. A resolution target, color phantoms, and excised swine small intestine were imaged to validate the system's performance. The color SEE system showed qualitatively and quantitatively similar color imaging performance to that of a conventional digital camera. PMID:19688002

  19. Encoding Ownership Types in Java

    NASA Astrophysics Data System (ADS)

    Cameron, Nicholas; Noble, James

    Ownership types systems organise the heap into a hierarchy which can be used to support encapsulation properties, effects, and invariants. Ownership types have many applications including parallelisation, concurrency, memory management, and security. In this paper, we show that several flavours and extensions of ownership types can be entirely encoded using the standard Java type system.

  20. Encoding information into precipitation structures

    NASA Astrophysics Data System (ADS)

    Martens, Kirsten; Bena, Ioana; Droz, Michel; Rácz, Zoltan

    2008-12-01

    Material design at submicron scales would be profoundly affected if the formation of precipitation patterns could be easily controlled. It would allow the direct building of bulk structures, in contrast to traditional techniques which consist of removing material in order to create patterns. Here, we discuss an extension of our recent proposal of using electrical currents to control precipitation bands which emerge in the wake of reaction fronts in A+ + B- → C reaction-diffusion processes. Our main result, based on simulating the reaction-diffusion-precipitation equations, is that the dynamics of the charged agents can be guided by an appropriately designed time-dependent electric current so that, in addition to the control of the band spacing, the width of the precipitation bands can also be tuned. This makes straightforward the encoding of information into precipitation patterns and, as an amusing example, we demonstrate the feasibility by showing how to encode a musical rhythm.

  1. Hall effect encoding of brushless dc motors

    NASA Technical Reports Server (NTRS)

    Berard, C. A.; Furia, T. J.; Goldberg, E. A.; Greene, R. C.

    1970-01-01

    Encoding mechanism integral to the motor and using the permanent magnets embedded in the rotor eliminates the need for external devices to encode information relating the position and velocity of the rotating member.

  2. Multi-Frequency View Of Jetted AGN

    NASA Astrophysics Data System (ADS)

    Giroletti, Marcello; Orienti, M.; D'Ammando, F.; Lico, R.; Giovannini, G.:

    2016-10-01

    I will present a review on the context and the most recent results about radio loud AGNs as seen in different parts of the electromagnetic spectrum, with an eye also to multi-messenger astrophysics and neutrinos in particular. I will focus on various topics of interest about RL AGNs, such as: the study of the physics of relativistic jets and particle acceleration, in particular through VLBI and gamma ray observations; the feedback to the host galaxy and on galaxy cluster scales; the possibility to probe distant and obscured environments.

  3. Schematic driven layout of Reed Solomon encoders

    NASA Technical Reports Server (NTRS)

    Arave, Kari; Canaris, John; Miles, Lowell; Whitaker, Sterling

    1992-01-01

    Two Reed Solomon error correcting encoders are presented. Schematic driven layout tools were used to create the encoder layouts. Special consideration had to be given to the architecture and logic to provide scalability of the encoder designs. Knowledge gained from these projects was used to create a more flexible schematic driven layout system.

  4. Molecular mechanisms for protein-encoded inheritance

    SciTech Connect

    Wiltzius, Jed J.W.; Landau, Meytal; Nelson, Rebecca; Sawaya, Michael R.; Apostol, Marcin I.; Goldschmidt, Lukasz; Soriaga, Angela B.; Cascio, Duilio; Rajashankar, Kanagalaghatta; Eisenberg, David

    2009-12-01

    In prion inheritance and transmission, strains are phenotypic variants encoded by protein 'conformations'. However, it is unclear how a protein conformation can be stable enough to endure transmission between cells or organisms. Here we describe new polymorphic crystal structures of segments of prion and other amyloid proteins, which offer two structural mechanisms for the encoding of prion strains. In packing polymorphism, prion strains are encoded by alternative packing arrangements (polymorphs) of {beta}-sheets formed by the same segment of a protein; in segmental polymorphism, prion strains are encoded by distinct {beta}-sheets built from different segments of a protein. Both forms of polymorphism can produce enduring conformations capable of encoding strains. These molecular mechanisms for transfer of protein-encoded information into prion strains share features with the familiar mechanism for transfer of nucleic acid-encoded information into microbial strains, including sequence specificity and recognition by noncovalent bonds.

  5. Euphausiid distribution along the Western Antarctic Peninsula—Part A: Development of robust multi-frequency acoustic techniques to identify euphausiid aggregations and quantify euphausiid size, abundance, and biomass

    NASA Astrophysics Data System (ADS)

    Lawson, Gareth L.; Wiebe, Peter H.; Stanton, Timothy K.; Ashjian, Carin J.

    2008-02-01

    Methods were refined and tested for identifying the aggregations of Antarctic euphausiids ( Euphausia spp.) and then estimating euphausiid size, abundance, and biomass, based on multi-frequency acoustic survey data. A threshold level of volume backscattering strength for distinguishing euphausiid aggregations from other zooplankton was derived on the basis of published measurements of euphausiid visual acuity and estimates of the minimum density of animals over which an individual can maintain visual contact with its nearest neighbor. Differences in mean volume backscattering strength at 120 and 43 kHz further served to distinguish euphausiids from other sources of scattering. An inversion method was then developed to estimate simultaneously the mean length and density of euphausiids in these acoustically identified aggregations based on measurements of mean volume backscattering strength at four frequencies (43, 120, 200, and 420 kHz). The methods were tested at certain locations within an acoustically surveyed continental shelf region in and around Marguerite Bay, west of the Antarctic Peninsula, where independent evidence was also available from net and video systems. Inversion results at these test sites were similar to net samples for estimated length, but acoustic estimates of euphausiid density exceeded those from nets by one to two orders of magnitude, likely due primarily to avoidance and to a lesser extent to differences in the volumes sampled by the two systems. In a companion study, these methods were applied to the full acoustic survey data in order to examine the distribution of euphausiids in relation to aspects of the physical and biological environment [Lawson, G.L., Wiebe, P.H., Ashjian, C.J., Stanton, T.K., 2008. Euphausiid distribution along the Western Antarctic Peninsula—Part B: Distribution of euphausiid aggregations and biomass, and associations with environmental features. Deep-Sea Research II, this issue [doi:10.1016/j.dsr2.2007.11.014

  6. The potential of at-home prediction of the formation of urolithiasis by simple multi-frequency electrical conductivity of the urine and the comparison of its performance with urine ion-related indices, color and specific gravity.

    PubMed

    Silverio, Angelito A; Chung, Wen-Yaw; Cheng, Cheanyeh; Wang, Hai-Lung; Kung, Chien-Min; Chen, Jun; Tsai, Vincent F S

    2016-04-01

    It is important to control daily diet, water intake and life style as well as monitor the quality of urine for urolithiasis prevention. For decades, many ion-related indices have been developed for predicting the formation of urinary stones or urolithiasis, such as EQUILs, relative supersaturation (RSS), Tiselius indices (TI), Robertson risk factor algorithms (RRFA) and more recently, the Bonn risk index. However, they mostly demand robust laboratory analysis, are work-intensive, and even require complex computational programs to get the concentration patterns of several urine analytes. A simple and fast platform for measuring multi-frequency electrical conductivity (MFEC) of morning spot urine (random urine) to predict the onset of urolithiasis was implemented in this study. The performance thereof was compared to ion-related indices, urine color and specific gravity. The concentrations of relevant ions, color, specific gravity (SG) and MFEC (MFEC tested at 1, 10, 100, 5001 KHz and 1 MHz) of 80 random urine samples were examined after collection. Then, the urine samples were stored at 4 °C for 24 h to determine whether sedimentation would occur or not. Ion-activity product index of calcium oxalate (AP(CaOx) EQ2) was calculated. The correlation between AP(CaOx) EQ2, urine color, SG and MFEC were analyzed. AP(CaOx) EQ2, urine color and MFEC (at 5 frequencies) all demonstrated good prediction (p = 0.01, 0.01, 0.01, respectively) for stone formation. The positive correlation between AP(CaOx) EQ2 and MFEC is also significant (p = 0.01). MFEC provides a good metric for predicting the onset of urolithiasis, which is comparable to conventional ion-related indices and urine color. This technology can be implemented with much ease for objectively monitoring the quality of urine at points-of-care or at home.

  7. SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.

    PubMed

    Hitz, Benjamin C; Rowe, Laurence D; Podduturi, Nikhil R; Glick, David I; Baymuradov, Ulugbek K; Malladi, Venkat S; Chan, Esther T; Davidson, Jean M; Gabdank, Idan; Narayana, Aditi K; Onate, Kathrina C; Hilton, Jason; Ho, Marcus C; Lee, Brian T; Miyasato, Stuart R; Dreszer, Timothy R; Sloan, Cricket A; Strattan, J Seth; Tanaka, Forrest Y; Hong, Eurie L; Cherry, J Michael

    2017-01-01

    The Encyclopedia of DNA elements (ENCODE) project is an ongoing collaborative effort to create a comprehensive catalog of functional elements initiated shortly after the completion of the Human Genome Project. The current database exceeds 6500 experiments across more than 450 cell lines and tissues using a wide array of experimental techniques to study the chromatin structure, regulatory and transcriptional landscape of the H. sapiens and M. musculus genomes. All ENCODE experimental data, metadata, and associated computational analyses are submitted to the ENCODE Data Coordination Center (DCC) for validation, tracking, storage, unified processing, and distribution to community resources and the scientific community. As the volume of data increases, the identification and organization of experimental details becomes increasingly intricate and demands careful curation. The ENCODE DCC has created a general purpose software system, known as SnoVault, that supports metadata and file submission, a database used for metadata storage, web pages for displaying the metadata and a robust API for querying the metadata. The software is fully open-source, code and installation instructions can be found at: http://github.com/ENCODE-DCC/snovault/ (for the generic database) and http://github.com/ENCODE-DCC/encoded/ to store genomic data in the manner of ENCODE. The core database engine, SnoVault (which is completely independent of ENCODE, genomic data, or bioinformatic data) has been released as a separate Python package.

  8. Genetic Associations with Plasma B12, B6, and Folate Levels in an Ischemic Stroke Population from the Vitamin Intervention for Stroke Prevention (VISP) Trial

    PubMed Central

    Keene, Keith L.; Chen, Wei-Min; Chen, Fang; Williams, Stephen R.; Elkhatib, Stacey D.; Hsu, Fang-Chi; Mychaleckyj, Josyf C.; Doheny, Kimberly F.; Pugh, Elizabeth W.; Ling, Hua; Laurie, Cathy C.; Gogarten, Stephanie M.; Madden, Ebony B.; Worrall, Bradford B.; Sale, Michele M.

    2014-01-01

    Background: B vitamins play an important role in homocysteine metabolism, with vitamin deficiencies resulting in increased levels of homocysteine and increased risk for stroke. We performed a genome-wide association study (GWAS) in 2,100 stroke patients from the Vitamin Intervention for Stroke Prevention (VISP) trial, a clinical trial designed to determine whether the daily intake of high-dose folic acid, vitamins B6, and B12 reduce recurrent cerebral infarction. Methods: Extensive quality control (QC) measures resulted in a total of 737,081 SNPs for analysis. Genome-wide association analyses for baseline quantitative measures of folate, Vitamins B12, and B6 were completed using linear regression approaches, implemented in PLINK. Results: Six associations met or exceeded genome-wide significance (P ≤ 5 × 10−08). For baseline Vitamin B12, the strongest association was observed with a non-synonymous SNP (nsSNP) located in the CUBN gene (P = 1.76 × 10−13). Two additional CUBN intronic SNPs demonstrated strong associations with B12 (P = 2.92 × 10−10 and 4.11 × 10−10), while a second nsSNP, located in the TCN1 gene, also reached genome-wide significance (P = 5.14 × 10−11). For baseline measures of Vitamin B6, we identified genome-wide significant associations for SNPs at the ALPL locus (rs1697421; P = 7.06 × 10−10 and rs1780316; P = 2.25 × 10−08). In addition to the six genome-wide significant associations, nine SNPs (two for Vitamin B6, six for Vitamin B12, and one for folate measures) provided suggestive evidence for association (P ≤ 10−07). Conclusion: Our GWAS study has identified six genome-wide significant associations, nine suggestive associations, and successfully replicated 5 of 16 SNPs previously reported to be associated with measures of B vitamins. The six genome-wide significant associations are located in gene regions that have shown previous associations with measures of B vitamins; however, four of the nine suggestive associations represent novel finding and warrant further investigation in additional populations. PMID:25147783

  9. Image encoding with triangulation wavelets

    NASA Astrophysics Data System (ADS)

    Hebert, D. J.; Kim, HyungJun

    1995-09-01

    We demonstrate some wavelet-based image processing applications of a class of simplicial grids arising in finite element computations and computer graphics. The cells of a triangular grid form the set of leaves of a binary tree and the nodes of a directed graph consisting of a single cycle. The leaf cycle of a uniform grid forms a pattern for pixel image scanning and for coherent computation of coefficients of splines and wavelets. A simple form of image encoding is accomplished with a 1D quadrature mirror filter whose coefficients represent an expansion of the image in terms of 2D Haar wavelets with triangular support. A combination the leaf cycle and an inherent quadtree structure allow efficient neighbor finding, grid refinement, tree pruning and storage. Pruning of the simplex tree yields a partially compressed image which requires no decoding, but rather may be rendered as a shaded triangulation. This structure and its generalization to n-dimensions form a convenient setting for wavelet analysis and computations based on simplicial grids.

  10. Evaluation of GOES encoder lamps

    NASA Technical Reports Server (NTRS)

    Viehmann, W.; Helmold, N.

    1983-01-01

    Aging characteristics and life expectancies of flight quality, tungsten filament, encoder lamps are similar to those of 'commercial' grade gas filled lamps of similar construction, filament material and filament temperature. The aging and final failure by filament burnout are caused by single crystal growth over large portions of the filament with the concomitant development of facets and notches resulting in reduction of cross section and mechanical weakening of the filament. The life expectancy of presently produced lamps is about one year at their nominal operating voltage of five volts dc. At 4.5 volts, it is about two years. These life times are considerably shorter, and the degradation rates of lamp current and light flux are considerably higher, than were observed in the laboratory and in orbit on lamps of the same type manufactured more than a decade ago. It is speculated that the filaments of these earlier lamps contained a crystallization retarding dopant, possibly thorium oxide. To obtain the desired life expectancy of or = to four years in present lamps, operating voltages of or = to four volts dc would be required.

  11. Encoders for block-circulant LDPC codes

    NASA Technical Reports Server (NTRS)

    Andrews, Kenneth; Dolinar, Sam; Thorpe, Jeremy

    2005-01-01

    In this paper, we present two encoding methods for block-circulant LDPC codes. The first is an iterative encoding method based on the erasure decoding algorithm, and the computations required are well organized due to the block-circulant structure of the parity check matrix. The second method uses block-circulant generator matrices, and the encoders are very similar to those for recursive convolutional codes. Some encoders of the second type have been implemented in a small Field Programmable Gate Array (FPGA) and operate at 100 Msymbols/second.

  12. Unconscious relational encoding depends on hippocampus

    PubMed Central

    Duss, Simone B.; Reber, Thomas P.; Hänggi, Jürgen; Schwab, Simon; Wiest, Roland; Müri, René M.; Brugger, Peter; Gutbrod, Klemens

    2014-01-01

    Textbooks divide between human memory systems based on consciousness. Hippocampus is thought to support only conscious encoding, while neocortex supports both conscious and unconscious encoding. We tested whether processing modes, not consciousness, divide between memory systems in three neuroimaging experiments with 11 amnesic patients (mean age = 45.55 years, standard deviation = 8.74, range = 23–60) and 11 matched healthy control subjects. Examined processing modes were single item versus relational encoding with only relational encoding hypothesized to depend on hippocampus. Participants encoded and later retrieved either single words or new relations between words. Consciousness of encoding was excluded by subliminal (invisible) word presentation. Amnesic patients and controls performed equally well on the single item task activating prefrontal cortex. But only the controls succeeded on the relational task activating the hippocampus, while amnesic patients failed as a group. Hence, unconscious relational encoding, but not unconscious single item encoding, depended on hippocampus. Yet, three patients performed normally on unconscious relational encoding in spite of amnesia capitalizing on spared hippocampal tissue and connections to language cortex. This pattern of results suggests that processing modes divide between memory systems, while consciousness divides between levels of function within a memory system. PMID:25273998

  13. Is the Wilkins Ice Shelf a Firn Aquifer? Spaceborne Observation of Subsurface Winter Season Liquid Meltwater Storage on the Antarctic Peninsula using Multi-Frequency Active and Passive Microwave Remote Sensing

    NASA Astrophysics Data System (ADS)

    Miller, J.; Scambos, T.; Forster, R. R.; Long, D. G.; Ligtenberg, S.; van den Broeke, M.; Vaughan, D. G.

    2015-12-01

    Near-surface liquid meltwater on ice shelves has been inferred to influence ice shelf stability if it induces hydrofracture and is linked to disintegration events on the Larsen B and the Wilkins ice shelves on the Antarctic Peninsula during the summer months. While the initial Wilkins disintegration event occurred in March of 2009, two smaller disintegration events followed in May and in July of that year. It has long been assumed meltwater refreezes soon after surface melt processes cease. Given this assumption, an earlier hypothesis for the two winter season disintegration events was hydrofracture via a brine infiltration layer. Two lines of evidence supported this hypothesis 1) early airborne radar surveys did not record a reflection from the bottom of the ice shelf, and 2) a shallow core drilled in 1972 on the Wilkins encountered liquid water at a depth of ~7 m. The salinity of the water and the temperature at the base of the core, however, were not described. The recent discovery of winter season liquid meltwater storage on the Greenland ice sheet has changed perceptions on meltwater longevity at depth in firn. Evidence of Greenland's firn aquifer includes liquid meltwater encountered in shallow firn cores at 5 m depth and a lack of reflections from the base of the ice sheet in airborne surveys. Thus, previous lines of evidence suggesting brine infiltration may alternatively suggest the presence of a perennial firn aquifer. We recently demonstrated the capability for observation of Greenland's firn aquifer from space using multi-frequency active and passive microwave remote sensing. This research exploits the retrieval technique developed for Greenland to provide the first spaceborne mappings of winter season liquid meltwater storage on the Wilkins. We combine L-band brightness temperature and backscatter data from the MIRAS instrument (1.4 GHz) aboard ESA's Soil Moisture and Ocean Salinity mission and the radar (1.3 GHZ) and radiometer(1.4 GHz) aboard NASA

  14. Optoelectronic Shaft-Angle Encoder Tolerates Misalignments

    NASA Technical Reports Server (NTRS)

    Osborne, Eric P.

    1991-01-01

    Optoelectronic shaft-angle encoder measures angle of rotation of shaft with high precision while minimizing effects of eccentricity and other misalignments. Grooves on disk serve as reference marks to locate reading heads and measure increments of rotation of disk. Shaft-angle encoder, resembling optical compact-disk drive, includes two tracking heads illuminating grooves on disk and measures reflections from them.

  15. DNA encoding a DNA repair protein

    DOEpatents

    Petrini, John H.; Morgan, William Francis; Maser, Richard Scott; Carney, James Patrick

    2006-08-15

    An isolated and purified DNA molecule encoding a DNA repair protein, p95, is provided, as is isolated and purified p95. Also provided are methods of detecting p95 and DNA encoding p95. The invention further provides p95 knock-out mice.

  16. Experiments in encoding multilevel images as quadtrees

    NASA Technical Reports Server (NTRS)

    Lansing, Donald L.

    1987-01-01

    Image storage requirements for several encoding methods are investigated and the use of quadtrees with multigray level or multicolor images are explored. The results of encoding a variety of images having up to 256 gray levels using three schemes (full raster, runlength and quadtree) are presented. Although there is considerable literature on the use of quadtrees to store and manipulate binary images, their application to multilevel images is relatively undeveloped. The potential advantage of quadtree encoding is that an entire area with a uniform gray level may be encoded as a unit. A pointerless quadtree encoding scheme is described. Data are presented on the size of the quadtree required to encode selected images and on the relative storage requirements of the three encoding schemes. A segmentation scheme based on the statistical variation of gray levels within a quadtree quadrant is described. This parametric scheme may be used to control the storage required by an encoded image and to preprocess a scene for feature identification. Several sets of black and white and pseudocolor images obtained by varying the segmentation parameter are shown.

  17. The Acquisition of Syntactically Encoded Evidentiality

    ERIC Educational Resources Information Center

    Rett, Jessica; Hyams, Nina

    2014-01-01

    This article presents several empirical studies of syntactically encoded evidentiality in English. The first part of our study consists of an adult online experiment that confirms claims in Asudeh & Toivonen (2012) that raised Perception Verb Similatives (PVSs; e.g. "John looks like he is sick") encode direct evidentiality. We then…

  18. Recent advances on the encoding and selection methods of DNA-encoded chemical library.

    PubMed

    Shi, Bingbing; Zhou, Yu; Huang, Yiran; Zhang, Jianfu; Li, Xiaoyu

    2017-02-01

    DNA-encoded chemical library (DEL) has emerged as a powerful and versatile tool for ligand discovery in chemical biology research and in drug discovery. Encoding and selection methods are two of the most important technological aspects of DEL that can dictate the performance and utilities of DELs. In this digest, we have summarized recent advances on the encoding and selection strategies of DEL and also discussed the latest developments on DNA-encoded dynamic library, a new frontier in DEL research.

  19. Comparison of H.265/HEVC encoders

    NASA Astrophysics Data System (ADS)

    Trochimiuk, Maciej

    2016-09-01

    The H.265/HEVC is the state-of-the-art video compression standard, which allows the bitrate reduction up to 50% compared with its predecessor, H.264/AVC, maintaining equal perceptual video quality. The growth in coding efficiency was achieved by increasing the number of available intra- and inter-frame prediction features and improvements in existing ones, such as entropy encoding and filtering. Nevertheless, to achieve real-time performance of the encoder, simplifications in algorithm are inevitable. Some features and coding modes shall be skipped, to reduce time needed to evaluate modes forwarded to rate-distortion optimisation. Thus, the potential acceleration of the encoding process comes at the expense of coding efficiency. In this paper, a trade-off between video quality and encoding speed of various H.265/HEVC encoders is discussed.

  20. Industrial Applications Of Optical Shaft Encoders

    NASA Astrophysics Data System (ADS)

    Edmister, Brian W.

    1980-11-01

    The development of the microprocessor and mini-computer for industrial process control has made the optical shaft angle encoder a natural choice for a position feedback transducer. Many of these applications, however, require the encoder to operate reliably in extremely hostile environments. In response to this, the encoder manufacturer has been faced with reliability problems which fall into the following general categories: 1. Exposure to weather 2. Wide operating and storage temperature range 3. Exposure to corrosive chemicals 4. Severe shock and vibration 5. High electrical noise levels 6. Severe blows to encoder housing 7. Operation in explosive atmospheres Three of these applications expose the encoder to most of these environmental conditions: 1. A jack-up control position feedback for an offshore oil well drilling rig 2. A depth measurement system for oil well logging instrumentation 3. Elevation and azimuth feedback for a solar power plant heliostat

  1. Encoder: A Connectionist Model of How Learning to Visually Encode Fixated Text Images Improves Reading Fluency

    ERIC Educational Resources Information Center

    Martin, Gale L.

    2004-01-01

    This article proposes that visual encoding learning improves reading fluency by widening the span over which letters are recognized from a fixated text image so that fewer fixations are needed to cover a text line. Encoder is a connectionist model that learns to convert images like the fixated text images human readers encode into the…

  2. Efficient reverse time migration with amplitude encoding

    NASA Astrophysics Data System (ADS)

    Hu, Jiangtao; Wang, Huazhong; Zhao, Lei; Shao, Yu; Wang, Meixia; Osen, Are

    2015-08-01

    Reverse time migration (RTM) is an accurate seismic imaging method for imaging the complex subsurface structure. Traditional common shot RTM suffers from low efficiency due to the large number of single shot gathers, especially for marine seismic data. Phase encoding is commonly used to reduce the computational cost of RTM. Phase encoding in the frequency domain is usually related to time shift in the time domain. Therefore, phase-encoding-based RTM needs time padding to avoid information loss which degrades the efficiency of the time-domain wavefield extrapolator. In this paper, an efficient time-domain RTM scheme based on the amplitude encoding is proposed. This scheme uses the orthogonal cosine basis as the encoding function, which has similar physical meaning to plane wave encoding (i.e. plane-wave components with different surface shooting angles). The proposed scheme can generate a qualified imaging result as well as common shot RTM but with less computational cost. Since this scheme does not need time padding, it is more efficient than the phase encoding schemes and can be conveniently implemented in the time domain. Numerical examples on the Sigsbee2a synthetic dataset demonstrate the feasibility of the proposed method.

  3. Encoding entanglement-assisted quantum stabilizer codes

    NASA Astrophysics Data System (ADS)

    Wang, Yun-Jiang; Bai, Bao-Ming; Li, Zhuo; Peng, Jin-Ye; Xiao, He-Ling

    2012-02-01

    We address the problem of encoding entanglement-assisted (EA) quantum error-correcting codes (QECCs) and of the corresponding complexity. We present an iterative algorithm from which a quantum circuit composed of CNOT, H, and S gates can be derived directly with complexity O(n2) to encode the qubits being sent. Moreover, we derive the number of each gate consumed in our algorithm according to which we can design EA QECCs with low encoding complexity. Another advantage brought by our algorithm is the easiness and efficiency of programming on classical computers.

  4. Pulse Vector-Excitation Speech Encoder

    NASA Technical Reports Server (NTRS)

    Davidson, Grant; Gersho, Allen

    1989-01-01

    Proposed pulse vector-excitation speech encoder (PVXC) encodes analog speech signals into digital representation for transmission or storage at rates below 5 kilobits per second. Produces high quality of reconstructed speech, but with less computation than required by comparable speech-encoding systems. Has some characteristics of multipulse linear predictive coding (MPLPC) and of code-excited linear prediction (CELP). System uses mathematical model of vocal tract in conjunction with set of excitation vectors and perceptually-based error criterion to synthesize natural-sounding speech.

  5. Chemical Space of DNA-Encoded Libraries.

    PubMed

    Franzini, Raphael M; Randolph, Cassie

    2016-07-28

    In recent years, DNA-encoded chemical libraries (DECLs) have attracted considerable attention as a potential discovery tool in drug development. Screening encoded libraries may offer advantages over conventional hit discovery approaches and has the potential to complement such methods in pharmaceutical research. As a result of the increased application of encoded libraries in drug discovery, a growing number of hit compounds are emerging in scientific literature. In this review we evaluate reported encoded library-derived structures and identify general trends of these compounds in relation to library design parameters. We in particular emphasize the combinatorial nature of these libraries. Generally, the reported molecules demonstrate the ability of this technology to afford hits suitable for further lead development, and on the basis of them, we derive guidelines for DECL design.

  6. A multifunctional rotary photoelectric encoder management system

    NASA Astrophysics Data System (ADS)

    Ye, Zunzhong; Ying, Yibin

    2005-11-01

    The rotary photoelectric encoder can be used in many fields, such as robot research, fruit assembly lines, and so on. If there have many photoelectric encoders in one system, it's difficult to manage them and acquire the right pulse number. So it's important to design a multifunctional management system. It includes a powerful microchip with high processing speed, assuring the acquisition precision of rotary pulse. It uses a special method to judge the rotary direction and will be competent for many occasions which rotary direction changes quickly. Considering encoder data transmission, the management system provides a serial port using RS-485 protocol to transmit current pulse data and rotary direction. It allows linking a maximum of 100 management systems using only two communication lines to up-systems and also configing the encoder counting pattern locally (using the keyboard) or remotely (through the computer).

  7. Cellobiohydrolase variants and polynucleotides encoding same

    DOEpatents

    Wogulis, Mark

    2013-09-24

    The present invention relates to variants of a parent cellobiohydrolase II. The present invention also relates to polynucleotides encoding the variants; nucleic acid constructs, vectors, and host cells comprising the polynucleotides; and methods of using the variants.

  8. Cellobiohydrolase variants and polynucleotides encoding same

    DOEpatents

    Wogulis, Mark

    2014-10-14

    The present invention relates to variants of a parent cellobiohydrolase II. The present invention also relates to polynucleotides encoding the variants; nucleic acid constructs, vectors, and host cells comprising the polynucleotides; and methods of using the variants.

  9. Cellobiohydrolase variants and polynucleotides encoding the same

    DOEpatents

    Wogulis, Mark

    2014-09-09

    The present invention relates to variants of a parent cellobiohydrolase. The present invention also relates to polynucleotides encoding the cellobiohydrolase variants; nucleic acid constructs, vectors, and host cells comprising the polynucleotides; and methods of using the cellobiohydrolase variants.

  10. Navigating and Mining modENCODE Data

    PubMed Central

    Boley, Nathan; Wan, Kenneth H.; Bickel, Peter J.; Celniker, Susan E.

    2014-01-01

    modENCODE was a 5 yr NHGRI funded project (2007– 2012) to map the function of every base in the genomes of worms and flies characterizing positions of modified histones and other chromatin marks, origins of DNA replication, RNA transcripts and the transcription factor binding sites that control gene expression. Here we describe the Drosophila modENCODE datasets and how best to access and use them for genome wide and individual gene studies. PMID:24636835

  11. A Manual for Encoding Probability Distributions.

    DTIC Science & Technology

    1978-09-01

    summary of the most significant information contained in the report. If the report contains a significant bibliography or literature survey, mention it...probability distri- bution. Some terms in the literature that are used synonymously to Encoding: Assessment, Assignment (used for single events in this...sessions conducted as parts of practical decision analyses as well as on experimental evidence in the literature . Probability encoding can be applied

  12. Nucleotide sequences encoding a thermostable alkaline protease

    DOEpatents

    Wilson, David B.; Lao, Guifang

    1998-01-01

    Nucleotide sequences, derived from a thermophilic actinomycete microorganism, which encode a thermostable alkaline protease are disclosed. Also disclosed are variants of the nucleotide sequences which encode a polypeptide having thermostable alkaline proteolytic activity. Recombinant thermostable alkaline protease or recombinant polypeptide may be obtained by culturing in a medium a host cell genetically engineered to contain and express a nucleotide sequence according to the present invention, and recovering the recombinant thermostable alkaline protease or recombinant polypeptide from the culture medium.

  13. Nucleotide sequences encoding a thermostable alkaline protease

    DOEpatents

    Wilson, D.B.; Lao, G.

    1998-01-06

    Nucleotide sequences, derived from a thermophilic actinomycete microorganism, which encode a thermostable alkaline protease are disclosed. Also disclosed are variants of the nucleotide sequences which encode a polypeptide having thermostable alkaline proteolytic activity. Recombinant thermostable alkaline protease or recombinant polypeptide may be obtained by culturing in a medium a host cell genetically engineered to contain and express a nucleotide sequence according to the present invention, and recovering the recombinant thermostable alkaline protease or recombinant polypeptide from the culture medium. 3 figs.

  14. Clustering of polarization-encoded images.

    PubMed

    Zallat, Jihad; Collet, Christophe; Takakura, Yoshitate

    2004-01-10

    Polarization-encoded imaging consists of the distributed measurements of polarization parameters for each pixel of an image. We address clustering of multidimensional polarization-encoded images. The spatial coherence of polarization information is considered. Two methods of analysis are proposed: polarization contrast enhancement and a more-sophisticated image-processing algorithm based on a Markovian model. The proposed algorithms are applied and validated with two different Mueller images acquired by a fully polarimetric imaging system.

  15. Neurally Encoding Time for Olfactory Navigation

    PubMed Central

    Park, In Jun; Hein, Andrew M.; Bobkov, Yuriy V.; Reidenbach, Matthew A.; Ache, Barry W.; Principe, Jose C.

    2016-01-01

    Accurately encoding time is one of the fundamental challenges faced by the nervous system in mediating behavior. We recently reported that some animals have a specialized population of rhythmically active neurons in their olfactory organs with the potential to peripherally encode temporal information about odor encounters. If these neurons do indeed encode the timing of odor arrivals, it should be possible to demonstrate that this capacity has some functional significance. Here we show how this sensory input can profoundly influence an animal’s ability to locate the source of odor cues in realistic turbulent environments—a common task faced by species that rely on olfactory cues for navigation. Using detailed data from a turbulent plume created in the laboratory, we reconstruct the spatiotemporal behavior of a real odor field. We use recurrence theory to show that information about position relative to the source of the odor plume is embedded in the timing between odor pulses. Then, using a parameterized computational model, we show how an animal can use populations of rhythmically active neurons to capture and encode this temporal information in real time, and use it to efficiently navigate to an odor source. Our results demonstrate that the capacity to accurately encode temporal information about sensory cues may be crucial for efficient olfactory navigation. More generally, our results suggest a mechanism for extracting and encoding temporal information from the sensory environment that could have broad utility for neural information processing. PMID:26730727

  16. Multichannel Compressive Sensing MRI Using Noiselet Encoding

    PubMed Central

    Pawar, Kamlesh; Egan, Gary; Zhang, Jingxin

    2015-01-01

    The incoherence between measurement and sparsifying transform matrices and the restricted isometry property (RIP) of measurement matrix are two of the key factors in determining the performance of compressive sensing (CS). In CS-MRI, the randomly under-sampled Fourier matrix is used as the measurement matrix and the wavelet transform is usually used as sparsifying transform matrix. However, the incoherence between the randomly under-sampled Fourier matrix and the wavelet matrix is not optimal, which can deteriorate the performance of CS-MRI. Using the mathematical result that noiselets are maximally incoherent with wavelets, this paper introduces the noiselet unitary bases as the measurement matrix to improve the incoherence and RIP in CS-MRI. Based on an empirical RIP analysis that compares the multichannel noiselet and multichannel Fourier measurement matrices in CS-MRI, we propose a multichannel compressive sensing (MCS) framework to take the advantage of multichannel data acquisition used in MRI scanners. Simulations are presented in the MCS framework to compare the performance of noiselet encoding reconstructions and Fourier encoding reconstructions at different acceleration factors. The comparisons indicate that multichannel noiselet measurement matrix has better RIP than that of its Fourier counterpart, and that noiselet encoded MCS-MRI outperforms Fourier encoded MCS-MRI in preserving image resolution and can achieve higher acceleration factors. To demonstrate the feasibility of the proposed noiselet encoding scheme, a pulse sequences with tailored spatially selective RF excitation pulses was designed and implemented on a 3T scanner to acquire the data in the noiselet domain from a phantom and a human brain. The results indicate that noislet encoding preserves image resolution better than Fouirer encoding. PMID:25965548

  17. Multichannel compressive sensing MRI using noiselet encoding.

    PubMed

    Pawar, Kamlesh; Egan, Gary; Zhang, Jingxin

    2015-01-01

    The incoherence between measurement and sparsifying transform matrices and the restricted isometry property (RIP) of measurement matrix are two of the key factors in determining the performance of compressive sensing (CS). In CS-MRI, the randomly under-sampled Fourier matrix is used as the measurement matrix and the wavelet transform is usually used as sparsifying transform matrix. However, the incoherence between the randomly under-sampled Fourier matrix and the wavelet matrix is not optimal, which can deteriorate the performance of CS-MRI. Using the mathematical result that noiselets are maximally incoherent with wavelets, this paper introduces the noiselet unitary bases as the measurement matrix to improve the incoherence and RIP in CS-MRI. Based on an empirical RIP analysis that compares the multichannel noiselet and multichannel Fourier measurement matrices in CS-MRI, we propose a multichannel compressive sensing (MCS) framework to take the advantage of multichannel data acquisition used in MRI scanners. Simulations are presented in the MCS framework to compare the performance of noiselet encoding reconstructions and Fourier encoding reconstructions at different acceleration factors. The comparisons indicate that multichannel noiselet measurement matrix has better RIP than that of its Fourier counterpart, and that noiselet encoded MCS-MRI outperforms Fourier encoded MCS-MRI in preserving image resolution and can achieve higher acceleration factors. To demonstrate the feasibility of the proposed noiselet encoding scheme, a pulse sequences with tailored spatially selective RF excitation pulses was designed and implemented on a 3T scanner to acquire the data in the noiselet domain from a phantom and a human brain. The results indicate that noislet encoding preserves image resolution better than Fouirer encoding.

  18. ERP Correlates of Encoding Success and Encoding Selectivity in Attention Switching

    PubMed Central

    Yeung, Nick

    2016-01-01

    Long-term memory encoding depends critically on effective processing of incoming information. The degree to which participants engage in effective encoding can be indexed in electroencephalographic (EEG) data by studying event-related potential (ERP) subsequent memory effects. The current study investigated ERP correlates of memory success operationalised with two different measures—memory selectivity and global memory—to assess whether previously observed ERP subsequent memory effects reflect focused encoding of task-relevant information (memory selectivity), general encoding success (global memory), or both. Building on previous work, the present study combined an attention switching paradigm—in which participants were presented with compound object-word stimuli and switched between attending to the object or the word across trials—with a later recognition memory test for those stimuli, while recording their EEG. Our results provided clear evidence that subsequent memory effects resulted from selective attentional focusing and effective top-down control (memory selectivity) in contrast to more general encoding success effects (global memory). Further analyses addressed the question of whether successful encoding depended on similar control mechanisms to those involved in attention switching. Interestingly, differences in the ERP correlates of attention switching and successful encoding, particularly during the poststimulus period, indicated that variability in encoding success occurred independently of prestimulus demands for top-down cognitive control. These results suggest that while effects of selective attention and selective encoding co-occur behaviourally their ERP correlates are at least partly dissociable. PMID:27907075

  19. ERP Correlates of Encoding Success and Encoding Selectivity in Attention Switching.

    PubMed

    Richter, Franziska R; Yeung, Nick

    2016-01-01

    Long-term memory encoding depends critically on effective processing of incoming information. The degree to which participants engage in effective encoding can be indexed in electroencephalographic (EEG) data by studying event-related potential (ERP) subsequent memory effects. The current study investigated ERP correlates of memory success operationalised with two different measures-memory selectivity and global memory-to assess whether previously observed ERP subsequent memory effects reflect focused encoding of task-relevant information (memory selectivity), general encoding success (global memory), or both. Building on previous work, the present study combined an attention switching paradigm-in which participants were presented with compound object-word stimuli and switched between attending to the object or the word across trials-with a later recognition memory test for those stimuli, while recording their EEG. Our results provided clear evidence that subsequent memory effects resulted from selective attentional focusing and effective top-down control (memory selectivity) in contrast to more general encoding success effects (global memory). Further analyses addressed the question of whether successful encoding depended on similar control mechanisms to those involved in attention switching. Interestingly, differences in the ERP correlates of attention switching and successful encoding, particularly during the poststimulus period, indicated that variability in encoding success occurred independently of prestimulus demands for top-down cognitive control. These results suggest that while effects of selective attention and selective encoding co-occur behaviourally their ERP correlates are at least partly dissociable.

  20. An encyclopedia of mouse DNA elements (Mouse ENCODE).

    PubMed

    Stamatoyannopoulos, John A; Snyder, Michael; Hardison, Ross; Ren, Bing; Gingeras, Thomas; Gilbert, David M; Groudine, Mark; Bender, Michael; Kaul, Rajinder; Canfield, Theresa; Giste, Erica; Johnson, Audra; Zhang, Mia; Balasundaram, Gayathri; Byron, Rachel; Roach, Vaughan; Sabo, Peter J; Sandstrom, Richard; Stehling, A Sandra; Thurman, Robert E; Weissman, Sherman M; Cayting, Philip; Hariharan, Manoj; Lian, Jin; Cheng, Yong; Landt, Stephen G; Ma, Zhihai; Wold, Barbara J; Dekker, Job; Crawford, Gregory E; Keller, Cheryl A; Wu, Weisheng; Morrissey, Christopher; Kumar, Swathi A; Mishra, Tejaswini; Jain, Deepti; Byrska-Bishop, Marta; Blankenberg, Daniel; Lajoie, Bryan R; Jain, Gaurav; Sanyal, Amartya; Chen, Kaun-Bei; Denas, Olgert; Taylor, James; Blobel, Gerd A; Weiss, Mitchell J; Pimkin, Max; Deng, Wulan; Marinov, Georgi K; Williams, Brian A; Fisher-Aylor, Katherine I; Desalvo, Gilberto; Kiralusha, Anthony; Trout, Diane; Amrhein, Henry; Mortazavi, Ali; Edsall, Lee; McCleary, David; Kuan, Samantha; Shen, Yin; Yue, Feng; Ye, Zhen; Davis, Carrie A; Zaleski, Chris; Jha, Sonali; Xue, Chenghai; Dobin, Alex; Lin, Wei; Fastuca, Meagan; Wang, Huaien; Guigo, Roderic; Djebali, Sarah; Lagarde, Julien; Ryba, Tyrone; Sasaki, Takayo; Malladi, Venkat S; Cline, Melissa S; Kirkup, Vanessa M; Learned, Katrina; Rosenbloom, Kate R; Kent, W James; Feingold, Elise A; Good, Peter J; Pazin, Michael; Lowdon, Rebecca F; Adams, Leslie B

    2012-08-13

    To complement the human Encyclopedia of DNA Elements (ENCODE) project and to enable a broad range of mouse genomics efforts, the Mouse ENCODE Consortium is applying the same experimental pipelines developed for human ENCODE to annotate the mouse genome.

  1. The ENCODE Project at UC Santa Cruz.

    PubMed

    Thomas, Daryl J; Rosenbloom, Kate R; Clawson, Hiram; Hinrichs, Angie S; Trumbower, Heather; Raney, Brian J; Karolchik, Donna; Barber, Galt P; Harte, Rachel A; Hillman-Jackson, Jennifer; Kuhn, Robert M; Rhead, Brooke L; Smith, Kayla E; Thakkapallayil, Archana; Zweig, Ann S; Haussler, David; Kent, W James

    2007-01-01

    The goal of the Encyclopedia Of DNA Elements (ENCODE) Project is to identify all functional elements in the human genome. The pilot phase is for comparison of existing methods and for the development of new methods to rigorously analyze a defined 1% of the human genome sequence. Experimental datasets are focused on the origin of replication, DNase I hypersensitivity, chromatin immunoprecipitation, promoter function, gene structure, pseudogenes, non-protein-coding RNAs, transcribed RNAs, multiple sequence alignment and evolutionarily constrained elements. The ENCODE project at UCSC website (http://genome.ucsc.edu/ENCODE) is the primary portal for the sequence-based data produced as part of the ENCODE project. In the pilot phase of the project, over 30 labs provided experimental results for a total of 56 browser tracks supported by 385 database tables. The site provides researchers with a number of tools that allow them to visualize and analyze the data as well as download data for local analyses. This paper describes the portal to the data, highlights the data that has been made available, and presents the tools that have been developed within the ENCODE project. Access to the data and types of interactive analysis that are possible are illustrated through supplemental examples.

  2. Noise level and MPEG-2 encoder statistics

    NASA Astrophysics Data System (ADS)

    Lee, Jungwoo

    1997-01-01

    Most software in the movie and broadcasting industries are still in analog film or tape format, which typically contains random noise that originated from film, CCD camera, and tape recording. The performance of the MPEG-2 encoder may be significantly degraded by the noise. It is also affected by the scene type that includes spatial and temporal activity. The statistical property of noise originating from camera and tape player is analyzed and the models for the two types of noise are developed. The relationship between the noise, the scene type, and encoder statistics of a number of MPEG-2 parameters such as motion vector magnitude, prediction error, and quant scale are discussed. This analysis is intended to be a tool for designing robust MPEG encoding algorithms such as preprocessing and rate control.

  3. Vector Adaptive/Predictive Encoding Of Speech

    NASA Technical Reports Server (NTRS)

    Chen, Juin-Hwey; Gersho, Allen

    1989-01-01

    Vector adaptive/predictive technique for digital encoding of speech signals yields decoded speech of very good quality after transmission at coding rate of 9.6 kb/s and of reasonably good quality at 4.8 kb/s. Requires 3 to 4 million multiplications and additions per second. Combines advantages of adaptive/predictive coding, and code-excited linear prediction, yielding speech of high quality but requires 600 million multiplications and additions per second at encoding rate of 4.8 kb/s. Vector adaptive/predictive coding technique bridges gaps in performance and complexity between adaptive/predictive coding and code-excited linear prediction.

  4. Gene encoding acetyl-coenzyme A carboxylase

    DOEpatents

    Roessler, P.G.; Ohlrogge, J.B.

    1996-09-24

    A DNA encoding an acetyl-coenzyme A carboxylase (ACCase) from a photosynthetic organism and functional derivatives are disclosed which are resistant to inhibition from certain herbicides. This gene can be placed in organisms to increase their fatty acid content or to render them resistant to certain herbicides. 5 figs.

  5. Retrieval during Learning Facilitates Subsequent Memory Encoding

    ERIC Educational Resources Information Center

    Pastotter, Bernhard; Schicker, Sabine; Niedernhuber, Julia; Bauml, Karl-Heinz T.

    2011-01-01

    In multiple-list learning, retrieval during learning has been suggested to improve recall of the single lists by enhancing list discrimination and, at test, reducing interference. Using electrophysiological, oscillatory measures of brain activity, we examined to what extent retrieval during learning facilitates list encoding. Subjects studied 5…

  6. Encoding and Retrieval During Bimanual Rhythmic Coordination

    ERIC Educational Resources Information Center

    Shockley, Kevin; Turvey, Michael T.

    2005-01-01

    In 2 experiments, bimanual 1:1 rhythmic coordination was performed concurrently with encoding or retrieval of word lists. Effects of divided attention (DA) on coordination were indexed by changes in mean relative phase and recurrence measures of shared activity between the 2 limbs. Effects of DA on memory were indexed by deficits in recall…

  7. Gene encoding acetyl-coenzyme A carboxylase

    DOEpatents

    Roessler, Paul G.; Ohlrogge, John B.

    1996-01-01

    A DNA encoding an acetyl-coenzyme A carboxylase (ACCase) from a photosynthetic organism and functional derivatives thereof which are resistant to inhibition from certain herbicides. This gene can be placed in organisms to increase their fatty acid content or to render them resistant to certain herbicides.

  8. Encoders for block-circulant LDPC codes

    NASA Technical Reports Server (NTRS)

    Divsalar, Dariush (Inventor); Abbasfar, Aliazam (Inventor); Jones, Christopher R. (Inventor); Dolinar, Samuel J. (Inventor); Thorpe, Jeremy C. (Inventor); Andrews, Kenneth S. (Inventor); Yao, Kung (Inventor)

    2009-01-01

    Methods and apparatus to encode message input symbols in accordance with an accumulate-repeat-accumulate code with repetition three or four are disclosed. Block circulant matrices are used. A first method and apparatus make use of the block-circulant structure of the parity check matrix. A second method and apparatus use block-circulant generator matrices.

  9. Young Children's Automatic Encoding of Social Categories

    ERIC Educational Resources Information Center

    Weisman, Kara; Johnson, Marissa V.; Shutts, Kristin

    2015-01-01

    The present research investigated young children's automatic encoding of two social categories that are highly relevant to adults: gender and race. Three- to 6-year-old participants learned facts about unfamiliar target children who varied in either gender or race and were asked to remember which facts went with which targets. When participants…

  10. Recombinant DNA encoding a desulfurization biocatalyst

    DOEpatents

    Rambosek, J.; Piddington, C.S.; Kovacevich, B.R.; Young, K.D.; Denome, S.A.

    1994-10-18

    This invention relates to a recombinant DNA molecule containing a gene or genes which encode a biocatalyst capable of desulfurizing a fossil fuel which contains organic sulfur molecules. For example, the present invention encompasses a recombinant DNA molecule containing a gene or genes of a strain of Rhodococcus rhodochrous. 13 figs.

  11. Recombinant DNA encoding a desulfurization biocatalyst

    DOEpatents

    Rambosek, John; Piddington, Chris S.; Kovacevich, Brian R.; Young, Kevin D.; Denome, Sylvia A.

    1994-01-01

    This invention relates to a recombinant DNA molecule containing a gene or genes which encode a biocatalyst capable of desulfurizing a fossil fuel which contains organic sulfur molecules. For example, the present invention encompasses a recombinant DNA molecule containing a gene or genes of a strain of Rhodococcus rhodochrous.

  12. Design Primer for Reed-Solomon Encoders

    NASA Technical Reports Server (NTRS)

    Perlman, M.; Lee, J. J.

    1985-01-01

    Design and operation of Reed-Solomon (RS) encoders discussed in document prepared as instruction manual for computer designers and others in dataprocessing field. Conventional and Berlekamp architectures compared. Engineers who equip computer memory chips with burst-error and dropout detection and correction find report especially useful.

  13. Matrix Encoding For Correction Of Errors

    NASA Technical Reports Server (NTRS)

    Dotson, Ronald S.

    1991-01-01

    Method of matrix encoding and associated decoding provides for correction of errors in digital data recorded on magnetic tape. Intended specifically for use with commercial control circuit board and associated software making it possible to use video cassette recorder as backup for hard-disk memory of personal computer.

  14. Comparative Analysis of Chromosome-Encoded Microcins

    PubMed Central

    Poey, María Eloisa; Azpiroz, María F.; Laviña, Magela

    2006-01-01

    Microcins are ribosomally synthesized peptide antibiotics that are produced by enterobacterial strains. Although the first studies concentrated on plasmid-encoded activities, in the last years three chromosome-encoded microcins have been described: H47, E492, and M. Here, a new microcin, I47, is presented as a fourth member of this group. Common features exhibited by chromosome-encoded microcins were searched for. The comparison of the genetic clusters responsible for microcin production revealed a preserved general scheme. The clusters essentially comprise a pair of activity-immunity genes which determine antibiotic specificity and a set of microcin maturation and secretion genes which are invariably present and whose protein products are highly homologous among the different producing strains. A strict functional relationship between the maturation and secretion pathways of microcins H47, I47, and E492 was demonstrated through genetic analyses, which included heterologous complementation assays. The peptide precursors of these microcins share a maturation process which implies the addition of a catecholate siderophore of the salmochelin type. Microcins thus acquire the ability to enter gram-negative cells through the catechol receptors. In addition, they employ a common mode of secretion to reach the external milieu by means of a type I export apparatus. The results presented herein lead us to propose that chromosome-encoded microcins constitute a defined subgroup of peptide antibiotics which are strictly related by their modes of synthesis, secretion, and uptake. PMID:16569859

  15. How Attention Modulates Encoding of Dynamic Stimuli

    PubMed Central

    Oren, Noga; Shapira-Lichter, Irit; Lerner, Yulia; Tarrasch, Ricardo; Hendler, Talma; Giladi, Nir; Ash, Elissa L.

    2016-01-01

    When encoding a real-life, continuous stimulus, the same neural circuits support processing and integration of prior as well as new incoming information. This ongoing interplay is modulated by attention, and is evident in regions such as the prefrontal cortex section of the task positive network (TPN), and in the posterior cingulate cortex (PCC), a hub of the default mode network (DMN). Yet the exact nature of such modulation is still unclear. To investigate this issue, we utilized an fMRI task that employed movies as the encoded stimuli and manipulated attentional load via an easy or hard secondary task that was performed simultaneously with encoding. Results showed increased intersubject correlation (inter-SC) levels when encoding movies in a condition of high, as compared to low attentional load. This was evident in bilateral ventrolateral and dorsomedial prefrontal cortices and the dorsal PCC (dPCC). These regions became more attuned to the combination of the movie and the secondary task as the attentional demand of the latter increased. Activation analyses revealed that at higher load the prefrontal TPN regions were more activated, whereas the dPCC was more deactivated. Attentional load also influenced connectivity within and between the networks. At high load the dPCC was anti-correlated to the prefrontal regions, which were more functionally coherent amongst themselves. Finally and critically, greater inter-SC in the dPCC at high load during encoding predicted lower memory strength when that information was retrieved. This association between inter-SC levels and memory strength suggest that as attentional demands increased, the dPCC was more attuned to the secondary task at the expense of the encoded stimulus, thus weakening memory for the encoded stimulus. Together, our findings show that attentional load modulated the function of core TPN and DMN regions. Furthermore, the observed relationship between memory strength and the modulation of the dPCC points

  16. JPEG 2000 Encoding with Perceptual Distortion Control

    NASA Technical Reports Server (NTRS)

    Watson, Andrew B.; Liu, Zhen; Karam, Lina J.

    2008-01-01

    An alternative approach has been devised for encoding image data in compliance with JPEG 2000, the most recent still-image data-compression standard of the Joint Photographic Experts Group. Heretofore, JPEG 2000 encoding has been implemented by several related schemes classified as rate-based distortion-minimization encoding. In each of these schemes, the end user specifies a desired bit rate and the encoding algorithm strives to attain that rate while minimizing a mean squared error (MSE). While rate-based distortion minimization is appropriate for transmitting data over a limited-bandwidth channel, it is not the best approach for applications in which the perceptual quality of reconstructed images is a major consideration. A better approach for such applications is the present alternative one, denoted perceptual distortion control, in which the encoding algorithm strives to compress data to the lowest bit rate that yields at least a specified level of perceptual image quality. Some additional background information on JPEG 2000 is prerequisite to a meaningful summary of JPEG encoding with perceptual distortion control. The JPEG 2000 encoding process includes two subprocesses known as tier-1 and tier-2 coding. In order to minimize the MSE for the desired bit rate, a rate-distortion- optimization subprocess is introduced between the tier-1 and tier-2 subprocesses. In tier-1 coding, each coding block is independently bit-plane coded from the most-significant-bit (MSB) plane to the least-significant-bit (LSB) plane, using three coding passes (except for the MSB plane, which is coded using only one "clean up" coding pass). For M bit planes, this subprocess involves a total number of (3M - 2) coding passes. An embedded bit stream is then generated for each coding block. Information on the reduction in distortion and the increase in the bit rate associated with each coding pass is collected. This information is then used in a rate-control procedure to determine the

  17. Encoding Orientation and the Remembering of Schizophrenic Young Adults

    ERIC Educational Resources Information Center

    Koh, Soon D.; Peterson, Rolf A.

    1978-01-01

    This research examines different types of encoding strategies, in addition to semantic and organizational encodings, and their effects on schizophrenics' remembering. Based on Craik and Lockhart (1972), i.e., memory performance is a function of depth of encoding processing, this analysis compares schizophrenics' encoding processing with that of…

  18. Amygdala neurons differentially encode motivation and reinforcement.

    PubMed

    Tye, Kay M; Janak, Patricia H

    2007-04-11

    Lesion studies demonstrate that the basolateral amygdala complex (BLA) is important for assigning motivational significance to sensory stimuli, but little is known about how this information is encoded. We used in vivo electrophysiology procedures to investigate how the amygdala encodes motivating and reinforcing properties of cues that induce reinstatement of reward-seeking behavior. Two groups of rats were trained to respond to a sucrose reward. The "paired" group was trained with a reward-predictive cue, whereas the "unpaired" group was trained with a randomly presented cue. Both groups underwent identical extinction and reinstatement procedures during which the reward was withheld. The proportion of neurons that were phasically cue responsive during reinstatement was significantly higher in the paired group (46 of 100) than in the unpaired group (8 of 112). Cues that induce reward-seeking behavior can do so by acting as incentives or reinforcers. Distinct populations of neurons responded to the cue in trials in which the cue acted as an incentive, triggering a motivated reward-seeking state, or as a reinforcer, supporting continued instrumental responding. The incentive motivation-encoding population of neurons (34 of 46 cue-responsive neurons; 74%) extinguished in temporal agreement with a decrease in the rate of instrumental responding. The conditioned reinforcement-encoding population of neurons (12 of 46 cue-responsive neurons; 26%) maintained their response for the duration of cue-reinforced instrumental responding. These data demonstrate that separate populations of cue-responsive neurons in the BLA encode the motivating or reinforcing properties of a cue previously associated with a reward.

  19. Asymmetric synthesis using chiral-encoded metal

    PubMed Central

    Yutthalekha, Thittaya; Wattanakit, Chularat; Lapeyre, Veronique; Nokbin, Somkiat; Warakulwit, Chompunuch; Limtrakul, Jumras; Kuhn, Alexander

    2016-01-01

    The synthesis of chiral compounds is of crucial importance in many areas of society and science, including medicine, biology, chemistry, biotechnology and agriculture. Thus, there is a fundamental interest in developing new approaches for the selective production of enantiomers. Here we report the use of mesoporous metal structures with encoded geometric chiral information for inducing asymmetry in the electrochemical synthesis of mandelic acid as a model molecule. The chiral-encoded mesoporous metal, obtained by the electrochemical reduction of platinum salts in the presence of a liquid crystal phase and the chiral template molecule, perfectly retains the chiral information after removal of the template. Starting from a prochiral compound we demonstrate enantiomeric excess of the (R)-enantiomer when using (R)-imprinted electrodes and vice versa for the (S)-imprinted ones. Moreover, changing the amount of chiral cavities in the material allows tuning the enantioselectivity. PMID:27562028

  20. Asymmetric synthesis using chiral-encoded metal

    NASA Astrophysics Data System (ADS)

    Yutthalekha, Thittaya; Wattanakit, Chularat; Lapeyre, Veronique; Nokbin, Somkiat; Warakulwit, Chompunuch; Limtrakul, Jumras; Kuhn, Alexander

    2016-08-01

    The synthesis of chiral compounds is of crucial importance in many areas of society and science, including medicine, biology, chemistry, biotechnology and agriculture. Thus, there is a fundamental interest in developing new approaches for the selective production of enantiomers. Here we report the use of mesoporous metal structures with encoded geometric chiral information for inducing asymmetry in the electrochemical synthesis of mandelic acid as a model molecule. The chiral-encoded mesoporous metal, obtained by the electrochemical reduction of platinum salts in the presence of a liquid crystal phase and the chiral template molecule, perfectly retains the chiral information after removal of the template. Starting from a prochiral compound we demonstrate enantiomeric excess of the (R)-enantiomer when using (R)-imprinted electrodes and vice versa for the (S)-imprinted ones. Moreover, changing the amount of chiral cavities in the material allows tuning the enantioselectivity.

  1. Nucleic acid compositions and the encoding proteins

    DOEpatents

    Preston, III, James F.; Chow, Virginia; Nong, Guang; Rice, John D.; St. John, Franz J.

    2014-09-02

    The subject invention provides at least one nucleic acid sequence encoding an aldouronate-utilization regulon isolated from Paenibacillus sp. strain JDR-2, a bacterium which efficiently utilizes xylan and metabolizes aldouronates (methylglucuronoxylosaccharides). The subject invention also provides a means for providing a coordinately regulated process in which xylan depolymerization and product assimilation are coupled in Paenibacillus sp. strain JDR-2 to provide a favorable system for the conversion of lignocellulosic biomass to biobased products. Additionally, the nucleic acid sequences encoding the aldouronate-utilization regulon can be used to transform other bacteria to form organisms capable of producing a desired product (e.g., ethanol, 1-butanol, acetoin, 2,3-butanediol, 1,3-propanediol, succinate, lactate, acetate, malate or alanine) from lignocellulosic biomass.

  2. DNA-Encoded Dynamic Combinatorial Chemical Libraries.

    PubMed

    Reddavide, Francesco V; Lin, Weilin; Lehnert, Sarah; Zhang, Yixin

    2015-06-26

    Dynamic combinatorial chemistry (DCC) explores the thermodynamic equilibrium of reversible reactions. Its application in the discovery of protein binders is largely limited by difficulties in the analysis of complex reaction mixtures. DNA-encoded chemical library (DECL) technology allows the selection of binders from a mixture of up to billions of different compounds; however, experimental results often show low a signal-to-noise ratio and poor correlation between enrichment factor and binding affinity. Herein we describe the design and application of DNA-encoded dynamic combinatorial chemical libraries (EDCCLs). Our experiments have shown that the EDCCL approach can be used not only to convert monovalent binders into high-affinity bivalent binders, but also to cause remarkably enhanced enrichment of potent bivalent binders by driving their in situ synthesis. We also demonstrate the application of EDCCLs in DNA-templated chemical reactions.

  3. Temporal information encoding in dynamic memristive devices

    SciTech Connect

    Ma, Wen; Chen, Lin; Du, Chao; Lu, Wei D.

    2015-11-09

    We show temporal and frequency information can be effectively encoded in memristive devices with inherent short-term dynamics. Ag/Ag{sub 2}S/Pd based memristive devices with low programming voltage (∼100 mV) were fabricated and tested. At weak programming conditions, the devices exhibit inherent decay due to spontaneous diffusion of the Ag atoms. When the devices were subjected to pulse train inputs emulating different spiking patterns, the switching probability distribution function diverges from the standard Poisson distribution and evolves according to the input pattern. The experimentally observed switching probability distributions and the associated cumulative probability functions can be well-explained using a model accounting for the short-term decay effects. Such devices offer an intriguing opportunity to directly encode neural signals for neural information storage and analysis.

  4. Determination of Laser Tracker Angle Encoder Errors

    NASA Astrophysics Data System (ADS)

    Nasr, Karim M.; Hughes, Ben; Forbes, Alistair; Lewis, Andrew

    2014-08-01

    Errors in the angle encoders of a laser tracker may potentially produce large errors in long range coordinate measurements. To determine the azimuth angle encoder errors and verify their values stored in the tracker's internal error map, several methodologies were evaluated, differing in complexity, measurement time and the need for specialised measuring equipment. These methodologies are: an artefact-based technique developed by NIST; a multi-target network technique developed by NPL; and the classical precision angular indexing table technique. It is shown that the three methodologies agree within their respective measurement uncertainties and that the NPL technique has the advantages of a short measurement time and no reliance on specialised measurement equipment or artefacts.

  5. Encoded Dynamical Recoupling with Shaped Pulses

    NASA Astrophysics Data System (ADS)

    Li, Yunfan; Lidar, Daniel A.; Pryadko, Leonid P.

    2008-03-01

    Encoded Dynamical Recoupling is a passive error correction techique which can be used to enhance the performance of a quantum error correction code (QECC) against low-frequency component of the thermal bath. The elements of the stabilizer group are used in the decoupling cycle which makes the encoded logic operations fault-tolerant. We studied the effectiveness of this techique both analytically and numerically for several three- and five-qubit codes, with decoupling sequences utilizing either Gaussian or self-refocusing pulse shapes. When logic pulses are intercalated between the decoupling cycles, the technique may be very effective in cancelling constant perturbation terms, but its performance is much weaker against a time-dependent perturbation simulated as a classical correlated noise. The decoupling accuracy can be substantially improved if logic is applied slowly and concurrently with the decoupling, so that a certain adiabaticity condition is satisfied.

  6. Genetically Encoded Voltage Indicators in Circulation Research

    PubMed Central

    Kaestner, Lars; Tian, Qinghai; Kaiser, Elisabeth; Xian, Wenying; Müller, Andreas; Oberhofer, Martin; Ruppenthal, Sandra; Sinnecker, Daniel; Tsutsui, Hidekazu; Miyawaki, Atsushi; Moretti, Alessandra; Lipp, Peter

    2015-01-01

    Membrane potentials display the cellular status of non-excitable cells and mediate communication between excitable cells via action potentials. The use of genetically encoded biosensors employing fluorescent proteins allows a non-invasive biocompatible way to read out the membrane potential in cardiac myocytes and other cells of the circulation system. Although the approaches to design such biosensors date back to the time when the first fluorescent-protein based Förster Resonance Energy Transfer (FRET) sensors were constructed, it took 15 years before reliable sensors became readily available. Here, we review different developments of genetically encoded membrane potential sensors. Furthermore, it is shown how such sensors can be used in pharmacological screening applications as well as in circulation related basic biomedical research. Potentials and limitations will be discussed and perspectives of possible future developments will be provided. PMID:26370981

  7. Storing data encoded DNA in living organisms

    DOEpatents

    Wong; Pak C. , Wong; Kwong K. , Foote; Harlan P.

    2006-06-06

    Current technologies allow the generation of artificial DNA molecules and/or the ability to alter the DNA sequences of existing DNA molecules. With a careful coding scheme and arrangement, it is possible to encode important information as an artificial DNA strand and store it in a living host safely and permanently. This inventive technology can be used to identify origins and protect R&D investments. It can also be used in environmental research to track generations of organisms and observe the ecological impact of pollutants. Today, there are microorganisms that can survive under extreme conditions. As well, it is advantageous to consider multicellular organisms as hosts for stored information. These living organisms can provide as memory housing and protection for stored data or information. The present invention provides well for data storage in a living organism wherein at least one DNA sequence is encoded to represent data and incorporated into a living organism.

  8. Gene encoding herbicide safener binding protein

    SciTech Connect

    Walton, J.D.; Scott-Craig, J.S.

    1999-10-26

    The cDNA encoding safener binding protein (SafBP), also referred to as SBP1, is presented. The deduced amino acid sequence is provided. Methods of making and using SBP1 and SafBP to alter a plant's sensitivity to certain herbicides or a plant's responsiveness to certain safeners are also provided, as well as expression vectors, transgenic plants or other organisms transfected with vectors and seeds from the plants.

  9. Genetically Encoded Voltage Indicators: Opportunities and Challenges

    PubMed Central

    Yang, Helen H.

    2016-01-01

    A longstanding goal in neuroscience is to understand how spatiotemporal patterns of neuronal electrical activity underlie brain function, from sensory representations to decision making. An emerging technology for monitoring electrical dynamics, voltage imaging using genetically encoded voltage indicators (GEVIs), couples the power of genetics with the advantages of light. Here, we review the properties that determine indicator performance and applicability, discussing both recent progress and technical limitations. We then consider GEVI applications, highlighting studies that have already deployed GEVIs for biological discovery. We also examine which classes of biological questions GEVIs are primed to address and which ones are beyond their current capabilities. As GEVIs are further developed, we anticipate that they will become more broadly used by the neuroscience community to eavesdrop on brain activity with unprecedented spatiotemporal resolution. SIGNIFICANCE STATEMENT Genetically encoded voltage indicators are engineered light-emitting protein sensors that typically report neuronal voltage dynamics as changes in brightness. In this review, we systematically discuss the current state of this emerging method, considering both its advantages and limitations for imaging neural activity. We also present recent applications of this technology and discuss what is feasible now and what we anticipate will become possible with future indicator development. This review will inform neuroscientists of recent progress in the field and help potential users critically evaluate the suitability of genetically encoded voltage indicator imaging to answer their specific biological questions. PMID:27683896

  10. Nucleic acids encoding human trithorax protein

    DOEpatents

    Evans, Glen A.; Djabali, Malek; Selleri, Licia; Parry, Pauline

    2001-01-01

    In accordance with the present invention, there is provided an isolated peptide having the characteristics of human trithorax protein (as well as DNA encoding same, antisense DNA derived therefrom and antagonists therefor). The invention peptide is characterized by having a DNA binding domain comprising multiple zinc fingers and at least 40% amino acid identity with respect to the DNA binding domain of Drosophila trithorax protein and at least 70% conserved sequence with respect to the DNA binding domain of Drosophila trithorax protein, and wherein said peptide is encoded by a gene located at chromosome 11 of the human genome at q23. Also provided are methods for the treatment of subject(s) suffering from immunodeficiency, developmental abnormality, inherited disease, or cancer by administering to said subject a therapeutically effective amount of one of the above-described agents (i.e., peptide, antagonist therefor, DNA encoding said peptide or antisense DNA derived therefrom). Also provided is a method for the diagnosis, in a subject, of immunodeficiency, developmental abnormality, inherited disease, or cancer associated with disruption of chromosome 11 at q23.

  11. Encoding and decoding messages with chaotic lasers

    SciTech Connect

    Alsing, P.M.; Gavrielides, A.; Kovanis, V.; Roy, R.; Thornburg, K.S. Jr.

    1997-12-01

    We investigate the structure of the strange attractor of a chaotic loss-modulated solid-state laser utilizing return maps based on a combination of intensity maxima and interspike intervals, as opposed to those utilizing Poincar{acute e} sections defined by the intensity maxima of the laser ({dot I}=0,{umlt I}{lt}0) alone. We find both experimentally and numerically that a simple, intrinsic relationship exists between an intensity maximum and the pair of preceding and succeeding interspike intervals. In addition, we numerically investigate encoding messages on the output of a chaotic transmitter laser and its subsequent decoding by a similar receiver laser. By exploiting the relationship between the intensity maxima and the interspike intervals, we demonstrate that the method utilized to encode the message is vital to the system{close_quote}s ability to hide the signal from unwanted deciphering. In this work alternative methods are studied in order to encode messages by modulating the magnitude of pumping of the transmitter laser and also by driving its loss modulation with more than one frequency. {copyright} {ital 1997} {ital The American Physical Society}

  12. Neural signals encoding shifts in beliefs

    PubMed Central

    Schwartenbeck, Philipp; FitzGerald, Thomas H.B.; Dolan, Ray

    2016-01-01

    Dopamine is implicated in a diverse range of cognitive functions including cognitive flexibility, task switching, signalling novel or unexpected stimuli as well as advance information. There is also longstanding line of thought that links dopamine with belief formation and, crucially, aberrant belief formation in psychosis. Integrating these strands of evidence would suggest that dopamine plays a central role in belief updating and more specifically in encoding of meaningful information content in observations. The precise nature of this relationship has remained unclear. To directly address this question we developed a paradigm that allowed us to decompose two distinct types of information content, information-theoretic surprise that reflects the unexpectedness of an observation, and epistemic value that induces shifts in beliefs or, more formally, Bayesian surprise. Using functional magnetic-resonance imaging in humans we show that dopamine-rich midbrain regions encode shifts in beliefs whereas surprise is encoded in prefrontal regions, including the pre-supplementary motor area and dorsal cingulate cortex. By linking putative dopaminergic activity to belief updating these data provide a link to false belief formation that characterises hyperdopaminergic states associated with idiopathic and drug induced psychosis. PMID:26520774

  13. Plasmid-Encoded Iron Uptake Systems.

    PubMed

    Di Lorenzo, Manuela; Stork, Michiel

    2014-12-01

    Plasmids confer genetic information that benefits the bacterial cells containing them. In pathogenic bacteria, plasmids often harbor virulence determinants that enhance the pathogenicity of the bacterium. The ability to acquire iron in environments where it is limited, for instance the eukaryotic host, is a critical factor for bacterial growth. To acquire iron, bacteria have evolved specific iron uptake mechanisms. These systems are often chromosomally encoded, while those that are plasmid-encoded are rare. Two main plasmid types, ColV and pJM1, have been shown to harbor determinants that increase virulence by providing the cell with essential iron for growth. It is clear that these two plasmid groups evolved independently from each other since they do not share similarities either in the plasmid backbones or in the iron uptake systems they harbor. The siderophores aerobactin and salmochelin that are found on ColV plasmids fall in the hydroxamate and catechol group, respectively, whereas both functional groups are present in the anguibactin siderophore, the only iron uptake system found on pJM1-type plasmids. Besides siderophore-mediated iron uptake, ColV plasmids carry additional genes involved in iron metabolism. These systems include ABC transporters, hemolysins, and a hemoglobin protease. ColV- and pJM1-like plasmids have been shown to confer virulence to their bacterial host, and this trait can be completely ascribed to their encoded iron uptake systems.

  14. Dual-channel spectrally encoded endoscopic probe

    PubMed Central

    Engel, Guy; Genish, Hadar; Rosenbluh, Michael; Yelin, Dvir

    2012-01-01

    High quality imaging through sub-millimeter endoscopic probes provides clinicians with valuable diagnostics capabilities in hard to reach locations within the body. Spectrally encoded endoscopy (SEE) has been shown promising for such task; however, challenging probe fabrication and high speckle noise had prevented its testing in in vivo studies. Here we demonstrate a novel miniature SEE probe which incorporates some of the recent progress in spectrally encoded technology into a compact and robust endoscopic system. A high-quality miniature diffraction grating was fabricated using automated femtosecond laser cutting from a large bulk grating. Using one spectrally encoded channel for imaging and a separate channel for incoherent illumination, the new system has large depth of field, negligible back reflections and well controlled speckle noise which depends on the core diameter of the illumination fiber. Moreover, by using a larger imaging channel, higher groove density grating, shorter wavelength and broader spectrum, the new endoscopic system now allow significant improvements in almost all imaging parameter compared to previous systems, through an ultra-miniature endoscopic probe. PMID:22876349

  15. Dual-channel spectrally encoded endoscopic probe.

    PubMed

    Engel, Guy; Genish, Hadar; Rosenbluh, Michael; Yelin, Dvir

    2012-08-01

    High quality imaging through sub-millimeter endoscopic probes provides clinicians with valuable diagnostics capabilities in hard to reach locations within the body. Spectrally encoded endoscopy (SEE) has been shown promising for such task; however, challenging probe fabrication and high speckle noise had prevented its testing in in vivo studies. Here we demonstrate a novel miniature SEE probe which incorporates some of the recent progress in spectrally encoded technology into a compact and robust endoscopic system. A high-quality miniature diffraction grating was fabricated using automated femtosecond laser cutting from a large bulk grating. Using one spectrally encoded channel for imaging and a separate channel for incoherent illumination, the new system has large depth of field, negligible back reflections and well controlled speckle noise which depends on the core diameter of the illumination fiber. Moreover, by using a larger imaging channel, higher groove density grating, shorter wavelength and broader spectrum, the new endoscopic system now allow significant improvements in almost all imaging parameter compared to previous systems, through an ultra-miniature endoscopic probe.

  16. Absolute Position Encoders With Vertical Image Binning

    NASA Technical Reports Server (NTRS)

    Leviton, Douglas B.

    2005-01-01

    Improved optoelectronic patternrecognition encoders that measure rotary and linear 1-dimensional positions at conversion rates (numbers of readings per unit time) exceeding 20 kHz have been invented. Heretofore, optoelectronic pattern-recognition absoluteposition encoders have been limited to conversion rates <15 Hz -- too low for emerging industrial applications in which conversion rates ranging from 1 kHz to as much as 100 kHz are required. The high conversion rates of the improved encoders are made possible, in part, by use of vertically compressible or binnable (as described below) scale patterns in combination with modified readout sequences of the image sensors [charge-coupled devices (CCDs)] used to read the scale patterns. The modified readout sequences and the processing of the images thus read out are amenable to implementation by use of modern, high-speed, ultra-compact microprocessors and digital signal processors or field-programmable gate arrays. This combination of improvements makes it possible to greatly increase conversion rates through substantial reductions in all three components of conversion time: exposure time, image-readout time, and image-processing time.

  17. Digital raster timing encoder-decoder

    NASA Astrophysics Data System (ADS)

    Gennetten, E. W.; Gomez, D. A.

    1984-06-01

    The invention presents a digital raster timing encoder/decoder system wherein television raster synchronization pulses and other timing pulses and information data are generated. The invention comprises a digital clock source having coding means which combined with the clock source encodes preselected digital signals containing information on raster synchronization control and timing, and also any other information data that is desired. The encoded signal output is transmitted either directly or via some special transmission link, for example by use of a Manchester Decoder clock multiplier system, to a receiving and decoding means. The received signal is decoded to create timing signals for operation control of the video television scanning system, and to read out other desired digital data that has been also transmitted within the signal. The system takes advantage of the fact that control signals of conventional synchronization pulses contain large deadband areas within which additional data information may be placed. Such additional digital information may be used to add other control pulse capability, or to add information transmission capability. A principle feature of the system is that only a single channel is needed to transmit synchronization pulses and any additional timing pulses or information of interest.

  18. Encoded libraries of chemically modified peptides.

    PubMed

    Heinis, Christian; Winter, Greg

    2015-06-01

    The use of powerful technologies for generating and screening DNA-encoded protein libraries has helped drive the development of proteins as pharmaceutical ligands. However the development of peptides as pharmaceutical ligands has been more limited. Although encoded peptide libraries are typically several orders of magnitude larger than classical chemical libraries, can be more readily screened, and can give rise to higher affinity ligands, their use as pharmaceutical ligands is limited by their intrinsic properties. Two of the intrinsic limitations include the rotational flexibility of the peptide backbone and the limited number (20) of natural amino acids. However these limitations can be overcome by use of chemical modification. For example, the libraries can be modified to introduce topological constraints such as cyclization linkers, or to introduce new chemical entities such as small molecule ligands, fluorophores and photo-switchable compounds. This article reviews the chemistry involved, the properties of the peptide ligands, and the new opportunities offered by chemical modification of DNA-encoded peptide libraries.

  19. Architecture for VLSI design of Reed-Solomon encoders

    NASA Technical Reports Server (NTRS)

    Liu, K. Y.

    1981-01-01

    The logic structure of a universal VLSI chip called the symbol-slice Reed-Solomon (RS) encoder chip is discussed. An RS encoder can be constructed by cascading and properly interconnecting a group of such VLSI chips. As a design example, it is shown that a (255,223) RD encoder requiring around 40 discrete CMOS ICs may be replaced by an RS encoder consisting of four identical interconnected VLSI RS encoder chips. Besides the size advantage, the VLSI RS encoder also has the potential advantages of requiring less power and having a higher reliability.

  20. The Large Binocular Telescope azimuth and elevation encoder system

    NASA Astrophysics Data System (ADS)

    Ashby, David S.; Sargent, Tom; Cox, Dan; Rosato, Jerry; Brynnel, Joar G.

    2008-08-01

    A typical high-resolution encoder interpolator relies on careful mechanical alignment of the encoder read-heads and tight electrical tolerances of the signal processing electronics to ensure linearity. As the interpolation factor increases, maintaining these tight mechanical and electrical tolerances becomes impractical. The Large Binocular Telescope (LBT) is designed to utilize strip-type encoders on the main axes. Because of the very large scale of the telescope, the accumulative length of the azimuth and elevation encoder strips exceeds 80 meters, making optical tape prohibitively expensive. Consequently, the designers of the LBT incorporated the far less expensive Farrand Controls Inductosyn® linear strip encoder to encode the positions of the main axes and the instrument rotators. Since the cycle pitch of these encoders is very large compared to that of optical strip encoders, the interpolation factor must also be large in order to achieve the 0.005 arcsecond encoder resolution as specified. The authors present a description of the innovative DSP-based hardware / software solution that adaptively characterizes and removes common systematic cycle-to-cycle encoder interpolation errors. These errors can be caused by mechanical misalignment, encoder manufacturing flaws, variations in electrical gain, signal offset or cross-coupling of the encoder signals. Simulation data are presented to illustrate the performance of the interpolation algorithm, and telemetry data are presented to demonstrate the actual performance of the LBT main-axis encoder system.

  1. Plasmid-encoded trimethoprim resistance in staphylococci.

    PubMed Central

    Archer, G L; Coughter, J P; Johnston, J L

    1986-01-01

    High-level (greater than 1,000 micrograms/ml) resistance to the antimicrobial agent trimethoprim was found in 17 of 101 (17%) coagulase-negative staphylococci and 5 of 51 (10%) Staphylococcus aureus from a number of different hospitals in the United States. Resistance was plasmid encoded and could be transferred by conjugation in 4 of the 17 (24%) Tpr coagulase-negative staphylococci and 3 of the 5 (60%) Tpr S. aureus. A 1.2-kilobase segment of plasmid DNA from one of the plasmids (pG01) was cloned on a high-copy-number vector in Escherichia coli and expressed high-level Tpr (MIC, 1,025 micrograms/ml) in the gram-negative host. In situ filter hybridization demonstrated homology between the cloned Tpr gene probe and plasmid DNA from each conjugative Tpr plasmid, a single nonconjugative plasmid from a United States Staphylococcus epidermidis isolate, a nonconjugative plasmid from an Australian methicillin-resistant S. aureus isolate, and chromosomal DNA from three Tpr S. epidermidis isolates that did not contain any plasmid DNA that was homologous with the probe. No homology was seen between the probe and staphylococcal plasmids not mediating Tpr, plasmid DNA from 12 Tpr S. epidermidis isolates not transferring Tpr by conjugation, or plasmid-encoded Tpr genes derived from gram-negative bacteria. Plasmid-encoded Tpr appears to be a relatively new gene in staphylococci and, because it can be transferred by conjugation, could become more prevalent in nonsocomial isolates. Images PMID:3729338

  2. Evaluating standard terminologies for encoding allergy information

    PubMed Central

    Goss, Foster R; Zhou, Li; Plasek, Joseph M; Broverman, Carol; Robinson, George; Middleton, Blackford; Rocha, Roberto A

    2013-01-01

    Objective Allergy documentation and exchange are vital to ensuring patient safety. This study aims to analyze and compare various existing standard terminologies for representing allergy information. Methods Five terminologies were identified, including the Systemized Nomenclature of Medical Clinical Terms (SNOMED CT), National Drug File–Reference Terminology (NDF-RT), Medication Dictionary for Regulatory Activities (MedDRA), Unique Ingredient Identifier (UNII), and RxNorm. A qualitative analysis was conducted to compare desirable characteristics of each terminology, including content coverage, concept orientation, formal definitions, multiple granularities, vocabulary structure, subset capability, and maintainability. A quantitative analysis was also performed to compare the content coverage of each terminology for (1) common food, drug, and environmental allergens and (2) descriptive concepts for common drug allergies, adverse reactions (AR), and no known allergies. Results Our qualitative results show that SNOMED CT fulfilled the greatest number of desirable characteristics, followed by NDF-RT, RxNorm, UNII, and MedDRA. Our quantitative results demonstrate that RxNorm had the highest concept coverage for representing drug allergens, followed by UNII, SNOMED CT, NDF-RT, and MedDRA. For food and environmental allergens, UNII demonstrated the highest concept coverage, followed by SNOMED CT. For representing descriptive allergy concepts and adverse reactions, SNOMED CT and NDF-RT showed the highest coverage. Only SNOMED CT was capable of representing unique concepts for encoding no known allergies. Conclusions The proper terminology for encoding a patient's allergy is complex, as multiple elements need to be captured to form a fully structured clinical finding. Our results suggest that while gaps still exist, a combination of SNOMED CT and RxNorm can satisfy most criteria for encoding common allergies and provide sufficient content coverage. PMID:23396542

  3. Using the ENCODE Resource for Functional Annotation of Genetic Variants.

    PubMed

    Pazin, Michael J

    2015-03-11

    This article illustrates the use of the Encyclopedia of DNA Elements (ENCODE) resource to generate or refine hypotheses from genomic data on disease and other phenotypic traits. First, the goals and history of ENCODE and related epigenomics projects are reviewed. Second, the rationale for ENCODE and the major data types used by ENCODE are briefly described, as are some standard heuristics for their interpretation. Third, the use of the ENCODE resource is examined. Standard use cases for ENCODE, accessing the ENCODE resource, and accessing data from related projects are discussed. Although the focus of this article is the use of ENCODE data, some of the same approaches can be used with data from other projects.

  4. The ENCODE (ENCyclopedia Of DNA Elements) Project.

    PubMed

    2004-10-22

    The ENCyclopedia Of DNA Elements (ENCODE) Project aims to identify all functional elements in the human genome sequence. The pilot phase of the Project is focused on a specified 30 megabases (approximately 1%) of the human genome sequence and is organized as an international consortium of computational and laboratory-based scientists working to develop and apply high-throughput approaches for detecting all sequence elements that confer biological function. The results of this pilot phase will guide future efforts to analyze the entire human genome.

  5. Rapidly-Indexing Incremental-Angle Encoder

    NASA Technical Reports Server (NTRS)

    Christon, Philip R.; Meyer, Wallace W.

    1989-01-01

    Optoelectronic system measures relative angular position of shaft or other device to be turned, also measures absolute angular position after device turned through small angle. Relative angular position measured with fine resolution by optoelectronically counting finely- and uniformly-spaced light and dark areas on encoder disk as disk turns past position-sensing device. Also includes track containing coarsely- and nonuniformly-spaced light and dark areas, angular widths varying in proportion to absolute angular position. This second track provides gating and indexing signal.

  6. Spatially encoded multiple-quantum excitation.

    PubMed

    Ridge, Clark D; Borvayeh, Leila; Walls, Jamie D

    2013-05-28

    In this work, we present a simple method to spatially encode the transition frequencies of nuclear spin transitions and to read out these frequencies within a single scan. The experiment works by combining pulsed field gradients with an excitation sequence that selectively excites spin transitions within certain sample regions. After the initial excitation, imaging the resulting ẑ-magnetization is used to determine the locations where the excitations occurred, from which the corresponding transition frequencies are determined. Simple experimental demonstrations of this technique on one- and two-spin systems are presented.

  7. Space Qualified High Speed Reed Solomon Encoder

    NASA Technical Reports Server (NTRS)

    Gambles, Jody W.; Winkert, Tom

    1993-01-01

    This paper reports a Class S CCSDS recommendation Reed Solomon encoder circuit baselined for several NASA programs. The chip is fabricated using United Technologies Microelectronics Center's UTE-R radiation-hardened gate array family, contains 64,000 p-n transistor pairs, and operates at a sustained output data rate of 200 MBits/s. The chip features a pin selectable message interleave depth of from 1 to 8 and supports output block lengths of 33 to 255 bytes. The UTE-R process is reported to produce parts that are radiation hardened to 16 Rads (Si) total dose and 1.0(exp -10) errors/bit-day.

  8. Subband image encoder using discrete wavelet transform

    NASA Astrophysics Data System (ADS)

    Seong, Hae Kyung; Rhee, Kang Hyeon

    2004-03-01

    Introduction of digital communication network such as Integrated Services Digital Networks (ISDN) and digital storage media have rapidly developed. Due to a large amount of image data, compression is the key techniques in still image and video using digital signal processing for transmitting and storing. Digital image compression provides solutions for various image applications that represent digital image requiring a large amount of data. In this paper, the proposed DWT (Discrete Wavelet Transform) filter bank is consisted of simple architecture, but it is efficiently designed that a user obtains a wanted compression rate as only input parameter. If it is implemented by FPGA chip, the designed encoder operates in 12 MHz.

  9. Mouse redox histology using genetically encoded probes.

    PubMed

    Fujikawa, Yuuta; Roma, Leticia P; Sobotta, Mirko C; Rose, Adam J; Diaz, Mauricio Berriel; Locatelli, Giuseppe; Breckwoldt, Michael O; Misgeld, Thomas; Kerschensteiner, Martin; Herzig, Stephan; Müller-Decker, Karin; Dick, Tobias P

    2016-03-15

    Mapping the in vivo distribution of endogenous oxidants in animal tissues is of substantial biomedical interest. Numerous health-related factors, including diet, physical activity, infection, aging, toxins, or pharmacological intervention, may cause redox changes. Tools are needed to pinpoint redox state changes to particular organs, tissues, cell types, and subcellular organelles. We describe a procedure that preserves the in vivo redox state of genetically encoded redox biosensors within histological tissue sections, thus providing "redox maps" for any tissue and comparison of interest. We demonstrate the utility of the technique by visualizing endogenous redox differences and changes in the context of tumor growth, inflammation, embryonic development, and nutrient starvation.

  10. Gene encoding herbicide safener binding protein

    SciTech Connect

    Walton, Jonathan D.; Scott-Craig, John S.

    1999-01-01

    The cDNA encoding safener binding protein (SafBP), also referred to as SBP1, is set forth in FIG. 5 and SEQ ID No. 1. The deduced amino acid sequence is provided in FIG. 5 and SEQ ID No. 2. Methods of making and using SBP1 and SafBP to alter a plant's sensitivity to certain herbicides or a plant's responsiveness to certain safeners are also provided, as well as expression vectors, transgenic plants or other organisms transfected with said vectors and seeds from said plants.

  11. Polynucleotides encoding TRF1 binding proteins

    DOEpatents

    Campisi, Judith; Kim, Sahn-Ho

    2002-01-01

    The present invention provides a novel telomere associated protein (Trf1-interacting nuclear protein 2 "Tin2") that hinders the binding of Trf1 to its specific telomere repeat sequence and mediates the formation of a Tin2-Trf1-telomeric DNA complex that limits telomerase access to the telomere. Also included are the corresponding nucleic acids that encode the Tin2 of the present invention, as well as mutants of Tin2. Methods of making, purifying and using Tin2 of the present invention are described. In addition, drug screening assays to identify drugs that mimic and/or complement the effect of Tin2 are presented.

  12. Auditory location as an encoding dimension.

    PubMed

    Weeks, R A

    1975-05-01

    In two experiments, subjects were given five successive short-term memory tests. In Experiment 1, recall was not significantly facilitated when memory material in the final test was delivered to the ear opposite to the one that received the memory material in the four preceding tests. In Experiment 2, events were presented from two differentially located speakers rather than through headphones. A shift across speakers on the final test did produce proactive interference release. These findings suggest spatial location as a potential encoding dimension of verbal material.

  13. Digitally encoded all-optical sensor multiplexing

    NASA Astrophysics Data System (ADS)

    Pervez, Anjum

    1992-01-01

    A digital, all-optical temperature sensor design concept based on optical sampling and digital encoding is presented. The proposed sensor generates 2M binary digital codewords of length M bits. The codewords are generated serially and, therefore, only a single output fiber line is required. A multiplexing scheme, which minimizes the power requirement per sensor array and facilitates a cost-effective digit regeneration for remote monitoring over long distance, is presented. The sensor arrays are used as building blocks to configure large scale sensor networks based on LAN topologies.

  14. Wavelet encoding and variable resolution progressive transmission

    NASA Technical Reports Server (NTRS)

    Blanford, Ronald P.

    1993-01-01

    Progressive transmission is a method of transmitting and displaying imagery in stages of successively improving quality. The subsampled lowpass image representations generated by a wavelet transformation suit this purpose well, but for best results the order of presentation is critical. Candidate data for transmission are best selected using dynamic prioritization criteria generated from image contents and viewer guidance. We show that wavelets are not only suitable but superior when used to encode data for progressive transmission at non-uniform resolutions. This application does not preclude additional compression using quantization of highpass coefficients, which to the contrary results in superior image approximations at low data rates.

  15. Image compression based on GPU encoding

    NASA Astrophysics Data System (ADS)

    Bai, Zhaofeng; Qiu, Yuehong

    2015-07-01

    With the rapid development of digital technology, the data increased greatly in both static image and dynamic video image. It is noticeable how to decrease the redundant data in order to save or transmit information more efficiently. So the research on image compression becomes more and more important. Using GPU to achieve higher compression ratio has superiority in interactive remote visualization. Contrast to CPU, GPU may be a good way to accelerate the image compression. Currently, GPU of NIVIDIA has evolved into the eighth generation, which increasingly dominates the high-powered general purpose computer field. This paper explains the way of GPU encoding image. Some experiment results are also presented.

  16. Novel encoding methods for DNA-templated chemical libraries.

    PubMed

    Li, Gang; Zheng, Wenlu; Liu, Ying; Li, Xiaoyu

    2015-06-01

    Among various types of DNA-encoded chemical libraries, DNA-templated library takes advantage of the sequence-specificity of DNA hybridization, enabling not only highly effective DNA-templated chemical reactions, but also high fidelity in library encoding. This brief review summarizes recent advances that have been made on the encoding strategies for DNA-templated libraries, and it also highlights their respective advantages and limitations for the preparation of DNA-encoded libraries.

  17. Visual Encoding Mechanisms and Their Relationship to Text Presentation Preference

    ERIC Educational Resources Information Center

    Pammer, Kristen; Lavis, Ruth; Cornelissen, Piers

    2004-01-01

    This study was designed to investigate the importance of spatial encoding in reading, with particular emphasis on visuo-spatial encoding mechanisms. Thirty one school children participated in the first study in which they were measured on their ability to solve a centrally presented spatial encoding task, as well as their sensitivity to the…

  18. Socialization Processes in Encoding and Decoding: Learning Effective Nonverbal Behavior.

    ERIC Educational Resources Information Center

    Feldman, Robert S.; Coats, Erik

    This study examined the relationship of nonverbal encoding and decoding skills to the level of exposure to television. Subjects were children in second through sixth grade. Three nonverbal skills (decoding, spontaneous encoding, and posed encoding) were assessed for each of five emotions: anger, disgust, fear or surprise, happiness, and sadness.…

  19. Optical Pseudocolor Encoding Of Gray-Scale Image

    NASA Technical Reports Server (NTRS)

    Chao, Tien-Hsin; Liu, Hua-Kuang

    1990-01-01

    Optical encoding much faster than digital electronic encoding. In optical pseudocolor-encoding apparatus brightness modulation in image from television camera transformed into polarization modulation in LCTV, and then into pseudocolor modulation in image on projection screen. Advantageous for such purposes as thermography, inspection of circuit boards, mammography, and mapping.

  20. Self-encoding resin beads of combinatorial library screening

    NASA Astrophysics Data System (ADS)

    Lei, Du; Zhao, Yuandi; Cheng, Tongsheng; Zeng, Shaoqun; Luo, Qingming

    2003-07-01

    The latest self-encoding resin bead is a novel technology for solid phase synthesis combinatorial library screening. A new encode-positional deconvolution strategy which was based on that technology been illustrated compared with positional scanning and iterative strategies. The self-encoding resin beads technology provides an efficient method for improving the high-throughput screening of combinatorial library.

  1. The First Gene-encoded Amphibian Neurotoxin*

    PubMed Central

    You, Dewen; Hong, Jing; Rong, Mingqiang; Yu, Haining; Liang, Songping; Ma, Yufang; Yang, Hailong; Wu, Jing; Lin, Donghai; Lai, Ren

    2009-01-01

    Many gene-encoded neurotoxins with various functions have been discovered in fish, reptiles, and mammals. A novel 60-residue neurotoxin peptide (anntoxin) that inhibited tetrodotoxin-sensitive (TTX-S) voltage-gated sodium channel (VGSC) was purified and characterized from the skin secretions of the tree frog Hyla annectans (Jerdon). This is the first gene-encoded neurotoxin found in amphibians. The IC50 of anntoxin for the TTX-S channel was about 3.4 μm. Anntoxin shares sequence homology with Kunitz-type toxins but contains only two of three highly conserved cysteine bridges, which are typically found in these small, basic neurotoxin modules, i.e. snake dendrotoxins. Anntoxin showed an inhibitory ability against trypsin with an inhibitory constant (Ki) of 0.025 μm. Anntoxin was distributed in skin, brain, stomach, and liver with a concentration of 25, 7, 3, and 2 μg/g wet tissue, respectively. H. annectans lives on trees or other plants for its entire life cycle, and its skin contains the largest amount of anntoxin, which possibly helps defend against various aggressors or predators. A low dose of anntoxin was found to induce lethal toxicity for several potential predators, including the insect, snake, bird, and mouse. The tissue distribution and functional properties of the current toxin may provide insights into the ecological adaptation of tree-living amphibians. PMID:19535333

  2. Directed forgetting benefits motor sequence encoding.

    PubMed

    Tempel, Tobias; Frings, Christian

    2016-04-01

    Two experiments investigated directed forgetting of newly learned motor sequences. Concurrently with the list method of directed forgetting, participants successively learned two lists of motor sequences. Each sequence consisted of four consecutive finger movements. After a short distractor task, a recall test was given. Both experiments compared a forget group that was instructed to forget list-1 items with a remember group not receiving a forget instruction. We found that the instruction to forget list 1 enhanced recall of subsequently learned motor sequences. This benefit of directed forgetting occurred independently of costs for list 1. A mediation analysis showed that the encoding accuracy of list 2 was a mediator of the recall benefit, that is, the more accurate execution of motor sequences of list 2 after receiving a forget instruction for list 1 accounted for better recall of list 2. Thus, the adaptation of the list method to motor action provided more direct evidence on the effect of directed forgetting on subsequent learning. The results corroborate the assumption of a reset of encoding as a consequence of directed forgetting.

  3. Encoded multisite two-photon microscopy

    PubMed Central

    Ducros, Mathieu; Houssen, Yannick Goulam; Bradley, Jonathan; de Sars, Vincent; Charpak, Serge

    2013-01-01

    The advent of scanning two-photon microscopy (2PM) has created a fertile new avenue for noninvasive investigation of brain activity in depth. One principal weakness of this method, however, lies with the limit of scanning speed, which makes optical interrogation of action potential-like activity in a neuronal network problematic. Encoded multisite two-photon microscopy (eMS2PM), a scanless method that allows simultaneous imaging of multiple targets in depth with high temporal resolution, addresses this drawback. eMS2PM uses a liquid crystal spatial light modulator to split a high-power femto-laser beam into multiple subbeams. To distinguish them, a digital micromirror device encodes each subbeam with a specific binary amplitude modulation sequence. Fluorescence signals from all independently targeted sites are then collected simultaneously onto a single photodetector and site-specifically decoded. We demonstrate that eMS2PM can be used to image spike-like voltage transients in cultured cells and fluorescence transients (calcium signals in neurons and red blood cells in capillaries from the cortex) in depth in vivo. These results establish eMS2PM as a unique method for simultaneous acquisition of neuronal network activity. PMID:23798397

  4. Encoded multisite two-photon microscopy.

    PubMed

    Ducros, Mathieu; Goulam Houssen, Yannick; Bradley, Jonathan; de Sars, Vincent; Charpak, Serge

    2013-08-06

    The advent of scanning two-photon microscopy (2PM) has created a fertile new avenue for noninvasive investigation of brain activity in depth. One principal weakness of this method, however, lies with the limit of scanning speed, which makes optical interrogation of action potential-like activity in a neuronal network problematic. Encoded multisite two-photon microscopy (eMS2PM), a scanless method that allows simultaneous imaging of multiple targets in depth with high temporal resolution, addresses this drawback. eMS2PM uses a liquid crystal spatial light modulator to split a high-power femto-laser beam into multiple subbeams. To distinguish them, a digital micromirror device encodes each subbeam with a specific binary amplitude modulation sequence. Fluorescence signals from all independently targeted sites are then collected simultaneously onto a single photodetector and site-specifically decoded. We demonstrate that eMS2PM can be used to image spike-like voltage transients in cultured cells and fluorescence transients (calcium signals in neurons and red blood cells in capillaries from the cortex) in depth in vivo. These results establish eMS2PM as a unique method for simultaneous acquisition of neuronal network activity.

  5. Negative base encoding in optical linear algebra processors

    NASA Technical Reports Server (NTRS)

    Perlee, C.; Casasent, D.

    1986-01-01

    In the digital multiplication by analog convolution algorithm, the bits of two encoded numbers are convolved to form the product of the two numbers in mixed binary representation; this output can be easily converted to binary. Attention is presently given to negative base encoding, treating base -2 initially, and then showing that the negative base system can be readily extended to any radix. In general, negative base encoding in optical linear algebra processors represents a more efficient technique than either sign magnitude or 2's complement encoding, when the additions of digitally encoded products are performed in parallel.

  6. Fast Huffman encoding algorithms in MPEG-4 advanced audio coding

    NASA Astrophysics Data System (ADS)

    Brzuchalski, Grzegorz

    2014-11-01

    This paper addresses the optimisation problem of Huffman encoding in MPEG-4 Advanced Audio Coding stan- dard. At first, the Huffman encoding problem and the need of encoding two side info parameters scale factor and Huffman codebook are presented. Next, Two Loop Search, Maximum Noise Mask Ratio and Trellis Based algorithms of bit allocation are briefly described. Further, Huffman encoding optimisation are shown. New methods try to check and change scale factor bands as little as possible to estimate bitrate cost or its change. Finally, the complexity of old and new methods is calculated, compared and measured time of encoding is given.

  7. A Multi-Encoding Approach for LTL Symbolic Satisfiability Checking

    NASA Technical Reports Server (NTRS)

    Rozier, Kristin Y.; Vardi, Moshe Y.

    2011-01-01

    Formal behavioral specifications written early in the system-design process and communicated across all design phases have been shown to increase the efficiency, consistency, and quality of the system under development. To prevent introducing design or verification errors, it is crucial to test specifications for satisfiability. Our focus here is on specifications expressed in linear temporal logic (LTL). We introduce a novel encoding of symbolic transition-based Buchi automata and a novel, "sloppy," transition encoding, both of which result in improved scalability. We also define novel BDD variable orders based on tree decomposition of formula parse trees. We describe and extensively test a new multi-encoding approach utilizing these novel encoding techniques to create 30 encoding variations. We show that our novel encodings translate to significant, sometimes exponential, improvement over the current standard encoding for symbolic LTL satisfiability checking.

  8. Optically coupled digital altitude encoder for general aviation altimeters

    NASA Technical Reports Server (NTRS)

    Bryant, F. R.

    1975-01-01

    An optically coupled pressure altitude encoder which can be incorporated into commercially available inexpensive general aviation altimeters was successfully developed. The encoding of pressure altitude is accomplished in 100-ft (30.48-m) increments from -1000 to 20,000ft (-304.8 to 6096 m). The prototype encoders were retrofitted into two different internal altimeter configurations. A prototype encoder was checked for accuracy of transition points and environmental effects. Each altimeter configuration, with the encoder incorporated, was laboratory tested for performance and was subsequently flight-tested over the specified altitude range. With few exceptions, the assembled altimeter-encoder met aeronautical standards for altimeters and encoders. Design changes are suggested to improve performance to meet required standards consistently.

  9. DNA-Encoded Solid-Phase Synthesis: Encoding Language Design and Complex Oligomer Library Synthesis

    PubMed Central

    2015-01-01

    The promise of exploiting combinatorial synthesis for small molecule discovery remains unfulfilled due primarily to the “structure elucidation problem”: the back-end mass spectrometric analysis that significantly restricts one-bead-one-compound (OBOC) library complexity. The very molecular features that confer binding potency and specificity, such as stereochemistry, regiochemistry, and scaffold rigidity, are conspicuously absent from most libraries because isomerism introduces mass redundancy and diverse scaffolds yield uninterpretable MS fragmentation. Here we present DNA-encoded solid-phase synthesis (DESPS), comprising parallel compound synthesis in organic solvent and aqueous enzymatic ligation of unprotected encoding dsDNA oligonucleotides. Computational encoding language design yielded 148 thermodynamically optimized sequences with Hamming string distance ≥ 3 and total read length <100 bases for facile sequencing. Ligation is efficient (70% yield), specific, and directional over 6 encoding positions. A series of isomers served as a testbed for DESPS’s utility in split-and-pool diversification. Single-bead quantitative PCR detected 9 × 104 molecules/bead and sequencing allowed for elucidation of each compound’s synthetic history. We applied DESPS to the combinatorial synthesis of a 75 645-member OBOC library containing scaffold, stereochemical and regiochemical diversity using mixed-scale resin (160-μm quality control beads and 10-μm screening beads). Tandem DNA sequencing/MALDI-TOF MS analysis of 19 quality control beads showed excellent agreement (<1 ppt) between DNA sequence-predicted mass and the observed mass. DESPS synergistically unites the advantages of solid-phase synthesis and DNA encoding, enabling single-bead structural elucidation of complex compounds and synthesis using reactions normally considered incompatible with unprotected DNA. The widespread availability of inexpensive oligonucleotide synthesis, enzymes, DNA sequencing, and

  10. Ribosomally encoded cyclic peptide toxins from mushrooms.

    PubMed

    Walton, Jonathan D; Luo, Hong; Hallen-Adams, Heather

    2012-01-01

    The cyclic peptide toxins of poisonous Amanita mushrooms are chemically unique among known natural products. Furthermore, they differ from other fungal cyclic peptides in being synthesized on ribosomes instead of by nonribosomal peptide synthetases. Because of their novel structures and biogenic origins, elucidation of the biosynthetic pathway of the Amanita cyclic peptides presents both challenges and opportunities. In particular, a full understanding of the pathway should lead to the ability to direct synthesis of a large number of novel cyclic peptides based on the Amanita toxin scaffold by genetic engineering of the encoding genes. Here, we highlight some of the principal methods for working with the Amanita cyclic peptides and the known steps in their biosynthesis.

  11. Ultrathin nonlinear metasurface for optical image encoding.

    PubMed

    Walter, Felicitas; Li, Guixin; Meier, Cedrik; Zhang, Shuang; Zentgraf, Thomas

    2017-04-14

    Security of optical information is of great importance in modern society. Many cryptography techniques based on classical and quantum optics have been widely explored in the linear optical regime. Nonlinear optical encryption, in which encoding and decoding involve nonlinear frequency conversions, represents a new strategy for securing optical information. Here, we demonstrate that an ultrathin nonlinear photonic metasurface, consisting of meta-atoms with three-fold rotational symmetry, can be used to hide optical images under illumination with a fundamental wave. However, the hidden image can be read out from second harmonic generation (SHG) waves. This is achieved by controlling the destructive and constructive interferences of SHG waves from two neighboring meta-atoms. In addition, we apply this concept to obtain grey-scale SHG imaging. Nonlinear metasurfaces based on space variant optical interference open new avenues for multi-level image encryption, anti-counterfeiting and background free image reconstruction.

  12. Ultrasonically Encoded Photoacoustic Flowgraphy in Biological Tissue

    NASA Astrophysics Data System (ADS)

    Wang, Lidai; Xia, Jun; Yao, Junjie; Maslov, Konstantin I.; Wang, Lihong V.

    2013-11-01

    Blood flow speed is an important functional parameter. Doppler ultrasound flowmetry lacks sufficient sensitivity to slow blood flow (several to tens of millimeters per second) in deep tissue. To address this challenge, we developed ultrasonically encoded photoacoustic flowgraphy combining ultrasonic thermal tagging with photoacoustic imaging. Focused ultrasound generates a confined heat source in acoustically absorptive fluid. Thermal waves propagate with the flow and are directly visualized in pseudo color using photoacoustic computed tomography. The Doppler shift is employed to calculate the flow speed. This method requires only acoustic and optical absorption, and thus is applicable to continuous fluid. A blood flow speed as low as 0.24mm·s-1 was successfully measured. Deep blood flow imaging was experimentally demonstrated under 5-mm-thick chicken breast tissue.

  13. Schistosome satellite DNA encodes active hammerhead ribozymes.

    PubMed

    Ferbeyre, G; Smith, J M; Cedergren, R

    1998-07-01

    Using a computer program designed to search for RNA structural motifs in sequence databases, we have found a hammerhead ribozyme domain encoded in the Smalpha repetitive DNA of Schistosoma mansoni. Transcripts of these repeats are expressed as long multimeric precursor RNAs that cleave in vitro and in vivo into unit-length fragments. This RNA domain is able to engage in both cis and trans cleavage typical of the hammerhead ribozyme. Further computer analysis of S. mansoni DNA identified a potential trans cleavage site in the gene coding for a synaptobrevin-like protein, and RNA transcribed from this gene was efficiently cleaved by the Smalpha ribozyme in vitro. Similar families of repeats containing the hammerhead domain were found in the closely related Schistosoma haematobium and Schistosomatium douthitti species but were not present in Schistosoma japonicum or Heterobilharzia americana, suggesting that the hammerhead domain was not acquired from a common schistosome ancestor.

  14. Genetically encoded sensors for calcium and zinc

    NASA Astrophysics Data System (ADS)

    Palmer, Amy E.; Dittmer, Philip; McCombs, Janet E.

    2008-02-01

    Our lab focuses on developing fluorescent biosensors based on fluorescence resonance energy transfer (FRET) so that we can monitor signaling ions in living cells. These sensors are comprised of two fluorescent proteins and a sensing domain that undergoes a conformational change upon binding the target ligand. These sensors can be genetically encoded and hence incorporated into cells by transgenic technologies. Here we discuss the latest developments in our efforts to reengineer calcium sensors as well as develop new sensors for zinc. In these efforts we employ a combination of naturally occurring calcium and zinc binding domains, combined with protein engineering. We are also developing new methodologies to screen and sort sensor libraries using optically-integrated microfluidic devices. Thus far, we have targeted sensors to the ER, mitochondria, Golgi, nucleus, and plasma membrane in order to examine the spatial heterogeneity and localization of signaling processes.

  15. Photoelectrical encoder employing an optical grating

    SciTech Connect

    Kabaya, Y.

    1985-02-12

    A photoelectrical encoder is disclosed wherein a physical quantity is detected from brightness obtained by moving a first and a second scale. Each scale is provided thereon with an optical grating relative to each other. The grating in one of the scales is constructed such that a first signal lead-out material layer made of a light shielding conductive material, a PN semiconductor layer for converting light into electricity, and a second signal lead-out material layer made of a light transmitting conductive material are laminated on a light transmitting base member to form a narrow belt-shaped light receiving portion and a plurality of narrow belt-shaped light receiving portions arranged at regular pitches. Against the light from the light transmitting base member, the light receiving portions function as light shielding slits, and intervals between the light receiving portions are formed into light transmitting slits.

  16. Brain Circuits Encoding Reward from Pain Relief

    PubMed Central

    Navratilova, Edita; Atcherley, Christopher; Porreca, Frank

    2015-01-01

    Relief from pain in humans is rewarding and pleasurable. Primary rewards, or reward predictive cues, are encoded in brain reward/motivational circuits. While considerable advances have been made in our understanding of reward circuits underlying positive reinforcement, less is known about the circuits underlying the hedonic and reinforcing actions of pain relief. We review findings from electrophysiological, neuroimaging and behavioral studies supporting the concept that the rewarding effect of pain relief requires opioid signaling in the anterior cingulate cortex, activation of midbrain dopamine neurons and release of dopamine in the nucleus accumbens. Understanding of circuits that govern the reward of pain relief may allow the discovery of more effective and satisfying therapies for patients with acute and chronic pain. PMID:26603560

  17. The gene encoding proopiomelanocortin in the dog.

    PubMed

    Mol, J A; van Mansfeld, A D; Kwant, M M; van Wolferen, M; Rothuizen, J

    1991-01-01

    The regulation of the synthesis of ACTH in the dog is of interest for studies of the physiology of the pituitary-adrenocortical axis as well as for studies of the pathogenesis of pituitary-dependent hyperadrenocorticism. Despite this broad interest the nucleotide sequence encoding ACTH and its precursor proopiomelanocortin (POMC) is not known, nor is it clear whether there are differences in POMC mRNA from the anterior lobe or the intermediate lobe of the normal pituitary or from pituitary tumours causing ACTH excess. Following the preparation of a cDNA library from the canine intermediate lobe of the pituitary gland, the part of the mRNA that is translated into the proopiomelanocortin prohormone was amplified using a polymerase chain reaction. Sequence analysis revealed the highest homology with the porcine mRNA sequence. Translation in a single reading frame revealed highly homologous areas in the amino-terminal, carboxy-terminal, and ACTH part of the prohormone, whereas a high diversity was noticed at the sequence preceding ACTH and the beginning of beta-lipotropin. Northern blot analysis disclosed the presence of a POMC mRNA of approximately 1300 nucleotides. There were no size differences between the anterior lobe, intermediate lobe, and pituitary tumour derived POMC mRNA. The highest expression levels of POMC mRNA as related to the expression of the gene encoding glyceraldehyde-3-phosphate dehydrogenase were found in the intermediate lobe of the canine pituitary gland. It is concluded that excessive production of ACTH by pituitary tumours is not caused by relatively high expression levels or alterations in the size of mRNA.

  18. Miniature Grating for Spectrally-Encoded Endoscopy

    PubMed Central

    Kang, Dongkyun; Martinez, Ramses V.; Whitesides, George M.

    2013-01-01

    Spectrally-encoded endoscopy (SEE) is an ultraminiature endoscopy technology that acquires high-definition images of internal organs through a sub-mm endoscopic probe. In SEE, a grating at the tip of the imaging optics diffracts the broadband light into multiple beams, where each beam with a distinctive wavelength is illuminated on a unique transverse location of the tissue. By encoding one transverse coordinate with the wavelength, SEE can image a line of the tissue at a time without using any beam scanning devices. This feature of the SEE technology allows the SEE probe to be miniaturized to sub-mm dimensions. While previous studies have shown that SEE has the potential to be utilized for various clinical imaging applications, the translation of SEE for medicine has been hampered by challenges in fabricating the miniature grating inherent to SEE probes. This paper describes a new fabrication method for SEE probes. The new method uses a soft lithographic approach to pattern a high-aspect-ratio grating at the tip of the miniature imaging optics. Using this technique, we have constructed a 500-μm-diameter SEE probe. The miniature grating at the tip of the probe had a measured diffraction efficiency of 75%. The new SEE probe was used to image a human finger and formalin fixed mouse embryos, demonstrating the capability of this device to visualize key anatomic features of tissues with high image contrast. In addition to providing high quality imaging SEE optics, the soft lithography method allows cost-effective and reliable fabrication of these miniature endoscopes, which will facilitate the clinical translation of SEE technology. PMID:23503940

  19. Encoding continuous spatial phenomena in GML

    NASA Astrophysics Data System (ADS)

    de Vries, M. E.; Ledoux, H.

    2009-04-01

    In the discussion about how to model and encode geographic information two meta-models of space exist: the 'object' view and the 'field' view. This difference in conceptual view is also reflected in different data models and encoding formats. Among GIS practitioners, ‘fields' (or ‘coverages') are being used almost exclusively in 2D, while in the geoscience community 3D and higher-dimensional fields are widely used. (Note that the dimensions in oceanographic/atmospheric coverages are not necessarily spatial dimensions, as any parameters (e.g. temperature of the air, or density of water) can be considered a dimension.) While standardisation work in ISO and OGC has led to agreement on how to best encode discrete spatial objects, for the modelling and encoding of continuous ‘fields' there are still a number of open issues. In the presentation we will shortly discuss the current standards related to fields, and look at their shortcomings and potential. In ISO 19123 for example a distinction is made between discrete and continuous coverages, but the difference is not very clear and hard to capture for implementers. As far as encoding is concerned: GML 3.x (ISO 19136) has a discrete coverage data type, but no continuous coverage type. We will then present an alternative solution to model fields, and show how it can be implemented using some parts of GML, but not the ISO/GML coverage type. This alternative data model for fields permits us to represent fields in 2D and 3D, although conceptually it can be easily extended to higher dimensions. Unlike current standards where there is a distinction between discrete and continuous fields/coverages, we argue that a field should always have one - and only one! - value for a given attribute at every location in the spatial domain (be this domain the surface of the Earth, a 3D volume, or even a 4D spatio-temporal hypercube). The principal idea behind the proposed model is that two things are needed to have a coverage: 1. a set

  20. Modular verification of chemical reaction network encodings via serializability analysis.

    PubMed

    Lakin, Matthew R; Stefanovic, Darko; Phillips, Andrew

    2016-06-13

    Chemical reaction networks are a powerful means of specifying the intended behaviour of synthetic biochemical systems. A high-level formal specification, expressed as a chemical reaction network, may be compiled into a lower-level encoding, which can be directly implemented in wet chemistry and may itself be expressed as a chemical reaction network. Here we present conditions under which a lower-level encoding correctly emulates the sequential dynamics of a high-level chemical reaction network. We require that encodings are transactional, such that their execution is divided by a "commit reaction" that irreversibly separates the reactant-consuming phase of the encoding from the product-generating phase. We also impose restrictions on the sharing of species between reaction encodings, based on a notion of "extra tolerance", which defines species that may be shared between encodings without enabling unwanted reactions. Our notion of correctness is serializability of interleaved reaction encodings, and if all reaction encodings satisfy our correctness properties then we can infer that the global dynamics of the system are correct. This allows us to infer correctness of any system constructed using verified encodings. As an example, we show how this approach may be used to verify two- and four-domain DNA strand displacement encodings of chemical reaction networks, and we generalize our result to the limit where the populations of helper species are unlimited.

  1. Categorical encoding of color in the brain

    PubMed Central

    Bird, Chris M.; Berens, Samuel C.; Horner, Aidan J.; Franklin, Anna

    2014-01-01

    The areas of the brain that encode color categorically have not yet been reliably identified. Here, we used functional MRI adaptation to identify neuronal populations that represent color categories irrespective of metric differences in color. Two colors were successively presented within a block of trials. The two colors were either from the same or different categories (e.g., “blue 1 and blue 2” or “blue 1 and green 1”), and the size of the hue difference was varied. Participants performed a target detection task unrelated to the difference in color. In the middle frontal gyrus of both hemispheres and to a lesser extent, the cerebellum, blood-oxygen level-dependent response was greater for colors from different categories relative to colors from the same category. Importantly, activation in these regions was not modulated by the size of the hue difference, suggesting that neurons in these regions represent color categorically, regardless of metric color difference. Representational similarity analyses, which investigated the similarity of the pattern of activity across local groups of voxels, identified other regions of the brain (including the visual cortex), which responded to metric but not categorical color differences. Therefore, categorical and metric hue differences appear to be coded in qualitatively different ways and in different brain regions. These findings have implications for the long-standing debate on the origin and nature of color categories, and also further our understanding of how color is processed by the brain. PMID:24591602

  2. Peafowl antipredator calls encode information about signalers.

    PubMed

    Yorzinski, Jessica L

    2014-02-01

    Animals emit vocalizations that convey information about external events. Many of these vocalizations, including those emitted in response to predators, also encode information about the individual that produced the call. The relationship between acoustic features of antipredator calls and information relating to signalers (including sex, identity, body size, and social rank) were examined in peafowl (Pavo cristatus). The "bu-girk" antipredator calls of male and female peafowl were recorded and 20 acoustic parameters were automatically extracted from each call. Both the bu and girk elements of the antipredator call were individually distinctive and calls were classified to the correct signaler with over 90% and 70% accuracy in females and males, respectively. Females produced calls with a higher fundamental frequency (F0) than males. In both females and males, body size was negatively correlated with F0. In addition, peahen rank was related to the duration, end mean frequency, and start harmonicity of the bu element. Peafowl antipredator calls contain detailed information about the signaler and can potentially be used by receivers to respond to dangerous situations.

  3. Categorical encoding of color in the brain.

    PubMed

    Bird, Chris M; Berens, Samuel C; Horner, Aidan J; Franklin, Anna

    2014-03-25

    The areas of the brain that encode color categorically have not yet been reliably identified. Here, we used functional MRI adaptation to identify neuronal populations that represent color categories irrespective of metric differences in color. Two colors were successively presented within a block of trials. The two colors were either from the same or different categories (e.g., "blue 1 and blue 2" or "blue 1 and green 1"), and the size of the hue difference was varied. Participants performed a target detection task unrelated to the difference in color. In the middle frontal gyrus of both hemispheres and to a lesser extent, the cerebellum, blood-oxygen level-dependent response was greater for colors from different categories relative to colors from the same category. Importantly, activation in these regions was not modulated by the size of the hue difference, suggesting that neurons in these regions represent color categorically, regardless of metric color difference. Representational similarity analyses, which investigated the similarity of the pattern of activity across local groups of voxels, identified other regions of the brain (including the visual cortex), which responded to metric but not categorical color differences. Therefore, categorical and metric hue differences appear to be coded in qualitatively different ways and in different brain regions. These findings have implications for the long-standing debate on the origin and nature of color categories, and also further our understanding of how color is processed by the brain.

  4. New insights into cochlear sound encoding

    PubMed Central

    Moser, Tobias; Vogl, Christian

    2016-01-01

    The inner ear uses specialized synapses to indefatigably transmit sound information from hair cells to spiral ganglion neurons at high rates with submillisecond precision. The emerging view is that hair cell synapses achieve their demanding function by employing an unconventional presynaptic molecular composition. Hair cell active zones hold the synaptic ribbon, an electron-dense projection made primarily of RIBEYE, which tethers a halo of synaptic vesicles and is thought to enable a large readily releasable pool of vesicles and to contribute to its rapid replenishment. Another important presynaptic player is otoferlin, coded by a deafness gene, which assumes a multi-faceted role in vesicular exocytosis and, when disrupted, causes auditory synaptopathy. A functional peculiarity of hair cell synapses is the massive heterogeneity in the sizes and shapes of excitatory postsynaptic currents. Currently, there is controversy as to whether this reflects multiquantal release with a variable extent of synchronization or uniquantal release through a dynamic fusion pore. Another important question in the field has been the precise mechanisms of coupling presynaptic Ca 2+ channels and vesicular Ca 2+ sensors. This commentary provides an update on the current understanding of sound encoding in the cochlea with a focus on presynaptic mechanisms. PMID:27635230

  5. Dynamical encoding of looming, receding, and focussing

    NASA Astrophysics Data System (ADS)

    Longtin, Andre; Clarke, Stephen Elisha; Maler, Leonard; CenterNeural Dynamics Collaboration

    This talk will discuss a non-conventional neural coding task that may apply more broadly to many senses in higher vertebrates. We ask whether and how a non-visual sensory system can focus on an object. We present recent experimental and modeling work that shows how the early sensory circuitry of electric sense can perform such neuronal focusing that is manifested behaviorally. This sense is the main one used by weakly electric fish to navigate, locate prey and communicate in the murky waters of their natural habitat. We show that there is a distance at which the Fisher information of a neuron's response to a looming and receding object is maximized, and that this distance corresponds to a behaviorally relevant one chosen by these animals. Strikingly, this maximum occurs at a bifurcation between tonic firing and bursting. We further discuss how the invariance of this distance to signal attributes can arise, a process that first involves power-law spike frequency adaptation. The talk will also highlight the importance of expanding the classic dual neural encoding of contrast using ON and OFF cells in the context of looming and receding stimuli. The authors acknowledge support from CIHR and NSERC.

  6. Comparative genomics of Shiga toxin encoding bacteriophages

    PubMed Central

    2012-01-01

    Background Stx bacteriophages are responsible for driving the dissemination of Stx toxin genes (stx) across their bacterial host range. Lysogens carrying Stx phages can cause severe, life-threatening disease and Stx toxin is an integral virulence factor. The Stx-bacteriophage vB_EcoP-24B, commonly referred to as Ф24B, is capable of multiply infecting a single bacterial host cell at a high frequency, with secondary infection increasing the rate at which subsequent bacteriophage infections can occur. This is biologically unusual, therefore determining the genomic content and context of Ф24B compared to other lambdoid Stx phages is important to understanding the factors controlling this phenomenon and determining whether they occur in other Stx phages. Results The genome of the Stx2 encoding phage, Ф24B was sequenced and annotated. The genomic organisation and general features are similar to other sequenced Stx bacteriophages induced from Enterohaemorrhagic Escherichia coli (EHEC), however Ф24B possesses significant regions of heterogeneity, with implications for phage biology and behaviour. The Ф24B genome was compared to other sequenced Stx phages and the archetypal lambdoid phage, lambda, using the Circos genome comparison tool and a PCR-based multi-loci comparison system. Conclusions The data support the hypothesis that Stx phages are mosaic, and recombination events between the host, phages and their remnants within the same infected bacterial cell will continue to drive the evolution of Stx phage variants and the subsequent dissemination of shigatoxigenic potential. PMID:22799768

  7. Aging affects neural precision of speech encoding

    PubMed Central

    Anderson, Samira; Parbery-Clark, Alexandra; White-Schwoch, Travis; Kraus, Nina

    2012-01-01

    Older adults frequently report they can hear what is said but cannot understand the meaning, especially in noise. This difficulty may arise from the inability to process rapidly changing elements of speech. Aging is accompanied by a general slowing of neural processing and decreased neural inhibition, both of which likely interfere with temporal processing in auditory and other sensory domains. Age-related reductions in inhibitory neurotransmitter levels and delayed neural recovery can contribute to decreases in the auditory system’s temporal precision. Decreased precision may lead to neural timing delays, reductions in neural response magnitude, and a disadvantage in processing the rapid acoustic changes in speech. The auditory brainstem response (ABR), a scalp-recorded electrical potential, is known for its ability to capture precise neural synchrony within subcortical auditory nuclei; therefore, we hypothesized that a loss of temporal precision results in subcortical timing delays and decreases in response consistency and magnitude. To assess this hypothesis, we recorded ABRs to the speech syllable /da/ in normal hearing younger (ages 18 to 30) and older adult humans (60 to 67). Older adults had delayed ABRs, especially in response to the rapidly changing formant transition, and greater response variability. We also found that older adults had decreased phase locking and smaller response magnitudes than younger adults. Taken together, our results support the theory that older adults have a loss of temporal precision in subcortical encoding of sound, which may account, at least in part, for their difficulties with speech perception. PMID:23055485

  8. Genes Encoding Enzymes Involved in Ethanol Metabolism

    PubMed Central

    Hurley, Thomas D.; Edenberg, Howard J.

    2012-01-01

    The effects of beverage alcohol (ethanol) on the body are determined largely by the rate at which it and its main breakdown product, acetaldehyde, are metabolized after consumption. The main metabolic pathway for ethanol involves the enzymes alcohol dehydrogenase (ADH) and aldehyde dehydrogenase (ALDH). Seven different ADHs and three different ALDHs that metabolize ethanol have been identified. The genes encoding these enzymes exist in different variants (i.e., alleles), many of which differ by a single DNA building block (i.e., single nucleotide polymorphisms [SNPs]). Some of these SNPs result in enzymes with altered kinetic properties. For example, certain ADH1B and ADH1C variants that are commonly found in East Asian populations lead to more rapid ethanol breakdown and acetaldehyde accumulation in the body. Because acetaldehyde has harmful effects on the body, people carrying these alleles are less likely to drink and have a lower risk of alcohol dependence. Likewise, an ALDH2 variant with reduced activity results in acetaldehyde buildup and also has a protective effect against alcoholism. In addition to affecting drinking behaviors and risk for alcoholism, ADH and ALDH alleles impact the risk for esophageal cancer. PMID:23134050

  9. Two-layer contractive encodings for learning stable nonlinear features.

    PubMed

    Schulz, Hannes; Cho, Kyunghyun; Raiko, Tapani; Behnke, Sven

    2015-04-01

    Unsupervised learning of feature hierarchies is often a good strategy to initialize deep architectures for supervised learning. Most existing deep learning methods build these feature hierarchies layer by layer in a greedy fashion using either auto-encoders or restricted Boltzmann machines. Both yield encoders which compute linear projections of input followed by a smooth thresholding function. In this work, we demonstrate that these encoders fail to find stable features when the required computation is in the exclusive-or class. To overcome this limitation, we propose a two-layer encoder which is less restricted in the type of features it can learn. The proposed encoder is regularized by an extension of previous work on contractive regularization. This proposed two-layer contractive encoder potentially poses a more difficult optimization problem, and we further propose to linearly transform hidden neurons of the encoder to make learning easier. We demonstrate the advantages of the two-layer encoders qualitatively on artificially constructed datasets as well as commonly used benchmark datasets. We also conduct experiments on a semi-supervised learning task and show the benefits of the proposed two-layer encoders trained with the linear transformation of perceptrons.

  10. Double image encryption based on phase-amplitude mixed encoding and multistage phase encoding in gyrator transform domains

    NASA Astrophysics Data System (ADS)

    Wang, Qu; Guo, Qing; Lei, Liang

    2013-06-01

    We present a novel method for double image encryption that is based on amplitude-phase mixed encoding and multistage random phase encoding in gyrator transform (GT) domains. In the amplitude-phase mixed encoding operation, a random binary distribution matrix is defined to mixed encode two primitive images to a single complex-valued image, which is then encrypted into a stationary white noise distribution by the multistage phase encoding with GTs. Compared with the earlier methods that uses fully phase encoding, the proposed method reduces the difference between two primitive images in key space and sensitivity to the GT orders. The primitive images can be recovered exactly by applying correct keys with initial conditions of chaotic system, the GT orders and the pixel scrambling operation. Numerical simulations demonstrate that the proposed scheme has considerably high security level and certain robustness against data loss and noise disturbance.

  11. Neutron encoded labeling for peptide identification.

    PubMed

    Rose, Christopher M; Merrill, Anna E; Bailey, Derek J; Hebert, Alexander S; Westphall, Michael S; Coon, Joshua J

    2013-05-21

    Metabolic labeling of cells using heavy amino acids is most commonly used for relative quantitation; however, partner mass shifts also detail the number of heavy amino acids contained within the precursor species. Here, we use a recently developed metabolic labeling technique, NeuCode (neutron encoding) stable isotope labeling with amino acids in cell culture (SILAC), which produces precursor partners spaced ~40 mDa apart to enable amino acid counting. We implement large scale counting of amino acids through a program, "Amino Acid Counter", which determines the most likely combination of amino acids within a precursor based on NeuCode SILAC partner spacing and filters candidate peptide sequences during a database search using this information. Counting the number of lysine residues for precursors selected for MS/MS decreases the median number of candidate sequences from 44 to 14 as compared to an accurate mass search alone (20 ppm). Furthermore, the ability to co-isolate and fragment NeuCode SILAC partners enables counting of lysines in product ions, and when the information is used, the median number of candidates is reduced to 7. We then demonstrate counting leucine in addition to lysine results in a 6-fold decrease in search space, 43 to 7, when compared to an accurate mass search. We use this scheme to analyze a nanoLC-MS/MS experiment and demonstrate that accurate mass plus lysine and leucine counting reduces the number of candidate sequences to one for ~20% of all precursors selected, demonstrating an ability to identify precursors without MS/MS analysis.

  12. Neutron Encoded Labeling for Peptide Identification

    PubMed Central

    Rose, Christopher M.; Merrill, Anna E.; Bailey, Derek J.; Hebert, Alexander S.; Westphall, Michael S.; Coon, Joshua J.

    2013-01-01

    Metabolic labeling of cells using heavy amino acids is most commonly used for relative quantitation; however, partner mass shifts also detail the number of heavy amino acids contained within the precursor species. Here, we use a recently developed metabolic labeling technique, NeuCode (neutron encoding) stable isotope labeling with amino acids in cell culture (SILAC), which produces precursor partners spaced ~40 mDa apart to enable amino acid counting. We implement large scale counting of amino acids through a program, “Amino Acid Counter”, which determines the most likely combination of amino acids within a precursor based on NeuCode SILAC partner spacing and filters candidate peptide sequences during a database search using this information. Counting the number of lysine residues for precursors selected for MS/MS decreases the median number of candidate sequences from 44 to 14 as compared to an accurate mass search alone (20 ppm). Furthermore, the ability to co-isolate and fragment NeuCode SILAC partners enables counting of lysines in product ions, and when the information is used, the median number of candidates is reduced to 7. We then demonstrate counting leucine in addition to lysine results in a 6-fold decrease in search space, 43 to 7, when compared to an accurate mass search. We use this scheme to analyze a nanoLC-MS/MS experiment and demonstrate that accurate mass plus lysine and leucine counting reduces the number of candidate sequences to one for ~20% of all precursors selected, demonstrating an ability to identify precursors without MS/MS analysis. PMID:23638792

  13. Electrocorticogram encoding of upper extremity movement duration.

    PubMed

    Wang, Po T; King, Christine E; McCrimmon, Colin M; Shaw, Susan J; Millett, David E; Liu, Charles Y; Chui, Luis A; Nenadic, Zoran; Do, An H

    2014-01-01

    Electrocorticogram (ECoG) is a promising long-term signal acquisition platform for brain-computer interface (BCI) systems such as upper extremity prostheses. Several studies have demonstrated decoding of arm and finger trajectories from ECoG high-gamma band (80-160 Hz) signals. In this study, we systematically vary the velocity of three elementary movement types (pincer grasp, elbow and shoulder flexion/extension) to test whether the high-gamma band encodes for the entirety of the movements, or merely the movement onset. To this end, linear regression models were created for the durations and amplitudes of high-gamma power bursts and velocity deflections. One subject with 8×8 high-density ECoG grid (4 mm center-to-center electrode spacing) participated in the experiment. The results of the regression models indicated that the power burst durations varied directly with the movement durations (e.g. R(2)=0.71 and slope=1.0 s/s for elbow). The persistence of power bursts for the duration of the movement suggests that the primary motor cortex (M1) is likely active for the entire duration of a movement, instead of providing a marker for the movement onset. On the other hand, the amplitudes were less co-varied. Furthermore, the electrodes of maximum R(2) conformed to somatotopic arrangement of the brain. Also, electrodes responsible for flexion and extension movements could be resolved on the high-density grid. In summary, these findings suggest that M1 may be directly responsible for activating the individual muscle motor units, and future BCI may be able to utilize them for better control of prostheses.

  14. Genetically Encoded Protein Sensors of Membrane Potential.

    PubMed

    Storace, Douglas; Rad, Masoud Sepehri; Han, Zhou; Jin, Lei; Cohen, Lawrence B; Hughes, Thom; Baker, Bradley J; Sung, Uhna

    2015-01-01

    Organic voltage-sensitive dyes offer very high spatial and temporal resolution for imaging neuronal function. However these dyes suffer from the drawbacks of non-specificity of cell staining and low accessibility of the dye to some cell types. Further progress in imaging activity is expected from the development of genetically encoded fluorescent sensors of membrane potential. Cell type specificity of expression of these fluorescent protein (FP) voltage sensors can be obtained via several different mechanisms. One is cell type specificity of infection by individual virus subtypes. A second mechanism is specificity of promoter expression in individual cell types. A third, depends on the offspring of transgenic animals with cell type specific expression of cre recombinase mated with an animal that has the DNA for the FP voltage sensor in all of its cells but its expression is dependent on the recombinase activity. Challenges remain. First, the response time constants of many of the new FP voltage sensors are slower (2-10 ms) than those of organic dyes. This results in a relatively small fractional fluorescence change, ΔF/F, for action potentials. Second, the largest signal presently available is only ~40% for a 100 mV depolarization and many of the new probes have signals that are substantially smaller. Large signals are especially important when attempting to detect fast events because the shorter measurement interval results in a relatively small number of detected photons and therefore a relatively large shot noise (see Chap. 1). Another kind of challenge has occurred when attempts were made to transition from one species to another or from one cell type to another or from cell culture to in vivo measurements.Several laboratories have recently described a number of novel FP voltage sensors. Here we attempt to critically review the current status of these developments in terms of signal size, time course, and in vivo function.

  15. What physics is encoded in Maxwell's equations?

    NASA Astrophysics Data System (ADS)

    Kosyakov, B. P.

    2005-08-01

    We reconstruct Maxwell's equations showing that a major part of the information encoded in them is taken from topological properties of spacetime, and the residual information, divorced from geometry, which represents the physical contents of electrodynamics, %these equations, translates into four assumptions:(i) locality; (ii) linearity; %of the dynamical law; (iii) identity of the charge-source and the charge-coupling; and (iv) lack of magnetic monopoles. However, a closer inspection of symmetries peculiar to electrodynamics shows that these assumptions may have much to do with geometry. Maxwell's equations tell us that we live in a three-dimensional space with trivial (Euclidean) topology; time is a one-dimensional unidirectional and noncompact continuum; and spacetime is endowed with a light cone structure readable in the conformal invariance of electrodynamics. Our geometric feelings relate to the fact that Maxwell's equations are built in our brain, hence our space and time orientation, our visualization and imagination capabilities are ensured by perpetual instinctive processes of solving Maxwell's equations. People are usually agree in their observations of angle relations, for example, a right angle is never confused with an angle slightly different from right. By contrast, we may disagree in metric issues, say, a colour-blind person finds the light wave lengths quite different from those found by a man with normal vision. This lends support to the view that conformal invariance of Maxwell's equations is responsible for producing our notion of space. Assuming that our geometric intuition is guided by our innate realization of electrodynamical laws, some abnormal mental phenomena, such as clairvoyance, may have a rational explanation.

  16. Stress as a mnemonic filter: Interactions between medial temporal lobe encoding processes and post-encoding stress.

    PubMed

    Ritchey, Maureen; McCullough, Andrew M; Ranganath, Charan; Yonelinas, Andrew P

    2017-01-01

    Acute stress has been shown to modulate memory for recently learned information, an effect attributed to the influence of stress hormones on medial temporal lobe (MTL) consolidation processes. However, little is known about which memories will be affected when stress follows encoding. One possibility is that stress interacts with encoding processes to selectively protect memories that had elicited responses in the hippocampus and amygdala, two MTL structures important for memory formation. There is limited evidence for interactions between encoding processes and consolidation effects in humans, but recent studies of consolidation in rodents have emphasized the importance of encoding "tags" for determining the impact of consolidation manipulations on memory. Here, we used functional magnetic resonance imaging in humans to test the hypothesis that the effects of post-encoding stress depend on MTL processes observed during encoding. We found that changes in stress hormone levels were associated with an increase in the contingency of memory outcomes on hippocampal and amygdala encoding responses. That is, for participants showing high cortisol reactivity, memories became more dependent on MTL activity observed during encoding, thereby shifting the distribution of recollected events toward those that had elicited relatively high activation. Surprisingly, this effect was generally larger for neutral, compared to emotionally negative, memories. The results suggest that stress does not uniformly enhance memory, but instead selectively preserves memories tagged during encoding, effectively acting as mnemonic filter. © 2016 Wiley Periodicals, Inc.

  17. Nonselective excitation of pulsed ELDOR using multi-frequency microwaves.

    PubMed

    Asada, Yuki; Mutoh, Risa; Ishiura, Masahiro; Mino, Hiroyuki

    2011-12-01

    The use of a polychromatic microwave pulse to expand the pumping bandwidth in pulsed electron-electron double resonance (PELDOR) was investigated. The pumping pulse was applied in resonance with the broad (∼100 mT) electron paramagnetic resonance (EPR) signal of the manganese cluster of photosystem II in the S2 state. The observation pulses were in resonance with the narrow EPR signal of the tyrosine radical, YD·. It was found that in the case of the polychromatic pumping pulse containing five harmonics with the microwave frequencies between 8.5 and 10.5 GHz the PELDOR effect corresponding to the dipole interaction between the Mn cluster and YD· was about 2.9 times larger than that achieved with a monochromatic pulse. In addition to the dipolar modulation, the nuclear modulation effects were observed. The effects could be suppressed by averaging the PELDOR trace over the time interval between the observation microwave pulses. The polychromatic excitation technique described will be useful for improving the PELDOR sensitivity in the measurements of long distances in biological samples, where the pair consists of a radical with a narrow EPR spectrum and slow phase relaxation, and a metal center that has a broad EPR spectrum and a short phase relaxation time.

  18. Advanced Multi-Frequency Inversion Methods for Classifying Acoustic Scatterers

    DTIC Science & Technology

    2002-09-30

    lateral view of the copepod in the silhouette image was rotated so that the long axis of the animal was horizontal and then the perimeter of the prosome ...points along the prosom e and urosom e. D . The digitized points are scaled using the dim ensions of the scale bar and plotted in 2D space. E . The

  19. Control system architecture of QUIJOTE multi-frequency instrument

    NASA Astrophysics Data System (ADS)

    Gómez-Reñasco, María. F.; Aguiar, Marta; Herreros, José Miguel; Hoyland, Roger J.; Sánchez de la Rosa, Vicente; Vega-Moreno, Afrodisio; Viera-Curbelo, Teodora; Génova-Santos, Ricardo; López-Caraballo, Carlos; Rebolo, Rafael; Rubiño-Martín, Jose Alberto

    2012-09-01

    The QUIJOTE-CMB experiment has been described in previous publications. Here we describe the architecture of the control system, hardware and software, of the QUIJOTE I instrument (MFI). It is a multi-channel instrument with five separate polarimeters: two of which operate at 10-14 GHz, two of which operate at 16-20 GHz, and a central polarimeter at 26-36 GHz. Each polarimeter can rotate at a speed of up to 1 Hz and also can move to discrete angular positions which allow the linear polar parameters Q, U and I to be derived. The instrument is installed in an alt-azimuth telescope which implements several operational modes: movement around the azimuth axis at a constant velocity while the elevation axis is held at a fixed elevation; tracking of a sky object; and raster of a rectangular area both in horizontal and sky coordinates. The control system of both, telescope and instrument, is based in the following technologies: an LXI-VXI bus is used for the signal acquisition system; an EtherCAT bus implements software PLCs developed in TwinCAT to perform the movement of the 5 polarimeters and the 2 axes of the telescope. Science signal, angular positions of the 5 polarimeters and telescope coordinates are sampled at up to 4000 Hz. All these data are correlated by a time stamp obtained from an external GPS clock implementing the Precise Time Protocol-1588 which provides synchronization to less than 1 microsecond. The control software also acquires housekeeping (HK) from the different subsystems. LabVIEW implements the instrument user interface.

  20. Precision of multi-frequency electronic apex locators.

    PubMed

    George, Roy

    2016-09-01

    Data sourcesCochrane Central Register of Controlled Trials, Medline, Embase and Scopus databases.Study selectionStudies that reported the precision of electronic apex locators (EALs) in locating the apical constriction (AC) in primary root canal treatment of human teeth compared with a histologic evaluation of the AC were considered.Data extraction and synthesisData were extracted and quality assessed independently by two reviewers.ResultsTen studies were included, reporting on 1105 EAL measurements. Seven studies were considered to be at high risk of bias and three at low risk. Four different EALs were evaluated; Root ZX (J Morita, Tokyo, Japan), Justy II (Hager & Werken GmbH & Co, Duisburg, Germany), Endy 5000 (Loser Co, Leverkusen, Germany) and Endox (Lysis Co, Milan, Italy). Three EALs, Root ZX, Justy II and Endy 5000 were more accurate than the Endox in determining the distance between the file tip and the apical constriction. Pulp status was only available for 194 (17.55%) of the measurements. The status of the pulp (vital or necrotic) had no significant effect on precision.ConclusionsThe precision of electronic working length measurement depends on the device used and the type of irrigation and is not influenced by the status of the pulp tissue.

  1. Distributed coupling and multi-frequency microwave accelerators

    DOEpatents

    Tantawi, Sami G.; Li, Zenghai; Borchard, Philipp

    2016-07-05

    A microwave circuit for a linear accelerator has multiple metallic cell sections, a pair of distribution waveguide manifolds, and a sequence of feed arms connecting the manifolds to the cell sections. The distribution waveguide manifolds are connected to the cell sections so that alternating pairs of cell sections are connected to opposite distribution waveguide manifolds. The distribution waveguide manifolds have concave modifications of their walls opposite the feed arms, and the feed arms have portions of two distinct widths. In some embodiments, the distribution waveguide manifolds are connected to the cell sections by two different types of junctions adapted to allow two frequency operation. The microwave circuit may be manufactured by making two quasi-identical parts, and joining the two parts to form the microwave circuit, thereby allowing for many manufacturing techniques including electron beam welding, and thereby allowing the use of un-annealled copper alloys, and hence greater tolerance to high gradient operation.

  2. Non-invasive thermometry with multi-frequency microwave radiometry.

    PubMed

    Mizushina, S; Shimizu, T; Sugiura, T

    1992-01-01

    The present status of the development of a non-invasive thermometer based on microwave radiometry at our laboratory is reported. We have developed a model fitting technique combined with a Monte Carlo technique to retrieve temperature-depth profiles from multi (4-6)-frequency-band microwave radiometric data along with confidence intervals (2-sigma) of tissue temperatures as a function of depth. In order to make the radiometric technique compatible with the heating, brightness temperatures are measured through a 1 cm thick water bolus. Results of phantom experiments are presented to demonstrate the above capabilities of the method. Numerical simulation studies have shown that 2-sigma intervals would be 1.0 K or less over a 0-4 cm range and 1.4 K at 5 cm from the surface with using a six-band, 1-5 GHz radiometer having brightness temperature resolution of 0.03 K (3 s integration time). The six-band instrument is currently being assembled at our laboratory.

  3. Nonselective excitation of pulsed ELDOR using multi-frequency microwaves

    NASA Astrophysics Data System (ADS)

    Asada, Yuki; Mutoh, Risa; Ishiura, Masahiro; Mino, Hiroyuki

    2011-12-01

    The use of a polychromatic microwave pulse to expand the pumping bandwidth in pulsed electron-electron double resonance (PELDOR) was investigated. The pumping pulse was applied in resonance with the broad (˜100 mT) electron paramagnetic resonance (EPR) signal of the manganese cluster of photosystem II in the S 2 state. The observation pulses were in resonance with the narrow EPR signal of the tyrosine radical, YDrad . It was found that in the case of the polychromatic pumping pulse containing five harmonics with the microwave frequencies between 8.5 and 10.5 GHz the PELDOR effect corresponding to the dipole interaction between the Mn cluster and YDrad was about 2.9 times larger than that achieved with a monochromatic pulse. In addition to the dipolar modulation, the nuclear modulation effects were observed. The effects could be suppressed by averaging the PELDOR trace over the time interval between the observation microwave pulses. The polychromatic excitation technique described will be useful for improving the PELDOR sensitivity in the measurements of long distances in biological samples, where the pair consists of a radical with a narrow EPR spectrum and slow phase relaxation, and a metal center that has a broad EPR spectrum and a short phase relaxation time.

  4. Simultaneous multi-frequency imaging observations of solar microwave bursts

    NASA Technical Reports Server (NTRS)

    Kundu, M. R.; White, S. M.; Schmahl, E. J.

    1989-01-01

    The results of simultaneous two-frequency imaging observations of solar microwave bursts with the Very Large Array are reviewed. Simultaneous 2 and 6 cm observations have been made of bursts which are optically thin at both frequencies, or optically thick at the lower frequency. In the latter case, the source structure may differ at the two frequencies, but the two sources usually seem to be related. However, this is not always true of simultaneous 6 and 20 cm observations. The results have implications for the analysis of nonimaging radio data of solar and stellar flares.

  5. Far-field imaging with a multi-frequency metalens

    SciTech Connect

    Jouvaud, C. Ourir, A.; Rosny, J. de

    2014-06-16

    A metalens, i.e., a dense array of identical resonators, allows to image an object pattern at subwavelength scale from far field radiation field. Here, we show that the efficiency can be improved when the resonant frequencies of the cell are distributed over a given frequency range. Because in such systems each eigen mode is localized, the subwavelength image is built from a spectral analysis of the radiated field. A simple model based on coupled resonant dipoles is used to find the best frequency distribution. This multifrequency metalens approach is validated using a flat array of split ring resonators. We experimentally demonstrate the subwavelength resolution of such a device at microwave range.

  6. Modeling multi-frequency diurnal backscatter from a walnut orchard

    NASA Technical Reports Server (NTRS)

    Mcdonald, Kyle C.; Dobson, Myron C.; Ulaby, Fawwaz T.

    1991-01-01

    The Michigan Microwave Canopy Scattering Model (MIMICS) is used to model scatterometer data that were obtained during the August 1987 EOS (Earth Observing System) synergism study. During this experiment, truck-based scatterometers were used to measure radar backscatter from a walnut orchard in Fresno County, California. Multipolarized L- and X-band data were recorded for orchard plots for which dielectric and evapotranspiration characteristics were monitored. MIMICS is used to model a multiangle data set in which a single orchard plot was observed at varying impedance angles and a series of diurnal measurements in which backscatter from this same plot was measured continuously over several 24-h periods. MIMICS accounts for variations in canopy backscatter driven by changes in canopy state that occur diurnally as well as on longer time scales. L-band backscatter is dependent not only on properties of the vegetation but also on properties of the underlying soil surface. The behavior of the X-band backscatter is dominated by properties of the tree crowns.

  7. Scanning mechanism study for multi-frequency microwave radiometers

    NASA Technical Reports Server (NTRS)

    Shin, I.

    1976-01-01

    Scanning mode for a microwave radiometer having large aperture antenna is determined from scientific needs by engineering tradeoffs. Two configurations of the scan drive mechanism with an integral momentum compensation are formulated for 1.OM and 1.4M diameter antennas. As the formulation is based on currently available components, it is possible to design and fabricate the formulated mechanism without new hardware development. A preliminary specification for major components of formulated drives is also included in the report.

  8. Discrete Events in Word Encoding: The Locus of Elaboration

    ERIC Educational Resources Information Center

    Walter, Donald A.

    1977-01-01

    A model dealing with the function of elaboration in word encoding was evaluated using a 2-list recognition procedure that varied encoding time within the presentation list. The model predicted that elaboration, reflected in the incidence of false positives to associates of words presented in the recognition list, would increase as presentation…

  9. Multiple channel secure communication using chaotic system encoding

    SciTech Connect

    Miller, S.L.

    1996-12-31

    fA new method to encrypt signals using chaotic systems has been developed that offers benefits over conventional chaotic encryption methods. The method simultaneously encodes multiple plaintext streams using a chaotic system; a key is required to extract the plaintext from the chaotic cipertext. A working prototype demonstrates feasibility of the method by simultaneously encoding and decoding multiple audio signals using electrical circuits.

  10. The Contribution of Encoding and Retrieval Processes to Proactive Interference

    ERIC Educational Resources Information Center

    Kliegl, Oliver; Pastötter, Bernhard; Bäuml, Karl-Heinz T.

    2015-01-01

    Proactive interference (PI) refers to the finding that memory for recently studied (target) material can be impaired by the prior study of other (nontarget) material. Previous accounts of PI differed in whether they attributed PI to impaired retrieval or impaired encoding. Here, we suggest an integrated encoding-retrieval account, which assigns a…

  11. Functional Neuroimaging of Self-Referential Encoding with Age

    ERIC Educational Resources Information Center

    Gutchess, Angela H.; Kensinger, Elizabeth A.; Schacter, Daniel L.

    2010-01-01

    Aging impacts memory formation and the engagement of frontal and medial temporal regions. However, much of the research to date has focused on the encoding of neutral verbal and visual information. The present fMRI study investigated age differences in a social encoding task while participants made judgments about the self or another person.…

  12. Optical Position Encoders for High or Low Temperatures

    NASA Technical Reports Server (NTRS)

    Leviton, Douglas B.

    2004-01-01

    Optoelectronic pattern-recognition systems (optical encoders) for measuring positions of objects of interest at temperatures well below or well above room temperature are undergoing development. At present, the development effort is concentrated on absolute linear, rotary, and Cartesian encoders and Cartesian autocollimators for scientific instruments that operate in cryostats.

  13. A VLSI architecture for high performance CABAC encoding

    NASA Astrophysics Data System (ADS)

    Shojania, Hassan; Sudharsanan, Subramania

    2005-07-01

    One key technique for improving the coding e+/-ciency of H.264 video standard is the entropy coder, context- adaptive binary arithmetic coder (CABAC). However the complexity of the encoding process of CABAC is signicantly higher than the table driven entropy encoding schemes such as the Hu®man coding. CABAC is also bit serial and its multi-bit parallelization is extremely di+/-cult. For a high denition video encoder, multi-giga hertz RISC processors will be needed to implement the CABAC encoder. In this paper, we provide an e+/-cient, pipelined VLSI architecture for CABAC encoding along with an analysis of critical issues. The solution encodes a binary symbol every cycle. An FPGA implementation of the proposed scheme capable of 104 Mbps encoding rate and test results are presented. An ASIC synthesis and simulation for a 0.18 ¹m process technology indicates that the design is capable of encoding 190 million binary symbols per second using an area of 0.35 mm2. ¤

  14. Modeling the Control of Phonological Encoding in Bilingual Speakers

    ERIC Educational Resources Information Center

    Roelofs, Ardi; Verhoef, Kim

    2006-01-01

    Phonological encoding is the process by which speakers retrieve phonemic segments for morphemes from memory and use the segments to assemble phonological representations of words to be spoken. When conversing in one language, bilingual speakers have to resist the temptation of encoding word forms using the phonological rules and representations of…

  15. Principles of metadata organization at the ENCODE data coordination center.

    PubMed

    Hong, Eurie L; Sloan, Cricket A; Chan, Esther T; Davidson, Jean M; Malladi, Venkat S; Strattan, J Seth; Hitz, Benjamin C; Gabdank, Idan; Narayanan, Aditi K; Ho, Marcus; Lee, Brian T; Rowe, Laurence D; Dreszer, Timothy R; Roe, Greg R; Podduturi, Nikhil R; Tanaka, Forrest; Hilton, Jason A; Cherry, J Michael

    2016-01-01

    The Encyclopedia of DNA Elements (ENCODE) Data Coordinating Center (DCC) is responsible for organizing, describing and providing access to the diverse data generated by the ENCODE project. The description of these data, known as metadata, includes the biological sample used as input, the protocols and assays performed on these samples, the data files generated from the results and the computational methods used to analyze the data. Here, we outline the principles and philosophy used to define the ENCODE metadata in order to create a metadata standard that can be applied to diverse assays and multiple genomic projects. In addition, we present how the data are validated and used by the ENCODE DCC in creating the ENCODE Portal (https://www.encodeproject.org/). Database URL: www.encodeproject.org.

  16. Encoding of multi-alphabet sources by binary arithmetic coding

    NASA Astrophysics Data System (ADS)

    Guo, Muling; Oka, Takahumi; Kato, Shigeo; Kajiwara, Hiroshi; Kawamura, Naoto

    1998-12-01

    In case of encoding a multi-alphabet source, the multi- alphabet symbol sequence can be encoded directly by a multi- alphabet arithmetic encoder, or the sequence can be first converted into several binary sequences and then each binary sequence is encoded by binary arithmetic encoder, such as the L-R arithmetic coder. Arithmetic coding, however, requires arithmetic operations for each symbol and is computationally heavy. In this paper, a binary representation method using Huffman tree is introduced to reduce the number of arithmetic operations, and a new probability approximation for L-R arithmetic coding is further proposed to improve the coding efficiency when the probability of LPS (Least Probable Symbol) is near 0.5. Simulation results show that our proposed scheme has high coding efficacy and can reduce the number of coding symbols.

  17. Unequally spaced four levels phase encoding in holographic data storage

    NASA Astrophysics Data System (ADS)

    Xu, Ke; Huang, Yong; Lin, Xiao; Cheng, Yabin; Li, Xiaotong; Tan, Xiaodi

    2016-12-01

    Holographic data storage system is a candidate for the information recording due to its large storage capacity and high transfer rate. We propose an unequally spaced four levels phase encoding in the holographic data storage system here. Compared with two levels or three levels phase encoding, four levels phase encoding effectively improves the code rate. While more phase levels can further improve code rate, it also puts higher demand for the camera to differentiate the resulting smaller grayscale difference. Unequally spaced quaternary level phases eliminates the ambiguity of pixels with same phase difference relative to reference light compared to equally spaced quaternary levels. Corresponding encoding pattern design with phase pairs as the data element and decoding method were developed. Our encoding improves the code rate up to 0.875, which is 1.75 times of the conventional amplitude method with an error rate of 0.13 % according to our simulation results.

  18. Principles of metadata organization at the ENCODE data coordination center

    PubMed Central

    Hong, Eurie L.; Sloan, Cricket A.; Chan, Esther T.; Davidson, Jean M.; Malladi, Venkat S.; Strattan, J. Seth; Hitz, Benjamin C.; Gabdank, Idan; Narayanan, Aditi K.; Ho, Marcus; Lee, Brian T.; Rowe, Laurence D.; Dreszer, Timothy R.; Roe, Greg R.; Podduturi, Nikhil R.; Tanaka, Forrest; Hilton, Jason A.; Cherry, J. Michael

    2016-01-01

    The Encyclopedia of DNA Elements (ENCODE) Data Coordinating Center (DCC) is responsible for organizing, describing and providing access to the diverse data generated by the ENCODE project. The description of these data, known as metadata, includes the biological sample used as input, the protocols and assays performed on these samples, the data files generated from the results and the computational methods used to analyze the data. Here, we outline the principles and philosophy used to define the ENCODE metadata in order to create a metadata standard that can be applied to diverse assays and multiple genomic projects. In addition, we present how the data are validated and used by the ENCODE DCC in creating the ENCODE Portal (https://www.encodeproject.org/). Database URL: www.encodeproject.org PMID:26980513

  19. Research on optoelectronic image identifying technology of biomolecule encoding

    NASA Astrophysics Data System (ADS)

    Li, Bangxu; Yuan, Xiuhua; Cao, Yuting

    2007-12-01

    An innovation way to detect and identify biomolecule encoding is studied and a practical optical-mechanical-electrical integrative sensor system is accomplished, for which, a comprehensive analysis of the spectrum information, grayscale information as well as the location information is conducted. In our system, a LED as a light source, is used to provide a uniform illumination, and a CCD image sensor is used to obtain gray grading information of biomolecule encoding chip. And then, Wavelet analysis technology is used to eliminate noise and smooth the image signals. The location of each encoding dot and its average gray can be realized automatically by means of these methods, the features of the biomolecule encoding can be identified. And all of the characteristics on molecule encoding are displayed on screen in several different ways finally. Compared with NMR and IR technique, our design of the system is small in size, easy to operate and low cost.

  20. Face Encoding and Recognition in the Human Brain

    NASA Astrophysics Data System (ADS)

    Haxby, James V.; Ungerleider, Leslie G.; Horwitz, Barry; Maisog, Jose Ma.; Rapoport, Stanley I.; Grady, Cheryl L.

    1996-01-01

    A dissociation between human neural systems that participate in the encoding and later recognition of new memories for faces was demonstrated by measuring memory task-related changes in regional cerebral blood flow with positron emission tomography. There was almost no overlap between the brain structures associated with these memory functions. A region in the right hippocampus and adjacent cortex was activated during memory encoding but not during recognition. The most striking finding in neocortex was the lateralization of prefrontal participation. Encoding activated left prefrontal cortex, whereas recognition activated right prefrontal cortex. These results indicate that the hippocampus and adjacent cortex participate in memory function primarily at the time of new memory encoding. Moreover, face recognition is not mediated simply by recapitulation of operations performed at the time of encoding but, rather, involves anatomically dissociable operations.

  1. Modeling quantization matrices for perceptual image / video encoding

    NASA Astrophysics Data System (ADS)

    Zhang, Huipin; Cote, Guy

    2008-01-01

    Quantization matrix is an important encoding tool for discrete cosine transform (DCT) based perceptual image / video encoding in that DCT coefficients can be quantized according to the sensitivity of the human visual system to the coefficients' corresponding spatial frequencies. A quadratic model is introduced to parameterize the quantization matrices. This model is then used to optimize quantization matrices for a specific bitrate or bitrate range by maximizing the expected encoding quality via a trial based multidimensional numerical search method. The model is simple yet it characterizes the slope and the convexity of the quantization matrices along the horizontal, the vertical and the diagonal directions. The advantage of the model for improving perceptual video encoding quality is demonstrated with simulations using H.264 / AVC video encoding.

  2. High-resolution MRI encoding using radiofrequency phase gradients.

    PubMed

    Sharp, Jonathan C; King, Scott B; Deng, Qunli; Volotovskyy, Vyacheslav; Tomanek, Boguslaw

    2013-11-01

    Although MRI offers highly diagnostic medical imagery, patient access to this modality worldwide is very limited when compared with X-ray or ultrasound. One reason for this is the expense and complexity of the equipment used to generate the switched magnetic fields necessary for MRI encoding. These field gradients are also responsible for intense acoustic noise and have the potential to induce nerve stimulation. We present results with a new MRI encoding principle which operates entirely without the use of conventional B0 field gradients. This new approach--'Transmit Array Spatial Encoding' (TRASE)--uses only the resonant radiofrequency (RF) field to produce Fourier spatial encoding equivalent to conventional MRI. k-space traversal (image encoding) is achieved by spin refocusing with phase gradient transmit fields in spin echo trains. A transmit coil array, driven by just a single transmitter channel, was constructed to produce four phase gradient fields, which allows the encoding of two orthogonal spatial axes. High-resolution two-dimensional-encoded in vivo MR images of hand and wrist were obtained at 0.2 T. TRASE exploits RF field phase gradients, and offers the possibility of very low-cost diagnostics and novel experiments exploiting unique capabilities, such as imaging without disturbance of the main B0 magnetic field. Lower field imaging (<1 T) and micro-imaging are favorable application domains as, in both cases, it is technically easier to achieve the short RF pulses desirable for long echo trains, and also to limit RF power deposition. As TRASE is simply an alternative mechanism (and technology) of moving through k space, there are many close analogies between it and conventional B0 -encoded techniques. TRASE is compatible with both B0 gradient encoding and parallel imaging, and so hybrid sequences containing all three spatial encoding approaches are possible.

  3. Characterization of the gene encoding mouse serum amyloid P component. Comparison with genes encoding other pentraxins.

    PubMed Central

    Whitehead, A S; Rits, M

    1989-01-01

    A CBA/J-strain mouse serum amyloid P component (SAP) genomic clone was isolated and analysed. The clone contains the entire SAP gene and specifies a primary transcript of 1065 nucleotide residues. This comprises a first exon of 206 nucleotide residues containing the mRNA 5'-untranslated region and sequence encoding the pre-SAP leader peptide and the first two amino acid residues of mature SAP separated by a single 110-base intron from a 749-nucleotide-residue second exon containing sequence encoding the bulk of the mature SAP and specifying the mRNA 3'-untranslated region. The overall organization is similar to that of the human SAP gene, and the coding region and intron sequences are highly conserved. The SAP RNA cap site was defined by primer extension analysis of polyadenylated acute-phase liver RNA. The 5'-region of the mouse SAP gene contains modified CAAT and TATA promoter elements preceded by a putative hepatocyte-nuclear-factor-1-recognition site; these structures are in a region that is highly homologous to the corresponding region of the human SAP gene. Comparisons of the mouse SAP gene structure and derived amino acid sequence with those of other mammalian pentraxins were made. Images Fig. 3. PMID:2481440

  4. Small-molecule discovery from DNA-encoded chemical libraries.

    PubMed

    Kleiner, Ralph E; Dumelin, Christoph E; Liu, David R

    2011-12-01

    Researchers seeking to improve the efficiency and cost effectiveness of the bioactive small-molecule discovery process have recently embraced selection-based approaches, which in principle offer much higher throughput and simpler infrastructure requirements compared with traditional small-molecule screening methods. Since selection methods benefit greatly from an information-encoding molecule that can be readily amplified and decoded, several academic and industrial groups have turned to DNA as the basis for library encoding and, in some cases, library synthesis. The resulting DNA-encoded synthetic small-molecule libraries, integrated with the high sensitivity of PCR and the recent development of ultra high-throughput DNA sequencing technology, can be evaluated very rapidly for binding or bond formation with a target of interest while consuming minimal quantities of material and requiring only modest investments of time and equipment. In this tutorial review we describe the development of two classes of approaches for encoding chemical structures and reactivity with DNA: DNA-recorded library synthesis, in which encoding and library synthesis take place separately, and DNA-directed library synthesis, in which DNA both encodes and templates library synthesis. We also describe in vitro selection methods used to evaluate DNA-encoded libraries and summarize successful applications of these approaches to the discovery of bioactive small molecules and novel chemical reactivity.

  5. Study on self-calibration angle encoder using simulation method

    NASA Astrophysics Data System (ADS)

    Wang, Yan; Xue, Zi; Huang, Yao; Wang, Xiaona

    2016-01-01

    The angle measurement technology is very important in precision manufacture, optical industry, aerospace, aviation and navigation, etc. Further, the angle encoder, which uses concept `subdivision of full circle (2π rad=360°)' and transforms the angle into number of electronic pulse, is the most common instrument for angle measurement. To improve the accuracy of the angle encoder, a novel self-calibration method was proposed that enables the angle encoder to calibrate itself without angle reference. An angle deviation curve among 0° to 360° was simulated with equal weights Fourier components for the study of the self-calibration method. In addition, a self-calibration algorithm was used in the process of this deviation curve. The simulation result shows the relationship between the arrangement of multi-reading heads and the Fourier components distribution of angle encoder deviation curve. Besides, an actual self-calibration angle encoder was calibrated by polygon angle standard in national institute of metrology, China. The experiment result indicates the actual self-calibration effect on the Fourier components distribution of angle encoder deviation curve. In the end, the comparison, which is between the simulation self-calibration result and the experiment self-calibration result, reflects good consistency and proves the reliability of the self-calibration angle encoder.

  6. pENCODE: a plant encyclopedia of DNA elements.

    PubMed

    Lane, Amanda K; Niederhuth, Chad E; Ji, Lexiang; Schmitz, Robert J

    2014-01-01

    ENCODE projects exist for many eukaryotes, including humans, but as of yet no defined project exists for plants. A plant ENCODE would be invaluable to the research community and could be more readily produced than its metazoan equivalents by capitalizing on the preexisting infrastructure provided from similar projects. Collecting and normalizing plant epigenomic data for a range of species will facilitate hypothesis generation, cross-species comparisons, annotation of genomes, and an understanding of epigenomic functions throughout plant evolution. Here, we discuss the need for such a project, outline the challenges it faces, and suggest ways forward to build a plant ENCODE.

  7. Integrated source and channel encoded digital communications system design study

    NASA Technical Reports Server (NTRS)

    Huth, G. K.

    1974-01-01

    Studies on the digital communication system for the direct communication links from ground to space shuttle and the links involving the Tracking and Data Relay Satellite (TDRS). Three main tasks were performed:(1) Channel encoding/decoding parameter optimization for forward and reverse TDRS links,(2)integration of command encoding/decoding and channel encoding/decoding; and (3) modulation coding interface study. The general communication environment is presented to provide the necessary background for the tasks and to provide an understanding of the implications of the results of the studies.

  8. Method and apparatus for optical encoding with compressible imaging

    NASA Technical Reports Server (NTRS)

    Leviton, Douglas B. (Inventor)

    2006-01-01

    The present invention presents an optical encoder with increased conversion rates. Improvement in the conversion rate is a result of combining changes in the pattern recognition encoder's scale pattern with an image sensor readout technique which takes full advantage of those changes, and lends itself to operation by modern, high-speed, ultra-compact microprocessors and digital signal processors (DSP) or field programmable gate array (FPGA) logic elements which can process encoder scale images at the highest speeds. Through these improvements, all three components of conversion time (reciprocal conversion rate)--namely exposure time, image readout time, and image processing time--are minimized.

  9. Method and system for efficiently searching an encoded vector index

    DOEpatents

    Bui, Thuan Quang; Egan, Randy Lynn; Kathmann, Kevin James

    2001-09-04

    Method and system aspects for efficiently searching an encoded vector index are provided. The aspects include the translation of a search query into a candidate bitmap, and the mapping of data from the candidate bitmap into a search result bitmap according to entry values in the encoded vector index. Further, the translation includes the setting of a bit in the candidate bitmap for each entry in a symbol table that corresponds to candidate of the search query. Also included in the mapping is the identification of a bit value in the candidate bitmap pointed to by an entry in an encoded vector.

  10. A user's guide to the encyclopedia of DNA elements (ENCODE).

    PubMed

    2011-04-01

    The mission of the Encyclopedia of DNA Elements (ENCODE) Project is to enable the scientific and medical communities to interpret the human genome sequence and apply it to understand human biology and improve health. The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns. In the process, standards to ensure high-quality data have been implemented, and novel algorithms have been developed to facilitate analysis. Data and derived results are made available through a freely accessible database. Here we provide an overview of the project and the resources it is generating and illustrate the application of ENCODE data to interpret the human genome.

  11. Hybrid polypeptides having cellobiohydrolase activity and polynucleotides encoding same

    SciTech Connect

    Liu, Ye; Shaghasi, Tarana

    2016-11-01

    The present invention provides hybrid polypeptides having cellobiohydrolase activity. The present invention also provides polynucleotides encoding the hybrid polypeptides; nucleic acid constructs, vectors and host cells comprising the polynucleotides; and processes of using the hybrid polypeptides.

  12. Polypeptides having cellulolytic enhancing activity and polynucleotides encoding same

    SciTech Connect

    Zhang, Yu; Duan, Junxin; Tang, Lan; Wu, Wenping

    2015-06-09

    Provided are isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. Also provided are nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  13. A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

    PubMed Central

    2011-01-01

    The mission of the Encyclopedia of DNA Elements (ENCODE) Project is to enable the scientific and medical communities to interpret the human genome sequence and apply it to understand human biology and improve health. The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns. In the process, standards to ensure high-quality data have been implemented, and novel algorithms have been developed to facilitate analysis. Data and derived results are made available through a freely accessible database. Here we provide an overview of the project and the resources it is generating and illustrate the application of ENCODE data to interpret the human genome. PMID:21526222

  14. Noise and neuronal populations conspire to encode simple waveforms reliably

    NASA Technical Reports Server (NTRS)

    Parnas, B. R.

    1996-01-01

    Sensory systems rely on populations of neurons to encode information transduced at the periphery into meaningful patterns of neuronal population activity. This transduction occurs in the presence of intrinsic neuronal noise. This is fortunate. The presence of noise allows more reliable encoding of the temporal structure present in the stimulus than would be possible in a noise-free environment. Simulations with a parallel model of signal processing at the auditory periphery have been used to explore the effects of noise and a neuronal population on the encoding of signal information. The results show that, for a given set of neuronal modeling parameters and stimulus amplitude, there is an optimal amount of noise for stimulus encoding with maximum fidelity.

  15. Universal Quantum Computing with Arbitrary Continuous-Variable Encoding.

    PubMed

    Lau, Hoi-Kwan; Plenio, Martin B

    2016-09-02

    Implementing a qubit quantum computer in continuous-variable systems conventionally requires the engineering of specific interactions according to the encoding basis states. In this work, we present a unified formalism to conduct universal quantum computation with a fixed set of operations but arbitrary encoding. By storing a qubit in the parity of two or four qumodes, all computing processes can be implemented by basis state preparations, continuous-variable exponential-swap operations, and swap tests. Our formalism inherits the advantages that the quantum information is decoupled from collective noise, and logical qubits with different encodings can be brought to interact without decoding. We also propose a possible implementation of the required operations by using interactions that are available in a variety of continuous-variable systems. Our work separates the "hardware" problem of engineering quantum-computing-universal interactions, from the "software" problem of designing encodings for specific purposes. The development of quantum computer architecture could hence be simplified.

  16. Isolated menthone reductase and nucleic acid molecules encoding same

    DOEpatents

    Croteau, Rodney B; Davis, Edward M; Ringer, Kerry L

    2013-04-23

    The present invention provides isolated menthone reductase proteins, isolated nucleic acid molecules encoding menthone reductase proteins, methods for expressing and isolating menthone reductase proteins, and transgenic plants expressing elevated levels of menthone reductase protein.

  17. Rearrangement and Grouping of Data Bits for Efficient Lossless Encoding

    NASA Astrophysics Data System (ADS)

    B, Ajitha Shenoy K.; Ajith, Meghana; Mantoor, Vinayak M.

    2017-01-01

    This paper describes the efficacy of rearranging and grouping of data bits. Lossless encoding techniques like Huffman Coding, Arithmetic Coding etc., works well on data which contains redundant information. The idea behind these techniques is to encode more frequently occurring symbols with less number of bits and more seldom occurring symbols with more number of bits. Most of the methods fail if there is a non-redundant data. We propose a method to re arrange and group data bits there by making the data redundant and then different lossless encoding techniques can be applied. In this paper we propose three different methods to rearrange the data bits, and efficient way of grouping them. This is first such attempt. We also justify the need of rearranging and grouping data bits for efficient lossless encoding.

  18. Enzymatic characterization of a lysin encoded by bacteriophage EL.

    PubMed

    Tafoya, Diana A; Hildenbrand, Zacariah L; Herrera, Nadia; Molugu, Sudheer K; Mesyanzhinov, Vadim V; Miroshnikov, Konstantin A; Bernal, Ricardo A

    2013-04-01

    The bacteriophage EL is a virus that specifically attacks the human pathogen Pseudomonas aeruginosa. This phage carries a large genome that encodes for its own chaperonin which presumably facilitates the proper folding of phage proteins independently of the host chaperonin system. EL also encodes a lysin enzyme, a critical component of the lytic cycle that is responsible for digesting the peptidoglycan layer of the host cell wall. Previously, this lysin was believed to be a substrate of the chaperonin encoded by phage EL. In order to characterize the activity of the EL lysin, and to determine whether lysin activity is contingent on chaperonin-mediated folding, a series of peptidoglycan hydrolysis activity assays were performed. Results indicate that the EL-encoded lysin has similar enzymatic activity to that of the Gallus gallus lysozyme and that the EL lysin folds into a functional enzyme in the absence of phage chaperonin and should not be considered a substrate.

  19. Microfabrication of encoded microparticle array for multiplexed DNA hybridization detection.

    PubMed

    Zhi, Zheng-Liang; Morita, Yasutaka; Yamamura, Shouhei; Tamiya, Eiichi

    2005-05-21

    A strategy for the high-sensitivity, high-selectivity, and multiplexed detection of oligonucleotide hybridizations has been developed with an encoded Ni microparticle random array that was manufactured by a "top-down" approach using micromachining and microfabrication techniques.

  20. Imagining another context during encoding offsets context-dependent forgetting.

    PubMed

    Masicampo, E J; Sahakyan, Lili

    2014-11-01

    We tested whether imagining another context during encoding would offset context-dependent forgetting. All participants studied a list of words in Context A. Participants who remained in Context A during the test recalled more than participants who were tested in another context (Context B), demonstrating the standard context-dependent forgetting effect (e.g., Smith & Vela, 2001). Importantly, some participants imagined another mental context during encoding. Some of these participants imagined Context B during encoding, and when they were later tested in Context B or even in a completely new Context C, they did not show forgetting, confirming our predictions. Other participants imagined a new context during encoding simply by transforming the current context (i.e., by imagining that it was snowing in the room), and this likewise counteracted context-dependent forgetting. These data suggest a moderator of context-dependent forgetting. When the context surrounding a memory is largely mentally generated, context-dependent forgetting is eliminated.

  1. Polypeptides having endoglucanase activity and polynucleotides encoding same

    DOEpatents

    Spodsberg, Nikolaj

    2015-02-10

    The present invention relates to isolated polypeptides having endoglucanase activity and polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  2. Polypeptides having endoglucanase activity and polynucleotides encoding same

    DOEpatents

    Spodsberg, Nikolaj

    2015-11-17

    The present invention relates to isolated polypeptides having endoglucanase activity and polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  3. Polypeptides having xylanase activity and polynucleotides encoding same

    DOEpatents

    Spodsberg, Nikolaj

    2015-10-27

    The present invention relates to isolated polypeptides having xylanase activity and polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  4. Polypeptides having cellobiohydrolase activity and polynucleotides encoding same

    DOEpatents

    Spodsberg, Nikolaj

    2015-11-17

    The present invention relates to isolated polypeptides having cellobiohydrolase activity and polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  5. Differential encoding for multiple amplitude and phase shift keying systems

    NASA Technical Reports Server (NTRS)

    Weber, W. J., III

    1978-01-01

    Because of the symmetry in most two-dimensional signal constellations, ambiguities exist at the receiver as to the exact phase orientation of the received signal set. In PSK systems, this ambiguity is resolved by the use of differential encoding. This paper presents differential encoding techniques which can be used with a variety of symmetric signal sets to remove their phase ambiguity. While not proven to be optimum, the techniques do have low performance penalties relative to the uncoded performance. The key to reducing the performance penalty is to use the minimum amount of differential encoding necessary to resolve the ambiguity. Examples of encoding techniques for several common signal constellations are given, including their performance penalties.

  6. Universal Quantum Computing with Arbitrary Continuous-Variable Encoding

    NASA Astrophysics Data System (ADS)

    Lau, Hoi-Kwan; Plenio, Martin B.

    2016-09-01

    Implementing a qubit quantum computer in continuous-variable systems conventionally requires the engineering of specific interactions according to the encoding basis states. In this work, we present a unified formalism to conduct universal quantum computation with a fixed set of operations but arbitrary encoding. By storing a qubit in the parity of two or four qumodes, all computing processes can be implemented by basis state preparations, continuous-variable exponential-swap operations, and swap tests. Our formalism inherits the advantages that the quantum information is decoupled from collective noise, and logical qubits with different encodings can be brought to interact without decoding. We also propose a possible implementation of the required operations by using interactions that are available in a variety of continuous-variable systems. Our work separates the "hardware" problem of engineering quantum-computing-universal interactions, from the "software" problem of designing encodings for specific purposes. The development of quantum computer architecture could hence be simplified.

  7. Polypeptides having cellobiohydrolase activity and polynucleotides encoding same

    DOEpatents

    Spodsberg, Nikolaj

    2015-03-31

    The present invention relates to isolated polypeptides having cellobiohydrolase activity and polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  8. Multifunctional encoded particles for high-throughput biomolecule analysis.

    PubMed

    Pregibon, Daniel C; Toner, Mehmet; Doyle, Patrick S

    2007-03-09

    High-throughput screening for genetic analysis, combinatorial chemistry, and clinical diagnostics benefits from multiplexing, which allows for the simultaneous assay of several analytes but necessitates an encoding scheme for molecular identification. Current approaches for multiplexed analysis involve complicated or expensive processes for encoding, functionalizing, or decoding active substrates (particles or surfaces) and often yield a very limited number of analyte-specific codes. We present a method based on continuous-flow lithography that combines particle synthesis and encoding and probe incorporation into a single process to generate multifunctional particles bearing over a million unique codes. By using such particles, we demonstrate a multiplexed, single-fluorescence detection of DNA oligomers with encoded particle libraries that can be scanned rapidly in a flow-through microfluidic channel. Furthermore, we demonstrate with high specificity the same multiplexed detection using individual multiprobe particles.

  9. Polypeptides having cellobiohydrolase activitiy and polynucleotides encoding same

    SciTech Connect

    Liu, Ye; Tang, Lan; Duan, Junxin

    2015-12-15

    The present invention provides isolated polypeptides having cellobiohydrolase activity and isolated polynucleotides encoding the polypeptides. The invention also provides nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  10. Polypeptides having endoglucanase activity and polynucleotides encoding same

    DOEpatents

    Spodsberg, Nikolaj

    2014-07-15

    The present invention relates to isolated polypeptides having endoglucanase activity and polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  11. Polypeptides having endoglucanse activity and polynucleotides encoding same

    DOEpatents

    Spodsberg, Nikolaj

    2014-07-08

    The present invention relates to isolated polypeptides having endoglucanase activity and polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  12. Polypeptides having cellobiohydrolase activity and polynucleotides encoding same

    DOEpatents

    Spodsberg, Nikolaj

    2014-06-24

    The present invention relates to isolated polypeptides having cellobiohydrolase activity and polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  13. Polypeptides having cellobiohydrolase activity and polynucleotides encoding same

    DOEpatents

    Spodsberg, Nikolaj

    2014-07-15

    The present invention relates to isolated polypeptides having cellobiohydrolase activity and polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  14. Polypeptides having xylanase activity and polynucleotides encoding same

    DOEpatents

    Spodsberg, Nikolaj

    2014-06-24

    The present invention relates to isolated polypeptides having xylanase activity and polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  15. Polypeptides having cellobiohydrolase activity and polynucleotides encoding same

    DOEpatents

    Spodsberg, Nikolaj

    2014-07-08

    The present invention relates to isolated polypeptides having cellobiohydrolase activity and polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  16. Error correction of photoelectric rotary and angle encoder

    NASA Astrophysics Data System (ADS)

    Zhou, Liang; She, Wen-ji; Huang, Jing

    2014-02-01

    The photoelectric rotary and angle encoder is a digital angle measuring device, which is integrated with optics, mechanics and electrics. Because of its simple structure, high resolution, and high accuracy, it has been widely used in precision measurement of angle, digital control and digital display system. With the needs of fast tracking and accurate orientation on the horizon and air targets, putting forward higher requirements on accuracy of angle measurement and resolution of photoelectric rotary and angle encoder. Influences of manufacturing, electronics segmentation, optical and mechanical structure and eccentric shaft to photoelectric encoder precision and reducing methods are introduced. Focusing on the eccentricity error, building up an error correction model to improve the resolution of angle encoder and the model was verified by test.

  17. Polypeptides having xylanase activity and polynucleotides encoding same

    DOEpatents

    Spodsberg, Nikolaj

    2014-10-14

    The present invention relates to isolated polypeptides having xylanase activity and polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  18. Polypeptides having xylanase activity and polynucleotides encoding same

    DOEpatents

    Spodsberg, Nikolaj

    2015-08-18

    The present invention relates to isolated polypeptides having xylanase activity and polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  19. Polypeptides having endoglucanase activity and polynucleotides encoding same

    DOEpatents

    Liu, Ye; Duan, Junxin; Tang, Lan

    2015-09-22

    The present invention provides isolated polypeptides having endoglucanase activity and isolated polynucleotides encoding the polypeptides. The invention also provides nucleic acid constructs, vectors, and host cell comprising the polynucleotides as well as methods of producing and using the polypeptides.

  20. Polypeptides having cellobiohydrolase activity and polynucleotides encoding same

    SciTech Connect

    Spodsberg, Nikolaj

    2016-12-13

    The present invention relates to isolated polypeptides having cellobiohydrolase activity and polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  1. Data Encoding using Periodic Nano-Optical Features

    NASA Astrophysics Data System (ADS)

    Vosoogh-Grayli, Siamack

    Successful trials have been made through a designed algorithm to quantize, compress and optically encode unsigned 8 bit integer values in the form of images using Nano optical features. The periodicity of the Nano-scale features (Nano-gratings) have been designed and investigated both theoretically and experimentally to create distinct states of variation (three on states and one off state). The use of easy to manufacture and machine readable encoded data in secured authentication media has been employed previously in bar-codes for bi-state (binary) models and in color barcodes for multiple state models. This work has focused on implementing 4 states of variation for unit information through periodic Nano-optical structures that separate an incident wavelength into distinct colors (variation states) in order to create an encoding system. Compared to barcodes and magnetic stripes in secured finite length storage media the proposed system encodes and stores more data. The benefits of multiple states of variation in an encoding unit are 1) increased numerically representable range 2) increased storage density and 3) decreased number of typical set elements for any ergodic or semi-ergodic source that emits these encoding units. A thorough investigation has targeted the effects of the use of multi-varied state Nano-optical features on data storage density and consequent data transmission rates. The results show that use of Nano-optical features for encoding data yields a data storage density of circa 800 Kbits/in2 via the implementation of commercially available high resolution flatbed scanner systems for readout. Such storage density is far greater than commercial finite length secured storage media such as Barcode family with maximum practical density of 1kbits/in2 and highest density magnetic stripe cards with maximum density circa 3 Kbits/in2. The numerically representable range of the proposed encoding unit for 4 states of variation is [0 255]. The number of

  2. Dual-pharmacophore DNA-encoded chemical libraries.

    PubMed

    Scheuermann, Jörg; Neri, Dario

    2015-06-01

    In contrast to single-pharmacophore DNA-encoded libraries, where only one chemical moiety is linked to DNA, dual-pharmacophore DNA-encoded chemical libraries feature the display of two independent small-molecules in close proximity. This, in principle, allows to explore adjacent epitopes on a pharmaceutical target of choice and hence the discovery of simultaneously binding pairs of fragments, by virtue of the chelate effect.

  3. Security enhanced BioEncoding for protecting iris codes

    NASA Astrophysics Data System (ADS)

    Ouda, Osama; Tsumura, Norimichi; Nakaguchi, Toshiya

    2011-06-01

    Improving the security of biometric template protection techniques is a key prerequisite for the widespread deployment of biometric technologies. BioEncoding is a recently proposed template protection scheme, based on the concept of cancelable biometrics, for protecting biometric templates represented as binary strings such as iris codes. The main advantage of BioEncoding over other template protection schemes is that it does not require user-specific keys and/or tokens during verification. Besides, it satisfies all the requirements of the cancelable biometrics construct without deteriorating the matching accuracy. However, although it has been shown that BioEncoding is secure enough against simple brute-force search attacks, the security of BioEncoded templates against more smart attacks, such as record multiplicity attacks, has not been sufficiently investigated. In this paper, a rigorous security analysis of BioEncoding is presented. Firstly, resistance of BioEncoded templates against brute-force attacks is revisited thoroughly. Secondly, we show that although the cancelable transformation employed in BioEncoding might be non-invertible for a single protected template, the original iris code could be inverted by correlating several templates used in different applications but created from the same iris. Accordingly, we propose an important modification to the BioEncoding transformation process in order to hinder attackers from exploiting this type of attacks. The effectiveness of adopting the suggested modification is validated and its impact on the matching accuracy is investigated empirically using CASIA-IrisV3-Interval dataset. Experimental results confirm the efficacy of the proposed approach and show that it preserves the matching accuracy of the unprotected iris recognition system.

  4. High-Resolution Optoelectronic Shaft-Angle Encoder

    NASA Technical Reports Server (NTRS)

    Leviton, Douglas B.

    1994-01-01

    Improved optoelectronic encoder measures absolute angle to which shaft has been rotated. Costs little more than older, less capable encoders do, yet measures absolute angles at high resolution and does not lose absolute-angle data because generates those data anew with each reading at up to 1,000 times per second. It accumulates increments to measure total angular interval through which shaft has been turned (including unlimited number of complete turns), as long as power remains on.

  5. Junk DNA-Encoded Antigens in Ovarian Cancer

    DTIC Science & Technology

    2014-10-01

    AWARD NUMBER: W81XWH-13-1-0359 TITLE: Junk DNA -Encoded Antigens in Ovarian Cancer PRINCIPAL INVESTIGATOR: Kathleen H. Burns, M.D., Ph.D...SUBTITLE Junk DNA -Encoded Antigens in Ovarian Cancer 5a. CONTRACT NUMBER 5b. GRANT NUMBER W81XWH-13-1-0359 5c. PROGRAM ELEMENT NUMBER 6. AUTHOR...that comprises unique, protein-coding exons. These exclude studies of highly repetitive DNA sequences despite the fact that this dimension of our

  6. 20 years of DNA-encoded chemical libraries.

    PubMed

    Mannocci, Luca; Leimbacher, Markus; Wichert, Moreno; Scheuermann, Jörg; Neri, Dario

    2011-12-28

    The identification of specific binding molecules is a central problem in chemistry, biology and medicine. Therefore, technologies, which facilitate ligand discovery, may substantially contribute to a better understanding of biological processes and to drug discovery. DNA-encoded chemical libraries represent a new inexpensive tool for the fast and efficient identification of ligands to target proteins of choice. Such libraries consist of collections of organic molecules, covalently linked to a unique DNA tag serving as an amplifiable identification bar code. DNA-encoding enables the in vitro selection of ligands by affinity capture at sub-picomolar concentrations on virtually any target protein of interest, in analogy to established selection methodologies like antibody phage display. Multiple strategies have been investigated by several academic and industrial laboratories for the construction of DNA-encoded chemical libraries comprising up to millions of DNA-encoded compounds. The implementation of next generation high-throughput sequencing enabled the rapid identification of binding molecules from DNA-encoded libraries of unprecedented size. This article reviews the development of DNA-encoded library technology and its evolution into a novel drug discovery tool, commenting on challenges, perspectives and opportunities for the different experimental approaches.

  7. Low Complexity HEVC Encoder for Visual Sensor Networks

    PubMed Central

    Pan, Zhaoqing; Chen, Liming; Sun, Xingming

    2015-01-01

    Visual sensor networks (VSNs) can be widely applied in security surveillance, environmental monitoring, smart rooms, etc. However, with the increased number of camera nodes in VSNs, the volume of the visual information data increases significantly, which becomes a challenge for storage, processing and transmitting the visual data. The state-of-the-art video compression standard, high efficiency video coding (HEVC), can effectively compress the raw visual data, while the higher compression rate comes at the cost of heavy computational complexity. Hence, reducing the encoding complexity becomes vital for the HEVC encoder to be used in VSNs. In this paper, we propose a fast coding unit (CU) depth decision method to reduce the encoding complexity of the HEVC encoder for VSNs. Firstly, the content property of the CU is analyzed. Then, an early CU depth decision method and a low complexity distortion calculation method are proposed for the CUs with homogenous content. Experimental results show that the proposed method achieves 71.91% on average encoding time savings for the HEVC encoder for VSNs. PMID:26633415

  8. Secret key rates for an encoded quantum repeater

    NASA Astrophysics Data System (ADS)

    Bratzik, Sylvia; Kampermann, Hermann; Bruß, Dagmar

    2014-03-01

    We investigate secret key rates for the quantum repeater using encoding [L. Jiang et al., Phys. Rev. A 79, 032325 (2009), 10.1103/PhysRevA.79.032325] and compare them to the standard repeater scheme by Briegel, Dür, Cirac, and Zoller. The former scheme has the advantage of a minimal consumption of classical communication. We analyze the trade-off in the secret key rate between the communication time and the required resources. For this purpose we introduce an error model for the repeater using encoding which allows for input Bell states with a fidelity smaller than one, in contrast to the model given by L. Jiang et al. [Phys. Rev. A 79, 032325 (2009), 10.1103/PhysRevA.79.032325]. We show that one can correct additional errors in the encoded connection procedure of this repeater and develop a suitable decoding algorithm. Furthermore, we derive the rate of producing entangled pairs for the quantum repeater using encoding and give the minimal parameter values (gate quality and initial fidelity) for establishing a nonzero secret key. We find that the generic quantum repeater is optimal regarding the secret key rate per memory per second and show that the encoded quantum repeater using the simple three-qubit repetition code can even have an advantage with respect to the resources compared to other recent quantum repeater schemes with encoding.

  9. Low Complexity HEVC Encoder for Visual Sensor Networks.

    PubMed

    Pan, Zhaoqing; Chen, Liming; Sun, Xingming

    2015-12-02

    Visual sensor networks (VSNs) can be widely applied in security surveillance, environmental monitoring, smart rooms, etc. However, with the increased number of camera nodes in VSNs, the volume of the visual information data increases significantly, which becomes a challenge for storage, processing and transmitting the visual data. The state-of-the-art video compression standard, high efficiency video coding (HEVC), can effectively compress the raw visual data, while the higher compression rate comes at the cost of heavy computational complexity. Hence, reducing the encoding complexity becomes vital for the HEVC encoder to be used in VSNs. In this paper, we propose a fast coding unit (CU) depth decision method to reduce the encoding complexity of the HEVC encoder for VSNs. Firstly, the content property of the CU is analyzed. Then, an early CU depth decision method and a low complexity distortion calculation method are proposed for the CUs with homogenous content. Experimental results show that the proposed method achieves 71.91% on average encoding time savings for the HEVC encoder for VSNs.

  10. Imaging systems based on the encoding of optical coherence functions.

    PubMed

    James, J Christopher; Bennett, Gisele Welch; Rhodes, William T

    2005-09-01

    An imaging scheme is described that is based on the transmission of image-forming information encoded within optical coherence functions. The scheme makes use of dynamic random-valued encoding-decoding masks placed in the input-output planes of any linear optical system. The mask transmittance functions are complex conjugates of each other, as opposed to a similar coherence encoding scheme proposed earlier by two of this paper's authors that used identical masks. [Rhodes and Welch, in Euro-American Workshop on Optoelectronic Information Processing, SPIE Critical Review Series (SPIE, 1999), Vol. CR74, p. 1]. General analyses of the two coherence encoding schemes are performed by using the more general mutual coherence function as opposed to the mutual intensity function used in the earlier scheme. The capabilities and limitations of both encoding schemes are discussed by using simple examples that combine the encoding-decoding masks with free-space propagation, passage through a four-f system, and a single-lens imaging system.

  11. Efficient Encoding and Rendering of Time-Varying Volume Data

    NASA Technical Reports Server (NTRS)

    Ma, Kwan-Liu; Smith, Diann; Shih, Ming-Yun; Shen, Han-Wei

    1998-01-01

    Visualization of time-varying volumetric data sets, which may be obtained from numerical simulations or sensing instruments, provides scientists insights into the detailed dynamics of the phenomenon under study. This paper describes a coherent solution based on quantization, coupled with octree and difference encoding for visualizing time-varying volumetric data. Quantization is used to attain voxel-level compression and may have a significant influence on the performance of the subsequent encoding and visualization steps. Octree encoding is used for spatial domain compression, and difference encoding for temporal domain compression. In essence, neighboring voxels may be fused into macro voxels if they have similar values, and subtrees at consecutive time steps may be merged if they are identical. The software rendering process is tailored according to the tree structures and the volume visualization process. With the tree representation, selective rendering may be performed very efficiently. Additionally, the I/O costs are reduced. With these combined savings, a higher level of user interactivity is achieved. We have studied a variety of time-varying volume datasets, performed encoding based on data statistics, and optimized the rendering calculations wherever possible. Preliminary tests on workstations have shown in many cases tremendous reduction by as high as 90% in both storage space and inter-frame delay.

  12. Structural and Functional Diversity of Nairovirus-Encoded Nucleoproteins

    PubMed Central

    Wang, Wenming; Liu, Xiang; Wang, Xu; Dong, Hui; Ma, Chao; Wang, Jingmin; Liu, Baocheng; Mao, Yonghong; Wang, Ying; Li, Ting

    2015-01-01

    ABSTRACT The nairoviruses include assorted tick-borne bunyaviruses that are emerging as causative agents of infectious diseases among humans and animals. As negative-sense single-stranded RNA (−ssRNA) viruses, nairoviruses encode nucleoprotein (NP) that encapsidates the genomic RNA and further forms ribonucleoprotein (RNP) complex with viral RNA-dependent RNA polymerase (RdRp). We previously revealed that the monomeric NP encoded by Crimean-Congo hemorrhagic fever virus (CCHFV) presents a racket-shaped structure and shows unusual DNA-specific endonuclease activity. To examine the structural and biological variation of nairovirus-encoded NPs, here, we systematically solved the crystal structures of NPs encoded by various nairoviruses, including Hazara virus (HAZV), Kupe virus (KUPV), and Erve virus (ERVEV). Combined with biochemical analysis, our results generate a clearer picture to aid in the understanding of the functional diversity of nairovirus-encoded NPs and the formation of nairovirus RNPs. IMPORTANCE Nairoviruses comprise several tick-borne bunyaviruses that are emerging as causative agents of infectious diseases among humans and animals; however, little is known of the nairovirus genome assembly and transcription mechanisms. Based on the previous study of CCHFV NP reported by different research groups, we systematically investigate here the structural and functional diversity among three different nairoviruses. This work provides important information on nairovirus nucleoprotein function and the formation of RNPs. PMID:26246561

  13. Encoding of configural regularity in the human visual system.

    PubMed

    Kubilius, Jonas; Wagemans, Johan; Op de Beeck, Hans P

    2014-08-13

    The visual system is very efficient in encoding stimulus properties by utilizing available regularities in the inputs. To explore the underlying encoding strategies during visual information processing, we presented participants with two-line configurations that varied in the amount of configural regularity (or degrees of freedom in the relative positioning of the two lines) in a fMRI experiment. Configural regularity ranged from a generic configuration to stimuli resembling an "L" (i.e., a right-angle L-junction), a "T" (i.e., a right-angle midpoint T-junction), or a "+",-the latter being the most regular stimulus. We found that the response strength in the shape-selective lateral occipital area was consistently lower for a higher degree of regularity in the stimuli. In the second experiment, using multivoxel pattern analysis, we further show that regularity is encoded in terms of the fMRI signal strength but not in the distributed pattern of responses. Finally, we found that the results of these experiments could not be accounted for by low-level stimulus properties and are distinct from norm-based encoding. Our results suggest that regularity plays an important role in stimulus encoding in the ventral visual processing stream.

  14. The new INRIM rotating encoder angle comparator (REAC)

    NASA Astrophysics Data System (ADS)

    Pisani, Marco; Astrua, Milena

    2017-04-01

    A novel angle comparator has been built and tested at INRIM. The device is based on a double air bearing structure embedding a continuously rotating encoder, which is read by two heads: one fixed to the base of the comparator and a second fixed to the upper moving part of the comparator. The phase measurement between the two heads’ signals is proportional to the relative angle suspended between them (and, therefore, the angle between the base and the upper, movable part of the comparator). The advantage of this solution is to reduce the encoder graduation errors and to cancel the cyclic errors due to the interpolation of the encoder lines. By using only two pairs of reading heads, we have achieved an intrinsic accuracy of  ±0.04″ (rectangular distribution) that can be reduced through self-calibration. The residual cyclic errors have shown to be less than 0.01″ peak-to-peak. The random fluctuations are less than 0.01″ rms on a 100 s time interval. A further advantage of the rotating encoder is the intrinsic knowledge of the absolute position without the need of a zeroing procedure. Construction details of the rotating encoder angle comparator (REAC), characterization tests, and examples of practical use are given.

  15. Human Genomic Signatures of Brain Oscillations During Memory Encoding.

    PubMed

    Berto, Stefano; Wang, Guang-Zhong; Germi, James; Lega, Bradley C; Konopka, Genevieve

    2017-04-05

    Memory encoding is an essential step for all learning. However, the genetic and molecular mechanisms underlying human memory encoding remain poorly understood, and how this molecular framework permits the emergence of specific patterns of brain oscillations observed during mnemonic processing is unknown. Here, we directly compare intracranial electroencephalography recordings from the neocortex in individuals performing an episodic memory task with human gene expression from the same areas. We identify genes correlated with oscillatory memory effects across 6 frequency bands. These genes are enriched for autism-related genes and have preferential expression in neurons, in particular genes encoding synaptic proteins and ion channels, supporting the idea that the genes regulating voltage gradients are involved in the modulation of oscillatory patterns during successful memory encoding across brain areas. Memory-related genes are distinct from those correlated with other forms of cognitive processing and resting state fMRI. These data are the first to identify correlations between gene expression and active human brain states as well as provide a molecular window into memory encoding oscillations in the human brain.

  16. Early remodeling of the neocortex upon episodic memory encoding.

    PubMed

    Bero, Adam W; Meng, Jia; Cho, Sukhee; Shen, Abra H; Canter, Rebecca G; Ericsson, Maria; Tsai, Li-Huei

    2014-08-12

    Understanding the mechanisms by which long-term memories are formed and stored in the brain represents a central aim of neuroscience. Prevailing theory suggests that long-term memory encoding involves early plasticity within hippocampal circuits, whereas reorganization of the neocortex is thought to occur weeks to months later to subserve remote memory storage. Here we report that long-term memory encoding can elicit early transcriptional, structural, and functional remodeling of the neocortex. Parallel studies using genome-wide RNA sequencing, ultrastructural imaging, and whole-cell recording in wild-type mice suggest that contextual fear conditioning initiates a transcriptional program in the medial prefrontal cortex (mPFC) that is accompanied by rapid expansion of the synaptic active zone and postsynaptic density, enhanced dendritic spine plasticity, and increased synaptic efficacy. To address the real-time contribution of the mPFC to long-term memory encoding, we performed temporally precise optogenetic inhibition of excitatory mPFC neurons during contextual fear conditioning. Using this approach, we found that real-time inhibition of the mPFC inhibited activation of the entorhinal-hippocampal circuit and impaired the formation of long-term associative memory. These findings suggest that encoding of long-term episodic memory is associated with early remodeling of neocortical circuits, identify the prefrontal cortex as a critical regulator of encoding-induced hippocampal activation and long-term memory formation, and have important implications for understanding memory processing in healthy and diseased brain states.

  17. Color encoding for gamut extension and bit-depth extension

    NASA Astrophysics Data System (ADS)

    Zeng, Huanzhao

    2005-02-01

    Monitor oriented RGB color spaces (e.g. sRGB) are widely applied for digital image representation for the simplicity in displaying images on monitor displays. However, the physical gamut limits its ability to encode colors accurately for color images that are not limited to the display RGB gamut. To extend the encoding gamut, non-physical RGB primaries may be used to define the color space, or the RGB tone ranges may be extended beyond the physical range. An out-of-gamut color has at least one of the R, G, and B channels that are smaller than 0 or higher than 100%. Instead of using wide-gamut RGB primaries for gamut expansion, we may extend the tone ranges to expand the encoding gamut. Negative tone values and tone values over 100% are allowed. Methods to efficiently and accurately encode out-of-gamut colors are discussed in this paper. Interpretation bits are added to interpret the range of color values or to encode color values with a higher bit-depth. The interpretation bits of R, G, and B primaries can be packed and stored in an alpha channel in some image formats (e.g. TIFF) or stored in a data tag (e.g. in JEPG format). If a color image does not have colors that are out of a regular RGB gamut, a regular program (e.g. Photoshop) is able to manipulate the data correctly.

  18. Robust encoding of scene anticipation during human spatial navigation

    PubMed Central

    Shikauchi, Yumi; Ishii, Shin

    2016-01-01

    In a familiar city, people can recall scene views (e.g., a particular street corner scene) they could encounter again in the future. Complex objects with multiple features are represented by multiple neural units (channels) in the brain, but when anticipating a scene view, the kind of feature that is assigned to a specific channel is unknown. Here, we studied neural encoding of scene view anticipation during spatial navigation, using a novel data-driven analysis to evaluate encoding channels. Our encoding models, based on functional magnetic resonance imaging (fMRI) activity, provided channel error correction via redundant channel assignments that reflected the navigation environment. We also found that our encoding models strongly reflected brain activity in the inferior parietal gyrus and precuneus, and that details of future scenes were locally represented in the superior prefrontal gyrus and temporal pole. Furthermore, a decoder associated with the encoding models accurately predicted future scene views in both passive and active navigation. These results suggest that the human brain uses scene anticipation, mediated especially by parietal and medial prefrontal cortical areas, as a robust and effective navigation processing. PMID:27874089

  19. Degradation of Cortical Representations during Encoding following Sleep Deprivation.

    PubMed

    Poh, Jia-Hou; Chee, Michael W L

    2017-02-01

    A night of total sleep deprivation (TSD) reduces task-related activation of fronto-parietal and higher visual cortical areas. As this reduction in activation corresponds to impaired attention and perceptual processing, it might also be associated with poorer memory encoding. Related animal work has established that cortical columns stochastically enter an 'off' state in sleep deprivation, leading to predictions that neural representations are less stable and distinctive following TSD. To test these predictions participants incidentally encoded scene images while undergoing fMRI, either during rested wakefulness (RW) or after TSD. In scene-selective PPA, TSD reduced stability of neural representations across repetition. This was accompanied by poorer subsequent memory. Greater representational stability benefitted subsequent memory in RW but not TSD. Even for items subsequently recognized, representational distinctiveness was lower in TSD, suggesting that quality of encoding is degraded. Reduced representational stability and distinctiveness are two novel mechanisms by which TSD can contribute to poorer memory formation.

  20. Genetically-encoded biosensors for monitoring cellular stress in bioprocessing.

    PubMed

    Polizzi, Karen M; Kontoravdi, Cleo

    2015-02-01

    With the current wealth of transcriptomic data, it is possible to design genetically-encoded biosensors for the detection of stress responses and apply these to high-throughput bioprocess development and monitoring of cellular health. Such biosensors can sense extrinsic factors such as nutrient or oxygen deprivation and shear stress, as well as intrinsic stress factors like oxidative damage and unfolded protein accumulation. Alongside, there have been developments in biosensing hardware and software applicable to the field of genetically-encoded biosensors in the near future. This review discusses the current state-of-the-art in biosensors for monitoring cultures during biological manufacturing and the future challenges for the field. Connecting the individual achievements into a coherent whole will enable the application of genetically-encoded biosensors in industry.

  1. Subversion of cytokine networks by virally encoded decoy receptors

    PubMed Central

    Epperson, Megan L.; Lee, Chung A.; Fremont, Daved H.

    2012-01-01

    Summary During the course of evolution, viruses have captured or created a diverse array of open reading frames that encode for proteins that serve to evade and sabotage the host innate and adaptive immune responses, which would otherwise lead to their elimination. These viral genomes are some of the best textbooks of immunology ever written. The established arsenal of immunomodulatory proteins encoded by viruses is large and growing and includes specificities for virtually all known inflammatory pathways and targets. The focus of this review is on herpes and poxvirus-encoded cytokine and chemokine binding proteins that serve to undermine the coordination of host immune surveillance. Structural and mechanistic studies of these decoy receptors have provided a wealth of information, not only about viral pathogenesis but also about the inner workings of cytokine signaling networks. PMID:23046131

  2. Fast Coding Unit Encoding Mechanism for Low Complexity Video Coding

    PubMed Central

    Wu, Yueying; Jia, Kebin; Gao, Guandong

    2016-01-01

    In high efficiency video coding (HEVC), coding tree contributes to excellent compression performance. However, coding tree brings extremely high computational complexity. Innovative works for improving coding tree to further reduce encoding time are stated in this paper. A novel low complexity coding tree mechanism is proposed for HEVC fast coding unit (CU) encoding. Firstly, this paper makes an in-depth study of the relationship among CU distribution, quantization parameter (QP) and content change (CC). Secondly, a CU coding tree probability model is proposed for modeling and predicting CU distribution. Eventually, a CU coding tree probability update is proposed, aiming to address probabilistic model distortion problems caused by CC. Experimental results show that the proposed low complexity CU coding tree mechanism significantly reduces encoding time by 27% for lossy coding and 42% for visually lossless coding and lossless coding. The proposed low complexity CU coding tree mechanism devotes to improving coding performance under various application conditions. PMID:26999741

  3. Multiple velocity encoding in the phase of an MRI signal

    NASA Astrophysics Data System (ADS)

    Benitez-Read, E. E.

    2017-01-01

    The measurement of fluid velocity by encoding it in the phase of a magnetic resonance imaging (MRI) signal could allow the discrimination of the stationary spins signals from those of moving spins. This results in a wide variety of applications i.e. in medicine, in order to obtain more than angiograms, blood velocity images of veins, arteries and other vessels without having static tissue perturbing the signal of fluid in motion. The work presented in this paper is a theoretical analysis of some novel methods for multiple fluid velocity encoding in the phase of an MRI signal. These methods are based on a tripolar gradient (TPG) and can be an alternative to the conventional methods based on a bipolar gradient (BPG) and could be more suitable for multiple velocity encoding in the phase of an MRI signal.

  4. Nucleic acids encoding antifungal polypeptides and uses thereof

    DOEpatents

    Altier, Daniel J.; Ellanskaya, I. A.; Gilliam, Jacob T.; Hunter-Cevera, Jennie; Presnail, James K; Schepers, Eric; Simmons, Carl R.; Torok, Tamas; Yalpani, Nasser

    2010-11-02

    Compositions and methods for protecting a plant from a pathogen, particularly a fungal pathogen, are provided. Compositions include an amino acid sequence, and variants and fragments thereof, for an antipathogenic polypeptide that was isolated from a fungal fermentation broth. Nucleic acid molecules that encode the antipathogenic polypeptides of the invention, and antipathogenic domains thereof, are also provided. A method for inducing pathogen resistance in a plant using the nucleotide sequences disclosed herein is further provided. The method comprises introducing into a plant an expression cassette comprising a promoter operably linked to a nucleotide sequence that encodes an antipathogenic polypeptide of the invention. Compositions comprising an antipathogenic polypeptide or a transformed microorganism comprising a nucleic acid of the invention in combination with a carrier and methods of using these compositions to protect a plant from a pathogen are further provided. Transformed plants, plant cells, seeds, and microorganisms comprising a nucleotide sequence that encodes an antipathogenic polypeptide of the invention are also disclosed.

  5. Method and apparatus for two-dimensional absolute optical encoding

    NASA Technical Reports Server (NTRS)

    Leviton, Douglas B. (Inventor)

    2004-01-01

    This invention presents a two-dimensional absolute optical encoder and a method for determining position of an object in accordance with information from the encoder. The encoder of the present invention comprises a scale having a pattern being predetermined to indicate an absolute location on the scale, means for illuminating the scale, means for forming an image of the pattern; and detector means for outputting signals derived from the portion of the image of the pattern which lies within a field of view of the detector means, the field of view defining an image reference coordinate system, and analyzing means, receiving the signals from the detector means, for determining the absolute location of the object. There are two types of scale patterns presented in this invention: grid type and starfield type.

  6. Fast Coding Unit Encoding Mechanism for Low Complexity Video Coding.

    PubMed

    Gao, Yuan; Liu, Pengyu; Wu, Yueying; Jia, Kebin; Gao, Guandong

    2016-01-01

    In high efficiency video coding (HEVC), coding tree contributes to excellent compression performance. However, coding tree brings extremely high computational complexity. Innovative works for improving coding tree to further reduce encoding time are stated in this paper. A novel low complexity coding tree mechanism is proposed for HEVC fast coding unit (CU) encoding. Firstly, this paper makes an in-depth study of the relationship among CU distribution, quantization parameter (QP) and content change (CC). Secondly, a CU coding tree probability model is proposed for modeling and predicting CU distribution. Eventually, a CU coding tree probability update is proposed, aiming to address probabilistic model distortion problems caused by CC. Experimental results show that the proposed low complexity CU coding tree mechanism significantly reduces encoding time by 27% for lossy coding and 42% for visually lossless coding and lossless coding. The proposed low complexity CU coding tree mechanism devotes to improving coding performance under various application conditions.

  7. Encoding, training and retrieval in ferroelectric tunnel junctions

    NASA Astrophysics Data System (ADS)

    Xu, Hanni; Xia, Yidong; Xu, Bo; Yin, Jiang; Yuan, Guoliang; Liu, Zhiguo

    2016-05-01

    Ferroelectric tunnel junctions (FTJs) are quantum nanostructures that have great potential in the hardware basis for future neuromorphic applications. Among recently proposed possibilities, the artificial cognition has high hopes, where encoding, training, memory solidification and retrieval constitute a whole chain that is inseparable. However, it is yet envisioned but experimentally unconfirmed. The poor retention or short-term store of tunneling electroresistance, in particular the intermediate states, is still a key challenge in FTJs. Here we report the encoding, training and retrieval in BaTiO3 FTJs, emulating the key features of information processing in terms of cognitive neuroscience. This is implemented and exemplified through processing characters. Using training inputs that are validated by the evolution of both barrier profile and domain configuration, accurate recalling of encoded characters in the retrieval stage is demonstrated.

  8. Encoding techniques for complex information structures in connectionist systems

    NASA Technical Reports Server (NTRS)

    Barnden, John; Srinivas, Kankanahalli

    1990-01-01

    Two general information encoding techniques called relative position encoding and pattern similarity association are presented. They are claimed to be a convenient basis for the connectionist implementation of complex, short term information processing of the sort needed in common sense reasoning, semantic/pragmatic interpretation of natural language utterances, and other types of high level cognitive processing. The relationships of the techniques to other connectionist information-structuring methods, and also to methods used in computers, are discussed in detail. The rich inter-relationships of these other connectionist and computer methods are also clarified. The particular, simple forms are discussed that the relative position encoding and pattern similarity association techniques take in the author's own connectionist system, called Conposit, in order to clarify some issues and to provide evidence that the techniques are indeed useful in practice.

  9. Learning from number board games: you learn what you encode.

    PubMed

    Laski, Elida V; Siegler, Robert S

    2014-03-01

    We tested the hypothesis that encoding the numerical-spatial relations in a number board game is a key process in promoting learning from playing such games. Experiment 1 used a microgenetic design to examine the effects on learning of the type of counting procedure that children use. As predicted, having kindergartners count-on from their current number on the board while playing a 0-100 number board game facilitated their encoding of the numerical-spatial relations on the game board and improved their number line estimates, numeral identification, and count-on skill. Playing the same game using the standard count-from-1 procedure led to considerably less learning. Experiment 2 demonstrated that comparable improvement in number line estimation does not occur with practice encoding the numerals 1-100 outside of the context of a number board game. The general importance of aligning learning activities and physical materials with desired mental representations is discussed.

  10. Verb inflections in agrammatic aphasia: Encoding of tense features ⋆

    PubMed Central

    Faroqi-Shah, Yasmeen; Thompson, Cynthia K.

    2008-01-01

    Across most languages, verbs produced by agrammatic aphasic individuals are frequently marked by syntactically and semantically inappropriate inflectional affixes, such as Last night, I walking home. As per language production models, verb inflection errors in English agrammatism could arise from three potential sources: encoding the verbs’ morphology based on temporal information at the conceptual level, accessing syntactic well-formedness constraints of verbal morphology, and encoding morphophonological form. We investigate these aspects of encoding verb inflections in agrammatic aphasia. Using three sentence completion experiments, it was demonstrated that production of verb inflections was impaired whenever temporal reference was involved; while morphological complexity and syntactic constraints were less likely to be the source of verb inflection errors in agrammatism. These findings are discussed in relation to current language production models. PMID:18392120

  11. Multiresolutional encoding and decoding in embedded image and video coders

    NASA Astrophysics Data System (ADS)

    Xiong, Zixiang; Kim, Beong-Jo; Pearlman, William A.

    1998-07-01

    We address multiresolutional encoding and decoding within the embedded zerotree wavelet (EZW) framework for both images and video. By varying a resolution parameter, one can obtain decoded images at different resolutions from one single encoded bitstream, which is already rate scalable for EZW coders. Similarly one can decode video sequences at different rates and different spatial and temporal resolutions from one bitstream. Furthermore, a layered bitstream can be generated with multiresolutional encoding, from which the higher resolution layers can be used to increase the spatial/temporal resolution of the images/video obtained from the low resolution layer. In other words, we have achieved full scalability in rate and partial scalability in space and time. This added spatial/temporal scalability is significant for emerging multimedia applications such as fast decoding, image/video database browsing, telemedicine, multipoint video conferencing, and distance learning.

  12. Inline SAW RFID tag using time position and phase encoding.

    PubMed

    Härmä, Sanna; Arthur, Wesley G; Hartmann, Clinton S; Maev, Roman G; Plessky, Victor P

    2008-08-01

    Surface acoustic wave (SAW) radio-frequency identification (RFID) tags are encoded according to partial reflections of an interrogation signal by short metal reflectors. The standard encryption method involves time position encoding that uses time delays of response signals. However, the data capacity of a SAW RFID tag can be significantly enhanced by extracting additional phase information from the tag responses. In this work, we have designed, using FEM-BEM simulations, and fabricated, on 128 degrees -LiNbO3, inline 2.44-GHz SAW RFID tag samples that combine time position and phase encoding. Each reflective echo has 4 possible time positions and a phase of 0 degrees , -90 degrees , -180 degrees , or -270 degrees. This corresponds to 16 different states, i.e., 4 bits of data, per code reflector. In addition to the enhanced data capacity, our samples also exhibit a low loss level of -38 dB for code reflections.

  13. Selection for Genes Encoding Secreted Proteins and Receptors

    NASA Astrophysics Data System (ADS)

    Klein, Robert D.; Gu, Qimin; Goddard, Audrey; Rosenthal, Arnon

    1996-07-01

    Extracellular proteins play an essential role in the formation, differentiation, and maintenance of multicellular organisms. Despite that, the systematic identification of genes encoding these proteins has not been possible. We describe here a highly efficient method to isolate genes encoding secreted and membrane-bound proteins by using a single-step selection in yeast. Application of this method, termed signal peptide selection, to various tissues yielded 559 clones that appear to encode known or novel extracellular proteins. These include members of the transforming growth factor and epidermal growth factor protein families, endocrine hormones, tyrosine kinase receptors, serine/threonine kinase receptors, seven transmembrane receptors, cell adhesion molecules, extracellular matrix proteins, plasma proteins, and ion channels. The eventual identification of most, or all, extracellular signaling molecules will advance our understanding of fundamental biological processes and our ability to intervene in disease states.

  14. Hippocampal-prefrontal input supports spatial encoding in working memory.

    PubMed

    Spellman, Timothy; Rigotti, Mattia; Ahmari, Susanne E; Fusi, Stefano; Gogos, Joseph A; Gordon, Joshua A

    2015-06-18

    Spatial working memory, the caching of behaviourally relevant spatial cues on a timescale of seconds, is a fundamental constituent of cognition. Although the prefrontal cortex and hippocampus are known to contribute jointly to successful spatial working memory, the anatomical pathway and temporal window for the interaction of these structures critical to spatial working memory has not yet been established. Here we find that direct hippocampal-prefrontal afferents are critical for encoding, but not for maintenance or retrieval, of spatial cues in mice. These cues are represented by the activity of individual prefrontal units in a manner that is dependent on hippocampal input only during the cue-encoding phase of a spatial working memory task. Successful encoding of these cues appears to be mediated by gamma-frequency synchrony between the two structures. These findings indicate a critical role for the direct hippocampal-prefrontal afferent pathway in the continuous updating of task-related spatial information during spatial working memory.

  15. Isolated nucleic acids encoding antipathogenic polypeptides and uses thereof

    DOEpatents

    Altier, Daniel J.; Crane, Virginia C.; Ellanskaya, Irina; Ellanskaya, Natalia; Gilliam, Jacob T.; Hunter-Cevera, Jennie; Presnail, James K.; Schepers, Eric J.; Simmons, Carl R.; Torok, Tamas; Yalpani, Nasser

    2010-04-20

    Compositions and methods for protecting a plant from a pathogen, particularly a fungal pathogen, are provided. Compositions include amino acid sequences, and variants and fragments thereof, for antipathogenic polypeptides that were isolated from fungal fermentation broths. Nucleic acids that encode the antipathogenic polypeptides are also provided. A method for inducing pathogen resistance in a plant using the nucleotide sequences disclosed herein is further provided. The method comprises introducing into a plant an expression cassette comprising a promoter operably linked to a nucleotide sequence that encodes an antipathogenic polypeptide of the invention. Compositions comprising an antipathogenic polypeptide or a transformed microorganism comprising a nucleic acid of the invention in combination with a carrier and methods of using these compositions to protect a plant from a pathogen are further provided. Transformed plants, plant cells, seeds, and microorganisms comprising a nucleotide sequence that encodes an antipathogenic polypeptide of the invention are also disclosed.

  16. Prefrontal activity and impaired memory encoding strategies in schizophrenia.

    PubMed

    Guimond, Synthia; Hawco, Colin; Lepage, Martin

    2017-03-08

    Schizophrenia patients have significant memory difficulties that have far-reaching implications in their daily life. These impairments are partly attributed to an inability to self-initiate effective memory encoding strategies, but its core neurobiological correlates remain unknown. The current study addresses this critical gap in our knowledge of episodic memory impairments in schizophrenia. Schizophrenia patients (n = 35) and healthy controls (n = 23) underwent a Semantic Encoding Memory Task (SEMT) during an fMRI scan. Brain activity was examined for conditions where participants were a) prompted to use semantic encoding strategies, or b) not prompted but required to self-initiate such strategies. When prompted to use semantic encoding strategies, schizophrenia patients exhibited similar recognition performance and brain activity as healthy controls. However, when required to self-initiate these strategies, patients had significant reduced recognition performance and brain activity in the left dorsolateral prefrontal cortex, as well as in the left temporal gyrus, left superior parietal lobule, and cerebellum. When patients were divided based on performance on the SEMT, the subgroup with more severe deficits in self-initiation also showed greater reduction in left dorsolateral prefrontal activity. These results suggest that impaired self-initiation of elaborative encoding strategies is a driving feature of memory deficits in schizophrenia. We also identified the neural correlates of impaired self-initiation of semantic encoding strategies, in which a failure to activate the left dorsolateral prefrontal cortex plays a key role. These findings provide important new targets in the development of novel treatments aiming to improve memory and ultimately patients' outcome.

  17. Negative affect promotes encoding of and memory for details at the expense of the gist: affect, encoding, and false memories.

    PubMed

    Storbeck, Justin

    2013-01-01

    I investigated whether negative affective states enhance encoding of and memory for item-specific information reducing false memories. Positive, negative, and neutral moods were induced, and participants then completed a Deese-Roediger-McDermott (DRM) false-memory task. List items were presented in unique spatial locations or unique fonts to serve as measures for item-specific encoding. The negative mood conditions had more accurate memories for item-specific information, and they also had fewer false memories. The final experiment used a manipulation that drew attention to distinctive information, which aided learning for DRM words, but also promoted item-specific encoding. For the condition that promoted item-specific encoding, false memories were reduced for positive and neutral mood conditions to a rate similar to that of the negative mood condition. These experiments demonstrated that negative affective cues promote item-specific processing reducing false memories. People in positive and negative moods encode events differently creating different memories for the same event.

  18. Frequency- and Phase Encoded SSVEP Using Spatiotemporal Beamforming

    PubMed Central

    Van Hulle, Marc M.

    2016-01-01

    In brain-computer interfaces (BCIs) based on steady-state visual evoked potentials (SSVEPs) the number of selectable targets is rather limited when each target has its own stimulation frequency. One way to remedy this is by combining frequency- with phase encoding. We introduce a new multivariate spatiotemporal filter, based on Linearly Constrained Minimum Variance (LCMV) beamforming, for discriminating between frequency-phase encoded targets more accurately, even when using short signal lengths than with (extended) Canonical Correlation Analysis (CCA), which is traditionally posited for this stimulation paradigm. PMID:27486801

  19. Design and Synthesis of Biaryl DNA-Encoded Libraries.

    PubMed

    Ding, Yun; Franklin, G Joseph; DeLorey, Jennifer L; Centrella, Paolo A; Mataruse, Sibongile; Clark, Matthew A; Skinner, Steven R; Belyanskaya, Svetlana

    2016-10-10

    DNA-encoded library technology (ELT) is a powerful tool for the discovery of new small-molecule ligands to various protein targets. Here we report the design and synthesis of biaryl DNA-encoded libraries based on the scaffold of 5-formyl 3-iodobenzoic acid. Three reactions on DNA template, acylation, Suzuki-Miyaura coupling and reductive amination, were applied in the library synthesis. The three cycle library of 3.5 million diversity has delivered potent hits for phosphoinositide 3-kinase α (PI3Kα).

  20. An ORF from Bacillus licheniformis encodes a putative DNA repressor.

    PubMed

    Naval, J; Aguilar, D; Serra, X; Pérez-Pons, J A; Piñol, J; Lloberas, J; Querol, E

    2000-01-01

    The complete sequence of a reading frame adjacent to the endo-beta-1,3-1,4-D-glucanase gene from Bacillus licheniformis is reported. It encodes a putative 171 amino acid residues protein with either, low significant sequence similarity in data banks or the corresponding orthologue in the recently sequenced Bacillus subtilis genome. Computer analyses predict a canonical Helix-Turn-Helix motif characteristic of bacterial repressors/DNA binding proteins. A maxicells assay shows that the encoded polypeptide is expressed. A DNA-protein binding, assay performed by gel electrophoresis shows that the expressed protein specifically binds to Bacillus licheniformis DNA.

  1. Hybrid architecture for encoded measurement-based quantum computation

    PubMed Central

    Zwerger, M.; Briegel, H. J.; Dür, W.

    2014-01-01

    We present a hybrid scheme for quantum computation that combines the modular structure of elementary building blocks used in the circuit model with the advantages of a measurement-based approach to quantum computation. We show how to construct optimal resource states of minimal size to implement elementary building blocks for encoded quantum computation in a measurement-based way, including states for error correction and encoded gates. The performance of the scheme is determined by the quality of the resource states, where within the considered error model a threshold of the order of 10% local noise per particle for fault-tolerant quantum computation and quantum communication. PMID:24946906

  2. Authentication of gold nanoparticle encoded pharmaceutical tablets using polarimetric signatures.

    PubMed

    Carnicer, Artur; Arteaga, Oriol; Suñé-Negre, Josep M; Javidi, Bahram

    2016-10-01

    The counterfeiting of pharmaceutical products represents concerns for both industry and the safety of the general public. Falsification produces losses to companies and poses health risks for patients. In order to detect fake pharmaceutical tablets, we propose producing film-coated tablets with gold nanoparticle encoding. These coated tablets contain unique polarimetric signatures. We present experiments to show that ellipsometric optical techniques, in combination with machine learning algorithms, can be used to distinguish genuine and fake samples. To the best of our knowledge, this is the first report using gold nanoparticles encoded with optical polarimetric classifiers to prevent the counterfeiting of pharmaceutical products.

  3. Mosaic tetracycline resistance genes encoding ribosomal protection proteins.

    PubMed

    Warburton, Philip J; Amodeo, Nina; Roberts, Adam P

    2016-12-01

    First reported in 2003, mosaic tetracycline resistance genes are a subgroup of the genes encoding ribosomal protection proteins (RPPs). They are formed when two or more RPP-encoding genes recombine resulting in a functional chimera. To date, the majority of mosaic genes are derived from sections of three RPP genes, tet(O), tet(W) and tet(32), with others comprising tet(M) and tet(S). In this first review of mosaic genes, we report on their structure, diversity and prevalence, and suggest that these genes may be responsible for an under-reported contribution to tetracycline resistance in bacteria.

  4. Modified 8×8 quantization table and Huffman encoding steganography

    NASA Astrophysics Data System (ADS)

    Guo, Yongning; Sun, Shuliang

    2014-10-01

    A new secure steganography, which is based on Huffman encoding and modified quantized discrete cosine transform (DCT) coefficients, is provided in this paper. Firstly, the cover image is segmented into 8×8 blocks and modified DCT transformation is applied on each block. Huffman encoding is applied to code the secret image before embedding. DCT coefficients are quantized by modified quantization table. Inverse DCT(IDCT) is conducted on each block. All the blocks are combined together and the steg image is finally achieved. The experiment shows that the proposed method is better than DCT and Mahender Singh's in PSNR and Capacity.

  5. Role of voluntary drive in encoding an elementary motor memory.

    PubMed

    Kaelin-Lang, Alain; Sawaki, Lumy; Cohen, Leonardo G

    2005-02-01

    Motor training consisting of repetitive thumb movements results in encoding of motor memories in the primary motor cortex. It is not known if proprioceptive input originating in the training movements is sufficient to produce this effect. In this study, we compared the ability of training consisting of voluntary (active) and passively-elicited (passive) movements to induce this form of plasticity. Active training led to successful encoding accompanied by characteristic changes in corticomotor excitability, while passive training did not. These results support a pivotal role for voluntary motor drive in coding motor memories in the primary motor cortex.

  6. Mosaic tetracycline resistance genes encoding ribosomal protection proteins

    PubMed Central

    Warburton, Philip J.; Amodeo, Nina; Roberts, Adam P.

    2016-01-01

    First reported in 2003, mosaic tetracycline resistance genes are a subgroup of the genes encoding ribosomal protection proteins (RPPs). They are formed when two or more RPP-encoding genes recombine resulting in a functional chimera. To date, the majority of mosaic genes are derived from sections of three RPP genes, tet(O), tet(W) and tet(32), with others comprising tet(M) and tet(S). In this first review of mosaic genes, we report on their structure, diversity and prevalence, and suggest that these genes may be responsible for an under-reported contribution to tetracycline resistance in bacteria. PMID:27494928

  7. Engineering a fully GPU-accelerated H.264 encoder

    NASA Astrophysics Data System (ADS)

    Li, Bowei; Deng, Yangdong S.

    2013-07-01

    H.264/AVC is the most popular video coding standard and playing an essential role in today's Internet based content-delivery businesses. H.264's encoding process is highly computationally expensive due to the integration of complex video coding techniques. As a result, transcoding has become a bottleneck of content-hosting services. Recently, general purpose computing on graphics processing units (GPUs) is rapidly rising as a popular computing model to expedite time-consuming applications. In this paper, we propose a fully GPU-accelerated H.264 encoder. Experimental results show that a 100% speed-up ratio can be achieved.

  8. Identification and Function of MicroRNAs Encoded by Herpesviruses*

    PubMed Central

    Bai, Zhi-Qiang; Lei, Xiu-Fen; Wang, Lin-Ding; Gao, Shou-Jiang

    2009-01-01

    MicroRNAs (miRNAs) play important roles in eukaryotes, plants and some viruses. It is increasingly clear that miRNAs-encoded by viruses can affect the viral life cycle and host physiology. Viral miRNAs could repress the innate and adaptive host immunity, modulate cellular signaling pathways, and regulate the expression of cellular and viral genes. These functions facilitate viral acute and persistent infections, and have profound effects on the host cell survival and disease progression. Here, we discuss the miRNAs encoded by herpesviruses, and their regulatory roles involved in virus-host interactions. PMID:20084183

  9. Polypeptides having cellulolytic enhancing activity and nucleic acids encoding same

    SciTech Connect

    Brown, Kimberly; Harris, Paul; Zaretsky, Elizabeth; Re, Edward; Vlasenko, Elena; McFarland, Keith; Lopez de Leon, Alfredo

    2016-08-09

    The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods for producing and using the polypeptides.

  10. EGVII endoglucanase and nucleic acids encoding the same

    SciTech Connect

    Dunn-Coleman, Nigel; Goedegebuur, Frits; Ward, Michael; Yao, Jian

    2013-07-16

    The present invention provides a novel endoglucanase nucleic acid sequence, designated egl7, and the corresponding EGVII amino acid sequence. The invention also provides expression vectors and host cells comprising a nucleic acid sequence encoding EGVII, recombinant EGVII proteins and methods for producing the same.

  11. Polypeptides having cellulolytic enhancing activity and nucleic acids encoding same

    SciTech Connect

    Brown, Kimberly; Harris, Paul; Zaretsky, Elizabeth; Re, Edward; Vlasenko, Elena; McFarland, Keith; Lopez de Leon, Alfredo

    2014-09-30

    The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods for producing and using the polypeptides.

  12. Polypeptides having xylanase activity and polynucleotides encoding same

    SciTech Connect

    Tang, Lan; Liu, Ye; Duan, Junxin; Hanshu, Ding

    2012-10-30

    The present invention relates to isolated polypeptides having xylanase activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  13. Cytotoxic Escherichia coli strains encoding colibactin colonize laboratory mice.

    PubMed

    García, Alexis; Mannion, Anthony; Feng, Yan; Madden, Carolyn M; Bakthavatchalu, Vasudevan; Shen, Zeli; Ge, Zhongming; Fox, James G

    2016-12-01

    Escherichia coli strains have not been fully characterized in laboratory mice and are not currently excluded from mouse colonies. Colibactin (Clb), a cytotoxin, has been associated with inflammation and cancer in humans and animals. We performed bacterial cultures utilizing rectal swab, fecal, and extra intestinal samples from clinically unaffected or affected laboratory mice. Fifty-one E. coli were isolated from 45 laboratory mice, identified biochemically, and selected isolates were serotyped. The 16S rRNA gene was amplified and sequenced for specific isolates, PCR used for clbA and clbQ gene amplification, and phylogenetic group identification was performed on all 51 E. coli strains. Clb genes were sequenced and selected E. coli isolates were characterized using a HeLa cell cytotoxicity assay. Forty-five of the 51 E. coli isolates (88%) encoded clbA and clbQ and belonged to phylogenetic group B2. Mouse E. coli serotypes included: O2:H6, O-:H-, OM:H+, and O22:H-. Clb-encoding O2: H6 mouse E. coli isolates were cytotoxic in vitro. A Clb-encoding E. coli was isolated from a clinically affected genetically modified mouse with cystic endometrial hyperplasia. Our findings suggest that Clb-encoding E. coli colonize laboratory mice and may induce clinical and subclinical diseases that may impact experimental mouse models.

  14. Polypeptides having beta-glucosidase activity and polynucleotides encoding same

    SciTech Connect

    Morant, Marc

    2014-01-14

    The present invention relates to isolated polypeptides having beta-glucosidase activity, beta-xylosidase, or beta-glucosidase activity and isolated polynucleotides encoding polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  15. Polypeptides having cellulolytic enhancing activity and polynucleotides encoding same

    SciTech Connect

    Zhang, Yu; Duan, Junxin; Tang, Lan; Wu, Wenping

    2016-06-14

    The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  16. Polypeptides having xylanase activity and polynucleotides encoding same

    SciTech Connect

    Lopez de Leon, Alfredo; Rey, Michael

    2016-05-31

    The present invention relates to isolated polypeptides having xylanase activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  17. Compact hyperspectral image sensor based on a novel hyperspectral encoder

    NASA Astrophysics Data System (ADS)

    Hegyi, Alex N.; Martini, Joerg

    2015-06-01

    A novel hyperspectral imaging sensor is demonstrated that can enable breakthrough applications of hyperspectral imaging in domains not previously accessible. Our technology consists of a planar hyperspectral encoder combined with a traditional monochrome image sensor. The encoder adds negligibly to the sensor's overall size, weight, power requirement, and cost (SWaP-C); therefore, the new imager can be incorporated wherever image sensors are currently used, such as in cell phones and other consumer electronics. In analogy to Fourier spectroscopy, the technique maintains a high optical throughput because narrow-band spectral filters are unnecessary. Unlike conventional Fourier techniques that rely on Michelson interferometry, our hyperspectral encoder is robust to vibration and amenable to planar integration. The device can be viewed within a computational optics paradigm: the hardware is uncomplicated and serves to increase the information content of the acquired data, and the complexity of the system, that is, the decoding of the spectral information, is shifted to computation. Consequently, system tradeoffs, for example, between spectral resolution and imaging speed or spatial resolution, are selectable in software. Our prototype demonstration of the hyperspectral imager is based on a commercially-available silicon CCD. The prototype encoder was inserted within the camera's ~1 cu. in. housing. The prototype can image about 49 independent spectral bands distributed from 350 nm to 1250 nm, but the technology may be extendable over a wavelength range from ~300 nm to ~10 microns, with suitable choice of detector.

  18. EGVII endoglucanase and nucleic acids encoding the same

    DOEpatents

    Dunn-Coleman, Nigel; Goedegebuur, Frits; Ward, Michael; Yao, Jian

    2015-04-14

    The present invention provides a novel endoglucanase nucleic acid sequence, designated egl7, and the corresponding EGVII amino acid sequence. The invention also provides expression vectors and host cells comprising a nucleic acid sequence encoding EGVII, recombinant EGVII proteins and methods for producing the same.

  19. Hearing What the Body Feels: Auditory Encoding of Rhythmic Movement

    ERIC Educational Resources Information Center

    Phillips-Silver, Jessica; Trainor, Laurel J.

    2007-01-01

    Phillips-Silver and Trainor (Phillips-Silver, J., Trainor, L.J., (2005). Feeling the beat: movement influences infants' rhythm perception. "Science", 308, 1430) demonstrated an early cross-modal interaction between body movement and auditory encoding of musical rhythm in infants. Here we show that the way adults move their bodies to music…

  20. Polypeptides having cellulolytic enhancing activity and polynucleotides encoding same

    DOEpatents

    Zhang, Yu; Duan, Junxin; Tang, Lan; Wu, Wenping

    2016-11-22

    The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  1. Drug discovery with DNA-encoded chemical libraries.

    PubMed

    Buller, Fabian; Mannocci, Luca; Scheuermann, Jörg; Neri, Dario

    2010-09-15

    DNA-encoded chemical libraries represent a novel avenue for the facile discovery of small molecule ligands against target proteins of biological or pharmaceutical importance. Library members consist of small molecules covalently attached to unique DNA fragments that serve as amplifiable identification barcodes. This encoding allows the in vitro selection of ligands at subpicomolar concentrations from large library populations by affinity capture on a target protein of interest, in analogy to established technologies for the selection of binding polypeptides (e.g., antibodies). Different library formats have been explored by various groups, allowing the construction of chemical libraries comprising up to millions of DNA-encoded compounds. Libraries before and after selection have been characterized by PCR amplification of the DNA codes and subsequent relative quantification of library members using high-throughput sequencing. The most enriched compounds have then been further analyzed in biological assays, in the presence or in the absence of linked DNA. This article reviews experimental strategies used for the construction of DNA-encoded chemical libraries, revealing how selection, decoding, and hit validation technologies have been used for drug discovery programs.

  2. Amount of Postcue Encoding Predicts Amount of Directed Forgetting

    ERIC Educational Resources Information Center

    Pastotter, Bernhard; Bauml, Karl-Heinz

    2010-01-01

    In list-method directed forgetting, participants are cued to intentionally forget a previously studied list (List 1) before encoding a subsequently presented list (List 2). Compared with remember-cued participants, forget-cued participants typically show impaired recall of List 1 and improved recall of List 2, referred to as List 1 forgetting and…

  3. Fluorescence upconversion microbarcodes for multiplexed biological detection: nucleic acid encoding.

    PubMed

    Zhang, Fan; Shi, Qihui; Zhang, Yichi; Shi, Yifeng; Ding, Kunlun; Zhao, Dongyuan; Stucky, Galen D

    2011-09-01

    Fluoride rare-earth-doped upconversion microbarcodes have been successfully developed for multiplexed signaling and nucleic-acid encoding. This kind of novel barcode material can be used for rapid and sensitive analysis of nucleic acids and antigens, which would have many potential applications in clinical, food, and environment detection.

  4. High speed image acquisition system of absolute encoder

    NASA Astrophysics Data System (ADS)

    Liao, Jianxiang; Chen, Xin; Chen, Xindu; Zhang, Fangjian; Wang, Han

    2017-01-01

    Absolute optical encoder as a product of optical, mechanical and electronic integration has been widely used in displacement measuring fields. However, how to improve the measurement velocity and reduce the manufacturing cost of absolute optical encoder is the key problem to be solved. To improve the measurement speed, a novel absolute optical encoder image acquisition system is proposed. The proposed acquisition system includes a linear CCD sensor is applied for capturing coding pattern images, an optical magnifying system is used for enlarging the grating stripes, an analog-digital conversion(ADC) module is used for processing the CCD analogy signal, a field programmable gate array(FPGA) device and other peripherals perform driving task. An absolute position measurement experiment was set up to verify and evaluate the proposed image acquisition system. The experimental result indicates that the proposed absolute optical encoder image acquisition system has the image acquisition speed of more than 9500fp/s with well reliability and lower manufacture cost.

  5. Generalized non-separable two-dimensional Dammann encoding method

    NASA Astrophysics Data System (ADS)

    Yu, Junjie; Zhou, Changhe; Zhu, Linwei; Lu, Yancong; Wu, Jun; Jia, Wei

    2017-01-01

    We generalize for the first time, to the best of our knowledge, the Dammann encoding method into non-separable two-dimensional (2D) structures for designing various pure-phase Dammann encoding gratings (DEGs). For examples, three types of non-separable 2D DEGs, including non-separable binary Dammann vortex gratings, non-separable binary distorted Dammann gratings, and non-separable continuous-phase cubic gratings, are designed theoretically and demonstrated experimentally. Correspondingly, it is shown that 2D square arrays of optical vortices with topological charges proportional to the diffraction orders, focus spots shifting along both transversal and axial directions with equal spacings, and Airy-like beams with controllable orientation for each beam, are generated in symmetry or asymmetry by these three DEGs, respectively. Also, it is shown that a more complex-shaped array of modulated beams could be achieved by this non-separable 2D Dammann encoding method, which will be a big challenge for those conventional separable 2D Dammann encoding gratings. Furthermore, the diffractive efficiency of the gratings can be improved around ∼10% when the non-separable structure is applied, compared with their conventional separable counterparts. Such improvement in the efficiency should be of high significance for some specific applications.

  6. It Is All Relative: How Young Children Encode Extent

    ERIC Educational Resources Information Center

    Duffy, Sean; Huttenlocher, Janellen; Levine, Susan

    2005-01-01

    Two experiments tested the ability of 4- and 8-year-old children to encode the extent of a target dowel and later discriminate between the target and a foil having a novel extent. By manipulating the heights of containers in which we presented the stimuli we tested whether children used the relation between the dowels and containers for encoding…

  7. Selective memories: infants' encoding is enhanced in selection via suppression.

    PubMed

    Markant, Julie; Amso, Dima

    2013-11-01

    The present study examined the hypothesis that inhibitory visual selection mechanisms play a vital role in memory by limiting distractor interference during item encoding. In Experiment 1a we used a modified spatial cueing task in which 9-month-old infants encoded multiple category exemplars in the contexts of an attention orienting mechanism involving suppression (i.e. inhibition of return, IOR) versus one that does not (i.e. facilitation). At test, infants in the IOR condition showed both item-specific learning and abstraction of broader category information. In contrast, infants in the facilitation condition did not discriminate across novel and familiar test items. Experiment 1b confirmed that the learning observed in the IOR condition was specific to spatial cueing of attention and was not due to timing differences across the IOR and facilitation conditions. In Experiment 2, we replicated the results of Experiment 1, using a within-subjects design to explicitly examine learning and memory encoding in the context of concurrent suppression. These data show that developing inhibitory selective attention enhances efficacy of memory encoding for subsequent retrieval. Furthermore, these results highlight the importance of considering interactions between developing attention and memory systems.

  8. Professional Training for Encoded Archival Description in Europe

    ERIC Educational Resources Information Center

    Fox, Michael

    2005-01-01

    This paper represents an abridgement of a panel session that reported on the status of training for archivists in the use of Encoded Archival Description (EAD) in seven countries (France, Germany, Netherlands, Portugal, Switzerland, United Kingdom, and United States). It touched on related archival descriptive standards and practices and…

  9. Quantum-dots-encoded-microbeads based molecularly imprinted polymer.

    PubMed

    Liu, Yixi; Liu, Le; He, Yonghong; He, Qinghua; Ma, Hui

    2016-03-15

    Quantum dots encoded microbeads have various advantages such as large surface area, superb optical properties and the ability of multiplexing. Molecularly imprinted polymer that can mimic the natural recognition entities has high affinity and selectivity for the specific analyte. Here, the concept of utilizing the quantum dots encoded microbeads as the supporting material and the polydopamine as the functional monomer to form the core-shell molecular imprinted polymer was proposed for the first time. The resulted imprinted polymer can provide various merits: polymerization can complete in aqueous environment; fabrication procedure is facile and universal; the obvious economic advantage; the thickness of the imprinting layer is highly controllable; polydopamine coating can improve the biocompatibility of the quantum dot encoded microbeads. The rabbit IgG binding and flow cytometer experiment result showed the distinct advantages of this strategy: cost-saving, facile and fast preparation procedure. Most importantly, the ability for the multichannel detection, which makes the imprinted polydopamine modified encoded-beads very attractive in protein pre-concentration, recognition, separation and biosensing.

  10. Separate Mnemonic Effects of Retrieval Practice and Elaborative Encoding

    ERIC Educational Resources Information Center

    Karpicke, Jeffrey D.; Smith, Megan A.

    2012-01-01

    Does retrieval practice produce learning because it is an especially effective way to induce elaborative encoding? Four experiments examined this question. Subjects learned word pairs across alternating study and recall periods, and once an item was recalled it was dropped from further practice, repeatedly studied, or repeatedly retrieved on…

  11. A Test of Confusion Theory of Encoding Specificity

    ERIC Educational Resources Information Center

    Wiseman, Sandor; Tulving, Endel

    1975-01-01

    Subjects studied and were tested for recognition and recall of target words on lists of cue-target word pairs. List-cued recall was higher than non-cued recall, suggesting that recognition failure is independent of subjects' familiarity with task requirements. This contradicts attribution of encoding specificity phenomena to subjects' confusion.…

  12. Learning and Transfer: A General Role for Analogical Encoding.

    ERIC Educational Resources Information Center

    Gentner, Dedre; Loewenstein, Jeffrey; Thompson, Leigh

    2003-01-01

    Tests an adaptation to case-based learning that facilitates abstracting problem-solving schemas from examples and using them to solve further problems: analogical encoding, or learning by drawing a comparison across examples. In 3 studies, the authors examined schema abstraction and transfer among novices learning negotiation strategies. (Contains…

  13. Forgetting from Working Memory: Does Novelty Encoding Matter?

    ERIC Educational Resources Information Center

    Plancher, Gaen; Barrouillet, Pierre

    2013-01-01

    The sources of forgetting in working memory remain the matter of intense debate. According to the SOB model (serial order in a box; Farrell & Lewandowsky, 2002), forgetting in complex span tasks does not result from temporal decay but from interference produced by the encoding of distractors that are superimposed over memory items onto a…

  14. Neural Activity during Encoding Predicts False Memories Created by Misinformation

    ERIC Educational Resources Information Center

    Okado, Yoko; Stark, Craig E. L.

    2005-01-01

    False memories are often demonstrated using the misinformation paradigm, in which a person's recollection of a witnessed event is altered after exposure to misinformation about the event. The neural basis of this phenomenon, however, remains unknown. The authors used fMRI to investigate encoding processes during the viewing of an event and…

  15. Extraordinarily Adaptive Properties of the Genetically Encoded Amino Acids

    PubMed Central

    Ilardo, Melissa; Meringer, Markus; Freeland, Stephen; Rasulev, Bakhtiyor; Cleaves II, H. James

    2015-01-01

    Using novel advances in computational chemistry, we demonstrate that the set of 20 genetically encoded amino acids, used nearly universally to construct all coded terrestrial proteins, has been highly influenced by natural selection. We defined an adaptive set of amino acids as one whose members thoroughly cover relevant physico-chemical properties, or “chemistry space.” Using this metric, we compared the encoded amino acid alphabet to random sets of amino acids. These random sets were drawn from a computationally generated compound library containing 1913 alternative amino acids that lie within the molecular weight range of the encoded amino acids. Sets that cover chemistry space better than the genetically encoded alphabet are extremely rare and energetically costly. Further analysis of more adaptive sets reveals common features and anomalies, and we explore their implications for synthetic biology. We present these computations as evidence that the set of 20 amino acids found within the standard genetic code is the result of considerable natural selection. The amino acids used for constructing coded proteins may represent a largely global optimum, such that any aqueous biochemistry would use a very similar set. PMID:25802223

  16. Extraordinarily Adaptive Properties of the Genetically Encoded Amino Acids

    NASA Astrophysics Data System (ADS)

    Ilardo, Melissa; Meringer, Markus; Freeland, Stephen; Rasulev, Bakhtiyor; Cleaves, H. James, II

    2015-03-01

    Using novel advances in computational chemistry, we demonstrate that the set of 20 genetically encoded amino acids, used nearly universally to construct all coded terrestrial proteins, has been highly influenced by natural selection. We defined an adaptive set of amino acids as one whose members thoroughly cover relevant physico-chemical properties, or ``chemistry space.'' Using this metric, we compared the encoded amino acid alphabet to random sets of amino acids. These random sets were drawn from a computationally generated compound library containing 1913 alternative amino acids that lie within the molecular weight range of the encoded amino acids. Sets that cover chemistry space better than the genetically encoded alphabet are extremely rare and energetically costly. Further analysis of more adaptive sets reveals common features and anomalies, and we explore their implications for synthetic biology. We present these computations as evidence that the set of 20 amino acids found within the standard genetic code is the result of considerable natural selection. The amino acids used for constructing coded proteins may represent a largely global optimum, such that any aqueous biochemistry would use a very similar set.

  17. Polypeptides having cellobiohydrolase activity and polynucleotides encoding same

    DOEpatents

    Liu, Ye; Harris, Paul; Tang, Lan; Wu, Wenping

    2013-11-19

    The present invention relates to isolated polypeptides having cellobiohydrolase activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  18. Polypeptides having cellulolytic enhancing activity and polynucleotides encoding same

    DOEpatents

    Maiyuran, Suchindra; Kramer, Randall; Harris, Paul

    2014-10-21

    The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  19. An algebra for the analysis of object encoding.

    PubMed

    Tyler, Christopher W; Likova, Lora T

    2010-04-15

    The encoding of the objects from the world around us is one of the major topics of cognitive psychology, yet the principles of object coding in the human brain remain unresolved. Beyond referring to the particular features commonly associated with objects, our ability to categorize and discuss objects in detailed linguistic propositions implies that we have access to generic concepts of each object category with well-specified boundaries between them. Consideration of the nature of generic object concepts reveals that they must have the structure of a probabilistic list array specifying the Bayesian prior on all possible features that the object can possess, together with mutual covariance matrices among the features. Generic object concepts must also be largely context independent for propositions to have communicable meaning. Although, there is good evidence for local feature processing in the occipital lobe and specific responses for a few basic object categories in the posterior temporal lobe, the encoding of the generic object concepts remains obscure. We analyze the conceptual underpinnings of the study of object encoding, draw some necessary clarifications in relation to its modality-specific and amodal aspects, and propose an analytic algebra with specific reference to functional Magnetic Resonance Imaging approaches to the issue of how generic (amodal) object concepts are encoded in the human brain.

  20. Superior memorizers employ different neural networks for encoding and recall.

    PubMed

    Mallow, Johannes; Bernarding, Johannes; Luchtmann, Michael; Bethmann, Anja; Brechmann, André

    2015-01-01

    Superior memorizers often employ the method of loci (MoL) to memorize large amounts of information. The MoL, known since ancient times, relies on a complex process where information to be memorized is bound to landmarks along mental routes in a previously memorized environment. However, functional magnetic resonance imaging data on groups of trained superior memorizer are rare. Based on the memorizing strategy reported by superior memorizers, we developed a scheme of the processes successively employed during memorizing and recalling digits and relate these to brain activation that is specific for the encoding and recall period. In the examined superior memorizers several regions, suggested to be involved in mental navigation and digit-to-word processing, were specifically activated during encoding: bilateral early visual cortex, retrosplenial cortex, left parahippocampus, left visual cortex, and left superior parietal cortex. Although the scheme suggests that some steps during encoding and recall seem to be analog, none of the encoding areas were specifically activated during the recall. Instead, we found strong activation in left anterior superior temporal gyrus, which we relate to recalling the sequential order of the digits, and right motor cortex that may be related to reciting the digits.

  1. Polypeptides having cellulolytic enhancing activity and polynucleotides encoding same

    SciTech Connect

    Schnorr, Kirk; Kramer, Randall

    2016-04-05

    The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  2. Word form Encoding in Chinese Word Naming and Word Typing

    ERIC Educational Resources Information Center

    Chen, Jenn-Yeu; Li, Cheng-Yi

    2011-01-01

    The process of word form encoding was investigated in primed word naming and word typing with Chinese monosyllabic words. The target words shared or did not share the onset consonants with the prime words. The stimulus onset asynchrony (SOA) was 100 ms or 300 ms. Typing required the participants to enter the phonetic letters of the target word,…

  3. EGVII endoglucanase and nucleic acids encoding the same

    SciTech Connect

    Dunn-Coleman, Nigel; Goedegebuur, Frits; Ward, Michael; Yao, Jian

    2014-02-25

    The present invention provides a novel endoglucanase nucleic acid sequence, designated egl7, and the corresponding EGVII amino acid sequence. The invention also provides expression vectors and host cells comprising a nucleic acid sequence encoding EGVII, recombinant EGVII proteins and methods for producing the same.

  4. Neural Correlates of the Encoding of Multimodal Contextual Features

    ERIC Educational Resources Information Center

    Gottlieb, Lauren J.; Wong, Jenny; de Chastelaine, Marianne; Rugg, Michael D.

    2012-01-01

    Functional magnetic resonance imaging (fMRI) was employed to identify neural regions engaged during the encoding of contextual features belonging to different modalities. Subjects studied objects that were presented to the left or right of fixation. Each object was paired with its name, spoken in either a male or a female voice. The test…

  5. cDNA encoding a polypeptide including a hevein sequence

    DOEpatents

    Raikhel, N.V.; Broekaert, W.F.; Namhai Chua; Kush, A.

    1993-02-16

    A cDNA clone (HEV1) encoding hevein was isolated via polymerase chain reaction (PCR) using mixed oligonucleotides corresponding to two regions of hevein as primers and a Hevea brasiliensis latex cDNA library as a template. HEV1 is 1,018 nucleotides long and includes an open reading frame of 204 amino acids.

  6. A Fresh Look at How Young Children Encode New Referents

    ERIC Educational Resources Information Center

    De Cat, Cecile

    2004-01-01

    This paper examines the evidence used to support the claim that children initially do not encode new referents like adults do (e.g., Maratsos 1974; Warden 1976; Emslie and Stevenson 1981; Hickmann et al. 1996). It argues that a better understanding of the information structure of the target language forces a reinterpretation of previous…

  7. Five-degrees-of-freedom diffractive laser encoder

    SciTech Connect

    Liu, Chien-Hung; Huang, Hsueh-Liang; Lee, Hau-Wei

    2009-05-10

    Linear laser encoders have been widely used for precision positioning control of a linear stage. We develop a five-degrees-of-freedom (5-DOF) laser linear encoder to simultaneously measure the position, straightness, pitch, roll, and yaw errors along one moving axis. This study integrates the circular polarized interferometric technique with the three-dimensional diffracted ray-tracing method to develop a novel laser encoder with 5-DOF. The phases encoded within the +1 and -1 order diffraction lights reflected from the diffraction grating are decoded by the circular polarized interferometric technique to measure the linear displacement when the diffraction grating moves. The three-dimensional diffracted ray tracing of the +1- and -1-order diffraction lights induced by the motion errors of the moved grating were analyzed to calculate the other motion errors based on the detection of light spots on two quadrant photodiode detectors. The period of the grating is 0.83 {mu}m and the experimental results show that the measurement accuracy was better than {+-}0.3 {mu}m/{+-}41 {mu}m for straightness, {+-}1 arc sec.

  8. Polypeptides having xylanase activity and polynucleotides encoding same

    DOEpatents

    Lopez de Leon, Alfredo; Rey, Michael

    2010-12-14

    The present invention relates to isolated polypeptides having xylanase activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  9. Polypeptides having cellulolytic enhancing activity and polynucleotides encoding same

    DOEpatents

    Dotson, William D.; Greenier, Jennifer; Ding, Hanshu

    2007-09-18

    The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated nucleic acids encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the nucleic acids as well as methods for producing and using the polypeptides.

  10. Polypeptides having cellulolytic enhancing activity and polynucleotides encoding same

    DOEpatents

    Lopez de Leon, Alfredo; Ding, Hanshu; Brown, Kimberly

    2011-10-25

    The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  11. Polypeptides having endoglucanase activity and polynucleotides encoding same

    DOEpatents

    Harris, Paul [Carnation, WA; Lopez de Leon, Alfredo [Davis, CA; Rey, Micheal [Davis, CA; Ding, Hanshu [Davis, CA; Vlasenko, Elena [Davis, CA

    2012-02-21

    The present invention relates to isolated polypeptides having endoglucanase activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods for producing and using the polypeptides.

  12. DNA encoding for plant digalactosyldiacylglycerol galactosyltransferase and methods of use

    DOEpatents

    Benning, Christoph; Doermann, Peter

    2003-11-04

    The cDNA encoding digalactosyldiacylglycerol galactosyltransferase (DGD1) is provided. The deduced amino acid sequence is also provided. Methods of making and using DGD1 to screen for new herbicides and alter a plant's leaf lipid composition are also provided, as well as expression vectors, transgenic plants or other organisms transfected with said vectors.

  13. Multiplexed Sequence Encoding: A Framework for DNA Communication

    PubMed Central

    Zakeri, Bijan; Carr, Peter A.; Lu, Timothy K.

    2016-01-01

    Synthetic DNA has great propensity for efficiently and stably storing non-biological information. With DNA writing and reading technologies rapidly advancing, new applications for synthetic DNA are emerging in data storage and communication. Traditionally, DNA communication has focused on the encoding and transfer of complete sets of information. Here, we explore the use of DNA for the communication of short messages that are fragmented across multiple distinct DNA molecules. We identified three pivotal points in a communication—data encoding, data transfer & data extraction—and developed novel tools to enable communication via molecules of DNA. To address data encoding, we designed DNA-based individualized keyboards (iKeys) to convert plaintext into DNA, while reducing the occurrence of DNA homopolymers to improve synthesis and sequencing processes. To address data transfer, we implemented a secret-sharing system—Multiplexed Sequence Encoding (MuSE)—that conceals messages between multiple distinct DNA molecules, requiring a combination key to reveal messages. To address data extraction, we achieved the first instance of chromatogram patterning through multiplexed sequencing, thereby enabling a new method for data extraction. We envision these approaches will enable more widespread communication of information via DNA. PMID:27050646

  14. Evolutionary Genomics of Immunoglobulin-Encoding Loci in Vertebrates

    PubMed Central

    Das, Sabyasachi; Hirano, Masayuki; Tako, Rea; McCallister, Chelsea; Nikolaidis, Nikolas

    2012-01-01

    Immunoglobulins (or antibodies) are an essential element of the jawed vertebrate adaptive immune response system. These molecules have evolved over the past 500 million years and generated highly specialized proteins that recognize an extraordinarily large number of diverse substances, collectively known as antigens. During vertebrate evolution the diversification of the immunoglobulin-encoding loci resulted in differences in the genomic organization, gene content, and ratio of functional genes and pseudogenes. The tinkering process in the immunoglobulin-encoding loci often gave rise to lineage-specific characteristics that were formed by selection to increase species adaptation and fitness. Immunoglobulin loci and their encoded antibodies have been shaped repeatedly by contrasting evolutionary forces, either to conserve the prototypic structure and mechanism of action or to generate alternative and diversified structures and modes of function. Moreover, evolution favored the development of multiple mechanisms of primary and secondary antibody diversification, which are used by different species to effectively generate an almost infinite collection of diverse antibody types. This review summarizes our current knowledge on the genomics and evolution of the immunoglobulin-encoding loci and their protein products in jawed vertebrates. PMID:23024601

  15. Polypeptides having cellulolytic enhancing activity and polynucleotides encoding same

    DOEpatents

    Schnorr, Kirk; Kramer, Randall

    2016-08-09

    The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  16. Polypeptides having cellulolytic enhancing activity and polynucleotides encoding same

    DOEpatents

    Tang, Lan; Liu, Ye; Duan, Junxin; Zhang, Yu; Jorgensen, Christian Isak; Kramer, Randall

    2013-04-16

    The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  17. Polypeptides having cellulolytic enhancing activity and polynucleotides encoding same

    DOEpatents

    Duan, Junxin; Tang, Lan; Liu, Ye; Wu, Wenping; Quinlan, Jason; Kramer, Randall

    2013-06-18

    The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  18. Polypeptides having endoglucanase activity and polynucleotides encoding same

    DOEpatents

    Lopez de Leon, Alfredo; Rey, Michael

    2013-06-18

    The present invention relates to isolated polypeptides having endoglucanase activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  19. Polypeptides having cellobiohydrolase activity and polynucleotides encoding same

    SciTech Connect

    Morant, Marc D.; Harris, Paul

    2015-10-13

    The present invention relates to isolated polypeptides having cellobiohydrolase activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  20. Breast ultrasound computed tomography using waveform inversion with source encoding

    NASA Astrophysics Data System (ADS)

    Wang, Kun; Matthews, Thomas; Anis, Fatima; Li, Cuiping; Duric, Neb; Anastasio, Mark A.

    2015-03-01

    Ultrasound computed tomography (USCT) holds great promise for improving the detection and management of breast cancer. Because they are based on the acoustic wave equation, waveform inversion-based reconstruction methods can produce images that possess improved spatial resolution properties over those produced by ray-based methods. However, waveform inversion methods are computationally demanding and have not been applied widely in USCT breast imaging. In this work, source encoding concepts are employed to develop an accelerated USCT reconstruction method that circumvents the large computational burden of conventional waveform inversion methods. This method, referred to as the waveform inversion with source encoding (WISE) method, encodes the measurement data using a random encoding vector and determines an estimate of the speed-of-sound distribution by solving a stochastic optimization problem by use of a stochastic gradient descent algorithm. Computer-simulation studies are conducted to demonstrate the use of the WISE method. Using a single graphics processing unit card, each iteration can be completed within 25 seconds for a 128 × 128 mm2 reconstruction region. The results suggest that the WISE method maintains the high spatial resolution of waveform inversion methods while significantly reducing the computational burden.

  1. Encoding, Memory, and Transcoding Deficits in Childhood Apraxia of Speech

    ERIC Educational Resources Information Center

    Shriberg, Lawrence D.; Lohmeier, Heather L.; Strand, Edythe A.; Jakielski, Kathy J.

    2012-01-01

    A central question in Childhood Apraxia of Speech (CAS) is whether the core phenotype is limited to transcoding (planning/programming) deficits or if speakers with CAS also have deficits in auditory-perceptual "encoding" (representational) and/or "memory" (storage and retrieval of representations) processes. We addressed this and other questions…

  2. Immune Response to Plasmid- and Chromosome-Encoded Yersinia Antigens,

    DTIC Science & Technology

    The immune response of humans and mice to temperature-specific, plasmid- or chromosome-encoded proteins of Yersinia pestis and Yersinia ... enterocolitica was investigated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and Western blotting. Extracts from Y. pestis and Y. enterocolitica

  3. Laser optical disk position encoder with active heads

    NASA Technical Reports Server (NTRS)

    Osborne, Eric P.

    1991-01-01

    An angular position encoder that minimizes the effects of eccentricity and other misalignments between the disk and the read stations by employing heads with beam steering optics that actively track the disk in directions along the disk radius and normal to its surface is discussed. The device adapts features prevalent in optical disk technology to the application of angular position sensing.

  4. Superior memorizers employ different neural networks for encoding and recall

    PubMed Central

    Mallow, Johannes; Bernarding, Johannes; Luchtmann, Michael; Bethmann, Anja; Brechmann, André

    2015-01-01

    Superior memorizers often employ the method of loci (MoL) to memorize large amounts of information. The MoL, known since ancient times, relies on a complex process where information to be memorized is bound to landmarks along mental routes in a previously memorized environment. However, functional magnetic resonance imaging data on groups of trained superior memorizer are rare. Based on the memorizing strategy reported by superior memorizers, we developed a scheme of the processes successively employed during memorizing and recalling digits and relate these to brain activation that is specific for the encoding and recall period. In the examined superior memorizers several regions, suggested to be involved in mental navigation and digit-to-word processing, were specifically activated during encoding: bilateral early visual cortex, retrosplenial cortex, left parahippocampus, left visual cortex, and left superior parietal cortex. Although the scheme suggests that some steps during encoding and recall seem to be analog, none of the encoding areas were specifically activated during the recall. Instead, we found strong activation in left anterior superior temporal gyrus, which we relate to recalling the sequential order of the digits, and right motor cortex that may be related to reciting the digits. PMID:26441560

  5. Polypeptides having cellulolytic enhancing activity and polynucleotides encoding same

    SciTech Connect

    Lopez de Leon, Alfredo; Ding, Hanshu; Brown, Kimberly

    2012-06-26

    The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  6. Polypeptides having cellobiohydrolase activity and polynucleotides encoding same

    SciTech Connect

    Liu, Ye; Tang, Lan; Harris, Paul; Wu, Wenping

    2012-10-02

    The present invention relates to isolated polypeptides having cellobiohydrolase activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  7. EGVII endoglucanase and nucleic acids encoding the same

    DOEpatents

    Dunn-Coleman, Nigel [Los Gatos, CA; Goedegebuur, Frits [Vlaardingen, NL; Ward, Michael [San Francisco, CA; Yao, Jian [Sunnyvale, CA

    2012-02-14

    The present invention provides a novel endoglucanase nucleic acid sequence, designated egl7, and the corresponding EGVII amino acid sequence. The invention also provides expression vectors and host cells comprising a nucleic acid sequence encoding EGVII, recombinant EGVII proteins and methods for producing the same.

  8. The Nature of Phonological Encoding During Spoken Word Retrieval.

    ERIC Educational Resources Information Center

    Sullivan, Michael P.; Riffel, Brian

    1999-01-01

    Examined whether phonological selection occurs sequentially or in parallel. College students named picture primes and targets, with varied response stimulus intervals between primes and targets. Results were consistent with Dell's (1988) two-stage sequential model of encoding, which shows an initial parallel activation within a lexical network…

  9. Imagining Another Context during Encoding Offsets Context-Dependent Forgetting

    ERIC Educational Resources Information Center

    Masicampo, E. J.; Sahakyan, Lili

    2014-01-01

    We tested whether imagining another context during encoding would offset context-dependent forgetting. All participants studied a list of words in Context A. Participants who remained in Context A during the test recalled more than participants who were tested in another context (Context B), demonstrating the standard context-dependent forgetting…

  10. UV imprint fabrication of polymeric scales for optical rotary encoders

    NASA Astrophysics Data System (ADS)

    Jucius, D.; Grybas, I.; Grigaliūnas, V.; Mikolajūnas, M.; Lazauskas, A.

    2014-03-01

    Optical encoders are one of the most common displacement sensors. Scale gratings for such sensors are usually made of glass. However, polymers can offer several advantages such as lightweight, low cost fabrication and versatility in structures and grades. In this paper application of UV imprint technique to fabricate polymeric scale gratings for rotary encoders is reported. Experiments are performed by imprinting 3 μm layer of UV sensitive photopolymer coated on the substrate made of 200 μm PET film. Process of UV imprinting caused no problems concerned with mould contamination or sticking to the polymer. Optical microscopy and AFM measurements of replicated polymeric scales have demonstrated the absence of macro-defects and good reproducibility of Si mould features with lateral dimensions down to the order of hundreds of nanometers. Measurements of intensity distribution in transmitted diffraction pattern have showed an effective diffraction with most of the diffracted light intensity concentrated in the zero and first diffraction order as it is required for the application in optical rotary encoders employing interferential scanning principle. Commercialization of UV imprint technology would allow replacement of conventional glass scales at least in those applications where lightweight and low price of encoders are of great importance.

  11. Polypeptides having endoglucanase activity and polynucleotides encoding same

    DOEpatents

    Spodsberg, Nikolaj

    2016-02-23

    The present invention relates to isolated polypeptides having endoglucanase activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  12. The Neural Regions Sustaining Episodic Encoding and Recognition of Objects

    ERIC Educational Resources Information Center

    Hofer, Alex; Siedentopf, Christian M.; Ischebeck, Anja; Rettenbacher, Maria A.; Widschwendter, Christian G.; Verius, Michael; Golaszewski, Stefan M.; Koppelstaetter, Florian; Felber, Stephan; Wolfgang Fleischhacker, W.

    2007-01-01

    In this functional MRI experiment, encoding of objects was associated with activation in left ventrolateral prefrontal/insular and right dorsolateral prefrontal and fusiform regions as well as in the left putamen. By contrast, correct recognition of previously learned objects (R judgments) produced activation in left superior frontal, bilateral…

  13. Polypeptides having cellobiohydrolase activity and polynucleotides encoding same

    DOEpatents

    Stringer, Mary Ann; McBrayer, Brett

    2016-11-29

    The present invention relates to isolated polypeptides having cellobiohydrolase activity, catalytic domains, and cellulose binding domains and polynucleotides encoding the polypeptides, catalytic domains, and cellulose binding domains. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides, catalytic domains, or cellulose binding domains.

  14. Polypeptides having endoglucanase activity and polynucleotides encoding same

    DOEpatents

    Spodsberg, Nikolaj; Shagasi, Tarana

    2015-06-30

    The present invention relates to isolated polypeptides having endoglucanase activity, catalytic domains, cellulose binding domains and polynucleotides encoding the polypeptides, catalytic domains or cellulose binding domains. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides, catalytic domains or cellulose binding domains.

  15. The Role of Specificity in the Lexical Encoding of Participants

    ERIC Educational Resources Information Center

    Conklin, Kathy; Koenig, Jean-Pierre; Mauner, Gail

    2004-01-01

    In addition to information about phonology, morphology and syntax, lexical entries contain semantic information about participants (e.g., Agent). However, the traditional criteria for determining how much participant information is lexically encoded have proved unreliable. We have proposed two semantic criteria (obligatoriness and selectivity)…

  16. Polypeptides having endoglucanase activity and polynucleotides encoding same

    SciTech Connect

    Lopez de Leon, Alfredo; Rey, Michael

    2015-03-10

    The present invention relates to isolated polypeptides having endoglucanase activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  17. Polypeptides having cellulolytic enhancing activity and nucleic acids encoding same

    SciTech Connect

    Brown, Kimberly; Harris, Paul; Zaretsky, Elizabeth; Re, Edward; Vlasenko, Elena; McFarland, Keith; Lopez de Leon, Alfredo

    2012-10-16

    The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods for producing and using the polypeptides.

  18. Polypeptides having endoglucanase activity and polynucleotides encoding same

    DOEpatents

    Lopez de Leon, Alfredo; Rey, Michael

    2010-06-22

    The present invention relates to isolated polypeptides having endoglucanase activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  19. Polypeptides having cellulolytic enhancing activity and nucleic acids encoding same

    DOEpatents

    Brown, Kimberly; Harris, Paul; Zaretsky, Elizabeth; Re, Edward; Vlasenko, Elena; McFarland, Keith; Lopez de Leon, Alfredo

    2010-06-22

    The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods for producing and using the polypeptides.

  20. Polypeptides having xylanase activity and polynucleotides encoding same

    DOEpatents

    Lopez de Leon, Alfredo; Rey, Michael

    2015-01-27

    The present invention relates to isolated polypeptides having xylanase activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.