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Sample records for 1d transport code

  1. Recent Advances in the Modeling of the Transport of Two-Plasmon-Decay Electrons in the 1-D Hydrodynamic Code LILAC

    NASA Astrophysics Data System (ADS)

    Delettrez, J. A.; Myatt, J. F.; Yaakobi, B.

    2015-11-01

    The modeling of the fast-electron transport in the 1-D hydrodynamic code LILAC was modified because of the addition of cross-beam-energy-transfer (CBET) in implosion simulations. Using the old fast-electron with source model CBET results in a shift of the peak of the hard x-ray (HXR) production from the end of the laser pulse, as observed in experiments, to earlier in the pulse. This is caused by a drop in the laser intensity of the quarter-critical surface from CBET interaction at lower densities. Data from simulations with the laser plasma simulation environment (LPSE) code will be used to modify the source algorithm in LILAC. In addition, the transport model in LILAC has been modified to include deviations from the straight-line algorithm and non-specular reflection at the sheath to take into account the scattering from collisions and magnetic fields in the corona. Simulation results will be compared with HXR emissions from both room-temperature plastic and cryogenic target experiments. This material is based upon work supported by the Department of Energy National Nuclear Security Administration under Award Number DE-NA0001944.

  2. 1D fast coded aperture camera.

    PubMed

    Haw, Magnus; Bellan, Paul

    2015-04-01

    A fast (100 MHz) 1D coded aperture visible light camera has been developed as a prototype for imaging plasma experiments in the EUV/X-ray bands. The system uses printed patterns on transparency sheets as the masked aperture and an 80 channel photodiode array (9 V reverse bias) as the detector. In the low signal limit, the system has demonstrated 40-fold increase in throughput and a signal-to-noise gain of ≈7 over that of a pinhole camera of equivalent parameters. In its present iteration, the camera can only image visible light; however, the only modifications needed to make the system EUV/X-ray sensitive are to acquire appropriate EUV/X-ray photodiodes and to machine a metal masked aperture. PMID:25933861

  3. 1D fast coded aperture camera.

    PubMed

    Haw, Magnus; Bellan, Paul

    2015-04-01

    A fast (100 MHz) 1D coded aperture visible light camera has been developed as a prototype for imaging plasma experiments in the EUV/X-ray bands. The system uses printed patterns on transparency sheets as the masked aperture and an 80 channel photodiode array (9 V reverse bias) as the detector. In the low signal limit, the system has demonstrated 40-fold increase in throughput and a signal-to-noise gain of ≈7 over that of a pinhole camera of equivalent parameters. In its present iteration, the camera can only image visible light; however, the only modifications needed to make the system EUV/X-ray sensitive are to acquire appropriate EUV/X-ray photodiodes and to machine a metal masked aperture.

  4. Development of 1D Liner Compression Code for IDL

    NASA Astrophysics Data System (ADS)

    Shimazu, Akihisa; Slough, John; Pancotti, Anthony

    2015-11-01

    A 1D liner compression code is developed to model liner implosion dynamics in the Inductively Driven Liner Experiment (IDL) where FRC plasmoid is compressed via inductively-driven metal liners. The driver circuit, magnetic field, joule heating, and liner dynamics calculations are performed at each time step in sequence to couple these effects in the code. To obtain more realistic magnetic field results for a given drive coil geometry, 2D and 3D effects are incorporated into the 1D field calculation through use of correction factor table lookup approach. Commercial low-frequency electromagnetic fields solver, ANSYS Maxwell 3D, is used to solve the magnetic field profile for static liner condition at various liner radius in order to derive correction factors for the 1D field calculation in the code. The liner dynamics results from the code is verified to be in good agreement with the results from commercial explicit dynamics solver, ANSYS Explicit Dynamics, and previous liner experiment. The developed code is used to optimize the capacitor bank and driver coil design for better energy transfer and coupling. FRC gain calculations are also performed using the liner compression data from the code for the conceptual design of the reactor sized system for fusion energy gains.

  5. DNA charge transport: Moving beyond 1D

    NASA Astrophysics Data System (ADS)

    Zhang, Yuqi; Zhang, William B.; Liu, Chaoren; Zhang, Peng; Balaeff, Alexander; Beratan, David N.

    2016-10-01

    Charge transport across novel DNA junctions has been studied for several decades. From early attempts to move charge across DNA double crossover junctions to recent studies on DNA three-way junctions and G4 motifs, it is becoming clear that efficient cross-junction charge migration requires strong base-to-base electronic coupling at the junction, facilitated by favorable pi-stacking. We review recent progress toward the goal of manipulating and controlling charge transport through DNA junctions.

  6. FAA Smoke Transport Code

    SciTech Connect

    Domino, Stefan; Luketa-Hanlin, Anay; Gallegos, Carlos

    2006-10-27

    FAA Smoke Transport Code, a physics-based Computational Fluid Dynamics tool, which couples heat, mass, and momentum transfer, has been developed to provide information on smoke transport in cargo compartments with various geometries and flight conditions. The software package contains a graphical user interface for specification of geometry and boundary conditions, analysis module for solving the governing equations, and a post-processing tool. The current code was produced by making substantial improvements and additions to a code obtained from a university. The original code was able to compute steady, uniform, isothermal turbulent pressurization. In addition, a preprocessor and postprocessor were added to arrive at the current software package.

  7. FAA Smoke Transport Code

    2006-10-27

    FAA Smoke Transport Code, a physics-based Computational Fluid Dynamics tool, which couples heat, mass, and momentum transfer, has been developed to provide information on smoke transport in cargo compartments with various geometries and flight conditions. The software package contains a graphical user interface for specification of geometry and boundary conditions, analysis module for solving the governing equations, and a post-processing tool. The current code was produced by making substantial improvements and additions to a codemore » obtained from a university. The original code was able to compute steady, uniform, isothermal turbulent pressurization. In addition, a preprocessor and postprocessor were added to arrive at the current software package.« less

  8. Interaction of environmental contaminants with zebrafish organic anion transporting polypeptide, Oatp1d1 (Slco1d1)

    SciTech Connect

    Popovic, Marta; Zaja, Roko; Fent, Karl; Smital, Tvrtko

    2014-10-01

    Polyspecific transporters from the organic anion transporting polypeptide (OATP/Oatp) superfamily mediate the uptake of a wide range of compounds. In zebrafish, Oatp1d1 transports conjugated steroid hormones and cortisol. It is predominantly expressed in the liver, brain and testes. In this study we have characterized the transport of xenobiotics by the zebrafish Oatp1d1 transporter. We developed a novel assay for assessing Oatp1d1 interactors using the fluorescent probe Lucifer yellow and transient transfection in HEK293 cells. Our data showed that numerous environmental contaminants interact with zebrafish Oatp1d1. Oatp1d1 mediated the transport of diclofenac with very high affinity, followed by high affinity towards perfluorooctanesulfonic acid (PFOS), nonylphenol, gemfibrozil and 17α-ethinylestradiol; moderate affinity towards carbaryl, diazinon and caffeine; and low affinity towards metolachlor. Importantly, many environmental chemicals acted as strong inhibitors of Oatp1d1. A strong inhibition of Oatp1d1 transport activity was found by perfluorooctanoic acid (PFOA), chlorpyrifos-methyl, estrone (E1) and 17β-estradiol (E2), followed by moderate to low inhibition by diethyl phthalate, bisphenol A, 7-acetyl-1,1,3,4,4,6-hexamethyl-1,2,3,4 tetrahydronapthalene and clofibrate. In this study we identified Oatp1d1 as a first Solute Carrier (SLC) transporter involved in the transport of a wide range of xenobiotics in fish. Considering that Oatps in zebrafish have not been characterized before, our work on zebrafish Oatp1d1 offers important new insights on the understanding of uptake processes of environmental contaminants, and contributes to the better characterization of zebrafish as a model species. - Highlights: • We optimized a novel assay for determination of Oatp1d1 interactors • Oatp1d1 is the first SLC characterized fish xenobiotic transporter • PFOS, nonylphenol, diclofenac, EE2, caffeine are high affinity Oatp1d1substrates • PFOA, chlorpyrifos

  9. 1D-transport properties of single superconducting lead nanowires

    NASA Astrophysics Data System (ADS)

    Michotte, S.; Mátéfi-Tempfli, S.; Piraux, L.

    2003-09-01

    We report on the transport properties of single superconducting lead nanowires grown by an electrodeposition technique, embedded in a nanoporous track-etched polymer membrane. The nanowires are granular, have uniform diameter of ∼40 nm and a very large aspect ratio (∼500). The diameter of the nanowire is small enough to ensure a 1D superconducting regime in a wide temperature range below Tc. The non-zero resistance in the superconducting state and its variation caused by fluctuations of the superconducting order parameter were measured versus temperature, magnetic field, and applied DC current (or voltage). The current induced breakdowns in the V- I characteristics may be explained by the formation of phase slip centers. Moreover, DC voltage driven measurements reveal the existence of a new S-shape behavior near the formation of these phase slip centers.

  10. Quadratic Finite Element Method for 1D Deterministic Transport

    SciTech Connect

    Tolar, Jr., D R; Ferguson, J M

    2004-01-06

    In the discrete ordinates, or SN, numerical solution of the transport equation, both the spatial ({und r}) and angular ({und {Omega}}) dependences on the angular flux {psi}{und r},{und {Omega}}are modeled discretely. While significant effort has been devoted toward improving the spatial discretization of the angular flux, we focus on improving the angular discretization of {psi}{und r},{und {Omega}}. Specifically, we employ a Petrov-Galerkin quadratic finite element approximation for the differencing of the angular variable ({mu}) in developing the one-dimensional (1D) spherical geometry S{sub N} equations. We develop an algorithm that shows faster convergence with angular resolution than conventional S{sub N} algorithms.

  11. A New 2D-Transport, 1D-Diffusion Approximation of the Boltzmann Transport equation

    SciTech Connect

    Larsen, Edward

    2013-06-17

    The work performed in this project consisted of the derivation, implementation, and testing of a new, computationally advantageous approximation to the 3D Boltz- mann transport equation. The solution of the Boltzmann equation is the neutron flux in nuclear reactor cores and shields, but solving this equation is difficult and costly. The new “2D/1D” approximation takes advantage of a special geometric feature of typical 3D reactors to approximate the neutron transport physics in a specific (ax- ial) direction, but not in the other two (radial) directions. The resulting equation is much less expensive to solve computationally, and its solutions are expected to be sufficiently accurate for many practical problems. In this project we formulated the new equation, discretized it using standard methods, developed a stable itera- tion scheme for solving the equation, implemented the new numerical scheme in the MPACT code, and tested the method on several realistic problems. All the hoped- for features of this new approximation were seen. For large, difficult problems, the resulting 2D/1D solution is highly accurate, and is calculated about 100 times faster than a 3D discrete ordinates simulation.

  12. EFDC1D - A ONE DIMENSIONAL HYDRODYNAMIC AND SEDIMENT TRANSPORT MODEL FOR RIVER AND STREAM NETWORKS: MODEL THEORY AND USERS GUIDE

    EPA Science Inventory

    This technical report describes the new one-dimensional (1D) hydrodynamic and sediment transport model EFDC1D. This model that can be applied to stream networks. The model code and two sample data sets are included on the distribution CD. EFDC1D can simulate bi-directional unstea...

  13. Molecular characterization of zebrafish Oatp1d1 (Slco1d1), a novel organic anion-transporting polypeptide.

    PubMed

    Popovic, Marta; Zaja, Roko; Fent, Karl; Smital, Tvrtko

    2013-11-22

    The organic anion-transporting polypeptide (OATP/Oatp) superfamily includes a group of polyspecific transporters that mediate transport of large amphipathic, mostly anionic molecules across cell membranes of eukaryotes. OATPs/Oatps are involved in the disposition and elimination of numerous physiological and foreign compounds. However, in non-mammalian species, the functional properties of Oatps remain unknown. We aimed to elucidate the role of Oatp1d1 in zebrafish to gain insights into the functional and structural evolution of the OATP1/Oatp1 superfamily. We show that diversification of the OATP1/Oatp1 family occurs after the emergence of jawed fish and that the OATP1A/Oatp1a and OATP1B/Oatp1b subfamilies appeared at the root of tetrapods. The Oatp1d subfamily emerged in teleosts and is absent in tetrapods. The zebrafish Oatp1d1 is similar to mammalian OATP1A/Oatp1a and OATP1B/Oatp1b members, with the main physiological role in transport and balance of steroid hormones. Oatp1d1 activity is dependent upon pH gradient, which could indicate bicarbonate exchange as a mode of transport. Our analysis of evolutionary conservation and structural properties revealed that (i) His-79 in intracellular loop 3 is conserved within OATP1/Oatp1 family and is crucial for the transport activity; (ii) N-glycosylation impacts membrane targeting and is conserved within the OATP1/Oatp1 family with Asn-122, Asn-133, Asn-499, and Asn-512 residues involved; (iii) the evolutionarily conserved cholesterol recognition interaction amino acid consensus motif is important for membrane localization; and (iv) Oatp1d1 is present in dimeric and possibly oligomeric form in the cell membrane. In conclusion, we describe the first detailed characterization of a new Oatp transporter in zebrafish, offering important insights into the functional evolution of the OATP1/Oatp1 family and the physiological role of Oatp1d1.

  14. Evaluation of the Transport of Natural Radioactive Materials in Large Lysimeters Using Hydrus-1D

    NASA Astrophysics Data System (ADS)

    Pontedeiro, E.; Cipriani, M.; van Genuchten, M.; Simunek, J.

    2007-12-01

    The mining industry in Brazil often uses raw materials that contain relatively high concentrations of naturally occurring radioactive materials (referred to as NORM). Ores of relatively low grade typically are used to produce refined metals of high purity (e.g., Nb, Ta, Sn, and Au) using pyrometallurgic processes. The final waste is a slag rich in natural radioactive contaminants (the U and Th decay series), which are then usually deposited in industrial landfills. To study the long-term fate and transport of radionuclides leached from the NORM wastes, several large (3 m deep) lysimeters were constructed at the Pocos de Caldas Laboratory of the Brazilian Nuclear Energy Commision (CNEN). The lysimeters were packed with surface soils and slags from one of the mining sites in South East Brazil. Main purpose of our lysimeter experiments was to follow the dissolution and transport of radionuclides from the slags under natural climatic conditions. Leaching rates and radionuclide concentrations of the effluent were observed during a three-year time period. A variety of physical and chemical properties of the soils and slags (including laboratory batch equilibrium sorption values) were also determined. The data were analyzed using several computer software packages, including the STANMOD code for analytical modeling of decay chain transport during steady flow, the HYDRUS-1D code for variably-saturated flow and the transport of multiple solutes, and the HP1 code for a more comprehensive analysis of the geochemistry involved. In this presentation we describe the experimental setup and provide preliminary results of the theoretical analyses, especially those using HYDRUS-1D.

  15. Nonlinear simulations of combustion instabilities with a quasi-1D Navier-Stokes code

    NASA Astrophysics Data System (ADS)

    Haugen, Nils Erland L.; Langørgen, Øyvind; Sannan, Sigurd

    2011-11-01

    As lean premixed combustion systems are more susceptible to combustion instabilities than non-premixed systems, there is an increasing demand for improved numerical design tools that can predict the occurrence of combustion instabilities with high accuracy. The inherent nonlinearities in combustion instabilities can be of crucial importance, and we here propose an approach in which the one-dimensional (1D) Navier-Stokes and scalar transport equations are solved for geometries of variable cross-section. The focus is on attached flames, and for this purpose a new phenomenological model for the unsteady heat release from a flame front is introduced. In the attached flame method (AFM) the heat release occurs over the full length of the flame. The nonlinear code with the use of the AFM approach is validated against analytical results and against an experimental study of thermoacoustic instabilities in oxy-fuel flames by Ditaranto and Hals [Combustion and Flame 146 (2006) 493-512]. The numerical simulations are in accordance with the experimental measurements and the analytical results and both the frequencies and the amplitudes of the resonant acoustic pressure modes are reproduced with good accuracy.

  16. Toward a consistent use of overshooting parametrizations in 1D stellar evolution codes

    NASA Astrophysics Data System (ADS)

    Viallet, M.; Meakin, C.; Prat, V.; Arnett, D.

    2015-08-01

    Several parametrizations for overshooting in 1D stellar evolution calculations coexist in the literature. These parametrizations are used somewhat arbitrarily in stellar evolution codes, based on what works best for a given problem or even for the historical reasons related to the development of each code. We point out that these different parametrizations correspond to different physical regimes of overshooting, depending on whether the effects of radiation are dominant, marginal, or negligible. Our analysis is based on previously published theoretical results, as well as on multidimensional hydrodynamical simulations of stellar convection where the interaction between the convective region and a stably stratified region is observed. Although the underlying hydrodynamical processes are the same, the outcome of the overshooting process is profoundly affected by radiative effects. Using a simple picture of the scales involved in the overshooting process, we show how three regimes are obtained, depending on the importance of radiative effects. These three regimes correspond to the different behaviors observed in hydrodynamical simulations so far and to the three types of parametrizations used in 1D codes. We suggest that the existing parametrizations for overshooting should coexist in 1D stellar evolution codes and should be applied consistently at convective boundaries depending on the local physical conditions.

  17. Validation of 1-D transport and sawtooth models for ITER

    SciTech Connect

    Connor, J.W.; Turner, M.F.; Attenberger, S.E.; Houlberg, W.A.

    1996-12-31

    In this paper the authors describe progress on validating a number of local transport models by comparing their predictions with relevant experimental data from a range of tokamaks in the ITER profile database. This database, the testing procedure and results are discussed. In addition a model for sawtooth oscillations is used to investigate their effect in an ITER plasma with alpha-particles.

  18. A Zonal Climate Model for the 1-D Mars Evolution Code: Explaining Meridiani Planum.

    NASA Astrophysics Data System (ADS)

    Manning, C. V.; McKay, C. P.; Zahnle, K. J.

    2005-12-01

    Recent MER Opportunity observations suggest there existed an extensive body of shallow water in the present Meridiani Planum during the late Noachian [1]. Observations of roughly contemporaneous valley networks show little net erosion [2]. Hypsometric analysis [3] finds that martian drainage basins are similar to terrestrial drainage basins in very arid regions. The immaturity of martian drainage basins suggests they were formed by infrequent fluvial action. If similar fluvial discharges are responsible for the laminations in the salt-bearing outcrops of Meridiani Planum, their explanation may require a climate model based on surface thermal equilibrium with diurnally averaged temperatures greater than freezing. In the context of Mars' chaotic obliquity, invoking a moderately thick atmosphere with seasonal insolation patterns may uncover the conditions under which the outcrops formed. We compounded a 1-D model of the evolution of Mars' inventories of CO2 over its lifetime called the Mars Evolution Code (MEC) [4]. We are assembling a zonal climate model that includes meridional heat transport, heat conduction to/from the regolith, latent heat deposition, and an albedo distribution based on the depositional patterns of ices. Since water vapor is an important greenhouse gas, and whose ice affects the albedo, we must install a full hydrological cycle. This requires a thermal model of the regolith to model diffusion of water vapor to/from a permafrost layer. Our model carries obliquity and eccentricity distributions consistent with Laskar et al. [5], so we will be able to model the movement of the ice cap with changes in obliquity. The climate model will be used to investigate the conditions under which ponded water could have occurred in the late Noachian, thus supplying a constraint on the free inventory of CO2 at that time. Our evolution code can then investigate Hesperian and Amazonian climates. The model could also be used to understand evidence of recent climate

  19. Morphodynamics and sediment tracers in 1-D (MAST-1D): 1-D sediment transport that includes exchange with an off-channel sediment reservoir

    NASA Astrophysics Data System (ADS)

    Lauer, J. Wesley; Viparelli, Enrica; Piégay, Hervé

    2016-07-01

    Bed material transported in geomorphically active gravel bed rivers often has a local source at nearby eroding banks and ends up sequestered in bars not far downstream. However, most 1-D numerical models for gravel transport assume that gravel originates from and deposits on the channel bed. In this paper, we present a 1-D framework for simulating morphodynamic evolution of bed elevation and size distribution in a gravel-bed river that actively exchanges sediment with its floodplain, which is represented as an off-channel sediment reservoir. The model is based on the idea that sediment enters the channel at eroding banks whose elevation depends on total floodplain sediment storage and on the average elevation of the floodplain relative to the channel bed. Lateral erosion of these banks occurs at a specified rate that can represent either net channel migration or channel widening. Transfer of material out of the channel depends on a typical bar thickness and a specified lateral exchange rate due either to net channel migration or narrowing. The model is implemented using an object oriented framework that allows users to explore relationships between bank supply, bed structure, and lateral change rates. It is applied to a ∼50-km reach of the Ain River, France, that experienced significant reduction in sediment supply due to dam construction during the 20th century. Results are strongly sensitive to lateral exchange rates, showing that in this reach, the supply of sand and gravel at eroding banks and the sequestration of gravel in point bars can have strong influence on overall reach-scale sediment budgets.

  20. Stability and accuracy of 3D neutron transport simulations using the 2D/1D method in MPACT

    DOE PAGES

    Collins, Benjamin; Stimpson, Shane; Kelley, Blake W.; Young, Mitchell T. H.; Kochunas, Brendan; Graham, Aaron; Larsen, Edward W.; Downar, Thomas; Godfrey, Andrew

    2016-08-25

    We derived a consistent “2D/1D” neutron transport method from the 3D Boltzmann transport equation, to calculate fuel-pin-resolved neutron fluxes for realistic full-core Pressurized Water Reactor (PWR) problems. The 2D/1D method employs the Method of Characteristics to discretize the radial variables and a lower order transport solution to discretize the axial variable. Our paper describes the theory of the 2D/1D method and its implementation in the MPACT code, which has become the whole-core deterministic neutron transport solver for the Consortium for Advanced Simulations of Light Water Reactors (CASL) core simulator VERA-CS. We also performed several applications on both leadership-class and industry-classmore » computing clusters. Results are presented for whole-core solutions of the Watts Bar Nuclear Power Station Unit 1 and compared to both continuous-energy Monte Carlo results and plant data.« less

  1. Mapping of the serotonin 5-HT{sub 1D{alpha}} autoreceptor gene (HTR1D) on chromosome 1 using a silent polymorphism in the coding region

    SciTech Connect

    Ozaki, N.; Lappalainen, J.; Linnoila, M.

    1995-04-24

    Serotonin (5-HT){sub ID} receptors are 5-HT release-regulating autoreceptors in the human brain. Abnormalities in brain 5-HT function have been hypothesized in the pathophysiology of various psychiatric disorders, including obsessive-compulsive disorder, autism, mood disorders, eating disorders, impulsive violent behavior, and alcoholism. Thus, mutations occurring in 5-HT autoreceptors may cause or increase the vulnerability to any of these conditions. 5-HT{sub 1D{alpha}} and 5-HT{sub 1D{Beta}} subtypes have been previously localized to chromosomes 1p36.3-p34.3 and 6q13, respectively, using rodent-human hybrids and in situ localization. In this communication, we report the detection of a 5-HT{sub 1D{alpha}} receptor gene polymorphism by single strand conformation polymorphism (SSCP) analysis of the coding sequence. The polymorphism was used for fine scale linkage mapping of 5-HT{sub 1D{alpha}} on chromosome 1. This polymorphism should also be useful for linkage studies in populations and in families. Our analysis also demonstrates that functionally significant coding sequence variants of the 5-HT{sub 1D{alpha}} are probably not abundant either among alcoholics or in the general population. 14 refs., 1 fig., 1 tab.

  2. Numerical Modeling of Imploding Plasma liners Using the 1D Radiation-Hydrodynamics Code HELIOS

    NASA Astrophysics Data System (ADS)

    Davis, J. S.; Hanna, D. S.; Awe, T. J.; Hsu, S. C.; Stanic, M.; Cassibry, J. T.; Macfarlane, J. J.

    2010-11-01

    The Plasma Liner Experiment (PLX) is attempting to form imploding plasma liners to reach 0.1 Mbar upon stagnation, via 30--60 spherically convergent plasma jets. PLX is partly motivated by the desire to develop a standoff driver for magneto-inertial fusion. The liner density, atomic makeup, and implosion velocity will help determine the maximum pressure that can be achieved. This work focuses on exploring the effects of atomic physics and radiation on the 1D liner implosion and stagnation dynamics. For this reason, we are using Prism Computational Science's 1D Lagrangian rad-hydro code HELIOS, which has both equation of state (EOS) table-lookup and detailed configuration accounting (DCA) atomic physics modeling. By comparing a series of PLX-relevant cases proceeding from ideal gas, to EOS tables, to DCA treatments, we aim to identify how and when atomic physics effects are important for determining the peak achievable stagnation pressures. In addition, we present verification test results as well as brief comparisons to results obtained with RAVEN (1D radiation-MHD) and SPHC (smoothed particle hydrodynamics).

  3. Roles of TBC1D1 and TBC1D4 in insulin- and exercise-stimulated glucose transport of skeletal muscle

    PubMed Central

    Cartee, Gregory D.

    2014-01-01

    This review focuses on two paralogue Rab GTPase activating proteins known as TBC1D1 Tre-2/BUB2/cdc 1 domain family (TBC1D) 1 and TBC1D4 (also called Akt Substrate of 160 kDa, AS160) and their roles in controlling skeletal muscle glucose transport in response to the independent and combined effects of insulin and exercise. Convincing evidence implicates Akt2-dependent TBC1D4 phosphorylation on T642 as a key part of the mechanism for insulin-stimulated glucose uptake by skeletal muscle. TBC1D1 phosphorylation on several insulin-responsive sites (including T596, a site corresponding to T642 in TBC1D4) does not appear to be essential for in vivo insulin-stimulated glucose uptake by skeletal muscle. In vivo exercise or ex vivo contraction of muscle result in greater TBC1D1 phosphorylation on S237 that is likely to be secondary to increased AMP-activated protein kinase activity and potentially important for contraction-stimulated glucose uptake. Several studies that evaluated both normal and insulin-resistant skeletal muscle stimulated with a physiological insulin concentration after a single exercise session found that greater post-exercise insulin-stimulated glucose uptake was accompanied by greater TBC1D4 phosphorylation on several sites. In contrast, enhanced post-exercise insulin sensitivity was not accompanied by greater insulin-stimulated TBC1D1 phosphorylation. The mechanism for greater TBC1D4 phosphorylation in insulin-stimulated muscles after acute exercise is uncertain, and a causal link between enhanced TBC1D4 phosphorylation and increased post-exercise insulin sensitivity has yet to be established. In summary, TBC1D1 and TBC1D4 have important, but distinct roles in regulating muscle glucose transport in response to insulin and exercise. PMID:25280670

  4. TCTEX1D2 mutations underlie Jeune asphyxiating thoracic dystrophy with impaired retrograde intraflagellar transport.

    PubMed

    Schmidts, Miriam; Hou, Yuqing; Cortés, Claudio R; Mans, Dorus A; Huber, Celine; Boldt, Karsten; Patel, Mitali; van Reeuwijk, Jeroen; Plaza, Jean-Marc; van Beersum, Sylvia E C; Yap, Zhi Min; Letteboer, Stef J F; Taylor, S Paige; Herridge, Warren; Johnson, Colin A; Scambler, Peter J; Ueffing, Marius; Kayserili, Hulya; Krakow, Deborah; King, Stephen M; Beales, Philip L; Al-Gazali, Lihadh; Wicking, Carol; Cormier-Daire, Valerie; Roepman, Ronald; Mitchison, Hannah M; Witman, George B

    2015-01-01

    The analysis of individuals with ciliary chondrodysplasias can shed light on sensitive mechanisms controlling ciliogenesis and cell signalling that are essential to embryonic development and survival. Here we identify TCTEX1D2 mutations causing Jeune asphyxiating thoracic dystrophy with partially penetrant inheritance. Loss of TCTEX1D2 impairs retrograde intraflagellar transport (IFT) in humans and the protist Chlamydomonas, accompanied by destabilization of the retrograde IFT dynein motor. We thus define TCTEX1D2 as an integral component of the evolutionarily conserved retrograde IFT machinery. In complex with several IFT dynein light chains, it is required for correct vertebrate skeletal formation but may be functionally redundant under certain conditions. PMID:26044572

  5. TCTEX1D2 mutations underlie Jeune asphyxiating thoracic dystrophy with impaired retrograde intraflagellar transport

    PubMed Central

    Schmidts, Miriam; Hou, Yuqing; Cortés, Claudio R.; Mans, Dorus A.; Huber, Celine; Boldt, Karsten; Patel, Mitali; van Reeuwijk, Jeroen; Plaza, Jean-Marc; van Beersum, Sylvia E. C.; Yap, Zhi Min; Letteboer, Stef J. F.; Taylor, S. Paige; Herridge, Warren; Johnson, Colin A.; Scambler, Peter J.; Ueffing, Marius; Kayserili, Hulya; Krakow, Deborah; King, Stephen M.; Beales, Philip L.; Al-Gazali, Lihadh; Wicking, Carol; Cormier-Daire, Valerie; Roepman, Ronald; Mitchison, Hannah M.; Witman, George B.; Al-Turki, Saeed; Anderson, Carl; Anney, Richard; Antony, Dinu; Asimit, Jennifer; Ayub, Mohammad; Barrett, Jeff; Barroso, Inês; Bentham, Jamie; Bhattacharya, Shoumo; Blackwood, Douglas; Bobrow, Martin; Bochukova, Elena; Bolton, Patrick; Boustred, Chris; Breen, Gerome; Brion, Marie-Jo; Brown, Andrew; Calissano, Mattia; Carss, Keren; Chatterjee, Krishna; Chen, Lu; Cirak, Sebhattin; Clapham, Peter; Clement, Gail; Coates, Guy; Collier, David; Cosgrove, Catherine; Cox, Tony; Craddock, Nick; Crooks, Lucy; Curran, Sarah; Daly, Allan; Danecek, Petr; Smith, George Davey; Day-Williams, Aaron; Day, Ian; Durbin, Richard; Edkins, Sarah; Ellis, Peter; Evans, David; Farooqi, I. Sadaf; Fatemifar, Ghazaleh; Fitzpatrick, David; Flicek, Paul; Floyd, Jamie; Foley, A. Reghan; Franklin, Chris; Futema, Marta; Gallagher, Louise; Gaunt, Tom; Geschwind, Daniel; Greenwood, Celia; Grozeva, Detelina; Guo, Xiaosen; Gurling, Hugh; Hart, Deborah; Hendricks, Audrey; Holmans, Peter; Huang, Jie; Humphries, Steve E.; Hurles, Matt; Hysi, Pirro; Jackson, David; Jamshidi, Yalda; Jewell, David; Chris, Joyce; Kaye, Jane; Keane, Thomas; Kemp, John; Kennedy, Karen; Kent, Alastair; Kolb-Kokocinski, Anja; Lachance, Genevieve; Langford, Cordelia; Lee, Irene; Li, Rui; Li, Yingrui; Ryan, Liu; Lönnqvist, Jouko; Lopes, Margarida; MacArthur, Daniel G.; Massimo, Mangino; Marchini, Jonathan; Maslen, John; McCarthy, Shane; McGuffin, Peter; McIntosh, Andrew; McKechanie, Andrew; McQuillin, Andrew; Memari, Yasin; Metrustry, Sarah; Min, Josine; Moayyeri, Alireza; Morris, James; Muddyman, Dawn; Muntoni, Francesco; Northstone, Kate; O'Donovan, Michael; O'Rahilly, Stephen; Onoufriadis, Alexandros; Oualkacha, Karim; Owen, Michael; Palotie, Aarno; Panoutsopoulou, Kalliope; Parker, Victoria; Parr, Jeremy; Paternoster, Lavinia; Paunio, Tiina; Payne, Felicity; Perry, John; Pietilainen, Olli; Plagnol, Vincent; Quail, Michael A.; Quaye, Lydia; Raymond, Lucy; Rehnström, Karola; Brent Richards, J.; Ring, Sue; Ritchie, Graham R S; Savage, David B.; Schoenmakers, Nadia; Semple, Robert K.; Serra, Eva; Shihab, Hashem; Shin, So-Youn; Skuse, David; Small, Kerrin; Smee, Carol; Soler, Artigas María; Soranzo, Nicole; Southam, Lorraine; Spector, Tim; St Pourcain, Beate; St. Clair, David; Stalker, Jim; Surdulescu, Gabriela; Suvisaari, Jaana; Tachmazidou, Ioanna; Tian, Jing; Timpson, Nic; Tobin, Martin; Valdes, Ana; van Kogelenberg, Margriet; Vijayarangakannan, Parthiban; Wain, Louise; Walter, Klaudia; Wang, Jun; Ward, Kirsten; Wheeler, Ellie; Whittall, Ros; Williams, Hywel; Williamson, Kathy; Wilson, Scott G.; Wong, Kim; Whyte, Tamieka; ChangJiang, Xu; Zeggini, Eleftheria; Zhang, Feng; Zheng, Hou-Feng

    2015-01-01

    The analysis of individuals with ciliary chondrodysplasias can shed light on sensitive mechanisms controlling ciliogenesis and cell signalling that are essential to embryonic development and survival. Here we identify TCTEX1D2 mutations causing Jeune asphyxiating thoracic dystrophy with partially penetrant inheritance. Loss of TCTEX1D2 impairs retrograde intraflagellar transport (IFT) in humans and the protist Chlamydomonas, accompanied by destabilization of the retrograde IFT dynein motor. We thus define TCTEX1D2 as an integral component of the evolutionarily conserved retrograde IFT machinery. In complex with several IFT dynein light chains, it is required for correct vertebrate skeletal formation but may be functionally redundant under certain conditions. PMID:26044572

  6. Significance of flow clustering and sequencing on sediment transport: 1D sediment transport modelling

    NASA Astrophysics Data System (ADS)

    Hassan, Kazi; Allen, Deonie; Haynes, Heather

    2016-04-01

    This paper considers 1D hydraulic model data on the effect of high flow clusters and sequencing on sediment transport. Using observed flow gauge data from the River Caldew, England, a novel stochastic modelling approach was developed in order to create alternative 50 year flow sequences. Whilst the observed probability density of gauge data was preserved in all sequences, the order in which those flows occurred was varied using the output from a Hidden Markov Model (HMM) with generalised Pareto distribution (GP). In total, one hundred 50 year synthetic flow series were generated and used as the inflow boundary conditions for individual flow series model runs using the 1D sediment transport model HEC-RAS. The model routed graded sediment through the case study river reach to define the long-term morphological changes. Comparison of individual simulations provided a detailed understanding of the sensitivity of channel capacity to flow sequence. Specifically, each 50 year synthetic flow sequence was analysed using a 3-month, 6-month or 12-month rolling window approach and classified for clusters in peak discharge. As a cluster is described as a temporal grouping of flow events above a specified threshold, the threshold condition used herein is considered as a morphologically active channel forming discharge event. Thus, clusters were identified for peak discharges in excess of 10%, 20%, 50%, 100% and 150% of the 1 year Return Period (RP) event. The window of above-peak flows also required cluster definition and was tested for timeframes 1, 2, 10 and 30 days. Subsequently, clusters could be described in terms of the number of events, maximum peak flow discharge, cumulative flow discharge and skewness (i.e. a description of the flow sequence). The model output for each cluster was analysed for the cumulative flow volume and cumulative sediment transport (mass). This was then compared to the total sediment transport of a single flow event of equivalent flow volume

  7. Epitaxial 1D electron transport layers for high-performance perovskite solar cells

    NASA Astrophysics Data System (ADS)

    Han, Gill Sang; Chung, Hyun Suk; Kim, Dong Hoe; Kim, Byeong Jo; Lee, Jin-Wook; Park, Nam-Gyu; Cho, In Sun; Lee, Jung-Kun; Lee, Sangwook; Jung, Hyun Suk

    2015-09-01

    We demonstrate high-performance perovskite solar cells with excellent electron transport properties using a one-dimensional (1D) electron transport layer (ETL). The 1D array-based ETL is comprised of 1D SnO2 nanowires (NWs) array grown on a F:SnO2 transparent conducting oxide substrate and rutile TiO2 nanoshells epitaxially grown on the surface of the 1D SnO2 NWs. The optimized devices show more than 95% internal quantum yield at 750 nm, and a power conversion efficiency (PCE) of 14.2%. The high quantum yield is attributed to dramatically enhanced electron transport in the epitaxial TiO2 layer, compared to that in conventional nanoparticle-based mesoporous TiO2 (mp-TiO2) layers. In addition, the open space in the 1D array-based ETL increases the prevalence of uniform TiO2/perovskite junctions, leading to reproducible device performance with a high fill factor. This work offers a method to achieve reproducible, high-efficiency perovskite solar cells with high-speed electron transport.We demonstrate high-performance perovskite solar cells with excellent electron transport properties using a one-dimensional (1D) electron transport layer (ETL). The 1D array-based ETL is comprised of 1D SnO2 nanowires (NWs) array grown on a F:SnO2 transparent conducting oxide substrate and rutile TiO2 nanoshells epitaxially grown on the surface of the 1D SnO2 NWs. The optimized devices show more than 95% internal quantum yield at 750 nm, and a power conversion efficiency (PCE) of 14.2%. The high quantum yield is attributed to dramatically enhanced electron transport in the epitaxial TiO2 layer, compared to that in conventional nanoparticle-based mesoporous TiO2 (mp-TiO2) layers. In addition, the open space in the 1D array-based ETL increases the prevalence of uniform TiO2/perovskite junctions, leading to reproducible device performance with a high fill factor. This work offers a method to achieve reproducible, high-efficiency perovskite solar cells with high-speed electron transport

  8. Acceleration of a Monte Carlo radiation transport code

    SciTech Connect

    Hochstedler, R.D.; Smith, L.M.

    1996-03-01

    Execution time for the Integrated TIGER Series (ITS) Monte Carlo radiation transport code has been reduced by careful re-coding of computationally intensive subroutines. Three test cases for the TIGER (1-D slab geometry), CYLTRAN (2-D cylindrical geometry), and ACCEPT (3-D arbitrary geometry) codes were identified and used to benchmark and profile program execution. Based upon these results, sixteen top time-consuming subroutines were examined and nine of them modified to accelerate computations with equivalent numerical output to the original. The results obtained via this study indicate that speedup factors of 1.90 for the TIGER code, 1.67 for the CYLTRAN code, and 1.11 for the ACCEPT code are achievable. {copyright} {ital 1996 American Institute of Physics.}

  9. Verification tests for contaminant transport codes

    SciTech Connect

    Rowe, R.K.; Nadarajah, P.

    1996-12-31

    The importance of verifying contaminant transport codes and the techniques that may be used in this verification process are discussed. Commonly used contaminant transport codes are characterized as belonging to one of several types or classes of solution, such as analytic, finite layer, boundary element, finite difference and finite element. Both the level of approximation and the solution methodology should be verified for each contaminant transport code. One powerful method that may be used in contaminant transport code verification is cross-checking (benchmarking) with other codes. This technique is used to check the results of codes from one solution class with the results of codes from another solution class. In this paper cross-checking is performed for three classes of solution; these are, analytic, finite layer, and finite element.

  10. Benchmarks and models for 1-D radiation transport in stochastic participating media

    SciTech Connect

    Miller, D S

    2000-08-21

    Benchmark calculations for radiation transport coupled to a material temperature equation in a 1-D slab and 1-D spherical geometry binary random media are presented. The mixing statistics are taken to be homogeneous Markov statistics in the 1-D slab but only approximately Markov statistics in the 1-D sphere. The material chunk sizes are described by Poisson distribution functions. The material opacities are first taken to be constant and then allowed to vary as a strong function of material temperature. Benchmark values and variances for time evolution of the ensemble average of material temperature energy density and radiation transmission are computed via a Monte Carlo type method. These benchmarks are used as a basis for comparison with three other approximate methods of solution. One of these approximate methods is simple atomic mix. The second approximate model is an adaptation of what is commonly called the Levermore-Pomraning model and which is referred to here as the standard model. It is shown that recasting the temperature coupling as a type of effective scattering can be useful in formulating the third approximate model, an adaptation of a model due to Su and Pomraning which attempts to account for the effects of scattering in a stochastic context. This last adaptation shows consistent improvement over both the atomic mix and standard models when used in the 1-D slab geometry but shows limited improvement in the 1-D spherical geometry. Benchmark values are also computed for radiation transmission from the 1-D sphere without material heating present. This is to evaluate the performance of the standard model on this geometry--something which has never been done before. All of the various tests demonstrate the importance of stochastic structure on the solution. Also demonstrated are the range of usefulness and limitations of a simple atomic mix formulation.

  11. Discontinuous Galerkin finite element method applied to the 1-D spherical neutron transport equation

    SciTech Connect

    Machorro, Eric . E-mail: machorro@amath.washington.edu

    2007-04-10

    Discontinuous Galerkin finite element methods are used to estimate solutions to the non-scattering 1-D spherical neutron transport equation. Various trial and test spaces are compared in the context of a few sample problems whose exact solution is known. Certain trial spaces avoid unphysical behaviors that seem to plague other methods. Comparisons with diamond differencing and simple corner-balancing are presented to highlight these improvements.

  12. Exponentially-convergent Monte Carlo for the 1-D transport equation

    SciTech Connect

    Peterson, J. R.; Morel, J. E.; Ragusa, J. C.

    2013-07-01

    We define a new exponentially-convergent Monte Carlo method for solving the one-speed 1-D slab-geometry transport equation. This method is based upon the use of a linear discontinuous finite-element trial space in space and direction to represent the transport solution. A space-direction h-adaptive algorithm is employed to restore exponential convergence after stagnation occurs due to inadequate trial-space resolution. This methods uses jumps in the solution at cell interfaces as an error indicator. Computational results are presented demonstrating the efficacy of the new approach. (authors)

  13. Decay-ratio calculation in the frequency domain with the LAPUR code using 1D-kinetics

    SciTech Connect

    Munoz-Cobo, J. L.; Escriva, A.; Garcia, C.; Berna, C.

    2012-07-01

    This paper deals with the problem of computing the Decay Ratio in the frequency domain codes as the LAPUR code. First, it is explained how to calculate the feedback reactivity in the frequency domain using slab-geometry i.e. 1D kinetics, also we show how to perform the coupling of the 1D kinetics with the thermal-hydraulic part of the LAPUR code in order to obtain the reactivity feedback coefficients for the different channels. In addition, we show how to obtain the reactivity variation in the complex domain by solving the eigenvalue equation in the frequency domain and we compare this result with the reactivity variation obtained in first order perturbation theory using the 1D neutron fluxes of the base case. Because LAPUR works in the linear regime, it is assumed that in general the perturbations are small. There is also a section devoted to the reactivity weighting factors used to couple the reactivity contribution from the different channels to the reactivity of the entire reactor core in point kinetics and 1D kinetics. Finally we analyze the effects of the different approaches on the DR value. (authors)

  14. Experimental investigations of heat transport dynamics in a 1D porous medium column

    NASA Astrophysics Data System (ADS)

    Cherubini, Claudia; Pastore, Nicola; Giasi, Concetta I.; Allegretti, Nicoletta M.

    2016-04-01

    A laboratory physical model has been set up to analyse the forced convective flow and the related heat transport dynamics through a 1d porous medium column. In particular, the experiments regard the observation of thermal breakthrough curves obtained through a continuous flow injection in correspondence of eight thermocouple positioned uniformly along a thermally isolated column of porous medium. The experiment has been conducted for different flow rates in order to investigate the critical issues regarding heat transport phenomena such as the influence of non-linear flow regime, the relationship between the thermal dispersion with the flow velocity and the validity of the local thermal equilibrium assumption between the fluid and solid phase. The results emphasize the magnitude of the errors of the commonly used assumptions in the numerical modelling of heat transport.

  15. Long distance transport of ultracold atoms using a 1D optical lattice

    NASA Astrophysics Data System (ADS)

    Schmid, Stefan; Thalhammer, Gregor; Winkler, Klaus; Lang, Florian; Hecker Denschlag, Johannes

    2006-08-01

    We study the horizontal transport of ultracold atoms over macroscopic distances of up to 20 cm with a moving 1D optical lattice. By using an optical Bessel beam to form the optical lattice, we can achieve nearly homogeneous trapping conditions over the full transport length, which is crucial in order to hold the atoms against gravity for such a wide range. Fast transport velocities of up to 6 m s-1 (corresponding to about 1100 photon recoils) and accelerations of up to 2600 m s-2 are reached. Even at high velocities the momentum of the atoms is precisely defined with an uncertainty of less than one photon recoil. This allows for construction of an atom catapult with high kinetic energy resolution, which might have applications in novel collision experiments.

  16. Modeling anomalous radial transport in kinetic transport codes

    NASA Astrophysics Data System (ADS)

    Bodi, K.; Krasheninnikov, S. I.; Cohen, R. H.; Rognlien, T. D.

    2009-11-01

    Anomalous transport is typically the dominant component of the radial transport in magnetically confined plasmas, where the physical origin of this transport is believed to be plasma turbulence. A model is presented for anomalous transport that can be used in continuum kinetic edge codes like TEMPEST, NEO and the next-generation code being developed by the Edge Simulation Laboratory. The model can also be adapted to particle-based codes. It is demonstrated that the model with a velocity-dependent diffusion and convection terms can match a diagonal gradient-driven transport matrix as found in contemporary fluid codes, but can also include off-diagonal effects. The anomalous transport model is also combined with particle drifts and a particle/energy-conserving Krook collision operator to study possible synergistic effects with neoclassical transport. For the latter study, a velocity-independent anomalous diffusion coefficient is used to mimic the effect of long-wavelength ExB turbulence.

  17. In-facility transport code review

    SciTech Connect

    Spore, J.W.; Boyack, B.E.; Bohl, W.R.

    1996-07-01

    The following computer codes were reviewed by the In-Facility Transport Working Group for application to the in-facility transport of radioactive aerosols, flammable gases, and/or toxic gases: (1) CONTAIN, (2) FIRAC, (3) GASFLOW, (4) KBERT, and (5) MELCOR. Based on the review criteria as described in this report and the versions of each code available at the time of the review, MELCOR is the best code for the analysis of in-facility transport when multidimensional effects are not significant. When multi-dimensional effects are significant, GASFLOW should be used.

  18. Transient 1D transport equation simulated by a mixed Green element formulation

    NASA Astrophysics Data System (ADS)

    Taigbenu, Akpofure Efemena; Onyejekwe, Okey Oseloka

    1997-08-01

    New discrete element equations or coefficients are derived for the transient 1D diffusion-advection or transport equation based on the Green element replication of the differential equation using linear elements. The Green element method (GEM), which solves the singular boundary integral theory (a Fredholm integral equation of the second kind) on a typical element, gives rise to a banded global coefficient matrix which is amenable to efficient matrix solvers. It is herein derived for the transient 1D transport equation with uniform and non-uniform ambient flow conditions and in which first-order decay of the containment is allowed to take place. Because the GEM implements the singular boundary integral theory within each element at a time, the integrations are carried out in exact fashion, thereby making the application of the boundary integral theory more utilitarian. This system of discrete equations, presented herein for the first time, using linear interpolating functions in the spatial dimensions shows promising stable characteristics for advection-dominant transport. Three numerical examples are used to demonstrate the capabilities of the method. The second-order-correct Crank-Nicolson scheme and the modified fully implicit scheme with a difference weighting value of two give superior solutions in all simulated examples.

  19. NASA Space Radiation Transport Code Development Consortium.

    PubMed

    Townsend, Lawrence W

    2005-01-01

    Recently, NASA established a consortium involving the University of Tennessee (lead institution), the University of Houston, Roanoke College and various government and national laboratories, to accelerate the development of a standard set of radiation transport computer codes for NASA human exploration applications. This effort involves further improvements of the Monte Carlo codes HETC and FLUKA and the deterministic code HZETRN, including developing nuclear reaction databases necessary to extend the Monte Carlo codes to carry out heavy ion transport, and extending HZETRN to three dimensions. The improved codes will be validated by comparing predictions with measured laboratory transport data, provided by an experimental measurements consortium, and measurements in the upper atmosphere on the balloon-borne Deep Space Test Bed (DSTB). In this paper, we present an overview of the consortium members and the current status and future plans of consortium efforts to meet the research goals and objectives of this extensive undertaking.

  20. A 2D/1D coupling neutron transport method based on the matrix MOC and NEM methods

    SciTech Connect

    Zhang, H.; Zheng, Y.; Wu, H.; Cao, L.

    2013-07-01

    A new 2D/1D coupling method based on the matrix MOC method (MMOC) and nodal expansion method (NEM) is proposed for solving the three-dimensional heterogeneous neutron transport problem. The MMOC method, used for radial two-dimensional calculation, constructs a response matrix between source and flux with only one sweep and then solves the linear system by using the restarted GMRES algorithm instead of the traditional trajectory sweeping process during within-group iteration for angular flux update. Long characteristics are generated by using the customization of commercial software AutoCAD. A one-dimensional diffusion calculation is carried out in the axial direction by employing the NEM method. The 2D and ID solutions are coupled through the transverse leakage items. The 3D CMFD method is used to ensure the global neutron balance and adjust the different convergence properties of the radial and axial solvers. A computational code is developed based on these theories. Two benchmarks are calculated to verify the coupling method and the code. It is observed that the corresponding numerical results agree well with references, which indicates that the new method is capable of solving the 3D heterogeneous neutron transport problem directly. (authors)

  1. Monte Carlo Ion Transport Analysis Code.

    2009-04-15

    Version: 00 TRIPOS is a versatile Monte Carlo ion transport analysis code. It has been applied to the treatment of both surface and bulk radiation effects. The media considered is composed of multilayer polyatomic materials.

  2. Monte Carlo Nucleon Meson Transport Code System.

    2000-11-17

    Version 00 NMTC/JAERI97 is an upgraded version of the code system NMTC/JAERI, which was developed in 1982 at JAERI and is based on the CCC-161/NMTC code system. NMTC/JAERI97 simulates high energy nuclear reactions and nucleon-meson transport processes.

  3. Mechanisms of 1D crystal growth in reactive vapor transport: indium nitride nanowires.

    PubMed

    Vaddiraju, Sreeram; Mohite, Aditya; Chin, Alan; Meyyappan, M; Sumanasekera, Gamini; Alphenaar, Bruce W; Sunkara, Mahendra K

    2005-08-01

    Indium nitride (InN) nanowire synthesis using indium (In) vapor transport in a dissociated ammonia environment (reactive vapor transport) is studied in detail to understand the nucleation and growth mechanisms involved with the so-called "self-catalysis" schemes. The results show that the nucleation of InN crystal occurs first on the substrate. Later, In droplets are formed on top of the InN crystals because of selective wetting of In onto InN crystals. Further growth via liquid-phase epitaxy through In droplets leads the growth in one dimension (1D), resulting in the formation of InN nanowires. The details about the nucleation and growth aspects within these self-catalysis schemes are rationalized further by demonstrating the growth of heteroepitaxially oriented nanowire arrays on single-crystal substrates and "tree-like" morphologies on a variety of substrates. However, the direct nitridation of In droplets using dissociated ammonia results in the spontaneous nucleation and basal growth of nanowires directly from the In melt surface, which is quite different from the above-mentioned nucleation mechanism with the reactive vapor transport case. The InN nanowires exhibit a band gap of 0.8 eV, whereas the mixed phase of InN and In(2)O(3) nanowires exhibit a peak at approximately 1.9 eV in addition to that at 0.8 eV.

  4. On a 1D nonlocal transport equation with nonlocal velocity and subcritical or supercritical diffusion

    NASA Astrophysics Data System (ADS)

    Lazar, Omar

    2016-11-01

    We study a 1D transport equation with nonlocal velocity with subcritical or supercritical dissipation. For all data in the weighted Sobolev space Hk (wλ,κ) ∩L∞, where k = max ⁡ (0 , 3 / 2 - α) and wλ,κ is a given family of Muckenhoupt weights, we prove a global existence result in the subcritical case α ∈ (1 , 2). We also prove a local existence theorem for large data in H2 (wλ,κ) ∩L∞ in the supercritical case α ∈ (0 , 1). The proofs are based on the use of the weighted Littlewood-Paley theory, interpolation along with some new commutator estimates.

  5. Unsteady Analysis of Inlet-Compressor Acoustic Interactions Using Coupled 3-D and 1-D CFD Codes

    NASA Technical Reports Server (NTRS)

    Suresh, A.; Cole, G. L.

    2000-01-01

    It is well known that the dynamic response of a mixed compression supersonic inlet is very sensitive to the boundary condition imposed at the subsonic exit (engine face) of the inlet. In previous work, a 3-D computational fluid dynamics (CFD) inlet code (NPARC) was coupled at the engine face to a 3-D turbomachinery code (ADPAC) simulating an isolated rotor and the coupled simulation used to study the unsteady response of the inlet. The main problem with this approach is that the high fidelity turbomachinery simulation becomes prohibitively expensive as more stages are included in the simulation. In this paper, an alternative approach is explored, wherein the inlet code is coupled to a lesser fidelity 1-D transient compressor code (DYNTECC) which simulates the whole compressor. The specific application chosen for this evaluation is the collapsing bump experiment performed at the University of Cincinnati, wherein reflections of a large-amplitude acoustic pulse from a compressor were measured. The metrics for comparison are the pulse strength (time integral of the pulse amplitude) and wave form (shape). When the compressor is modeled by stage characteristics the computed strength is about ten percent greater than that for the experiment, but the wave shapes are in poor agreement. An alternate approach that uses a fixed rise in duct total pressure and temperature (so-called 'lossy' duct) to simulate a compressor gives good pulse shapes but the strength is about 30 percent low.

  6. FLUKA: A Multi-Particle Transport Code

    SciTech Connect

    Ferrari, A.; Sala, P.R.; Fasso, A.; Ranft, J.; /Siegen U.

    2005-12-14

    This report describes the 2005 version of the Fluka particle transport code. The first part introduces the basic notions, describes the modular structure of the system, and contains an installation and beginner's guide. The second part complements this initial information with details about the various components of Fluka and how to use them. It concludes with a detailed history and bibliography.

  7. High Energy Particle Transport Code System.

    2003-12-17

    Version 00 NMTC/JAM is an upgraded version of the code CCC-694/NMTC-JAERI97, which was developed in 1982 at JAERI and is based on the CCC-161/NMTC code system. NMTC/JAM simulates high energy nuclear reactions and nuclear meson transport processes. The applicable energy range of NMTC/JAM was extended in principle up to 200 GeV for nucleons and mesons by introducing the high energy nuclear reaction code Jet-Aa Microscopic (JAM) for the intra-nuclear cascade part. For the evaporation andmore » fission process, a new model, GEM, can be used to describe the light nucleus production from the excited residual nucleus. According to the extension of the applicable energy, the nucleon-nucleus non-elastic, elastic and differential elastic cross section data were upgraded. In addition, the particle transport in a magnetic field was implemented for beam transport calculations. Some new tally functions were added, and the format of input and output of data is more user friendly. These new calculation functions and utilities provide a tool to carry out reliable neutronics study of a large scale target system with complex geometry more accurately and easily than with the previous model. It implements an intranuclear cascade model taking account of the in-medium nuclear effects and the preequilibrium calculation model based on the exciton one. For treating the nucleon transport process, the nucleon-nucleus cross sections are revised to those derived by the systematics of Pearlstein. Moreover, the level density parameter derived by Ignatyuk is included as a new option for particle evaporation calculation. A geometry package based on the Combinatorial Geometry with multi-array system and the importance sampling technique is implemented in the code. Tally function is also employed for obtaining such physical quantities as neutron energy spectra, heat deposition and nuclide yield without editing a history file. The code can simulate both the primary spallation reaction and the

  8. THE MCNPX MONTE CARLO RADIATION TRANSPORT CODE

    SciTech Connect

    WATERS, LAURIE S.; MCKINNEY, GREGG W.; DURKEE, JOE W.; FENSIN, MICHAEL L.; JAMES, MICHAEL R.; JOHNS, RUSSELL C.; PELOWITZ, DENISE B.

    2007-01-10

    MCNPX (Monte Carlo N-Particle eXtended) is a general-purpose Monte Carlo radiation transport code with three-dimensional geometry and continuous-energy transport of 34 particles and light ions. It contains flexible source and tally options, interactive graphics, and support for both sequential and multi-processing computer platforms. MCNPX is based on MCNP4B, and has been upgraded to most MCNP5 capabilities. MCNP is a highly stable code tracking neutrons, photons and electrons, and using evaluated nuclear data libraries for low-energy interaction probabilities. MCNPX has extended this base to a comprehensive set of particles and light ions, with heavy ion transport in development. Models have been included to calculate interaction probabilities when libraries are not available. Recent additions focus on the time evolution of residual nuclei decay, allowing calculation of transmutation and delayed particle emission. MCNPX is now a code of great dynamic range, and the excellent neutronics capabilities allow new opportunities to simulate devices of interest to experimental particle physics; particularly calorimetry. This paper describes the capabilities of the current MCNPX version 2.6.C, and also discusses ongoing code development.

  9. Reactive Transport Modeling of Microbially-Mediated Chromate Reduction in 1-D Soil Columns

    NASA Astrophysics Data System (ADS)

    Qiu, H.; Viamajala, S.; Alam, M. M.; Peyton, B. M.; Petersen, J. N.; Yonge, D. R.

    2002-12-01

    Cr(VI) reduction tests were performed with the well known metal reducing bacterium Shewanella oneidensis MR-1 in liquid phase batch reactors and continuous flow soil columns under anaerobic conditions. In the batch tests, the cultures were grown with fumarate as the terminal electron acceptor and lactate as the electron donor in a simulated groundwater medium to determine yield coefficients and specific growth rates. The bench-scale soil column experiments were carried out with MR-1 to test the hypothesis that the kinetic parameters obtained in batch studies, combined with microbial attachment /detachment processes, will accurately predict reactive transport of Cr(VI) during bacterial Cr(VI) reduction in a soil matrix. Cr(VI)-free simulated groundwater media containing fumarate as the limiting substrate and lactate was supplied to a 2.1cm (ID) x 15 cm soil column inoculated with MR-1 for a duration of 9 residence times to allow for biomass to build-up in the column. Thereafter the column was supplied with both Cr(VI) and substrate. The concentrations of effluent substrate, biomass and Cr(VI) were monitored on a periodic basis and attached biomass in the column was measured in the termination of each column test. A reactive transport model was developed in which 6 governing equations deal with Cr(VI) bioreaction, fumarate (as electron donor) consumption, aqueous biomass growth and transport, solid biomass detachment and attachment kinetics, aqueous and solid phase enzyme reaction and transport, respectively. The model incorporating the enzyme reaction kinetics for Cr(VI) reduction, Monod kinetic expressions for substrate depletion, nonlinear attachment and detachment kinetics for aqueous and solid phase microorganism concentration, was solved by a fully implicit, finite-difference procedure using RT3D (A Modular Computer Code for Reactive Multi-species Transport in 3-Dimensional Groundwater Systems) platform in one dimension. Cr(VI)-free column data was used to

  10. Column Testing and 1D Reactive Transport Modeling to Evaluate Uranium Plume Persistence Processes

    NASA Astrophysics Data System (ADS)

    Johnson, R. H.; Morrison, S.; Morris, S.; Tigar, A.; Dam, W. L.; Dayvault, J.

    2015-12-01

    At many U.S. Department of Energy Office of Legacy Management sites, 100 year natural flushing was selected as a remedial option for groundwater uranium plumes. However, current data indicate that natural flushing is not occurring as quickly as expected and solid-phase and aqueous uranium concentrations are persistent. At the Grand Junction, Colorado office site, column testing was completed on core collected below an area where uranium mill tailings have been removed. The total uranium concentration in this core was 13.2 mg/kg and the column was flushed with laboratory-created water with no uranium and chemistry similar to the nearby Gunnison River. The core was flushed for a total of 91 pore volumes producing a maximum effluent uranium concentration of 6,110 μg/L at 2.1 pore volumes and a minimum uranium concentration of 36.2 μg/L at the final pore volume. These results indicate complex geochemical reactions at small pore volumes and a long tailing affect at greater pore volumes. Stop flow data indicate the occurrence of non-equilibrium processes that create uranium concentration rebound. These data confirm the potential for plume persistence, which is occurring at the field scale. 1D reactive transport modeling was completed using PHREEQC (geochemical model) and calibrated to the column test data manually and using PEST (inverse modeling calibration routine). Processes of sorption, dual porosity with diffusion, mineral dissolution, dispersion, and cation exchange were evaluated separately and in combination. The calibration results indicate that sorption and dual porosity are major processes in explaining the column test data. These processes are also supported by fission track photographs that show solid-phase uranium residing in less mobile pore spaces. These procedures provide valuable information on plume persistence and secondary source processes that may be used to better inform and evaluate remedial strategies, including natural flushing.

  11. Validation of comprehensive space radiation transport code

    SciTech Connect

    Shinn, J.L.; Simonsen, L.C.; Cucinotta, F.A.

    1998-12-01

    The HZETRN code has been developed over the past decade to evaluate the local radiation fields within sensitive materials on spacecraft in the space environment. Most of the more important nuclear and atomic processes are now modeled and evaluation within a complex spacecraft geometry with differing material components, including transition effects across boundaries of dissimilar materials, are included. The atomic/nuclear database and transport procedures have received limited validation in laboratory testing with high energy ion beams. The codes have been applied in design of the SAGE-III instrument resulting in material changes to control injurious neutron production, in the study of the Space Shuttle single event upsets, and in validation with space measurements (particle telescopes, tissue equivalent proportional counters, CR-39) on Shuttle and Mir. The present paper reviews the code development and presents recent results in laboratory and space flight validation.

  12. Quantum and semi-classical transport in RTDs using NEMO 1-D

    NASA Technical Reports Server (NTRS)

    Klimeck, G.; Stout, P.; Bowen, R. C.

    2003-01-01

    NEMO 1-D has been developed primarily for the simulation of resonant tunneling diodes, and quantitative and predictive agreements with experimental high performance, high current density devices have been achieved in the past.

  13. GIS-based channel flow and sediment transport simulation using CCHE1D coupled with AnnAGNPS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    CCHE1D (Center for Computational Hydroscience and Engineering 1-Dimensional model) simulates unsteady free-surface flows with nonequilibrium, nonuniform sediment transport in dendritic channel networks. Since early 1990’s, the model and its software packages have been developed and continuously main...

  14. 3D Multigroup Sn Neutron Transport Code

    2001-02-14

    ATTILA is a 3D multigroup transport code with arbitrary order ansotropic scatter. The transport equation is solved in first order form using a tri-linear discontinuous spatial differencing on an arbitrary tetrahedral mesh. The overall solution technique is source iteration with DSA acceleration of the scattering source. Anisotropic boundary and internal sources may be entered in the form of spherical harmonics moments. Alpha and k eigenvalue problems are allowed, as well as fixed source problems. Forwardmore » and adjoint solutions are available. Reflective, vacumn, and source boundary conditions are available. ATTILA can perform charged particle transport calculations using slowing down (CSD) terms. ATTILA can also be used to peform infra-red steady-state calculations for radiative transfer purposes.« less

  15. Code package MAG c user tool for numerical modeling of 1D shock wave and dynamic processes in solids

    NASA Astrophysics Data System (ADS)

    Rudenko, Vladimir; Shaburov, Michail

    1999-06-01

    Design and theoretical and numerical preparation of shock wave experiments require, as a rule, conduction of a large amount of calculations. Usually preparation of a problem for numerical solution, calculation and processing of the results is done be programmers c mathematicians. The appearance of powerful personal computers and interface tools allows to develop such user-oriented programs that a researcher can handle them without the help of a mathematician, even if he does not have special programming background. Code package MAG for numerical solution of 1D system of equations of hydrodynamics, elastoplastics, heat conduction and magnetic hydrodynamic. A number of modern models of elastoplastics and kinetics of power materials is implemented in it. The package includes libraries of equations of state, thermal physical and electromagnetic properties of substances. The code package is an interactive visual medium providing a user with the following capabilities: ? Input and edit initial data for a problem; ? Calculate separate problems, as well as series of problems with a possibility of automatic variation of parameters; ? View the modeled phenomena dynamically using the means of visualization; ? Control the process of calculation: terminate the calculation, change parameters, make express-processing of the results, continue the calculation etc.; ? Process the numerical results producing final plots and tables; ? Record and store numerical results in databases, including the formats supported by Microsoft Word, Acces, Exel; ? Make dynamic visual comparison of the results of several simultaneous calculations; ? Carry out automatic numerical optimization of a selected experimental scheme. The package is easy in use, allows prompt input and convenient information processing. The validity of numerical results obtained with the package MAG has been proved by numerous hydrodynamic experiments and comparisons with numerical results from similar programs. The package was

  16. Space Radiation Transport Code Development: 3DHZETRN

    NASA Technical Reports Server (NTRS)

    Wilson, John W.; Slaba, Tony C.; Badavi, Francis F.; Reddell, Brandon D.; Bahadori, Amir A.

    2015-01-01

    The space radiation transport code, HZETRN, has been used extensively for research, vehicle design optimization, risk analysis, and related applications. One of the simplifying features of the HZETRN transport formalism is the straight-ahead approximation, wherein all particles are assumed to travel along a common axis. This reduces the governing equation to one spatial dimension allowing enormous simplification and highly efficient computational procedures to be implemented. Despite the physical simplifications, the HZETRN code is widely used for space applications and has been found to agree well with fully 3D Monte Carlo simulations in many circumstances. Recent work has focused on the development of 3D transport corrections for neutrons and light ions (Z < 2) for which the straight-ahead approximation is known to be less accurate. Within the development of 3D corrections, well-defined convergence criteria have been considered, allowing approximation errors at each stage in model development to be quantified. The present level of development assumes the neutron cross sections have an isotropic component treated within N explicit angular directions and a forward component represented by the straight-ahead approximation. The N = 1 solution refers to the straight-ahead treatment, while N = 2 represents the bi-directional model in current use for engineering design. The figure below shows neutrons, protons, and alphas for various values of N at locations in an aluminum sphere exposed to a solar particle event (SPE) spectrum. The neutron fluence converges quickly in simple geometry with N > 14 directions. The improved code, 3DHZETRN, transports neutrons, light ions, and heavy ions under space-like boundary conditions through general geometry while maintaining a high degree of computational efficiency. A brief overview of the 3D transport formalism for neutrons and light ions is given, and extensive benchmarking results with the Monte Carlo codes Geant4, FLUKA, and

  17. Time-Dependent, Parallel Neutral Particle Transport Code System.

    2009-09-10

    Version 00 PARTISN (PARallel, TIme-Dependent SN) is the evolutionary successor to CCC-547/DANTSYS. The PARTISN code package is a modular computer program package designed to solve the time-independent or dependent multigroup discrete ordinates form of the Boltzmann transport equation in several different geometries. The modular construction of the package separates the input processing, the transport equation solving, and the post processing (or edit) functions into distinct code modules: the Input Module, the Solver Module, and themore » Edit Module, respectively. PARTISN is the evolutionary successor to the DANTSYSTM code system package. The Input and Edit Modules in PARTISN are very similar to those in DANTSYS. However, unlike DANTSYS, the Solver Module in PARTISN contains one, two, and three-dimensional solvers in a single module. In addition to the diamond-differencing method, the Solver Module also has Adaptive Weighted Diamond-Differencing (AWDD), Linear Discontinuous (LD), and Exponential Discontinuous (ED) spatial differencing methods. The spatial mesh may consist of either a standard orthogonal mesh or a block adaptive orthogonal mesh. The Solver Module may be run in parallel for two and three dimensional problems. One can now run 1-D problems in parallel using Energy Domain Decomposition (triggered by Block 5 input keyword npeg>0). EDD can also be used in 2-D/3-D with or without our standard Spatial Domain Decomposition. Both the static (fixed source or eigenvalue) and time-dependent forms of the transport equation are solved in forward or adjoint mode. In addition, PARTISN now has a probabilistic mode for Probability of Initiation (static) and Probability of Survival (dynamic) calculations. Vacuum, reflective, periodic, white, or inhomogeneous boundary conditions are solved. General anisotropic scattering and inhomogeneous sources are permitted. PARTISN solves the transport equation on orthogonal (single level or block-structured AMR) grids in 1-D

  18. Complementing Graphenes: 1D Interplanar Charge Transport in Polymeric Graphitic Carbon Nitrides.

    PubMed

    Merschjann, Christoph; Tschierlei, Stefanie; Tyborski, Tobias; Kailasam, Kamalakannan; Orthmann, Steven; Hollmann, Dirk; Schedel-Niedrig, Thomas; Thomas, Arne; Lochbrunner, Stefan

    2015-12-22

    Charge transport in polymeric graphitic carbon nitrides is shown to proceed via diffusive hopping of electron and hole polarons with reasonably high mobilities >10(-5) cm(2) V(-1) s(-1). The power-law behavior of the ultrafast luminescence decay exhibits that the predominant transport direction is perpendicular to the graphitic polymer sheets, thus complementing 2D materials like graphene. PMID:26543003

  19. Advanced Nodal P3/SP3 Axial Transport Solvers for the MPACT 2D/1D Scheme

    SciTech Connect

    Stimpson, Shane G; Collins, Benjamin S

    2015-01-01

    As part of its initiative to provide multiphysics simulations of nuclear reactor cores, the Consortium for Advanced Simulation of Light Water Reactors (CASL) is developing the Virtual Environment for Reactor Applications Core Simulator (VERA-CS). The MPACT code, which is the primary neutron transport solver of VERA-CS, employs the two-dimensional/one-dimensional (2D/1D) method to solve 3-dimensional neutron transport problems and provide sub-pin-level resolution of the power distribution. While 2D method of characteristics is used to solve for the transport effects within each plane, 1D-nodal methods are used axially. There have been extensive studies of the 2D/1D method with a variety nodal methods, and the P3/SP3 solver has proved to be an effective method of providing higher-fidelity solutions while maintaining a low computational burden.The current implementation in MPACT wraps a one-node nodal expansion method (NEM) kernel for each moment, iterating between them and performing multiple sweeps to resolve flux distributions. However, it has been observed that this approach is more sensitive to convergence problems. This paper documents the theory and application two new nodal P3/SP3 approaches to be used within the 2D/1D method in MPACT. These two approaches aim to provide enhanced stability compared with the pre-existing one-node approach. Results from the HY-NEM-SP3 solver show that the accuracy is consistent with the one-node formulations and provides improved convergence for some problems; but the solver has issues with cases in thin planes. Although the 2N-SENM-SP3 solver is still under development, it is intended to resolve the issues with HY-NEM-SP3 but it will incur some additional computational burden by necessitating an additional 1D-CMFD-P3 solver to generate the second moment cell-averaged scalar flux.

  20. SYMTRAN - A Time-dependent Symmetric Tandem Mirror Transport Code

    SciTech Connect

    Hua, D; Fowler, T

    2004-06-15

    A time-dependent version of the steady-state radial transport model in symmetric tandem mirrors in Ref. [1] has been coded up and first tests performed. Our code, named SYMTRAN, is an adaptation of the earlier SPHERE code for spheromaks, now modified for tandem mirror physics. Motivated by Post's new concept of kinetic stabilization of symmetric mirrors, it is an extension of the earlier TAMRAC rate-equation code omitting radial transport [2], which successfully accounted for experimental results in TMX. The SYMTRAN code differs from the earlier tandem mirror radial transport code TMT in that our code is focused on axisymmetric tandem mirrors and classical diffusion, whereas TMT emphasized non-ambipolar transport in TMX and MFTF-B due to yin-yang plugs and non-symmetric transitions between the plugs and axisymmetric center cell. Both codes exhibit interesting but different non-linear behavior.

  1. Multiple component codes based generalized LDPC codes for high-speed optical transport.

    PubMed

    Djordjevic, Ivan B; Wang, Ting

    2014-07-14

    A class of generalized low-density parity-check (GLDPC) codes suitable for optical communications is proposed, which consists of multiple local codes. It is shown that Hamming, BCH, and Reed-Muller codes can be used as local codes, and that the maximum a posteriori probability (MAP) decoding of these local codes by Ashikhmin-Lytsin algorithm is feasible in terms of complexity and performance. We demonstrate that record coding gains can be obtained from properly designed GLDPC codes, derived from multiple component codes. We then show that several recently proposed classes of LDPC codes such as convolutional and spatially-coupled codes can be described using the concept of GLDPC coding, which indicates that the GLDPC coding can be used as a unified platform for advanced FEC enabling ultra-high speed optical transport. The proposed class of GLDPC codes is also suitable for code-rate adaption, to adjust the error correction strength depending on the optical channel conditions.

  2. Detection and characterization of uranium-humic complexes during 1D transport studies

    SciTech Connect

    Lesher, Emily K.; Honeyman, Bruce D.; Ranville, James F.

    2013-05-01

    The speciation and transport of uranium (VI) through porous media is highly dependent on solution conditions, the presence of complexing ligands, and the nature of the porous media. The dependency on many variables makes prediction of U transport in bench-scale experiments and in the field difficult. In particular, the identification of colloidal U phases poses a technical challenge. Transport of U in the presence and absence of natural organic matter (Suwannee River humic acid, SRHA) through silica sand and hematite coated silica sand was tested at pH 4 and 5 using static columns, where flow is controlled by gravity and residence time between advective pore volume exchanges can be strictly controlled. The column effluents were characterized by traditional techniques including ICPMS quantification of total [U] and [Fe], TOC analysis of [DOC], and pH analysis, and also by non-traditional techniques: flow field flow fractionation with online ICPMS detection (FlFFF-ICPMS) and specific UV absorbance (SUVA) characterization of effluent fractions. Key results include that the transport of U through the columns was enhanced by pre-equilibration with SRHA, and previously deposited U was remobilized by the addition of SRHA. The advanced techniques yielded important insights on the mechanisms of transport: FlFFF-ICPMS identified a U-SRHA complex as the mobile U species and directly quantified relative amounts of the complex, while specific UV absorbance (SUVA) measurements indicated a composition-based fractionation onto the porous media.

  3. Description of Transport Codes for Space Radiation Shielding

    NASA Technical Reports Server (NTRS)

    Kim, Myung-Hee Y.; Wilson, John W.; Cucinotta, Francis A.

    2011-01-01

    This slide presentation describes transport codes and their use for studying and designing space radiation shielding. When combined with risk projection models radiation transport codes serve as the main tool for study radiation and designing shielding. There are three criteria for assessing the accuracy of transport codes: (1) Ground-based studies with defined beams and material layouts, (2) Inter-comparison of transport code results for matched boundary conditions and (3) Comparisons to flight measurements. These three criteria have a very high degree with NASA's HZETRN/QMSFRG.

  4. Quantum transport through disordered 1D wires: Conductance via localized and delocalized electrons

    SciTech Connect

    Gopar, Víctor A.

    2014-01-14

    Coherent electronic transport through disordered systems, like quantum wires, is a topic of fundamental and practical interest. In particular, the exponential localization of electron wave functions-Anderson localization-due to the presence of disorder has been widely studied. In fact, Anderson localization, is not an phenomenon exclusive to electrons but it has been observed in microwave and acoustic experiments, photonic materials, cold atoms, etc. Nowadays, many properties of electronic transport of quantum wires have been successfully described within a scaling approach to Anderson localization. On the other hand, anomalous localization or delocalization is, in relation to the Anderson problem, a less studied phenomenon. Although one can find signatures of anomalous localization in very different systems in nature. In the problem of electronic transport, a source of delocalization may come from symmetries present in the system and particular disorder configurations, like the so-called Lévy-type disorder. We have developed a theoretical model to describe the statistical properties of transport when electron wave functions are delocalized. In particular, we show that only two physical parameters determine the complete conductance distribution.

  5. 1D momentum-conserving systems: the conundrum of anomalous versus normal heat transport

    NASA Astrophysics Data System (ADS)

    Li, Yunyun; Liu, Sha; Li, Nianbei; Hänggi, Peter; Li, Baowen

    2015-04-01

    Transport and the spread of heat in Hamiltonian one dimensional momentum conserving nonlinear systems is commonly thought to proceed anomalously. Notable exceptions, however, do exist of which the coupled rotator model is a prominent case. Therefore, the quest arises to identify the origin of manifest anomalous energy and momentum transport in those low dimensional systems. We develop the theory for both, the statistical densities for momentum- and energy-spread and particularly its momentum-/heat-diffusion behavior, as well as its corresponding momentum/heat transport features. We demonstrate that the second temporal derivative of the mean squared deviation of the momentum spread is proportional to the equilibrium correlation of the total momentum flux. Subtracting the part which corresponds to a ballistic momentum spread relates (via this integrated, subleading momentum flux correlation) to an effective viscosity, or equivalently, to the underlying momentum diffusivity. We next put forward the intriguing hypothesis: normal spread of this so adjusted excess momentum density causes normal energy spread and alike normal heat transport (Fourier Law). Its corollary being that an anomalous, superdiffusive broadening of this adjusted excess momentum density in turn implies an anomalous energy spread and correspondingly anomalous, superdiffusive heat transport. This hypothesis is successfully corroborated within extensive molecular dynamics simulations over large extended time scales. Our numerical validation of the hypothesis involves four distinct archetype classes of nonlinear pair-interaction potentials: (i) a globally bounded pair interaction (the noted coupled rotator model), (ii) unbounded interactions acting at large distances (the coupled rotator model amended with harmonic pair interactions), (iii) the case of a hard point gas with unbounded square-well interactions and (iv) a pair interaction potential being unbounded at short distances while displaying an

  6. Code System To Analyze Radiological Impact From Radwaste Transportation.

    1988-05-01

    Version 00 RADSHIP-2 is a computer code system used to analyze the environmental impact of radwaste transportation in Taiwan. The specific transport scheme including the land transport by truck and sea transport by ship or barge were considered in the analysis for normal transport and transport accident conditions. The code combines meteorological, population, health physics, transportation, packaging and material factors and has the capability to obtain the results of the expected annual population radiation exposure,more » the expected number of annual latent cancer fatalities and the annual probability of a given number of early fatalities.« less

  7. A benchmark for galactic cosmic ray transport codes

    NASA Technical Reports Server (NTRS)

    Wilson, John W.; Townsend, Lawrence W.

    1987-01-01

    A nontrivial analytic benchmark solution for galactic cosmic ray transport is presented for use in transport code validation. Computational accuracy for a previously-developed cosmic ray transport code is established to within one percent by comparison with this exact benchmark. Hence, solution accuracy for the transport problem is mainly limited by inaccuracies in the input spectra, input interaction databases, and the use of a straight ahead/velocity-conserving approximation.

  8. Impact of water table fluctuations on water flow and solute transport in 1D column systems

    NASA Astrophysics Data System (ADS)

    Rühle, F.; Stumpp, C.

    2012-04-01

    Although hydrological processes and mass fluxes in the unsaturated and saturated zone have been well studied separately, little is known about transition processes between these zones. Since the transition zone is dynamic and varies spatially and temporally with fluctuations of the water table, water flow and solute transport are believed to vary dynamically, too. This may influence the transport and fate of dissolved contaminants and consequently the quality of groundwater. In order to protect and maintain drinking water resources, improved understanding about hydrological processes at the dynamic interface between the unsaturated and saturated zone is needed. The objective of this study was to investigate the impact of water table fluctuations on one-dimensional vertical flow and solute transport in laboratory column systems. Therefore, two flow-through columns were constantly irrigated with groundwater at an infiltration rate of 4.7 cm/d. In one column the water table was kept statically fixed in the middle, in the other column the water table was continually fluctuated by regularly raising and lowering the outflow tube. Several multi-tracer experiments were conducted and compared injecting the tracers bromide, deuterium and 18-oxygen at different water levels. Data modelling was performed with a lumped parameter model to simulate the hydrological fluxes. Our results showed that at static water table and similar water fluxes in both columns, structural heterogeneities due to packing lead to differences in solute transport, e.g. different dispersivity. Tracer breakthrough curves were well simulated with the lumped parameter model indicating that the systems were at steady state. When the water table was fluctuated small differences in solute transport were observed. Even with a fluctuating water table the lumped parameter model yielded high modelling accuracy and indicated that under certain hydrological conditions water table fluctuations lead to slightly

  9. Transport of an interacting Bose gas in 1D disordered lattices

    SciTech Connect

    D'Errico, C.; Chaudhuri, S.; Gori, L.; Kumar, A.; Lucioni, E.; Tanzi, L.; Inguscio, M.; Modugno, G.

    2014-08-20

    We use ultracold atoms in a quasiperiodic lattice to study two outstanding problems in the physics of disordered systems: a) the anomalous diffusion of a wavepacket in the presence of disorder, interactions and noise; b) the transport of a disordered superfluid. a) Our results show that the subdiffusion, observed when interaction alone is present, can be modelled with a nonlinear diffusion equation and the peculiar shape of the expanding density profiles can be connected to the microscopic nonlinear diffusion coefficients. Also when noise alone is present we can describe the observed normal diffusion dynamics by existing microscopic models. In the unexplored regime in which noise and interaction are combined, instead, we observe an anomalous diffusion, that we model with a generalized diffusion equation, where noise- and interaction-induced contributions add each other. b) We find that an instability appearing at relatively large momenta can be employed to locate the fluid-insulator crossover driven by disorder. By investigating the momentum-dependent transport, we observe a sharp crossover from a weakly dissipative regime to a strongly unstable one at a disorder-dependent critical momentum. The set of critical disorder and interaction strengths for which such critical momentum vanishes, can be identified with the separation between a fluid regime and an insulating one and can be related to the predicted zero-temperature superfluid-Bose glass transition.

  10. Development of a 3D to 1D Particle Transport Model to Predict Deposition in the Lungs

    NASA Astrophysics Data System (ADS)

    Oakes, Jessica M.; Grandmont, Celine; Shadden, Shawn C.; Vignon-Clementel, Irene E.

    2014-11-01

    Aerosolized particles are commonly used for therapeutic drug delivery as they can be delivered to the body systemically or be used to treat lung diseases. Recent advances in computational resources have allowed for sophisticated pulmonary simulations, however it is currently impossible to solve for airflow and particle transport for all length and time scales of the lung. Instead, multi-scale methods must be used. In our recent work, where computational methods were employed to solve for airflow and particle transport in the rat airways (Oakes et al. (2014), Annals of Biomedical Engineering 42, 899), the number of particles to exit downstream of the 3D domain was determined. In this current work, the time-dependent Lagrangian description of particles was used to numerically solve a 1D convection-diffusion model (trumpet model, Taulbee and Yu (1975), Journal of Applied Physiology, 38, 77) parameterized specifically for the lung. The expansion of the airway dimensions was determined based on data collected from our aerosol exposure experiments (Oakes et al. (2014), Journal of Applied Physiology, 116, 1561). This 3D-1D framework enables us to predict the fate of particles in the whole lung. This work was supported by the Whitaker Foundation at the IIE, a INRIA Associated Team Postdoc Grant, and a UC Presidential Fellowship.

  11. A Deterministic Transport Code for Space Environment Electrons

    NASA Technical Reports Server (NTRS)

    Nealy, John E.; Chang, C. K.; Norman, Ryan B.; Blattnig, Steve R.; Badavi, Francis F.; Adamczyk, Anne M.

    2010-01-01

    A deterministic computational procedure has been developed to describe transport of space environment electrons in various shield media. This code is an upgrade and extension of an earlier electron code. Whereas the former code was formulated on the basis of parametric functions derived from limited laboratory data, the present code utilizes well established theoretical representations to describe the relevant interactions and transport processes. The shield material specification has been made more general, as have the pertinent cross sections. A combined mean free path and average trajectory approach has been used in the transport formalism. Comparisons with Monte Carlo calculations are presented.

  12. Recent developments in the Los Alamos radiation transport code system

    SciTech Connect

    Forster, R.A.; Parsons, K.

    1997-06-01

    A brief progress report on updates to the Los Alamos Radiation Transport Code System (LARTCS) for solving criticality and fixed-source problems is provided. LARTCS integrates the Diffusion Accelerated Neutral Transport (DANT) discrete ordinates codes with the Monte Carlo N-Particle (MCNP) code. The LARCTS code is being developed with a graphical user interface for problem setup and analysis. Progress in the DANT system for criticality applications include a two-dimensional module which can be linked to a mesh-generation code and a faster iteration scheme. Updates to MCNP Version 4A allow statistical checks of calculated Monte Carlo results.

  13. Optix: A Monte Carlo scintillation light transport code

    NASA Astrophysics Data System (ADS)

    Safari, M. J.; Afarideh, H.; Ghal-Eh, N.; Davani, F. Abbasi

    2014-02-01

    The paper reports on the capabilities of Monte Carlo scintillation light transport code Optix, which is an extended version of previously introduced code Optics. Optix provides the user a variety of both numerical and graphical outputs with a very simple and user-friendly input structure. A benchmarking strategy has been adopted based on the comparison with experimental results, semi-analytical solutions, and other Monte Carlo simulation codes to verify various aspects of the developed code. Besides, some extensive comparisons have been made against the tracking abilities of general-purpose MCNPX and FLUKA codes. The presented benchmark results for the Optix code exhibit promising agreements.

  14. Overview of Recent Radiation Transport Code Comparisons for Space Applications

    NASA Astrophysics Data System (ADS)

    Townsend, Lawrence

    Recent advances in radiation transport code development for space applications have resulted in various comparisons of code predictions for a variety of scenarios and codes. Comparisons among both Monte Carlo and deterministic codes have been made and published by vari-ous groups and collaborations, including comparisons involving, but not limited to HZETRN, HETC-HEDS, FLUKA, GEANT, PHITS, and MCNPX. In this work, an overview of recent code prediction inter-comparisons, including comparisons to available experimental data, is presented and discussed, with emphases on those areas of agreement and disagreement among the various code predictions and published data.

  15. Model-Based Least Squares Reconstruction of Coded Source Neutron Radiographs: Integrating the ORNL HFIR CG1D Source Model

    SciTech Connect

    Santos-Villalobos, Hector J; Gregor, Jens; Bingham, Philip R

    2014-01-01

    At the present, neutron sources cannot be fabricated small and powerful enough in order to achieve high resolution radiography while maintaining an adequate flux. One solution is to employ computational imaging techniques such as a Magnified Coded Source Imaging (CSI) system. A coded-mask is placed between the neutron source and the object. The system resolution is increased by reducing the size of the mask holes and the flux is increased by increasing the size of the coded-mask and/or the number of holes. One limitation of such system is that the resolution of current state-of-the-art scintillator-based detectors caps around 50um. To overcome this challenge, the coded-mask and object are magnified by making the distance from the coded-mask to the object much smaller than the distance from object to detector. In previous work, we have shown via synthetic experiments that our least squares method outperforms other methods in image quality and reconstruction precision because of the modeling of the CSI system components. However, the validation experiments were limited to simplistic neutron sources. In this work, we aim to model the flux distribution of a real neutron source and incorporate such a model in our least squares computational system. We provide a full description of the methodology used to characterize the neutron source and validate the method with synthetic experiments.

  16. Interpretation of MSL REMS data using 1D coupled heat and water vapor transport model of Mars subsurface

    NASA Astrophysics Data System (ADS)

    Gloesener, Elodie; Karatekin, Özgür; Dehant, Véronique

    2016-04-01

    MSL Rover Environmental Monitoring Station (REMS) performed high-resolution measurements of temperature and relative humidity during more than one Martian year. In this work, a 1D subsurface model is used to study water vapor exchange between the atmosphere and the subsurface at Gale crater using REMS data. The thermal model used includes several layers of varying thickness with depth and properties that can be changed to correspond to those of Martian rocks at locations studied. It also includes the transport of water vapor through porous Martian regolith and the different phases considered are vapor, ice and adsorbed H2O. The total mass flux is given by the sum of diffusive and advective transport. The role of an adsorbing regolith on water transfer as well as the range of parameters with significant effect on water transport in Martian conditions are investigated. In addition, kinetics of the adsorption process is considered to examine its influence on the water vapor exchange between the subsurface and the atmosphere.

  17. A 1-D Size Specific Numerical Model for Gravel Transport That Includes Sediment Exchange with a Floodplain

    NASA Astrophysics Data System (ADS)

    Lauer, Wesley; Viparelli, Enrica; Piegay, Herve

    2014-05-01

    Sedimentary deposits adjacent to rivers can represent important sources and sinks for bed material sediment, particularly on decadal and longer timescales. The Morphodynamics and Sediment Tracers in 1-D model (MAST-1D) is a size-specific sediment transport model that allows for active exchange between channel and floodplain sediment on river reaches of tens to hundreds of kilometers in length. The model is intended to provide a mechanism for performing a first-order assessment of the likely importance of off-channel sediment exchange in controlling decadal-scale geomorphic trends, thereby helping plan and/or prioritize field data collection and higher resolution modeling work. The model develops a sediment budget for short segments of an alluvial valley. Each segment encompasses several active river bends. In each segment, a sediment transport capacity computation is performed to determine the downstream flux of bed material sediment, following the approach of most other 1-D sediment transport models. However, the model differs from most other bed evolution models in that sediment can be exchanged with the floodplain in each segment, and mass conservation is applied to both the active layer and floodplain sediment storage reservoirs. The potential for net imbalances in overall exchange as well as the size specific nature of the computations allows the model to simulate reach-scale aggradation/degradation and/or changes in bed texture. The inclusion of fine sediment in the model allows it to track geochemical tracer material and also provides a mechanism to simulate, to first order, the effects of changes in the supply of silt and clay on overall channel hydraulic capacity. The model is applied to a ~40 km reach of the Ain River, a tributary of the Rhône River in eastern France that has experienced a significant sediment deficit as a result of the construction of several dams between 1920 and 1970. MAST-1D simulations result in both incision and the formation of a

  18. Assessment of phenol infiltration resilience in soil media by HYDRUS-1D transport model for a waste discharge site.

    PubMed

    Adhikari, K; Pal, S; Chakraborty, B; Mukherjee, S N; Gangopadhyay, A

    2014-10-01

    The movement of contaminants through soil imparts a variety of geo-environmental problem inclusive of lithospheric pollution. Near-surface aquifers are often vulnerable to contamination from surface source if overlying soil possesses poor resilience or contaminant attenuation capacity. The prediction of contaminant transport through soil is urged to protect groundwater from sources of pollutants. Using field simulation through column experiments and mathematical modeling like HYDRUS-1D, assessment of soil resilience and movement of contaminants through the subsurface to reach aquifers can be predicted. An outfall site of effluents of a coke oven plant comprising of alarming concentration of phenol (4-12.2 mg/L) have been considered for studying groundwater condition and quality, in situ soil characterization, and effluent characterization. Hydrogeological feature suggests the presence of near-surface aquifers at the effluent discharge site. Analysis of groundwater of nearby locality reveals the phenol concentration (0.11-0.75 mg/L) exceeded the prescribed limit of WHO specification (0.002 mg/L). The in situ soil, used in column experiment, possess higher saturated hydraulic conductivity (KS  = 5.25 × 10(-4) cm/s). The soil containing 47 % silt, 11 % clay, and 1.54% organic carbon content was found to be a poor absorber of phenol (24 mg/kg). The linear phenol adsorption isotherm model showed the best fit (R(2) = 0.977, RMSE = 1.057) to the test results. Column experiments revealed that the phenol removal percent and the length of the mass transfer zone increased with increasing bed heights. The overall phenol adsorption efficiency was found to be 42-49%. Breakthrough curves (BTCs) predicted by HYDRUS-1D model appears to be close fitting with the BTCs derived from the column experiments. The phenol BTC predicted by the HYDRUS-1D model for 1.2 m depth subsurface soil, i.e., up to the depth of groundwater in the study area, showed that the exhaustion

  19. Assessment of phenol infiltration resilience in soil media by HYDRUS-1D transport model for a waste discharge site.

    PubMed

    Adhikari, K; Pal, S; Chakraborty, B; Mukherjee, S N; Gangopadhyay, A

    2014-10-01

    The movement of contaminants through soil imparts a variety of geo-environmental problem inclusive of lithospheric pollution. Near-surface aquifers are often vulnerable to contamination from surface source if overlying soil possesses poor resilience or contaminant attenuation capacity. The prediction of contaminant transport through soil is urged to protect groundwater from sources of pollutants. Using field simulation through column experiments and mathematical modeling like HYDRUS-1D, assessment of soil resilience and movement of contaminants through the subsurface to reach aquifers can be predicted. An outfall site of effluents of a coke oven plant comprising of alarming concentration of phenol (4-12.2 mg/L) have been considered for studying groundwater condition and quality, in situ soil characterization, and effluent characterization. Hydrogeological feature suggests the presence of near-surface aquifers at the effluent discharge site. Analysis of groundwater of nearby locality reveals the phenol concentration (0.11-0.75 mg/L) exceeded the prescribed limit of WHO specification (0.002 mg/L). The in situ soil, used in column experiment, possess higher saturated hydraulic conductivity (KS  = 5.25 × 10(-4) cm/s). The soil containing 47 % silt, 11 % clay, and 1.54% organic carbon content was found to be a poor absorber of phenol (24 mg/kg). The linear phenol adsorption isotherm model showed the best fit (R(2) = 0.977, RMSE = 1.057) to the test results. Column experiments revealed that the phenol removal percent and the length of the mass transfer zone increased with increasing bed heights. The overall phenol adsorption efficiency was found to be 42-49%. Breakthrough curves (BTCs) predicted by HYDRUS-1D model appears to be close fitting with the BTCs derived from the column experiments. The phenol BTC predicted by the HYDRUS-1D model for 1.2 m depth subsurface soil, i.e., up to the depth of groundwater in the study area, showed that the exhaustion

  20. Simulation of decay heat removal by natural convection in a pool type fast reactor model-ramona-with coupled 1D/2D thermal hydraulic code system

    SciTech Connect

    Kasinathan, N.; Rajakumar, A.; Vaidyanathan, G.; Chetal, S.C.

    1995-09-01

    Post shutdown decay heat removal is an important safety requirement in any nuclear system. In order to improve the reliability of this function, Liquid metal (sodium) cooled fast breeder reactors (LMFBR) are equipped with redundant hot pool dipped immersion coolers connected to natural draught air cooled heat exchangers through intermediate sodium circuits. During decay heat removal, flow through the core, immersion cooler primary side and in the intermediate sodium circuits are also through natural convection. In order to establish the viability and validate computer codes used in making predictions, a 1:20 scale experimental model called RAMONA with water as coolant has been built and experimental simulation of decay heat removal situation has been performed at KfK Karlsruhe. Results of two such experiments have been compiled and published as benchmarks. This paper brings out the results of the numerical simulation of one of the benchmark case through a 1D/2D coupled code system, DHDYN-1D/THYC-2D and the salient features of the comparisons. Brief description of the formulations of the codes are also included.

  1. A velocity-dependent anomalous radial transport model for (2-D, 2-V) kinetic transport codes

    NASA Astrophysics Data System (ADS)

    Bodi, Kowsik; Krasheninnikov, Sergei; Cohen, Ron; Rognlien, Tom

    2008-11-01

    Plasma turbulence constitutes a significant part of radial plasma transport in magnetically confined plasmas. This turbulent transport is modeled in the form of anomalous convection and diffusion coefficients in fluid transport codes. There is a need to model the same in continuum kinetic edge codes [such as the (2-D, 2-V) transport version of TEMPEST, NEO, and the code being developed by the Edge Simulation Laboratory] with non-Maxwellian distributions. We present an anomalous transport model with velocity-dependent convection and diffusion coefficients leading to a diagonal transport matrix similar to that used in contemporary fluid transport models (e.g., UEDGE). Also presented are results of simulations corresponding to radial transport due to long-wavelength ExB turbulence using a velocity-independent diffusion coefficient. A BGK collision model is used to enable comparison with fluid transport codes.

  2. Recent advances in the Mercury Monte Carlo particle transport code

    SciTech Connect

    Brantley, P. S.; Dawson, S. A.; McKinley, M. S.; O'Brien, M. J.; Stevens, D. E.; Beck, B. R.; Jurgenson, E. D.; Ebbers, C. A.; Hall, J. M.

    2013-07-01

    We review recent physics and computational science advances in the Mercury Monte Carlo particle transport code under development at Lawrence Livermore National Laboratory. We describe recent efforts to enable a nuclear resonance fluorescence capability in the Mercury photon transport. We also describe recent work to implement a probability of extinction capability into Mercury. We review the results of current parallel scaling and threading efforts that enable the code to run on millions of MPI processes. (authors)

  3. Benchmarking NNWSI flow and transport codes: COVE 1 results

    SciTech Connect

    Hayden, N.K.

    1985-06-01

    The code verification (COVE) activity of the Nevada Nuclear Waste Storage Investigations (NNWSI) Project is the first step in certification of flow and transport codes used for NNWSI performance assessments of a geologic repository for disposing of high-level radioactive wastes. The goals of the COVE activity are (1) to demonstrate and compare the numerical accuracy and sensitivity of certain codes, (2) to identify and resolve problems in running typical NNWSI performance assessment calculations, and (3) to evaluate computer requirements for running the codes. This report describes the work done for COVE 1, the first step in benchmarking some of the codes. Isothermal calculations for the COVE 1 benchmarking have been completed using the hydrologic flow codes SAGUARO, TRUST, and GWVIP; the radionuclide transport codes FEMTRAN and TRUMP; and the coupled flow and transport code TRACR3D. This report presents the results of three cases of the benchmarking problem solved for COVE 1, a comparison of the results, questions raised regarding sensitivities to modeling techniques, and conclusions drawn regarding the status and numerical sensitivities of the codes. 30 refs.

  4. Bounce-averaged Fokker-Planck code for stellarator transport

    SciTech Connect

    Mynick, H.E.; Hitchon, W.N.G.

    1985-07-01

    A computer code for solving the bounce-averaged Fokker-Planck equation appropriate to stellarator transport has been developed, and its first applications made. The code is much faster than the bounce-averaged Monte-Carlo codes, which up to now have provided the most efficient numerical means for studying stellarator transport. Moreover, because the connection to analytic kinetic theory of the Fokker-Planck approach is more direct than for the Monte-Carlo approach, a comparison of theory and numerical experiment is now possible at a considerably more detailed level than previously.

  5. Recent advances in neutral particle transport methods and codes

    NASA Astrophysics Data System (ADS)

    Azmy, Yousry Y.

    1997-02-01

    An overview of Oak Ridge National Laboratory's (ORNL) 3D neural particle transport code, TORT, is presented. Special features of the code that make it invaluable for large applications are summarized for the prospective user. Advanced capabilities currently under development and installation in the production release of TORT are discussed in some detail. These include: multitasking on Cray platforms running the UNICOS operating system; adjacent-cell preconditioning acceleration scheme; and graphics codes for displaying computed quantities such as the flux. Further developments for TORT and its companion codes to enhance its present capabilities, as well as expand its range of applications will be discussed. Speculation on the next generation of neutral particle transport codes at ORNL, especially regarding unstructured grids and high order spatial approximations, will also be mentioned.

  6. Recent advances in neutral particle transport methods and codes

    SciTech Connect

    Azmy, Y.Y.

    1996-06-01

    An overview of ORNL`s three-dimensional neutral particle transport code, TORT, is presented. Special features of the code that make it invaluable for large applications are summarized for the prospective user. Advanced capabilities currently under development and installation in the production release of TORT are discussed; they include: multitasking on Cray platforms running the UNICOS operating system; Adjacent cell Preconditioning acceleration scheme; and graphics codes for displaying computed quantities such as the flux. Further developments for TORT and its companion codes to enhance its present capabilities, as well as expand its range of applications are disucssed. Speculation on the next generation of neutron particle transport codes at ORNL, especially regarding unstructured grids and high order spatial approximations, are also mentioned.

  7. Transport Code for Regular Triangular Geometry

    1993-06-09

    DIAMANT2 solves the two-dimensional static multigroup neutron transport equation in planar regular triangular geometry. Both regular and adjoint, inhomogeneous and homogeneous problems subject to vacuum, reflective or input specified boundary flux conditions are solved. Anisotropy is allowed for the scattering source. Volume and surface sources are allowed for inhomogeneous problems.

  8. Current status of the PSG Monte Carlo neutron transport code

    SciTech Connect

    Leppaenen, J.

    2006-07-01

    PSG is a new Monte Carlo neutron transport code, developed at the Technical Research Centre of Finland (VTT). The code is mainly intended for fuel assembly-level reactor physics calculations, such as group constant generation for deterministic reactor simulator codes. This paper presents the current status of the project and the essential capabilities of the code. Although the main application of PSG is in lattice calculations, the geometry is not restricted in two dimensions. This paper presents the validation of PSG against the experimental results of the three-dimensional MOX fuelled VENUS-2 reactor dosimetry benchmark. (authors)

  9. DETERMINISTIC TRANSPORT METHODS AND CODES AT LOS ALAMOS

    SciTech Connect

    J. E. MOREL

    1999-06-01

    The purposes of this paper are to: Present a brief history of deterministic transport methods development at Los Alamos National Laboratory from the 1950's to the present; Discuss the current status and capabilities of deterministic transport codes at Los Alamos; and Discuss future transport needs and possible future research directions. Our discussion of methods research necessarily includes only a small fraction of the total research actually done. The works that have been included represent a very subjective choice on the part of the author that was strongly influenced by his personal knowledge and experience. The remainder of this paper is organized in four sections: the first relates to deterministic methods research performed at Los Alamos, the second relates to production codes developed at Los Alamos, the third relates to the current status of transport codes at Los Alamos, and the fourth relates to future research directions at Los Alamos.

  10. Flow and Containment Transport Code for Modeling Variably Saturated Porous Media

    1998-05-14

    FACT is a finite element based code designed to model subsurface flow and contaminant transport. It was designed to perform transient three-dimensional calculations that simulate isothermal groundwater flow, moisture movement, and solute transport in variably saturated and fully saturated subsurface porous media. The code is designed specifically to handle complex multi-layer and/or heterogenous aquifer systems in an efficient manner and accommodates a wide range of boundary conditions. Additionally 1-D and 2-D (in Cartesian coordinates) problemsmore » are handled in FACT by simply limiting the number of elements in a particular direction(s) to one. The governing equations in FACT are formulated only in Cartesian coordinates. FACT writes out both ascii and graphical binary files that are TECPLOT-ready. Special features are also available within FACT for handling the typical groundwater modeling needs for remediation efforts at the Savannah River Site.« less

  11. Modeling of Anomalous Transport in Tokamaks with FACETS code

    NASA Astrophysics Data System (ADS)

    Pankin, A. Y.; Batemann, G.; Kritz, A.; Rafiq, T.; Vadlamani, S.; Hakim, A.; Kruger, S.; Miah, M.; Rognlien, T.

    2009-05-01

    The FACETS code, a whole-device integrated modeling code that self-consistently computes plasma profiles for the plasma core and edge in tokamaks, has been recently developed as a part of the SciDAC project for core-edge simulations. A choice of transport models is available in FACETS through the FMCFM interface [1]. Transport models included in FMCFM have specific ranges of applicability, which can limit their use to parts of the plasma. In particular, the GLF23 transport model does not include the resistive ballooning effects that can be important in the tokamak pedestal region and GLF23 typically under-predicts the anomalous fluxes near the magnetic axis [2]. The TGLF and GYRO transport models have similar limitations [3]. A combination of transport models that covers the entire discharge domain is studied using FACETS in a realistic tokamak geometry. Effective diffusivities computed with the FMCFM transport models are extended to the region near the separatrix to be used in the UEDGE code within FACETS. 1. S. Vadlamani et al. (2009) %First time-dependent transport simulations using GYRO and NCLASS within FACETS (this meeting).2. T. Rafiq et al. (2009) %Simulation of electron thermal transport in H-mode discharges Submitted to Phys. Plasmas.3. C. Holland et al. (2008) %Validation of gyrokinetic transport simulations using %DIII-D core turbulence measurements Proc. of IAEA FEC (Switzerland, 2008)

  12. Radiation transport phenomena and modeling - part A: Codes

    SciTech Connect

    Lorence, L.J.

    1997-06-01

    The need to understand how particle radiation (high-energy photons and electrons) from a variety of sources affects materials and electronics has motivated the development of sophisticated computer codes that describe how radiation with energies from 1.0 keV to 100.0 GeV propagates through matter. Predicting radiation transport is the necessary first step in predicting radiation effects. The radiation transport codes that are described here are general-purpose codes capable of analyzing a variety of radiation environments including those produced by nuclear weapons (x-rays, gamma rays, and neutrons), by sources in space (electrons and ions) and by accelerators (x-rays, gamma rays, and electrons). Applications of these codes include the study of radiation effects on electronics, nuclear medicine (imaging and cancer treatment), and industrial processes (food disinfestation, waste sterilization, manufacturing.) The primary focus will be on coupled electron-photon transport codes, with some brief discussion of proton transport. These codes model a radiation cascade in which electrons produce photons and vice versa. This coupling between particles of different types is important for radiation effects. For instance, in an x-ray environment, electrons are produced that drive the response in electronics. In an electron environment, dose due to bremsstrahlung photons can be significant once the source electrons have been stopped.

  13. MORSE Monte Carlo radiation transport code system

    SciTech Connect

    Emmett, M.B.

    1983-02-01

    This report is an addendum to the MORSE report, ORNL-4972, originally published in 1975. This addendum contains descriptions of several modifications to the MORSE Monte Carlo Code, replacement pages containing corrections, Part II of the report which was previously unpublished, and a new Table of Contents. The modifications include a Klein Nishina estimator for gamma rays. Use of such an estimator required changing the cross section routines to process pair production and Compton scattering cross sections directly from ENDF tapes and writing a new version of subroutine RELCOL. Another modification is the use of free form input for the SAMBO analysis data. This required changing subroutines SCORIN and adding new subroutine RFRE. References are updated, and errors in the original report have been corrected. (WHK)

  14. Update on the Development and Validation of MERCURY: A Modern, Monte Carlo Particle Transport Code

    SciTech Connect

    Procassini, R J; Taylor, J M; McKinley, M S; Greenman, G M; Cullen, D E; O'Brien, M J; Beck, B R; Hagmann, C A

    2005-06-06

    An update on the development and validation of the MERCURY Monte Carlo particle transport code is presented. MERCURY is a modern, parallel, general-purpose Monte Carlo code being developed at the Lawrence Livermore National Laboratory. During the past year, several major algorithm enhancements have been completed. These include the addition of particle trackers for 3-D combinatorial geometry (CG), 1-D radial meshes, 2-D quadrilateral unstructured meshes, as well as a feature known as templates for defining recursive, repeated structures in CG. New physics capabilities include an elastic-scattering neutron thermalization model, support for continuous energy cross sections and S ({alpha}, {beta}) molecular bound scattering. Each of these new physics features has been validated through code-to-code comparisons with another Monte Carlo transport code. Several important computer science features have been developed, including an extensible input-parameter parser based upon the XML data description language, and a dynamic load-balance methodology for efficient parallel calculations. This paper discusses the recent work in each of these areas, and describes a plan for future extensions that are required to meet the needs of our ever expanding user base.

  15. Multidimensional electron-photon transport with standard discrete ordinates codes

    SciTech Connect

    Drumm, C.R.

    1995-12-31

    A method is described for generating electron cross sections that are compatible with standard discrete ordinates codes without modification. There are many advantages of using an established discrete ordinates solver, e.g. immediately available adjoint capability. Coupled electron-photon transport capability is needed for many applications, including the modeling of the response of electronics components to space and man-made radiation environments. The cross sections have been successfully used in the DORT, TWODANT and TORT discrete ordinates codes. The cross sections are shown to provide accurate and efficient solutions to certain multidimensional electronphoton transport problems.

  16. Dopamine D1, D2, D3 Receptors, Vesicular Monoamine Transporter Type-2 (VMAT2) and Dopamine Transporter (DAT) Densities in Aged Human Brain

    PubMed Central

    Sun, Jianjun; Xu, Jinbin; Cairns, Nigel J.; Perlmutter, Joel S.; Mach, Robert H.

    2012-01-01

    The dopamine D1, D2, D3 receptors, vesicular monoamine transporter type-2 (VMAT2), and dopamine transporter (DAT) densities were measured in 11 aged human brains (aged 77–107.8, mean: 91 years) by quantitative autoradiography. The density of D1 receptors, VMAT2, and DAT was measured using [3H]SCH23390, [3H]dihydrotetrabenazine, and [3H]WIN35428, respectively. The density of D2 and D3 receptors was calculated using the D3-preferring radioligand, [3H]WC-10 and the D2-preferring radioligand [3H]raclopride using a mathematical model developed previously by our group. Dopamine D1, D2, and D3 receptors are extensively distributed throughout striatum; the highest density of D3 receptors occurred in the nucleus accumbens (NAc). The density of the DAT is 10–20-fold lower than that of VMAT2 in striatal regions. Dopamine D3 receptor density exceeded D2 receptor densities in extrastriatal regions, and thalamus contained a high level of D3 receptors with negligible D2 receptors. The density of dopamine D1 linearly correlated with D3 receptor density in the thalamus. The density of the DAT was negligible in the extrastriatal regions whereas the VMAT2 was expressed in moderate density. D3 receptor and VMAT2 densities were in similar level between the aged human and aged rhesus brain samples, whereas aged human brain samples had lower range of densities of D1 and D2 receptors and DAT compared with the aged rhesus monkey brain. The differential density of D3 and D2 receptors in human brain will be useful in the interpretation of PET imaging studies in human subjects with existing radiotracers, and assist in the validation of newer PET radiotracers having a higher selectivity for dopamine D2 or D3 receptors. PMID:23185343

  17. Validation of a coupled reactive transport code in porous media

    NASA Astrophysics Data System (ADS)

    Mugler, C.; Montarnal, P.; Dimier, A.

    2003-04-01

    The safety assessment of nuclear waste disposals needs to predict the migration of radionuclides and chemical species through a geological medium. It is therefore necessary to develop and assess qualified and validated tools which integrate both the transport mechanisms through the geological media and the chemical mechanisms governing the mobility of radionuclides. In this problem, both geochemical and hydrodynamic phenomena are tightly linked together. That is the reason why the French Nuclear Energy Agency (CEA) and the French Agency for the Management of Radioactive Wastes (ANDRA) are conjointly developping a coupled reactive transport code that solves simultaneously a geochemical model and a transport model. This code, which is part of the software project ALLIANCES, leans on the libraries of two geochemical codes solving the complex ensemble of reacting chemical species: CHESS and PHREEQC. Geochemical processes considered here include ion exchange, redox reactions, acid-base reactions, surface complexation and mineral dissolution and/or precipitation. Transport is simulated using the mixed-hybrid finite element scheme CAST3M or the finite volume scheme MT3D. All together solve Darcy's law and simulate several hydrological processes such as advection, diffusion and dispersion. The coupling algorithm is an iterative sequential algorithm. Several analytical test cases have been defined and used to validate the reactive transport code. Numerical results can be compared to analytical solutions.

  18. DANTSYS: A diffusion accelerated neutral particle transport code system

    SciTech Connect

    Alcouffe, R.E.; Baker, R.S.; Brinkley, F.W.; Marr, D.R.; O`Dell, R.D.; Walters, W.F.

    1995-06-01

    The DANTSYS code package includes the following transport codes: ONEDANT, TWODANT, TWODANT/GQ, TWOHEX, and THREEDANT. The DANTSYS code package is a modular computer program package designed to solve the time-independent, multigroup discrete ordinates form of the boltzmann transport equation in several different geometries. The modular construction of the package separates the input processing, the transport equation solving, and the post processing (or edit) functions into distinct code modules: the Input Module, one or more Solver Modules, and the Edit Module, respectively. The Input and Edit Modules are very general in nature and are common to all the Solver Modules. The ONEDANT Solver Module contains a one-dimensional (slab, cylinder, and sphere), time-independent transport equation solver using the standard diamond-differencing method for space/angle discretization. Also included in the package are solver Modules named TWODANT, TWODANT/GQ, THREEDANT, and TWOHEX. The TWODANT Solver Module solves the time-independent two-dimensional transport equation using the diamond-differencing method for space/angle discretization. The authors have also introduced an adaptive weighted diamond differencing (AWDD) method for the spatial and angular discretization into TWODANT as an option. The TWOHEX Solver Module solves the time-independent two-dimensional transport equation on an equilateral triangle spatial mesh. The THREEDANT Solver Module solves the time independent, three-dimensional transport equation for XYZ and RZ{Theta} symmetries using both diamond differencing with set-to-zero fixup and the AWDD method. The TWODANT/GQ Solver Module solves the 2-D transport equation in XY and RZ symmetries using a spatial mesh of arbitrary quadrilaterals. The spatial differencing method is based upon the diamond differencing method with set-to-zero fixup with changes to accommodate the generalized spatial meshing.

  19. Differential Cross Section Kinematics for 3-dimensional Transport Codes

    NASA Technical Reports Server (NTRS)

    Norbury, John W.; Dick, Frank

    2008-01-01

    In support of the development of 3-dimensional transport codes, this paper derives the relevant relativistic particle kinematic theory. Formulas are given for invariant, spectral and angular distributions in both the lab (spacecraft) and center of momentum frames, for collisions involving 2, 3 and n - body final states.

  20. Description of transport codes for space radiation shielding.

    PubMed

    Kim, Myung-Hee Y; Wilson, John W; Cucinotta, Francis A

    2012-11-01

    Exposure to ionizing radiation in the space environment is one of the hazards faced by crews in space missions. As space radiations traverse spacecraft, habitat shielding, or tissues, their energies and compositions are altered by interactions with the shielding. Modifications to the radiation fields arise from atomic interactions of charged particles with orbital electrons and nuclear interactions leading to projectile and target fragmentation, including secondary particles such as neutrons, protons, mesons, and nuclear recoils. The transport of space radiation through shielding can be simulated using Monte Carlo techniques or deterministic solutions of the Boltzmann equation. To determine shielding requirements and to resolve radiation constraints for future human missions, the shielding evaluation of a spacecraft concept is required as an early step in the design process. To do this requires (1) accurate knowledge of space environmental models to define the boundary condition for transport calculations, (2) transport codes with detailed shielding and body geometry models to determine particle transmission into areas of internal shielding and at each critical body organ, and (3) the assessment of organ dosimetric quantities and biological risks by applying the corresponding response models for space radiation against the particle spectra that have been accurately determined from the transport code. This paper reviews current transport codes and analyzes their accuracy through comparison to laboratory and spaceflight data. This paper also introduces a probabilistic risk assessment approach for the evaluation of radiation shielding. PMID:23032892

  1. Boltzmann Transport Code Update: Parallelization and Integrated Design Updates

    NASA Technical Reports Server (NTRS)

    Heinbockel, J. H.; Nealy, J. E.; DeAngelis, G.; Feldman, G. A.; Chokshi, S.

    2003-01-01

    The on going efforts at developing a web site for radiation analysis is expected to result in an increased usage of the High Charge and Energy Transport Code HZETRN. It would be nice to be able to do the requested calculations quickly and efficiently. Therefore the question arose, "Could the implementation of parallel processing speed up the calculations required?" To answer this question two modifications of the HZETRN computer code were created. The first modification selected the shield material of Al(2219) , then polyethylene and then Al(2219). The modified Fortran code was labeled 1SSTRN.F. The second modification considered the shield material of CO2 and Martian regolith. This modified Fortran code was labeled MARSTRN.F.

  2. 1D and 3D anthropometric data application on public transport vehicle layout and on oil and gas laboratories work environment design.

    PubMed

    Pastura, F C H; Guimarães, C P; Zamberlan, M C P; Cid, G L; Santos, V S; Streit, P; Paranhos, A G; Cobbe, R T; Cobbe, K T; Batista, D S

    2012-01-01

    The goal of this paper is to present 1D and 3D anthropometric data applied to two distinct design situations: one related to the interior layout of a public transport vehicle and another one related to oil and gas laboratories work environment design. On this study, the 1D anthropometric data were extracted from the Brazilian anthropometric database developed by INT and the 3D anthropometric data were obtained using a Cyberware 3D whole body scanner. A second purpose of this paper is to present the 3D human scanning data as a tool that can help designers on decision making.

  3. CTCN: Colloid transport code -- nuclear; A user`s manual

    SciTech Connect

    Jain, R.

    1993-09-01

    This report describes the CTCN computer code, designed to solve the equations of transient colloidal transport of radionuclides in porous and fractured media. This Fortran 77 package solves systems of coupled nonlinear differential-algebraic equations with a wide range of boundary conditions. The package uses the Method of Lines technique with a special section which forms finite-difference discretizations in up to four spatial dimensions to automatically convert the system into a set of ordinary differential equations. The CTCN code then solves these equations using a robust, efficient ODE solver. Thus CTCN can be used to solve population balance equations along with the usual transport equations to model colloid transport processes or as a general problem solver to treat up to four-dimensional differential-algebraic systems.

  4. Colloid transport code-nuclear user`s manual

    SciTech Connect

    Jain, R.

    1992-04-03

    This report describes the CTCN computer code, designed to solve the equations of transient colloidal transport of radionuclides in porous and fractured media. This Fortran 77 package solves systems of coupled nonlinear differential equations with a wide range of boundary conditions. The package uses the Method of Lines technique with a special section which forms finite-difference discretizations in up to four spatial dimensions to automatically convert the system into a set of ordinary differential equations. The CTCN code then solves these equations using a robust, efficient ODE solver. Thus CTCN can be used to solve population balance equations along with the usual transport equations to model colloid transport processes or as a general problem solver to treat up to four-dimensional differential systems.

  5. Radial transport dynamics studies of SMBI with a newly developed TPSMBI code

    NASA Astrophysics Data System (ADS)

    Wang, Ya-Hui; Guo, Wen-Feng; Wang, Zhan-Hui; Ren, Qi-Long; Sun, Ai-Ping; Xu, Min; Wang, Ai-Ke; Xiang, Nong

    2016-10-01

    In tokamak plasma fueling, supersonic molecule beam injection (SMBI) with a higher fueling efficiency and a deeper penetration depth than the traditional gas puffing method has been developed and widely applied to many tokamak devices. It is crucial to study the transport dynamics of SMBI to improve its fueling efficiency, especially in the high confinement regime. A new one-dimensional (1D) code of TPSMBI has also been developed recently based on a six-field SMBI model in cylindrical coordinate. It couples plasma density and heat radial transport equations together with neutral density transport equations for both molecules and atoms and momentum radial transport equations for molecules. The dominant particle collisional interactions between plasmas and neutrals, such as molecule dissociation, atom ionization and charge-exchange effects, are included in the model. The code is verified to be correct with analytical solutions and also benchmarked well with the trans-neut module of BOUT++ code. Time-dependent radial transport dynamics and mean profile evolution are studied during SMBI with the TPSMBI code in both slab and cylindrical coordinates. Along the SMBI path, plasma density increases due to particle fuelling, while plasma temperature decreases due to heat cooling. Being different from slab coordinate, the curvature effect leads to larger front densities of molecule and atom during SMBI in cylindrical coordinate simulation. Project supported by the National Natural Science Foundation of China (Grant Nos. 11575055, 11375053, and 11475219) and the National Magnetic Confinement Fusion Science Program of China (Grant Nos. 2013GB111005, 2014GB108004, and 2015GB110001).

  6. Bed-load transport modelling by coupling an empirical routing scheme and a hydrological-1-D-hydrodynamic model - case study application for a large alpine valley

    NASA Astrophysics Data System (ADS)

    Gems, B.; Achleitner, S.; Plörer, M.; Schöberl, F.; Huttenlau, M.; Aufleger, M.

    2012-12-01

    Sediment transport in mountain rivers and torrents is a substantial process within the assessment of flood related hazard potential and vulnerability in alpine catchments. Focusing on fluvial transport processes, river bed erosion and deposition considerably affects the extent of inundation. The present work deals with scenario-specific bed-load transport modelling in a large alpine valley in the Austrian Alps. A routing scheme founding on empirical equations for the calculation of transport capacities, incipient motion conditions and drag forces is set up and applied to the case study area for two historic flood events. The required hydraulic data result from a distributed hydrological-1-D-hydraulic model. Hydraulics and bed-load transport are simulated sequentially providing a technically well-founded and feasible methodology for the estimation of bed-load transport rates during flood events.

  7. NERO- a post-maximum supernova radiation transport code

    NASA Astrophysics Data System (ADS)

    Maurer, I.; Jerkstrand, A.; Mazzali, P. A.; Taubenberger, S.; Hachinger, S.; Kromer, M.; Sim, S.; Hillebrandt, W.

    2011-12-01

    The interpretation of supernova (SN) spectra is essential for deriving SN ejecta properties such as density and composition, which in turn can tell us about their progenitors and the explosion mechanism. A very large number of atomic processes are important for spectrum formation. Several tools for calculating SN spectra exist, but they mainly focus on the very early or late epochs. The intermediate phase, which requires a non-local thermodynamic equilibrium (NLTE) treatment of radiation transport has rarely been studied. In this paper, we present a new SN radiation transport code, NERO, which can look at those epochs. All the atomic processes are treated in full NLTE, under a steady-state assumption. This is a valid approach between roughly 50 and 500 days after the explosion depending on SN type. This covers the post-maximum photospheric and the early and the intermediate nebular phase. As a test, we compare NERO to the radiation transport code of Jerkstrand, Fransson & Kozma and to the nebular code of Mazzali et al. All three codes have been developed independently and a comparison provides a valuable opportunity to investigate their reliability. Currently, NERO is one-dimensional and can be used for predicting spectra of synthetic explosion models or for deriving SN properties by spectral modelling. To demonstrate this, we study the spectra of the 'normal' Type Ia supernova (SN Ia) 2005cf between 50 and 350 days after the explosion and identify most of the common SN Ia line features at post-maximum epochs.

  8. The High-Energy Transport Code HETC88

    SciTech Connect

    Alsmiller, R.G. Jr.; Alsmiller, F.S.; Gabriel, T.A.; Hermann, O.W.; Barnes, J.M.

    1989-01-01

    An upgraded version, HETC88, of the previously available High-Energy Transport Code HETC is briefly described. In the upgraded code, the particle production model from hadron-nucleus nonelastic collisions at energies greater than 5 GeV has been revised. At nucleon and ion energies below 5 GeV, HETC88 is not different from the code previously available. In particular, provision is still made to allow neutrons with energies less than or equal to20 MeV to be transported by none of the available codes designed for low-energy neutron transport. Calculated results for the longitudinal distribution of the flux of neutrons with energy greater than or equal to40 KeV in the Tevatron tunnel when 900 GeV protons interact with N/sub 2/ in a warm section are presented and compared with experimental data. Some disagreements between the calculated and measured neutron flux are found. For 20 TeV protons incident on a large cylindrical iron target, calculated ''star'' density results from HETC88, FLUKA87, CASIM, and MARS10 are also compared. 22 refs., 3 figs.

  9. The Initial Atmospheric Transport (IAT) Code: Description and Validation

    SciTech Connect

    Morrow, Charles W.; Bartel, Timothy James

    2015-10-01

    The Initial Atmospheric Transport (IAT) computer code was developed at Sandia National Laboratories as part of their nuclear launch accident consequences analysis suite of computer codes. The purpose of IAT is to predict the initial puff/plume rise resulting from either a solid rocket propellant or liquid rocket fuel fire. The code generates initial conditions for subsequent atmospheric transport calculations. The Initial Atmospheric Transfer (IAT) code has been compared to two data sets which are appropriate to the design space of space launch accident analyses. The primary model uncertainties are the entrainment coefficients for the extended Taylor model. The Titan 34D accident (1986) was used to calibrate these entrainment settings for a prototypic liquid propellant accident while the recent Johns Hopkins University Applied Physics Laboratory (JHU/APL, or simply APL) large propellant block tests (2012) were used to calibrate the entrainment settings for prototypic solid propellant accidents. North American Meteorology (NAM )formatted weather data profiles are used by IAT to determine the local buoyancy force balance. The IAT comparisons for the APL solid propellant tests illustrate the sensitivity of the plume elevation to the weather profiles; that is, the weather profile is a dominant factor in determining the plume elevation. The IAT code performed remarkably well and is considered validated for neutral weather conditions.

  10. Code System to Calculate Waste-Isolation Flow and Transport.

    2001-01-26

    Version 00 Distribution is restricted to the United States Only. SWIFT2 (Sandia Waste Isolation Flow and Transport) is a fully transient, three-dimensional code that solves the coupled equations for transport in geologic media. The processes considered are fluid flow, heat transport, brine migration, and radionuclide-chain transport. Flow, heat and brine transport are coupled via fluid density, fluid viscosity, and porosity. Together they provide the velocity field on which the radionuclide transport depends. Both porous andmore » fractured media are considered. SWIFT2 was developed for use in the analysis of deep geologic nuclear waste-disposal facilities. However, it may be used in other areas such as waste injection into saline aquifers and heat storage in aquifers. Both dual-porosity and discrete-fracture conceptualizations may be considered for the fractured zones. A variable density is included throughout, and a variety of options are available to facilitate the various uses of the code.« less

  11. 3D unstructured-mesh radiation transport codes

    SciTech Connect

    Morel, J.

    1997-12-31

    Three unstructured-mesh radiation transport codes are currently being developed at Los Alamos National Laboratory. The first code is ATTILA, which uses an unstructured tetrahedral mesh in conjunction with standard Sn (discrete-ordinates) angular discretization, standard multigroup energy discretization, and linear-discontinuous spatial differencing. ATTILA solves the standard first-order form of the transport equation using source iteration in conjunction with diffusion-synthetic acceleration of the within-group source iterations. DANTE is designed to run primarily on workstations. The second code is DANTE, which uses a hybrid finite-element mesh consisting of arbitrary combinations of hexahedra, wedges, pyramids, and tetrahedra. DANTE solves several second-order self-adjoint forms of the transport equation including the even-parity equation, the odd-parity equation, and a new equation called the self-adjoint angular flux equation. DANTE also offers three angular discretization options: $S{_}n$ (discrete-ordinates), $P{_}n$ (spherical harmonics), and $SP{_}n$ (simplified spherical harmonics). DANTE is designed to run primarily on massively parallel message-passing machines, such as the ASCI-Blue machines at LANL and LLNL. The third code is PERICLES, which uses the same hybrid finite-element mesh as DANTE, but solves the standard first-order form of the transport equation rather than a second-order self-adjoint form. DANTE uses a standard $S{_}n$ discretization in angle in conjunction with trilinear-discontinuous spatial differencing, and diffusion-synthetic acceleration of the within-group source iterations. PERICLES was initially designed to run on workstations, but a version for massively parallel message-passing machines will be built. The three codes will be described in detail and computational results will be presented.

  12. 1D Thermal-Hydraulic-Chemical (THC) Reactive transport modeling for deep geothermal systems: A case study of Groß Schönebeck reservoir, Germany

    NASA Astrophysics Data System (ADS)

    Driba, D. L.; De Lucia, M.; Peiffer, S.

    2014-12-01

    Fluid-rock interactions in geothermal reservoirs are driven by the state of disequilibrium that persists among solid and solutes due to changing temperature and pressure. During operation of enhanced geothermal systems, injection of cooled water back into the reservoir disturbs the initial thermodynamic equilibrium between the reservoir and its geothermal fluid, which may induce modifications in permeability through changes in porosity and pore space geometry, consequently bringing about several impairments to the overall system.Modeling of fluid-rock interactions induced by injection of cold brine into Groß Schönebeck geothermal reservoir system situated in the Rotliegend sandstone at 4200m depth have been done by coupling geochemical modeling Code Phreeqc with OpenGeoSys. Through batch modeling the re-evaluation of the measured hydrochemical composition of the brine has been done using Quintessa databases, the results from the calculation indicate that a mineral phases comprising of K-feldspar, hematite, Barite, Calcite and Dolomite was found to match the hypothesis of equilibrium with the formation fluid, Reducing conditions are presumed in the model (pe = -3.5) in order to match the amount of observed dissolved Fe and thus considered as initial state for the reactive transport modeling. based on a measured composition of formation fluids and the predominant mineralogical assemblage of the host rock, a preliminary 1D Reactive transport modeling (RTM) was run with total time set to 30 years; results obtained for the initial simulation revealed that during this period, no significant change is evident for K-feldspar. Furthermore, the precipitation of calcite along the flow path in the brine results in a drop of pH from 6.2 to a value of 5.2 noticed over the simulated period. The circulation of cooled fluid in the reservoir is predicted to affect the temperature of the reservoir within the first 100 -150m from the injection well. Examination of porosity change in

  13. Transport calculations for nuclear analyses: Theory and guidelines for effective use of transport codes

    SciTech Connect

    O'Dell, R.D.; Alcouffe, R.E.

    1987-09-01

    This report is for the serious user of discrete ordinates transport computer codes for performing nuclear analysis calculations. The first section after the introduction provides a reasonably thorough mathematical description of the analytic Boltzmann transport equation. Next is a section on the numerical discretization of the energy, angle, and space variables in the transport equation, along with an introduction to the source iteration method. The fourth section provides numerical details and features pertinent to discrete ordinates codes. That section details angular quadrature, spatial discretization methods, iteration acceleration methods, and search capabilities. The fifth section presents considerations in choosing a discrete ordinates code for use, and this is followed by a section on typical discrete ordinates codes available throughout the world. The report ends with some guidance for the user. 73 refs., 18 figs., 13 tabs.

  14. An interactive interface to the beam optics code 'transport'

    SciTech Connect

    Silbar, R.R.

    1988-01-01

    The Fortran code TRANSPORT for calculating beam optics properties has been converted to run on a Symbolics Lisp Machine. Using the rich graphics and object-oriented programming environment provided by the KEE expert system shell, a beam designer can now use TRANSPORT in a manner similar to that of a user of a CAD/CAM tool or a spreadsheet. Beamline elements can be modified, added, or selected at the user's screen, with the changes in the beam ellipses, envelopes, and transfer matrices being re-computed and re-displayed within a few seconds.

  15. Validation of a comprehensive space radiation transport code.

    PubMed

    Shinn, J L; Cucinotta, F A; Simonsen, L C; Wilson, J W; Badavi, F F; Badhwar, G D; Miller, J; Zeitlin, C; Heilbronn, L; Tripathi, R K; Clowdsley, M S; Heinbockel, J H; Xapsos, M A

    1998-12-01

    The HZETRN code has been developed over the past decade to evaluate the local radiation fields within sensitive materials on spacecraft in the space environment. Most of the more important nuclear and atomic processes are now modeled and evaluation within a complex spacecraft geometry with differing material components, including transition effects across boundaries of dissimilar materials, are included. The atomic/nuclear database and transport procedures have received limited validation in laboratory testing with high energy ion beams. The codes have been applied in design of the SAGE-III instrument resulting in material changes to control injurious neutron production, in the study of the Space Shuttle single event upsets, and in validation with space measurements (particle telescopes, tissue equivalent proportional counters, CR-39) on Shuttle and Mir. The present paper reviews the code development and presents recent results in laboratory and space flight validation.

  16. Simulation of neoclassical transport with the continuum gyrokinetic code COGENT

    DOE PAGES

    Dorf, M. A.; Cohen, R. H.; Dorr, M.; Rognlien, T.; Hittinger, J.; Compton, J.; Colella, P.; Martin, D.; McCorquodale, P.

    2013-01-25

    The development of the continuum gyrokinetic code COGENT for edge plasma simulations is reported. The present version of the code models a nonlinear axisymmetric 4D (R, v∥, μ) gyrokinetic equation coupled to the long-wavelength limit of the gyro-Poisson equation. Here, R is the particle gyrocenter coordinate in the poloidal plane, and v∥ and μ are the guiding center velocity parallel to the magnetic field and the magnetic moment, respectively. The COGENT code utilizes a fourth-order finite-volume (conservative) discretization combined with arbitrary mapped multiblock grid technology (nearly field-aligned on blocks) to handle the complexity of tokamak divertor geometry with high accuracy.more » Furthermore, topics presented are the implementation of increasingly detailed model collision operators, and the results of neoclassical transport simulations including the effects of a strong radial electric field characteristic of a tokamak pedestal under H-mode conditions.« less

  17. Simulation of neoclassical transport with the continuum gyrokinetic code COGENT

    SciTech Connect

    Dorf, M. A.; Cohen, R. H.; Dorr, M.; Rognlien, T.; Hittinger, J.; Compton, J.; Colella, P.; Martin, D.; McCorquodale, P.

    2013-01-25

    The development of the continuum gyrokinetic code COGENT for edge plasma simulations is reported. The present version of the code models a nonlinear axisymmetric 4D (R, v∥, μ) gyrokinetic equation coupled to the long-wavelength limit of the gyro-Poisson equation. Here, R is the particle gyrocenter coordinate in the poloidal plane, and v∥ and μ are the guiding center velocity parallel to the magnetic field and the magnetic moment, respectively. The COGENT code utilizes a fourth-order finite-volume (conservative) discretization combined with arbitrary mapped multiblock grid technology (nearly field-aligned on blocks) to handle the complexity of tokamak divertor geometry with high accuracy. Furthermore, topics presented are the implementation of increasingly detailed model collision operators, and the results of neoclassical transport simulations including the effects of a strong radial electric field characteristic of a tokamak pedestal under H-mode conditions.

  18. Users manual for the UEDGE edge-plasma transport code

    SciTech Connect

    Rognlien, T D; Rensink, M E; Smith, G R

    2000-01-10

    Operational details are given for the two-dimensional UEDGE edge-plasma transport code. The model applies to nearly fully-ionized plasmas in a strong magnetic field. Equations are solved for the plasma density, velocity along the magnetic field, electron temperature, ion temperature, and electrostatic potential. In addition, fluid models of neutrals species are included or the option to couple to a Monte Carlo code description of the neutrals. Multi-species ion mixtures can be simulated. The physical equations are discretized by a finite-difference procedure, and the resulting system of algebraic equations are solved by fully-implicit techniques. The code can be used to follow time-dependent solutions or to find steady-state solutions by direct iteration.

  19. Reduced Fast Ion Transport Model For The Tokamak Transport Code TRANSP

    SciTech Connect

    Podesta,, Mario; Gorelenkova, Marina; White, Roscoe

    2014-02-28

    Fast ion transport models presently implemented in the tokamak transport code TRANSP [R. J. Hawryluk, in Physics of Plasmas Close to Thermonuclear Conditions, CEC Brussels, 1 , 19 (1980)] are not capturing important aspects of the physics associated with resonant transport caused by instabilities such as Toroidal Alfv en Eigenmodes (TAEs). This work describes the implementation of a fast ion transport model consistent with the basic mechanisms of resonant mode-particle interaction. The model is formulated in terms of a probability distribution function for the particle's steps in phase space, which is consistent with the MonteCarlo approach used in TRANSP. The proposed model is based on the analysis of fast ion response to TAE modes through the ORBIT code [R. B. White et al., Phys. Fluids 27 , 2455 (1984)], but it can be generalized to higher frequency modes (e.g. Compressional and Global Alfv en Eigenmodes) and to other numerical codes or theories.

  20. New Parallel computing framework for radiation transport codes

    SciTech Connect

    Kostin, M.A.; Mokhov, N.V.; Niita, K.; /JAERI, Tokai

    2010-09-01

    A new parallel computing framework has been developed to use with general-purpose radiation transport codes. The framework was implemented as a C++ module that uses MPI for message passing. The module is significantly independent of radiation transport codes it can be used with, and is connected to the codes by means of a number of interface functions. The framework was integrated with the MARS15 code, and an effort is under way to deploy it in PHITS. Besides the parallel computing functionality, the framework offers a checkpoint facility that allows restarting calculations with a saved checkpoint file. The checkpoint facility can be used in single process calculations as well as in the parallel regime. Several checkpoint files can be merged into one thus combining results of several calculations. The framework also corrects some of the known problems with the scheduling and load balancing found in the original implementations of the parallel computing functionality in MARS15 and PHITS. The framework can be used efficiently on homogeneous systems and networks of workstations, where the interference from the other users is possible.

  1. Multiple mobility edges in a 1D Aubry chain with Hubbard interaction in presence of electric field: Controlled electron transport

    NASA Astrophysics Data System (ADS)

    Saha, Srilekha; Maiti, Santanu K.; Karmakar, S. N.

    2016-09-01

    Electronic behavior of a 1D Aubry chain with Hubbard interaction is critically analyzed in presence of electric field. Multiple energy bands are generated as a result of Hubbard correlation and Aubry potential, and, within these bands localized states are developed under the application of electric field. Within a tight-binding framework we compute electronic transmission probability and average density of states using Green's function approach where the interaction parameter is treated under Hartree-Fock mean field scheme. From our analysis we find that selective transmission can be obtained by tuning injecting electron energy, and thus, the present model can be utilized as a controlled switching device.

  2. VERIFICATION OF TRANSPORT CODES BY THE METHOD OF MANUFACTURED SOLUTIONS: THE ATTILA EXPERIENCE

    SciTech Connect

    S. D. PAUTZ

    2001-03-19

    We extend the Method of Manufactured Solutions (MMS) to the verification of transport codes. We derive analytic fixed sources required by the MMS procedure for several types of transport problems and apply the method to the Attila transport code. By means of this method we discover and correct several coding mistakes in Attila and ultimately verify its correct implementation for the problems studied. Our studies reveal that the MMS procedure is a useful tool for transport code development.

  3. Status of the solar and infrared radiation submodels in the LLNL 1-D and 2-D chemical-transport models

    SciTech Connect

    Grant, K.E.; Taylor, K.E.; Ellis, J.S.; Wuebbles, D.J.

    1987-07-01

    The authors have implemented a series of state of the art radiation transport submodels in previously developed one dimensional and two dimensional chemical transport models of the troposphere and stratosphere. These submodels provide the capability of calculating accurate solar and infrared heating rates. They are a firm basis for further radiation submodel development as well as for studying interactions between radiation and model dynamics under varying conditions of clear sky, clouds, and aerosols. 37 refs., 3 figs.

  4. Overview of Particle and Heavy Ion Transport Code System PHITS

    NASA Astrophysics Data System (ADS)

    Sato, Tatsuhiko; Niita, Koji; Matsuda, Norihiro; Hashimoto, Shintaro; Iwamoto, Yosuke; Furuta, Takuya; Noda, Shusaku; Ogawa, Tatsuhiko; Iwase, Hiroshi; Nakashima, Hiroshi; Fukahori, Tokio; Okumura, Keisuke; Kai, Tetsuya; Chiba, Satoshi; Sihver, Lembit

    2014-06-01

    A general purpose Monte Carlo Particle and Heavy Ion Transport code System, PHITS, is being developed through the collaboration of several institutes in Japan and Europe. The Japan Atomic Energy Agency is responsible for managing the entire project. PHITS can deal with the transport of nearly all particles, including neutrons, protons, heavy ions, photons, and electrons, over wide energy ranges using various nuclear reaction models and data libraries. It is written in Fortran language and can be executed on almost all computers. All components of PHITS such as its source, executable and data-library files are assembled in one package and then distributed to many countries via the Research organization for Information Science and Technology, the Data Bank of the Organization for Economic Co-operation and Development's Nuclear Energy Agency, and the Radiation Safety Information Computational Center. More than 1,000 researchers have been registered as PHITS users, and they apply the code to various research and development fields such as nuclear technology, accelerator design, medical physics, and cosmic-ray research. This paper briefly summarizes the physics models implemented in PHITS, and introduces some important functions useful for specific applications, such as an event generator mode and beam transport functions.

  5. Glucose transporter type I deficiency (G1D) at 25 (1990–2015): Presumptions, facts and the lives of persons with this rare disease

    PubMed Central

    Pascual, Juan M.; Ronen, Gabriel M.

    2015-01-01

    As is often the case for rare diseases, the number of published reviews and case reports of Glucose transporter type I deficiency (G1D) approaches or exceeds that of original research. This can indicate medical interest, but also scientific stagnation. In assessing this state of affairs here, we focus not on what is peculiar or disparate about G1D, but on the assumptions that have reigned thus far undisputed, and critique them as a potential impediment to progress. To summarize the most common G1D phenotype, we trace the 25-year story of G1D in parallel with the natural history of one of two index patients, identified in 1990 by one of us (G.M.R.) and brought up to date by the other (J.M.P.) while later examining widely-repeated but little-scrutinized statements. Among them are those that pertain to assumptions about brain fuels; energy-failure; cerebrospinal glucose concentration; the purpose of ketogenic diet; the role of the defective blood brain barrier; genotype-phenotype correlations; a bewildering array of phenotypes; ictogenesis, seizures and the electroencephalogram; the use of mice to model the disorder; and what treatments may and may not be expected to accomplish. We reach the forgone conclusion that the proper study of mankind - and of one of its ailments (G1D) - is man itself (rather than mice, isolated cells or extrapolated inferences), and propose a framework for rigorous investigation that we hope will lead to a better understanding and to better treatments for this and for rare disorders in general. These considerations, together with experience drawn from other disorders, lead, as a logical consequence, to the nullification of the view that therapeutic development (i.e., trials) for rare diseases could or should be accelerated without the most vigorous scientific scrutiny: Trial and error constitute an inseparable couple, such that, at the present time, hastening the former is bound to precipitate the latter. PMID:26341673

  6. Radiative Transport for a Smoothed Particle Hydrodynamic Code

    NASA Astrophysics Data System (ADS)

    Lang, Bernd; Kessel-Deynet, Olaf; Burkert, Andreas

    One crude approximation to describe the effect of Radiative Transport in SPH simulations is to introduce a density dependent polytropic index in the equation of state (Matthew R. Bate 1998), which is larger than one if the medium becomes optically thick. By doing this one fixes the system to a special density-temperature dependence. But in principle the system should have the possibility to realize a variety of different density-temperature dependencies if radiative transport is involved and arbitrary heating and cooling functions can be used. We combine the advantages of the SPH Code with an algorithm describing a flux limited diffusive radiative transport to develop a RHD-Code. Flux limited diffusion involves the Rosseland-means of the absorption and scattering coefficients. To calculate this coefficients we use the model from Preibisch et al. 1993. This will restrict our simulations to low temperatures (T <= 1000 K) and high densities (ρ >= 103 cm-3) but on the other hand keeps the code as simple and as fast as possible. For a given energy-density distribution, the radiation field evolves towards the equilibrium solution on a time-scale much smaller than the typical dynamical time-step for the hydrodynamic equations. So the RT equations have to be solved implicit. To do this we use the nice convergence features of the Successive Over-Relaxing (SOR) method. The focus of the simulations than will be on the prestellar phase where molecular cloud cores become optically thick. The central temperature is still low (T = 10 dots 500 K) and thus the ionization and dissociation degree is low and nearly constant.

  7. Coupling WEPP and 3ST1D models for improved prediction of flow and sediment transport at watershed scales

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Watershed modeling is a key component of watershed management that involves the simulation of hydrological and fluvial processes for predicting flow and sediment transport within a watershed. For practical purposes, most numerical models have been developed to simulate either runoff and soil erosion...

  8. Domain decomposition methods for a parallel Monte Carlo transport code

    SciTech Connect

    Alme, H J; Rodrigue, G H; Zimmerman, G B

    1999-01-27

    Achieving parallelism in simulations that use Monte Carlo transport methods presents interesting challenges. For problems that require domain decomposition, load balance can be harder to achieve. The Monte Carlo transport package may have to operate with other packages that have different optimal domain decompositions for a given problem. To examine some of these issues, we have developed a code that simulates the interaction of a laser with biological tissue; it uses a Monte Carlo method to simulate the laser and a finite element model to simulate the conduction of the temperature field in the tissue. We will present speedup and load balance results obtained for a suite of problems decomposed using a few domain decomposition algorithms we have developed.

  9. First Transport Code Simulations using the TGLF Model

    NASA Astrophysics Data System (ADS)

    Kinsey, J. E.

    2007-11-01

    The first transport code simulations using the newly developed TGLF theory-based transport model [1,2] are presented. TGLF has comprehensive physics to approximate the turbulent transport due to drift-ballooning modes in tokamaks. The TGLF model is a next generation gyro-Landau-fluid model that includes several recent advances that remove the limitations of its predecessor, GLF23. The model solves for the linear eigenmodes of trapped ion and electron modes (TIM, TEM), ion and electron temperature gradient (ITG, ETG) modes and finite beta kinetic ballooning (KB) modes in either shifted circle or shaped geometry [1]. A database of over 400 nonlinear GYRO gyrokinetic simulations has been created [3]. A subset of 140 simulations including Miller shaped geometry has been used to find a model for the saturation levels. Using a simple quasilinear (QL) saturation rule, we find remarkable agreement with the energy and particle fluxes from a wide variety of GYRO simulations for both shaped or circular geometry and also for low aspect ratio. Using this new QL saturation rule along with a new ExB shear quench rule for shaped geometry, we predict the density, temperature, and toroidal rotation profiles in a transport code and compare the results against experimental data in the ITPA Profile Database. We examine the impact of the improved electron physics in the model and the role of elongation and triangularity on the predicted profiles and compare to the results previously obtained using the GLF23 model. [1] G.M. Staebler, J.E. Kinsey, and R.E. Waltz, Phys. Plasmas 12, 102508 (2005). [2] G.M. Staebler, J.E. Kinsey, and R.E. Waltz, to appear in Phys. Plasmas, May(2007). [3] The GYRO database is documented at fusion.gat.com/theory/gyro.

  10. Multidimensional electron-photon transport with standard discrete ordinates codes

    SciTech Connect

    Drumm, C.R.

    1997-04-01

    A method is described for generating electron cross sections that are comparable with standard discrete ordinates codes without modification. There are many advantages of using an established discrete ordinates solver, e.g. immediately available adjoint capability. Coupled electron-photon transport capability is needed for many applications, including the modeling of the response of electronics components to space and man-made radiation environments. The cross sections have been successfully used in the DORT, TWODANT and TORT discrete ordinates codes. The cross sections are shown to provide accurate and efficient solutions to certain multidimensional electron-photon transport problems. The key to the method is a simultaneous solution of the continuous-slowing-down (CSD) portion and elastic-scattering portion of the scattering source by the Goudsmit-Saunderson theory. The resulting multigroup-Legendre cross sections are much smaller than the true scattering cross sections that they represent. Under certain conditions, the cross sections are guaranteed positive and converge with a low-order Legendre expansion.

  11. Multidimensional electron-photon transport with standard discrete ordinates codes

    SciTech Connect

    Drumm, C.R.

    1997-09-01

    A method is described for generating electron cross sections that are compatible with standard discrete ordinates codes without modification. There are many advantages to using an established discrete ordinates solver, e.g., immediately available adjoint capability. Coupled electron-photon transport capability is needed for many applications, including the modeling of the response of electronics components to space and synthetic radiation environments. The cross sections have been successfully used in the DORT, TWODANT, and TORT discrete ordinates codes. The cross sections are shown to provide accurate and efficient solutions to certain multidimensional electron-photon transport problems. The key to the method is a simultaneous solution of the continuous-slowing-down and elastic-scattering portions of the scattering source by the Goudsmit-Saunderson theory. The resulting multigroup-Legendre cross sections are much smaller than the true scattering cross sections that they represent. Under certain conditions, the cross sections are guaranteed positive and converge with a low-order Legendre expansion.

  12. Heptanoate as a neural fuel: energetic and neurotransmitter precursors in normal and glucose transporter I-deficient (G1D) brain

    PubMed Central

    Marin-Valencia, Isaac; Good, Levi B; Ma, Qian; Malloy, Craig R; Pascual, Juan M

    2013-01-01

    It has been postulated that triheptanoin can ameliorate seizures by supplying the tricarboxylic acid cycle with both acetyl-CoA for energy production and propionyl-CoA to replenish cycle intermediates. These potential effects may also be important in other disorders associated with impaired glucose metabolism because glucose supplies, in addition to acetyl-CoA, pyruvate, which fulfills biosynthetic demands via carboxylation. In patients with glucose transporter type I deficiency (G1D), ketogenic diet fat (a source only of acetyl-CoA) reduces seizures, but other symptoms persist, providing the motivation for studying heptanoate metabolism. In this work, metabolism of infused [5,6,7-13C3]heptanoate was examined in the normal mouse brain and in G1D by 13C-nuclear magnetic resonance spectroscopy, gas chromatography-mass spectrometry (GC-MS), and liquid chromatography-mass spectrometry (LC-MS). In both groups, plasma glucose was enriched in 13C, confirming gluconeogenesis from heptanoate. Acetyl-CoA and glutamine levels became significantly higher in the brain of G1D mice relative to normal mice. In addition, brain glutamine concentration and 13C enrichment were also greater when compared with glutamate in both animal groups, suggesting that heptanoate and/or C5 ketones are primarily metabolized by glia. These results enlighten the mechanism of heptanoate metabolism in the normal and glucose-deficient brain and encourage further studies to elucidate its potential antiepileptic effects in disorders of energy metabolism. PMID:23072752

  13. Modelling plastic scintillator response to gamma rays using light transport incorporated FLUKA code.

    PubMed

    Ranjbar Kohan, M; Etaati, G R; Ghal-Eh, N; Safari, M J; Afarideh, H; Asadi, E

    2012-05-01

    The response function of NE102 plastic scintillator to gamma rays has been simulated using a joint FLUKA+PHOTRACK Monte Carlo code. The multi-purpose particle transport code, FLUKA, has been responsible for gamma transport whilst the light transport code, PHOTRACK, has simulated the transport of scintillation photons through scintillator and lightguide. The simulation results of plastic scintillator with/without light guides of different surface coverings have been successfully verified with experiments.

  14. Physics models in the toroidal transport code PROCTR

    SciTech Connect

    Howe, H.C.

    1990-08-01

    The physics models that are contained in the toroidal transport code PROCTR are described in detail. Time- and space-dependent models are included for the plasma hydrogenic-ion, helium, and impurity densities, the electron and ion temperatures, the toroidal rotation velocity, and the toroidal current profile. Time- and depth-dependent models for the trapped and mobile hydrogenic particle concentrations in the wall and a time-dependent point model for the number of particles in the limiter are also included. Time-dependent models for neutral particle transport, neutral beam deposition and thermalization, fusion heating, impurity radiation, pellet injection, and the radial electric potential are included and recalculated periodically as the time-dependent models evolve. The plasma solution is obtained either in simple flux coordinates, where the radial shift of each elliptical, toroidal flux surface is included to maintain an approximate pressure equilibrium, or in general three-dimensional torsatron coordinates represented by series of helical harmonics. The detailed coupling of the plasma, scrape-off layer, limiter, and wall models through the neutral transport model makes PROCTR especially suited for modeling of recycling and particle control in toroidal plasmas. The model may also be used in a steady-state profile analysis mode for studying energy and particle balances starting with measured plasma profiles.

  15. PRESTO low-level waste transport and risk assessment code

    SciTech Connect

    Little, C.A.; Fields, D.E.; McDowell-Boyer, L.M.; Emerson, C.J.

    1981-01-01

    PRESTO (Prediction of Radiation Effects from Shallow Trench Operations) is a computer code developed under US Environmental Protection Agency (EPA) funding to evaluate possible health effects from shallow land burial trenches. The model is intended to be generic and to assess radionuclide transport, ensuing exposure, and health impact to a static local population for a 1000-y period following the end of burial operations. Human exposure scenarios considered by the model include normal releases (including leaching and operational spillage), human intrusion, and site farming or reclamation. Pathways and processes of transit from the trench to an individual or population inlude: groundwater transport, overland flow, erosion, surface water dilution, resuspension, atmospheric transport, deposition, inhalation, and ingestion of contaminated beef, milk, crops, and water. Both population doses and individual doses are calculated as well as doses to the intruder and farmer. Cumulative health effects in terms of deaths from cancer are calculated for the population over the thousand-year period using a life-table approach. Data bases are being developed for three extant shallow land burial sites: Barnwell, South Carolina; Beatty, Nevada; and West Valley, New York.

  16. Final Report for National Transport Code Collaboration PTRANSP

    SciTech Connect

    Arnold H. Kritz

    2012-06-14

    PTRANSP, which is the predictive version of the TRANSP code, was developed in a collaborative effort involving the Princeton Plasma Physics Laboratory, General Atomics Corporation, Lawrence Livermore National Laboratory, and Lehigh University. The PTRANSP/TRANSP suite of codes is the premier integrated tokamak modeling software in the United States. A production service for PTRANSP/TRANSP simulations is maintained at the Princeton Plasma Physics Laboratory; the server has a simple command line client interface and is subscribed to by about 100 researchers from tokamak projects in the US, Europe, and Asia. This service produced nearly 13000 PTRANSP/TRANSP simulations in the four year period FY 2005 through FY 2008. Major archives of TRANSP results are maintained at PPPL, MIT, General Atomics, and JET. Recent utilization, counting experimental analysis simulations as well as predictive simulations, more than doubled from slightly over 2000 simulations per year in FY 2005 and FY 2006 to over 4300 simulations per year in FY 2007 and FY 2008. PTRANSP predictive simulations applied to ITER increased eight fold from 30 simulations per year in FY 2005 and FY 2006 to 240 simulations per year in FY 2007 and FY 2008, accounting for more than half of combined PTRANSP/TRANSP service CPU resource utilization in FY 2008. PTRANSP studies focused on ITER played a key role in journal articles. Examples of validation studies carried out for momentum transport in PTRANSP simulations were presented at the 2008 IAEA conference. The increase in number of PTRANSP simulations has continued (more than 7000 TRANSP/PTRANSP simulations in 2010) and results of PTRANSP simulations appear in conference proceedings, for example the 2010 IAEA conference, and in peer reviewed papers. PTRANSP provides a bridge to the Fusion Simulation Program (FSP) and to the future of integrated modeling. Through years of widespread usage, each of the many parts of the PTRANSP suite of codes has been thoroughly

  17. OpenGeoSys-GEMS: Hybrid parallelization of a reactive transport code with MPI and threads

    NASA Astrophysics Data System (ADS)

    Kosakowski, G.; Kulik, D. A.; Shao, H.

    2012-04-01

    OpenGeoSys-GEMS is a generic purpose reactive transport code based on the operator splitting approach. The code couples the Finite-Element groundwater flow and multi-species transport modules of the OpenGeoSys (OGS) project (http://www.ufz.de/index.php?en=18345) with the GEM-Selektor research package to model thermodynamic equilibrium of aquatic (geo)chemical systems utilizing the Gibbs Energy Minimization approach (http://gems.web.psi.ch/). The combination of OGS and the GEM-Selektor kernel (GEMS3K) is highly flexible due to the object-oriented modular code structures and the well defined (memory based) data exchange modules. Like other reactive transport codes, the practical applicability of OGS-GEMS is often hampered by the long calculation time and large memory requirements. • For realistic geochemical systems which might include dozens of mineral phases and several (non-ideal) solid solutions the time needed to solve the chemical system with GEMS3K may increase exceptionally. • The codes are coupled in a sequential non-iterative loop. In order to keep the accuracy, the time step size is restricted. In combination with a fine spatial discretization the time step size may become very small which increases calculation times drastically even for small 1D problems. • The current version of OGS is not optimized for memory use and the MPI version of OGS does not distribute data between nodes. Even for moderately small 2D problems the number of MPI processes that fit into memory of up-to-date workstations or HPC hardware is limited. One strategy to overcome the above mentioned restrictions of OGS-GEMS is to parallelize the coupled code. For OGS a parallelized version already exists. It is based on a domain decomposition method implemented with MPI and provides a parallel solver for fluid and mass transport processes. In the coupled code, after solving fluid flow and solute transport, geochemical calculations are done in form of a central loop over all finite

  18. Comparison of space radiation calculations for deterministic and Monte Carlo transport codes

    NASA Astrophysics Data System (ADS)

    Lin, Zi-Wei; Adams, James; Barghouty, Abdulnasser; Randeniya, Sharmalee; Tripathi, Ram; Watts, John; Yepes, Pablo

    For space radiation protection of astronauts or electronic equipments, it is necessary to develop and use accurate radiation transport codes. Radiation transport codes include deterministic codes, such as HZETRN from NASA and UPROP from the Naval Research Laboratory, and Monte Carlo codes such as FLUKA, the Geant4 toolkit and HETC-HEDS. The deterministic codes and Monte Carlo codes complement each other in that deterministic codes are very fast while Monte Carlo codes are more elaborate. Therefore it is important to investigate how well the results of deterministic codes compare with those of Monte Carlo transport codes and where they differ. In this study we evaluate these different codes in their space radiation applications by comparing their output results in the same given space radiation environments, shielding geometry and material. Typical space radiation environments such as the 1977 solar minimum galactic cosmic ray environment are used as the well-defined input, and simple geometries made of aluminum, water and/or polyethylene are used to represent the shielding material. We then compare various outputs of these codes, such as the dose-depth curves and the flux spectra of different fragments and other secondary particles. These comparisons enable us to learn more about the main differences between these space radiation transport codes. At the same time, they help us to learn the qualitative and quantitative features that these transport codes have in common.

  19. Implementation of an anomalous radial transport model for continuum kinetic edge codes

    NASA Astrophysics Data System (ADS)

    Bodi, K.; Krasheninnikov, S. I.; Cohen, R. H.; Rognlien, T. D.

    2007-11-01

    Radial plasma transport in magnetic fusion devices is often dominated by plasma turbulence compared to neoclassical collisional transport. Continuum kinetic edge codes [such as the (2d,2v) transport version of TEMPEST and also EGK] compute the collisional transport directly, but there is a need to model the anomalous transport from turbulence for long-time transport simulations. Such a model is presented and results are shown for its implementation in the TEMPEST gyrokinetic edge code. The model includes velocity-dependent convection and diffusion coefficients expressed as a Hermite polynominals in velocity. The specification of the Hermite coefficients can be set, e.g., by specifying the ratio of particle and energy transport as in fluid transport codes. The anomalous transport terms preserve the property of no particle flux into unphysical regions of velocity space. TEMPEST simulations are presented showing the separate control of particle and energy anomalous transport, and comparisons are made with neoclassical transport also included.

  20. Parallel Monte Carlo Electron and Photon Transport Simulation Code (PMCEPT code)

    NASA Astrophysics Data System (ADS)

    Kum, Oyeon

    2004-11-01

    Simulations for customized cancer radiation treatment planning for each patient are very useful for both patient and doctor. These simulations can be used to find the most effective treatment with the least possible dose to the patient. This typical system, so called ``Doctor by Information Technology", will be useful to provide high quality medical services everywhere. However, the large amount of computing time required by the well-known general purpose Monte Carlo(MC) codes has prevented their use for routine dose distribution calculations for a customized radiation treatment planning. The optimal solution to provide ``accurate" dose distribution within an ``acceptable" time limit is to develop a parallel simulation algorithm on a beowulf PC cluster because it is the most accurate, efficient, and economic. I developed parallel MC electron and photon transport simulation code based on the standard MPI message passing interface. This algorithm solved the main difficulty of the parallel MC simulation (overlapped random number series in the different processors) using multiple random number seeds. The parallel results agreed well with the serial ones. The parallel efficiency approached 100% as was expected.

  1. Quasi steady-states, spin statistics, and interaction-induced transport of ultra-cold atoms in 1D optical lattices

    NASA Astrophysics Data System (ADS)

    Chien, Chih-Chun; Zwolak, Michael; di Ventra, Massimiliano

    2012-02-01

    We consider several non-equilibrium scenarios where ultra-cold atoms are initially loaded into the ground state of a 1D optical lattice. The system is then set out of equilibrium either by inducing a density imbalance or by imposing time-dependent inhomogeneous interactions. To monitor the dynamics, we have implemented the micro-canonical approach to transport [1] which has been previously used to study electron dynamics in nanoscale systems. We have found that by removing particles on the right half of the lattice, fermions form a quasi steady-state current, which can be observed as a plateau in the current as a function of time. In contrast, the bosonic current oscillates and decays to zero in the thermodynamic limit [2]. The difference appears in uniform lattices as well as lattices with a harmonic trap. Further, when light-induced interactions are applied to half of the lattice, we have found, using a Hartree-Fock approximation, a conducting-nonconducting transition in the fermionic case as the interaction increases. Our studies are relevant to recent experiments on transport of ultra-cold atoms and address fundamental issues in nanoscale electronic transport. [4pt] [1] Di Ventra and Todorov,J. Phys. Cond. Matt. 16, 8025 (2004).[0pt] [2] Chien, Zwolak, Di Ventra, arXiv: 1110.1646.

  2. Multigroup Neutron/Gamma-Ray Direct Integration Transport Code System for Two-Dimensional Cylindrical Geometry.

    1980-10-15

    Version 00 PALLAS-2DCY-FX is a code for direct integration of the transport equation in two-dimensional (r,z) geometry. It solves the energy and angular-dependent Boltzmann transport equation with general anisotropic scattering in cylindrical geometry. Its principal applications are to neutron or gamma-ray transport problems in the forward mode. The code is particularly designed for and suited to the solution of deep penetration radiation transport problems with an external (fixed) source.

  3. Preparing diagnostic data for the snap transport code

    NASA Astrophysics Data System (ADS)

    Murphy, J. A.; Scott, S. D.; Towner, H. H.

    1992-10-01

    This paper describes the program snapin which is used to prepare data for transport analysis with the snap code. The data input to snap includes diagnostic profiles [ne(R), Te(R), Ti(R), vφ(R), Zeff(R), Prad(R)] and measurements such as total plasma current, Rmajor, beam power, gas puff rate, etc. snapin reads in the necessary TFTR data, allows editing of that data, including graphical editing of profile data and the selection of physics models. snapin allows comparison of profile data from all diagnostics that measure a quantity, for example, electron temperature profiles from Thomson scattering and electron cyclotron emission (ECE). A powerful user interface is important to help the user prepare input data sets quickly and consistently, because hundreds of variables must be specified for each analysis. snapin facilitates this by a careful organization of menus, display of all scalar data and switch settings within the menus, the graphical editing and comparison of profiles, and step-by-step checking for consistent physics controls [J. Murphy, S. Scott, and H. Towner, The snap User's Guide, Technical Report PPPL-TM-393, Princeton Plasma Physics Laboratory (1992)].

  4. The effect of modafinil on the rat dopamine transporter and dopamine receptors D1-D3 paralleling cognitive enhancement in the radial arm maze.

    PubMed

    Karabacak, Yasemin; Sase, Sunetra; Aher, Yogesh D; Sase, Ajinkya; Saroja, Sivaprakasam R; Cicvaric, Ana; Höger, Harald; Berger, Michael; Bakulev, Vasiliy; Sitte, Harald H; Leban, Johann; Monje, Francisco J; Lubec, Gert

    2015-01-01

    A series of drugs have been reported to increase memory performance modulating the dopaminergic system and herein modafinil was tested for its working memory (WM) enhancing properties. Reuptake inhibition of dopamine, serotonin (SERT) and norepinephrine (NET) by modafinil was tested. Sixty male Sprague-Dawley rats were divided into six groups (modafinil-treated 1-5-10 mg/kg body weight, trained and untrained and vehicle treated trained and untrained rats; daily injected intraperitoneally for a period of 10 days) and tested in a radial arm maze (RAM), a paradigm for testing spatial WM. Hippocampi were taken 6 h following the last day of training and complexes containing the unphosphorylated or phosphorylated dopamine transporter (DAT-CC and pDAT-CC) and complexes containing the D1-3 dopamine receptor subunits (D1-D3-CC) were determined. Modafinil was binding to the DAT but insignificantly to SERT or NET and dopamine reuptake was blocked specifically (IC50 = 11.11 μM; SERT 1547 μM; NET 182 μM). From day 8 (day 9 for 1 mg/kg body weight) modafinil was decreasing WM errors (WMEs) in the RAM significantly and remarkably at all doses tested as compared to the vehicle controls. WMEs were linked to the D2R-CC and the pDAT-CC. pDAT and D1-D3-CC levels were modulated significantly and modafinil was shown to enhance spatial WM in the rat in a well-documented paradigm at all the three doses and dopamine reuptake inhibition with subsequent modulation of D1-3-CC is proposed as a possible mechanism of action. PMID:26347626

  5. Charged and neutral particle transport methods and applications: The CALOR code system

    SciTech Connect

    Gabriel, T.A.; Charlton, L.A.

    1997-04-01

    The CALOR code system, which is a complete radiation transport code system, is described with emphasis on the high-energy (> 20 MeV) nuclear collision models. Codes similar to CALOR are also briefly discussed. A current application using CALOR which deals with the development of the National Spallation Neutron Source is also given.

  6. Neutral Particle Transport in Cylindrical Plasma Simulated by a Monte Carlo Code

    NASA Astrophysics Data System (ADS)

    Yu, Deliang; Yan, Longwen; Zhong, Guangwu; Lu, Jie; Yi, Ping

    2007-04-01

    A Monte Carlo code (MCHGAS) has been developed to investigate the neutral particle transport. The code can calculate the radial profile and energy spectrum of neutral particles in cylindrical plasmas. The calculation time of the code is dramatically reduced when the Splitting and Roulette schemes are applied. The plasma model of an infinite cylinder is assumed in the code, which is very convenient in simulating neutral particle transports in small and middle-sized tokamaks. The design of the multi-channel neutral particle analyser (NPA) on HL-2A can be optimized by using this code.

  7. Simulation of transport in the ignited ITER with 1.5-D predictive code

    NASA Astrophysics Data System (ADS)

    Becker, G.

    1995-01-01

    The confinement in the bulk and scrape-off layer plasmas of the ITER EDA and CDA is investigated with special versions of the 1.5-D BALDUR predictive transport code for the case of peaked density profiles (Cu=1.0). The code self-consistently computes 2-D equilibria and solves 1-D transport equations with empirical transport coefficients for the ohmic, L and ELMy H mode regimes. Self-sustained steady state thermonuclear burn is demonstrated for up to 500 s. It is shown to be compatible with the strong radiation losses for divertor heat load reduction caused by the seeded impurities iron, neon and argon. The corresponding global and local energy and particle transport are presented. The required radiation corrected energy confinement times of the EDA and CDA are found to be close to 4 s, which is attainable according to the ITER ELMy H mode scalings. In the reference cases, the steady state helium fraction is 7%, which already causes significant dilution of the DT fuel. The fractions of iron, neon and argon needed for the prescribed radiative power loss are given. It is shown that high radiative losses from the confinement zone, mainly by bremsstrahlung, cannot be avoided. The radiation profiles of iron and argon are found to be the same, with two thirds of the total radiation being emitted from closed flux surfaces. Fuel dilution due to iron and argon is small. The neon radiation is more peripheral, since only half of the total radiative power is lost within the separatrix. But neon is found to cause high fuel. Dilution. The combined dilution effect by helium and neon conflicts with burn control, self-sustained burn and divertor power reduction. Raising the helium fraction above 10% leads to the same difficulties owing to fuel dilution. The high helium levels of the present EDA design are thus unacceptable. For the reference EDA case, the self-consistent electron density and temperature at the separatrix are 5.6*1019 m-3 and 130 eV, respectively. The bootstrap

  8. Verification and Validation of MERCURY: A Modern, Monte Carlo Particle Transport Code

    SciTech Connect

    Procassini, R J; Cullen, D E; Greenman, G M; Hagmann, C A

    2004-12-09

    Verification and Validation (V&V) is a critical phase in the development cycle of any scientific code. The aim of the V&V process is to determine whether or not the code fulfills and complies with the requirements that were defined prior to the start of the development process. While code V&V can take many forms, this paper concentrates on validation of the results obtained from a modern code against those produced by a validated, legacy code. In particular, the neutron transport capabilities of the modern Monte Carlo code MERCURY are validated against those in the legacy Monte Carlo code TART. The results from each code are compared for a series of basic transport and criticality calculations which are designed to check a variety of code modules. These include the definition of the problem geometry, particle tracking, collisional kinematics, sampling of secondary particle distributions, and nuclear data. The metrics that form the basis for comparison of the codes include both integral quantities and particle spectra. The use of integral results, such as eigenvalues obtained from criticality calculations, is shown to be necessary, but not sufficient, for a comprehensive validation of the code. This process has uncovered problems in both the transport code and the nuclear data processing codes which have since been rectified.

  9. A novel heterocyclic compound targeting the dopamine transporter improves performance in the radial arm maze and modulates dopamine receptors D1-D3.

    PubMed

    Saroja, Sivaprakasam R; Aher, Yogesh D; Kalaba, Predrag; Aher, Nilima Y; Zehl, Martin; Korz, Volker; Subramaniyan, Saraswathi; Miklosi, Andras G; Zanon, Lisa; Neuhaus, Winfried; Höger, Harald; Langer, Thierry; Urban, Ernst; Leban, Johann; Lubec, Gert

    2016-10-01

    A series of compounds targeting the dopamine transporter (DAT) haS been shown to improve memory performance most probably by re-uptake inhibition. Although specific DAT inhibitors are available, there is limited information about specificity, mechanism and in particular the effect on dopamine receptors. It was therefore the aim of the study to test the DAT inhibitor 4-(diphenyl-methanesulfinylmethyl)-2-methyl-thiazole (code: CE-111), synthetized in our laboratory for the specificity to target DAT, for the effects upon spatial memory and for induced dopamine receptor modulation. Re-uptake inhibition was tested for DAT (IC50=3.2μM), serotonin transporter, SERT (IC50=272291μM) and noradrenaline transporter, NET (IC50=174μM). Spatial memory was studied in the radial arm maze (RAM) in male Sprague-Dawley rats that were intraperitoneally injected with CE-111 (1 or 10mg/kg body weight). Performance in the RAM was improved using 1 and 10mg/kg body weight of CE-111. Training and treatment effects on presynaptic, postsynaptic and extrasynaptic D1 and D2- receptors and dopamine receptor containing complexes as well as on activated DAT were observed. CE-111 was crossing the blood-brain barrier comparable to modafinil and was identified as effective to improve memory performance in the RAM. Dopamine re-uptake inhibition along with modulations in dopamine receptors are proposed as potential underlying mechanisms. PMID:27288589

  10. Modeling water flow and bacterial transport in undisturbed lysimeters under irrigations of dairy shed effluent and water using HYDRUS-1D.

    PubMed

    Jiang, Shuang; Pang, Liping; Buchan, Graeme D; Simůnek, Jirí; Noonan, Mike J; Close, Murray E

    2010-02-01

    HYDRUS-1D was used to simulate water flow and leaching of fecal coliforms and bromide (Br) through six undisturbed soil lysimeters (70 cm depth by 50 cm diameter) under field conditions. Dairy shed effluent (DSE) spiked with Br was applied to the lysimeters, which contained fine sandy loam layers. This application was followed by fortnightly spray or flood water irrigation. Soil water contents were measured at four soil depths over 171 days, and leachate was collected from the bottom. The post-DSE period simulations yielded a generally decreased saturated water content compared to the pre-DSE period, and an increased saturated hydraulic conductivity and air-entry index, suggesting that changes in soil hydraulic properties (e.g. via changes in structure) can be induced by irrigation and seasonal effects. The single-porosity flow model was successful in simulating water flow under natural climatic conditions and spray irrigation. However, for lysimeters under flood irrigation, when the effect of preferential flow paths becomes more significant, the good agreement between predicted and observed water contents could only be achieved by using a dual-porosity flow model. Results derived from a mobile-immobile transport model suggest that compared to Br, bacteria were transported through a narrower pore-network with less mass exchange between mobile and immobile water zones. Our study suggests that soils with higher topsoil clay content and soils under flood irrigation are at a high risk of bacteria leaching through preferential flow paths. Irrigation management strategies must minimize the effect of preferential flow to reduce bacterial leaching from land applications of effluent.

  11. Modeling water flow and bacterial transport in undisturbed lysimeters under irrigations of dairy shed effluent and water using HYDRUS-1D.

    PubMed

    Jiang, Shuang; Pang, Liping; Buchan, Graeme D; Simůnek, Jirí; Noonan, Mike J; Close, Murray E

    2010-02-01

    HYDRUS-1D was used to simulate water flow and leaching of fecal coliforms and bromide (Br) through six undisturbed soil lysimeters (70 cm depth by 50 cm diameter) under field conditions. Dairy shed effluent (DSE) spiked with Br was applied to the lysimeters, which contained fine sandy loam layers. This application was followed by fortnightly spray or flood water irrigation. Soil water contents were measured at four soil depths over 171 days, and leachate was collected from the bottom. The post-DSE period simulations yielded a generally decreased saturated water content compared to the pre-DSE period, and an increased saturated hydraulic conductivity and air-entry index, suggesting that changes in soil hydraulic properties (e.g. via changes in structure) can be induced by irrigation and seasonal effects. The single-porosity flow model was successful in simulating water flow under natural climatic conditions and spray irrigation. However, for lysimeters under flood irrigation, when the effect of preferential flow paths becomes more significant, the good agreement between predicted and observed water contents could only be achieved by using a dual-porosity flow model. Results derived from a mobile-immobile transport model suggest that compared to Br, bacteria were transported through a narrower pore-network with less mass exchange between mobile and immobile water zones. Our study suggests that soils with higher topsoil clay content and soils under flood irrigation are at a high risk of bacteria leaching through preferential flow paths. Irrigation management strategies must minimize the effect of preferential flow to reduce bacterial leaching from land applications of effluent. PMID:19775719

  12. Aerosol sampling and Transport Efficiency Calculation (ASTEC) and application to surtsey/DCH aerosol sampling system: Code version 1. 0: Code description and user's manual

    SciTech Connect

    Yamano, N.; Brockmann, J.E.

    1989-05-01

    This report describes the features and use of the Aerosol Sampling and Transport Efficiency Calculation (ASTEC) Code. The ASTEC code has been developed to assess aerosol transport efficiency source term experiments at Sandia National Laboratories. This code also has broad application for aerosol sampling and transport efficiency calculations in general as well as for aerosol transport considerations in nuclear reactor safety issues. 32 refs., 31 figs., 7 tabs.

  13. Regional Atmospheric Transport Code for Hanford Emission Tracking, Version 2(RATCHET2)

    SciTech Connect

    Ramsdell, James V.; Rishel, Jeremy P.

    2006-07-01

    This manual describes the atmospheric model and computer code for the Atmospheric Transport Module within SAC. The Atmospheric Transport Module, called RATCHET2, calculates the time-integrated air concentration and surface deposition of airborne contaminants to the soil. The RATCHET2 code is an adaptation of the Regional Atmospheric Transport Code for Hanford Emissions Tracking (RATCHET). The original RATCHET code was developed to perform the atmospheric transport for the Hanford Environmental Dose Reconstruction Project. Fundamentally, the two sets of codes are identical; no capabilities have been deleted from the original version of RATCHET. Most modifications are generally limited to revision of the run-specification file to streamline the simulation process for SAC.

  14. Parameterized isoprene and monoterpene emissions from the boreal forest floor: Implementation into a 1D chemistry-transport model and investigation of the influence on atmospheric chemistry

    NASA Astrophysics Data System (ADS)

    Mogensen, Ditte; Aaltonen, Hermanni; Aalto, Juho; Bäck, Jaana; Kieloaho, Antti-Jussi; Gierens, Rosa; Smolander, Sampo; Kulmala, Markku; Boy, Michael

    2015-04-01

    Volatile organic compounds (VOCs) are emitted from the biosphere and can work as precursor gases for aerosol particles that can affect the climate (e.g. Makkonen et al., ACP, 2012). VOC emissions from needles and leaves have gained the most attention, however other parts of the ecosystem also have the ability to emit a vast amount of VOCs. This, often neglected, source can be important e.g. at periods where leaves are absent. Both sources and drivers related to forest floor emission of VOCs are currently limited. It is thought that the sources are mainly due to degradation of organic matter (Isidorov and Jdanova, Chemosphere, 2002), living roots (Asensio et al., Soil Biol. Biochem., 2008) and ground vegetation. The drivers are biotic (e.g. microbes) and abiotic (e.g. temperature and moisture). However, the relative importance of the sources and the drivers individually are currently poorly understood. Further, the relative importance of these factors is highly dependent on the tree species occupying the area of interest. The emission of isoprene and monoterpenes where measured from the boreal forest floor at the SMEAR II station in Southern Finland (Hari and Kulmala, Boreal Env. Res., 2005) during the snow-free period in 2010-2012. We used a dynamic method with 3 automated chambers analyzed by Proton Transfer Reaction - Mass Spectrometer (Aaltonen et al., Plant Soil, 2013). Using this data, we have developed empirical parameterizations for the emission of isoprene and monoterpenes from the forest floor. These parameterizations depends on abiotic factors, however, since the parameterizations are based on field measurements, biotic features are captured. Further, we have used the 1D chemistry-transport model SOSAA (Boy et al., ACP, 2011) to test the seasonal relative importance of inclusion of these parameterizations of the forest floor compared to the canopy crown emissions, on the atmospheric reactivity throughout the canopy.

  15. Accelerating execution of the integrated TIGER series Monte Carlo radiation transport codes

    SciTech Connect

    Smith, L.M.; Hochstedler, R.D.

    1997-02-01

    Execution of the integrated TIGER series (ITS) of coupled electron/photon Monte Carlo radiation transport codes has been accelerated by modifying the FORTRAN source code for more efficient computation. Each member code of ITS was benchmarked and profiled with a specific test case that directed the acceleration effort toward the most computationally intensive subroutines. Techniques for accelerating these subroutines included replacing linear search algorithms with binary versions, replacing the pseudo-random number generator, reducing program memory allocation, and proofing the input files for geometrical redundancies. All techniques produced identical or statistically similar results to the original code. Final benchmark timing of the accelerated code resulted in speed-up factors of 2.00 for TIGER (the one-dimensional slab geometry code), 1.74 for CYLTRAN (the two-dimensional cylindrical geometry code), and 1.90 for ACCEPT (the arbitrary three-dimensional geometry code).

  16. Code System to Calculate Waste-Isolation Flow and Transport.

    1999-10-18

    Version 00 SWIFT solves the coupled or individual equations governing fluid flow, heat transport, brine displacement, and radionuclide displacement in geologic media. Fluid flow may be transient or steady state. One, two, or three dimensions are available, and transport of radionuclides chains is possible.

  17. Sandia National Laboratories environmental fluid dynamics code : sediment transport user manual.

    SciTech Connect

    Grace, Matthew D.; Thanh, Phi Hung X.; James, Scott Carlton

    2008-09-01

    This document describes the sediment transport subroutines and input files for the Sandia National Laboratories Environmental Fluid Dynamics Code (SNL-EFDC). Detailed descriptions of the input files containing data from Sediment Erosion at Depth flume (SEDflume) measurements are provided along with the description of the source code implementing sediment transport. Both the theoretical description of sediment transport employed in SNL-EFDC and the source code are described. This user manual is meant to be used in conjunction with the EFDC manual (Hamrick 1996) because there will be no reference to the hydrodynamics in EFDC. Through this document, the authors aim to provide the necessary information for new users who wish to implement sediment transport in EFDC and obtain a clear understanding of the source code.

  18. A Code System for Assessing the Impact from Transporting Radioactive Material.

    1986-07-23

    Version 00 INTERTRAN-I calculates the radiological impact from incident-free transports and vehicular accidents involving radioactive materials. The code also handles accidents which may occur during handling operations.

  19. Assessing 1D Atmospheric Solar Radiative Transfer Models: Interpretation and Handling of Unresolved Clouds.

    NASA Astrophysics Data System (ADS)

    Barker, H. W.; Stephens, G. L.; Partain, P. T.; Bergman, J. W.; Bonnel, B.; Campana, K.; Clothiaux, E. E.; Clough, S.; Cusack, S.; Delamere, J.; Edwards, J.; Evans, K. F.; Fouquart, Y.; Freidenreich, S.; Galin, V.; Hou, Y.; Kato, S.; Li, J.;  Mlawer, E.;  Morcrette, J.-J.;  O'Hirok, W.;  Räisänen, P.;  Ramaswamy, V.;  Ritter, B.;  Rozanov, E.;  Schlesinger, M.;  Shibata, K.;  Sporyshev, P.;  Sun, Z.;  Wendisch, M.;  Wood, N.;  Yang, F.

    2003-08-01

    The primary purpose of this study is to assess the performance of 1D solar radiative transfer codes that are used currently both for research and in weather and climate models. Emphasis is on interpretation and handling of unresolved clouds. Answers are sought to the following questions: (i) How well do 1D solar codes interpret and handle columns of information pertaining to partly cloudy atmospheres? (ii) Regardless of the adequacy of their assumptions about unresolved clouds, do 1D solar codes perform as intended?One clear-sky and two plane-parallel, homogeneous (PPH) overcast cloud cases serve to elucidate 1D model differences due to varying treatments of gaseous transmittances, cloud optical properties, and basic radiative transfer. The remaining four cases involve 3D distributions of cloud water and water vapor as simulated by cloud-resolving models. Results for 25 1D codes, which included two line-by-line (LBL) models (clear and overcast only) and four 3D Monte Carlo (MC) photon transport algorithms, were submitted by 22 groups. Benchmark, domain-averaged irradiance profiles were computed by the MC codes. For the clear and overcast cases, all MC estimates of top-of-atmosphere albedo, atmospheric absorptance, and surface absorptance agree with one of the LBL codes to within ±2%. Most 1D codes underestimate atmospheric absorptance by typically 15-25 W m-2 at overhead sun for the standard tropical atmosphere regardless of clouds.Depending on assumptions about unresolved clouds, the 1D codes were partitioned into four genres: (i) horizontal variability, (ii) exact overlap of PPH clouds, (iii) maximum/random overlap of PPH clouds, and (iv) random overlap of PPH clouds. A single MC code was used to establish conditional benchmarks applicable to each genre, and all MC codes were used to establish the full 3D benchmarks. There is a tendency for 1D codes to cluster near their respective conditional benchmarks, though intragenre variances typically exceed those for

  20. Towards a 3D Space Radiation Transport Code

    NASA Technical Reports Server (NTRS)

    Wilson, J. W.; Tripathl, R. K.; Cicomptta, F. A.; Heinbockel, J. H.; Tweed, J.

    2002-01-01

    High-speed computational procedures for space radiation shielding have relied on asymptotic expansions in terms of the off-axis scatter and replacement of the general geometry problem by a collection of flat plates. This type of solution was derived for application to human rated systems in which the radius of the shielded volume is large compared to the off-axis diffusion limiting leakage at lateral boundaries. Over the decades these computational codes are relatively complete and lateral diffusion effects are now being added. The analysis for developing a practical full 3D space shielding code is presented.

  1. HZETRN: A heavy ion/nucleon transport code for space radiations

    NASA Technical Reports Server (NTRS)

    Wilson, John W.; Chun, Sang Y.; Badavi, Forooz F.; Townsend, Lawrence W.; Lamkin, Stanley L.

    1991-01-01

    The galactic heavy ion transport code (GCRTRN) and the nucleon transport code (BRYNTRN) are integrated into a code package (HZETRN). The code package is computer efficient and capable of operating in an engineering design environment for manned deep space mission studies. The nuclear data set used by the code is discussed including current limitations. Although the heavy ion nuclear cross sections are assumed constant, the nucleon-nuclear cross sections of BRYNTRN with full energy dependence are used. The relation of the final code to the Boltzmann equation is discussed in the context of simplifying assumptions. Error generation and propagation is discussed, and comparison is made with simplified analytic solutions to test numerical accuracy of the final results. A brief discussion of biological issues and their impact on fundamental developments in shielding technology is given.

  2. Verification of Three Dimensional Triangular Prismatic Discrete Ordinates Transport Code ENSEMBLE-TRIZ by Comparison with Monte Carlo Code GMVP

    NASA Astrophysics Data System (ADS)

    Homma, Yuto; Moriwaki, Hiroyuki; Ohki, Shigeo; Ikeda, Kazumi

    2014-06-01

    This paper deals with verification of three dimensional triangular prismatic discrete ordinates transport calculation code ENSEMBLE-TRIZ by comparison with multi-group Monte Carlo calculation code GMVP in a large fast breeder reactor. The reactor is a 750 MWe electric power sodium cooled reactor. Nuclear characteristics are calculated at beginning of cycle of an initial core and at beginning and end of cycle of equilibrium core. According to the calculations, the differences between the two methodologies are smaller than 0.0002 Δk in the multi-plication factor, relatively about 1% in the control rod reactivity, and 1% in the sodium void reactivity.

  3. A Monte Carlo Code for Relativistic Radiation Transport Around Kerr Black Holes

    NASA Technical Reports Server (NTRS)

    Schnittman, Jeremy David; Krolik, Julian H.

    2013-01-01

    We present a new code for radiation transport around Kerr black holes, including arbitrary emission and absorption mechanisms, as well as electron scattering and polarization. The code is particularly useful for analyzing accretion flows made up of optically thick disks and optically thin coronae. We give a detailed description of the methods employed in the code and also present results from a number of numerical tests to assess its accuracy and convergence.

  4. WHISTBT: a 1-1/2-D radial-transport code for bumpy tori

    SciTech Connect

    Hastings, D.E.; Houlberg, W.A.; Attenberger, S.E.; Lee, D.K.

    1983-10-01

    The computer code WHISTBT has been developed from the Oak Ridge National Laboratory WHIST code to study radial transport in bumpy tori. The code can handle both positive and negative ad hoc electric fields for devices ranging from the size of ELMO Bumpy Torus-Scale (EBT-S) to a reactor-type device, EBT-R. Fueling can be by gas puffing or pellets; heating can be by injection of rf power or neutral beams.

  5. Triheptanoin for glucose transporter type I deficiency (G1D): Modulation of human ictogenesis, cerebral metabolic rate and cognitive indices by a food supplement

    PubMed Central

    Pascual, Juan M.; Liu, Peiying; Mao, Deng; Kelly, Dorothy; Hernandez, Ana; Sheng, Min; Good, Levi B.; Ma, Qian; Marin-Valencia, Isaac; Zhang, Xuchen; Park, Jason Y.; Hynan, Linda S.; Stavinoha, Peter; Roe, Charles R.; Lu, Hanzhang

    2015-01-01

    Objective G1D is commonly associated with electrographic spike-wave and - less-noticeably – with absence seizures. The G1D syndrome has long been attributed to energy (i.e., ATP-synthetic) failure, as have experimental, toxic-rodent epilepsies to impaired brain metabolism and tricarboxylic acid (TCA) cycle intermediate depletion. Indeed, a (seldom-acknowledged) function of glucose and other substrates is the generation of brain TCAs via carbon-donor reactions collectively named anaplerosis. However, TCAs are preserved in murine G1D. This renders inferences about energy failure premature and suggests a different hypothesis, also grounded on our findings, that consumption of alternate TCA precursors is stimulated, potentially detracting from other functions. Second, common ketogenic diets can ameliorate G1D seizures, but lead to a therapeutically-counterintuitive reduction in blood glucose available to the brain, and they can prove ineffective in 1/3 of cases. While developing G1D treatments, all of this motivated us to: a) uphold (rather than attenuate) the residual brain glucose flux that all G1D patients possess; and b) stimulate the TCA cycle, including anaplerosis. Therefore, we tested the medium-chain triglyceride triheptanoin, a widely-used medical food supplement that can fulfill both of these metabolic roles. The rationale is that ketone bodies derived from ketogenic diets are not anaplerotic, in contrast with triheptanoin metabolites, as we have shown in the G1D mouse brain. Design We supplemented the regular diet of a case series of G1D patients with food-grade triheptanoin. First we confirmed that, despite their frequent electroencephalographic (EEG) presence as spike-waves, most seizures are rarely visible, such that perceptions by patients or others are inadequate for treatment evaluation. Thus, we used EEG, quantitative neuropsychological, blood analytical, and MRI cerebral metabolic rate measurements as main outcomes. Setting Academic and

  6. Progress in proton transport code development: Microelectronic application

    NASA Technical Reports Server (NTRS)

    Ngo, Duc M.; Buck, Warren W.; Fogarty, Tom N.; Wilson, J. W.

    1989-01-01

    The process of target nucleus fragmentation by energetic protons is examined, and their effects on microelectronic devices are considered. A formalism for target fragment transport is presented. Future applications to microelectronic effects are discussed.

  7. Comparisons of anomalous and collisional radial transport with a continuum kinetic edge code

    NASA Astrophysics Data System (ADS)

    Bodi, K.; Krasheninnikov, S.; Cohen, R.; Rognlien, T.

    2009-05-01

    Modeling of anomalous (turbulence-driven) radial transport in controlled-fusion plasmas is necessary for long-time transport simulations. Here the focus is continuum kinetic edge codes such as the (2-D, 2-V) transport version of TEMPEST, NEO, and the code being developed by the Edge Simulation Laboratory, but the model also has wider application. Our previously developed anomalous diagonal transport matrix model with velocity-dependent convection and diffusion coefficients allows contact with typical fluid transport models (e.g., UEDGE). Results are presented that combine the anomalous transport model and collisional transport owing to ion drift orbits utilizing a Krook collision operator that conserves density and energy. Comparison is made of the relative magnitudes and possible synergistic effects of the two processes for typical tokamak device parameters.

  8. A predictive transport modeling code for ICRF-heated tokamaks

    SciTech Connect

    Phillips, C.K.; Hwang, D.Q.; Houlberg, W.; Attenberger, S.; Tolliver, J.; Hively, L.

    1992-02-01

    In this report, a detailed description of the physic included in the WHIST/RAZE package as well as a few illustrative examples of the capabilities of the package will be presented. An in depth analysis of ICRF heating experiments using WHIST/RAZE will be discussed in a forthcoming report. A general overview of philosophy behind the structure of the WHIST/RAZE package, a summary of the features of the WHIST code, and a description of the interface to the RAZE subroutines are presented in section 2 of this report. Details of the physics contained in the RAZE code are examined in section 3. Sample results from the package follow in section 4, with concluding remarks and a discussion of possible improvements to the package discussed in section 5.

  9. Environmental, Transient, Three-Dimensional, Hydrothermal, Mass Transport Code - FLESCOT

    SciTech Connect

    Onishi, Yasuo; Bao, Jie; Glass, Kevin A.; Eyler, L. L.; Okumura, Masahiko

    2015-03-28

    The purpose of the project was to modify and apply the transient, three-dimensional FLESCOT code to be able to effectively simulate cesium behavior in Fukushima lakes/dam reservoirs, river mouths, and coastal areas. The ultimate objective of the FLESCOT simulation is to predict future changes of cesium accumulation in Fukushima area reservoirs and costal water. These evaluation results will assist ongoing and future environmental remediation activities and policies in a systematic and comprehensive manner.

  10. Multigroup Three-Dimensional Direct Integration Method Radiation Transport Analysis Code System.

    1987-09-18

    Version 00 TRISTAN solves the three-dimensional, fixed-source, Boltzmann transport equation for neutrons or gamma rays in rectangular geometry. The code can solve an adjoint problem as well as a usual transport problem. TRISTAN is a suitable tool to analyze radiation shielding problems such as streaming and deep penetration problems.

  11. Full 3D visualization tool-kit for Monte Carlo and deterministic transport codes

    SciTech Connect

    Frambati, S.; Frignani, M.

    2012-07-01

    We propose a package of tools capable of translating the geometric inputs and outputs of many Monte Carlo and deterministic radiation transport codes into open source file formats. These tools are aimed at bridging the gap between trusted, widely-used radiation analysis codes and very powerful, more recent and commonly used visualization software, thus supporting the design process and helping with shielding optimization. Three main lines of development were followed: mesh-based analysis of Monte Carlo codes, mesh-based analysis of deterministic codes and Monte Carlo surface meshing. The developed kit is considered a powerful and cost-effective tool in the computer-aided design for radiation transport code users of the nuclear world, and in particular in the fields of core design and radiation analysis. (authors)

  12. Low-discrepancy point sets in transport codes

    SciTech Connect

    Warnock, T.T.

    1985-01-01

    A drawback to Monte Carlo methods of computation is its rate of convergence. There are methods of sampling that have a better error estimate than those using random numbers. This paper gives the result of some preliminary experiments with these sampling methods on two neutron transport problems.

  13. The TOUGH codes - a family of simulation tools for multiphase flowand transport processes in permeable media

    SciTech Connect

    Pruess, Karsten

    2003-08-08

    Numerical simulation has become a widely practiced andaccepted technique for studying flow and transport processes in thevadose zone and other subsurface flow systems. This article discusses asuite of codes, developed primarily at Lawrence Berkeley NationalLaboratory (LBNL), with the capability to model multiphase flows withphase change. We summarize history and goals in the development of theTOUGH codes, and present the governing equations for multiphase,multicomponent flow. Special emphasis is given to space discretization bymeans of integral finite differences (IFD). Issues of code implementationand architecture are addressed, as well as code applications,maintenance, and future developments.

  14. Interfaces MATXS Cross-Section Libraries to Nuclear Transport Codes for Fusion Systems Analysis.

    1985-04-10

    Version: 00 TRANSX-CTR is a computer code that reads nuclear data from a library in MATXS format and produces transport tables with many discrete-ordinates (Sn) and diffusion codes. Tables can be produced for neutron, photon, or coupled transport. Options include adjoint tables, mixtures, self-shielding, group collapse, homogenization, thermal upscatter, prompt or steady-state fission, transport corrections, elastic removal corrections, and flexible response-function edits. The ability to prepare coupled tables and response edits for heating, damage, gasmore » production, and delayed activity makes TRANSX-CTR especially useful for fusion reactor studies.« less

  15. Reprint of : Connection between wave transport through disordered 1D waveguides and energy density inside the sample: A maximum-entropy approach

    NASA Astrophysics Data System (ADS)

    Mello, Pier A.; Shi, Zhou; Genack, Azriel Z.

    2016-08-01

    We study the average energy - or particle - density of waves inside disordered 1D multiply-scattering media. We extend the transfer-matrix technique that was used in the past for the calculation of the intensity beyond the sample to study the intensity in the interior of the sample by considering the transfer matrices of the two segments that form the entire waveguide. The statistical properties of the two disordered segments are found using a maximum-entropy ansatz subject to appropriate constraints. The theoretical expressions are shown to be in excellent agreement with 1D transfer-matrix simulations.

  16. Intact coding region of the serotonin transporter gene in obsessive-compulsive disorder

    SciTech Connect

    Altemus, M.; Murphy, D.L.; Greenberg, B.; Lesch, K.P.

    1996-07-26

    Epidemiologic studies indicate that obsessive-compulsive disorder is genetically transmitted in some families, although no genetic abnormalities have been identified in individuals with this disorder. The selective response of obsessive-compulsive disorder to treatment with agents which block serotonin reuptake suggests the gene coding for the serotonin transporter as a candidate gene. The primary structure of the serotonin-transporter coding region was sequenced in 22 patients with obsessive-compulsive disorder, using direct PCR sequencing of cDNA synthesized from platelet serotonin-transporter mRNA. No variations in amino acid sequence were found among the obsessive-compulsive disorder patients or healthy controls. These results do not support a role for alteration in the primary structure of the coding region of the serotonin-transporter gene in the pathogenesis of obsessive-compulsive disorder. 27 refs.

  17. Code System to Calculate Tornado-Induced Flow Material Transport.

    SciTech Connect

    ANDRAE, R. W.

    1999-11-18

    Version: 00 TORAC models tornado-induced flows, pressures, and material transport within structures. Its use is directed toward nuclear fuel cycle facilities and their primary release pathway, the ventilation system. However, it is applicable to other structures and can model other airflow pathways within a facility. In a nuclear facility, this network system could include process cells, canyons, laboratory offices, corridors, and offgas systems. TORAC predicts flow through a network system that also includes ventilation system components such as filters, dampers, ducts, and blowers. These ventilation system components are connected to the rooms and corridors of the facility to form a complete network for moving air through the structure and, perhaps, maintaining pressure levels in certain areas. The material transport capability in TORAC is very basic and includes convection, depletion, entrainment, and filtration of material.

  18. Code System to Calculate Particle Penetration Through Aerosol Transport Lines.

    1999-07-14

    Version 00 Distribution is restricted to US Government Agencies and Their Contractors Only. DEPOSITION1.03 is an interactive software program which was developed for the design and analysis of aerosol transport lines. Models are presented for calculating aerosol particle penetration through straight tubes of arbitrary orientation, inlets, and elbows. An expression to calculate effective depositional velocities of particles on tube walls is derived. The concept of maximum penetration is introduced, which is the maximum possible penetrationmore » through a sampling line connecting any two points in a three-dimensional space. A procedure to predict optimum tube diameter for an existing transport line is developed. Note that there is a discrepancy in this package which includes the DEPOSITION 1.03 executable and the DEPOSITION 2.0 report. RSICC was unable to obtain other executables or reports.« less

  19. Code System to Calculate Tornado-Induced Flow Material Transport.

    1999-11-18

    Version: 00 TORAC models tornado-induced flows, pressures, and material transport within structures. Its use is directed toward nuclear fuel cycle facilities and their primary release pathway, the ventilation system. However, it is applicable to other structures and can model other airflow pathways within a facility. In a nuclear facility, this network system could include process cells, canyons, laboratory offices, corridors, and offgas systems. TORAC predicts flow through a network system that also includes ventilation systemmore » components such as filters, dampers, ducts, and blowers. These ventilation system components are connected to the rooms and corridors of the facility to form a complete network for moving air through the structure and, perhaps, maintaining pressure levels in certain areas. The material transport capability in TORAC is very basic and includes convection, depletion, entrainment, and filtration of material.« less

  20. RISKIND: An enhanced computer code for National Environmental Policy Act transportation consequence analysis

    SciTech Connect

    Biwer, B.M.; LePoire, D.J.; Chen, S.Y.

    1996-03-01

    The RISKIND computer program was developed for the analysis of radiological consequences and health risks to individuals and the collective population from exposures associated with the transportation of spent nuclear fuel (SNF) or other radioactive materials. The code is intended to provide scenario-specific analyses when evaluating alternatives for environmental assessment activities, including those for major federal actions involving radioactive material transport as required by the National Environmental Policy Act (NEPA). As such, rigorous procedures have been implemented to enhance the code`s credibility and strenuous efforts have been made to enhance ease of use of the code. To increase the code`s reliability and credibility, a new version of RISKIND was produced under a quality assurance plan that covered code development and testing, and a peer review process was conducted. During development of the new version, the flexibility and ease of use of RISKIND were enhanced through several major changes: (1) a Windows{sup {trademark}} point-and-click interface replaced the old DOS menu system, (2) the remaining model input parameters were added to the interface, (3) databases were updated, (4) the program output was revised, and (5) on-line help has been added. RISKIND has been well received by users and has been established as a key component in radiological transportation risk assessments through its acceptance by the U.S. Department of Energy community in recent environmental impact statements (EISs) and its continued use in the current preparation of several EISs.

  1. Joint source coding, transport processing, and error concealment for H.323-based packet video

    NASA Astrophysics Data System (ADS)

    Zhu, Qin-Fan; Kerofsky, Louis

    1998-12-01

    In this paper, we investigate how to adapt different parameters in H.263 source coding, transport processing and error concealment to optimize end-to-end video quality at different bitrates and packet loss rates for H.323-based packet video. First different intra coding patterns are compared and we show that the contiguous rectangle or square block pattern offers the best performance in terms of video quality in the presence of packet loss. Second, the optimal intra coding frequency is found for different bitrates and packet loss rates. The optimal number of GOB headers to be inserted in the source coding is then determined. The effect of transport processing strategies such as packetization and retransmission is also examined. For packetization, the impact of packet size and the effect of macroblock segmentation to picture quality are investigated. Finally, we show that the dejitter buffering delay can be used to the advantage for packet loss recovery with video retransmission without incurring any extra delay.

  2. METHES: A Monte Carlo collision code for the simulation of electron transport in low temperature plasmas

    NASA Astrophysics Data System (ADS)

    Rabie, M.; Franck, C. M.

    2016-06-01

    We present a freely available MATLAB code for the simulation of electron transport in arbitrary gas mixtures in the presence of uniform electric fields. For steady-state electron transport, the program provides the transport coefficients, reaction rates and the electron energy distribution function. The program uses established Monte Carlo techniques and is compatible with the electron scattering cross section files from the open-access Plasma Data Exchange Project LXCat. The code is written in object-oriented design, allowing the tracing and visualization of the spatiotemporal evolution of electron swarms and the temporal development of the mean energy and the electron number due to attachment and/or ionization processes. We benchmark our code with well-known model gases as well as the real gases argon, N2, O2, CF4, SF6 and mixtures of N2 and O2.

  3. MC++: A parallel, portable, Monte Carlo neutron transport code in C++

    SciTech Connect

    Lee, S.R.; Cummings, J.C.; Nolen, S.D.

    1997-03-01

    MC++ is an implicit multi-group Monte Carlo neutron transport code written in C++ and based on the Parallel Object-Oriented Methods and Applications (POOMA) class library. MC++ runs in parallel on and is portable to a wide variety of platforms, including MPPs, SMPs, and clusters of UNIX workstations. MC++ is being developed to provide transport capabilities to the Accelerated Strategic Computing Initiative (ASCI). It is also intended to form the basis of the first transport physics framework (TPF), which is a C++ class library containing appropriate abstractions, objects, and methods for the particle transport problem. The transport problem is briefly described, as well as the current status and algorithms in MC++ for solving the transport equation. The alpha version of the POOMA class library is also discussed, along with the implementation of the transport solution algorithms using POOMA. Finally, a simple test problem is defined and performance and physics results from this problem are discussed on a variety of platforms.

  4. A General-Purpose Monte Carlo Gamma-Ray Transport Code System for Minicomputers.

    1981-08-27

    Version 00 The OGRE code system was designed to calculate, by Monte Carlo methods, any quantity related to gamma-ray transport. The system is represented by two codes which treat slab geometry. OGRE-P1 computes the dose on one side of a slab for a source on the other side, and HOTONE computes energy deposition in addition. The source may be monodirectional, isotropic, or cosine distributed.

  5. Systems guide to MCNP (Monte Carlo Neutron and Photon Transport Code)

    SciTech Connect

    Kirk, B.L.; West, J.T.

    1984-06-01

    The subject of this report is the implementation of the Los Alamos National Laboratory Monte Carlo Neutron and Photon Transport Code - Version 3 (MCNP) on the different types of computer systems, especially the IBM MVS system. The report supplements the documentation of the RSIC computer code package CCC-200/MCNP. Details of the procedure to follow in executing MCNP on the IBM computers, either in batch mode or interactive mode, are provided.

  6. Radiation transport phenomena and modeling. Part A: Codes; Part B: Applications with examples

    SciTech Connect

    Lorence, L.J. Jr.; Beutler, D.E.

    1997-09-01

    This report contains the notes from the second session of the 1997 IEEE Nuclear and Space Radiation Effects Conference Short Course on Applying Computer Simulation Tools to Radiation Effects Problems. Part A discusses the physical phenomena modeled in radiation transport codes and various types of algorithmic implementations. Part B gives examples of how these codes can be used to design experiments whose results can be easily analyzed and describes how to calculate quantities of interest for electronic devices.

  7. Mesh generation and energy group condensation studies for the jaguar deterministic transport code

    SciTech Connect

    Kennedy, R. A.; Watson, A. M.; Iwueke, C. I.; Edwards, E. J.

    2012-07-01

    The deterministic transport code Jaguar is introduced, and the modeling process for Jaguar is demonstrated using a two-dimensional assembly model of the Hoogenboom-Martin Performance Benchmark Problem. This single assembly model is being used to test and analyze optimal modeling methodologies and techniques for Jaguar. This paper focuses on spatial mesh generation and energy condensation techniques. In this summary, the models and processes are defined as well as thermal flux solution comparisons with the Monte Carlo code MC21. (authors)

  8. A Modular Computer Code for Simulating Reactive Multi-Species Transport in 3-Dimensional Groundwater Systems

    SciTech Connect

    TP Clement

    1999-06-24

    RT3DV1 (Reactive Transport in 3-Dimensions) is computer code that solves the coupled partial differential equations that describe reactive-flow and transport of multiple mobile and/or immobile species in three-dimensional saturated groundwater systems. RT3D is a generalized multi-species version of the US Environmental Protection Agency (EPA) transport code, MT3D (Zheng, 1990). The current version of RT3D uses the advection and dispersion solvers from the DOD-1.5 (1997) version of MT3D. As with MT3D, RT3D also requires the groundwater flow code MODFLOW for computing spatial and temporal variations in groundwater head distribution. The RT3D code was originally developed to support the contaminant transport modeling efforts at natural attenuation demonstration sites. As a research tool, RT3D has also been used to model several laboratory and pilot-scale active bioremediation experiments. The performance of RT3D has been validated by comparing the code results against various numerical and analytical solutions. The code is currently being used to model field-scale natural attenuation at multiple sites. The RT3D code is unique in that it includes an implicit reaction solver that makes the code sufficiently flexible for simulating various types of chemical and microbial reaction kinetics. RT3D V1.0 supports seven pre-programmed reaction modules that can be used to simulate different types of reactive contaminants including benzene-toluene-xylene mixtures (BTEX), and chlorinated solvents such as tetrachloroethene (PCE) and trichloroethene (TCE). In addition, RT3D has a user-defined reaction option that can be used to simulate any other types of user-specified reactive transport systems. This report describes the mathematical details of the RT3D computer code and its input/output data structure. It is assumed that the user is familiar with the basics of groundwater flow and contaminant transport mechanics. In addition, RT3D users are expected to have some experience in

  9. Development of the fluid-type transport code on the flux coordinates in a tokamak

    NASA Astrophysics Data System (ADS)

    Honda, Mitsuru; Fukuyama, Atsushi

    2016-11-01

    The one-dimensional fluid-type transport code, TASK/TX, is developed compatible with the flux coordinates in a tokamak. Unlike diffusive transport equations usually adopted in conventional transport codes, the governing equations conform to a two-fluid model consisting of Maxwell's equations and the multiple fluid moment equations for each species.Quasi-neutrality and ambipolar flux conditions are not imposed, which are inherently satisfied as a consequence of the equation system solved. The neoclassical particle flux is not approximated by the flux-gradient relationship, and the total particle flux composed of the neoclassical and turbulent contributions is directly treated as the dependent variable. The quantities related to neoclassical transport are intrinsically calculated without external neoclassical transport modules. In other words, TASK/TX by itself has the function of a neoclassical transport solver based on the moment approach as well. Several numerical tests clearly reveal the unique features of TASK/TX not possessed by conventional transport codes.

  10. ITS Version 6 : the integrated TIGER series of coupled electron/photon Monte Carlo transport codes.

    SciTech Connect

    Franke, Brian Claude; Kensek, Ronald Patrick; Laub, Thomas William

    2008-04-01

    ITS is a powerful and user-friendly software package permitting state-of-the-art Monte Carlo solution of lineartime-independent coupled electron/photon radiation transport problems, with or without the presence of macroscopic electric and magnetic fields of arbitrary spatial dependence. Our goal has been to simultaneously maximize operational simplicity and physical accuracy. Through a set of preprocessor directives, the user selects one of the many ITS codes. The ease with which the makefile system is applied combines with an input scheme based on order-independent descriptive keywords that makes maximum use of defaults and internal error checking to provide experimentalists and theorists alike with a method for the routine but rigorous solution of sophisticated radiation transport problems. Physical rigor is provided by employing accurate cross sections, sampling distributions, and physical models for describing the production and transport of the electron/photon cascade from 1.0 GeV down to 1.0 keV. The availability of source code permits the more sophisticated user to tailor the codes to specific applications and to extend the capabilities of the codes to more complex applications. Version 6, the latest version of ITS, contains (1) improvements to the ITS 5.0 codes, and (2) conversion to Fortran 90. The general user friendliness of the software has been enhanced through memory allocation to reduce the need for users to modify and recompile the code.

  11. FLAME: A finite element computer code for contaminant transport n variably-saturated media

    SciTech Connect

    Baca, R.G.; Magnuson, S.O.

    1992-06-01

    A numerical model was developed for use in performance assessment studies at the INEL. The numerical model referred to as the FLAME computer code, is designed to simulate subsurface contaminant transport in a variably-saturated media. The code can be applied to model two-dimensional contaminant transport in an and site vadose zone or in an unconfined aquifer. In addition, the code has the capability to describe transport processes in a porous media with discrete fractures. This report presents the following: description of the conceptual framework and mathematical theory, derivations of the finite element techniques and algorithms, computational examples that illustrate the capability of the code, and input instructions for the general use of the code. The development of the FLAME computer code is aimed at providing environmental scientists at the INEL with a predictive tool for the subsurface water pathway. This numerical model is expected to be widely used in performance assessments for: (1) the Remedial Investigation/Feasibility Study process and (2) compliance studies required by the US Department of energy Order 5820.2A.

  12. Some Examples of the Application and Validation of the NUFT Subsurface Flow and Transport Code

    SciTech Connect

    Nitao, J J

    2001-08-01

    This report was written as partial fulfillment of a subcontract from DOD/DOE Strategic Environmental Research and Development Program (SERDP) as part of a project directed by the U.S. Army Engineer Research and Development Center, Waterways Experiment Station (WES), Vicksburg, Mississippi. The report documents examples of field validation of the Non-isothermal Unsaturated-saturated Flow and Transport model (NUFT) code for environmental remediation, with emphasis on soil vapor extraction, and describes some of the modifications needed to integrate the code into the DOD Groundwater Modeling System (GMS, 2000). Note that this report highlights only a subset of the full capabilities of the NUFT code.

  13. A portable, parallel, object-oriented Monte Carlo neutron transport code in C++

    SciTech Connect

    Lee, S.R.; Cummings, J.C.; Nolen, S.D. |

    1997-05-01

    We have developed a multi-group Monte Carlo neutron transport code using C++ and the Parallel Object-Oriented Methods and Applications (POOMA) class library. This transport code, called MC++, currently computes k and {alpha}-eigenvalues and is portable to and runs parallel on a wide variety of platforms, including MPPs, clustered SMPs, and individual workstations. It contains appropriate classes and abstractions for particle transport and, through the use of POOMA, for portable parallelism. Current capabilities of MC++ are discussed, along with physics and performance results on a variety of hardware, including all Accelerated Strategic Computing Initiative (ASCI) hardware. Current parallel performance indicates the ability to compute {alpha}-eigenvalues in seconds to minutes rather than hours to days. Future plans and the implementation of a general transport physics framework are also discussed.

  14. Applications of the COG multiparticle Monte Carlo transport code to simulated imaging of complex objects

    SciTech Connect

    Buck, R M; Hall, J M

    1999-06-01

    COG is a major multiparticle simulation code in the LLNL Monte Carlo radiation transport toolkit. It was designed to solve deep-penetration radiation shielding problems in arbitrarily complex 3D geometries, involving coupled transport of photons, neutrons, and electrons. COG was written to provide as much accuracy as the underlying cross-sections will allow, and has a number of variance-reduction features to speed computations. Recently COG has been applied to the simulation of high- resolution radiographs of complex objects and the evaluation of contraband detection schemes. In this paper we will give a brief description of the capabilities of the COG transport code and show several examples of neutron and gamma-ray imaging simulations. Keywords: Monte Carlo, radiation transport, simulated radiography, nonintrusive inspection, neutron imaging.

  15. Fully coherent, wake and ASE-suppressed 15 μJ, 120 fs amplified high order harmonic pulse demonstrated with 1D time-dependant Bloch-Maxwell code

    NASA Astrophysics Data System (ADS)

    Oliva, E.; Zeitoun, Ph.; Fajardo, M.; Velarde, P.; Ros, D.; Sebban, S.

    2011-09-01

    Seeding plasma-based soft-x-ray lasers (PBSXR) with high order harmonics (HOH) is a promising way to obtain fully coherent, short (hundreds of femtoseconds), tens of microJoules pulses. Nevertheless, up to date only 1 μJ, 1 ps pulses have been demonstrated seeding plasmas created from gas targets and solid targets. As the amplification process couples plasma hydrodynamics, atomic processes and the propagation of electromagnetic fields, a careful optimization of seed and amplifier properties is essential to reach multi-microJoule, hundreds of fs regime. Recent papers showed that short and wide (up to 1 mm) plasmas present an optimal gain zone and up to 20 μJ could be extracted when seeding. Nevertheless, the temporal duration and profile of the output beam is still not optimal. Simulations show that the HOH is weakly amplified whereas most of the energy is within a long (several picoseconds) wake induced by the HOH. In addition to this, these simulation pointed out the presence of deleterious Amplified Spontaneous Emission (ASE). In order to obtain intense pulses useful for practical applications is crucial to reduce the duration to hundreds of fs and obtain ASE-suppressed, structure-free (ideally only an amplified HOH) pulses. Using the 1D Bloch-Maxwell code DeepOne we will show that fully coherent, wake and ASE-suppressed, 15 μJ, 120 fs pulse can be obtained when optimizing at the same time both the seed and the plasma conditions.

  16. Transport code for radiocolloid migration: with an assessment of an actual low-level waste site

    SciTech Connect

    Travis, B.J.; Nuttall, H.E.

    1984-12-31

    Recently, there is increased concern that radiocolloids may act as a rapid transport mechanism for the release of radionuclides from high-level waste repositories. The role of colloids is, however, controversial because the necessary data and assessment methodology have been limited. Evidence is accumulating to indicate that colloids are an important consideration in the geological disposal of nuclear waste. To quantitatively assess the role of colloids, the TRACR3D transport code has been enhanced by the addition of the population balance equations. This new version of the code can simulate the migration of colloids through combinations of porous/fractured, unsaturated, geologic media. The code was tested against the experimental laboratory column data of Avogadro et al. in order to compare the code results to both experimental data and an analytical solution. Next, a low-level radioactive waste site was investigated to explore whether colloid migration could account for the unusually rapid and long transport of plutonium and americium observed at a low-level waste site. Both plutonium and americium migrated 30 meters through unsaturated volcanic tuff. The nature and modeling of radiocolloids are discussed along with site simulation results from the TRACR3D code. 20 references.

  17. SQA of finite element method (FEM) codes used for analyses of pit storage/transport packages

    SciTech Connect

    Russel, E.

    1997-11-01

    This report contains viewgraphs on the software quality assurance of finite element method codes used for analyses of pit storage and transport projects. This methodology utilizes the ISO 9000-3: Guideline for application of 9001 to the development, supply, and maintenance of software, for establishing well-defined software engineering processes to consistently maintain high quality management approaches.

  18. Comparison of Transport Codes, HZETRN, HETC and FLUKA, Using 1977 GCR Solar Minimum Spectra

    NASA Technical Reports Server (NTRS)

    Heinbockel, John H.; Slaba, Tony C.; Tripathi, Ram K.; Blattnig, Steve R.; Norbury, John W.; Badavi, Francis F.; Townsend, Lawrence W.; Handler, Thomas; Gabriel, Tony A.; Pinsky, Lawrence S.; Reddell, Brandon; Aumann, Aric R.

    2009-01-01

    The HZETRN deterministic radiation transport code is one of several tools developed to analyze the effects of harmful galactic cosmic rays (GCR) and solar particle events (SPE) on mission planning, astronaut shielding and instrumentation. This paper is a comparison study involving the two Monte Carlo transport codes, HETC-HEDS and FLUKA, and the deterministic transport code, HZETRN. Each code is used to transport ions from the 1977 solar minimum GCR spectrum impinging upon a 20 g/cm2 Aluminum slab followed by a 30 g/cm2 water slab. This research is part of a systematic effort of verification and validation to quantify the accuracy of HZETRN and determine areas where it can be improved. Comparisons of dose and dose equivalent values at various depths in the water slab are presented in this report. This is followed by a comparison of the proton fluxes, and the forward, backward and total neutron fluxes at various depths in the water slab. Comparisons of the secondary light ion 2H, 3H, 3He and 4He fluxes are also examined.

  19. A transport based one-dimensional perturbation code for reactivity calculations in metal systems

    SciTech Connect

    Wenz, T.R.

    1995-02-01

    A one-dimensional reactivity calculation code is developed using first order perturbation theory. The reactivity equation is based on the multi-group transport equation using the discrete ordinates method for angular dependence. In addition to the first order perturbation approximations, the reactivity code uses only the isotropic scattering data, but cross section libraries with higher order scattering data can still be used with this code. The reactivity code obtains all the flux, cross section, and geometry data from the standard interface files created by ONEDANT, a discrete ordinates transport code. Comparisons between calculated and experimental reactivities were done with the central reactivity worth data for Lady Godiva, a bare uranium metal assembly. Good agreement is found for isotopes that do not violate the assumptions in the first order approximation. In general for cases where there are large discrepancies, the discretized cross section data is not accurately representing certain resonance regions that coincide with dominant flux groups in the Godiva assembly. Comparing reactivities calculated with first order perturbation theory and a straight {Delta}k/k calculation shows agreement within 10% indicating the perturbation of the calculated fluxes is small enough for first order perturbation theory to be applicable in the modeled system. Computation time comparisons between reactivities calculated with first order perturbation theory and straight {Delta}k/k calculations indicate considerable time can be saved performing a calculation with a perturbation code particularly as the complexity of the modeled problems increase.

  20. Towards a heavy-ion transport capability in the MARS15 Code

    SciTech Connect

    Mokhov, N. V.; Gudima, K. K.; Mashnik, S. G.; Rakhno, I. L.; Striganov, S.

    2004-04-01

    In order to meet the challenges of new accelerator and space projects and further improve modelling of radiation effects in microscopic objects, heavy-ion interaction and transport physics have been recently incorporated into the MARS15 Monte Carlo code. A brief description of new modules is given in comparison with experimental data. The MARS Monte Carlo code is widely used in numerous accelerator, detector, shielding and cosmic ray applications. The needs of the Relativistic Heavy-Ion Collider, Large Hadron Collider, Rare Isotope Accelerator and NASA projects have recently induced adding heavy-ion interaction and transport physics to the MARS15 code. The key modules of the new implementation are described below along with their comparisons to experimental data.

  1. Code System to Solve for Release and Transport of Contaminants through Saturated/Unsaturated Media.

    1996-03-07

    The BLT code solves for release and transport of contaminants from containerized wastes. Each container may have unique properties (i.e., time to failure or localized failure, e.g. pitting) and each waste form may have unique release properties. Release from the waste form is limited by one of four physical or chemical constraints: solubility, diffusion, dissolution, and surface wash-off with partitioning. The release from the waste form acts as a source for transport in the advection/dispersionmore » equation. Transport is modeled in two-dimensions through the groundwater pathway from subsurface disposal.« less

  2. Validation of the transportation computer codes HIGHWAY, INTERLINE, RADTRAN 4, and RISKIND

    SciTech Connect

    Maheras, S.J.; Pippen, H.K.

    1995-05-01

    The computer codes HIGHWAY, INTERLINE, RADTRAN 4, and RISKIND were used to estimate radiation doses from the transportation of radioactive material in the Department of Energy Programmatic Spent Nuclear Fuel Management and Idaho National Engineering Laboratory Environmental Restoration and Waste Management Programs Environmental Impact Statement. HIGHWAY and INTERLINE were used to estimate transportation routes for truck and rail shipments, respectively. RADTRAN 4 was used to estimate collective doses from incident-free transportation and the risk (probability {times} consequence) from transportation accidents. RISKIND was used to estimate incident-free radiation doses for maximally exposed individuals and the consequences from reasonably foreseeable transportation accidents. The purpose of this analysis is to validate the estimates made by these computer codes; critiques of the conceptual models used in RADTRAN 4 are also discussed. Validation is defined as ``the test and evaluation of the completed software to ensure compliance with software requirements.`` In this analysis, validation means that the differences between the estimates generated by these codes and independent observations are small (i.e., within the acceptance criterion established for the validation analysis). In some cases, the independent observations used in the validation were measurements; in other cases, the independent observations used in the validation analysis were generated using hand calculations. The results of the validation analyses performed for HIGHWAY, INTERLINE, RADTRAN 4, and RISKIND show that the differences between the estimates generated using the computer codes and independent observations were small. Based on the acceptance criterion established for the validation analyses, the codes yielded acceptable results; in all cases the estimates met the requirements for successful validation.

  3. Scrape-off layer modeling using coupled plasma and neutral transport codes

    SciTech Connect

    Stotler, D.P.; Coster, D.P.; Ehrdardt, A.B.; Karney, C.F.F.; Petravic, M.; Braams, B.J.

    1992-05-01

    An effort is made to refine the neutral transport model used in the B2 edge plasma code by coupling it to the DEGAS Monte Carlo code. Results are discussed for a simulation of a high recycling divertor. It appears that on the order of 100 iterations between the two codes are required to achieve a converged solution. However, the amount of computer time used in the DEGAS simulations is large, making complete runs impractical for design purposes. On the other hand, the differences in the resulting plasma parameters when compared to the B2 analytic neutrals model indicate that it would be worthwhile to explore techniques for speeding up the control system of codes.

  4. On the Development of a Deterministic Three-Dimensional Radiation Transport Code

    NASA Technical Reports Server (NTRS)

    Rockell, Candice; Tweed, John

    2011-01-01

    Since astronauts on future deep space missions will be exposed to dangerous radiations, there is a need to accurately model the transport of radiation through shielding materials and to estimate the received radiation dose. In response to this need a three dimensional deterministic code for space radiation transport is now under development. The new code GRNTRN is based on a Green's function solution of the Boltzmann transport equation that is constructed in the form of a Neumann series. Analytical approximations will be obtained for the first three terms of the Neumann series and the remainder will be estimated by a non-perturbative technique . This work discusses progress made to date and exhibits some computations based on the first two Neumann series terms.

  5. Influence of weather on emergency transport events coded as stroke: population-based study in Japan

    NASA Astrophysics Data System (ADS)

    Ohshige, Kenji; Hori, Yuta; Tochikubo, Osamu; Sugiyama, Mitsugi

    2006-05-01

    Studying the relation between incidence of stroke and weather is difficult because it requires large-scale community-based data collection. Despite the lack of strong evidence that weather conditions influence stroke incidence, many clinicians feel that meteorological conditions influence the onset of stroke. This study examined whether emergency events related to stroke are influenced by meteorological factors and was based on computerized records of emergency medical transport services in a Japanese city during the period January 1992-December 2003. A total of 53,585 patients transported for an event coded as stroke were analyzed in relation to meteorological factors such as temperature, humidity, and barometric pressure. Poisson regression analysis was applied to clarify the influence of daily meteorological conditions on the daily incidence of emergency transport due to events coded as stroke. Ordinary least squares regression analysis was used to evaluate the influence of weather, defined as the combination of meteorological parameters, on the occurrence of emergency transport due to events coded as stroke. Daily mean ambient temperature and daily mean relative humidity showed a statistically significant negative effect on the incidence of the emergency transport events for both men and women ( P<0.001). Daily mean barometric pressure was not significantly related to these events. The occurrence of a holiday was negatively related to the incidence ( P<0.001). Dry weather and cool weather were likely to shift the circadian curve of the incidence upward. Thus, occurrence of emergency transport due to events coded as stroke is likely to be associated with weather conditions.

  6. Influence of weather on emergency transport events coded as stroke: population-based study in Japan.

    PubMed

    Ohshige, Kenji; Hori, Yuta; Tochikubo, Osamu; Sugiyama, Mitsugi

    2006-05-01

    Studying the relation between incidence of stroke and weather is difficult because it requires large-scale community-based data collection. Despite the lack of strong evidence that weather conditions influence stroke incidence, many clinicians feel that meteorological conditions influence the onset of stroke. This study examined whether emergency events related to stroke are influenced by meteorological factors and was based on computerized records of emergency medical transport services in a Japanese city during the period January 1992-December 2003. A total of 53,585 patients transported for an event coded as stroke were analyzed in relation to meteorological factors such as temperature, humidity, and barometric pressure. Poisson regression analysis was applied to clarify the influence of daily meteorological conditions on the daily incidence of emergency transport due to events coded as stroke. Ordinary least squares regression analysis was used to evaluate the influence of weather, defined as the combination of meteorological parameters, on the occurrence of emergency transport due to events coded as stroke. Daily mean ambient temperature and daily mean relative humidity showed a statistically significant negative effect on the incidence of the emergency transport events for both men and women (P<0.001). Daily mean barometric pressure was not significantly related to these events. The occurrence of a holiday was negatively related to the incidence (P<0.001). Dry weather and cool weather were likely to shift the circadian curve of the incidence upward. Thus, occurrence of emergency transport due to events coded as stroke is likely to be associated with weather conditions.

  7. Open-Source Development of the Petascale Reactive Flow and Transport Code PFLOTRAN

    NASA Astrophysics Data System (ADS)

    Hammond, G. E.; Andre, B.; Bisht, G.; Johnson, T.; Karra, S.; Lichtner, P. C.; Mills, R. T.

    2013-12-01

    Open-source software development has become increasingly popular in recent years. Open-source encourages collaborative and transparent software development and promotes unlimited free redistribution of source code to the public. Open-source development is good for science as it reveals implementation details that are critical to scientific reproducibility, but generally excluded from journal publications. In addition, research funds that would have been spent on licensing fees can be redirected to code development that benefits more scientists. In 2006, the developers of PFLOTRAN open-sourced their code under the U.S. Department of Energy SciDAC-II program. Since that time, the code has gained popularity among code developers and users from around the world seeking to employ PFLOTRAN to simulate thermal, hydraulic, mechanical and biogeochemical processes in the Earth's surface/subsurface environment. PFLOTRAN is a massively-parallel subsurface reactive multiphase flow and transport simulator designed from the ground up to run efficiently on computing platforms ranging from the laptop to leadership-class supercomputers, all from a single code base. The code employs domain decomposition for parallelism and is founded upon the well-established and open-source parallel PETSc and HDF5 frameworks. PFLOTRAN leverages modern Fortran (i.e. Fortran 2003-2008) in its extensible object-oriented design. The use of this progressive, yet domain-friendly programming language has greatly facilitated collaboration in the code's software development. Over the past year, PFLOTRAN's top-level data structures were refactored as Fortran classes (i.e. extendible derived types) to improve the flexibility of the code, ease the addition of new process models, and enable coupling to external simulators. For instance, PFLOTRAN has been coupled to the parallel electrical resistivity tomography code E4D to enable hydrogeophysical inversion while the same code base can be used as a third

  8. A Coupled Neutron-Photon 3-D Combinatorial Geometry Monte Carlo Transport Code

    1998-06-12

    TART97 is a coupled neutron-photon, 3 dimensional, combinatorial geometry, time dependent Monte Carlo transport code. This code can run on any modern computer. It is a complete system to assist you with input preparation, running Monte Carlo calculations, and analysis of output results. TART97 is also incredibly fast: if you have used similar codes, you will be amazed at how fast this code is compared to other similar codes. Use of the entire system canmore » save you a great deal of time and energy. TART 97 is distributed on CD. This CD contains on-line documentation for all codes included in the system, the codes configured to run on a variety of computers, and many example problems that you can use to familiarize yourself with the system. TART97 completely supersedes all older versions of TART, and it is strongly recommended that users only use the most recent version of TART97 and ist data files.« less

  9. Fully energy-dependent HZETRN (a galactic cosmic-ray transport code)

    NASA Technical Reports Server (NTRS)

    Shinn, Judy L.; John, Sarah; Tripathi, Ram K.; Norbury, John W.; Wilson, John W.; Townsend, Lawrence W.

    1992-01-01

    For extended manned space missions, the radiation shielding design requires efficient and accurate cosmic-ray transport codes that can handle the physics processes in detail. The Langley Research Center galactic cosmic-ray transport code (HZETRN) is currently under development for such design use. The cross sections for the production of secondary nucleons in the existing HZETRN code are energy dependent only for nucleon collisions. The approximation of energy-independent, heavy-ion fragmentation cross section is now removed by implementing a mathematically simplified energy-dependent stepping formalism for heavy ions. The cross section at each computational grid is obtained by linear interpolation from a few tabulated data to minimize computing time. Test runs were made for galactic cosmic-ray transport through a liquid hydrogen shield and a water shield at solar minimum. The results show no appreciable change in total fluxes or computing time compared with energy-independent calculations. Differences in high LET (linear energy transfer) spectra are noted, however, because of the large variation in cross sections at the low-energy region. The high LET components are significantly higher in the new code and have important implications on biological risk estimates for heavy-ion exposure.

  10. Comparison of the transport codes HZETRN, HETC and FLUKA for galactic cosmic rays

    NASA Astrophysics Data System (ADS)

    Heinbockel, John H.; Slaba, Tony C.; Tripathi, Ram K.; Blattnig, Steve R.; Norbury, John W.; Badavi, Francis F.; Townsend, Lawrence W.; Handler, Thomas; Gabriel, Tony A.; Pinsky, Lawrence S.; Reddell, Brandon; Aumann, Aric R.

    2011-03-01

    The HZETRN deterministic radiation code is one of several tools developed to analyze the effects of harmful galactic cosmic rays (GCR) and solar particle events on mission planning and shielding for astronauts and instrumentation. This paper is a comparison study involving the two Monte Carlo transport codes, HETC-HEDS and FLUKA and the deterministic transport code, HZETRN. Each code is used to transport an ion from the 1977 solar minimum GCR spectrum impinging upon a 20 g/cm2 aluminum slab followed by a 30 g/cm2 water slab. This research is part of a systematic effort of verification and validation to quantify the accuracy of HZETRN and determine areas where it can be improved. Comparisons of dose and dose equivalent values at various depths in the water slab are presented in this report. This is followed by a comparison of the proton and forward, backward and total neutron flux at various depths in the water slab. Comparisons of the secondary light ion 2H, 3H, 3He and 4He fluxes are also examined.

  11. MCNP: a general Monte Carlo code for neutron and photon transport

    SciTech Connect

    Forster, R.A.; Godfrey, T.N.K.

    1985-01-01

    MCNP is a very general Monte Carlo neutron photon transport code system with approximately 250 person years of Group X-6 code development invested. It is extremely portable, user-oriented, and a true production code as it is used about 60 Cray hours per month by about 150 Los Alamos users. It has as its data base the best cross-section evaluations available. MCNP contains state-of-the-art traditional and adaptive Monte Carlo techniques to be applied to the solution of an ever-increasing number of problems. Excellent user-oriented documentation is available for all facets of the MCNP code system. Many useful and important variants of MCNP exist for special applications. The Radiation Shielding Information Center (RSIC) in Oak Ridge, Tennessee is the contact point for worldwide MCNP code and documentation distribution. A much improved MCNP Version 3A will be available in the fall of 1985, along with new and improved documentation. Future directions in MCNP development will change the meaning of MCNP to Monte Carlo N Particle where N particle varieties will be transported.

  12. MULTIDIMENSIONAL COUPLED PHOTON-ELECTRON TRANSPORT SIMULATIONS USING NEUTRAL PARTICLE SN CODES

    SciTech Connect

    Ilas, Dan; Williams, Mark L; Peplow, Douglas E.; Kirk, Bernadette Lugue

    2008-01-01

    During the past two years a study was underway at ORNL to assess the suitability of the popular SN neutral particle codes ANISN, DORT and TORT for coupled photon-electron calculations specific to external beam therapy of medical physics applications. The CEPXS-BFP code was used to generate the cross sections. The computational tests were performed on phantoms typical of those used in medical physics for external beam therapy, with materials simulated by water at different densities and the comparisons were made against Monte Carlo simulations that served as benchmarks. Although the results for one-dimensional calculations were encouraging, it appeared that the higher dimensional transport codes had fundamental difficulties in handling the electron transport. The results of two-dimensional simulations using the code DORT with an S16 fully symmetric quadrature set agree fairly with the reference Monte Carlo results but not well enough for clinical applications. While the photon fluxes are in better agreement (generally, within less than 5% from the reference), the discrepancy increases, sometimes very significantly, for the electron fluxes. The paper, however, focuses on the results obtained with the three-dimensional code TORT which had convergence difficulties for the electron groups. Numerical instabilities occurred in these groups. These instabilities were more pronounced with the degree of anisotropy of the problem.

  13. Space Radiation Transport Codes: A Comparative Study for Galactic Cosmic Rays Environment

    NASA Astrophysics Data System (ADS)

    Tripathi, Ram; Wilson, John W.; Townsend, Lawrence W.; Gabriel, Tony; Pinsky, Lawrence S.; Slaba, Tony

    For long duration and/or deep space human missions, protection from severe space radiation exposure is a challenging design constraint and may be a potential limiting factor. The space radiation environment consists of galactic cosmic rays (GCR), solar particle events (SPE), trapped radiation, and includes ions of all the known elements over a very broad energy range. These ions penetrate spacecraft materials producing nuclear fragments and secondary particles that damage biological tissues, microelectronic devices, and materials. In deep space missions, where the Earth's magnetic field does not provide protection from space radiation, the GCR environment is significantly enhanced due to the absence of geomagnetic cut-off and is a major component of radiation exposure. Accurate risk assessments critically depend on the accuracy of the input information as well as radiation transport codes used, and so systematic verification of codes is necessary. In this study, comparisons are made between the deterministic code HZETRN2006 and the Monte Carlo codes HETC-HEDS and FLUKA for an aluminum shield followed by a water target exposed to the 1977 solar minimum GCR spectrum. Interaction and transport of high charge ions present in GCR radiation environment provide a more stringent constraint in the comparison of the codes. Dose, dose equivalent and flux spectra are compared; details of the comparisons will be discussed, and conclusions will be drawn for future directions.

  14. Integrated TIGER Series of Coupled Electron/Photon Monte Carlo Transport Codes System.

    SciTech Connect

    VALDEZ, GREG D.

    2012-11-30

    Version: 00 Distribution is restricted to US Government Agencies and Their Contractors Only. The Integrated Tiger Series (ITS) is a powerful and user-friendly software package permitting state-of-the-art Monte Carlo solution of linear time-independent coupled electron/photon radiation transport problems, with or without the presence of macroscopic electric and magnetic fields of arbitrary spatial dependence. The goal has been to simultaneously maximize operational simplicity and physical accuracy. Through a set of preprocessor directives, the user selects one of the many ITS codes. The ease with which the makefile system is applied combines with an input scheme based on order-independent descriptive keywords that makes maximum use of defaults and internal error checking to provide experimentalists and theorists alike with a method for the routine but rigorous solution of sophisticated radiation transport problems. Physical rigor is provided by employing accurate cross sections, sampling distributions, and physical models for describing the production and transport of the electron/photon cascade from 1.0 GeV down to 1.0 keV. The availability of source code permits the more sophisticated user to tailor the codes to specific applications and to extend the capabilities of the codes to more complex applications. Version 6, the latest version of ITS, contains (1) improvements to the ITS 5.0 codes, and (2) conversion to Fortran 95. The general user friendliness of the software has been enhanced through memory allocation to reduce the need for users to modify and recompile the code.

  15. Integrated TIGER Series of Coupled Electron/Photon Monte Carlo Transport Codes System.

    2012-11-30

    Version: 00 Distribution is restricted to US Government Agencies and Their Contractors Only. The Integrated Tiger Series (ITS) is a powerful and user-friendly software package permitting state-of-the-art Monte Carlo solution of linear time-independent coupled electron/photon radiation transport problems, with or without the presence of macroscopic electric and magnetic fields of arbitrary spatial dependence. The goal has been to simultaneously maximize operational simplicity and physical accuracy. Through a set of preprocessor directives, the user selects onemore » of the many ITS codes. The ease with which the makefile system is applied combines with an input scheme based on order-independent descriptive keywords that makes maximum use of defaults and internal error checking to provide experimentalists and theorists alike with a method for the routine but rigorous solution of sophisticated radiation transport problems. Physical rigor is provided by employing accurate cross sections, sampling distributions, and physical models for describing the production and transport of the electron/photon cascade from 1.0 GeV down to 1.0 keV. The availability of source code permits the more sophisticated user to tailor the codes to specific applications and to extend the capabilities of the codes to more complex applications. Version 6, the latest version of ITS, contains (1) improvements to the ITS 5.0 codes, and (2) conversion to Fortran 95. The general user friendliness of the software has been enhanced through memory allocation to reduce the need for users to modify and recompile the code.« less

  16. Regional Atmospheric Transport Code for Hanford Emission Tracking (RATCHET). Hanford Environmental Dose Reconstruction Project

    SciTech Connect

    Ramsdell, J.V. Jr.; Simonen, C.A.; Burk, K.W.

    1994-02-01

    The purpose of the Hanford Environmental Dose Reconstruction (HEDR) Project is to estimate radiation doses that individuals may have received from operations at the Hanford Site since 1944. This report deals specifically with the atmospheric transport model, Regional Atmospheric Transport Code for Hanford Emission Tracking (RATCHET). RATCHET is a major rework of the MESOILT2 model used in the first phase of the HEDR Project; only the bookkeeping framework escaped major changes. Changes to the code include (1) significant changes in the representation of atmospheric processes and (2) incorporation of Monte Carlo methods for representing uncertainty in input data, model parameters, and coefficients. To a large extent, the revisions to the model are based on recommendations of a peer working group that met in March 1991. Technical bases for other portions of the atmospheric transport model are addressed in two other documents. This report has three major sections: a description of the model, a user`s guide, and a programmer`s guide. These sections discuss RATCHET from three different perspectives. The first provides a technical description of the code with emphasis on details such as the representation of the model domain, the data required by the model, and the equations used to make the model calculations. The technical description is followed by a user`s guide to the model with emphasis on running the code. The user`s guide contains information about the model input and output. The third section is a programmer`s guide to the code. It discusses the hardware and software required to run the code. The programmer`s guide also discusses program structure and each of the program elements.

  17. Direct multi-scale coupling of a transport code to gyrokinetic turbulence codes, with comparisons to tokamak experiments

    NASA Astrophysics Data System (ADS)

    Barnes, Michael

    2009-11-01

    To faithfully simulate ITER and other modern fusion devices, one must resolve electron and ion fluctuation scales in a five-dimensional phase space and time. Simultaneously, one must account for the interaction of this turbulence with the slow evolution of the large-scale plasma profiles. Because of the enormous range of scales involved and the high dimensionality of the problem, resolved first-principles simulations of the full core volume over the confinement time are very challenging using conventional (brute force) techniques. In order to address this problem, we have developed a new approach in which turbulence calculations from multiple gyrokinetic flux tube simulations are coupled together using gyrokinetic transport equations to obtain self-consistent equilibrium profiles and corresponding turbulent fluxes. This multi-scale approach is embodied in a new code, Trinity, which is capable of evolving equilibrium profiles for multiple species, including electromagnetic effects and realistic magnetic geometry, at a fraction of the cost of conventional direct numerical simulations. Key components in the cost reduction are the extreme parallelism enabled by the use of coupled flux tubes and the use of a nonlinear implicit algorithm to take large time steps when evolving the equilibrium. In this talk, we describe the multi-scale model employed in Trinity and present simulation results using nonlinear fluxes calculated with the gyrokinetic turbulence codes GS2 and GENE. We compare the numerical predictions from Trinity simulations with experimental results from a number of fusion devices, including JET and MAST.

  18. Reanalysis of Radiation Belt Electron Phase Space Density using the UCLA 1-D VERB code and Kalman filtering: Correlation between the inner edge of the outer radiation belt phase space density and the plasmapause location

    NASA Astrophysics Data System (ADS)

    Espy, P. J.; Daae, M.; Shprits, Y.

    2010-12-01

    The correlation between the inner edge of the outer radiation belt phase space density (PSD) and the plasmapause location (Lpp) using reanalysis is investigated. A large data set is applied for the statistical analysis, using data from 1990-1991 from the CRRES satellite, GEO 1989, GPS-ns18 and Akebono. These data are incorporated into reanalysis by means of a Kalman filter with the UCLA 1-D VERB code. The result is a continuous radial and temporal distribution of the PSD from L*=3 to L*=7. The innovation vector of the reconstructed PSD can give us information about regions where local loss or source processes are dominating. We analyze both the PSD and the innovation vector by binning them into slots of Dst and Kp values. This has been done by finding the time for when the Dst (Kp) is within each bin-size of 20 nT (1) from 10 nT to -130 nT (1 to 8). The PSD and innovation vector was then averaged over each of those times. The result shows a good correlation between the location of the inner edge of the outer radiation belt in the PSD and the location of the plasmapause, which is consistent with previous observations. The boundary between the inner edge of the radiation belt and the Lpp becomes sharper, and the radiation belt becomes thinner, during times of high geomagnetic activity. The innovation vector shows that the inner edge of the source region also lines up well with the Lpp, and further showing a battle between losses and sources during active times. This study also illustrates how data assimilation in the radiation belts can be used to understand the underlining processes of acceleration and loss in the inner magnetosphere.

  19. Physics of a magnetic filter for negative ion sources. I. Collisional transport across the filter in an ideal, 1D filter

    SciTech Connect

    Boeuf, J. P.; Chaudhury, B.; Garrigues, L.

    2012-11-15

    Magnetic filters are used in negative ion sources for neutral beam injection in fusion devices to reduce the electron temperature in the extraction region in order to limit negative ion destruction by fast electrons. The drop in electron temperature through the filter is due to the enhanced residence time and collisional energy losses of electrons trapped in the magnetic field. The mechanisms controlling particle and energy transport through the magnetic filter in negative ion sources of the ITER type are still not clear and the aim of this paper is to clarify and quantify these mechanisms. A particle-in-cell Monte Carlo simulation is used to revisit and analyze the role and operation of the magnetic filter in an 'ideal' one-dimensional configuration and to study the stability of the one-dimensional solution in a two-dimensional configuration with periodic boundary conditions. The roles of collisions and instabilities on electron transport through the filter are discussed. The influence of a more realistic geometry on electron transport through the filter is analyzed in the companion paper [Boeuf et al., Phys. Plasmas 19, 113510 (2012)].

  20. Parallelism to solute transport code MT3DMS and case study in TU. Freiberg

    NASA Astrophysics Data System (ADS)

    Abdelaziz, Ramadan; Leb, Hai Ha

    2014-05-01

    A parallel software for 3-D Multi-Species Transport Model MT3DMS was developed. Open Multiprocessing (OpenMP) was used for communication within the processors. MT3DMS emulated the solute transport by dividing the calculation into flow and transport steps. A new preconditioner, derived from Symmetric Successive Over Relaxation (SSOR), is added into the generalized conjugate gradient solver. A case study in the test field at TU Bergakademie Freiberg was used to produce the results and analyze the code performance. A demonstration test field indicated that the parallel mode for MT3DMS is accessible within a processor and problem size. A low timeframe occurs due to speedups for the field test of the solute transport model.

  1. A heterocyclic compound CE-103 inhibits dopamine reuptake and modulates dopamine transporter and dopamine D1-D3 containing receptor complexes.

    PubMed

    Sase, Ajinkya; Aher, Yogesh D; Saroja, Sivaprakasam R; Ganesan, Minu Karthika; Sase, Sunetra; Holy, Marion; Höger, Harald; Bakulev, Vasiliy; Ecker, Gerhard F; Langer, Thierry; Sitte, Harald H; Leban, Johann; Lubec, Gert

    2016-03-01

    A series of compounds have been reported to enhance memory via the DA system and herein a heterocyclic compound was tested for working memory (WM) enhancement. 2-((benzhydrylsulfinyl)methyl)thiazole (CE-103) was synthesized in a six-step synthesis. Binding of CE-103 to the dopamine (DAT), serotonin (SERT) and norepinephrine (NET) transporters and dopamine reuptake inhibition was tested as well as blood brain permeation and a screen for GPCR targets. 60 male Sprague Dawley rats were divided into six groups: CE-103 treated 1-10 mg/kg body weight, trained (TDI) and yoked (YDI) and vehicle treated, trained (TVI) and yoked (YVI) rats. Daily single intraperitoneal injections for a period of 10 days were administered and rats were tested in a radial arm maze (RAM). Hippocampi were taken 6 h following the last day of training and complexes containing the unphosphorylated or phosphorylated dopamine transporter (DAT) and complexes containing the D1-3 dopamine receptor subunits were determined. CE-103 was binding to the DAT but insignificantly to SERT or NET and dopamine reuptake was blocked specifically (IC50 = 14.73 μM). From day eight the compound was decreasing WM errors in the RAM significantly at both doses tested as compared to the vehicle controls. In the trained CE-103-treated group levels of the complex containing the phosphorylated dopamine transporter (pDAT) as well as D1R were decreased while levels of complexes containing D2R and D3R were significantly increased. CE-103 was shown to enhance spatial WM and DA reuptake inhibition with subsequent modulation of D1-3 receptors is proposed as a possible mechanism of action. PMID:26407764

  2. Pedestal Fueling Simulations with a Coupled Kinetic-kinetic Plasma-neutral Transport Code

    SciTech Connect

    D.P. Stotler, C.S. Chang, S.H. Ku, J. Lang and G.Y. Park

    2012-08-29

    A Monte Carlo neutral transport routine, based on DEGAS2, has been coupled to the guiding center ion-electron-neutral neoclassical PIC code XGC0 to provide a realistic treatment of neutral atoms and molecules in the tokamak edge plasma. The DEGAS2 routine allows detailed atomic physics and plasma-material interaction processes to be incorporated into these simulations. The spatial pro le of the neutral particle source used in the DEGAS2 routine is determined from the uxes of XGC0 ions to the material surfaces. The kinetic-kinetic plasma-neutral transport capability is demonstrated with example pedestal fueling simulations.

  3. Krylov subspace iterations for the calculation of K-Eigenvalues with sn transport codes

    SciTech Connect

    Warsa, J. S.; Wareing, T. A.; Morel, J. E.; McGhee, J. M.; Lehoucq, R. B.

    2002-01-01

    We apply the Implicitly Restarted Arnoldi Method (IRAM), a Krylov subspace iterative method, to the calculation of k-eigenvalues for criticality problems. We show that the method can be implemented with only modest changes to existing power iteration schemes in an SN transport code. Numerical results on three dimensional unstructured tetrahedral meshes are shown. Although we only compare the IRAM to unaccelerated power iteration, the results indicate that the IRAM is a potentially efficient and powerful technique, especially for problems with dominance ratios approaching unity. Key Words: criticality eigenvalues, Implicitly Restarted Arnoldi Method (IRAM), deterministic transport methods

  4. Application of the ASME code in designing containment vessels for packages used to transport radioactive materials

    SciTech Connect

    Raske, D.T.; Wang, Z.

    1992-07-01

    The primary concern governing the design of shipping packages containing radioactive materials is public safety during transport. When these shipments are within the regulatory jurisdiction of the US Department of Energy, the recommended design criterion for the primary containment vessel is either Section III or Section VIII, Division 1, of the ASME Boiler and Pressure Vessel Code, depending on the activity of the contents. The objective of this paper is to discuss the design of a prototypic containment vessel representative of a packaging for the transport of high-level radioactive material.

  5. Energy Conservation Tests of a Coupled Kinetic-kinetic Plasma-neutral Transport Code

    SciTech Connect

    Stotler, D. P.; Chang, C. S.; Ku, S. H.; Lang, J.; Park, G.

    2012-08-29

    A Monte Carlo neutral transport routine, based on DEGAS2, has been coupled to the guiding center ion-electron-neutral neoclassical PIC code XGC0 to provide a realistic treatment of neutral atoms and molecules in the tokamak edge plasma. The DEGAS2 routine allows detailed atomic physics and plasma-material interaction processes to be incorporated into these simulations. The spatial pro le of the neutral particle source used in the DEGAS2 routine is determined from the uxes of XGC0 ions to the material surfaces. The kinetic-kinetic plasma-neutral transport capability is demonstrated with example pedestal fueling simulations.

  6. One-dimensional transport code modeling of the divertor-limiter region in tokamaks

    SciTech Connect

    Ogden, J.M.; Singer, C.E.; Post, D.E.; Jensen, R.V.; Seidl, F.G.P.

    1981-12-01

    A model of the diverter-limiter scrapeoff region has been incorporated into the BALDUR one-dimensional tokamak transport code. Simulations of the proposed Toroidal Fusion Test Reactor (TFTR), and Poloidal Diverter (PDX) experiments and existing Alcator-A tokamak experiments have been carried out for ohmic and neutral beam heated cases. In particular it is studied how the edge conditions and energy-loss mechanisms in PDX depend upon plasma density, and results are compared with analytic estimates. The sensitivity of the results to changes in the transport coefficients and scrapeoff model is discussed with particular reference to the power loading on the TFTR limiter. 13 refs.

  7. One-dimensional transport code modelling of the limiter-divertor region in tokamaks

    SciTech Connect

    Ogden, J.M.; Post, D.E.; Jensen, R.V.; Seidl, F.G.P.

    1980-02-01

    A model of the limiter-divertor scrape-off region has been incorporated into the BALDUR one-dimensional tokamak transport code. Simulations of PDX and ALCATOR have been carried out for ohmic and neutral beam heated cases. In particular, we have studied how the edge conditions and energy loss mechanisms of PDX depend upon plasma density, and compared our results with analytic estimates. The sensitivity of the results to changes in the transport coefficients and scrape-off model is also discussed.

  8. Simulations of 4D edge transport and dynamics using the TEMPEST gyro-kinetic code

    NASA Astrophysics Data System (ADS)

    Rognlien, T. D.; Cohen, B. I.; Cohen, R. H.; Dorr, M. R.; Hittinger, J. A. F.; Kerbel, G. D.; Nevins, W. M.; Xiong, Z.; Xu, X. Q.

    2006-10-01

    Simulation results are presented for tokamak edge plasmas with a focus on the 4D (2r,2v) option of the TEMPEST continuum gyro-kinetic code. A detailed description of a variety of kinetic simulations is reported, including neoclassical radial transport from Coulomb collisions, electric field generation, dynamic response to perturbations by geodesic acoustic modes, and parallel transport on open magnetic-field lines. Comparison is made between the characteristics of the plasma solutions on closed and open magnetic-field line regions separated by a magnetic separatrix, and simple physical models are used to qualitatively explain the differences observed in mean flow and electric-field generation. The status of extending the simulations to 5D turbulence will be summarized. The code structure used in this ongoing project is also briefly described, together with future plans.

  9. Hyperfine-induced spin relaxation of a hopping carrier: implications for spin transport in 1-D vs 3-D organic semiconductors

    NASA Astrophysics Data System (ADS)

    Mkhitaryan, Vagharsh; Dobrovitski, Viatcheslav; 0 Team

    2015-03-01

    The hyperfine coupling of a carrier spin to a nuclear spin bath is a predominant channel for the carrier spin relaxation in organic semiconductors. We investigate the hyperfine-induced spin relaxation of a carrier performing a random walk on a d-dimensional regular lattice theoretically, in a transport regime typical for organic semiconductors. We show that in d = 1 and d = 2 the time dependence of spin polarization, P (t) , is dominated by a superexponential decay, crossing over to an exponential tail at long times. The faster decay is attributed to multiple self-intersections (returns) of the random walk trajectories, which occur more often in lower dimensions. We also show, analytically and numerically, that the returns lead to sensitivity of P (t) to external electric and magnetic fields, and this sensitivity strongly depends on dimensionality of the system (d = 1 vs. d = 3). Furthermore, we consider the coordinate dependence of spin polarization, σ (r) , in a hypothetic lateral or vertical organic spin-valve device. We demonstrate that, while σ (r) is essentially exponential, the effect of multiple self-intersections can be identified in transport measurements from the specific field-dependence of spin relaxation length. This work was supported by the Department of Energy-Basic Energy Sciences under Contract No. DE-AC02-07CH11358.

  10. The three-dimensional, discrete ordinates neutral particle transport code TORT: An overview

    SciTech Connect

    Azmy, Y.Y.

    1996-12-31

    The centerpiece of the Discrete Ordinates Oak Ridge System (DOORS), the three-dimensional neutral particle transport code TORT is reviewed. Its most prominent features pertaining to large applications, such as adjustable problem parameters, memory management, and coarse mesh methods, are described. Advanced, state-of-the-art capabilities including acceleration and multiprocessing are summarized here. Future enhancement of existing graphics and visualization tools is briefly presented.

  11. BRYNTRN: A baryon transport computer code, computation procedures and data base

    NASA Technical Reports Server (NTRS)

    Wilson, John W.; Townsend, Lawrence W.; Chun, Sang Y.; Buck, Warren W.; Khan, Ferdous; Cucinotta, Frank

    1988-01-01

    The development is described of an interaction data base and a numerical solution to the transport of baryons through the arbitrary shield material based on a straight ahead approximation of the Boltzmann equation. The code is most accurate for continuous energy boundary values but gives reasonable results for discrete spectra at the boundary with even a relatively coarse energy grid (30 points) and large spatial increments (1 cm in H2O).

  12. Optimizations of the energy grid search algorithm in continuous-energy Monte Carlo particle transport codes

    NASA Astrophysics Data System (ADS)

    Walsh, Jonathan A.; Romano, Paul K.; Forget, Benoit; Smith, Kord S.

    2015-11-01

    In this work we propose, implement, and test various optimizations of the typical energy grid-cross section pair lookup algorithm in Monte Carlo particle transport codes. The key feature common to all of the optimizations is a reduction in the length of the vector of energies that must be searched when locating the index of a particle's current energy. Other factors held constant, a reduction in energy vector length yields a reduction in CPU time. The computational methods we present here are physics-informed. That is, they are designed to utilize the physical information embedded in a simulation in order to reduce the length of the vector to be searched. More specifically, the optimizations take advantage of information about scattering kinematics, neutron cross section structure and data representation, and also the expected characteristics of a system's spatial flux distribution and energy spectrum. The methods that we present are implemented in the OpenMC Monte Carlo neutron transport code as part of this work. The gains in computational efficiency, as measured by overall code speedup, associated with each of the optimizations are demonstrated in both serial and multithreaded simulations of realistic systems. Depending on the system, simulation parameters, and optimization method employed, overall code speedup factors of 1.2-1.5, relative to the typical single-nuclide binary search algorithm, are routinely observed.

  13. Advances and future needs in particle production and transport code developments

    SciTech Connect

    Mokhov, N.V.; /Fermilab

    2009-12-01

    The next generation of accelerators and ever expanding needs of existing accelerators demand new developments and additions to Monte-Carlo codes, with an emphasis on enhanced modeling of elementary particle and heavy-ion interactions and transport. Challenges arise from extremely high beam energies and beam power, increasing complexity of accelerators and experimental setups, as well as design, engineering and performance constraints. All these put unprecedented requirements on the accuracy of particle production predictions, the capability and reliability of the codes used in planning new accelerator facilities and experiments, the design of machine, target and collimation systems, detectors and radiation shielding and minimization of their impact on environment. Recent advances in widely-used general-purpose all-particle codes are described for the most critical modules such as particle production event generators, elementary particle and heavy ion transport in an energy range which spans up to 17 decades, nuclide inventory and macroscopic impact on materials, and dealing with complex geometry of accelerator and detector structures. Future requirements for developing physics models and Monte-Carlo codes are discussed.

  14. Analytical three-dimensional neutron transport benchmarks for verification of nuclear engineering codes. Final report

    SciTech Connect

    Ganapol, B.D.; Kornreich, D.E.

    1997-07-01

    Because of the requirement of accountability and quality control in the scientific world, a demand for high-quality analytical benchmark calculations has arisen in the neutron transport community. The intent of these benchmarks is to provide a numerical standard to which production neutron transport codes may be compared in order to verify proper operation. The overall investigation as modified in the second year renewal application includes the following three primary tasks. Task 1 on two dimensional neutron transport is divided into (a) single medium searchlight problem (SLP) and (b) two-adjacent half-space SLP. Task 2 on three-dimensional neutron transport covers (a) point source in arbitrary geometry, (b) single medium SLP, and (c) two-adjacent half-space SLP. Task 3 on code verification, includes deterministic and probabilistic codes. The primary aim of the proposed investigation was to provide a suite of comprehensive two- and three-dimensional analytical benchmarks for neutron transport theory applications. This objective has been achieved. The suite of benchmarks in infinite media and the three-dimensional SLP are a relatively comprehensive set of one-group benchmarks for isotropically scattering media. Because of time and resource limitations, the extensions of the benchmarks to include multi-group and anisotropic scattering are not included here. Presently, however, enormous advances in the solution for the planar Green`s function in an anisotropically scattering medium have been made and will eventually be implemented in the two- and three-dimensional solutions considered under this grant. Of particular note in this work are the numerical results for the three-dimensional SLP, which have never before been presented. The results presented were made possible only because of the tremendous advances in computing power that have occurred during the past decade.

  15. Validation of a multi-layer Green's function code for ion beam transport

    NASA Astrophysics Data System (ADS)

    Walker, Steven; Tweed, John; Tripathi, Ram; Badavi, Francis F.; Miller, Jack; Zeitlin, Cary; Heilbronn, Lawrence

    To meet the challenge of future deep space programs, an accurate and efficient engineering code for analyzing the shielding requirements against high-energy galactic heavy radiations is needed. In consequence, a new version of the HZETRN code capable of simulating high charge and energy (HZE) ions with either laboratory or space boundary conditions is currently under development. The new code, GRNTRN, is based on a Green's function approach to the solution of Boltzmann's transport equation and like its predecessor is deterministic in nature. The computational model consists of the lowest order asymptotic approximation followed by a Neumann series expansion with non-perturbative corrections. The physical description includes energy loss with straggling, nuclear attenuation, nuclear fragmentation with energy dispersion and down shift. Code validation in the laboratory environment is addressed by showing that GRNTRN accurately predicts energy loss spectra as measured by solid-state detectors in ion beam experiments with multi-layer targets. In order to validate the code with space boundary conditions, measured particle fluences are propagated through several thicknesses of shielding using both GRNTRN and the current version of HZETRN. The excellent agreement obtained indicates that GRNTRN accurately models the propagation of HZE ions in the space environment as well as in laboratory settings and also provides verification of the HZETRN propagator.

  16. TERRA: a computer code for simulating the transport of environmentally released radionuclides through agriculture

    SciTech Connect

    Baes, C.F. III; Sharp, R.D.; Sjoreen, A.L.; Hermann, O.W.

    1984-11-01

    TERRA is a computer code which calculates concentrations of radionuclides and ingrowing daughters in surface and root-zone soil, produce and feed, beef, and milk from a given deposition rate at any location in the conterminous United States. The code is fully integrated with seven other computer codes which together comprise a Computerized Radiological Risk Investigation System, CRRIS. Output from either the long range (> 100 km) atmospheric dispersion code RETADD-II or the short range (<80 km) atmospheric dispersion code ANEMOS, in the form of radionuclide air concentrations and ground deposition rates by downwind location, serves as input to TERRA. User-defined deposition rates and air concentrations may also be provided as input to TERRA through use of the PRIMUS computer code. The environmental concentrations of radionuclides predicted by TERRA serve as input to the ANDROS computer code which calculates population and individual intakes, exposures, doses, and risks. TERRA incorporates models to calculate uptake from soil and atmospheric deposition on four groups of produce for human consumption and four groups of livestock feeds. During the environmental transport simulation, intermediate calculations of interception fraction for leafy vegetables, produce directly exposed to atmospherically depositing material, pasture, hay, and silage are made based on location-specific estimates of standing crop biomass. Pasture productivity is estimated by a model which considers the number and types of cattle and sheep, pasture area, and annual production of other forages (hay and silage) at a given location. Calculations are made of the fraction of grain imported from outside the assessment area. TERRA output includes the above calculations and estimated radionuclide concentrations in plant produce, milk, and a beef composite by location.

  17. Adaptive software-defined coded modulation for ultra-high-speed optical transport

    NASA Astrophysics Data System (ADS)

    Djordjevic, Ivan B.; Zhang, Yequn

    2013-10-01

    In optically-routed networks, different wavelength channels carrying the traffic to different destinations can have quite different optical signal-to-noise ratios (OSNRs) and signal is differently impacted by various channel impairments. Regardless of the data destination, an optical transport system (OTS) must provide the target bit-error rate (BER) performance. To provide target BER regardless of the data destination we adjust the forward error correction (FEC) strength. Depending on the information obtained from the monitoring channels, we select the appropriate code rate matching to the OSNR range that current channel OSNR falls into. To avoid frame synchronization issues, we keep the codeword length fixed independent of the FEC code being employed. The common denominator is the employment of quasi-cyclic (QC-) LDPC codes in FEC. For high-speed implementation, low-complexity LDPC decoding algorithms are needed, and some of them will be described in this invited paper. Instead of conventional QAM based modulation schemes, we employ the signal constellations obtained by optimum signal constellation design (OSCD) algorithm. To improve the spectral efficiency, we perform the simultaneous rate adaptation and signal constellation size selection so that the product of number of bits per symbol × code rate is closest to the channel capacity. Further, we describe the advantages of using 4D signaling instead of polarization-division multiplexed (PDM) QAM, by using the 4D MAP detection, combined with LDPC coding, in a turbo equalization fashion. Finally, to solve the problems related to the limited bandwidth of information infrastructure, high energy consumption, and heterogeneity of optical networks, we describe an adaptive energy-efficient hybrid coded-modulation scheme, which in addition to amplitude, phase, and polarization state employs the spatial modes as additional basis functions for multidimensional coded-modulation.

  18. A comparison of total reaction cross section models used in particle and heavy ion transport codes

    NASA Astrophysics Data System (ADS)

    Sihver, Lembit; Lantz, M.; Takechi, M.; Kohama, A.; Ferrari, A.; Cerutti, F.; Sato, T.

    To be able to calculate the nucleon-nucleus and nucleus-nucleus total reaction cross sections with precision is very important for studies of basic nuclear properties, e.g. nuclear structure. This is also of importance for particle and heavy ion transport calculations because, in all particle and heavy ion transport codes, the probability function that a projectile particle will collide within a certain distance x in the matter depends on the total reaction cross sections. Furthermore, the total reaction cross sections will also scale the calculated partial fragmentation cross sections. It is therefore crucial that accurate total reaction cross section models are used in the transport calculations. In this paper, different models for calculating nucleon-nucleus and nucleus-nucleus total reaction cross sections are compared and discussed.

  19. Code System Calculate One-Dimensional Vertical Transport Unsaturated Soil Zone

    1989-03-01

    SESOIL, as an integrated screening-level soil compartment model, is designed to simultaneously model water transport, sediment transport, and pollutant fate. SESOIL is a one-dimensional vertical transport model for the unsaturated soil zone. Only one compound at a time can be considered. The model is based on mass balance and equilibrium partitioning of the chemical between different phases (dissolved, sorbed, vapor, and pure). The SESOIL model was designed to perform long-term simulations of chemical transport andmore » transformations in the soil and uses theoretically derived equations to represent water transport, sediment transport on the land surface, pollutant transformation, and migration of the pollutant to the atmosphere and groundwater. Climatic data, compartment geometry, and soil and chemical property data are the major components used in the equations. SESOIL was developed as a screening-level model, utilizing less soil, chemical, and meteorological values as input than most other similar models. Output of SESOIL includes time-varying pollutant concentrations at various soil depths and pollutant loss from the unsaturated zone in terms of surface runoff, percolation to the groundwater, volatilization, and degradation. The February 1995 release corrects an error that caused the code to fail when average monthly air temperature was -10C and includes an improved iteration procedure for the mass balance equations in the model. PLEASE NOTE: The RISKPRO information management software (see OTHER PROG/OPER SYS INFO) was used by the developers of the New SESOIL User''s Guide in their study and revisions of SESOIL. Using RISKPRO in conjunction with SESOIL is an option, and it may provide the easiest way to use SESOIL. The other option, use of SESOIL in stand-alone mode, has been tested and used. The stand-alone option is covered in ''Instructions for Running Stand-Alone SESOIL Code'', and in ''A Seasonal Soil Compartment Model''.« less

  20. Benchmarking Heavy Ion Transport Codes FLUKA, HETC-HEDS MARS15, MCNPX, and PHITS

    SciTech Connect

    Ronningen, Reginald Martin; Remec, Igor; Heilbronn, Lawrence H.

    2013-06-07

    Powerful accelerators such as spallation neutron sources, muon-collider/neutrino facilities, and rare isotope beam facilities must be designed with the consideration that they handle the beam power reliably and safely, and they must be optimized to yield maximum performance relative to their design requirements. The simulation codes used for design purposes must produce reliable results. If not, component and facility designs can become costly, have limited lifetime and usefulness, and could even be unsafe. The objective of this proposal is to assess the performance of the currently available codes PHITS, FLUKA, MARS15, MCNPX, and HETC-HEDS that could be used for design simulations involving heavy ion transport. We plan to access their performance by performing simulations and comparing results against experimental data of benchmark quality. Quantitative knowledge of the biases and the uncertainties of the simulations is essential as this potentially impacts the safe, reliable and cost effective design of any future radioactive ion beam facility. Further benchmarking of heavy-ion transport codes was one of the actions recommended in the Report of the 2003 RIA R&D Workshop".

  1. Comparison of the transport codes HZETRN, HETC and FLUKA for a solar particle event

    NASA Astrophysics Data System (ADS)

    Heinbockel, John H.; Slaba, Tony C.; Blattnig, Steve R.; Tripathi, Ram K.; Townsend, Lawrence W.; Handler, Thomas; Gabriel, Tony A.; Pinsky, Lawrence S.; Reddell, Brandon; Clowdsley, Martha S.; Singleterry, Robert C.; Norbury, John W.; Badavi, Francis F.; Aghara, Sukesh K.

    2011-03-01

    The protection of astronauts and instrumentation from galactic cosmic rays and solar particle events is one of the primary constraints associated with mission planning in low earth orbit or deep space. To help satisfy this constraint, several computational tools have been developed to analyze the effectiveness of various shielding materials and structures exposed to space radiation. These tools are now being carefully scrutinized through a systematic effort of verification, validation, and uncertainty quantification. In this benchmark study, the deterministic transport code HZETRN is compared to the Monte Carlo transport codes HETC-HEDS and FLUKA for a 30 g/cm2 water target protected by a 20 g/cm2 aluminum shield exposed to a parameterization of the February 1956 solar particle event. Neutron and proton fluences as well as dose and dose equivalent are compared at various depths in the water target. The regions of agreement and disagreement between the three codes are quantified and discussed, and recommendations for future work are given.

  2. Generation of Bondarenko F factors with MCNP5 for use in scale transport codes

    SciTech Connect

    Hart, S.; Maldonado, G. I.

    2012-07-01

    Generally there are three methods of cross-section processing available when using the Scale computer code. They are NITAWL, BONAMI, and CENTRM, with CENTRM being the most common and accurate, but computationally expensive. In order to improve the accuracy of BONAMI (which uses the Bondarenko Method), new Bondarenko/F Factors were to be generated that will smooth out the current F Factors that are being generated using CENTRM. The case discussed here involves using a dedicated Monte Carlo code (MCNP5) to calculate the transport solution from which shielded cross-sections can be produced directly for the transport geometry/mesh. A simple program was created to parse and collect the tallied cross-sections from the MCNP output, which was fed into a modified CLAROL input (a module that replaces or adds data in an AMPX master library), which used the cross-sections obtained from MCNP to calculate new F-factors and update the SCALE library. This approach allows the use of other methods to generate the shielded cross-sections and for easy comparison to existing results. Initial proof-of-principle calculations were carried out for an various cases using various transport solvers, such as NEWT, KENO, and XSDRN, with BONAMI in SCALE. Poor results were obtained using cross-sections generated using infinite homogeneous cases, but good results were obtained by using pin cells in an infinite lattice. (authors)

  3. PRESTO-II: a low-level waste environmental transport and risk assessment code

    SciTech Connect

    Fields, D.E.; Emerson, C.J.; Chester, R.O.; Little, C.A.; Hiromoto, G.

    1986-04-01

    PRESTO-II (Prediction of Radiation Effects from Shallow Trench Operations) is a computer code designed for the evaluation of possible health effects from shallow-land and, waste-disposal trenches. The model is intended to serve as a non-site-specific screening model for assessing radionuclide transport, ensuing exposure, and health impacts to a static local population for a 1000-year period following the end of disposal operations. Human exposure scenarios considered include normal releases (including leaching and operational spillage), human intrusion, and limited site farming or reclamation. Pathways and processes of transit from the trench to an individual or population include ground-water transport, overland flow, erosion, surface water dilution, suspension, atmospheric transport, deposition, inhalation, external exposure, and ingestion of contaminated beef, milk, crops, and water. Both population doses and individual doses, as well as doses to the intruder and farmer, may be calculated. Cumulative health effects in terms of cancer deaths are calculated for the population over the 1000-year period using a life-table approach. Data are included for three example sites: Barnwell, South Carolina; Beatty, Nevada; and West Valley, New York. A code listing and example input for each of the three sites are included in the appendices to this report.

  4. Overview of development and design of MPACT: Michigan parallel characteristics transport code

    SciTech Connect

    Kochunas, B.; Collins, B.; Jabaay, D.; Downar, T. J.; Martin, W. R.

    2013-07-01

    MPACT (Michigan Parallel Characteristics Transport Code) is a new reactor analysis tool. It is being developed by students and research staff at the University of Michigan to be used for an advanced pin-resolved transport capability within VERA (Virtual Environment for Reactor Analysis). VERA is the end-user reactor simulation tool being produced by the Consortium for the Advanced Simulation of Light Water Reactors (CASL). The MPACT development project is itself unique for the way it is changing how students do research to achieve the instructional and research goals of an academic institution, while providing immediate value to industry. The MPACT code makes use of modern lean/agile software processes and extensive testing to maintain a level of productivity and quality required by CASL. MPACT's design relies heavily on object-oriented programming concepts and design patterns and is programmed in Fortran 2003. These designs are explained and illustrated as to how they can be readily extended to incorporate new capabilities and research ideas in support of academic research objectives. The transport methods currently implemented in MPACT include the 2-D and 3-D method of characteristics (MOC) and 2-D and 3-D method of collision direction probabilities (CDP). For the cross section resonance treatment, presently the subgroup method and the new embedded self-shielding method (ESSM) are implemented within MPACT. (authors)

  5. A Computer Code System for the Calculation of Reactivity and Kinetic Parameters by One-Dimensional Neutron Transport Perturbation Theory.

    1985-02-01

    Version 00 TP1 is a transport theory code, developed to determine reactivity effects and kinetic parameters such as effective delayed neutron fractions and mean generation time by applying the usual perturbation formalism for one-dimensional geometry.

  6. The EGS4 Code System: Solution of Gamma-ray and Electron Transport Problems

    DOE R&D Accomplishments Database

    Nelson, W. R.; Namito, Yoshihito

    1990-03-01

    In this paper we present an overview of the EGS4 Code System -- a general purpose package for the Monte Carlo simulation of the transport of electrons and photons. During the last 10-15 years EGS has been widely used to design accelerators and detectors for high-energy physics. More recently the code has been found to be of tremendous use in medical radiation physics and dosimetry. The problem-solving capabilities of EGS4 will be demonstrated by means of a variety of practical examples. To facilitate this review, we will take advantage of a new add-on package, called SHOWGRAF, to display particle trajectories in complicated geometries. These are shown as 2-D laser pictures in the written paper and as photographic slides of a 3-D high-resolution color monitor during the oral presentation. 11 refs., 15 figs.

  7. Domain Decomposition of a Constructive Solid Geometry Monte Carlo Transport Code

    SciTech Connect

    O'Brien, M J; Joy, K I; Procassini, R J; Greenman, G M

    2008-12-07

    Domain decomposition has been implemented in a Constructive Solid Geometry (CSG) Monte Carlo neutron transport code. Previous methods to parallelize a CSG code relied entirely on particle parallelism; but in our approach we distribute the geometry as well as the particles across processors. This enables calculations whose geometric description is larger than what could fit in memory of a single processor, thus it must be distributed across processors. In addition to enabling very large calculations, we show that domain decomposition can speed up calculations compared to particle parallelism alone. We also show results of a calculation of the proposed Laser Inertial-Confinement Fusion-Fission Energy (LIFE) facility, which has 5.6 million CSG parts.

  8. The EGS4 Code System: Solution of gamma-ray and electron transport problems

    SciTech Connect

    Nelson, W.R.; Namito, Yoshihito.

    1990-02-09

    In this paper we present an overview of the EGS4 Code System -- a general purpose package for the Monte Carlo simulation of the transport of electrons and photons. During the last 10-15 years EGS has been widely used to design accelerators and detectors for high-energy physics. More recently the code has been found to be of tremendous use in medical radiation physics and dosimetry. The problem-solving capabilities of EGS4 will be demonstrated by means of a variety of practical examples. To facilitate this review, we will take advantage of a new add-on package, called SHOWGRAF, to display particle trajectories in complicated geometries. These are shown as 2-D laser pictures in the written paper and as photographic slides of a 3-D high-resolution color monitor during the oral presentation. 11 refs., 15 figs.

  9. Application of three-dimensional transport code to the analysis of the neutron streaming experiment

    SciTech Connect

    Chatani, K.; Slater, C.O.

    1990-01-01

    This paper summarized the calculational results of neutron streaming through a Clinch River Breeder Reactor (CRBR) Prototype coolant pipe chaseway. Particular emphasis is placed on results at bends in the chaseway. Calculations were performed with three three-dimensional codes: the discrete ordinates radiation transport code TORT and Monte Carlo radiation transport code MORSE, which were developed by Oak Ridge National Laboratory (ORNL), and the discrete ordinates code ENSEMBLE, which was developed in Japan. The purpose of the calculations is not only to compare the calculational results with the experimental results, but also to compare the results of TORT and MORSE with those of ENSEMBLE. In the TORT calculations, two types of difference methods, weighted-difference method was applied in ENSEMBLE calculation. Both TORT and ENSEMBLE produced nearly the same calculational results, but differed in the number of iterations required for converging each neutron group. Also, the two types of difference methods in the TORT calculations showed no appreciable variance in the number of iterations required. However, a noticeable disparity in the computer times and some variation in the calculational results did occur. The comparisons of the calculational results with the experimental results, showed for the epithermal neutron flux generally good agreement in the first and second legs and at the first bend where the two-dimensional modeling might be difficult. Results were fair to poor along the centerline of the first leg near the opening to the second leg because of discrete ordinates ray effects. Additionally, the agreement was good throughout the first and second legs for the thermal neutron region. Calculations with MORSE were made. These calculational results and comparisons are described also. 8 refs., 4 figs.

  10. ITS version 5.0 : the integrated TIGER series of coupled electron/photon Monte Carlo transport codes.

    SciTech Connect

    Franke, Brian Claude; Kensek, Ronald Patrick; Laub, Thomas William

    2004-06-01

    ITS is a powerful and user-friendly software package permitting state of the art Monte Carlo solution of linear time-independent couple electron/photon radiation transport problems, with or without the presence of macroscopic electric and magnetic fields of arbitrary spatial dependence. Our goal has been to simultaneously maximize operational simplicity and physical accuracy. Through a set of preprocessor directives, the user selects one of the many ITS codes. The ease with which the makefile system is applied combines with an input scheme based on order-independent descriptive keywords that makes maximum use of defaults and internal error checking to provide experimentalists and theorists alike with a method for the routine but rigorous solution of sophisticated radiation transport problems. Physical rigor is provided by employing accurate cross sections, sampling distributions, and physical models for describing the production and transport of the electron/photon cascade from 1.0 GeV down to 1.0 keV. The availability of source code permits the more sophisticated user to tailor the codes to specific applications and to extend the capabilities of the codes to more complex applications. Version 5.0, the latest version of ITS, contains (1) improvements to the ITS 3.0 continuous-energy codes, (2)multigroup codes with adjoint transport capabilities, and (3) parallel implementations of all ITS codes. Moreover the general user friendliness of the software has been enhanced through increased internal error checking and improved code portability.

  11. Robust and accurate transient light transport decomposition via convolutional sparse coding.

    PubMed

    Hu, Xuemei; Deng, Yue; Lin, Xing; Suo, Jinli; Dai, Qionghai; Barsi, Christopher; Raskar, Ramesh

    2014-06-01

    Ultrafast sources and detectors have been used to record the time-resolved scattering of light propagating through macroscopic scenes. In the context of computational imaging, decomposition of this transient light transport (TLT) is useful for applications, such as characterizing materials, imaging through diffuser layers, and relighting scenes dynamically. Here, we demonstrate a method of convolutional sparse coding to decompose TLT into direct reflections, inter-reflections, and subsurface scattering. The method relies on the sparsity composition of the time-resolved kernel. We show that it is robust and accurate to noise during the acquisition process.

  12. New Capabilities in Mercury: A Modern, Monte Carlo Particle Transport Code

    SciTech Connect

    Procassini, R J; Cullen, D E; Greenman, G M; Hagmann, C A; Kramer, K J; McKinley, M S; O'Brien, M J; Taylor, J M

    2007-03-08

    The new physics, algorithmic and computer science capabilities of the Mercury general-purpose Monte Carlo particle transport code are discussed. The new physics and algorithmic features include in-line energy deposition and isotopic depletion, significant enhancements to the tally and source capabilities, diagnostic ray-traced particles, support for multi-region hybrid (mesh and combinatorial geometry) systems, and a probability of initiation method. Computer science enhancements include a second method of dynamically load-balancing parallel calculations, improved methods for visualizing 3-D combinatorial geometries and initial implementation of an in-line visualization capabilities.

  13. Polarization correction for ionization loss in a galactic cosmic ray transport code (HZETRN)

    NASA Technical Reports Server (NTRS)

    Shinn, Judy L.; Farhat, Hamidullah; Badavi, Francis F.; Wilson, John W.

    1993-01-01

    An approximate polarization correction for ionization loss suggested by Sternheimer has been implemented in the galactic cosmic ray transport code (HZETRN) developed at the Langley Research Center. Sample calculations made for the aluminum shield and liquid hydrogen shield show no more than a plus or minus 2 percent change in the linear energy transfer (LET) distribution for flux compared with those without polarization correction. This very small change is expected because the effect of polarization correction on the reduction in stopping power of ions with energies above 2 GeV/amu is suppressed by the decrease in galactic cosmic ray ion flux at such high energies.

  14. Implementation, capabilities, and benchmarking of Shift, a massively parallel Monte Carlo radiation transport code

    DOE PAGES

    Pandya, Tara M.; Johnson, Seth R.; Evans, Thomas M.; Davidson, Gregory G.; Hamilton, Steven P.; Godfrey, Andrew T.

    2015-12-21

    This paper discusses the implementation, capabilities, and validation of Shift, a massively parallel Monte Carlo radiation transport package developed and maintained at Oak Ridge National Laboratory. It has been developed to scale well from laptop to small computing clusters to advanced supercomputers. Special features of Shift include hybrid capabilities for variance reduction such as CADIS and FW-CADIS, and advanced parallel decomposition and tally methods optimized for scalability on supercomputing architectures. Shift has been validated and verified against various reactor physics benchmarks and compares well to other state-of-the-art Monte Carlo radiation transport codes such as MCNP5, CE KENO-VI, and OpenMC. Somemore » specific benchmarks used for verification and validation include the CASL VERA criticality test suite and several Westinghouse AP1000® problems. These benchmark and scaling studies show promising results.« less

  15. Implementation, capabilities, and benchmarking of Shift, a massively parallel Monte Carlo radiation transport code

    SciTech Connect

    Pandya, Tara M.; Johnson, Seth R.; Evans, Thomas M.; Davidson, Gregory G.; Hamilton, Steven P.; Godfrey, Andrew T.

    2015-12-21

    This paper discusses the implementation, capabilities, and validation of Shift, a massively parallel Monte Carlo radiation transport package developed and maintained at Oak Ridge National Laboratory. It has been developed to scale well from laptop to small computing clusters to advanced supercomputers. Special features of Shift include hybrid capabilities for variance reduction such as CADIS and FW-CADIS, and advanced parallel decomposition and tally methods optimized for scalability on supercomputing architectures. Shift has been validated and verified against various reactor physics benchmarks and compares well to other state-of-the-art Monte Carlo radiation transport codes such as MCNP5, CE KENO-VI, and OpenMC. Some specific benchmarks used for verification and validation include the CASL VERA criticality test suite and several Westinghouse AP1000® problems. These benchmark and scaling studies show promising results.

  16. Operator-splitting errors in coupled reactive transport codes for flow and transport under atmospheric boundary conditions or layered soil profiles

    Technology Transfer Automated Retrieval System (TEKTRAN)

    One possible way of integrating subsurface flow and transport processes with (bio)geochemical reactions is to couple by means of an operator-splitting approach two completely separate codes, one for variably-saturated flow and solute transport and one for equilibrium and kinetic biogeochemical react...

  17. Understanding transport simulations of heavy-ion collisions at 100 A and 400 A MeV: Comparison of heavy-ion transport codes under controlled conditions

    NASA Astrophysics Data System (ADS)

    Xu, Jun; Chen, Lie-Wen; Tsang, ManYee Betty; Wolter, Hermann; Zhang, Ying-Xun; Aichelin, Joerg; Colonna, Maria; Cozma, Dan; Danielewicz, Pawel; Feng, Zhao-Qing; Le Fèvre, Arnaud; Gaitanos, Theodoros; Hartnack, Christoph; Kim, Kyungil; Kim, Youngman; Ko, Che-Ming; Li, Bao-An; Li, Qing-Feng; Li, Zhu-Xia; Napolitani, Paolo; Ono, Akira; Papa, Massimo; Song, Taesoo; Su, Jun; Tian, Jun-Long; Wang, Ning; Wang, Yong-Jia; Weil, Janus; Xie, Wen-Jie; Zhang, Feng-Shou; Zhang, Guo-Qiang

    2016-04-01

    Transport simulations are very valuable for extracting physics information from heavy-ion-collision experiments. With the emergence of many different transport codes in recent years, it becomes important to estimate their robustness in extracting physics information from experiments. We report on the results of a transport-code-comparison project. Eighteen commonly used transport codes were included in this comparison: nine Boltzmann-Uehling-Uhlenbeck-type codes and nine quantum-molecular-dynamics-type codes. These codes have been asked to simulate Au +Au collisions using the same physics input for mean fields and for in-medium nucleon-nucleon cross sections, as well as the same impact parameter, the similar initialization setup, and other calculational parameters at 100 A and 400 A MeV incident energy. Among the codes we compare one-body observables such as rapidity and transverse flow distributions. We also monitor nonobservables such as the initialization of the internal states of colliding nuclei and their stability, the collision rates, and the Pauli blocking. We find that not completely identical initializations may have contributed partly to different evolutions. Different strategies to determine the collision probabilities and to enforce the Pauli blocking also produce considerably different results. There is a substantial spread in the predictions for the observables, which is much smaller at the higher incident energy. We quantify the uncertainties in the collective flow resulting from the simulation alone as about 30% at 100 A MeV and 13% at 400 A MeV, respectively. We propose further steps within the code comparison project to test the different aspects of transport simulations in a box calculation of infinite nuclear matter. This should, in particular, improve the robustness of transport model predictions at lower incident energies, where abundant amounts of data are available.

  18. 76 FR 2744 - Disclosure of Code-Share Service by Air Carriers and Sellers of Air Transportation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-01-14

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF TRANSPORTATION... agents must inform the consumer of the code-share service ``before booking transportation'' and state... global distribution systems, which may be assisting travel agents to establish airline ticket sales...

  19. The TORT three-dimensional discrete ordinates neutron/photon transport code (TORT version 3)

    SciTech Connect

    Rhoades, W.A.; Simpson, D.B.

    1997-10-01

    TORT calculates the flux or fluence of neutrons and/or photons throughout three-dimensional systems due to particles incident upon the system`s external boundaries, due to fixed internal sources, or due to sources generated by interaction with the system materials. The transport process is represented by the Boltzman transport equation. The method of discrete ordinates is used to treat the directional variable, and a multigroup formulation treats the energy dependence. Anisotropic scattering is treated using a Legendre expansion. Various methods are used to treat spatial dependence, including nodal and characteristic procedures that have been especially adapted to resist numerical distortion. A method of body overlay assists in material zone specification, or the specification can be generated by an external code supplied by the user. Several special features are designed to concentrate machine resources where they are most needed. The directional quadrature and Legendre expansion can vary with energy group. A discontinuous mesh capability has been shown to reduce the size of large problems by a factor of roughly three in some cases. The emphasis in this code is a robust, adaptable application of time-tested methods, together with a few well-tested extensions.

  20. Simulation for the Production of Technetium-99m Using Monte Carlo N-Particle Transport Code

    NASA Astrophysics Data System (ADS)

    Kaita, Courtney; Gentile, Charles; Zelenty, Jennifer

    2010-11-01

    The Monte Carlo N-Particle Transport Code (MCNP) is employed to simulate the radioisotope production process that leads to the creation of Technetium-99m (Tc-99m). Tc-99m is a common metastable nuclear isomer used in nuclear medicine tests and is produced from the gamma decay of Molybdenum-99 (Mo-99). Mo-99 is commonly produced from the fission of Uranium-235, a complicated process which is only performed at a limited number of facilities. Due to the age of these facilities, coupled with the critical importance of a steady flow of Mo-99, new methods of generating Mo-99 are being investigated. Current experiments demonstrate promising alternatives, one of which consists of the neutron activation of Molybdenum-98 (Mo-98), a naturally occurring element found in nature. Mo-98 has a small cross section (.13 barns), so investigations are also aimed at overcoming this natural obstacle for producing Tc-99m. The neutron activated Mo-98 becomes Mo-99 and subsequently decays into radioactive Tc-99m. The MCNP code is being used to examine the interactions between the particles in each of these situations, thus determining a theoretical threshold to maximize the reaction's efficiency. The simulation results will be applied to ongoing experiments at the PPPL, where the empirical data will be compared to predictions from the MCNP code.

  1. Coupled Neutron-Photon, 3-D, Combinatorial Geometry, Time Dependent, Monte Carlo Transport Code System.

    2013-06-24

    Version 07 TART2012 is a coupled neutron-photon Monte Carlo transport code designed to use three-dimensional (3-D) combinatorial geometry. Neutron and/or photon sources as well as neutron induced photon production can be tracked. It is a complete system to assist you with input preparation, running Monte Carlo calculations, and analysis of output results. TART2012 is also incredibly FAST; if you have used similar codes, you will be amazed at how fast this code is compared tomore » other similar codes. Use of the entire system can save you a great deal of time and energy. TART2012 extends the general utility of the code to even more areas of application than available in previous releases by concentrating on improving the physics, particularly with regard to improved treatment of neutron fission, resonance self-shielding, molecular binding, and extending input options used by the code. Several utilities are included for creating input files and displaying TART results and data. TART2012 uses the latest ENDF/B-VI, Release 8, data. New for TART2012 is the use of continuous energy neutron cross sections, in addition to its traditional multigroup cross sections. For neutron interaction, the data are derived using ENDF-ENDL2005 and include both continuous energy cross sections and 700 group neutron data derived using a combination of ENDF/B-VI, Release 8, and ENDL data. The 700 group structure extends from 10-5 eV up to 1 GeV. Presently nuclear data are only available up to 20 MeV, so that only 616 of the groups are currently used. For photon interaction, 701 point photon data were derived using the Livermore EPDL97 file. The new 701 point structure extends from 100 eV up to 1 GeV, and is currently used over this entire energy range. TART2012 completely supersedes all older versions of TART, and it is strongly recommended that one use only the most recent version of TART2012 and its data files. Check author’s homepage for related information: http

  2. PyMercury: Interactive Python for the Mercury Monte Carlo Particle Transport Code

    SciTech Connect

    Iandola, F N; O'Brien, M J; Procassini, R J

    2010-11-29

    Monte Carlo particle transport applications are often written in low-level languages (C/C++) for optimal performance on clusters and supercomputers. However, this development approach often sacrifices straightforward usability and testing in the interest of fast application performance. To improve usability, some high-performance computing applications employ mixed-language programming with high-level and low-level languages. In this study, we consider the benefits of incorporating an interactive Python interface into a Monte Carlo application. With PyMercury, a new Python extension to the Mercury general-purpose Monte Carlo particle transport code, we improve application usability without diminishing performance. In two case studies, we illustrate how PyMercury improves usability and simplifies testing and validation in a Monte Carlo application. In short, PyMercury demonstrates the value of interactive Python for Monte Carlo particle transport applications. In the future, we expect interactive Python to play an increasingly significant role in Monte Carlo usage and testing.

  3. Guidelines for selecting codes for ground-water transport modeling of low-level waste burial sites. Executive summary

    SciTech Connect

    Simmons, C.S.; Cole, C.R.

    1985-05-01

    This document was written to provide guidance to managers and site operators on how ground-water transport codes should be selected for assessing burial site performance. There is a need for a formal approach to selecting appropriate codes from the multitude of potentially useful ground-water transport codes that are currently available. Code selection is a problem that requires more than merely considering mathematical equation-solving methods. These guidelines are very general and flexible and are also meant for developing systems simulation models to be used to assess the environmental safety of low-level waste burial facilities. Code selection is only a single aspect of the overall objective of developing a systems simulation model for a burial site. The guidance given here is mainly directed toward applications-oriented users, but managers and site operators need to be familiar with this information to direct the development of scientifically credible and defensible transport assessment models. Some specific advice for managers and site operators on how to direct a modeling exercise is based on the following five steps: identify specific questions and study objectives; establish costs and schedules for achieving answers; enlist the aid of professional model applications group; decide on approach with applications group and guide code selection; and facilitate the availability of site-specific data. These five steps for managers/site operators are discussed in detail following an explanation of the nine systems model development steps, which are presented first to clarify what code selection entails.

  4. Application of the INSTANT-HPS PN Transport Code to the C5G7 Benchmark Problem

    SciTech Connect

    Y. Wang; H. Zhang; R. H. Szilard; R. C. Martineau

    2011-06-01

    INSTANT is the INL's next generation neutron transport solver to support high-fidelity multi-physics reactor simulation INSTANT is in continuous development to extend its capability Code is designed to take full advantage of middle to large cluster (10-1000 processors) Code is designed to focus on method adaptation while also mesh adaptation will be possible. It utilizes the most modern computing techniques to generate a neutronics tool of full-core transport calculations for reactor analysis and design. It can perform calculations on unstructured 2D/3D triangular, hexagonal and Cartesian geometries. Calculations can be easily extended to more geometries because of the independent mesh framework coded with the model Fortran. This code has a multigroup solver with thermal rebalance and Chebyshev acceleration. It employs second-order PN and Hybrid Finite Element method (PNHFEM) discretization scheme. Three different in-group solvers - preconditioned Conjugate Gradient (CG) method, preconditioned Generalized Minimal Residual Method (GMRES) and Red-Black iteration - have been implemented and parallelized with the spatial domain decomposition in the code. The input is managed with extensible markup language (XML) format. 3D variables including the flux distributions are outputted into VTK files, which can be visualized by tools such as VisIt and ParaView. An extension of the code named INSTANTHPS provides the capability to perform 3D heterogeneous transport calculations within fuel pins. C5G7 is an OECD/NEA benchmark problem created to test the ability of modern deterministic transport methods and codes to treat reactor core problems without spatial homogenization. This benchmark problem had been widely analyzed with various code packages. In this transaction, results of the applying the INSTANT-HPS code to the C5G7 problem are summarized.

  5. Steady-State Gyrokinetics Transport Code (SSGKT), A Scientific Application Partnership with the Framework Application for Core-Edge Transport Simulations, Final Report

    SciTech Connect

    Fahey, Mark R.; Candy, Jeff

    2013-11-07

    This project initiated the development of TGYRO ? a steady-state Gyrokinetic transport code (SSGKT) that integrates micro-scale GYRO turbulence simulations into a framework for practical multi-scale simulation of conventional tokamaks as well as future reactors. Using a lightweight master transport code, multiple independent (each massively parallel) gyrokinetic simulations are coordinated. The capability to evolve profiles using the TGLF model was also added to TGYRO and represents a more typical use-case for TGYRO. The goal of the project was to develop a steady-state Gyrokinetic transport code (SSGKT) that integrates micro-scale gyrokinetic turbulence simulations into a framework for practical multi-scale simulation of a burning plasma core ? the International Thermonuclear Experimental Reactor (ITER) in particular. This multi-scale simulation capability will be used to predict the performance (the fusion energy gain, Q) given the H-mode pedestal temperature and density. At present, projections of this type rely on transport models like GLF23, which are based on rather approximate fits to the results of linear and nonlinear simulations. Our goal is to make these performance projections with precise nonlinear gyrokinetic simulations. The method of approach is to use a lightweight master transport code to coordinate multiple independent (each massively parallel) gyrokinetic simulations using the GYRO code. This project targets the practical multi-scale simulation of a reactor core plasma in order to predict the core temperature and density profiles given the H-mode pedestal temperature and density. A master transport code will provide feedback to O(16) independent gyrokinetic simulations (each massively parallel). A successful feedback scheme offers a novel approach to predictive modeling of an important national and international problem. Success in this area of fusion simulations will allow US scientists to direct the research path of ITER over the next two

  6. Multi-fluid transport code modeling of time-dependent recycling in ELMy H-mode

    SciTech Connect

    Pigarov, A. Yu.; Krasheninnikov, S. I.; Rognlien, T. D.; Hollmann, E. M.; Lasnier, C. J.; Unterberg, Ezekial A

    2014-01-01

    Simulations of a high-confinement-mode (H-mode) tokamak discharge with infrequent giant type-I ELMs are performed by the multi-fluid, multi-species, two-dimensional transport code UEDGE-MB, which incorporates the Macro-Blob approach for intermittent non-diffusive transport due to filamentary coherent structures observed during the Edge Localized Modes (ELMs) and simple time-dependent multi-parametric models for cross-field plasma transport coefficients and working gas inventory in material surfaces. Temporal evolutions of pedestal plasma profiles, divertor recycling, and wall inventory in a sequence of ELMs are studied and compared to the experimental time-dependent data. Short- and long-time-scale variations of the pedestal and divertor plasmas where the ELM is described as a sequence of macro-blobs are discussed. It is shown that the ELM recovery includes the phase of relatively dense and cold post-ELM divertor plasma evolving on a several ms scale, which is set by the transport properties of H-mode barrier. The global gas balance in the discharge is also analyzed. The calculated rates of working gas deposition during each ELM and wall outgassing between ELMs are compared to the ELM particle losses from the pedestal and neutral-beam-injection fueling rate, correspondingly. A sensitivity study of the pedestal and divertor plasmas to model assumptions for gas deposition and release on material surfaces is presented. The performed simulations show that the dynamics of pedestal particle inventory is dominated by the transient intense gas deposition into the wall during each ELM followed by continuous gas release between ELMs at roughly a constant rate.

  7. Multi-fluid transport code modeling of time-dependent recycling in ELMy H-mode

    SciTech Connect

    Pigarov, A. Yu.; Krasheninnikov, S. I.; Hollmann, E. M.; Rognlien, T. D.; Lasnier, C. J.; Unterberg, E.

    2014-06-15

    Simulations of a high-confinement-mode (H-mode) tokamak discharge with infrequent giant type-I ELMs are performed by the multi-fluid, multi-species, two-dimensional transport code UEDGE-MB, which incorporates the Macro-Blob approach for intermittent non-diffusive transport due to filamentary coherent structures observed during the Edge Localized Modes (ELMs) and simple time-dependent multi-parametric models for cross-field plasma transport coefficients and working gas inventory in material surfaces. Temporal evolutions of pedestal plasma profiles, divertor recycling, and wall inventory in a sequence of ELMs are studied and compared to the experimental time-dependent data. Short- and long-time-scale variations of the pedestal and divertor plasmas where the ELM is described as a sequence of macro-blobs are discussed. It is shown that the ELM recovery includes the phase of relatively dense and cold post-ELM divertor plasma evolving on a several ms scale, which is set by the transport properties of H-mode barrier. The global gas balance in the discharge is also analyzed. The calculated rates of working gas deposition during each ELM and wall outgassing between ELMs are compared to the ELM particle losses from the pedestal and neutral-beam-injection fueling rate, correspondingly. A sensitivity study of the pedestal and divertor plasmas to model assumptions for gas deposition and release on material surfaces is presented. The performed simulations show that the dynamics of pedestal particle inventory is dominated by the transient intense gas deposition into the wall during each ELM followed by continuous gas release between ELMs at roughly a constant rate.

  8. Computer codes for the evaluation of thermodynamic and transport properties for equilibrium air to 30000 K

    NASA Technical Reports Server (NTRS)

    Thompson, Richard A.; Lee, Kam-Pui; Gupta, Roop N.

    1991-01-01

    The computer codes developed here provide self-consistent thermodynamic and transport properties for equilibrium air for temperatures from 500 to 30000 K over a temperature range of 10 (exp -4) to 10 (exp -2) atm. These properties are computed through the use of temperature dependent curve fits for discrete values of pressure. Interpolation is employed for intermediate values of pressure. The curve fits are based on mixture values calculated from an 11-species air model. Individual species properties used in the mixture relations are obtained from a recent study by the present authors. A review and discussion of the sources and accuracy of the curve fitted data used herein are given in NASA RP 1260.

  9. Development and validation of a GEANT4 radiation transport code for CT dosimetry.

    PubMed

    Carver, D E; Kost, S D; Fernald, M J; Lewis, K G; Fraser, N D; Pickens, D R; Price, R R; Stabin, M G

    2015-04-01

    The authors have created a radiation transport code using the GEANT4 Monte Carlo toolkit to simulate pediatric patients undergoing CT examinations. The focus of this paper is to validate their simulation with real-world physical dosimetry measurements using two independent techniques. Exposure measurements were made with a standard 100-mm CT pencil ionization chamber, and absorbed doses were also measured using optically stimulated luminescent (OSL) dosimeters. Measurements were made in air with a standard 16-cm acrylic head phantom and with a standard 32-cm acrylic body phantom. Physical dose measurements determined from the ionization chamber in air for 100 and 120 kVp beam energies were used to derive photon-fluence calibration factors. Both ion chamber and OSL measurement results provide useful comparisons in the validation of the Monte Carlo simulations. It was found that simulated and measured CTDI values were within an overall average of 6% of each other. PMID:25706135

  10. Space applications of the MITS electron-photon Monte Carlo transport code system

    SciTech Connect

    Kensek, R.P.; Lorence, L.J.; Halbleib, J.A.; Morel, J.E.

    1996-07-01

    The MITS multigroup/continuous-energy electron-photon Monte Carlo transport code system has matured to the point that it is capable of addressing more realistic three-dimensional adjoint applications. It is first employed to efficiently predict point doses as a function of source energy for simple three-dimensional experimental geometries exposed to simulated uniform isotropic planar sources of monoenergetic electrons up to 4.0 MeV. Results are in very good agreement with experimental data. It is then used to efficiently simulate dose to a detector in a subsystem of a GPS satellite due to its natural electron environment, employing a relatively complex model of the satellite. The capability for survivability analysis of space systems is demonstrated, and results are obtained with and without variance reduction.

  11. Applications of Transport/Reaction Codes to Problems in Cell Modeling

    SciTech Connect

    MEANS, SHAWN A.; RINTOUL, MARK DANIEL; SHADID, JOHN N.

    2001-11-01

    We demonstrate two specific examples that show how our exiting capabilities in solving large systems of partial differential equations associated with transport/reaction systems can be easily applied to outstanding problems in computational biology. First, we examine a three-dimensional model for calcium wave propagation in a Xenopus Laevis frog egg and verify that a proposed model for the distribution of calcium release sites agrees with experimental results as a function of both space and time. Next, we create a model of the neuron's terminus based on experimental observations and show that the sodium-calcium exchanger is not the route of sodium's modulation of neurotransmitter release. These state-of-the-art simulations were performed on massively parallel platforms and required almost no modification of existing Sandia codes.

  12. An object-oriented implementation of a parallel Monte Carlo code for radiation transport

    NASA Astrophysics Data System (ADS)

    Santos, Pedro Duarte; Lani, Andrea

    2016-05-01

    This paper describes the main features of a state-of-the-art Monte Carlo solver for radiation transport which has been implemented within COOLFluiD, a world-class open source object-oriented platform for scientific simulations. The Monte Carlo code makes use of efficient ray tracing algorithms (for 2D, axisymmetric and 3D arbitrary unstructured meshes) which are described in detail. The solver accuracy is first verified in testcases for which analytical solutions are available, then validated for a space re-entry flight experiment (i.e. FIRE II) for which comparisons against both experiments and reference numerical solutions are provided. Through the flexible design of the physical models, ray tracing and parallelization strategy (fully reusing the mesh decomposition inherited by the fluid simulator), the implementation was made efficient and reusable.

  13. Development and validation of a GEANT4 radiation transport code for CT dosimetry

    PubMed Central

    Carver, DE; Kost, SD; Fernald, MJ; Lewis, KG; Fraser, ND; Pickens, DR; Price, RR; Stabin, MG

    2014-01-01

    We have created a radiation transport code using the GEANT4 Monte Carlo toolkit to simulate pediatric patients undergoing CT examinations. The focus of this paper is to validate our simulation with real-world physical dosimetry measurements using two independent techniques. Exposure measurements were made with a standard 100-mm CT pencil ionization chamber, and absorbed doses were also measured using optically stimulated luminescent (OSL) dosimeters. Measurements were made in air, a standard 16-cm acrylic head phantom, and a standard 32-cm acrylic body phantom. Physical dose measurements determined from the ionization chamber in air for 100 and 120 kVp beam energies were used to derive photon-fluence calibration factors. Both ion chamber and OSL measurement results provide useful comparisons in the validation of our Monte Carlo simulations. We found that simulated and measured CTDI values were within an overall average of 6% of each other. PMID:25706135

  14. Implementation, capabilities, and benchmarking of Shift, a massively parallel Monte Carlo radiation transport code

    NASA Astrophysics Data System (ADS)

    Pandya, Tara M.; Johnson, Seth R.; Evans, Thomas M.; Davidson, Gregory G.; Hamilton, Steven P.; Godfrey, Andrew T.

    2016-03-01

    This work discusses the implementation, capabilities, and validation of Shift, a massively parallel Monte Carlo radiation transport package authored at Oak Ridge National Laboratory. Shift has been developed to scale well from laptops to small computing clusters to advanced supercomputers and includes features such as support for multiple geometry and physics engines, hybrid capabilities for variance reduction methods such as the Consistent Adjoint-Driven Importance Sampling methodology, advanced parallel decompositions, and tally methods optimized for scalability on supercomputing architectures. The scaling studies presented in this paper demonstrate good weak and strong scaling behavior for the implemented algorithms. Shift has also been validated and verified against various reactor physics benchmarks, including the Consortium for Advanced Simulation of Light Water Reactors' Virtual Environment for Reactor Analysis criticality test suite and several Westinghouse AP1000® problems presented in this paper. These benchmark results compare well to those from other contemporary Monte Carlo codes such as MCNP5 and KENO.

  15. Multitasking the three-dimensional transport code TORT on CRAY platforms

    SciTech Connect

    Azmy, Y.Y.; Barnett, D.A.; Burre, C.A.

    1996-04-01

    The multitasking options in the three-dimensional neutral particle transport code TORT originally implemented for Cray`s CTSS operating system are revived and extended to run on Cray Y/MP and C90 computers using the UNICOS operating system. These include two coarse-grained domain decompositions; across octants, and across directions within an octant, termed Octant Parallel (OP), and Direction Parallel (DP), respectively. Parallel performance of the DP is significantly enhanced by increasing the task grain size and reducing load imbalance via dynamic scheduling of the discrete angles among the participating tasks. Substantial Wall Clock speedup factors, approaching 4.5 using 8 tasks, have been measured in a time-sharing environment, and generally depend on the test problem specifications, number of tasks, and machine loading during execution.

  16. A Complex-Geometry Validation Experiment for Advanced Neutron Transport Codes

    SciTech Connect

    David W. Nigg; Anthony W. LaPorta; Joseph W. Nielsen; James Parry; Mark D. DeHart; Samuel E. Bays; William F. Skerjanc

    2013-11-01

    The Idaho National Laboratory (INL) has initiated a focused effort to upgrade legacy computational reactor physics software tools and protocols used for support of core fuel management and experiment management in the Advanced Test Reactor (ATR) and its companion critical facility (ATRC) at the INL.. This will be accomplished through the introduction of modern high-fidelity computational software and protocols, with appropriate new Verification and Validation (V&V) protocols, over the next 12-18 months. Stochastic and deterministic transport theory based reactor physics codes and nuclear data packages that support this effort include MCNP5[1], SCALE/KENO6[2], HELIOS[3], SCALE/NEWT[2], and ATTILA[4]. Furthermore, a capability for sensitivity analysis and uncertainty quantification based on the TSUNAMI[5] system has also been implemented. Finally, we are also evaluating the Serpent[6] and MC21[7] codes, as additional verification tools in the near term as well as for possible applications to full three-dimensional Monte Carlo based fuel management modeling in the longer term. On the experimental side, several new benchmark-quality code validation measurements based on neutron activation spectrometry have been conducted using the ATRC. Results for the first four experiments, focused on neutron spectrum measurements within the Northwest Large In-Pile Tube (NW LIPT) and in the core fuel elements surrounding the NW LIPT and the diametrically opposite Southeast IPT have been reported [8,9]. A fifth, very recent, experiment focused on detailed measurements of the element-to-element core power distribution is summarized here and examples of the use of the measured data for validation of corresponding MCNP5, HELIOS, NEWT, and Serpent computational models using modern least-square adjustment methods are provided.

  17. Spallation neutron production and the current intra-nuclear cascade and transport codes

    NASA Astrophysics Data System (ADS)

    Filges, D.; Goldenbaum, F.; Enke, M.; Galin, J.; Herbach, C.-M.; Hilscher, D.; Jahnke, U.; Letourneau, A.; Lott, B.; Neef, R.-D.; Nünighoff, K.; Paul, N.; Péghaire, A.; Pienkowski, L.; Schaal, H.; Schröder, U.; Sterzenbach, G.; Tietze, A.; Tishchenko, V.; Toke, J.; Wohlmuther, M.

    A recent renascent interest in energetic proton-induced production of neutrons originates largely from the inception of projects for target stations of intense spallation neutron sources, like the planned European Spallation Source (ESS), accelerator-driven nuclear reactors, nuclear waste transmutation, and also from the application for radioactive beams. In the framework of such a neutron production, of major importance is the search for ways for the most efficient conversion of the primary beam energy into neutron production. Although the issue has been quite successfully addressed experimentally by varying the incident proton energy for various target materials and by covering a huge collection of different target geometries --providing an exhaustive matrix of benchmark data-- the ultimate challenge is to increase the predictive power of transport codes currently on the market. To scrutinize these codes, calculations of reaction cross-sections, hadronic interaction lengths, average neutron multiplicities, neutron multiplicity and energy distributions, and the development of hadronic showers are confronted with recent experimental data of the NESSI collaboration. Program packages like HERMES, LCS or MCNPX master the prevision of reaction cross-sections, hadronic interaction lengths, averaged neutron multiplicities and neutron multiplicity distributions in thick and thin targets for a wide spectrum of incident proton energies, geometrical shapes and materials of the target generally within less than 10% deviation, while production cross-section measurements for light charged particles on thin targets point out that appreciable distinctions exist within these models.

  18. EBQ code: transport of space-charge beams in axially symmetric devices

    SciTech Connect

    Paul, A.C.

    1982-11-01

    Such general-purpose space charge codes as EGUN, BATES, WOLF, and TRANSPORT do not gracefully accommodate the simulation of relativistic space-charged beams propagating a long distance in axially symmetric devices where a high degree of cancellation has occurred between the self-magnetic and self-electric forces of the beam. The EBQ code was written specifically to follow high current beam particles where space charge is important in long distance flight in axially symmetric machines possessing external electric and magnetic field. EBQ simultaneously tracks all trajectories so as to allow procedures for charge deposition based on inter-ray separations. The orbits are treated in Cartesian geometry (position and momentum) with z as the independent variable. Poisson's equation is solved in cylindrical geometry on an orthogonal rectangular mesh. EBQ can also handle problems involving multiple ion species where the space charge from each must be included. Such problems arise in the design of ion sources where different charge and mass states are present.

  19. Comparison of Radiation Transport Codes, HZETRN, HETC and FLUKA, Using the 1956 Webber SPE Spectrum

    NASA Technical Reports Server (NTRS)

    Heinbockel, John H.; Slaba, Tony C.; Blattnig, Steve R.; Tripathi, Ram K.; Townsend, Lawrence W.; Handler, Thomas; Gabriel, Tony A.; Pinsky, Lawrence S.; Reddell, Brandon; Clowdsley, Martha S.; Singleterry, Robert C.; Norbury, John W.; Badavi, Francis F.; Aghara, Sukesh K.

    2009-01-01

    Protection of astronauts and instrumentation from galactic cosmic rays (GCR) and solar particle events (SPE) in the harsh environment of space is of prime importance in the design of personal shielding, spacec raft, and mission planning. Early entry of radiation constraints into the design process enables optimal shielding strategies, but demands efficient and accurate tools that can be used by design engineers in every phase of an evolving space project. The radiation transport code , HZETRN, is an efficient tool for analyzing the shielding effectiveness of materials exposed to space radiation. In this paper, HZETRN is compared to the Monte Carlo codes HETC-HEDS and FLUKA, for a shield/target configuration comprised of a 20 g/sq cm Aluminum slab in front of a 30 g/cm^2 slab of water exposed to the February 1956 SPE, as mode led by the Webber spectrum. Neutron and proton fluence spectra, as well as dose and dose equivalent values, are compared at various depths in the water target. This study shows that there are many regions where HZETRN agrees with both HETC-HEDS and FLUKA for this shield/target configuration and the SPE environment. However, there are also regions where there are appreciable differences between the three computer c odes.

  20. A pre- and post-processor for the ICOOL muon transport code

    SciTech Connect

    Fawley, W.M.

    2001-05-30

    ICOOL[1] is a Fortran77 macroparticle transport code widely used by researchers to study the front end of a neutrino factory/muon collider[2]. In part due to the desire that ICOOL be usable over multiple computer platforms and operating systems, the code uses simple text files for input/output services. This choice together with user-driven requests for greater and greater choice of lattice element type and configuration has led to ICOOL input decks becoming rather difficult to compose and modify easily. Moreover, the lack of a standard graphical post-processor has prevented many ICOOL users from extracting all but the most simple results from the output files. Here I present two attempts to improve this situation: First, a simple but quite general graphical pre-processor (NIME) written in the Tcl/TK[3] to permit users to write and maintain ASCII-formatted input files by use of simple macro definitions and expansions. Second, an interactive post-processor written in Fortran90 and NCAR graphics, which allows users to define, extract, and then examine the behavior of various particle subsets. In this paper I show some examples of use of both the pre- and post-processor for a standard ICOOL run.

  1. Edge Transport Modeling using the 3D EMC3-Eirene code on Tokamaks and Stellarators

    NASA Astrophysics Data System (ADS)

    Lore, J. D.; Ahn, J. W.; Briesemeister, A.; Ferraro, N.; Labombard, B.; McLean, A.; Reinke, M.; Shafer, M.; Terry, J.

    2015-11-01

    The fluid plasma edge transport code EMC3-Eirene has been applied to aid data interpretation and understanding the results of experiments with 3D effects on several tokamaks. These include applied and intrinsic 3D magnetic fields, 3D plasma facing components, and toroidally and poloidally localized heat and particle sources. On Alcator C-Mod, a series of experiments explored the impact of toroidally and poloidally localized impurity gas injection on core confinement and asymmetries in the divertor fluxes, with the differences between the asymmetry in L-mode and H-mode qualitatively reproduced in the simulations due to changes in the impurity ionization in the private flux region. Modeling of NSTX experiments on the effect of 3D fields on detachment matched the trend of a higher density at which the detachment occurs when 3D fields are applied. On DIII-D, different magnetic field models were used in the simulation and compared against the 2D Thomson scattering diagnostic. In simulating each device different aspects of the code model are tested pointing to areas where the model must be further developed. The application to stellarator experiments will also be discussed. Work supported by U.S. DOE: DE-AC05-00OR22725, DE AC02-09CH11466, DE-FC02-99ER54512, and DE-FC02-04ER54698.

  2. Development of Parallel Computing Framework to Enhance Radiation Transport Code Capabilities for Rare Isotope Beam Facility Design

    SciTech Connect

    Kostin, Mikhail; Mokhov, Nikolai; Niita, Koji

    2013-09-25

    A parallel computing framework has been developed to use with general-purpose radiation transport codes. The framework was implemented as a C++ module that uses MPI for message passing. It is intended to be used with older radiation transport codes implemented in Fortran77, Fortran 90 or C. The module is significantly independent of radiation transport codes it can be used with, and is connected to the codes by means of a number of interface functions. The framework was developed and tested in conjunction with the MARS15 code. It is possible to use it with other codes such as PHITS, FLUKA and MCNP after certain adjustments. Besides the parallel computing functionality, the framework offers a checkpoint facility that allows restarting calculations with a saved checkpoint file. The checkpoint facility can be used in single process calculations as well as in the parallel regime. The framework corrects some of the known problems with the scheduling and load balancing found in the original implementations of the parallel computing functionality in MARS15 and PHITS. The framework can be used efficiently on homogeneous systems and networks of workstations, where the interference from the other users is possible.

  3. C5 Benchmark Problem with Discrete Ordinate Radiation Transport Code DENOVO

    SciTech Connect

    Yesilyurt, Gokhan; Clarno, Kevin T; Evans, Thomas M; Davidson, Gregory G; Fox, Patricia B

    2011-01-01

    The C5 benchmark problem proposed by the Organisation for Economic Co-operation and Development/Nuclear Energy Agency was modeled to examine the capabilities of Denovo, a three-dimensional (3-D) parallel discrete ordinates (S{sub N}) radiation transport code, for problems with no spatial homogenization. Denovo uses state-of-the-art numerical methods to obtain accurate solutions to the Boltzmann transport equation. Problems were run in parallel on Jaguar, a high-performance supercomputer located at Oak Ridge National Laboratory. Both the two-dimensional (2-D) and 3-D configurations were analyzed, and the results were compared with the reference MCNP Monte Carlo calculations. For an additional comparison, SCALE/KENO-V.a Monte Carlo solutions were also included. In addition, a sensitivity analysis was performed for the optimal angular quadrature and mesh resolution for both the 2-D and 3-D infinite lattices of UO{sub 2} fuel pin cells. Denovo was verified with the C5 problem. The effective multiplication factors, pin powers, and assembly powers were found to be in good agreement with the reference MCNP and SCALE/KENO-V.a Monte Carlo calculations.

  4. Generic reactive transport codes as flexible tools to integrate soil organic matter degradation models with water, transport and geochemistry in soils

    NASA Astrophysics Data System (ADS)

    Jacques, Diederik; Gérard, Fréderic; Mayer, Uli; Simunek, Jirka; Leterme, Bertrand

    2016-04-01

    A large number of organic matter degradation, CO2 transport and dissolved organic matter models have been developed during the last decades. However, organic matter degradation models are in many cases strictly hard-coded in terms of organic pools, degradation kinetics and dependency on environmental variables. The scientific input of the model user is typically limited to the adjustment of input parameters. In addition, the coupling with geochemical soil processes including aqueous speciation, pH-dependent sorption and colloid-facilitated transport are not incorporated in many of these models, strongly limiting the scope of their application. Furthermore, the most comprehensive organic matter degradation models are combined with simplified representations of flow and transport processes in the soil system. We illustrate the capability of generic reactive transport codes to overcome these shortcomings. The formulations of reactive transport codes include a physics-based continuum representation of flow and transport processes, while biogeochemical reactions can be described as equilibrium processes constrained by thermodynamic principles and/or kinetic reaction networks. The flexibility of these type of codes allows for straight-forward extension of reaction networks, permits the inclusion of new model components (e.g.: organic matter pools, rate equations, parameter dependency on environmental conditions) and in such a way facilitates an application-tailored implementation of organic matter degradation models and related processes. A numerical benchmark involving two reactive transport codes (HPx and MIN3P) demonstrates how the process-based simulation of transient variably saturated water flow (Richards equation), solute transport (advection-dispersion equation), heat transfer and diffusion in the gas phase can be combined with a flexible implementation of a soil organic matter degradation model. The benchmark includes the production of leachable organic matter

  5. PHITS-2.76, Particle and Heavy Ion Transport code System

    SciTech Connect

    2015-08-01

    Version 03 PHITS can deal with the transport of almost all particles (nucleons, nuclei, mesons, photons, and electrons) over wide energy ranges, using several nuclear reaction models and nuclear data libraries. Geometrical configuration of the simulation can be set with GG (General Geometry) or CG (Combinatorial Geometry). Various quantities such as heat deposition, track length and production yields can be deduced from the simulation, using implemented estimator functions called "tally". The code also has a function to draw 2D and 3D figures of the calculated results as well as the setup geometries, using a code ANGEL. The physical processes included in PHITS can be divided into two categories, transport process and collision process. In the transport process, PHITS can simulate motion of particles under external fields such as magnetic and gravity. Without the external fields, neutral particles move along a straight trajectory with constant energy up to the next collision point. However, charge particles interact many times with electrons in the material losing energy and changing direction. PHITS treats ionization processes not as collision but as a transport process, using the continuous-slowing-down approximation. The average stopping power is given by the charge density of the material and the momentum of the particle taking into account the fluctuations of the energy loss and the angular deviation. In the collision process, PHITS can simulate the elastic and inelastic interactions as well as decay of particles. The total reaction cross section, or the life time of the particle is an essential quantity in the determination of the mean free path of the transport particle. According to the mean free path, PHITS chooses the next collision point using the Monte Carlo method. To generate the secondary particles of the collision, we need the information of the final states of the collision. For neutron induced reactions in low energy region, PHITS employs the cross

  6. PHITS-2.76, Particle and Heavy Ion Transport code System

    2015-08-01

    Version 03 PHITS can deal with the transport of almost all particles (nucleons, nuclei, mesons, photons, and electrons) over wide energy ranges, using several nuclear reaction models and nuclear data libraries. Geometrical configuration of the simulation can be set with GG (General Geometry) or CG (Combinatorial Geometry). Various quantities such as heat deposition, track length and production yields can be deduced from the simulation, using implemented estimator functions called "tally". The code also has amore » function to draw 2D and 3D figures of the calculated results as well as the setup geometries, using a code ANGEL. The physical processes included in PHITS can be divided into two categories, transport process and collision process. In the transport process, PHITS can simulate motion of particles under external fields such as magnetic and gravity. Without the external fields, neutral particles move along a straight trajectory with constant energy up to the next collision point. However, charge particles interact many times with electrons in the material losing energy and changing direction. PHITS treats ionization processes not as collision but as a transport process, using the continuous-slowing-down approximation. The average stopping power is given by the charge density of the material and the momentum of the particle taking into account the fluctuations of the energy loss and the angular deviation. In the collision process, PHITS can simulate the elastic and inelastic interactions as well as decay of particles. The total reaction cross section, or the life time of the particle is an essential quantity in the determination of the mean free path of the transport particle. According to the mean free path, PHITS chooses the next collision point using the Monte Carlo method. To generate the secondary particles of the collision, we need the information of the final states of the collision. For neutron induced reactions in low energy region, PHITS employs

  7. An Extension of the Athena++ Code Framework for GRMHD Based on Advanced Riemann Solvers and Staggered-mesh Constrained Transport

    NASA Astrophysics Data System (ADS)

    White, Christopher J.; Stone, James M.; Gammie, Charles F.

    2016-08-01

    We present a new general relativistic magnetohydrodynamics (GRMHD) code integrated into the Athena++ framework. Improving upon the techniques used in most GRMHD codes, ours allows the use of advanced, less diffusive Riemann solvers, in particular HLLC and HLLD. We also employ a staggered-mesh constrained transport algorithm suited for curvilinear coordinate systems in order to maintain the divergence-free constraint of the magnetic field. Our code is designed to work with arbitrary stationary spacetimes in one, two, or three dimensions, and we demonstrate its reliability through a number of tests. We also report on its promising performance and scalability.

  8. Recent Progress in the Development of a Multi-Layer Green's Function Code for Ion Beam Transport

    NASA Technical Reports Server (NTRS)

    Tweed, John; Walker, Steven A.; Wilson, John W.; Tripathi, Ram K.

    2008-01-01

    To meet the challenge of future deep space programs, an accurate and efficient engineering code for analyzing the shielding requirements against high-energy galactic heavy radiation is needed. To address this need, a new Green's function code capable of simulating high charge and energy ions with either laboratory or space boundary conditions is currently under development. The computational model consists of combinations of physical perturbation expansions based on the scales of atomic interaction, multiple scattering, and nuclear reactive processes with use of the Neumann-asymptotic expansions with non-perturbative corrections. The code contains energy loss due to straggling, nuclear attenuation, nuclear fragmentation with energy dispersion and downshifts. Previous reports show that the new code accurately models the transport of ion beams through a single slab of material. Current research efforts are focused on enabling the code to handle multiple layers of material and the present paper reports on progress made towards that end.

  9. The Candida albicans CDR3 gene codes for an opaque-phase ABC transporter.

    PubMed Central

    Balan, I; Alarco, A M; Raymond, M

    1997-01-01

    We report the cloning and functional analysis of a third member of the CDR gene family in Candida albicans, named CDR3. This gene codes for an ABC (ATP-binding cassette) transporter of 1,501 amino acids highly homologous to Cdr1p and Cdr2p (56 and 55% amino acid sequence identity, respectively), two transporters involved in fluconazole resistance in C. albicans. The predicted structure of Cdr3p is typical of the PDR/CDR family, with two similar halves, each comprising an N-terminal hydrophilic domain with consensus sequences for ATP binding and a C-terminal hydrophobic domain with six predicted transmembrane segments. Northern analysis showed that CDR3 expression is regulated in a cell-type-specific manner, with low levels of CDR3 mRNA in CAI4 yeast and hyphal cells, high levels in WO-1 opaque cells, and undetectable levels in WO-1 white cells. Disruption of both alleles of CDR3 in CAI4 resulted in no obvious changes in cell morphology, growth rate, or susceptibility to fluconazole. Overexpression of Cdr3p in C. albicans did not result in increased cellular resistance to fluconazole, cycloheximide, and 4-nitroquinoline-N-oxide, which are known substrates for different transporters of the PDR/CDR family. These results indicate that despite a high degree of sequence conservation with C. albicans Cdr1p and Cdr2p, Cdr3p does not appear to be involved in drug resistance, at least to the compounds tested which include the clinically relevant antifungal agent fluconazole. Rather, the high level of Cdr3p expression in WO-1 opaque cells suggests an opaque-phase-associated biological function which remains to be identified. PMID:9393682

  10. Generation of discrete scattering cross sections and demonstration of Monte Carlo charged particle transport in the Milagro IMC code package

    SciTech Connect

    Walsh, J. A.; Palmer, T. S.; Urbatsch, T. J.

    2013-07-01

    A new method for generating discrete scattering cross sections to be used in charged particle transport calculations is investigated. The method of data generation is presented and compared to current methods for obtaining discrete cross sections. The new, more generalized approach allows greater flexibility in choosing a cross section model from which to derive discrete values. Cross section data generated with the new method is verified through a comparison with discrete data obtained with an existing method. Additionally, a charged particle transport capability is demonstrated in the time-dependent Implicit Monte Carlo radiative transfer code package, Milagro. The implementation of this capability is verified using test problems with analytic solutions as well as a comparison of electron dose-depth profiles calculated with Milagro and an already-established electron transport code. An initial investigation of a preliminary integration of the discrete cross section generation method with the new charged particle transport capability in Milagro is also presented. (authors)

  11. Radiation transport codes for potential applications related to radiobiology and radiotherapy using protons, neutrons, and negatively charged pions

    NASA Technical Reports Server (NTRS)

    Armstrong, T. W.

    1972-01-01

    Several Monte Carlo radiation transport computer codes are used to predict quantities of interest in the fields of radiotherapy and radiobiology. The calculational methods are described and comparisions of calculated and experimental results are presented for dose distributions produced by protons, neutrons, and negatively charged pions. Comparisons of calculated and experimental cell survival probabilities are also presented.

  12. Developing Sediment Transport and Dredging Prediction Model of Ohio River at Olmsted Locks and Dams Area using HEC-RAS (1D/2D)By Ganesh Raj Ghimire1 and Bruce A. Devantier 2

    NASA Astrophysics Data System (ADS)

    Ghimire, G. R.

    2015-12-01

    Sediment deposition is a serious issue in the construction and operation of large reservoir and inland navigation projects in the United States and around the world. Olmsted Locks and Dams in the Ohio River navigation system is facing similar challenges of huge sediment deposition during the ongoing in-wet construction methodology since 1993. HEC-RAS 5.0 integrated with ArcGIS, will be used to yield unsteady 2D hydrodynamic model of Ohio River at Olmsted area. Velocity, suspended sediment, bed sediment and hydrographic survey data acquired from public archives of USGS and USACE Louisville District will be input into the model. Calibration and validation of model will be performed against the measured stage, flow and velocity data. It will be subjected to completely unsteady 1D sediment transport modeling new to HEC-RAS 5.0 which incorporates sediment load and bed gradation via a DSS file, commercial dredging and BSTEM model. Sediment model will be calibrated to replicate the historical bed volume changes. Excavated cross-sections at Olmsted area will also be used to predict the sediment volume trapped inside the ditch over the period between excavations and placement of dam shells at site. Model will attempt to replicate historical dredging volume data and compare with the deposition volume from simulation model to formulate the dredging prediction model. Hence, the results of this research will generate a model that can form a basis for scheduling the dredging event prior to the placement of off-shore cast shells replacing the current as and when required approach of dredging plan. 1 Graduate Student, Department of Civil Engineering, Southern Illinois University Carbondale Carbondale, Illinois, 62901-6603 2 Professor, Department of Civil Engineering, Southern Illinois University Carbondale Carbondale, Illinois, 62901-6603

  13. Experiences in the Performance Analysis and Optimization of a Deterministic Radiation Transport Code on the Cray SV1

    SciTech Connect

    Peter Cebull

    2004-05-01

    The Attila radiation transport code, which solves the Boltzmann neutron transport equation on three-dimensional unstructured tetrahedral meshes, was ported to a Cray SV1. Cray's performance analysis tools pointed to two subroutines that together accounted for 80%-90% of the total CPU time. Source code modifications were performed to enable vectorization of the most significant loops, to correct unfavorable strides through memory, and to replace a conjugate gradient solver subroutine with a call to the Cray Scientific Library. These optimizations resulted in a speedup of 7.79 for the INEEL's largest ATR model. Parallel scalability of the OpenMP version of the code is also discussed, and timing results are given for other non-vector platforms.

  14. Functional Coding Variation in Recombinant Inbred Mouse Lines Reveals Novel Serotonin Transporter-Associated Phenotypes

    SciTech Connect

    Carneiro, Ana; Airey, David; Thompson, Brent; Zhu, C; Rinchik, Eugene M; Lu, Lu; Chesler, Elissa J; Erikson, Keith; Blakely, Randy

    2009-01-01

    The human serotonin (5-hydroxytryptamine, 5-HT) transporter (hSERT, SLC6A4) figures prominently in the etiology or treatment of many prevalent neurobehavioral disorders including anxiety, alcoholism, depression, autism and obsessive-compulsive disorder (OCD). Here we utilize naturally occurring polymorphisms in recombinant inbred (RI) lines to identify novel phenotypes associated with altered SERT function. The widely used mouse strain C57BL/6J, harbors a SERT haplotype defined by two nonsynonymous coding variants (Gly39 and Lys152 (GK)). At these positions, many other mouse lines, including DBA/2J, encode Glu39 and Arg152 (ER haplotype), assignments found also in hSERT. Synaptosomal 5-HT transport studies revealed reduced uptake associated with the GK variant. Heterologous expression studies confirmed a reduced SERT turnover rate for the GK variant. Experimental and in silico approaches using RI lines (C57Bl/6J X DBA/2J=BXD) identifies multiple anatomical, biochemical and behavioral phenotypes specifically impacted by GK/ER variation. Among our findings are multiple traits associated with anxiety and alcohol consumption, as well as of the control of dopamine (DA) signaling. Further bioinformatic analysis of BXD phenotypes, combined with biochemical evaluation of SERT knockout mice, nominates SERT-dependent 5-HT signaling as a major determinant of midbrain iron homeostasis that, in turn, dictates ironregulated DA phenotypes. Our studies provide a novel example of the power of coordinated in vitro, in vivo and in silico approaches using murine RI lines to elucidate and quantify the system-level impact of gene variation.

  15. Code System for Monte Carlo Simulation of Electron and Photon Transport.

    2015-07-01

    Version 01 PENELOPE performs Monte Carlo simulation of coupled electron-photon transport in arbitrary materials and complex quadric geometries. A mixed procedure is used for the simulation of electron and positron interactions (elastic scattering, inelastic scattering and bremsstrahlung emission), in which ‘hard’ events (i.e. those with deflection angle and/or energy loss larger than pre-selected cutoffs) are simulated in a detailed way, while ‘soft’ interactions are calculated from multiple scattering approaches. Photon interactions (Rayleigh scattering, Compton scattering,more » photoelectric effect and electron-positron pair production) and positron annihilation are simulated in a detailed way. PENELOPE reads the required physical information about each material (which includes tables of physical properties, interaction cross sections, relaxation data, etc.) from the input material data file. The material data file is created by means of the auxiliary program MATERIAL, which extracts atomic interaction data from the database of ASCII files. PENELOPE mailing list archives and additional information about the code can be found at http://www.nea.fr/lists/penelope.html. See Abstract for additional features.« less

  16. A massively parallel method of characteristic neutral particle transport code for GPUs

    SciTech Connect

    Boyd, W. R.; Smith, K.; Forget, B.

    2013-07-01

    Over the past 20 years, parallel computing has enabled computers to grow ever larger and more powerful while scientific applications have advanced in sophistication and resolution. This trend is being challenged, however, as the power consumption for conventional parallel computing architectures has risen to unsustainable levels and memory limitations have come to dominate compute performance. Heterogeneous computing platforms, such as Graphics Processing Units (GPUs), are an increasingly popular paradigm for solving these issues. This paper explores the applicability of GPUs for deterministic neutron transport. A 2D method of characteristics (MOC) code - OpenMOC - has been developed with solvers for both shared memory multi-core platforms as well as GPUs. The multi-threading and memory locality methodologies for the GPU solver are presented. Performance results for the 2D C5G7 benchmark demonstrate 25-35 x speedup for MOC on the GPU. The lessons learned from this case study will provide the basis for further exploration of MOC on GPUs as well as design decisions for hardware vendors exploring technologies for the next generation of machines for scientific computing. (authors)

  17. Code System for Monte Carlo Simulation of Electron and Photon Transport.

    SciTech Connect

    2015-07-01

    Version 01 PENELOPE performs Monte Carlo simulation of coupled electron-photon transport in arbitrary materials and complex quadric geometries. A mixed procedure is used for the simulation of electron and positron interactions (elastic scattering, inelastic scattering and bremsstrahlung emission), in which ‘hard’ events (i.e. those with deflection angle and/or energy loss larger than pre-selected cutoffs) are simulated in a detailed way, while ‘soft’ interactions are calculated from multiple scattering approaches. Photon interactions (Rayleigh scattering, Compton scattering, photoelectric effect and electron-positron pair production) and positron annihilation are simulated in a detailed way. PENELOPE reads the required physical information about each material (which includes tables of physical properties, interaction cross sections, relaxation data, etc.) from the input material data file. The material data file is created by means of the auxiliary program MATERIAL, which extracts atomic interaction data from the database of ASCII files. PENELOPE mailing list archives and additional information about the code can be found at http://www.nea.fr/lists/penelope.html. See Abstract for additional features.

  18. Verification experiment of the three-dimensional Oak Ridge transport code (TORT)

    SciTech Connect

    Muckenthaler, F. J.; Holland, L. B.; Hull, J. L.; Manning, J. J.

    1985-12-01

    An experiment was conducted at the Oak Ridge National Laboratory Tower Shielding Facility during FY 1984-85 to provide verification of a discrete ordinates Three-Dimensional Oak Ridge Transport computer code (TORT), which is being developed at ORNL for calculating the neutron and gamma-ray fluxes within concrete structures that were exposed to radiation at Hiroshima and Nagasaki. In the experiment a collimated beam of radiation from the Tower Shielding Reactor II, modified to represent the spectra of neutrons and gamma rays emitted in weapons bursts, impinged on a concrete structure simulating a small, simple, single-story concrete block house. Variations in the structure were introduced during the experiment by successive changes in the outer wall and within the building: several blocks in the front wall were removed to form a window; a concrete support pillar within the building was relocated; and a central concrete wall was added to divide the single room into two rooms of approximately the same dimensions. Integral neutron fluxes and gamma-ray energy depositions were measured both in the modified reactor beam and at selected locations inside each structure. This report describes the experiment and presents the detailed results in both tabular and graphical form. It also discusses the impact of the variations in the basic configuration on the measured results.

  19. SIMULATING MAGNETOHYDRODYNAMICAL FLOW WITH CONSTRAINED TRANSPORT AND ADAPTIVE MESH REFINEMENT: ALGORITHMS AND TESTS OF THE AstroBEAR CODE

    SciTech Connect

    Cunningham, Andrew J.; Frank, Adam; Varniere, Peggy; Mitran, Sorin; Jones, Thomas W.

    2009-06-15

    A description is given of the algorithms implemented in the AstroBEAR adaptive mesh-refinement code for ideal magnetohydrodynamics. The code provides several high-resolution shock-capturing schemes which are constructed to maintain conserved quantities of the flow in a finite-volume sense. Divergence-free magnetic field topologies are maintained to machine precision by collating the components of the magnetic field on a cell-interface staggered grid and utilizing the constrained transport approach for integrating the induction equations. The maintenance of magnetic field topologies on adaptive grids is achieved using prolongation and restriction operators which preserve the divergence and curl of the magnetic field across collocated grids of different resolutions. The robustness and correctness of the code is demonstrated by comparing the numerical solution of various tests with analytical solutions or previously published numerical solutions obtained by other codes.

  20. Development of one-dimensional computational fluid dynamics code 'GFLOW' for groundwater flow and contaminant transport analysis

    SciTech Connect

    Rahatgaonkar, P. S.; Datta, D.; Malhotra, P. K.; Ghadge, S. G.

    2012-07-01

    Prediction of groundwater movement and contaminant transport in soil is an important problem in many branches of science and engineering. This includes groundwater hydrology, environmental engineering, soil science, agricultural engineering and also nuclear engineering. Specifically, in nuclear engineering it is applicable in the design of spent fuel storage pools and waste management sites in the nuclear power plants. Ground water modeling involves the simulation of flow and contaminant transport by groundwater flow. In the context of contaminated soil and groundwater system, numerical simulations are typically used to demonstrate compliance with regulatory standard. A one-dimensional Computational Fluid Dynamics code GFLOW had been developed based on the Finite Difference Method for simulating groundwater flow and contaminant transport through saturated and unsaturated soil. The code is validated with the analytical model and the benchmarking cases available in the literature. (authors)

  1. Update On the Status of the FLUKA Monte Carlo Transport Code*

    NASA Technical Reports Server (NTRS)

    Ferrari, A.; Lorenzo-Sentis, M.; Roesler, S.; Smirnov, G.; Sommerer, F.; Theis, C.; Vlachoudis, V.; Carboni, M.; Mostacci, A.; Pelliccioni, M.

    2006-01-01

    The FLUKA Monte Carlo transport code is a well-known simulation tool in High Energy Physics. FLUKA is a dynamic tool in the sense that it is being continually updated and improved by the authors. We review the progress achieved since the last CHEP Conference on the physics models, some technical improvements to the code and some recent applications. From the point of view of the physics, improvements have been made with the extension of PEANUT to higher energies for p, n, pi, pbar/nbar and for nbars down to the lowest energies, the addition of the online capability to evolve radioactive products and get subsequent dose rates, upgrading of the treatment of EM interactions with the elimination of the need to separately prepare preprocessed files. A new coherent photon scattering model, an updated treatment of the photo-electric effect, an improved pair production model, new photon cross sections from the LLNL Cullen database have been implemented. In the field of nucleus-- nucleus interactions the electromagnetic dissociation of heavy ions has been added along with the extension of the interaction models for some nuclide pairs to energies below 100 MeV/A using the BME approach, as well as the development of an improved QMD model for intermediate energies. Both DPMJET 2.53 and 3 remain available along with rQMD 2.4 for heavy ion interactions above 100 MeV/A. Technical improvements include the ability to use parentheses in setting up the combinatorial geometry, the introduction of pre-processor directives in the input stream. a new random number generator with full 64 bit randomness, new routines for mathematical special functions (adapted from SLATEC). Finally, work is progressing on the deployment of a user-friendly GUI input interface as well as a CAD-like geometry creation and visualization tool. On the application front, FLUKA has been used to extensively evaluate the potential space radiation effects on astronauts for future deep space missions, the activation

  2. Suite of Benchmark Tests to Conduct Mesh-Convergence Analysis of Nonlinear and Non-constant Coefficient Transport Codes

    NASA Astrophysics Data System (ADS)

    Zamani, K.; Bombardelli, F. A.

    2014-12-01

    Verification of geophysics codes is imperative to avoid serious academic as well as practical consequences. In case that access to any given source code is not possible, the Method of Manufactured Solution (MMS) cannot be employed in code verification. In contrast, employing the Method of Exact Solution (MES) has several practical advantages. In this research, we first provide four new one-dimensional analytical solutions designed for code verification; these solutions are able to uncover the particular imperfections of the Advection-diffusion-reaction equation, such as nonlinear advection, diffusion or source terms, as well as non-constant coefficient equations. After that, we provide a solution of Burgers' equation in a novel setup. Proposed solutions satisfy the continuity of mass for the ambient flow, which is a crucial factor for coupled hydrodynamics-transport solvers. Then, we use the derived analytical solutions for code verification. To clarify gray-literature issues in the verification of transport codes, we designed a comprehensive test suite to uncover any imperfection in transport solvers via a hierarchical increase in the level of tests' complexity. The test suite includes hundreds of unit tests and system tests to check vis-a-vis the portions of the code. Examples for checking the suite start by testing a simple case of unidirectional advection; then, bidirectional advection and tidal flow and build up to nonlinear cases. We design tests to check nonlinearity in velocity, dispersivity and reactions. The concealing effect of scales (Peclet and Damkohler numbers) on the mesh-convergence study and appropriate remedies are also discussed. For the cases in which the appropriate benchmarks for mesh convergence study are not available, we utilize symmetry. Auxiliary subroutines for automation of the test suite and report generation are designed. All in all, the test package is not only a robust tool for code verification but it also provides comprehensive

  3. COBRA-SFS: A thermal-hydraulic analysis code for spent fuel storage and transportation casks

    SciTech Connect

    Michener, T.E.; Rector, D.R.; Cuta, J.M.; Dodge, R.E.; Enderlin, C.W.

    1995-09-01

    COBRA-SFS is a general thermal-hydraulic analysis computer code for prediction of material temperatures and fluid conditions in a wide variety of systems. The code has been validated for analysis of spent fuel storage systems, as part of the Commercial Spent Fuel Management Program of the US Department of Energy. The code solves finite volume equations representing the conservation equations for mass, moment, and energy for an incompressible single-phase heat transfer fluid. The fluid solution is coupled to a finite volume solution of the conduction equation in the solid structure of the system. This document presents a complete description of Cycle 2 of COBRA-SFS, and consists of three main parts. Part 1 describes the conservation equations, constitutive models, and solution methods used in the code. Part 2 presents the User Manual, with guidance on code applications, and complete input instructions. This part also includes a detailed description of the auxiliary code RADGEN, used to generate grey body view factors required as input for radiative heat transfer modeling in the code. Part 3 describes the code structure, platform dependent coding, and program hierarchy. Installation instructions are also given for the various platform versions of the code that are available.

  4. Antiproton annihilation physics in the Monte Carlo particle transport code SHIELD-HIT12A

    NASA Astrophysics Data System (ADS)

    Taasti, Vicki Trier; Knudsen, Helge; Holzscheiter, Michael H.; Sobolevsky, Nikolai; Thomsen, Bjarne; Bassler, Niels

    2015-03-01

    The Monte Carlo particle transport code SHIELD-HIT12A is designed to simulate therapeutic beams for cancer radiotherapy with fast ions. SHIELD-HIT12A allows creation of antiproton beam kernels for the treatment planning system TRiP98, but first it must be benchmarked against experimental data. An experimental depth dose curve obtained by the AD-4/ACE collaboration was compared with an earlier version of SHIELD-HIT, but since then inelastic annihilation cross sections for antiprotons have been updated and a more detailed geometric model of the AD-4/ACE experiment was applied. Furthermore, the Fermi-Teller Z-law, which is implemented by default in SHIELD-HIT12A has been shown not to be a good approximation for the capture probability of negative projectiles by nuclei. We investigate other theories which have been developed, and give a better agreement with experimental findings. The consequence of these updates is tested by comparing simulated data with the antiproton depth dose curve in water. It is found that the implementation of these new capture probabilities results in an overestimation of the depth dose curve in the Bragg peak. This can be mitigated by scaling the antiproton collision cross sections, which restores the agreement, but some small deviations still remain. Best agreement is achieved by using the most recent antiproton collision cross sections and the Fermi-Teller Z-law, even if experimental data conclude that the Z-law is inadequately describing annihilation on compounds. We conclude that more experimental cross section data are needed in the lower energy range in order to resolve this contradiction, ideally combined with more rigorous models for annihilation on compounds.

  5. Update on the Status of the FLUKA Monte Carlo Transport Code

    NASA Technical Reports Server (NTRS)

    Pinsky, L.; Anderson, V.; Empl, A.; Lee, K.; Smirnov, G.; Zapp, N; Ferrari, A.; Tsoulou, K.; Roesler, S.; Vlachoudis, V.; Battisoni, G.; Ceruti, F.; Gadioli, M. V.; Garzelli, M.; Muraro, S.; Rancati, T.; Sala, P.; Ballarini, R.; Ottolenghi, A.; Parini, V.; Scannicchio, D.; Pelliccioni, M.; Wilson, T. L.

    2004-01-01

    The FLUKA Monte Carlo transport code is a well-known simulation tool in High Energy Physics. FLUKA is a dynamic tool in the sense that it is being continually updated and improved by the authors. Here we review the progresses achieved in the last year on the physics models. From the point of view of hadronic physics, most of the effort is still in the field of nucleus--nucleus interactions. The currently available version of FLUKA already includes the internal capability to simulate inelastic nuclear interactions beginning with lab kinetic energies of 100 MeV/A up the the highest accessible energies by means of the DPMJET-II.5 event generator to handle the interactions for greater than 5 GeV/A and rQMD for energies below that. The new developments concern, at high energy, the embedding of the DPMJET-III generator, which represent a major change with respect to the DPMJET-II structure. This will also allow to achieve a better consistency between the nucleus-nucleus section with the original FLUKA model for hadron-nucleus collisions. Work is also in progress to implement a third event generator model based on the Master Boltzmann Equation approach, in order to extend the energy capability from 100 MeV/A down to the threshold for these reactions. In addition to these extended physics capabilities, structural changes to the programs input and scoring capabilities are continually being upgraded. In particular we want to mention the upgrades in the geometry packages, now capable of reaching higher levels of abstraction. Work is also proceeding to provide direct import into ROOT of the FLUKA output files for analysis and to deploy a user-friendly GUI input interface.

  6. 1D Scaling with Ablation for K-Shell Radiation from Stainless Steel Wire Arrays

    SciTech Connect

    Giuliani, J. L.; Thornhill, J. W.; Dasgupta, A.; Davis, J.; Clark, R. W.; Jones, B.; Cuneo, M.; Coverdale, C. A.; Deeney, C.

    2009-01-21

    A 1D Lagrangian magnetohydrodynamic z-pinch simulation code is extended to include wire ablation. The plasma transport coefficients are calibrated to reproduce the K-shell yields measured on the Z generator for three stainless steel arrays of diameter 55 mm and masses ranging from 1.8 to 2.7 mg. The resulting 1D scaling model is applied to a larger SS array (65 mm and 2.5 mg) on the refurbished Z machine. Simulation results predict a maximum K-shell yield of 77 kJ for an 82 kV charging voltage. This maximum drops to 42 kJ at 75 kV charging. Neglecting the ablation precursor leads to a {approx}10% change in the calculated yield.

  7. Human serotonin 1D receptor is encoded by a subfamily of two distinct genes: 5-HT1D alpha and 5-HT1D beta.

    PubMed Central

    Weinshank, R L; Zgombick, J M; Macchi, M J; Branchek, T A; Hartig, P R

    1992-01-01

    The serotonin 1D (5-HT1D) receptor is a pharmacologically defined binding site and functional receptor site. Observed variations in the properties of 5-HT1D receptors in different tissues have led to the speculation that multiple receptor proteins with slightly different properties may exist. We report here the cloning, deduced amino acid sequences, pharmacological properties, and second-messenger coupling of a pair of human 5-HT1D receptor genes, which we have designated 5-HT1D alpha and 5-HT1D beta due to their strong similarities in sequence, pharmacological properties, and second-messenger coupling. Both genes are free of introns in their coding regions, are expressed in the human cerebral cortex, and can couple to inhibition of adenylate cyclase activity. The pharmacological binding properties of these two human receptors are very similar, and match closely the pharmacological properties of human, bovine, and guinea pig 5-HT1D sites. Both receptors exhibit high-affinity binding of sumatriptan, a new anti-migraine medication, and thus are candidates for the pharmacological site of action of this drug. Images PMID:1565658

  8. Two-Dimensional x-y and r-z Geometry Multigroup Transport Code System for Large Toroidal Reactors.

    1980-06-16

    Version: 00 Although TRIDENT-CTR is a follow-on code to TRIDENT, it has incorporated several features that make it significantly different. It can handle a wide range of irregular geometric domains in both x-y and r-z geometries. However, it was principally designed to solve shielding and blanket problems for large toroidal reactors. TRIDENT-CTR is a two-dimensional, x-y and r-z geometry, multigroup, neutral particle transport code. The use of triangular finite elements gives it the geometric flexibilitymore » to cope with the nonorthogonal shapes of many toroidal designs. The code is capable of handling a wide variety of problems having irregular domains in both x-y and r-z geometries.« less

  9. Application of 3-dimensional radiation transport codes to the analysis of the CRBR prototypic coolant pipe chaseway neutron streaming experiment

    SciTech Connect

    Chatani, K. )

    1992-08-01

    This report summarizes the calculational results from analyses of a Clinch River Breeder Reactor (CRBR) prototypic coolant pipe chaseway neutron streaming experiment Comparisons of calculated and measured results are presented, major emphasis being placed on results at bends in the chaseway. Calculations were performed with three three-dimensional radiation transport codes: the discrete ordinates code TORT and the Monte Carlo code MORSE, both developed by the Oak Ridge National Laboratory (ORNL), and the discrete ordinates code ENSEMBLE, developed by Japan. The calculated results from the three codes are compared (1) with previously-calculated DOT3.5 two-dimensional results, (2) among themselves, and (3) with measured results. Calculations with TORT used both the weighted-difference and nodal methods. Only the weighted-difference method was used in ENSEMBLE. When the calculated results were compared to measured results, it was found that calculation-to-experiment (C/E) ratios were good in the regions of the chaseway where two-dimensional modeling might be difficult and where there were no significant discrete ordinates ray effects. Excellent agreement was observed for responses dominated by thermal neutron contributions. MORSE-calculated results and comparisons are described also, and detailed results are presented in an appendix.

  10. GTNEUT: A code for the calculation of neutral particle transport in plasmas based on the Transmission and Escape Probability method

    NASA Astrophysics Data System (ADS)

    Mandrekas, John

    2004-08-01

    GTNEUT is a two-dimensional code for the calculation of the transport of neutral particles in fusion plasmas. It is based on the Transmission and Escape Probabilities (TEP) method and can be considered a computationally efficient alternative to traditional Monte Carlo methods. The code has been benchmarked extensively against Monte Carlo and has been used to model the distribution of neutrals in fusion experiments. Program summaryTitle of program: GTNEUT Catalogue identifier: ADTX Program obtainable from: CPC Program Library, Queen's University of Belfast, N. Ireland Program summary URL:http://cpc.cs.qub.ac.uk/summaries/ADTX Computer for which the program is designed and others on which it has been tested: The program was developed on a SUN Ultra 10 workstation and has been tested on other Unix workstations and PCs. Operating systems or monitors under which the program has been tested: Solaris 8, 9, HP-UX 11i, Linux Red Hat v8.0, Windows NT/2000/XP. Programming language used: Fortran 77 Memory required to execute with typical data: 6 219 388 bytes No. of bits in a word: 32 No. of processors used: 1 Has the code been vectorized or parallelized?: No No. of bytes in distributed program, including test data, etc.: 300 709 No. of lines in distributed program, including test data, etc.: 17 365 Distribution format: compressed tar gzip file Keywords: Neutral transport in plasmas, Escape probability methods Nature of physical problem: This code calculates the transport of neutral particles in thermonuclear plasmas in two-dimensional geometric configurations. Method of solution: The code is based on the Transmission and Escape Probability (TEP) methodology [1], which is part of the family of integral transport methods for neutral particles and neutrons. The resulting linear system of equations is solved by standard direct linear system solvers (sparse and non-sparse versions are included). Restrictions on the complexity of the problem: The current version of the code can

  11. Neutronic analysis of the 1D and 1E banks reflux detection system

    SciTech Connect

    Blanchard, A.

    1999-12-21

    Two H Canyon neutron monitoring systems for early detection of postulated abnormal reflux conditions in the Second Uranium Cycle 1E and 1D Mixer-Settle Banks have been designed and built. Monte Carlo neutron transport simulations using the general purpose, general geometry, n-particle MCNP code have been performed to model expected response of the monitoring systems to varying conditions.The confirmatory studies documented herein conclude that the 1E and 1D neutron monitoring systems are able to achieve adequate neutron count rates for various neutron source and detector configurations, thereby eliminating excessive integration count time. Neutron count rate sensitivity studies are also performed. Conversely, the transport studies concluded that the neutron count rates are statistically insensitive to nitric acid content in the aqueous region and to the transition region length. These studies conclude that the 1E and 1D neutron monitoring systems are able to predict the postulated reflux conditions for all examined perturbations in the neutron source and detector configurations. In the cases examined, the relative change in the neutron count rates due to postulated transitions from normal {sup 235}U concentration levels to reflux levels remain satisfactory detectable.

  12. S3C: EBT Steady-State Shooting code description and user's guide

    SciTech Connect

    Downum, W.B.

    1983-09-01

    The Oak Ridge National Laboratory (ORNL) one-dimensional (1-D) Steady-State Shooting code (S3C) for ELMO Bumpy Torus (EBT) plasmas is described. Benchmark calculations finding the steady-state density and electron and ion temperature profiles for a known neutral density profile and known external energy sources are carried out. Good agreement is obtained with results from the ORNL Radially Resolved Time Dependent 1-D Transport code for an EBT-Q type reactor. The program logic is described, along with the physics models in each code block and the variable names used. Sample input and output files are listed, along with the main code.

  13. Monte Carlo Code System for High-Energy Radiation Transport Calculations.

    2000-02-16

    Version 00 HERMES-KFA consists of a set of Monte Carlo Codes used to simulate particle radiation and interaction with matter. The main codes are HETC, MORSE, and EGS. They are supported by a common geometry package, common random routines, a command interpreter, and auxiliary codes like NDEM that is used to generate a gamma-ray source from nuclear de-excitation after spallation processes. The codes have been modified so that any particle history falling outside the domainmore » of the physical theory of one program can be submitted to another program in the suite to complete the work. Also response data can be submitted by each program, to be collected and combined by a statistic package included within the command interpreter.« less

  14. Multi-fluid code simulations including anomalous non-diffusive transport of plasma and impurities in the tokamak SOL

    SciTech Connect

    Pigarov, A Y; West, W; Soukhanovskii, V; Rognlien, T; Maingi, R; Lipschultz, B; Krasheninnikov, S; LaBombard, B

    2003-11-25

    Fast intermittent transport has been observed in the scrape-off layer (SOL) of major tokamaks including Alcator C-Mod, DIII-D, and NSTX. This kind of transport is not diffusive but rather convective. It strongly increases plasma flux to the chamber walls and enhances the recycling of neutral particles in the main chamber. We discuss anomalous cross-field convection (ACFC) model for impurity and main plasma ions and its relation to intermittent transport events, i.e. plasma density blobs and holes in the SOL. Along with plasma diffusivity coefficients, our transport model introduces time-independent anomalous cross-field convective velocity. In the discharge modelling, diffusivity coefficients and ACFC velocity profiles are adjusted to match a set of representative experimental data. We use this model in the edge plasma physics code UEDGE to simulate the multi-fluid two-dimensional transport for these three tokamaks. We present simulation results suggesting the dominance of anomalous convection in the far SOL transport. These results are consistent with the hypothesis that the chamber wall is an important source of impurities and that different impurity charge states have different directions of anomalous convective velocity.

  15. User Instructions for the Systems Assessment Capability, Rev. 0, Computer Codes Volume 1: Inventory, Release, and Transport Modules

    SciTech Connect

    Eslinger, Paul W. ); Engel, David W. ); Gerhardstein, Lawrence H. ); Lopresti, Charles A. ); Nichols, William E. ); Strenge, Dennis L. )

    2001-12-01

    One activity of the Department of Energy's Groundwater/Vadose Zone Integration Project is an assessment of cumulative impacts from Hanford Site wastes on the subsurface environment and the Columbia River. Through the application of a system assessment capability (SAC), decisions for each cleanup and disposal action will be able to take into account the composite effect of other cleanup and disposal actions. The SAC has developed a suite of computer programs to simulate the migration of contaminants (analytes) present on the Hanford Site and to assess the potential impacts of the analytes, including dose to humans, socio-cultural impacts, economic impacts, and ecological impacts. The general approach to handling uncertainty in the SAC computer codes is a Monte Carlo approach. Conceptually, one generates a value for every stochastic parameter in the code (the entire sequence of modules from inventory through transport and impacts) and then executes the simulation, obtaining an output value, or result. This document provides user instructions for the SAC codes that handle inventory tracking, release of contaminants to the environment, and transport of contaminants through the unsaturated zone, saturated zone, and the Columbia River.

  16. Radioactive Sediment Transport on Ogaki Dam Reservoir in Fukushima Evacuated Zone: Numerical Simulation Studies by 2-D River Simulation Code

    NASA Astrophysics Data System (ADS)

    Yamada, Susumu; Kitamura, Akihiro; Kurikami, Hiroshi; Machida, Masahiko

    2015-04-01

    Fukushima Daiichi Nuclear Power Plant (FDNPP) accident on March 2011 released significant quantities of radionuclides to atmosphere. The most significant nuclide is radioactive cesium isotopes. Therefore, the movement of the cesium is one of the critical issues for the environmental assessment. Since the cesium is strongly sorbed by soil particles, the cesium transport can be regarded as the sediment transport which is mainly brought about by the aquatic system such as a river and a lake. In this research, our target is the sediment transport on Ogaki dam reservoir which is located in about 16 km northwest from FDNPP. The reservoir is one of the principal irrigation dam reservoirs in Fukushima Prefecture and its upstream river basin was heavily contaminated by radioactivity. We simulate the sediment transport on the reservoir using 2-D river simulation code named Nays2D originally developed by Shimizu et al. (The latest version of Nays2D is available as a code included in iRIC (http://i-ric.org/en/), which is a river flow and riverbed variation analysis software package). In general, a 2-D simulation code requires a huge amount of calculation time. Therefore, we parallelize the code and execute it on a parallel computer. We examine the relationship between the behavior of the sediment transport and the height of the reservoir exit. The simulation result shows that almost all the sand that enter into the reservoir deposit close to the entrance of the reservoir for any height of the exit. The amounts of silt depositing within the reservoir slightly increase by raising the height of the exit. However, that of the clay dramatically increases. Especially, more than half of the clay deposits, if the exit is sufficiently high. These results demonstrate that the water level of the reservoir has a strong influence on the amount of the clay discharged from the reservoir. As a result, we conclude that the tuning of the water level has a possibility for controlling the

  17. 77 FR 18716 - Transportation Security Administration Postal Zip Code Change; Technical Amendment

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-03-28

    ... SECURITY Transportation Security Administration 49 CFR Part 1572 Transportation Security Administration... is Sec. 1572.5(e)(2). Technical Amendment This document amends section 1572.5(e)(2) in order to make... to the section. List of Subjects in 49 CFR Part 1572 Appeals, Commercial driver's license,...

  18. Implementation of agronomical and geochemical modules into a 3D groundwater code for assessing nitrate storage and transport through unconfined Chalk aquifer

    NASA Astrophysics Data System (ADS)

    Picot-Colbeaux, Géraldine; Devau, Nicolas; Thiéry, Dominique; Pettenati, Marie; Surdyk, Nicolas; Parmentier, Marc; Amraoui, Nadia; Crastes de Paulet, François; André, Laurent

    2016-04-01

    Chalk aquifer is the main water resource for domestic water supply in many parts in northern France. In same basin, groundwater is frequently affected by quality problems concerning nitrates. Often close to or above the drinking water standards, nitrate concentration in groundwater is mainly due to historical agriculture practices, combined with leakage and aquifer recharge through the vadose zone. The complexity of processes occurring into such an environment leads to take into account a lot of knowledge on agronomy, geochemistry and hydrogeology in order to understand, model and predict the spatiotemporal evolution of nitrate content and provide a decision support tool for the water producers and stakeholders. To succeed in this challenge, conceptual and numerical models representing accurately the Chalk aquifer specificity need to be developed. A multidisciplinary approach is developed to simulate storage and transport from the ground surface until groundwater. This involves a new agronomic module "NITRATE" (NItrogen TRansfer for Arable soil to groundwaTEr), a soil-crop model allowing to calculate nitrogen mass balance in arable soil, and the "PHREEQC" numerical code for geochemical calculations, both coupled with the 3D transient groundwater numerical code "MARTHE". Otherwise, new development achieved on MARTHE code allows the use of dual porosity and permeability calculations needed in the fissured Chalk aquifer context. This method concerning the integration of existing multi-disciplinary tools is a real challenge to reduce the number of parameters by selecting the relevant equations and simplifying the equations without altering the signal. The robustness and the validity of these numerical developments are tested step by step with several simulations constrained by climate forcing, land use and nitrogen inputs over several decades. In the first time, simulations are performed in a 1D vertical unsaturated soil column for representing experimental nitrates

  19. Simulation of chaotic electrokinetic transport: performance of commercial software versus custom-built direct numerical simulation codes.

    PubMed

    Karatay, Elif; Druzgalski, Clara L; Mani, Ali

    2015-05-15

    Many microfluidic and electrochemical applications involve chaotic transport phenomena that arise due to instabilities stemming from coupling of hydrodynamics with ion transport and electrostatic forces. Recent investigations have revealed the contribution of a wide range of spatio-temporal scales in such electro-chaotic systems similar to those observed in turbulent flows. Given that these scales can span several orders of magnitude, significant numerical resolution is needed for accurate prediction of these phenomena. The objective of this work is to assess accuracy and efficiency of commercial software for prediction of such phenomena. We have considered the electroconvective flow induced by concentration polarization near an ion selective surface as a model problem representing chaotic elecrokinetic phenomena. We present detailed comparison of the performance of a general-purpose commercial computational fluid dynamics (CFD) and transport solver against a custom-built direct numerical simulation code that has been tailored to the specific physics of unsteady electrokinetic flows. We present detailed statistics including velocity and ion concentration spectra over a wide range of frequencies as well as time-averaged statistics and computational time required for each simulation. Our results indicate that while accuracy can be guaranteed with proper mesh resolution and avoiding numerical dissipation, commercial solvers are generally at least an order of magnitude slower than custom-built direct numerical simulation codes.

  20. Reactor Dosimetry Applications Using RAPTOR-M3G:. a New Parallel 3-D Radiation Transport Code

    NASA Astrophysics Data System (ADS)

    Longoni, Gianluca; Anderson, Stanwood L.

    2009-08-01

    The numerical solution of the Linearized Boltzmann Equation (LBE) via the Discrete Ordinates method (SN) requires extensive computational resources for large 3-D neutron and gamma transport applications due to the concurrent discretization of the angular, spatial, and energy domains. This paper will discuss the development RAPTOR-M3G (RApid Parallel Transport Of Radiation - Multiple 3D Geometries), a new 3-D parallel radiation transport code, and its application to the calculation of ex-vessel neutron dosimetry responses in the cavity of a commercial 2-loop Pressurized Water Reactor (PWR). RAPTOR-M3G is based domain decomposition algorithms, where the spatial and angular domains are allocated and processed on multi-processor computer architectures. As compared to traditional single-processor applications, this approach reduces the computational load as well as the memory requirement per processor, yielding an efficient solution methodology for large 3-D problems. Measured neutron dosimetry responses in the reactor cavity air gap will be compared to the RAPTOR-M3G predictions. This paper is organized as follows: Section 1 discusses the RAPTOR-M3G methodology; Section 2 describes the 2-loop PWR model and the numerical results obtained. Section 3 addresses the parallel performance of the code, and Section 4 concludes this paper with final remarks and future work.

  1. Verification and Validation: High Charge and Energy (HZE) Transport Codes and Future Development

    NASA Technical Reports Server (NTRS)

    Wilson, John W.; Tripathi, Ram K.; Mertens, Christopher J.; Blattnig, Steve R.; Clowdsley, Martha S.; Cucinotta, Francis A.; Tweed, John; Heinbockel, John H.; Walker, Steven A.; Nealy, John E.

    2005-01-01

    In the present paper, we give the formalism for further developing a fully three-dimensional HZETRN code using marching procedures but also development of a new Green's function code is discussed. The final Green's function code is capable of not only validation in the space environment but also in ground based laboratories with directed beams of ions of specific energy and characterized with detailed diagnostic particle spectrometer devices. Special emphasis is given to verification of the computational procedures and validation of the resultant computational model using laboratory and spaceflight measurements. Due to historical requirements, two parallel development paths for computational model implementation using marching procedures and Green s function techniques are followed. A new version of the HZETRN code capable of simulating HZE ions with either laboratory or space boundary conditions is under development. Validation of computational models at this time is particularly important for President Bush s Initiative to develop infrastructure for human exploration with first target demonstration of the Crew Exploration Vehicle (CEV) in low Earth orbit in 2008.

  2. 2012 Annual Report: Simulate and Evaluate the Cesium Transport and Accumulation in Fukushima-Area Rivers by the TODAM Code

    SciTech Connect

    Onishi, Yasuo; Yokuda, Satoru T.

    2013-03-28

    Pacific Northwest National Laboratory initiated the application of the time-varying, one-dimensional sediment-contaminant transport code, TODAM (Time-dependent, One-dimensional, Degradation, And Migration) to simulate the cesium migration and accumulation in the Ukedo River in Fukushima. This report describes the preliminary TODAM simulation results of the Ukedo River model from the location below the Ougaki Dam to the river mouth at the Pacific Ocean. The major findings of the 100-hour TODAM simulation of the preliminary Ukedo River modeling are summarized as follows:

  3. Computer codes for the evaluation of thermodynamic properties, transport properties, and equilibrium constants of an 11-species air model

    NASA Technical Reports Server (NTRS)

    Thompson, Richard A.; Lee, Kam-Pui; Gupta, Roop N.

    1990-01-01

    The computer codes developed provide data to 30000 K for the thermodynamic and transport properties of individual species and reaction rates for the prominent reactions occurring in an 11-species nonequilibrium air model. These properties and the reaction-rate data are computed through the use of curve-fit relations which are functions of temperature (and number density for the equilibrium constant). The curve fits were made using the most accurate data believed available. A detailed review and discussion of the sources and accuracy of the curve-fitted data used herein are given in NASA RP 1232.

  4. A Monte Carlo neutron transport code for eigenvalue calculations on a dual-GPU system and CUDA environment

    SciTech Connect

    Liu, T.; Ding, A.; Ji, W.; Xu, X. G.; Carothers, C. D.; Brown, F. B.

    2012-07-01

    Monte Carlo (MC) method is able to accurately calculate eigenvalues in reactor analysis. Its lengthy computation time can be reduced by general-purpose computing on Graphics Processing Units (GPU), one of the latest parallel computing techniques under development. The method of porting a regular transport code to GPU is usually very straightforward due to the 'embarrassingly parallel' nature of MC code. However, the situation becomes different for eigenvalue calculation in that it will be performed on a generation-by-generation basis and the thread coordination should be explicitly taken care of. This paper presents our effort to develop such a GPU-based MC code in Compute Unified Device Architecture (CUDA) environment. The code is able to perform eigenvalue calculation under simple geometries on a multi-GPU system. The specifics of algorithm design, including thread organization and memory management were described in detail. The original CPU version of the code was tested on an Intel Xeon X5660 2.8 GHz CPU, and the adapted GPU version was tested on NVIDIA Tesla M2090 GPUs. Double-precision floating point format was used throughout the calculation. The result showed that a speedup of 7.0 and 33.3 were obtained for a bare spherical core and a binary slab system respectively. The speedup factor was further increased by a factor of {approx}2 on a dual GPU system. The upper limit of device-level parallelism was analyzed, and a possible method to enhance the thread-level parallelism was proposed. (authors)

  5. Cosmic ray transport in heliospheric magnetic structures. I. Modeling background solar wind using the CRONOS magnetohydrodynamic code

    SciTech Connect

    Wiengarten, T.; Kleimann, J.; Fichtner, H.; Kühl, P.; Kopp, A.; Heber, B.; Kissmann, R.

    2014-06-10

    The transport of energetic particles such as cosmic rays is governed by the properties of the plasma being traversed. While these properties are rather poorly known for galactic and interstellar plasmas due to the lack of in situ measurements, the heliospheric plasma environment has been probed by spacecraft for decades and provides a unique opportunity for testing transport theories. Of particular interest for the three-dimensional (3D) heliospheric transport of energetic particles are structures such as corotating interaction regions, which, due to strongly enhanced magnetic field strengths, turbulence, and associated shocks, can act as diffusion barriers on the one hand, but also as accelerators of low energy CRs on the other hand as well. In a two-fold series of papers, we investigate these effects by modeling inner-heliospheric solar wind conditions with a numerical magnetohydrodynamic (MHD) setup (this paper), which will serve as an input to a transport code employing a stochastic differential equation approach (second paper). In this first paper, we present results from 3D MHD simulations with our code CRONOS: for validation purposes we use analytic boundary conditions and compare with similar work by Pizzo. For a more realistic modeling of solar wind conditions, boundary conditions derived from synoptic magnetograms via the Wang-Sheeley-Arge (WSA) model are utilized, where the potential field modeling is performed with a finite-difference approach in contrast to the traditional spherical harmonics expansion often utilized in the WSA model. Our results are validated by comparing with multi-spacecraft data for ecliptical (STEREO-A/B) and out-of-ecliptic (Ulysses) regions.

  6. Modeling of impurity spectroscopy in the divertor and SOL of DIII-D using the 1D multifluid model NEWT1D

    SciTech Connect

    West, W.P.; Evans, T.E.; Brooks, N.H.

    1996-10-01

    NEWT1D, a one dimensional multifluid model of the scrape-off layer and divertor plasma, has been used to model the plasma including the distribution of carbon ionization states in the SOL and divertor of ELMing H-mode at two injected power levels in DIII-D. Comparison of the code predictions to the measured divertor and scrape-off layer (SOL) plasma density and temperature shows good agreement. Comparison of the predicted line emissions to the spectroscopic data suggests that physically sputtered carbon from the strike point is not transported up the flux tube; a distributed source of carbon a few centimeters up the flux tube is required to achieve reasonable agreement.

  7. Final Report for ''Client Server Software for the National Transport Code Collaboration''

    SciTech Connect

    John R Cary; David Alexander; Johan Carlsson; Kelly Luetkemeyer; Nathaniel Sizemore

    2004-04-30

    OAK-B135 Tech-X Corporation designed and developed all the networking code tying together the NTCC data server with the data client and the physics server with the data server and physics client. We were also solely responsible for the data and physics clients and the vast majority of the work on the data server. We also performed a number of other tasks.

  8. Voxel2MCNP: a framework for modeling, simulation and evaluation of radiation transport scenarios for Monte Carlo codes.

    PubMed

    Pölz, Stefan; Laubersheimer, Sven; Eberhardt, Jakob S; Harrendorf, Marco A; Keck, Thomas; Benzler, Andreas; Breustedt, Bastian

    2013-08-21

    The basic idea of Voxel2MCNP is to provide a framework supporting users in modeling radiation transport scenarios using voxel phantoms and other geometric models, generating corresponding input for the Monte Carlo code MCNPX, and evaluating simulation output. Applications at Karlsruhe Institute of Technology are primarily whole and partial body counter calibration and calculation of dose conversion coefficients. A new generic data model describing data related to radiation transport, including phantom and detector geometries and their properties, sources, tallies and materials, has been developed. It is modular and generally independent of the targeted Monte Carlo code. The data model has been implemented as an XML-based file format to facilitate data exchange, and integrated with Voxel2MCNP to provide a common interface for modeling, visualization, and evaluation of data. Also, extensions to allow compatibility with several file formats, such as ENSDF for nuclear structure properties and radioactive decay data, SimpleGeo for solid geometry modeling, ImageJ for voxel lattices, and MCNPX's MCTAL for simulation results have been added. The framework is presented and discussed in this paper and example workflows for body counter calibration and calculation of dose conversion coefficients is given to illustrate its application.

  9. Operator-splitting errors in coupled reactive transport codes for transient variably saturated flow and contaminant transport in layered soil profiles.

    PubMed

    Jacques, D; Simůnek, J; Mallants, D; van Genuchten, M Th

    2006-12-15

    One possible way of integrating subsurface flow and transport processes with (bio)geochemical reactions is to couple by means of an operator-splitting approach two completely separate codes, one for variably-saturated flow and solute transport and one for equilibrium and kinetic biogeochemical reactions. This paper evaluates the accuracy of the operator-splitting approach for multicomponent systems for typical soil environmental problems involving transient atmospheric boundary conditions (precipitation, evapotranspiration) and layered soil profiles. The recently developed HP1 code was used to solve the coupled transport and chemical equations. For steady-state flow conditions, the accuracy was found to be mainly a function of the adopted spatial discretization and to a lesser extent of the temporal discretization. For transient flow situations, the accuracy depended in a complex manner on grid discretization, time stepping and the main flow conditions (infiltration versus evaporation). Whereas a finer grid size reduced the numerical errors during steady-state flow or the main infiltration periods, the errors sometimes slightly increased (generally less than 50%) when a finer grid size was used during periods with a high evapotranspiration demand (leading to high pressure head gradients near the soil surface). This indicates that operator-splitting errors are most significant during periods with high evaporative boundary conditions. The operator-splitting errors could be decreased by constraining the time step using the performance index (the product of the grid Peclet and Courant numbers) during infiltration, or the maximum time step during evapotranspiration. Several test problems were used to provide guidance for optimal spatial and temporal discretization. PMID:16919364

  10. General Purpose Monte Carlo Codes for Neutron and Photon Transport Calculations based on Continuous Energy and Multigroup Methods.

    2008-02-29

    Version 00 (1) Problems to be solved: MVP/GMVP II can solve eigenvalue and fixed-source problems. The multigroup code GMVP can solve forward and adjoint problems for neutron, photon and neutron-photon coupled transport. The continuous-energy code MVP can solve only the forward problems. Both codes can also perform time-dependent calculations. (2) Geometry description: MVP/GMVP employs combinatorial geometry to describe the calculation geometry. It describes spatial regions by the combination of the 3-dimensional objects (BODIes). Currently, themore » following objects (BODIes) can be used. - BODIes with linear surfaces : half space, parallelepiped, right parallelepiped, wedge, right hexagonal prism - BODIes with quadratic surface and linear surfaces : cylinder, sphere, truncated right cone, truncated elliptic cone, ellipsoid by rotation, general ellipsoid - Arbitrary quadratic surface and torus The rectangular and hexagonal lattice geometry can be used to describe the repeated geometry. Furthermore, the statistical geometry model is available to treat coated fuel particles or pebbles for high temperature reactors. (3) Particle sources: The various forms of energy-, angle-, space- and time-dependent distribution functions can be specified. See Abstract for more detail.« less

  11. Ack1 is a dopamine transporter endocytic brake that rescues a trafficking-dysregulated ADHD coding variant

    PubMed Central

    Wu, Sijia; Bellve, Karl D.; Fogarty, Kevin E.; Melikian, Haley E.

    2015-01-01

    The dopamine (DA) transporter (DAT) facilitates high-affinity presynaptic DA reuptake that temporally and spatially constrains DA neurotransmission. Aberrant DAT function is implicated in attention-deficit/hyperactivity disorder and autism spectrum disorder. DAT is a major psychostimulant target, and psychostimulant reward strictly requires binding to DAT. DAT function is acutely modulated by dynamic membrane trafficking at the presynaptic terminal and a PKC-sensitive negative endocytic mechanism, or “endocytic brake,” controls DAT plasma membrane stability. However, the molecular basis for the DAT endocytic brake is unknown, and it is unknown whether this braking mechanism is unique to DAT or common to monoamine transporters. Here, we report that the cdc42-activated, nonreceptor tyrosine kinase, Ack1, is a DAT endocytic brake that stabilizes DAT at the plasma membrane and is released in response to PKC activation. Pharmacologic and shRNA-mediated Ack1 silencing enhanced basal DAT internalization and blocked PKC-stimulated DAT internalization, but had no effects on SERT endocytosis. Both cdc42 activation and PKC stimulation converge on Ack1 to control Ack1 activity and DAT endocytic capacity, and Ack1 inactivation is required for stimulated DAT internalization downstream of PKC activation. Moreover, constitutive Ack1 activation is sufficient to rescue the gain-of-function endocytic phenotype exhibited by the ADHD DAT coding variant, R615C. These findings reveal a unique endocytic control switch that is highly specific for DAT. Moreover, the ability to rescue the DAT(R615C) coding variant suggests that manipulating DAT trafficking mechanisms may be a potential therapeutic approach to correct DAT coding variants that exhibit trafficking dysregulation. PMID:26621748

  12. Multigroup Time-Independent Neutron Transport Code System for Plane or Spherical Geometry.

    1986-12-01

    Version 00 PALLAS-PL/SP solves multigroup time-independent one-dimensional neutron transport problems in plane or spherical geometry. The problems solved are subject to a variety of boundary conditions or a distributed source. General anisotropic scattering problems are treated for solving deep-penetration problems in which angle-dependent neutron spectra are calculated in detail.

  13. Assessment and improvement of the 2D/1D method stability in DeCART

    SciTech Connect

    Stimpson, S.; Young, M.; Collins, B.; Kelley, B.; Downar, T.

    2013-07-01

    As part of ongoing work with Consortium for Advanced Simulation of Light Water Reactors (CASL), the 2D/1D code, DeCART, has demonstrated some of the advantages of the 2D/1D method with respect to realistic, full-core analysis, particularly over explicit 3D transport methods, which generally have higher memory and computation requirements. The 2D/1D method performs 2D-radial transport sweeps coupled with ID-axial diffusion calculations to provide a full 3D simulation. DeCART employs the 2D method of characteristics for the radial sweeps and ID one-node nodal diffusion for the axial sweeps, coupling the two methods with transverse leakages to ensure a more consistent representation of the transport equation. It has been observed that refinement of the axial plane thickness leads to instabilities in the calculation scheme. This work assesses the sources of these instabilities and the approaches to improve them, especially with respect to negative scattering cross sections and the tightness of the 2D-radial/ID-axial coupling schemes. Fourier analyses show that the existing iteration scheme is not unconditionally stable, suggesting a tighter coupling scheme is required. For this reason 3D-CMFD has been implemented, among other developments, to ensure more stable calculation. A matrix of test cases has been used to assess the convergence, with the primary parameter being the axial plane thickness, which has been refined down to 1 cm. These cases demonstrate the issues observed and how the modification improve the stability. However, it is apparent that more work is necessary to ensure unconditional stability. (authors)

  14. Development and Implementation of Photonuclear Cross-Section Data for Mutually Coupled Neutron-Photon Transport Calculations in the Monte Carlo N-Particle (MCNP) Radiation Transport Code

    SciTech Connect

    Morgan C. White

    2000-07-01

    The fundamental motivation for the research presented in this dissertation was the need to development a more accurate prediction method for characterization of mixed radiation fields around medical electron accelerators (MEAs). Specifically, a model is developed for simulation of neutron and other particle production from photonuclear reactions and incorporated in the Monte Carlo N-Particle (MCNP) radiation transport code. This extension of the capability within the MCNP code provides for the more accurate assessment of the mixed radiation fields. The Nuclear Theory and Applications group of the Los Alamos National Laboratory has recently provided first-of-a-kind evaluated photonuclear data for a select group of isotopes. These data provide the reaction probabilities as functions of incident photon energy with angular and energy distribution information for all reaction products. The availability of these data is the cornerstone of the new methodology for state-of-the-art mutually coupled photon-neutron transport simulations. The dissertation includes details of the model development and implementation necessary to use the new photonuclear data within MCNP simulations. A new data format has been developed to include tabular photonuclear data. Data are processed from the Evaluated Nuclear Data Format (ENDF) to the new class ''u'' A Compact ENDF (ACE) format using a standalone processing code. MCNP modifications have been completed to enable Monte Carlo sampling of photonuclear reactions. Note that both neutron and gamma production are included in the present model. The new capability has been subjected to extensive verification and validation (V&V) testing. Verification testing has established the expected basic functionality. Two validation projects were undertaken. First, comparisons were made to benchmark data from literature. These calculations demonstrate the accuracy of the new data and transport routines to better than 25 percent. Second, the ability to

  15. MESTRN: A Deterministic Meson-Muon Transport Code for Space Radiation

    NASA Technical Reports Server (NTRS)

    Blattnig, Steve R.; Norbury, John W.; Norman, Ryan B.; Wilson, John W.; Singleterry, Robert C., Jr.; Tripathi, Ram K.

    2004-01-01

    A safe and efficient exploration of space requires an understanding of space radiations, so that human life and sensitive equipment can be protected. On the way to these sensitive sites, the radiation fields are modified in both quality and quantity. Many of these modifications are thought to be due to the production of pions and muons in the interactions between the radiation and intervening matter. A method used to predict the effects of the presence of these particles on the transport of radiation through materials is developed. This method was then used to develop software, which was used to calculate the fluxes of pions and muons after the transport of a cosmic ray spectrum through aluminum and water. Software descriptions are given in the appendices.

  16. Updated version of the DOT 4 one- and two-dimensional neutron/photon transport code

    SciTech Connect

    Rhoades, W.A.; Childs, R.L.

    1982-07-01

    DOT 4 is designed to allow very large transport problems to be solved on a wide range of computers and memory arrangements. Unusual flexibilty in both space-mesh and directional-quadrature specification is allowed. For example, the radial mesh in an R-Z problem can vary with axial position. The directional quadrature can vary with both space and energy group. Several features improve performance on both deep penetration and criticality problems. The program has been checked and used extensively.

  17. Mercury + VisIt: Integration of a Real-Time Graphical Analysis Capability into a Monte Carlo Transport Code

    SciTech Connect

    O'Brien, M J; Procassini, R J; Joy, K I

    2009-03-09

    Validation of the problem definition and analysis of the results (tallies) produced during a Monte Carlo particle transport calculation can be a complicated, time-intensive processes. The time required for a person to create an accurate, validated combinatorial geometry (CG) or mesh-based representation of a complex problem, free of common errors such as gaps and overlapping cells, can range from days to weeks. The ability to interrogate the internal structure of a complex, three-dimensional (3-D) geometry, prior to running the transport calculation, can improve the user's confidence in the validity of the problem definition. With regard to the analysis of results, the process of extracting tally data from printed tables within a file is laborious and not an intuitive approach to understanding the results. The ability to display tally information overlaid on top of the problem geometry can decrease the time required for analysis and increase the user's understanding of the results. To this end, our team has integrated VisIt, a parallel, production-quality visualization and data analysis tool into Mercury, a massively-parallel Monte Carlo particle transport code. VisIt provides an API for real time visualization of a simulation as it is running. The user may select which plots to display from the VisIt GUI, or by sending VisIt a Python script from Mercury. The frequency at which plots are updated can be set and the user can visualize the simulation results as it is running.

  18. Parallel Monte Carlo transport modeling in the context of a time-dependent, three-dimensional multi-physics code

    SciTech Connect

    Procassini, R.J.

    1997-12-31

    The fine-scale, multi-space resolution that is envisioned for accurate simulations of complex weapons systems in three spatial dimensions implies flop-rate and memory-storage requirements that will only be obtained in the near future through the use of parallel computational techniques. Since the Monte Carlo transport models in these simulations usually stress both of these computational resources, they are prime candidates for parallelization. The MONACO Monte Carlo transport package, which is currently under development at LLNL, will utilize two types of parallelism within the context of a multi-physics design code: decomposition of the spatial domain across processors (spatial parallelism) and distribution of particles in a given spatial subdomain across additional processors (particle parallelism). This implementation of the package will utilize explicit data communication between domains (message passing). Such a parallel implementation of a Monte Carlo transport model will result in non-deterministic communication patterns. The communication of particles between subdomains during a Monte Carlo time step may require a significant level of effort to achieve a high parallel efficiency.

  19. ITS Version 4.0: Electron/photon Monte Carlo transport codes

    SciTech Connect

    Halbleib, J.A,; Kensek, R.P.; Seltzer, S.M.

    1995-07-01

    The current publicly released version of the Integrated TIGER Series (ITS), Version 3.0, has been widely distributed both domestically and internationally, and feedback has been very positive. This feedback as well as our own experience have convinced us to upgrade the system in order to honor specific user requests for new features and to implement other new features that will improve the physical accuracy of the system and permit additional variance reduction. This presentation we will focus on components of the upgrade that (1) improve the physical model, (2) provide new and extended capabilities to the three-dimensional combinatorial-geometry (CG) of the ACCEPT codes, and (3) permit significant variance reduction in an important class of radiation effects applications.

  20. A Two-Dimensional Monte Carlo Code System for Linear Neutron Transport Calculations.

    1980-04-24

    Version 00 KIM (k-infinite-Monte Carlo) solves the steady-state linear neutron transport equation for a fixed source problem or, by successive fixed-source runs, for the eigenvalue problem, in a two-dimensional infinite thermal reactor lattice using the Monte Carlo method. In addition to the combinatorial description of domains, the program allows complex configurations to be represented by a discrete set of points whereby the calculation speed is greatly improved. Configurations are described as the result of overlaysmore » of elementary figures over a basic domain.« less

  1. Simulation of the full-core pin-model by JMCT Monte Carlo neutron-photon transport code

    SciTech Connect

    Li, D.; Li, G.; Zhang, B.; Shu, L.; Shangguan, D.; Ma, Y.; Hu, Z.

    2013-07-01

    Since the large numbers of cells over a million, the tallies over a hundred million and the particle histories over ten billion, the simulation of the full-core pin-by-pin model has become a real challenge for the computers and the computational methods. On the other hand, the basic memory of the model has exceeded the limit of a single CPU, so the spatial domain and data decomposition must be considered. JMCT (J Monte Carlo Transport code) has successful fulfilled the simulation of the full-core pin-by-pin model by the domain decomposition and the nested parallel computation. The k{sub eff} and flux of each cell are obtained. (authors)

  2. The 228bp upstream non-coding region of haloacids transporter gene dehp2 has regulated promoter activity.

    PubMed

    Su, Xianbin; Li, Ruihong; Tsang, Jimmy S H

    2016-11-30

    Biodegradation is an effective way to remove environmental pollutants haloacids, and haloacids uptake is an important step besides cytoplasmic dehalogenation. Previous study has identified a robust haloacids transport system in Burkholderia caribensis MBA4 with two homologous genes deh4p and dehp2 as major players. Both genes are inducible by monochloroacetate (MCA), and dehp2 is conserved among the Burkholderia genus with a two component system upstream. Here we show that dehp2 is not in the same operon with the upstream two component system, and fusion with lacZ confirmed the presence of MCA-inducible promoter activity in the 228bp upstream non-coding region of dehp2. Serial deletion confirmed 112bp upstream is enough for basic promoter activity, but sequence further upstream is useful for enhanced promoter activity. Electrophoretic mobility shift assay of the 228bp region showed a retardation complex with stronger hybridization in the induced condition, suggesting a positive regulation pattern. Regulator(s) binding region was found to lie between -228 to -113bp of dehp2. Quantitative real-time PCR showed that the expressions of dehp2 orthologs in three other Burkholderia species were also MCA-inducible, similar as dehp2. The 5' non-coding regions of these dehp2 orthologs have high sequence similarity with dehp2 promoter, and 100bp upstream of dehp2 orthologs is especially conserved. Our study identified a promoter of haloacids transporter gene that is conserved in the Burkholderia genus, which will benefit future exploitation of them for effective biodegradation of haloacids. PMID:27576348

  3. DOS-HEATING6: A general conduction code with nuclear heat generation derived from DOT-IV transport calculations

    SciTech Connect

    Williams, M.L.; Yuecel, A.; Nadkarny, S.

    1988-05-01

    The HEATING6 heat conduction code is modified to (a) read the multigroup particle fluxes from a two-dimensional DOT-IV neutron- photon transport calculation, (b) interpolate the fluxes from the DOT-IV variable (optional) mesh to the HEATING6 control volume mesh, and (c) fold the interpolated fluxes with kerma factors to obtain a nuclear heating source for the heat conduction equation. The modified HEATING6 is placed as a module in the ORNL discrete ordinates system (DOS), and has been renamed DOS-HEATING6. DOS-HEATING6 provides the capability for determining temperature distributions due to nuclear heating in complex, multi-dimensional systems. All of the original capabilities of HEATING6 are retained for the nuclear heating calculation; e.g., generalized boundary conditions (convective, radiative, finned, fixed temperature or heat flux), temperature and space dependent thermal properties, steady-state or transient analysis, general geometry description, etc. The numerical techniques used in the code are reviewed and the user input instructions and JCL to perform DOS-HEATING6 calculations are presented. Finally a sample problem involving coupled DOT-IV and DOS-HEATING6 calculations of a complex space-reactor configurations described, and the input and output of the calculations are listed. 10 refs., 11 figs., 6 tabs.

  4. Coupling External Radiation Transport Code Results to the GADRAS Detector Response Function

    SciTech Connect

    Mitchell, Dean J.; Thoreson, Gregory G.; Horne, Steven M.

    2014-01-01

    Simulating gamma spectra is useful for analyzing special nuclear materials. Gamma spectra are influenced not only by the source and the detector, but also by the external, and potentially complex scattering environment. The scattering environment can make accurate representations of gamma spectra difficult to obtain. By coupling the Monte Carlo Nuclear Particle (MCNP) code with the Gamma Detector Response and Analysis Software (GADRAS) detector response function, gamma spectrum simulations can be computed with a high degree of fidelity even in the presence of a complex scattering environment. Traditionally, GADRAS represents the external scattering environment with empirically derived scattering parameters. By modeling the external scattering environment in MCNP and using the results as input for the GADRAS detector response function, gamma spectra can be obtained with a high degree of fidelity. This method was verified with experimental data obtained in an environment with a significant amount of scattering material. The experiment used both gamma-emitting sources and moderated and bare neutron-emitting sources. The sources were modeled using GADRAS and MCNP in the presence of the external scattering environment, producing accurate representations of the experimental data.

  5. Towards scalable parellelism in Monte Carlo particle transport codes using remote memory access

    SciTech Connect

    Romano, Paul K; Brown, Forrest B; Forget, Benoit

    2010-01-01

    One forthcoming challenge in the area of high-performance computing is having the ability to run large-scale problems while coping with less memory per compute node. In this work, they investigate a novel data decomposition method that would allow Monte Carlo transport calculations to be performed on systems with limited memory per compute node. In this method, each compute node remotely retrieves a small set of geometry and cross-section data as needed and remotely accumulates local tallies when crossing the boundary of the local spatial domain. initial results demonstrate that while the method does allow large problems to be run in a memory-limited environment, achieving scalability may be difficult due to inefficiencies in the current implementation of RMA operations.

  6. WETAIR: A computer code for calculating thermodynamic and transport properties of air-water mixtures

    NASA Technical Reports Server (NTRS)

    Fessler, T. E.

    1979-01-01

    A computer program subroutine, WETAIR, was developed to calculate the thermodynamic and transport properties of air water mixtures. It determines the thermodynamic state from assigned values of temperature and density, pressure and density, temperature and pressure, pressure and entropy, or pressure and enthalpy. The WETAIR calculates the properties of dry air and water (steam) by interpolating to obtain values from property tables. Then it uses simple mixing laws to calculate the properties of air water mixtures. Properties of mixtures with water contents below 40 percent (by mass) can be calculated at temperatures from 273.2 to 1497 K and pressures to 450 MN/sq m. Dry air properties can be calculated at temperatures as low as 150 K. Water properties can be calculated at temperatures to 1747 K and pressures to 100 MN/sq m. The WETAIR is available in both SFTRAN and FORTRAN.

  7. ITS version 5.0 :the integrated TIGER series of coupled electron/Photon monte carlo transport codes with CAD geometry.

    SciTech Connect

    Franke, Brian Claude; Kensek, Ronald Patrick; Laub, Thomas William

    2005-09-01

    ITS is a powerful and user-friendly software package permitting state-of-the-art Monte Carlo solution of linear time-independent coupled electron/photon radiation transport problems, with or without the presence of macroscopic electric and magnetic fields of arbitrary spatial dependence. Our goal has been to simultaneously maximize operational simplicity and physical accuracy. Through a set of preprocessor directives, the user selects one of the many ITS codes. The ease with which the makefile system is applied combines with an input scheme based on order-independent descriptive keywords that makes maximum use of defaults and internal error checking to provide experimentalists and theorists alike with a method for the routine but rigorous solution of sophisticated radiation transport problems. Physical rigor is provided by employing accurate cross sections, sampling distributions, and physical models for describing the production and transport of the electron/photon cascade from 1.0 GeV down to 1.0 keV. The availability of source code permits the more sophisticated user to tailor the codes to specific applications and to extend the capabilities of the codes to more complex applications. Version 5.0, the latest version of ITS, contains (1) improvements to the ITS 3.0 continuous-energy codes, (2) multigroup codes with adjoint transport capabilities, (3) parallel implementations of all ITS codes, (4) a general purpose geometry engine for linking with CAD or other geometry formats, and (5) the Cholla facet geometry library. Moreover, the general user friendliness of the software has been enhanced through increased internal error checking and improved code portability.

  8. Applicability of the MCPNX particle transport code for determination of the source correction effect in positron lifetime measurements on thin polymer films

    SciTech Connect

    J.M. Urban-Klaehn

    2007-09-01

    The method presented herein uses the MCNPX Monte Carlo particle transport code to track individual positrons and other particles through geometry that accounts for the detectors, backing foils, samples and sources with their actual sizes, positions and material characteristics. Polymer material, polydimethylsiloxane (PDMS), with different thickness of films served as samples. The excellent agreement between the experimental results and the MCNPX simulation of source correction effects for varied positron sources and different film thicknesses validates the applicability of the MCNPX code.

  9. PC-1D installation manual and user's guide

    SciTech Connect

    Basore, P.A.

    1991-05-01

    PC-1D is a software package for personal computers that uses finite-element analysis to solve the fully-coupled two-carrier semiconductor transport equations in one dimension. This program is particularly useful for analyzing the performance of optoelectronic devices such as solar cells, but can be applied to any bipolar device whose carrier flows are primarily one-dimensional. This User's Guide provides the information necessary to install PC-1D, define a problem for solution, solve the problem, and examine the results. Example problems are presented which illustrate these steps. The physical models and numerical methods utilized are presented in detail. This document supports version 3.1 of PC-1D, which incorporates faster numerical algorithms with better convergence properties than previous versions of the program. 51 refs., 17 figs., 5 tabs.

  10. Neutron transport-burnup code MCORGS and its application in fusion fission hybrid blanket conceptual research

    NASA Astrophysics Data System (ADS)

    Shi, Xue-Ming; Peng, Xian-Jue

    2016-09-01

    Fusion science and technology has made progress in the last decades. However, commercialization of fusion reactors still faces challenges relating to higher fusion energy gain, irradiation-resistant material, and tritium self-sufficiency. Fusion Fission Hybrid Reactors (FFHR) can be introduced to accelerate the early application of fusion energy. Traditionally, FFHRs have been classified as either breeders or transmuters. Both need partition of plutonium from spent fuel, which will pose nuclear proliferation risks. A conceptual design of a Fusion Fission Hybrid Reactor for Energy (FFHR-E), which can make full use of natural uranium with lower nuclear proliferation risk, is presented. The fusion core parameters are similar to those of the International Thermonuclear Experimental Reactor. An alloy of natural uranium and zirconium is adopted in the fission blanket, which is cooled by light water. In order to model blanket burnup problems, a linkage code MCORGS, which couples MCNP4B and ORIGEN-S, is developed and validated through several typical benchmarks. The average blanket energy Multiplication and Tritium Breeding Ratio can be maintained at 10 and 1.15 respectively over tens of years of continuous irradiation. If simple reprocessing without separation of plutonium from uranium is adopted every few years, FFHR-E can achieve better neutronic performance. MCORGS has also been used to analyze the ultra-deep burnup model of Laser Inertial Confinement Fusion Fission Energy (LIFE) from LLNL, and a new blanket design that uses Pb instead of Be as the neutron multiplier is proposed. In addition, MCORGS has been used to simulate the fluid transmuter model of the In-Zinerater from Sandia. A brief comparison of LIFE, In-Zinerater, and FFHR-E will be given.

  11. Monte Carlo N-Particle Transport Code System To Simulate Time-Analysis Quantities.

    2012-04-15

    Version: 00 US DOE 10CFR810 Jurisdiction. The Monte Carlo simulation of correlation measurements that rely on the detection of fast neutrons and photons from fission requires that particle emissions and interactions following a fission event be described as close to reality as possible. The -PoliMi extension to MCNP and to MCNPX was developed to simulate correlated-particle and the subsequent interactions as close as possible to the physical behavior. Initially, MCNP-PoliMi, a modification of MCNP4C, wasmore » developed. The first version was developed in 2001-2002 and released in early 2004 to the Radiation Safety Information Computational Center (RSICC). It was developed for research purposes, to simulate correlated counts in organic scintillation detectors, sensitive to fast neutrons and gamma rays. Originally, the field of application was nuclear safeguards; however subsequent improvements have enhanced the ability to model measurements in other research fields as well. During 2010-2011 the -PoliMi modification was ported into MCNPX-2.7.0, leading to the development of MCNPX-PoliMi. Now the -PoliMi v2.0 modifications are distributed as a patch to MCNPX-2.7.0 which currently is distributed in the RSICC PACKAGE BCC-004 MCNP6_BETA2/MCNP5/MCNPX. Also included in the package is MPPost, a versatile code that provides simulated detector response. By taking advantage of the modifications in MCNPX-PoliMi, MPPost can provide an accurate simulation of the detector response for a variety of detection scenarios.« less

  12. Non-binary coded modulation for FMF-based coherent optical transport networks

    NASA Astrophysics Data System (ADS)

    Lin, Changyu

    The Internet has fundamentally changed the way of modern communication. Current trends indicate that high-capacity demands are not going to be saturated anytime soon. From Shannon's theory, we know that information capacity is a logarithmic function of signal-to-noise ratio (SNR), but a linear function of the number of dimensions. Ideally, we can increase the capacity by increasing the launch power, however, due to the nonlinear characteristics of silica optical fibers that imposes a constraint on the maximum achievable optical-signal-to-noise ratio (OSNR). So there exists a nonlinear capacity limit on the standard single mode fiber (SSMF). In order to satisfy never ending capacity demands, there are several attempts to employ additional degrees of freedom in transmission system, such as few-mode fibers (FMFs), which can dramatically improve the spectral efficiency. On the other hand, for the given physical links and network equipment, an effective solution to relax the OSNR requirement is based on forward error correction (FEC), as the response to the demands of high speed reliable transmission. In this dissertation, we first discuss the model of FMF with nonlinear effects considered. Secondly, we simulate the FMF based OFDM system with various compensation and modulation schemes. Thirdly, we propose tandem-turbo-product nonbinary byte-interleaved coded modulation (BICM) for next-generation high-speed optical transmission systems. Fourthly, we study the Q factor and mutual information as threshold in BICM scheme. Lastly, an experimental study of the limits of nonlinearity compensation with digital signal processing has been conducted.

  13. Development of a S{sub n} transport code based on discontinuous finite element method and coarse mesh finite difference formulation

    SciTech Connect

    Lee, D. W.; Joo, H. G.

    2013-07-01

    The methods and performance of a three-dimensional S{sub n} transport code employing the Discontinuous Finite Element Method (DFEM) and the Coarse Mesh Finite Difference (CMFD) formulation are presented. The mesh generator GMSH and a post processing visualization tool Visit are combined with the code for flexible geometry processing and versatile visualization. The CMFD method for DFEM Sn applications is formulated and the performance of the CMFD acceleration of eigenvalue calculations is demonstrated for a simple set of neutron transport problems. (authors)

  14. Parafermion stabilizer codes

    NASA Astrophysics Data System (ADS)

    Güngördü, Utkan; Nepal, Rabindra; Kovalev, Alexey A.

    2014-10-01

    We define and study parafermion stabilizer codes, which can be viewed as generalizations of Kitaev's one-dimensional (1D) model of unpaired Majorana fermions. Parafermion stabilizer codes can protect against low-weight errors acting on a small subset of parafermion modes in analogy to qudit stabilizer codes. Examples of several smallest parafermion stabilizer codes are given. A locality-preserving embedding of qudit operators into parafermion operators is established that allows one to map known qudit stabilizer codes to parafermion codes. We also present a local 2D parafermion construction that combines topological protection of Kitaev's toric code with additional protection relying on parity conservation.

  15. Axenic Leishmania amazonensis Promastigotes Sense both the External and Internal Arginine Pool Distinctly Regulating the Two Transporter-Coding Genes

    PubMed Central

    Castilho-Martins, Emerson A.; Laranjeira da Silva, Maria Fernanda; dos Santos, Marcos G.; Muxel, Sandra M.; Floeter-Winter, Lucile M.

    2011-01-01

    Leishmania (L.) amazonensis uses arginine to synthesize polyamines to support its growth and survival. Here we describe the presence of two gene copies, arranged in tandem, that code for the arginine transporter. Both copies show similar Open Reading Frames (ORFs), which are 93% similar to the L. (L.) donovani AAP3 gene, but their 5′ and 3′ UTR's have distinct regions. According to quantitative RT-PCR, the 5.1 AAP3 mRNA amount was increased more than 3 times that of the 4.7 AAP3 mRNA along the promastigote growth curve. Nutrient deprivation for 4 hours and then supplemented or not with arginine (400 µM) resulted in similar 4.7 AAP3 mRNA copy-numbers compared to the starved and control parasites. Conversely, the 5.1 AAP3 mRNA copy-numbers increased in the starved parasites but not in ones supplemented with arginine (p<0.05). These results correlate with increases in amino acid uptake. Both Meta1 and arginase mRNAs remained constant with or without supplementation. The same starvation experiment was performed using a L. (L.) amazonensis null knockout for arginase (arg-) and two other mutants containing the arginase ORF with (arg-/ARG) or without the glycosomal addressing signal (arg-/argΔSKL). The arg- and the arg-/argΔSKL mutants did not show the same behavior as the wild-type (WT) parasite or the arg-/ARG mutant. This can be an indicative that the internal pool of arginine is also important for controlling transporter expression and function. By inhibiting mRNA transcription or/and mRNA maturation, we showed that the 5.1 AAP3 mRNA did not decay after 180 min, but the 4.7 AAP3 mRNA presented a half-life decay of 32.6 +/− 5.0 min. In conclusion, parasites can regulate amino acid uptake by increasing the amount of transporter-coding mRNA, possibly by regulating the mRNA half-life in an environment where the amino acid is not present or is in low amounts. PMID:22114701

  16. A 1-D evolutionary model for icy satellites, applied to Enceladus

    NASA Astrophysics Data System (ADS)

    Prialnik, Dina; Malamud, Uri

    2015-11-01

    A 1-D long-term evolution code for icy satellites is presented, which couples multiple processes: water migration, geochemical reactions, water and silicate phase transitions, crystallization, compaction by self-gravity, and ablation. The code takes into account various energy sources: tidal heating, radiogenic heating, geochemical energy released by serpentinization or absorbed by mineral dehydration, gravitational energy, and insolation. It includes heat transport by conduction, convection, and advection.The code is applied to Enceladus, by guessing the initial conditions that would render a structure compatible with present-day observations, and adopting a homogeneous initial structure. Assuming that the satellite has been losing water continually along its evolution, it follows that it was formed as a more massive, more ice-rich and more porous object, and gradually transformed into its present day state, due to sustained tidal heating. Several initial compositions and evolution scenarios are considered, and the evolution is simulated for the age of the Solar System. The results corresponding to the present configuration are confronted with the available observational constraints. The present configuration is shown to be differentiated into a pure icy mantle, several tens of km thick, overlying a rocky core, composed of dehydrated rock in the central part and hydrated rock in the outer part. Such a differentiated structure is obtained not only for Enceladus, but for other medium size ice-rich bodies as well.Predictions for Enceladus are a higher rock/ice mass ratio than previously assumed, and a thinner ice mantle, compatible with recent estimates based on gravity field measurements. Although, obviously, the 1-D model cannot be used to explain local phenomena, it sheds light on the internal structure invoked in explanations of localized features and activities.

  17. Rn3D: A finite element code for simulating gas flow and radon transport in variably saturated, nonisothermal porous media. User`s manual, Version 1.0

    SciTech Connect

    Holford, D.J.

    1994-01-01

    This document is a user`s manual for the Rn3D finite element code. Rn3D was developed to simulate gas flow and radon transport in variably saturated, nonisothermal porous media. The Rn3D model is applicable to a wide range of problems involving radon transport in soil because it can simulate either steady-state or transient flow and transport in one-, two- or three-dimensions (including radially symmetric two-dimensional problems). The porous materials may be heterogeneous and anisotropic. This manual describes all pertinent mathematics related to the governing, boundary, and constitutive equations of the model, as well as the development of the finite element equations used in the code. Instructions are given for constructing Rn3D input files and executing the code, as well as a description of all output files generated by the code. Five verification problems are given that test various aspects of code operation, complete with example input files, FORTRAN programs for the respective analytical solutions, and plots of model results. An example simulation is presented to illustrate the type of problem Rn3D is designed to solve. Finally, instructions are given on how to convert Rn3D to simulate systems other than radon, air, and water.

  18. General Purpose Monte Carlo Multigroup Neutron and Gamma-Ray Transport Code System. We recommend C00474/ALLCP/02 MORSE-CGA.

    1991-08-01

    Version: 00 The original MORSE code was a multipurpose neutron and gamma-ray transport Monte Carlo code. It was designed as a tool for solving most shielding problems. Through the use of multigroup cross sections, the solution of neutron, gamma-ray, or coupled neutron-gamma-ray problems could be obtained in either the forward or adjoint mode. Time dependence for both shielding and criticality problems is provided. General three-dimensional geometry could be used with an albedo option available atmore » any material surface. Isotropic or anisotropic scattering up to a P16 expansion of the angular distribution was allowed. MORSE-CG incorporated the Mathematical Applications, Inc. (MAGI) combinatorial geometry routines. MORSE-B modifies the Monte Carlo neutron and photon transport computer code MORSE-CG by adding routines which allow various flexible options.« less

  19. Transport simulations of linear plasma generators with the B2.5-Eirene and EMC3-Eirene codes

    DOE PAGES

    Rapp, Juergen; Owen, Larry W.; Bonnin, X.; Caneses, J. F.; Canik, John M.; Corr, Cormac; Lore, J. D.

    2014-12-20

    Linear plasma generators are cost effective facilities to simulate divertor plasma conditions of present and future fusion reactors. For this research, the codes B2.5-Eirene and EMC3-Eirene were extensively used for design studies of the planned Material Plasma Exposure eXperiment (MPEX). Effects on the target plasma of the gas fueling and pumping locations, heating power, device length, magnetic configuration and transport model were studied with B2.5-Eirene. Effects of tilted or vertical targets were calculated with EMC3-Eirene and showed that spreading the incident flux over a larger area leads to lower density, higher temperature and off-axis profile peaking in front of themore » target. In conclusion, the simulations indicate that with sufficient heating power MPEX can reach target plasma conditions that are similar to those expected in the ITER divertor. B2.5-Eirene simulations of the MAGPIE experiment have been carried out in order to establish an additional benchmark with experimental data from a linear device with helicon wave heating.« less

  20. Transport simulations of linear plasma generators with the B2.5-Eirene and EMC3-Eirene codes

    SciTech Connect

    Rapp, Juergen; Owen, Larry W.; Bonnin, X.; Caneses, J. F.; Canik, John M.; Corr, Cormac; Lore, J. D.

    2014-12-20

    Linear plasma generators are cost effective facilities to simulate divertor plasma conditions of present and future fusion reactors. For this research, the codes B2.5-Eirene and EMC3-Eirene were extensively used for design studies of the planned Material Plasma Exposure eXperiment (MPEX). Effects on the target plasma of the gas fueling and pumping locations, heating power, device length, magnetic configuration and transport model were studied with B2.5-Eirene. Effects of tilted or vertical targets were calculated with EMC3-Eirene and showed that spreading the incident flux over a larger area leads to lower density, higher temperature and off-axis profile peaking in front of the target. In conclusion, the simulations indicate that with sufficient heating power MPEX can reach target plasma conditions that are similar to those expected in the ITER divertor. B2.5-Eirene simulations of the MAGPIE experiment have been carried out in order to establish an additional benchmark with experimental data from a linear device with helicon wave heating.

  1. Using reactive transport codes to provide mechanistic biogeochemistry representations in global land surface models: CLM-PFLOTRAN 1.0

    NASA Astrophysics Data System (ADS)

    Tang, G.; Yuan, F.; Bisht, G.; Hammond, G. E.; Lichtner, P. C.; Kumar, J.; Mills, R. T.; Xu, X.; Andre, B.; Hoffman, F. M.; Painter, S. L.; Thornton, P. E.

    2015-12-01

    We explore coupling to a configurable subsurface reactive transport code as a flexible and extensible approach to biogeochemistry in land surface models; our goal is to facilitate testing of alternative models and incorporation of new understanding. A reaction network with the CLM-CN decomposition, nitrification, denitrification, and plant uptake is used as an example. We implement the reactions in the open-source PFLOTRAN code, coupled with the Community Land Model (CLM), and test at Arctic, temperate, and tropical sites. To make the reaction network designed for use in explicit time stepping in CLM compatible with the implicit time stepping used in PFLOTRAN, the Monod substrate rate-limiting function with a residual concentration is used to represent the limitation of nitrogen availability on plant uptake and immobilization. To achieve accurate, efficient, and robust numerical solutions, care needs to be taken to use scaling, clipping, or log transformation to avoid negative concentrations during the Newton iterations. With a tight relative update tolerance to avoid false convergence, an accurate solution can be achieved with about 50 % more computing time than CLM in point mode site simulations using either the scaling or clipping methods. The log transformation method takes 60-100 % more computing time than CLM. The computing time increases slightly for clipping and scaling; it increases substantially for log transformation for half saturation decrease from 10-3 to 10-9 mol m-3, which normally results in decreasing nitrogen concentrations. The frequent occurrence of very low concentrations (e.g. below nanomolar) can increase the computing time for clipping or scaling by about 20 %; computing time can be doubled for log transformation. Caution needs to be taken in choosing the appropriate scaling factor because a small value caused by a negative update to a small concentration may diminish the update and result in false convergence even with very tight relative

  2. Using reactive transport codes to provide mechanistic biogeochemistry representations in global land surface models: CLM-PFLOTRAN 1.0

    DOE PAGES

    Tang, G.; Yuan, F.; Bisht, G.; Hammond, G. E.; Lichtner, P. C.; Kumar, J.; Mills, R. T.; Xu, X.; Andre, B.; Hoffman, F. M.; et al

    2015-12-17

    We explore coupling to a configurable subsurface reactive transport code as a flexible and extensible approach to biogeochemistry in land surface models; our goal is to facilitate testing of alternative models and incorporation of new understanding. A reaction network with the CLM-CN decomposition, nitrification, denitrification, and plant uptake is used as an example. We implement the reactions in the open-source PFLOTRAN code, coupled with the Community Land Model (CLM), and test at Arctic, temperate, and tropical sites. To make the reaction network designed for use in explicit time stepping in CLM compatible with the implicit time stepping used in PFLOTRAN,more » the Monod substrate rate-limiting function with a residual concentration is used to represent the limitation of nitrogen availability on plant uptake and immobilization. To achieve accurate, efficient, and robust numerical solutions, care needs to be taken to use scaling, clipping, or log transformation to avoid negative concentrations during the Newton iterations. With a tight relative update tolerance to avoid false convergence, an accurate solution can be achieved with about 50 % more computing time than CLM in point mode site simulations using either the scaling or clipping methods. The log transformation method takes 60–100 % more computing time than CLM. The computing time increases slightly for clipping and scaling; it increases substantially for log transformation for half saturation decrease from 10−3 to 10−9 mol m−3, which normally results in decreasing nitrogen concentrations. The frequent occurrence of very low concentrations (e.g. below nanomolar) can increase the computing time for clipping or scaling by about 20 %; computing time can be doubled for log transformation. Caution needs to be taken in choosing the appropriate scaling factor because a small value caused by a negative update to a small concentration may diminish the update and result in false convergence even with very

  3. Monte Carlo N–Particle Transport Code System Including MCNP6.1, MCNP5-1.60, MCNPX-2.7.0 and Data Libraries.

    SciTech Connect

    GOORLEY, TIM

    2013-07-16

    Version 00 US DOE 10CFR810 Jurisdiction. MCNP6™ is a general-purpose, continuous-energy, generalized-geometry, time-dependent, Monte Carlo radiation-transport code designed to track many particle types over broad ranges of energies. MCNP6 represents the culmination of a multi-year effort to merge the MCNP5™ [X-503] and MCNPX™ [PEL11] codes into a single product comprising all features of both. For those familiar with previous versions of MCNP, you will discover the code has been expanded to handle a multitude of particles and to include model physics options for energies above the cross-section table range, a material burnup feature, and delayed particle production. Expanded and/or new tally, source, and variance-reduction options are available to the user as well as an improved plotting capability. The capability to calculate keff eigenvalues for fissile systems remains a standard feature. Although MCNP6 is simply and accurately described as the merger of MCNP5 and MCNPX capabilities, the result is much more than the sum of these two computer codes. MCNP6 is the result of five years of effort by the MCNP5 and MCNPX code development teams. These groups of people, residing in the Los Alamos National Laboratory's (LANL) X Computational Physics Division, Monte Carlo Codes Group (XCP-3), and Nuclear Engineering and Nonproliferation Division, Systems Design and Analysis Group (NEN-5, formerly D-5), have combined their code development efforts to produce the next evolution of MCNP. While maintenance and bug fixes will continue for MCNP5 v.1.60 and MCNPX v.2.7.0 for upcoming years, new code development capabilities will be developed and released only in MCNP6. In fact, this initial production release of MCNP6 (v. 1.0) contains 16 new features not previously found in either code. These new features include (among others) the abilities to import unstructured mesh geometries from the finite element code Abaqus, to transport photons down to 1.0 eV, to model complete atomic

  4. Monte Carlo N–Particle Transport Code System Including MCNP6.1, MCNP5-1.60, MCNPX-2.7.0 and Data Libraries.

    SciTech Connect

    GOORLEY, TIM

    2013-07-16

    Version 01 US DOE 10CFR810 Jurisdiction. MCNP6™ is a general-purpose, continuous-energy, generalized-geometry, time-dependent, Monte Carlo radiation-transport code designed to track many particle types over broad ranges of energies. MCNP6 represents the culmination of a multi-year effort to merge the MCNP5™ [X-503] and MCNPX™ [PEL11] codes into a single product comprising all features of both. For those familiar with previous versions of MCNP, you will discover the code has been expanded to handle a multitude of particles and to include model physics options for energies above the cross-section table range, a material burnup feature, and delayed particle production. Expanded and/or new tally, source, and variance-reduction options are available to the user as well as an improved plotting capability. The capability to calculate keff eigenvalues for fissile systems remains a standard feature. Although MCNP6 is simply and accurately described as the merger of MCNP5 and MCNPX capabilities, the result is much more than the sum of these two computer codes. MCNP6 is the result of five years of effort by the MCNP5 and MCNPX code development teams. These groups of people, residing in the Los Alamos National Laboratory's (LANL) X Computational Physics Division, Monte Carlo Codes Group (XCP-3), and Nuclear Engineering and Nonproliferation Division, Systems Design and Analysis Group (NEN-5, formerly D-5), have combined their code development efforts to produce the next evolution of MCNP. While maintenance and bug fixes will continue for MCNP5 v.1.60 and MCNPX v.2.7.0 for upcoming years, new code development capabilities will be developed and released only in MCNP6. In fact, this initial production release of MCNP6 (v. 1.0) contains 16 new features not previously found in either code. These new features include (among others) the abilities to import unstructured mesh geometries from the finite element code Abaqus, to transport photons down to 1.0 eV, to model complete atomic

  5. Monte Carlo N–Particle Transport Code System Including MCNP6.1, MCNP5-1.60, MCNPX-2.7.0 and Data Libraries.

    2013-07-16

    Version 00 US DOE 10CFR810 Jurisdiction. MCNP6™ is a general-purpose, continuous-energy, generalized-geometry, time-dependent, Monte Carlo radiation-transport code designed to track many particle types over broad ranges of energies. MCNP6 represents the culmination of a multi-year effort to merge the MCNP5™ [X-503] and MCNPX™ [PEL11] codes into a single product comprising all features of both. For those familiar with previous versions of MCNP, you will discover the code has been expanded to handle a multitude ofmore » particles and to include model physics options for energies above the cross-section table range, a material burnup feature, and delayed particle production. Expanded and/or new tally, source, and variance-reduction options are available to the user as well as an improved plotting capability. The capability to calculate keff eigenvalues for fissile systems remains a standard feature. Although MCNP6 is simply and accurately described as the merger of MCNP5 and MCNPX capabilities, the result is much more than the sum of these two computer codes. MCNP6 is the result of five years of effort by the MCNP5 and MCNPX code development teams. These groups of people, residing in the Los Alamos National Laboratory's (LANL) X Computational Physics Division, Monte Carlo Codes Group (XCP-3), and Nuclear Engineering and Nonproliferation Division, Systems Design and Analysis Group (NEN-5, formerly D-5), have combined their code development efforts to produce the next evolution of MCNP. While maintenance and bug fixes will continue for MCNP5 v.1.60 and MCNPX v.2.7.0 for upcoming years, new code development capabilities will be developed and released only in MCNP6. In fact, this initial production release of MCNP6 (v. 1.0) contains 16 new features not previously found in either code. These new features include (among others) the abilities to import unstructured mesh geometries from the finite element code Abaqus, to transport photons down to 1.0 eV, to model

  6. Monte Carlo N–Particle Transport Code System Including MCNP6.1, MCNP5-1.60, MCNPX-2.7.0 and Data Libraries.

    2013-07-16

    Version 01 US DOE 10CFR810 Jurisdiction. MCNP6™ is a general-purpose, continuous-energy, generalized-geometry, time-dependent, Monte Carlo radiation-transport code designed to track many particle types over broad ranges of energies. MCNP6 represents the culmination of a multi-year effort to merge the MCNP5™ [X-503] and MCNPX™ [PEL11] codes into a single product comprising all features of both. For those familiar with previous versions of MCNP, you will discover the code has been expanded to handle a multitude ofmore » particles and to include model physics options for energies above the cross-section table range, a material burnup feature, and delayed particle production. Expanded and/or new tally, source, and variance-reduction options are available to the user as well as an improved plotting capability. The capability to calculate keff eigenvalues for fissile systems remains a standard feature. Although MCNP6 is simply and accurately described as the merger of MCNP5 and MCNPX capabilities, the result is much more than the sum of these two computer codes. MCNP6 is the result of five years of effort by the MCNP5 and MCNPX code development teams. These groups of people, residing in the Los Alamos National Laboratory's (LANL) X Computational Physics Division, Monte Carlo Codes Group (XCP-3), and Nuclear Engineering and Nonproliferation Division, Systems Design and Analysis Group (NEN-5, formerly D-5), have combined their code development efforts to produce the next evolution of MCNP. While maintenance and bug fixes will continue for MCNP5 v.1.60 and MCNPX v.2.7.0 for upcoming years, new code development capabilities will be developed and released only in MCNP6. In fact, this initial production release of MCNP6 (v. 1.0) contains 16 new features not previously found in either code. These new features include (among others) the abilities to import unstructured mesh geometries from the finite element code Abaqus, to transport photons down to 1.0 eV, to model

  7. Simulating ion beam extraction from a single aperture triode acceleration column: A comparison of the beam transport codes IGUN and PBGUNS with test stand data

    SciTech Connect

    Patel, A.; Wills, J. S. C.; Diamond, W. T.

    2008-04-15

    Ion beam extraction from two different ion sources with single aperture triode extraction columns was simulated with the particle beam transport codes PBGUNS and IGUN. For each ion source, the simulation results are compared to experimental data generated on well-equipped test stands. Both codes reproduced the qualitative behavior of the extracted ion beams to incremental and scaled changes to the extraction electrode geometry observed on the test stands. Numerical values of optimum beam currents and beam emittance generated by the simulations also agree well with test stand data.

  8. Numerical simulations of heavily polluted fine-grained sediment remobilization using 1D, 1D+, and 2D channel schematization.

    PubMed

    Kaiglová, Jana; Langhammer, Jakub; Jiřinec, Petr; Janský, Bohumír; Chalupová, Dagmar

    2015-03-01

    This article used various hydrodynamic and sediment transport models to analyze the potential and the limits of different channel schematizations. The main aim was to select and evaluate the most suitable simulation method for fine-grained sediment remobilization assessment. Three types of channel schematization were selected to study the flow potential for remobilizing fine-grained sediment in artificially modified channels. Schematization with a 1D cross-sectional horizontal plan, a 1D+ approach, splitting the riverbed into different functional zones, and full 2D mesh, adopted in MIKE by the DHI modeling suite, was applied to the study. For the case study, a 55-km stretch of the Bílina River, in the Czech Republic, Central Europe, which has been heavily polluted by the chemical and coal mining industry since the mid-twentieth century, was selected. Long-term exposure to direct emissions of toxic pollutants including heavy metals and persistent organic pollutants (POPs) resulted in deposits of pollutants in fine-grained sediments in the riverbed. Simulations, based on three hydrodynamic model schematizations, proved that for events not exceeding the extent of the riverbed profile, the 1D schematization can provide comparable results to a 2D model. The 1D+ schematization can improve accuracy while keeping the benefits of high-speed simulation and low requirements of input DEM data, but the method's suitability is limited by the channel properties. PMID:25687259

  9. 1-D Numerical Analysis of ABCC Engine Performance

    NASA Technical Reports Server (NTRS)

    Holden, Richard

    1999-01-01

    ABCC engine combines air breathing and rocket engine into a single engine to increase the specific impulse over an entire flight trajectory. Except for the heat source, the basic operation of the ABCC is similar to the basic operation of the RBCC engine. The ABCC is intended to have a higher specific impulse than the RBCC for single stage Earth to orbit vehicle. Computational fluid dynamics (CFD) is a useful tool for the analysis of complex transport processes in various components in ABCC propulsion system. The objective of the present research was to develop a transient 1-D numerical model using conservation of mass, linear momentum, and energy equations that could be used to predict flow behavior throughout a generic ABCC engine following a flight path. At specific points during the development of the 1-D numerical model a myriad of tests were performed to prove the program produced consistent, realistic numbers that follow compressible flow theory for various inlet conditions.

  10. Upstream Design and 1D-CAE

    NASA Astrophysics Data System (ADS)

    Sawada, Hiroyuki

    Recently, engineering design environment of Japan is changing variously. Manufacturing companies are being challenged to design and bring out products that meet the diverse demands of customers and are competitive against those produced by rising countries(1). In order to keep and strengthen the competitiveness of Japanese companies, it is necessary to create new added values as well as conventional ones. It is well known that design at the early stages has a great influence on the final design solution. Therefore, design support tools for the upstream design is necessary for creating new added values. We have established a research society for 1D-CAE (1 Dimensional Computer Aided Engineering)(2), which is a general term for idea, methodology and tools applicable for the upstream design support, and discuss the concept and definition of 1D-CAE. This paper reports our discussion about 1D-CAE.

  11. An updated version of BOLTZWANN: A code for the evaluation of thermoelectric and electronic transport properties with a maximally-localized Wannier functions basis

    NASA Astrophysics Data System (ADS)

    Pizzi, Giovanni; Volja, Dmitri; Kozinsky, Boris; Fornari, Marco; Marzari, Nicola

    2014-08-01

    BoltzWann is a code to evaluate thermoelectric and electronic transport properties of extended systems with a maximally-localized Wannier function basis set. The semiclassical Boltzmann transport equations for the homogeneous infinite system are solved in the constant relaxation-time approximation and band energies and band derivatives are obtained via Wannier interpolations. Thanks to the exponential localization of the Wannier functions obtained, very high accuracy in the Brillouin zone integrals can be achieved with very moderate computational costs. Moreover, the analytical expression for the band derivatives in the Wannier basis resolves any issues that may occur when evaluating derivatives near band crossings. We present here an updated version of the BoltzWann code, which is now fully integrated within Wannier90 version 2.0, with minor bug fixes and the possibility to study also two-dimensional systems.

  12. General Purpose Monte Carlo Multigroup Neutron and Gamma-Ray Transport Code System with Array Geometry Capability. We recommend C00474/ALLCP/02 MORSE-CGA.

    1991-05-01

    Version 00 MORSE-CGA was developed to add the capability of modelling rectangular lattices for nuclear reactor cores or for multipartitioned structures. It thus enhances the capability of the MORSE code system. The MORSE code is a multipurpose neutron and gamma-ray transport Monte Carlo code. It has been designed as a tool for solving most shielding problems. Through the use of multigroup cross sections, the solution of neutron, gamma-ray, or coupled neutron-gamma-ray problems may be obtainedmore » in either the forward or adjoint mode. Time dependence for both shielding and criticality problems is provided. General three-dimensional geometry may be used with an albedo option available at any material surface. Isotropic or anisotropic scattering up to a P16 expansion of the angular distribution is allowed.« less

  13. Determination of neutron flux distribution by using ANISN, a one-dimensional discrete S sub n ordinates transport code with anisotropic scattering

    NASA Technical Reports Server (NTRS)

    Ghorai, S. K.

    1983-01-01

    The purpose of this project was to use a one-dimensional discrete coordinates transport code called ANISN in order to determine the energy-angle-spatial distribution of neutrons in a 6-feet cube rock box which houses a D-T neutron generator at its center. The project was two-fold. The first phase of the project involved adaptation of the ANISN code written for an IBM 360/75/91 computer to the UNIVAC system at JSC. The second phase of the project was to use the code with proper geometry, source function and rock material composition in order to determine the neutron flux distribution around the rock box when a 14.1 MeV neutron generator placed at its center is activated.

  14. TBC1D1 reduces palmitate oxidation by inhibiting β-HAD activity in skeletal muscle.

    PubMed

    Maher, A C; McFarlan, J; Lally, J; Snook, L A; Bonen, A

    2014-11-01

    In skeletal muscle the Rab-GTPase-activating protein TBC1D1 has been implicated in the regulation of fatty acid oxidation by an unknown mechanism. We determined whether TBC1D1 altered fatty acid utilization via changes in protein-mediated fatty acid transport and/or selected enzymes regulating mitochondrial fatty acid oxidation. We also determined the effects of TBC1D1 on glucose transport and oxidation. Electrotransfection of mouse soleus muscles with TBC1D1 cDNA increased TBC1D1 protein after 2 wk (P<0.05), without altering its paralog AS160. TBC1D1 overexpression decreased basal palmitate oxidation (-22%) while blunting 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR)-stimulated palmitate oxidation (-18%). There was a tendency to increase fatty acid esterification (+10 nmol·g(-1)·60 min(-1), P=0.07), which reflected the reduction in fatty acid oxidation (-12 nmol·g(-1)·60 min(-1)). Concomitantly, basal (+21%) and AICAR-stimulated glucose oxidation (+8%) were increased in TBC1D1-transfected muscles relative to their respective controls (P<0.05), independent of changes in GLUT4 and glucose transport. The reductions in TBC1D1-mediated fatty acid oxidation could not be attributed to changes in the transporter FAT/CD36, muscle mitochondrial content, CPT1 expression or the expression and phosphorylation of AS160, acetyl-CoA carboxylase, or AMPK. However, TBC1D1 overexpression reduced β-HAD enzyme activity (-18%, P<0.05). In conclusion, TBC1D1-mediated reduction of muscle fatty acid oxidation appears to occur via inhibition of β-HAD activity.

  15. Assessment of shielding analysis methods, codes, and data for spent fuel transport/storage applications. [Radiation dose rates from shielded spent fuels and high-level radioactive waste

    SciTech Connect

    Parks, C.V.; Broadhead, B.L.; Hermann, O.W.; Tang, J.S.; Cramer, S.N.; Gauthey, J.C.; Kirk, B.L.; Roussin, R.W.

    1988-07-01

    This report provides a preliminary assessment of the computational tools and existing methods used to obtain radiation dose rates from shielded spent nuclear fuel and high-level radioactive waste (HLW). Particular emphasis is placed on analysis tools and techniques applicable to facilities/equipment designed for the transport or storage of spent nuclear fuel or HLW. Applications to cask transport, storage, and facility handling are considered. The report reviews the analytic techniques for generating appropriate radiation sources, evaluating the radiation transport through the shield, and calculating the dose at a desired point or surface exterior to the shield. Discrete ordinates, Monte Carlo, and point kernel methods for evaluating radiation transport are reviewed, along with existing codes and data that utilize these methods. A literature survey was employed to select a cadre of codes and data libraries to be reviewed. The selection process was based on specific criteria presented in the report. Separate summaries were written for several codes (or family of codes) that provided information on the method of solution, limitations and advantages, availability, data access, ease of use, and known accuracy. For each data library, the summary covers the source of the data, applicability of these data, and known verification efforts. Finally, the report discusses the overall status of spent fuel shielding analysis techniques and attempts to illustrate areas where inaccuracy and/or uncertainty exist. The report notes the advantages and limitations of several analysis procedures and illustrates the importance of using adequate cross-section data sets. Additional work is recommended to enable final selection/validation of analysis tools that will best meet the US Department of Energy's requirements for use in developing a viable HLW management system. 188 refs., 16 figs., 27 tabs.

  16. Comparison of the 3-D Deterministic Neutron Transport Code Attila® To Measure Data, MCNP And MCNPX For The Advanced Test Reactor

    SciTech Connect

    D. Scott Lucas; D. S. Lucas

    2005-09-01

    An LDRD (Laboratory Directed Research and Development) project is underway at the Idaho National Laboratory (INL) to apply the three-dimensional multi-group deterministic neutron transport code (Attila®) to criticality, flux and depletion calculations of the Advanced Test Reactor (ATR). This paper discusses the development of Attila models for ATR, capabilities of Attila, the generation and use of different cross-section libraries, and comparisons to ATR data, MCNP, MCNPX and future applications.

  17. DESIGN PACKAGE 1D SYSTEM SAFETY ANALYSIS

    SciTech Connect

    L.R. Eisler

    1995-02-02

    The purpose of this analysis is to systematically identify and evaluate hazards related to the Yucca Mountain Project Exploratory Studies Facility (ESF) Design Package 1D, Surface Facilities, (for a list of design items included in the package 1D system safety analysis see section 3). This process is an integral part of the systems engineering process; whereby safety is considered during planning, design, testing, and construction. A largely qualitative approach was used since a radiological System Safety analysis is not required. The risk assessment in this analysis characterizes the accident scenarios associated with the Design Package 1D structures/systems/components in terms of relative risk and includes recommendations for mitigating all identified risks. The priority for recommending and implementing mitigation control features is: (1) Incorporate measures to reduce risks and hazards into the structure/system/component (S/S/C) design, (2) add safety devices and capabilities to the designs that reduce risk, (3) provide devices that detect and warn personnel of hazardous conditions, and (4) develop procedures and conduct training to increase worker awareness of potential hazards, on methods to reduce exposure to hazards, and on the actions required to avoid accidents or correct hazardous conditions. The scope of this analysis is limited to the Design Package 1D structures/systems/components (S/S/Cs) during normal operations excluding hazards occurring during maintenance and ''off normal'' operations.

  18. Deconvolution/identification techniques for 1-D transient signals

    SciTech Connect

    Goodman, D.M.

    1990-10-01

    This paper discusses a variety of nonparametric deconvolution and identification techniques that we have developed for application to 1-D transient signal problems. These methods are time-domain techniques that use direct methods for matrix inversion. Therefore, they are not appropriate for large data'' problems. These techniques involve various regularization methods and permit the use of certain kinds of a priori information in estimating the unknown. These techniques have been implemented in a package using standard FORTRAN that should make the package readily transportable to most computers. This paper is also meant to be an instruction manual for the package. 25 refs., 17 figs., 1 tab.

  19. Enhancing Solar Cell Efficiencies through 1-D Nanostructures

    PubMed Central

    2009-01-01

    The current global energy problem can be attributed to insufficient fossil fuel supplies and excessive greenhouse gas emissions resulting from increasing fossil fuel consumption. The huge demand for clean energy potentially can be met by solar-to-electricity conversions. The large-scale use of solar energy is not occurring due to the high cost and inadequate efficiencies of existing solar cells. Nanostructured materials have offered new opportunities to design more efficient solar cells, particularly one-dimensional (1-D) nanomaterials for enhancing solar cell efficiencies. These 1-D nanostructures, including nanotubes, nanowires, and nanorods, offer significant opportunities to improve efficiencies of solar cells by facilitating photon absorption, electron transport, and electron collection; however, tremendous challenges must be conquered before the large-scale commercialization of such cells. This review specifically focuses on the use of 1-D nanostructures for enhancing solar cell efficiencies. Other nanostructured solar cells or solar cells based on bulk materials are not covered in this review. Major topics addressed include dye-sensitized solar cells, quantum-dot-sensitized solar cells, and p-n junction solar cells.

  20. Accuracy of the electron transport in mcnp5 and its suitability for ionization chamber response simulations: A comparison with the egsnrc and penelope codes

    SciTech Connect

    Koivunoro, Hanna; Siiskonen, Teemu; Kotiluoto, Petri; Auterinen, Iiro; Hippelaeinen, Eero; Savolainen, Sauli

    2012-03-15

    Purpose: In this work, accuracy of the mcnp5 code in the electron transport calculations and its suitability for ionization chamber (IC) response simulations in photon beams are studied in comparison to egsnrc and penelope codes. Methods: The electron transport is studied by comparing the depth dose distributions in a water phantom subdivided into thin layers using incident energies (0.05, 0.1, 1, and 10 MeV) for the broad parallel electron beams. The IC response simulations are studied in water phantom in three dosimetric gas materials (air, argon, and methane based tissue equivalent gas) for photon beams ({sup 60}Co source, 6 MV linear medical accelerator, and mono-energetic 2 MeV photon source). Two optional electron transport models of mcnp5 are evaluated: the ITS-based electron energy indexing (mcnp5{sub ITS}) and the new detailed electron energy-loss straggling logic (mcnp5{sub new}). The electron substep length (ESTEP parameter) dependency in mcnp5 is investigated as well. Results: For the electron beam studies, large discrepancies (>3%) are observed between the mcnp5 dose distributions and the reference codes at 1 MeV and lower energies. The discrepancy is especially notable for 0.1 and 0.05 MeV electron beams. The boundary crossing artifacts, which are well known for the mcnp5{sub ITS}, are observed for the mcnp5{sub new} only at 0.1 and 0.05 MeV beam energies. If the excessive boundary crossing is eliminated by using single scoring cells, the mcnp5{sub ITS} provides dose distributions that agree better with the reference codes than mcnp5{sub new}. The mcnp5 dose estimates for the gas cavity agree within 1% with the reference codes, if the mcnp5{sub ITS} is applied or electron substep length is set adequately for the gas in the cavity using the mcnp5{sub new}. The mcnp5{sub new} results are found highly dependent on the chosen electron substep length and might lead up to 15% underestimation of the absorbed dose. Conclusions: Since the mcnp5 electron

  1. FPGA implementation of concatenated non-binary QC-LDPC codes for high-speed optical transport.

    PubMed

    Zou, Ding; Djordjevic, Ivan B

    2015-06-01

    In this paper, we propose a soft-decision-based FEC scheme that is the concatenation of a non-binary LDPC code and hard-decision FEC code. The proposed NB-LDPC + RS with overhead of 27.06% provides a superior NCG of 11.9dB at a post-FEC BER of 10-15. As a result, the proposed NB-LDPC codes represent the strong FEC candidate of soft-decision FEC for beyond 100Gb/s optical transmission systems.

  2. Development of the 3D Parallel Particle-In-Cell Code IMPACT to Simulate the Ion Beam Transport System of VENUS (Abstract)

    NASA Astrophysics Data System (ADS)

    Qiang, J.; Leitner, D.; Todd, D. S.; Ryne, R. D.

    2005-03-01

    The superconducting ECR ion source VENUS serves as the prototype injector ion source for the Rare Isotope Accelerator (RIA) driver linac. The RIA driver linac requires a great variety of high charge state ion beams with up to an order of magnitude higher intensity than currently achievable with conventional ECR ion sources. In order to design the beam line optics of the low energy beam line for the RIA front end for the wide parameter range required for the RIA driver accelerator, reliable simulations of the ion beam extraction from the ECR ion source through the ion mass analyzing system are essential. The RIA low energy beam transport line must be able to transport intense beams (up to 10 mA) of light and heavy ions at 30 keV. For this purpose, LBNL is developing the parallel 3D particle-in-cell code IMPACT to simulate the ion beam transport from the ECR extraction aperture through the analyzing section of the low energy transport system. IMPACT, a parallel, particle-in-cell code, is currently used to model the superconducting RF linac section of RIA and is being modified in order to simulate DC beams from the ECR ion source extraction. By using the high performance of parallel supercomputing we will be able to account consistently for the changing space charge in the extraction region and the analyzing section. A progress report and early results in the modeling of the VENUS source will be presented.

  3. Development of the 3D Parallel Particle-In-Cell Code IMPACT to Simulate the Ion Beam Transport System of VENUS (Abstract)

    SciTech Connect

    Qiang, J.; Leitner, D.; Todd, D.S.; Ryne, R.D.

    2005-03-15

    The superconducting ECR ion source VENUS serves as the prototype injector ion source for the Rare Isotope Accelerator (RIA) driver linac. The RIA driver linac requires a great variety of high charge state ion beams with up to an order of magnitude higher intensity than currently achievable with conventional ECR ion sources. In order to design the beam line optics of the low energy beam line for the RIA front end for the wide parameter range required for the RIA driver accelerator, reliable simulations of the ion beam extraction from the ECR ion source through the ion mass analyzing system are essential. The RIA low energy beam transport line must be able to transport intense beams (up to 10 mA) of light and heavy ions at 30 keV.For this purpose, LBNL is developing the parallel 3D particle-in-cell code IMPACT to simulate the ion beam transport from the ECR extraction aperture through the analyzing section of the low energy transport system. IMPACT, a parallel, particle-in-cell code, is currently used to model the superconducting RF linac section of RIA and is being modified in order to simulate DC beams from the ECR ion source extraction. By using the high performance of parallel supercomputing we will be able to account consistently for the changing space charge in the extraction region and the analyzing section. A progress report and early results in the modeling of the VENUS source will be presented.

  4. Centrosome Positioning in 1D Cell Migration

    NASA Astrophysics Data System (ADS)

    Adlerz, Katrina; Aranda-Espinoza, Helim

    During cell migration, the positioning of the centrosome and nucleus define a cell's polarity. For a cell migrating on a two-dimensional substrate the centrosome is positioned in front of the nucleus. Under one-dimensional confinement, however, the centrosome is positioned behind the nucleus in 60% of cells. It is known that the centrosome is positioned by CDC42 and dynein for cells moving on a 2D substrate in a wound-healing assay. It is currently unknown, however, if this is also true for cells moving under 1D confinement, where the centrosome position is often reversed. Therefore, centrosome positioning was studied in cells migrating under 1D confinement, which mimics cells migrating through 3D matrices. 3 to 5 μm fibronectin lines were stamped onto a glass substrate and cells with fluorescently labeled nuclei and centrosomes migrated on the lines. Our results show that when a cell changes directions the centrosome position is maintained. That is, when the centrosome is between the nucleus and the cell's trailing edge and the cell changes direction, the centrosome will be translocated across the nucleus to the back of the cell again. A dynein inhibitor did have an influence on centrosome positioning in 1D migration and change of directions.

  5. A 1D analysis of two high order MOC methods

    SciTech Connect

    Everson, M. S.; Forget, B.

    2012-07-01

    The work presented here provides two different methods for evaluating angular fluxes along long characteristics. One is based off a projection of the 1D transport equation onto a complete set of Legendre polynomials, while the other uses the 1D integral transport equation to evaluate the angular flux values at specific points along each track passing through a cell. The Moment Long Characteristic (M-LC) method is shown to provide 2(P+1) spatial convergence and significant gains in accuracy with the addition of only a few spatial degrees of freedom. The M-LC method, though, is shown to be ill-conditioned at very high order and for optically thin geometries. The Point Long Characteristic (P-LC) method, while less accurate, significantly improves stability to problems with optically thin cells. The P-LC method is also more flexible, allowing for extra angular flux evaluations along a given track to give a more accurate representation of the shape along each track. This is at the expense of increasing the degrees of freedom of the system, though, and requires an increase in memory storage. This work concludes that both may be used simultaneously within the same geometry to provide the best mix of accuracy and stability possible. (authors)

  6. Transport studies in high-performance field reversed configuration plasmas

    NASA Astrophysics Data System (ADS)

    Gupta, S.; Barnes, D. C.; Dettrick, S. A.; Trask, E.; Tuszewski, M.; Deng, B. H.; Gota, H.; Gupta, D.; Hubbard, K.; Korepanov, S.; Thompson, M. C.; Zhai, K.; Tajima, T.

    2016-05-01

    A significant improvement of field reversed configuration (FRC) lifetime and plasma confinement times in the C-2 plasma, called High Performance FRC regime, has been observed with neutral beam injection (NBI), improved edge stability, and better wall conditioning [Binderbauer et al., Phys. Plasmas 22, 056110 (2015)]. A Quasi-1D (Q1D) fluid transport code has been developed and employed to carry out transport analysis of such C-2 plasma conditions. The Q1D code is coupled to a Monte-Carlo code to incorporate the effect of fast ions, due to NBI, on the background FRC plasma. Numerically, the Q1D transport behavior with enhanced transport coefficients (but with otherwise classical parametric dependencies) such as 5 times classical resistive diffusion, classical thermal ion conductivity, 20 times classical electron thermal conductivity, and classical fast ion behavior fit with the experimentally measured time evolution of the excluded flux radius, line-integrated density, and electron/ion temperature. The numerical study shows near sustainment of poloidal flux for nearly 1 ms in the presence of NBI.

  7. Guidelines for selecting codes for ground-water transport modeling of low-level waste burial sites. Volume 1. Guideline approach

    SciTech Connect

    Simmons, C.S.; Cole, C.R.

    1985-05-01

    This document was written for the National Low-Level Waste Management Program to provide guidance for managers and site operators who need to select ground-water transport codes for assessing shallow-land burial site performance. The guidance given in this report also serves the needs of applications-oriented users who work under the direction of a manager or site operator. The guidelines are published in two volumes designed to support the needs of users having different technical backgrounds. An executive summary, published separately, gives managers and site operators an overview of the main guideline report. This volume includes specific recommendations for decision-making managers and site operators on how to use these guidelines. The more detailed discussions about the code selection approach are provided. 242 refs., 6 figs.

  8. Development of Tritium Permeation Analysis Code and Tritium Transport in a High Temperature Gas-Cooled Reactor Coupled with Hydrogen Production System

    SciTech Connect

    Chang H. Oh; Eung S. Kim; Mike Patterson

    2010-06-01

    Abstract – A tritium permeation analyses code (TPAC) was developed by Idaho National Laboratory for the purpose of analyzing tritium distributions in very high temperature reactor (VHTR) systems, including integrated hydrogen production systems. A MATLAB SIMULINK software package was used in developing the code. The TPAC is based on the mass balance equations of tritium-containing species and various forms of hydrogen coupled with a variety of tritium sources, sinks, and permeation models. In the TPAC, ternary fission and neutron reactions with 6Li, 7Li 10B, and 3He were taken into considerations as tritium sources. Purification and leakage models were implemented as main tritium sinks. Permeation of tritium and H2 through pipes, vessels, and heat exchangers were considered as main tritium transport paths. In addition, electroyzer and isotope exchange models were developed for analyzing hydrogen production systems, including high temperature electrolysis and sulfur-iodine processes.

  9. Inclusion of photon production and transport and (e/sup +/e/sup /minus//) pair production in a particle-in-cell code for astrophysical applications

    SciTech Connect

    Sulkanen, M.E.; Gisler, G.R.

    1989-01-01

    This present study constitutes the first attempt to include, in a particle-in-cell code, the effects of radiation losses, photon production and transport, and charged-particle production by photons scattering in an intense background magnetic field. We discuss the physics and numerical issues that had to be addressed in including these effects in the ISIS code. Then we present a test simulation of the propagation of a pulse of high-energy photons across an intense magnetic field using this modified version of ISIS. This simulation demonstrates dissipation of the photon pulse with charged-particle production, emission of secondary synchrotron and curvature photons and the concomitant momentum dissipation of the charged particles, and subsequent production of lower-energy pairs. 5 refs.

  10. NSCool: Neutron star cooling code

    NASA Astrophysics Data System (ADS)

    Page, Dany

    2016-09-01

    NSCool is a 1D (i.e., spherically symmetric) neutron star cooling code written in Fortran 77. The package also contains a series of EOSs (equation of state) to build stars, a series of pre-built stars, and a TOV (Tolman- Oppenheimer-Volkoff) integrator to build stars from an EOS. It can also handle “strange stars” that have a huge density discontinuity between the quark matter and the covering thin baryonic crust. NSCool solves the heat transport and energy balance equations in whole GR, resulting in a time sequence of temperature profiles (and, in particular, a Teff - age curve). Several heating processes are included, and more can easily be incorporated. In particular it can evolve a star undergoing accretion with the resulting deep crustal heating, under a steady or time-variable accretion rate. NSCool is robust, very fast, and highly modular, making it easy to add new subroutines for new processes.

  11. INFIL1D: a quasi-analytical model for simulating one-dimensional, constant flux infiltration

    SciTech Connect

    Simmons, C.S.; McKeon, T.J.

    1984-04-01

    The program INFIL1D is designed to calculate approximate wetting-front advance into an unsaturated, uniformly moist, homogeneous soil profile, under constant surface-flux conditions. The code is based on a quasi-analytical method, which utilizes an assumed invariant functional relationship between reduced (normalized) flux and water content. The code uses general hydraulic property data in tabular form to simulate constant surface-flux infiltration. 10 references, 4 figures.

  12. The FC-1D: The profitable alternative Flying Circus Commercial Aviation Group

    NASA Technical Reports Server (NTRS)

    Meza, Victor J.; Alvarez, Jaime; Harrington, Brook; Lujan, Michael A.; Mitlyng, David; Saroughian, Andy; Silva, Alex; Teale, Tim

    1994-01-01

    The FC-1D was designed as an advanced solution for a low cost commercial transport meeting or exceeding all of the 1993/1994 AIAA/Lockheed request for proposal requirements. The driving philosophy behind the design of the FC-1D was the reduction of airline direct operating costs. Every effort was made during the design process to have the customer in mind. The Flying Circus Commercial Aviation Group targeted reductions in drag, fuel consumption, manufacturing costs, and maintenance costs. Flying Circus emphasized cost reduction throughout the entire design program. Drag reduction was achieved by implementation of the aft nacelle wing configuration to reduce cruise drag and increase cruise speeds. To reduce induced drag, rather than increasing the wing span of the FC-1D, spiroids were included in the efficient wing design. Profile and friction drag are reduced by using riblets in place of paint around the fuselage and empennage of the FC-1D. Choosing a single aisle configuration enabled the Flying Circus to optimize the fuselage diameter. Thus, reducing fuselage drag while gaining high structural efficiency. To further reduce fuel consumption a weight reduction program was conducted through the use of composite materials. An additional quality of the FC-1D is its design for low cost manufacturing and assembly. As a result of this design attribute, the FC-1D will have fewer parts which reduces weight as well as maintenance and assembly costs. The FC-1D is affordable and effective, the apex of commercial transport design.

  13. MCNP code

    SciTech Connect

    Cramer, S.N.

    1984-01-01

    The MCNP code is the major Monte Carlo coupled neutron-photon transport research tool at the Los Alamos National Laboratory, and it represents the most extensive Monte Carlo development program in the United States which is available in the public domain. The present code is the direct descendent of the original Monte Carlo work of Fermi, von Neumaum, and Ulam at Los Alamos in the 1940s. Development has continued uninterrupted since that time, and the current version of MCNP (or its predecessors) has always included state-of-the-art methods in the Monte Carlo simulation of radiation transport, basic cross section data, geometry capability, variance reduction, and estimation procedures. The authors of the present code have oriented its development toward general user application. The documentation, though extensive, is presented in a clear and simple manner with many examples, illustrations, and sample problems. In addition to providing the desired results, the output listings give a a wealth of detailed information (some optional) concerning each state of the calculation. The code system is continually updated to take advantage of advances in computer hardware and software, including interactive modes of operation, diagnostic interrupts and restarts, and a variety of graphical and video aids.

  14. A 1-D dusty plasma photonic crystal

    SciTech Connect

    Mitu, M. L.; Ticoş, C. M.; Toader, D.; Banu, N.; Scurtu, A.

    2013-09-21

    It is demonstrated numerically that a 1-D plasma crystal made of micron size cylindrical dust particles can, in principle, work as a photonic crystal for terahertz waves. The dust rods are parallel to each other and arranged in a linear string forming a periodic structure of dielectric-plasma regions. The dispersion equation is found by solving the waves equation with the boundary conditions at the dust-plasma interface and taking into account the dielectric permittivity of the dust material and plasma. The wavelength of the electromagnetic waves is in the range of a few hundred microns, close to the interparticle separation distance. The band gaps of the 1-D plasma crystal are numerically found for different types of dust materials, separation distances between the dust rods and rod diameters. The distance between levitated dust rods forming a string in rf plasma is shown experimentally to vary over a relatively wide range, from 650 μm to about 1350 μm, depending on the rf power fed into the discharge.

  15. Modeling of Dose Distribution for a Proton Beam Delivering System with the use of the Multi-Particle Transport Code 'Fluka'

    SciTech Connect

    Mumot, Marta; Agapov, Alexey

    2007-11-26

    We have developed a new delivering system for hadron therapy which uses a multileaf collimator and a range shifter. We simulate our delivering beam system with the multi-particle transport code 'Fluka'. From these simulations we obtained information about the dose distributions, about stars generated in the delivering system elements and also information about the neutron flux. All the informations obtained were analyzed from the point of view of radiation protection, homogeneity of beam delivery to patient body, and also in order to improve some modifiers used.

  16. How to Find a Bug in Ten Thousand Lines Transport Solver? Outline of Experiences from AN Advection-Diffusion Code Verification

    NASA Astrophysics Data System (ADS)

    Zamani, K.; Bombardelli, F.

    2011-12-01

    Almost all natural phenomena on Earth are highly nonlinear. Even simplifications to the equations describing nature usually end up being nonlinear partial differential equations. Transport (ADR) equation is a pivotal equation in atmospheric sciences and water quality. This nonlinear equation needs to be solved numerically for practical purposes so academicians and engineers thoroughly rely on the assistance of numerical codes. Thus, numerical codes require verification before they are utilized for multiple applications in science and engineering. Model verification is a mathematical procedure whereby a numerical code is checked to assure the governing equation is properly solved as it is described in the design document. CFD verification is not a straightforward and well-defined course. Only a complete test suite can uncover all the limitations and bugs. Results are needed to be assessed to make a distinction between bug-induced-defect and innate limitation of a numerical scheme. As Roache (2009) said, numerical verification is a state-of-the-art procedure. Sometimes novel tricks work out. This study conveys the synopsis of the experiences we gained during a comprehensive verification process which was done for a transport solver. A test suite was designed including unit tests and algorithmic tests. Tests were layered in complexity in several dimensions from simple to complex. Acceptance criteria defined for the desirable capabilities of the transport code such as order of accuracy, mass conservation, handling stiff source term, spurious oscillation, and initial shape preservation. At the begining, mesh convergence study which is the main craft of the verification is performed. To that end, analytical solution of ADR equation gathered. Also a new solution was derived. In the more general cases, lack of analytical solution could be overcome through Richardson Extrapolation and Manufactured Solution. Then, two bugs which were concealed during the mesh convergence

  17. The Transient 3-D Transport Coupled Code TORT-TD/ATTICA3D for High-Fidelity Pebble-Bed HTGR Analyses

    NASA Astrophysics Data System (ADS)

    Seubert, Armin; Sureda, Antonio; Lapins, Janis; Bader, Johannes; Laurien, Eckart

    2012-01-01

    This article describes the 3D discrete ordinates-based coupled code system TORT-TD/ATTICA3D that aims at steady state and transient analyses of pebble-bed high-temperature gas cooled reactors. In view of increasing computing power, the application of time-dependent neutron transport methods becomes feasible for best estimate evaluations of safety margins. The calculation capabilities of TORT-TD/ATTICA3D are presented along with the coupling approach, with focus on the time-dependent neutron transport features of TORT-TD. Results obtained for the OECD/NEA/NSC PBMR-400 benchmark demonstrate the transient capabilities of TORT-TD/ATTICA3D.

  18. Status of the Development of an Embedded Transport Treatment of Control Rods and of Radial Flux Expansion in Cylindrical Nodal Diffusion Codes

    SciTech Connect

    Frederick N. Gleicher II; Abderrafi M. Ougouag

    2009-09-01

    A new diffusion-transport hybrid nodal method in R-Z is presented that can effectively treat non-multiplying zones in pebble bed reactors. The new method seamlessly combines the analytic coarse mesh finite difference (CMFD) diffusion formulation and a transport theory based response matrix formulation while retaining the properties and structure of the CMFD diffusion solver. The resulting combined formulation is utilized in selected non-multiplying nodes to capture angular effects on the flux. Test results indicate that the method has been implemented correctly into the CYNOD reactor kinetics code. This document also presents a status report on the development of a better source approximation for the Green’s function nodal solution in the radial direction of cylindrical geometry. The basic theory has been developed, including obtaining polynomials that are orthonormal over the domain of integration and the derivation of approximately half of the required matrix elements (single and double integrals in the source expansions).

  19. 1D-VAR Retrieval Using Superchannels

    NASA Technical Reports Server (NTRS)

    Liu, Xu; Zhou, Daniel; Larar, Allen; Smith, William L.; Schluessel, Peter; Mango, Stephen; SaintGermain, Karen

    2008-01-01

    Since modern ultra-spectral remote sensors have thousands of channels, it is difficult to include all of them in a 1D-var retrieval system. We will describe a physical inversion algorithm, which includes all available channels for the atmospheric temperature, moisture, cloud, and surface parameter retrievals. Both the forward model and the inversion algorithm compress the channel radiances into super channels. These super channels are obtained by projecting the radiance spectra onto a set of pre-calculated eigenvectors. The forward model provides both super channel properties and jacobian in EOF space directly. For ultra-spectral sensors such as Infrared Atmospheric Sounding Interferometer (IASI) and the NPOESS Airborne Sounder Testbed Interferometer (NAST), a compression ratio of more than 80 can be achieved, leading to a significant reduction in computations involved in an inversion process. Results will be shown applying the algorithm to real IASI and NAST data.

  20. Activities of the Radiation Shielding Information Center and a report on codes/data for high energy radiation transport

    SciTech Connect

    Roussin, R.W.

    1993-01-01

    From the very early days in its history Radiation Shielding Information Center (RSIC) has been involved with high energy radiation transport. The National Aeronautics and Space Administration was an early sponsor of RSIC until the completion of the Apollo Moon Exploration Program. In addition, the intranuclear cascade work of Bertini at Oak Ridge National Laboratory provided valuable resources which were made available through RSIC. Over the years, RSIC has had interactions with many of the developers of high energy radiation transport computing technology and data libraries and has been able to collect and disseminate this technology. The current status of this technology will be reviewed and prospects for new advancements will be examined.

  1. Activities of the Radiation Shielding Information Center and a report on codes/data for high energy radiation transport

    SciTech Connect

    Roussin, R.W.

    1994-10-01

    From the very early days in its history RSIC has been involved with high energy radiation transport. The National Aeronautics and Space Administration was an early sponsor of RSIC until the completion of the Apollo Moon Exploration Program. In addition, the intranuclear cascade work of Bertini at Oak Ridge National Laboratory provided valuable resources which were made available through RSIC. Over the years, RSIC has had interactions with many of the developers of high energy radiation transport computing technology and data libraries and has been able to collect and disseminate this technology. The current status of this technology will be reviewed and prospects for new advancements will be examined.

  2. Activities of the Radiation Shielding Information Center and a report on codes/data for high energy radiation transport

    SciTech Connect

    Roussin, R.W.

    1993-03-01

    From the very early days in its history Radiation Shielding Information Center (RSIC) has been involved with high energy radiation transport. The National Aeronautics and Space Administration was an early sponsor of RSIC until the completion of the Apollo Moon Exploration Program. In addition, the intranuclear cascade work of Bertini at Oak Ridge National Laboratory provided valuable resources which were made available through RSIC. Over the years, RSIC has had interactions with many of the developers of high energy radiation transport computing technology and data libraries and has been able to collect and disseminate this technology. The current status of this technology will be reviewed and prospects for new advancements will be examined.

  3. Simulation of PWR plant by a new version of TRAC-PF1 code including a three-dimensional neutronic model and a transport boron model

    SciTech Connect

    Alloggio, G.; Brega, E.; Basile, D.; Guandalini, R.; Pollachini, L.

    1996-08-01

    This paper is aimed at presenting a solution method for time-dependent problems coupling thermal-hydraulic behavior and neutronic changes during selected transients in Pressurized Water Reactors. A two-group three-dimensional reactor kinetics model, based on the Analytical Nodal Method with a detailed feedback model, has been implemented in TRAC-PF1 code replacing the original point-kinetics approximation. A geometry conversion was done to match, in the core discretization, the cylindrical geometry of the TRAC-PF1 with the Cartesian geometry of the three-dimensional neutronic model. In this version of TRAC-PFI, named TRAC-EN for IBM computers, a Boron transport model has been implemented. The transient Boron concentration is computed from a Boron mass balance after the coolant mass, energy and momentum balances have been completed. In order to evaluate the new code capabilities, a model of the two-loops 600 MW Westinghouse reactor was implemented. Some specific PWR transients that exhibit interesting nuclear and thermal-hydraulic responses, e.g., control rod ejection and pressurization transients, are presented. To check the Boron transport model, a local Boron dilution transient was analyzed. The results obtained by using the space and time dependent neutronic model can not be predicted by point kinetics approximation. Furthermore, some events that apparently concern only the core, are also involving the primary circuit the responses of which can not be neglected because they affect the neutronic behavior.

  4. FECWASTE: user's manual of a Finite-Element Code for simulating WASTE transport through saturated-unsaturated porous media. Environmental Sciences Division Publication No. 1907

    SciTech Connect

    Yeh, G.T.; Strand, R.H.

    1982-12-01

    This report presents the user's manual of FECWASTE, a Finite-Element Code for simulating WASTE transport through saturated-unsaturated porous media. The code is designed for generic application. For each site-specific application, 12 control cards are required to specify the size of data arrays and 6 control cards are used to assign the control numbers in the main program. In addition, prior to the execution of FECWASTE, FECWATER must be executed to yield the groundwater flow variables including the pressure head, total head, moisture content, and Darcy's velocity components. Input data to the computer code includes the program control indices, properties of the porous media, parameters of waste-media interaction, the geometry in the form of elements and nodes, boundary and initial conditions, and waste characteristics. Principal output includes the spatial distribution of the concentration and material fluxes at any desired time. Fluxes through various types of boundaries, material accumulated in the matrix and solution, and material transformed through decay and chemical, physical, and biological degradation are also the output, if desired.

  5. Industrial Code Development

    NASA Technical Reports Server (NTRS)

    Shapiro, Wilbur

    1991-01-01

    The industrial codes will consist of modules of 2-D and simplified 2-D or 1-D codes, intended for expeditious parametric studies, analysis, and design of a wide variety of seals. Integration into a unified system is accomplished by the industrial Knowledge Based System (KBS), which will also provide user friendly interaction, contact sensitive and hypertext help, design guidance, and an expandable database. The types of analysis to be included with the industrial codes are interfacial performance (leakage, load, stiffness, friction losses, etc.), thermoelastic distortions, and dynamic response to rotor excursions. The first three codes to be completed and which are presently being incorporated into the KBS are the incompressible cylindrical code, ICYL, and the compressible cylindrical code, GCYL.

  6. Comparison of a 3-D multi-group SN particle transport code with Monte Carlo for intracavitary brachytherapy of the cervix uteri.

    PubMed

    Gifford, Kent A; Wareing, Todd A; Failla, Gregory; Horton, John L; Eifel, Patricia J; Mourtada, Firas

    2009-12-03

    A patient dose distribution was calculated by a 3D multi-group S N particle transport code for intracavitary brachytherapy of the cervix uteri and compared to previously published Monte Carlo results. A Cs-137 LDR intracavitary brachytherapy CT data set was chosen from our clinical database. MCNPX version 2.5.c, was used to calculate the dose distribution. A 3D multi-group S N particle transport code, Attila version 6.1.1 was used to simulate the same patient. Each patient applicator was built in SolidWorks, a mechanical design package, and then assembled with a coordinate transformation and rotation for the patient. The SolidWorks exported applicator geometry was imported into Attila for calculation. Dose matrices were overlaid on the patient CT data set. Dose volume histograms and point doses were compared. The MCNPX calculation required 14.8 hours, whereas the Attila calculation required 22.2 minutes on a 1.8 GHz AMD Opteron CPU. Agreement between Attila and MCNPX dose calculations at the ICRU 38 points was within +/- 3%. Calculated doses to the 2 cc and 5 cc volumes of highest dose differed by not more than +/- 1.1% between the two codes. Dose and DVH overlays agreed well qualitatively. Attila can calculate dose accurately and efficiently for this Cs-137 CT-based patient geometry. Our data showed that a three-group cross-section set is adequate for Cs-137 computations. Future work is aimed at implementing an optimized version of Attila for radiotherapy calculations.

  7. A Computer Code for 2-D Transport Calculations in x-y Geometry Using the Interface Current Method.

    1990-12-01

    Version 00 RICANT performs 2-dimensional neutron transport calculations in x-y geometry using the interface current method. In the interface current method, the angular neutron currents crossing region surfaces are expanded in terms of the Legendre polynomials in the two half-spaces made by the region surfaces.

  8. Transportation.

    ERIC Educational Resources Information Center

    Crank, Ron

    This instructional unit is one of 10 developed by students on various energy-related areas that deals specifically with transportation and energy use. Its objective is for the student to be able to discuss the implication of energy usage as it applies to the area of transportation. Some topics covered are efficiencies of various transportation…

  9. STREAM II-V5: REVISION OF STREAM II-V4 AQUEOUS TRANSPORT CODE TO ACCOUNT FOR THE EFFECTS OF RAINFALL EVENTS

    SciTech Connect

    Chen, K.

    2011-05-18

    STREAM II is an aqueous transport model developed by the Savannah River National Laboratory (SRNL) for use in the Savannah River Site (SRS) emergency response program. The transport model of the Water Quality Analysis Simulation Program (WASP) is used by STREAM II to perform contaminant transport calculations. WASP5 is a US Environmental Protection Agency (EPA) water quality analysis program that simulates contaminant transport and fate through surface water. A recent version of the code (STREAM II-V4) predicts peak concentration and peak concentration arrival time at downstream locations for releases from the SRS facilities to the Savannah River. The input flows for STREAM II-V4 are derived from the historical flow records measured by the United States Geological Survey (USGS). The stream flow for STREAM II-V4 is fixed and the flow only varies with the month in which the releases are taking place. Therefore, the effects of flow surge due to a severe storm are not accounted for by STREAM IIV4. STREAM II-V5 is an upgraded version which accounts for the effects of a storm event. The revised model finds the proper stream inlet flow based on the total rainfall and rainfall duration as input by the user. STREAM II-V5 then adjusts the stream segment volumes (cross sections) based on the stream inlet flow. The rainfall based stream flow and the adjusted stream segment volumes are then used for contaminant transport calculations. This paper will discuss the required modifications to STREAM II and a comparison of results between the older and newer versions for an example involving a rainfall event.

  10. Calreticulin Controls the Rate of Assembly of CD1d Molecules in the Endoplasmic Reticulum*

    PubMed Central

    Zhu, Yajuan; Zhang, Wei; Veerapen, Natacha; Besra, Gurdyal; Cresswell, Peter

    2010-01-01

    CD1d is an MHC class I-like molecule comprised of a transmembrane glycoprotein (heavy chain) associated with β2-microglobulin (β2m) that presents lipid antigens to NKT cells. Initial folding of the heavy chain involves its glycan-dependent association with calreticulin (CRT), calnexin (CNX), and the thiol oxidoreductase ERp57, and is followed by assembly with β2m to form the heterodimer. Here we show that in CRT-deficient cells CD1d heavy chains convert to β2m-associated dimers at an accelerated rate, indicating faster folding of the heavy chain, while the rate of intracellular transport after assembly is unaffected. Unlike the situation with MHC class I molecules, antigen presentation by CD1d is not impaired in the absence of CRT. Instead, there are elevated levels of stable and functional CD1d on the surface of CRT-deficient cells. Association of the heavy chains with the ER chaperones Grp94 and Bip is observed in the absence of CRT, and these may replace CRT in mediating CD1d folding and assembly. ER retention of free CD1d heavy chains is impaired in CRT-deficient cells, allowing their escape and subsequent expression on the plasma membrane. However, these free heavy chains are rapidly internalized and degraded in lysosomes, indicating that β2m association is required for the exceptional resistance of CD1d to lysosomal degradation that is normally observed. PMID:20861015

  11. Fabrication and characterization of hexagonally patterned quasi-1D ZnO nanowire arrays

    PubMed Central

    2014-01-01

    Quasi-one-dimensional (quasi-1D) ZnO nanowire arrays with hexagonal pattern have been successfully synthesized via the vapor transport process without any metal catalyst. By utilizing polystyrene microsphere self-assembled monolayer, sol–gel-derived ZnO thin films were used as the periodic nucleation sites for the growth of ZnO nanowires. High-quality quasi-1D ZnO nanowires were grown from nucleation sites, and the original hexagonal periodicity is well-preserved. According to the experimental results, the vapor transport solid condensation mechanism was proposed, in which the sol–gel-derived ZnO film acting as a seed layer for nucleation. This simple method provides a favorable way to form quasi-1D ZnO nanostructures applicable to diverse fields such as two-dimensional photonic crystal, nanolaser, sensor arrays, and other optoelectronic devices. PMID:24521308

  12. Fabrication and characterization of hexagonally patterned quasi-1D ZnO nanowire arrays

    NASA Astrophysics Data System (ADS)

    Kuo, Shou-Yi; Lin, Hsin-I.

    2014-02-01

    Quasi-one-dimensional (quasi-1D) ZnO nanowire arrays with hexagonal pattern have been successfully synthesized via the vapor transport process without any metal catalyst. By utilizing polystyrene microsphere self-assembled monolayer, sol-gel-derived ZnO thin films were used as the periodic nucleation sites for the growth of ZnO nanowires. High-quality quasi-1D ZnO nanowires were grown from nucleation sites, and the original hexagonal periodicity is well-preserved. According to the experimental results, the vapor transport solid condensation mechanism was proposed, in which the sol-gel-derived ZnO film acting as a seed layer for nucleation. This simple method provides a favorable way to form quasi-1D ZnO nanostructures applicable to diverse fields such as two-dimensional photonic crystal, nanolaser, sensor arrays, and other optoelectronic devices.

  13. Fabrication and characterization of hexagonally patterned quasi-1D ZnO nanowire arrays.

    PubMed

    Kuo, Shou-Yi; Lin, Hsin-I

    2014-01-01

    Quasi-one-dimensional (quasi-1D) ZnO nanowire arrays with hexagonal pattern have been successfully synthesized via the vapor transport process without any metal catalyst. By utilizing polystyrene microsphere self-assembled monolayer, sol-gel-derived ZnO thin films were used as the periodic nucleation sites for the growth of ZnO nanowires. High-quality quasi-1D ZnO nanowires were grown from nucleation sites, and the original hexagonal periodicity is well-preserved. According to the experimental results, the vapor transport solid condensation mechanism was proposed, in which the sol-gel-derived ZnO film acting as a seed layer for nucleation. This simple method provides a favorable way to form quasi-1D ZnO nanostructures applicable to diverse fields such as two-dimensional photonic crystal, nanolaser, sensor arrays, and other optoelectronic devices. PMID:24521308

  14. User's manual for ONEDANT: a code package for one-dimensional, diffusion-accelerated, neutral-particle transport

    SciTech Connect

    O'Dell, R.D.; Brinkley, F.W. Jr.; Marr, D.R.

    1982-02-01

    ONEDANT is designed for the CDC-7600, but the program has been implemented and run on the IBM-370/190 and CRAY-I computers. ONEDANT solves the one-dimensional multigroup transport equation in plane, cylindrical, spherical, and two-angle plane geometries. Both regular and adjoint, inhomogeneous and homogeneous (k/sub eff/ and eigenvalue search) problems subject to vacuum, reflective, periodic, white, albedo, or inhomogeneous boundary flux conditions are solved. General anisotropic scattering is allowed and anisotropic inhomogeneous sources are permitted. ONEDANT numerically solves the one-dimensional, multigroup form of the neutral-particle, steady-state form of the Boltzmann transport equation. The discrete-ordinates approximation is used for treating the angular variation of the particle distribution and the diamond-difference scheme is used for phase space discretization. Negative fluxes are eliminated by a local set-to-zero-and-correct algorithm. A standard inner (within-group) iteration, outer (energy-group-dependent source) iteration technique is used. Both inner and outer iterations are accelerated using the diffusion synthetic acceleration method. (WHK)

  15. User's guide for TWODANT: a code package for two-dimensional, diffusion-accelerated, neutral-particle transport. Revision 1

    SciTech Connect

    Alcouffe, R E; Brinkley, F W; Marr, D R; O'Dell, R D

    1984-10-01

    TWODANT solves the two-dimensional multigroup transport equation in x-y, r-z, and r-theta geometries. Both regular and adjoint, inhomogeneous (fixed source and homogeneous (k-effective and eigenvalue search)) problems subject to vacuum, reflective, periodic, white, or inhomogeneous boundary flux conditions are solved. General anisotropic scattering is allowed and anisotropic inhomogeneous sources are permitted. TWODANT numerically solves the two-dimensional multigroup form of the neutral-particle, steady-state Boltzmann transport equation. The discrete-ordinates form of approximation is used for treating the angular variation of the particle distribution and the diamond-difference scheme is used for space-angle discretization. Negative fluxes are eliminated by a local set-to-zero-and-correct algorithm. A standard inner (within-group) iteration, outer (energy-group-dependent source) iteration technique is used. Both inner and outer iterations are accelerated using the diffusion synthetic acceleration method. The diffusion solver uses the multigrid method and Chebychev acceleration of the fission source.

  16. Task 3: PNNL Visit by JAEA Researchers to Participate in TODAM Code Applications to Fukushima Rivers and to Evaluate the Feasibility of Adaptation of FLESCOT Code to Simulate Radionuclide Transport in the Pacific Ocean Coastal Water Around Fukushima

    SciTech Connect

    Onishi, Yasuo

    2013-03-29

    Four JAEA researchers visited PNNL for two weeks in February, 2013 to learn the PNNL-developed, unsteady, one-dimensional, river model, TODAM and the PNNL-developed, time-dependent, three dimensional, coastal water model, FLESCOT. These codes predict sediment and contaminant concentrations by accounting sediment-radionuclide interactions, e.g., adsorption/desorption and transport-deposition-resuspension of sediment-sorbed radionuclides. The objective of the river and coastal water modeling is to simulate • 134Cs and 137Cs migration in Fukushima rivers and the coastal water, and • their accumulation in the river and ocean bed along the Fukushima coast. Forecasting the future cesium behavior in the river and coastal water under various scenarios would enable JAEA to assess the effectiveness of various on-land remediation activities and if required, possible river and coastal water clean-up operations to reduce the contamination of the river and coastal water, agricultural products, fish and other aquatic biota. PNNL presented the following during the JAEA visit to PNNL: • TODAM and FLESCOT’s theories and mathematical formulations • TODAM and FLESCOT model structures • Past TODAM and FLESCOT applications • Demonstrating these two codes' capabilities by applying them to simple hypothetical river and coastal water cases. • Initial application of TODAM to the Ukedo River in Fukushima and JAEA researchers' participation in its modeling. PNNL also presented the relevant topics relevant to Fukushima environmental assessment and remediation, including • PNNL molecular modeling and EMSL computer facilities • Cesium adsorption/desorption characteristics • Experiences of connecting molecular science research results to macro model applications to the environment • EMSL tour • Hanford Site road tour. PNNL and JAEA also developed future course of actions for joint research projects on the Fukushima environmental and remediation assessments.

  17. 1D-1D Coulomb drag in a 6 Million Mobility Bi-layer Heterostructure

    NASA Astrophysics Data System (ADS)

    Bilodeau, Simon; Laroche, Dominique; Xia, Jian-Sheng; Lilly, Mike; Reno, John; Pfeiffer, Loren; West, Ken; Gervais, Guillaume

    We report Coulomb drag measurements in vertically-coupled quantum wires. The wires are fabricated in GaAs/AlGaAs bilayer heterostructures grown from two different MBE chambers: one at Sandia National Laboratories (1.2M mobility), and the other at Princeton University (6M mobility). The previously observed positive and negative drag signals are seen in both types of devices, demonstrating the robustness of the result. However, attempts to determine the temperature dependence of the drag signal in the 1D regime proved challenging in the higher mobility heterostructure (Princeton), in part because of difficulties in aligning the wires within the same transverse subband configuration. Nevertheless, this work, performed at the Microkelvin laboratory of the University of Florida, is an important proof-of-concept for future investigations of the temperature dependence of the 1D-1D drag signal down to a few mK. Such an experiment could confirm the Luttinger charge density wave interlocking predicted to occur in the wires. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's National Nuclear Security Administration under Contract DE-AC04-94AL8500.

  18. Development of a hybrid deterministic/stochastic method for 1D nuclear reactor kinetics

    SciTech Connect

    Terlizzi, Stefano; Dulla, Sandra; Ravetto, Piero; Rahnema, Farzad; Zhang, Dingkang

    2015-12-31

    A new method has been implemented for solving the time-dependent neutron transport equation efficiently and accurately. This is accomplished by coupling the hybrid stochastic-deterministic steady-state coarse-mesh radiation transport (COMET) method [1,2] with the new predictor-corrector quasi-static method (PCQM) developed at Politecnico di Torino [3]. In this paper, the coupled method is implemented and tested in 1D slab geometry.

  19. Development of a hybrid deterministic/stochastic method for 1D nuclear reactor kinetics

    NASA Astrophysics Data System (ADS)

    Terlizzi, Stefano; Rahnema, Farzad; Zhang, Dingkang; Dulla, Sandra; Ravetto, Piero

    2015-12-01

    A new method has been implemented for solving the time-dependent neutron transport equation efficiently and accurately. This is accomplished by coupling the hybrid stochastic-deterministic steady-state coarse-mesh radiation transport (COMET) method [1,2] with the new predictor-corrector quasi-static method (PCQM) developed at Politecnico di Torino [3]. In this paper, the coupled method is implemented and tested in 1D slab geometry.

  20. SU-F-18C-09: Assessment of OSL Dosimeter Technology in the Validation of a Monte Carlo Radiation Transport Code for CT Dosimetry

    SciTech Connect

    Carver, D; Kost, S; Pickens, D; Price, R; Stabin, M

    2014-06-15

    Purpose: To assess the utility of optically stimulated luminescent (OSL) dosimeter technology in calibrating and validating a Monte Carlo radiation transport code for computed tomography (CT). Methods: Exposure data were taken using both a standard CT 100-mm pencil ionization chamber and a series of 150-mm OSL CT dosimeters. Measurements were made at system isocenter in air as well as in standard 16-cm (head) and 32-cm (body) CTDI phantoms at isocenter and at the 12 o'clock positions. Scans were performed on a Philips Brilliance 64 CT scanner for 100 and 120 kVp at 300 mAs with a nominal beam width of 40 mm. A radiation transport code to simulate the CT scanner conditions was developed using the GEANT4 physics toolkit. The imaging geometry and associated parameters were simulated for each ionization chamber and phantom combination. Simulated absorbed doses were compared to both CTDI{sub 100} values determined from the ion chamber and to CTDI{sub 100} values reported from the OSLs. The dose profiles from each simulation were also compared to the physical OSL dose profiles. Results: CTDI{sub 100} values reported by the ion chamber and OSLs are generally in good agreement (average percent difference of 9%), and provide a suitable way to calibrate doses obtained from simulation to real absorbed doses. Simulated and real CTDI{sub 100} values agree to within 10% or less, and the simulated dose profiles also predict the physical profiles reported by the OSLs. Conclusion: Ionization chambers are generally considered the standard for absolute dose measurements. However, OSL dosimeters may also serve as a useful tool with the significant benefit of also assessing the radiation dose profile. This may offer an advantage to those developing simulations for assessing radiation dosimetry such as verification of spatial dose distribution and beam width.

  1. Deletion of the Rab GAP Tbc1d1 modifies glucose, lipid, and energy homeostasis in mice.

    PubMed

    Hargett, Stefan R; Walker, Natalie N; Hussain, Syed S; Hoehn, Kyle L; Keller, Susanna R

    2015-08-01

    Tbc1d1 is a Rab GTPase-activating protein (GAP) implicated in regulating intracellular retention and cell surface localization of the glucose transporter GLUT4 and thus glucose uptake in a phosphorylation-dependent manner. Tbc1d1 is most abundant in skeletal muscle but is expressed at varying levels among different skeletal muscles. Previous studies with male Tbc1d1-deficient (Tbc1d1(-/-)) mice on standard and high-fat diets established a role for Tbc1d1 in glucose, lipid, and energy homeostasis. Here we describe similar, but also additional abnormalities in male and female Tbc1d1(-/-) mice. We corroborate that Tbc1d1 loss leads to skeletal muscle-specific and skeletal muscle type-dependent abnormalities in GLUT4 expression and glucose uptake in female and male mice. Using subcellular fractionation, we show that Tbc1d1 controls basal intracellular GLUT4 retention in large skeletal muscles. However, cell surface labeling of extensor digitorum longus muscle indicates that Tbc1d1 does not regulate basal GLUT4 cell surface exposure as previously suggested. Consistent with earlier observations, female and male Tbc1d1(-/-) mice demonstrate increased energy expenditure and skeletal muscle fatty acid oxidation. Interestingly, we observe sex-dependent differences in in vivo phenotypes. Female, but not male, Tbc1d1(-/-) mice have decreased body weight and impaired glucose and insulin tolerance, but only male Tbc1d1(-/-) mice show increased lipid clearance after oil gavage. We surmise that similar changes at the tissue level cause differences in whole-body metabolism between male and female Tbc1d1(-/-) mice and between male Tbc1d1(-/-) mice in different studies due to variations in body composition and nutrient handling.

  2. Deletion of the Rab GAP Tbc1d1 modifies glucose, lipid, and energy homeostasis in mice.

    PubMed

    Hargett, Stefan R; Walker, Natalie N; Hussain, Syed S; Hoehn, Kyle L; Keller, Susanna R

    2015-08-01

    Tbc1d1 is a Rab GTPase-activating protein (GAP) implicated in regulating intracellular retention and cell surface localization of the glucose transporter GLUT4 and thus glucose uptake in a phosphorylation-dependent manner. Tbc1d1 is most abundant in skeletal muscle but is expressed at varying levels among different skeletal muscles. Previous studies with male Tbc1d1-deficient (Tbc1d1(-/-)) mice on standard and high-fat diets established a role for Tbc1d1 in glucose, lipid, and energy homeostasis. Here we describe similar, but also additional abnormalities in male and female Tbc1d1(-/-) mice. We corroborate that Tbc1d1 loss leads to skeletal muscle-specific and skeletal muscle type-dependent abnormalities in GLUT4 expression and glucose uptake in female and male mice. Using subcellular fractionation, we show that Tbc1d1 controls basal intracellular GLUT4 retention in large skeletal muscles. However, cell surface labeling of extensor digitorum longus muscle indicates that Tbc1d1 does not regulate basal GLUT4 cell surface exposure as previously suggested. Consistent with earlier observations, female and male Tbc1d1(-/-) mice demonstrate increased energy expenditure and skeletal muscle fatty acid oxidation. Interestingly, we observe sex-dependent differences in in vivo phenotypes. Female, but not male, Tbc1d1(-/-) mice have decreased body weight and impaired glucose and insulin tolerance, but only male Tbc1d1(-/-) mice show increased lipid clearance after oil gavage. We surmise that similar changes at the tissue level cause differences in whole-body metabolism between male and female Tbc1d1(-/-) mice and between male Tbc1d1(-/-) mice in different studies due to variations in body composition and nutrient handling. PMID:26015432

  3. SLC6A3 coding variant Ala559Val found in two autism probands alters dopamine transporter function and trafficking.

    PubMed

    Bowton, E; Saunders, C; Reddy, I A; Campbell, N G; Hamilton, P J; Henry, L K; Coon, H; Sakrikar, D; Veenstra-VanderWeele, J M; Blakely, R D; Sutcliffe, J; Matthies, H J G; Erreger, K; Galli, A

    2014-10-14

    Emerging evidence associates dysfunction in the dopamine (DA) transporter (DAT) with the pathophysiology of autism spectrum disorder (ASD). The human DAT (hDAT; SLC6A3) rare variant with an Ala to Val substitution at amino acid 559 (hDAT A559V) was previously reported in individuals with bipolar disorder or attention-deficit hyperactivity disorder (ADHD). We have demonstrated that this variant is hyper-phosphorylated at the amino (N)-terminal serine (Ser) residues and promotes an anomalous DA efflux phenotype. Here, we report the novel identification of hDAT A559V in two unrelated ASD subjects and provide the first mechanistic description of its impaired trafficking phenotype. DAT surface expression is dynamically regulated by DAT substrates including the psychostimulant amphetamine (AMPH), which causes hDAT trafficking away from the plasma membrane. The integrity of DAT trafficking directly impacts DA transport capacity and therefore dopaminergic neurotransmission. Here, we show that hDAT A559V is resistant to AMPH-induced cell surface redistribution. This unique trafficking phenotype is conferred by altered protein kinase C β (PKCβ) activity. Cells expressing hDAT A559V exhibit constitutively elevated PKCβ activity, inhibition of which restores the AMPH-induced hDAT A559V membrane redistribution. Mechanistically, we link the inability of hDAT A559V to traffic in response to AMPH to the phosphorylation of the five most distal DAT N-terminal Ser. Mutation of these N-terminal Ser to Ala restores AMPH-induced trafficking. Furthermore, hDAT A559V has a diminished ability to transport AMPH, and therefore lacks AMPH-induced DA efflux. Pharmacological inhibition of PKCβ or Ser to Ala substitution in the hDAT A559V background restores AMPH-induced DA efflux while promoting intracellular AMPH accumulation. Although hDAT A559V is a rare variant, it has been found in multiple probands with neuropsychiatric disorders associated with imbalances in DA neurotransmission

  4. Simulation of Sediment and Cesium Transport in the Ukedo River and the Ogi Dam Reservoir during a Rainfall Event using the TODAM Code

    SciTech Connect

    Onishi, Yasuo; Yokuda, Satoru T.; Kurikami, Hiroshi

    2014-03-28

    The accident at the Fukushima Daiichi Nuclear Power Plant in March 2011 caused widespread environmental contamination. Although decontamination activities have been performed in residential areas of the Fukushima area, decontamination of forests, rivers, and reservoirs is still controversial because of the economical, ecological, and technical difficulties. Thus, an evaluation of contaminant transport in such an environment is important for safety assessment and for implementation of possible countermeasures to reduce radiation exposure to the public. The investigation revealed that heavy rainfall events play a significant role in transporting radioactive cesium deposited on the land surface, via soil erosion and sediment transport in rivers. Therefore, we simulated the sediment and cesium transport in the Ukedo River and its tributaries in Fukushima Prefecture, including the Ogaki Dam Reservoir, and the Ogi Dam Reservoir of the Oginosawa River in Fukushima Prefecture during and after a heavy rainfall event by using the TODAM (Time-dependent, One-dimensional Degradation And Migration) code. The main outcomes are the following: • Suspended sand is mostly deposited on the river bottom. Suspended silt and clay, on the other hand, are hardly deposited in the Ukedo River and its tributaries except in the Ogaki Dam Reservoir in the Ukedo River even in low river discharge conditions. • Cesium migrates mainly during high river discharge periods during heavy rainfall events. Silt and clay play more important roles in cesium transport to the sea than sand does. • The simulation results explain variations in the field data on cesium distributions in the river. Additional field data currently being collected and further modeling with these data may shed more light on the cesium distribution variations. • Effects of 40-hour heavy rainfall events on clay and cesium transport continue for more than a month. This is because these reservoirs slow down the storm-induced high

  5. User's manual for FENAT: a two-dimensional multigroup diffusion theory Finite Element Neutral Atom Transport code

    SciTech Connect

    Hasan, M.Z.

    1986-07-01

    FENAT solves the two-dimensional energy dependent diffusion equation in Cartesian (X-Y) and cylindrical/toroidal (R-Z) coordinates. The boundary conditions allowed are: vacuum, reflection, albedo and surface source. The energy variable is treated by multigroup method. The resulting multigroup diffusion equation is solved by finite element Galerkin's method with triangular element discretization of the spatial domain. The algebraic matrix equation is solved by the direct method of Crout variation of Gauss' elimination. Dynamic memory allocation has been used so that the maximum problem size is limited by the size of active core storage of the machine. When necessary, the global matrix is stored in a binary disk file. FENAT is particularly suitable for the transport of neutral atoms in fusion plasmas.

  6. TCTEX1D4 Interactome in Human Testis: Unraveling the Function of Dynein Light Chain in Spermatozoa

    PubMed Central

    Freitas, Maria João; Korrodi-Gregório, Luís; Morais-Santos, Filipa; da Cruz e Silva, Edgar

    2014-01-01

    Abstract Studies were designed to identify the TCTEX1D4 interactome in human testis, with the purpose of unraveling putative protein complexes essential to male reproduction and thus novel TCTEX1D4 functions. TCTEX1D4 is a dynein light chain that belongs to the DYNT1/TCTEX1 family. In spermatozoa, it appears to be important to sperm motility, intraflagellar transport, and acrosome reaction. To contribute to the knowledge on TCTEX1D4 function in testis and spermatozoa, a yeast two-hybrid assay was performed in testis, which allowed the identification of 40 novel TCTEX1D4 interactors. Curiously, another dynein light chain, TCTEX1D2, was identified and its existence demonstrated for the first time in human spermatozoa. Immunofluorescence studies proved that TCTEX1D2 is an intra-acrosomal protein also present in the midpiece, suggesting a role in cargo movement in human spermatozoa. Further, an in silico profile of TCTEX1D4 revealed that most TCTEX1D4 interacting proteins were not previously characterized and the ones described present a very broad nature. This reinforces TCTEX1D4 as a dynein light chain that is capable of interacting with a variety of functionally different proteins. These observations collectively contribute to a deeper molecular understanding of the human spermatozoa function. PMID:24606217

  7. TCTEX1D4 interactome in human testis: unraveling the function of dynein light chain in spermatozoa.

    PubMed

    Freitas, Maria João; Korrodi-Gregório, Luís; Morais-Santos, Filipa; Cruz e Silva, Edgar da; Fardilha, Margarida

    2014-04-01

    Studies were designed to identify the TCTEX1D4 interactome in human testis, with the purpose of unraveling putative protein complexes essential to male reproduction and thus novel TCTEX1D4 functions. TCTEX1D4 is a dynein light chain that belongs to the DYNT1/TCTEX1 family. In spermatozoa, it appears to be important to sperm motility, intraflagellar transport, and acrosome reaction. To contribute to the knowledge on TCTEX1D4 function in testis and spermatozoa, a yeast two-hybrid assay was performed in testis, which allowed the identification of 40 novel TCTEX1D4 interactors. Curiously, another dynein light chain, TCTEX1D2, was identified and its existence demonstrated for the first time in human spermatozoa. Immunofluorescence studies proved that TCTEX1D2 is an intra-acrosomal protein also present in the midpiece, suggesting a role in cargo movement in human spermatozoa. Further, an in silico profile of TCTEX1D4 revealed that most TCTEX1D4 interacting proteins were not previously characterized and the ones described present a very broad nature. This reinforces TCTEX1D4 as a dynein light chain that is capable of interacting with a variety of functionally different proteins. These observations collectively contribute to a deeper molecular understanding of the human spermatozoa function.

  8. Comparison of results between the DEMO 1-D and the COMMIX 3-D analysis of the CRBRP-IHX under a natural-circulation event

    SciTech Connect

    Cheung, A.C.; Kao, T.T.; Cho, S.M.; Lowrie, R.R.

    1983-01-01

    In order to assess the multi-dimensional thermal-hydraulic effects in an intermediate heat thermal-hydraulic effects in an intermediate heat exchanger (IHX) and to ascertain the adequacy of the DEMO one-dimensional (1-D) IHX model in natural circulation analysis, a comparison of the predictions by the DEMO and the COMMIX three-dimensional (3-D) computer code has been conducted. The CRBRP IHX configuration was used in this benchmark comparison. The COMMIX results clearly demonstrated that there is no significant flow channeling or stratification on either the shell or tube side of the CRBRP IHX during the postulated natural circulation event. Comparisons of the integrated thermal heads predicted by the two codes for the CRBRP IHX show differences of .013 and .024 psi (90 and 164 W/m/sup 2/ for both the primary and the secondary side respectively. These results demonstrate that, while a 1-D IHX model can not predict the velocity and temperature distribution inside the IHX in complete detail, it is adequate for the analysis of a heat transport system under design base natural circulation events (i.e. accidents initiated by the simultaneous loss of all AC power during power operation).

  9. Newtonian CAFE: a new ideal MHD code to study the solar atmosphere

    NASA Astrophysics Data System (ADS)

    González, J. J.; Guzmán, F.

    2015-12-01

    In this work we present a new independent code designed to solve the equations of classical ideal magnetohydrodynamics (MHD) in three dimensions, submitted to a constant gravitational field. The purpose of the code centers on the analysis of solar phenomena within the photosphere-corona region. In special the code is capable to simulate the propagation of impulsively generated linear and non-linear MHD waves in the non-isothermal solar atmosphere. We present 1D and 2D standard tests to demonstrate the quality of the numerical results obtained with our code. As 3D tests we present the propagation of MHD-gravity waves and vortices in the solar atmosphere. The code is based on high-resolution shock-capturing methods, uses the HLLE flux formula combined with Minmod, MC and WENO5 reconstructors. The divergence free magnetic field constraint is controlled using the Flux Constrained Transport method.

  10. EQAIRS - COMPUTER CODES FOR THE EVALUATION OF THERMODYNAMIC AND TRANSPORT PROPERTIES FOR EQUILIBRIUM AIR TO 30000 K

    NASA Technical Reports Server (NTRS)

    Thompson, R. A.

    1994-01-01

    EQAIRS is a set of FORTRAN 77 routines for computing the thermodynamic and transport properties of equilibrium air for temperatures from 100 to 30000 K. EQAIRS computes these properties over a pressure range of 1.0e-4 to 1.0e2 atm. The properties computed include enthalpy, total specific heat, compressibility factor, viscosity, and the total values of thermal conductivity and Prandtl number. The various properties are calculated through the use of temperature dependent curve-fits for the pressure range given above. The curve fits are based on mixture values calculated from an 11-species air model. Individual species properties used in the mixture relations were obtained from a recent study by the program authors. It is desirable to have these equilibrium air properties computed by curve-fits as opposed to tabulated values because curve-fits generally permit more efficient computation for flow-field analyses. In addition, for accurate calculations, it is preferable that the thermodynamic and transport properties be computed in a self-consistent manner from the same set of data as in the present case. The EQAIRS routines were written in the form of FORTRAN subroutines for easy adaptation to existing programs. The subroutines are commented and can be easily modified to suit the user's needs. In an attempt to maintain generality, a total of six separate subroutines are available for use: 1) ENTHLPY (specific enthalpy); 2) SPECIFC (total specific heat at constant pressure); 3) COMPRES (compressibility factor); 4) VISCSTY (viscosity); 5) CONDUCT (total thermal conductivity; and 6) PRANDTL (total Prandtl number). EQAIRS has been successfully implemented on a DEC VAX series computer running VMS, a Sun4 series computer running SunOS, and an IBM PC compatible computer running MS-DOS. Sample input/output and a sample driver program are provided. The standard distribution medium for EQAIRS is one 5.25 inch 360K MS-DOS format diskette. This program is also available on a .25

  11. Massively parallel multiple interacting continua formulation for modeling flow in fractured porous media using the subsurface reactive flow and transport code PFLOTRAN

    NASA Astrophysics Data System (ADS)

    Kumar, J.; Mills, R. T.; Lichtner, P. C.; Hammond, G. E.

    2010-12-01

    Fracture dominated flows occur in numerous subsurface geochemical processes and at many different scales in rock pore structures, micro-fractures, fracture networks and faults. Fractured porous media can be modeled as multiple interacting continua which are connected to each other through transfer terms that capture the flow of mass and energy in response to pressure, temperature and concentration gradients. However, the analysis of large-scale transient problems using the multiple interacting continuum approach presents an algorithmic and computational challenge for problems with very large numbers of degrees of freedom. A generalized dual porosity model based on the Dual Continuum Disconnected Matrix approach has been implemented within a massively parallel multiphysics-multicomponent-multiphase subsurface reactive flow and transport code PFLOTRAN. Developed as part of the Department of Energy's SciDAC-2 program, PFLOTRAN provides subsurface simulation capabilities that can scale from laptops to ultrascale supercomputers, and utilizes the PETSc framework to solve the large, sparse algebraic systems that arises in complex subsurface reactive flow and transport problems. It has been successfully applied to the solution of problems composed of more than two billions degrees of freedom, utilizing up to 131,072 processor cores on Jaguar, the Cray XT5 system at Oak Ridge National Laboratory that is the world’s fastest supercomputer. Building upon the capabilities and computational efficiency of PFLOTRAN, we will present an implementation of the multiple interacting continua formulation for fractured porous media along with an application case study.

  12. Mapping of two ugp genes coding for the pho regulon-dependent sn-glycerol-3-phosphate transport system of Escherichia coli.

    PubMed Central

    Schweizer, H; Grussenmeyer, T; Boos, W

    1982-01-01

    Two genes, ugpA and ugpB, coding for a binding protein-dependent sn-glycerol-3-phosphate transport system, were mapped at 75.3 min on the Escherichia coli chromosome. A Tn10 insertion in ugpA resulted in loss of transport activity but still allowed the synthesis of the sn-glycerol-3-phosphate-binding protein. This Tn10 insertion was found to be linked by P1 transduction to pit, aroB, malA, asd, and livH with 2.5, 2.8, 25, 63.5, and 83% cotransduction frequency. An insertion of Mud (Ampr lac) in ugpB resulted in the loss of the binding protein. ugpB is closely linked to ugpA. It is either the structural gene for the binding protein or located proximal to it. The analysis of the crosses allowed the ordering of the markers in the clockwise direction as follows: aroB, malA, asd, ugpA, ugpB, livH, pit. Images PMID:6281238

  13. Review, implementation and test of the QAZ1D computational method with a view to wave rotor applications

    NASA Astrophysics Data System (ADS)

    Salacka, T. F.

    1985-12-01

    The QAZ1D method is redeveloped in detail and implemented in a first order, one-dimensional FORTRAN program, EULER-1. The program is tested on the shock tube problem and results are presented for various computational meshes and initial conditions. Based on good results of the EULER-1 code, recommendations are made for future extensions and testing to validate the suitability of the QAZ1D method for wave rotor applications.

  14. Combining node-centered parallel radiation transport and higher-order multi-material cell-centered hydrodynamics methods in three-temperature radiation hydrodynamics code TRHD

    NASA Astrophysics Data System (ADS)

    Sijoy, C. D.; Chaturvedi, S.

    2016-06-01

    Higher-order cell-centered multi-material hydrodynamics (HD) and parallel node-centered radiation transport (RT) schemes are combined self-consistently in three-temperature (3T) radiation hydrodynamics (RHD) code TRHD (Sijoy and Chaturvedi, 2015) developed for the simulation of intense thermal radiation or high-power laser driven RHD. For RT, a node-centered gray model implemented in a popular RHD code MULTI2D (Ramis et al., 2009) is used. This scheme, in principle, can handle RT in both optically thick and thin materials. The RT module has been parallelized using message passing interface (MPI) for parallel computation. Presently, for multi-material HD, we have used a simple and robust closure model in which common strain rates to all materials in a mixed cell is assumed. The closure model has been further generalized to allow different temperatures for the electrons and ions. In addition to this, electron and radiation temperatures are assumed to be in non-equilibrium. Therefore, the thermal relaxation between the electrons and ions and the coupling between the radiation and matter energies are required to be computed self-consistently. This has been achieved by using a node-centered symmetric-semi-implicit (SSI) integration scheme. The electron thermal conduction is calculated using a cell-centered, monotonic, non-linear finite volume scheme (NLFV) suitable for unstructured meshes. In this paper, we have described the details of the 2D, 3T, non-equilibrium, multi-material RHD code developed with a special attention to the coupling of various cell-centered and node-centered formulations along with a suite of validation test problems to demonstrate the accuracy and performance of the algorithms. We also report the parallel performance of RT module. Finally, in order to demonstrate the full capability of the code implementation, we have presented the simulation of laser driven shock propagation in a layered thin foil. The simulation results are found to be in good

  15. Addressing numerical challenges in introducing a reactive transport code into a land surface model: a biogeochemical modeling proof-of-concept with CLM-PFLOTRAN 1.0

    NASA Astrophysics Data System (ADS)

    Tang, Guoping; Yuan, Fengming; Bisht, Gautam; Hammond, Glenn E.; Lichtner, Peter C.; Kumar, Jitendra; Mills, Richard T.; Xu, Xiaofeng; Andre, Ben; Hoffman, Forrest M.; Painter, Scott L.; Thornton, Peter E.

    2016-03-01

    We explore coupling to a configurable subsurface reactive transport code as a flexible and extensible approach to biogeochemistry in land surface models. A reaction network with the Community Land Model carbon-nitrogen (CLM-CN) decomposition, nitrification, denitrification, and plant uptake is used as an example. We implement the reactions in the open-source PFLOTRAN (massively parallel subsurface flow and reactive transport) code and couple it with the CLM. To make the rate formulae designed for use in explicit time stepping in CLMs compatible with the implicit time stepping used in PFLOTRAN, the Monod substrate rate-limiting function with a residual concentration is used to represent the limitation of nitrogen availability on plant uptake and immobilization. We demonstrate that CLM-PFLOTRAN predictions (without invoking PFLOTRAN transport) are consistent with CLM4.5 for Arctic, temperate, and tropical sites.Switching from explicit to implicit method increases rigor but introduces numerical challenges. Care needs to be taken to use scaling, clipping, or log transformation to avoid negative concentrations during the Newton iterations. With a tight relative update tolerance (STOL) to avoid false convergence, an accurate solution can be achieved with about 50 % more computing time than CLM in point mode site simulations using either the scaling or clipping methods. The log transformation method takes 60-100 % more computing time than CLM. The computing time increases slightly for clipping and scaling; it increases substantially for log transformation for half saturation decrease from 10-3 to 10-9 mol m-3, which normally results in decreasing nitrogen concentrations. The frequent occurrence of very low concentrations (e.g. below nanomolar) can increase the computing time for clipping or scaling by about 20 %, double for log transformation. Overall, the log transformation method is accurate and robust, and the clipping and scaling methods are efficient. When the

  16. Addressing numerical challenges in introducing a reactive transport code into a land surface model: a biogeochemical modeling proof-of-concept with CLM–PFLOTRAN 1.0

    DOE PAGES

    Tang, Guoping; Yuan, Fengming; Bisht, Gautam; Hammond, Glenn E.; Lichtner, Peter C.; Kumar, Jitendra; Mills, Richard T.; Xu, Xiaofeng; Andre, Ben; Hoffman, Forrest M.; et al

    2016-03-04

    We explore coupling to a configurable subsurface reactive transport code as a flexible and extensible approach to biogeochemistry in land surface models. A reaction network with the Community Land Model carbon–nitrogen (CLM-CN) decomposition, nitrification, denitrification, and plant uptake is used as an example. We implement the reactions in the open-source PFLOTRAN (massively parallel subsurface flow and reactive transport) code and couple it with the CLM. To make the rate formulae designed for use in explicit time stepping in CLMs compatible with the implicit time stepping used in PFLOTRAN, the Monod substrate rate-limiting function with a residual concentration is used to represent the limitation ofmore » nitrogen availability on plant uptake and immobilization. We demonstrate that CLM–PFLOTRAN predictions (without invoking PFLOTRAN transport) are consistent with CLM4.5 for Arctic, temperate, and tropical sites.Switching from explicit to implicit method increases rigor but introduces numerical challenges. Care needs to be taken to use scaling, clipping, or log transformation to avoid negative concentrations during the Newton iterations. With a tight relative update tolerance (STOL) to avoid false convergence, an accurate solution can be achieved with about 50 % more computing time than CLM in point mode site simulations using either the scaling or clipping methods. The log transformation method takes 60–100 % more computing time than CLM. The computing time increases slightly for clipping and scaling; it increases substantially for log transformation for half saturation decrease from 10−3 to 10−9 mol m−3, which normally results in decreasing nitrogen concentrations. The frequent occurrence of very low concentrations (e.g. below nanomolar) can increase the computing time for clipping or scaling by about 20 %, double for log transformation. Overall, the log transformation method is accurate and robust, and the clipping and scaling

  17. An information theoretic approach to use high-fidelity codes to calibrate low-fidelity codes

    NASA Astrophysics Data System (ADS)

    Lewis, Allison; Smith, Ralph; Williams, Brian; Figueroa, Victor

    2016-11-01

    For many simulation models, it can be prohibitively expensive or physically infeasible to obtain a complete set of experimental data to calibrate model parameters. In such cases, one can alternatively employ validated higher-fidelity codes to generate simulated data, which can be used to calibrate the lower-fidelity code. In this paper, we employ an information-theoretic framework to determine the reduction in parameter uncertainty that is obtained by evaluating the high-fidelity code at a specific set of design conditions. These conditions are chosen sequentially, based on the amount of information that they contribute to the low-fidelity model parameters. The goal is to employ Bayesian experimental design techniques to minimize the number of high-fidelity code evaluations required to accurately calibrate the low-fidelity model. We illustrate the performance of this framework using heat and diffusion examples, a 1-D kinetic neutron diffusion equation, and a particle transport model, and include initial results from the integration of the high-fidelity thermal-hydraulics code Hydra-TH with a low-fidelity exponential model for the friction correlation factor.

  18. Computational methods in tokamak transport

    SciTech Connect

    Houlberg, W.A.; Attenberger, S.E.; Lao, L.L.

    1982-06-01

    A variety of numerical methods for solving the time-dependent fluid transport equations for tokamak plasmas is presented. Among the problems discussed are techniques for solving the sometimes very stiff parabolic equations for particle and energy flow, treating convection-dominated energy transport that leads to large cell Reynolds numbers, optimizing the flow of a code to reduce the time spent updating the particle and energy source terms, coupling the one-dimensional (1-D) flux-surface-averaged fluid transport equations to solutions of the 2-D Grad-Shafranov equation for the plasma geometry, handling extremely fast transient problems such as internal MHD disruptions and pellet injection, and processing the output to summarize the physics parameters over the potential operating regime for reactors. Emphasis is placed on computational efficiency in both computer time and storage requirements.

  19. Markov Chain Monte Carlo Sampling Methods for 1D Seismic and EM Data Inversion

    2008-09-22

    This software provides several Markov chain Monte Carlo sampling methods for the Bayesian model developed for inverting 1D marine seismic and controlled source electromagnetic (CSEM) data. The current software can be used for individual inversion of seismic AVO and CSEM data and for joint inversion of both seismic and EM data sets. The structure of the software is very general and flexible, and it allows users to incorporate their own forward simulation codes and rockmore » physics model codes easily into this software. Although the softwae was developed using C and C++ computer languages, the user-supplied codes can be written in C, C++, or various versions of Fortran languages. The software provides clear interfaces for users to plug in their own codes. The output of this software is in the format that the R free software CODA can directly read to build MCMC objects.« less

  20. Novel electronic structures of self-organized 1D surface nanostructures

    NASA Astrophysics Data System (ADS)

    Yeom, Han Woong

    2002-03-01

    Recently we have searched for the exotic physical properties of the nanostructures formed on semiconductor surfaces by STM and photoelectron spectroscopy [1]. The major objects have been the 1D chains of metal adsorbates on Si or SiC surfaces. It now seems obvious that such (sub)nanometer-scale atomic chains possess significant technological implications for the future device technology. Furthermore those systems provide very attractive and unprecedented opportunity to study exotic physical properties of 1D electronic systems in detail, such as Peierls instability, charge density wave (CDW), electron correlation, non-Fermi liquid behavior, and interplay of defects with 1D excitations (1D solitons, 1D domain walls and etc). The present talk focuses on the recent experimental and theoretical studies for the novel electronic properties of the 1D atomic chain systems on the Si(111) surface such as Si(111)4x1-In [2], Si(111)5x2-Au [3], Si(557)5x2-Au [4], and Si(111)3x2-Ba(or Ca) [5]. These systems have well defined one dimensional electronic bands, which exhibit intriguing properties challenging our present understanding. The major points of debates right now are the origin of the periodicity-doubling phase transition of Si(111)4x1-In in relation to 1D CDW [2], the nature of the band gap (or pseudo gap) of Si(111)5x2-Au (also related to 1D CDW idea) [3], the Si(111)3x2-Ba (or Ca) surface (1D Mott-Hubbard system ?) [5], and the nature of the band dispersion of the Si(557)5x2-Au surface (any Luttinger liquid behavior ?) [4]. Some new aspects of these systems are introduced such as the doping dependence of the 1D CDW system and the transport measurements across the 1D CDW transition. References [1] For a recent review, see H. W. Yeom, J. Electron Spectro. and Rel. Phenom., 114-116, 283 (2001). [2] H.W. Yeom et al., Phys. Rev. Lett. 82, 4898 (1999); C. Kumpf et al, Phys. Rev. Lett. 85, 4916 (2001); H.W. Yeom et al., submitted; G. Le Lay et al., submitted; J.-H. Cho et al

  1. 1-D Numerical Analysis of RBCC Engine Performance

    NASA Technical Reports Server (NTRS)

    Han, Samuel S.

    1998-01-01

    An RBCC engine combines air breathing and rocket engines into a single engine to increase the specific impulse over an entire flight trajectory. Considerable research pertaining to RBCC propulsion was performed during the 1960's and these engines were revisited recently as a candidate propulsion system for either a single-stage-to-orbit (SSTO) or two-stage-to-orbit (TSTO) launch vehicle. There are a variety of RBCC configurations that had been evaluated and new designs are currently under development. However, the basic configuration of all RBCC systems is built around the ejector scramjet engine originally developed for the hypersonic airplane. In this configuration, a rocket engine plays as an ejector in the air-augmented initial acceleration mode, as a fuel injector in scramjet mode and the rocket in all rocket mode for orbital insertion. Computational fluid dynamics (CFD) is a useful tool for the analysis of complex transport processes in various components in RBCC propulsion systems. The objective of the present research was to develop a transient 1-D numerical model that could be used to predict flow behavior throughout a generic RBCC engine following a flight path.

  2. The structure of the gene ATRC1 coding for a cationic amino acid transport system in man: Molecular studies in lysinuric protein intolerance

    SciTech Connect

    Incerti, B.; Sebastio, G.; Parenti, G.

    1994-09-01

    The human cDNA (ATRC1) homologue of a murine gene encoding for a transporter specific for cationic amino acid (CAA) has been isolated. ATRC1 stimulates the uptake of CAA and shows the kinetic properties of system y+ when expressed in frog oocytes. To characterize the organization of the ATRC1 gene, a {lambda} phages genomic DNA library has been screened using an ATRC1 full length cDNA clone as a probe. Nine positive phages have been subcloned in plasmids and sequenced using cDNA specific primers to identify intron-exon junctions. The ATRC1 gene consists of 13 exons with an alternative first exon. Analysis of the intron/exon boundaries showed canonical sequences at the splice junction sites. ATRC1 expression pattern has been analyzed by RT-PCR. ATRC1 is expressed in adult fibroblasts and enterocytes, in fetal kidney, brain and heart, and in lymphoblastoid cell lines. The knowledge of structure and organization of ATRC1 can help in studying inborn errors of CAA transport. The best characterized among these diseases is Lysinuric Protein Intolerance (LPI) a multisystem disorder with impaired formation of urea and hyperammonemia after protein ingestion. Linkage analysis performed on 10 LPI patients from 9 Italian families using two intragenic RFLPs revealed 3 informative families and no recombinations. Using the CA-repeat microsatellite D12S120 (2 cM far from ATRC-1 locus) we found 7 informative families and 3 recombinational events. The sequence of the entire coding region of an LPI patient failed to show mutations. The data so far obtained do not seem to support the hypothesis that ATRC1 is the LPI gene.

  3. Comparison of Analysis Results Between 2D/1D Synthesis and RAPTOR-M3G in the Korea Standard Nuclear Plant (KSNP)

    NASA Astrophysics Data System (ADS)

    Joung Lim, Mi; Maeng, Young Jae; Fero, Arnold H.; Anderson, Stanwood L.

    2016-02-01

    The 2D/1D synthesis methodology has been used to calculate the fast neutron (E > 1.0 MeV) exposure to the beltline region of the reactor pressure vessel. This method uses the DORT 3.1 discrete ordinates code and the BUGLE-96 cross-section library based on ENDF/B-VI. RAPTOR-M3G (RApid Parallel Transport Of Radiation-Multiple 3D Geometries) which performs full 3D calculations was developed and is based on domain decomposition algorithms, where the spatial and angular domains are allocated and processed on multi-processor computer architecture. As compared to traditional single-processor applications, this approach reduces the computational load as well as the memory requirement per processor. Both methods are applied to surveillance test results for the Korea Standard Nuclear Plant (KSNP)-OPR (Optimized Power Reactor) 1000 MW. The objective of this paper is to compare the results of the KSNP surveillance program between 2D/1D synthesis and RAPTOR-M3G. Each operating KSNP has a reactor vessel surveillance program consisting of six surveillance capsules located between the core and the reactor vessel in the downcomer region near the reactor vessel wall. In addition to the In-Vessel surveillance program, an Ex-Vessel Neutron Dosimetry (EVND) program has been implemented. In order to estimate surveillance test results, cycle-specific forward transport calculations were performed by 2D/1D synthesis and by RAPTOR-M3G. The ratio between measured and calculated (M/C) reaction rates will be discussed. The current plan is to install an EVND system in all of the Korea PWRs including the new reactor type, APR (Advanced Power Reactor) 1400 MW. This work will play an important role in establishing a KSNP-specific database of surveillance test results and will employ RAPTOR-M3G for surveillance dosimetry location as well as positions in the KSNP reactor vessel.

  4. Monte Carlo N–Particle Transport Code System Including MCNP6.1.1BETA, MCNP6.1, MCNP5-1.60, MCNPX-2.7.0 and Data Libraries.

    2014-09-01

    Version 01 MCNP6™ is a general-purpose, continuous-energy, generalized-geometry, time-dependent, Monte Carlo radiation-transport code designed to track many particle types over broad ranges of energies. This MCNP6.1.1Beta is a follow-on to the MCNP6.1 production version which itself was the culmination of a multi-year effort to merge the MCNP5™ [X-503] and MCNPX™ [PEL11] codes into a single product. This MCNP6.1.1 beta has been released in order to provide the radiation transport community with the latest feature developmentsmore » and bug fixes in the code. MCNP6.1.1 has taken input from a group of people, residing in the Los Alamos National Laboratory's (LANL) X Computational Physics Division, Radiation Transport Group (XCP-3), and Nuclear Engineering and Nonproliferation Division, Systems Design and Analysis Group (NEN-5). They have combined their code development efforts to produce this next evolution of MCNP. For those familiar with previous versions of MCNP, you will discover the code has been expanded to handle a multitude of particles and to include model physics options for energies above the cross-section table range, a material burnup feature, and delayed particle production. Expanded and/or new tally, source, and variance-reduction options are available to the user as well as an improved plotting capability. The capability to calculate keff eigenvalues for fissile systems remains a standard feature. Although MCNP6 is simply and accurately described as the merger of MCNP5 and MCNPX capabilities, the result is much more than the sum of these two computer codes. MCNP6 is the result of five years of effort by the MCNP5 and MCNPX code development teams.« less

  5. Monte Carlo N–Particle Transport Code System Including MCNP6.1.1BETA, MCNP6.1, MCNP5-1.60, MCNPX-2.7.0 and Data Libraries.

    SciTech Connect

    2014-09-01

    Version 01 MCNP6™ is a general-purpose, continuous-energy, generalized-geometry, time-dependent, Monte Carlo radiation-transport code designed to track many particle types over broad ranges of energies. This MCNP6.1.1Beta is a follow-on to the MCNP6.1 production version which itself was the culmination of a multi-year effort to merge the MCNP5™ [X-503] and MCNPX™ [PEL11] codes into a single product. This MCNP6.1.1 beta has been released in order to provide the radiation transport community with the latest feature developments and bug fixes in the code. MCNP6.1.1 has taken input from a group of people, residing in the Los Alamos National Laboratory's (LANL) X Computational Physics Division, Radiation Transport Group (XCP-3), and Nuclear Engineering and Nonproliferation Division, Systems Design and Analysis Group (NEN-5). They have combined their code development efforts to produce this next evolution of MCNP. For those familiar with previous versions of MCNP, you will discover the code has been expanded to handle a multitude of particles and to include model physics options for energies above the cross-section table range, a material burnup feature, and delayed particle production. Expanded and/or new tally, source, and variance-reduction options are available to the user as well as an improved plotting capability. The capability to calculate keff eigenvalues for fissile systems remains a standard feature. Although MCNP6 is simply and accurately described as the merger of MCNP5 and MCNPX capabilities, the result is much more than the sum of these two computer codes. MCNP6 is the result of five years of effort by the MCNP5 and MCNPX code development teams.

  6. MORSE Monte Carlo code

    SciTech Connect

    Cramer, S.N.

    1984-01-01

    The MORSE code is a large general-use multigroup Monte Carlo code system. Although no claims can be made regarding its superiority in either theoretical details or Monte Carlo techniques, MORSE has been, since its inception at ORNL in the late 1960s, the most widely used Monte Carlo radiation transport code. The principal reason for this popularity is that MORSE is relatively easy to use, independent of any installation or distribution center, and it can be easily customized to fit almost any specific need. Features of the MORSE code are described.

  7. Final Technical Report for SBIR entitled Four-Dimensional Finite-Orbit-Width Fokker-Planck Code with Sources, for Neoclassical/Anomalous Transport Simulation of Ion and Electron Distributions

    SciTech Connect

    Harvey, R. W.; Petrov, Yu. V.

    2013-12-03

    Within the US Department of Energy/Office of Fusion Energy magnetic fusion research program, there is an important whole-plasma-modeling need for a radio-frequency/neutral-beam-injection (RF/NBI) transport-oriented finite-difference Fokker-Planck (FP) code with combined capabilities for 4D (2R2V) geometry near the fusion plasma periphery, and computationally less demanding 3D (1R2V) bounce-averaged capabilities for plasma in the core of fusion devices. Demonstration of proof-of-principle achievement of this goal has been carried out in research carried out under Phase I of the SBIR award. Two DOE-sponsored codes, the CQL3D bounce-average Fokker-Planck code in which CompX has specialized, and the COGENT 4D, plasma edge-oriented Fokker-Planck code which has been constructed by Lawrence Livermore National Laboratory and Lawrence Berkeley Laboratory scientists, where coupled. Coupling was achieved by using CQL3D calculated velocity distributions including an energetic tail resulting from NBI, as boundary conditions for the COGENT code over the two-dimensional velocity space on a spatial interface (flux) surface at a given radius near the plasma periphery. The finite-orbit-width fast ions from the CQL3D distributions penetrated into the peripheral plasma modeled by the COGENT code. This combined code demonstrates the feasibility of the proposed 3D/4D code. By combining these codes, the greatest computational efficiency is achieved subject to present modeling needs in toroidally symmetric magnetic fusion devices. The more efficient 3D code can be used in its regions of applicability, coupled to the more computationally demanding 4D code in higher collisionality edge plasma regions where that extended capability is necessary for accurate representation of the plasma. More efficient code leads to greater use and utility of the model. An ancillary aim of the project is to make the combined 3D/4D code user friendly. Achievement of full-coupling of these two Fokker

  8. Spacecraft Solar Particle Event (SPE) Shielding: Shielding Effectiveness as a Function of SPE model as Determined with the FLUKA Radiation Transport Code

    NASA Technical Reports Server (NTRS)

    Koontz, Steve; Atwell, William; Reddell, Brandon; Rojdev, Kristina

    2010-01-01

    Analysis of both satellite and surface neutron monitor data demonstrate that the widely utilized Exponential model of solar particle event (SPE) proton kinetic energy spectra can seriously underestimate SPE proton flux, especially at the highest kinetic energies. The more recently developed Band model produces better agreement with neutron monitor data ground level events (GLEs) and is believed to be considerably more accurate at high kinetic energies. Here, we report the results of modeling and simulation studies in which the radiation transport code FLUKA (FLUktuierende KAskade) is used to determine the changes in total ionizing dose (TID) and single-event environments (SEE) behind aluminum, polyethylene, carbon, and titanium shielding masses when the assumed form (i. e., Band or Exponential) of the solar particle event (SPE) kinetic energy spectra is changed. FLUKA simulations have fully three dimensions with an isotropic particle flux incident on a concentric spherical shell shielding mass and detector structure. The effects are reported for both energetic primary protons penetrating the shield mass and secondary particle showers caused by energetic primary protons colliding with shielding mass nuclei. Our results, in agreement with previous studies, show that use of the Exponential form of the event

  9. Improved atomic data for electron-transport predictions by the codes TIGER and TIGERP. I. Inner-shell ionization by electron collision

    SciTech Connect

    Peek, J.M.; Halbleib, J.A.

    1983-01-01

    The inner-shell ionization data for electron-target collisions now in use in the TIGER and TIGERP electron-transport codes are extracted and compared with other data for these processes. The TIGER cross sections for K-shell ionization by electron collisions are found to be seriously in error for large-Z targets and incident electron energies greater than 1 MeV. A series of TIGER and TIGERP runs were carried out with and without improved K-shell electron ionization cross section data replacing that now in use. The relative importance of electron-impact and photon ionization of the various subshells was also extracted from these runs. In general, photon ionization dominated in the examples studied so the sensitivity of many predicted properties to errors in the electron-impact subshell ionization data was not large. However, some differences were found and, as all possible applications were not covered in this study, it is recommended that these electron-impact data now in TIGER and TIGERP be replaced. Cross section data for the processes under study are reviewed and those that are most suitable for this application are identified. 19 references, 9 figures, 2 tables.

  10. Three-dimensional simulation of H-mode plasmas with localized divertor impurity injection on Alcator C-Mod using the edge transport code EMC3-EIRENE

    SciTech Connect

    Lore, Jeremy D.; Reinke, M. L.; Brunner, D.; LaBombard, B. A.; Lipschultz, B.; Terry, J. L.; Pitts, R. A.; Feng, Y.

    2015-04-28

    We study experiments in Alcator C-Mod to assess the level of toroidal asymmetry in divertor conditions resulting from poloidally and toroidally localized extrinsic impurity gas seeding show a weak toroidal peaking (~1.1) in divertor electron temperatures for high-power enhanced D-alpha H-modeplasmas. This is in contrast to similar experiments in Ohmically heated L-modeplasmas, which showed a clear toroidal modulation in the divertor electron temperature. Modeling of these experiments using the 3D edge transport code EMC3-EIRENE [Y. Feng et al., J. Nucl. Mater. 241, 930 (1997)] qualitatively reproduces these trends, and indicates that the different response in the simulations is due to the ionization location of the injected nitrogen. Low electron temperatures in the private flux region (PFR) in L-mode result in a PFR plasma that is nearly transparent to neutral nitrogen, while in H-mode the impurities are ionized in close proximity to the injection location, with this latter case yielding a largely axisymmetric radiation pattern in the scrape-off-layer. In conclusion, the consequences for the ITER gas injection system are discussed. Quantitative agreement with the experiment is lacking in some areas, suggesting potential areas for improving the physics model in EMC3-EIRENE.

  11. Three-dimensional simulation of H-mode plasmas with localized divertor impurity injection on Alcator C-Mod using the edge transport code EMC3-EIRENE

    DOE PAGES

    Lore, Jeremy D.; Reinke, M. L.; Brunner, D.; LaBombard, B. A.; Lipschultz, B.; Terry, J. L.; Pitts, R. A.; Feng, Y.

    2015-04-28

    We study experiments in Alcator C-Mod to assess the level of toroidal asymmetry in divertor conditions resulting from poloidally and toroidally localized extrinsic impurity gas seeding show a weak toroidal peaking (~1.1) in divertor electron temperatures for high-power enhanced D-alpha H-modeplasmas. This is in contrast to similar experiments in Ohmically heated L-modeplasmas, which showed a clear toroidal modulation in the divertor electron temperature. Modeling of these experiments using the 3D edge transport code EMC3-EIRENE [Y. Feng et al., J. Nucl. Mater. 241, 930 (1997)] qualitatively reproduces these trends, and indicates that the different response in the simulations is due tomore » the ionization location of the injected nitrogen. Low electron temperatures in the private flux region (PFR) in L-mode result in a PFR plasma that is nearly transparent to neutral nitrogen, while in H-mode the impurities are ionized in close proximity to the injection location, with this latter case yielding a largely axisymmetric radiation pattern in the scrape-off-layer. In conclusion, the consequences for the ITER gas injection system are discussed. Quantitative agreement with the experiment is lacking in some areas, suggesting potential areas for improving the physics model in EMC3-EIRENE.« less

  12. Brady 1D seismic velocity model ambient noise prelim

    DOE Data Explorer

    Mellors, Robert J.

    2013-10-25

    Preliminary 1D seismic velocity model derived from ambient noise correlation. 28 Green's functions filtered between 4-10 Hz for Vp, Vs, and Qs were calculated. 1D model estimated for each path. The final model is a median of the individual models. Resolution is best for the top 1 km. Poorly constrained with increasing depth.

  13. Effects of GWAS-Associated Genetic Variants on lncRNAs within IBD and T1D Candidate Loci

    PubMed Central

    Brorsson, Caroline A.; Pociot, Flemming

    2014-01-01

    Long non-coding RNAs are a new class of non-coding RNAs that are at the crosshairs in many human diseases such as cancers, cardiovascular disorders, inflammatory and autoimmune disease like Inflammatory Bowel Disease (IBD) and Type 1 Diabetes (T1D). Nearly 90% of the phenotype-associated single-nucleotide polymorphisms (SNPs) identified by genome-wide association studies (GWAS) lie outside of the protein coding regions, and map to the non-coding intervals. However, the relationship between phenotype-associated loci and the non-coding regions including the long non-coding RNAs (lncRNAs) is poorly understood. Here, we systemically identified all annotated IBD and T1D loci-associated lncRNAs, and mapped nominally significant GWAS/ImmunoChip SNPs for IBD and T1D within these lncRNAs. Additionally, we identified tissue-specific cis-eQTLs, and strong linkage disequilibrium (LD) signals associated with these SNPs. We explored sequence and structure based attributes of these lncRNAs, and also predicted the structural effects of mapped SNPs within them. We also identified lncRNAs in IBD and T1D that are under recent positive selection. Our analysis identified putative lncRNA secondary structure-disruptive SNPs within and in close proximity (+/−5 kb flanking regions) of IBD and T1D loci-associated candidate genes, suggesting that these RNA conformation-altering polymorphisms might be associated with diseased-phenotype. Disruption of lncRNA secondary structure due to presence of GWAS SNPs provides valuable information that could be potentially useful for future structure-function studies on lncRNAs. PMID:25144376

  14. New analytic 1D pn junction diode transient photocurrent solutions following ionizing radiation and including time-dependent carrier lifetime degradation from a non-concurrent neutron pulse.

    SciTech Connect

    Axness, Carl L.; Keiter, Eric Richard; Kerr, Bert

    2010-07-01

    Circuit simulation codes, such as SPICE, are invaluable in the development and design of electronic circuits in radiation environments. These codes are often employed to study the effect of many thousands of devices under transient current conditions. Device-scale simulation codes are commonly used in the design of individual semiconductor components, but computational requirements limit their use to small-scale circuits. Analytic solutions to the ambipolar diffusion equation, an approximation to the carrier transport equations, may be used to characterize the transient currents at nodes within a circuit simulator. We present new analytic transient excess carrier density and photocurrent solutions to the ambipolar diffusion equation for 1-D abrupt-junction pn diodes. These solutions incorporate low-level radiation pulses and take into account a finite device geometry, ohmic fields outside the depleted region, and an arbitrary change in the carrier lifetime due to neutron irradiation or other effects. The solutions are specifically evaluated for the case of an abrupt change in the carrier lifetime during or after, a step, square, or piecewise linear radiation pulse. Noting slow convergence of the Fourier series solutions for some parameters sets, we evaluate portions of the solutions using closed-form formulas, which result in a two order of magnitude increase in computational efficiency.

  15. Newtonian CAFE: a new ideal MHD code to study the solar atmosphere

    NASA Astrophysics Data System (ADS)

    González-Avilés, J. J.; Cruz-Osorio, A.; Lora-Clavijo, F. D.; Guzmán, F. S.

    2015-12-01

    We present a new code designed to solve the equations of classical ideal magnetohydrodynamics (MHD) in three dimensions, submitted to a constant gravitational field. The purpose of the code centres on the analysis of solar phenomena within the photosphere-corona region. We present 1D and 2D standard tests to demonstrate the quality of the numerical results obtained with our code. As solar tests we present the transverse oscillations of Alfvénic pulses in coronal loops using a 2.5D model, and as 3D tests we present the propagation of impulsively generated MHD-gravity waves and vortices in the solar atmosphere. The code is based on high-resolution shock-capturing methods, uses the Harten-Lax-van Leer-Einfeldt (HLLE) flux formula combined with Minmod, MC, and WENO5 reconstructors. The divergence free magnetic field constraint is controlled using the Flux Constrained Transport method.

  16. A 1D exact treatment of shock waves within spectral methods in plane geometry

    NASA Astrophysics Data System (ADS)

    Bonazzola, Silvano; Marck, Jean-Alain

    1991-12-01

    A high-accuracy numerical technique is presented which employs two moving grids, respectively before and after the shock formation, to solve 1D Euler equations that are coupled with the transport equations for the entropy and the chemical abundances in cases with and without shock formation. Chebychev polynomial series are used to expand quantities on both sides of the matching point, and Rankine-Hugoniot conditions are used to ascertain the shock velocity after shock formation. Illustrative results are presented.

  17. Using reactive transport codes to provide mechanistic biogeochemistry representations in land surface models: A proof of concept with CLM-PFLOTRAN

    NASA Astrophysics Data System (ADS)

    Tang, Guoping; Yuan, Fengming; Bisht, Gautam; Hammond, Glenn; Lichtner, Peter; Kumar, Jitendra; Mills, Richard; Xu, Xiaofeng; Andre, Ben; Painter, Scott; Thornton, Peter

    2016-04-01

    We explore coupling to a configurable subsurface reactive transport code as a flexible and extensible approach to biogeochemistry in land surface models. A reaction network with the CLM-CN decomposition, nitrification, denitrification, and plant uptake similar to CLM4.5 is used as an example. We implement the reactions in the open-source PFLOTRAN code, coupled with the Community Land Model (CLM), and test at Arctic, temperate, and tropical sites. To make the reaction network designed for use in explicit time stepping in CLM compatible with the implicit time stepping used in PFLOTRAN, the Monod substrate rate-limiting function with a residual concentration is used to represent the limitation of nitrogen availability on plant uptake and immobilization. Switching from explicit to implicit methods increases numerical rigor but introduces computational challenges. Our objective is to achieve accurate, efficient, and robust numerical solutions to demonstrate the feasibility of CLM-PFLOTRAN soil biogeochemistry. Our results suggest that care needs to be taken to use scaling, clipping, or log transformation to avoid negative concentrations during the Newton iterations. With a tight relative update tolerance to avoid false convergence, an accurate solution can be achieved with about 50 {%} more computing time than CLM in point mode site simulations using either the scaling or clipping methods. The log transformation method takes 60-100 {%} more computing time than CLM. The computing time increases slightly for clipping and scaling; it increases substantially for log transformation for half saturation decrease from 10-3 to 10-9 \\unit{mol m-3}, which normally results in decreasing nitrogen concentrations. The frequent occurrence of very low concentrations (e.g. below nanomolar) can increase the computing time for clipping or scaling by about 20 {%}; computing time can be doubled for log transformation. Caution needs to be taken in choosing the appropriate scaling factor

  18. Endoplasmic Reticulum Glycoprotein Quality Control Regulates CD1d Assembly and CD1d-mediated Antigen Presentation*

    PubMed Central

    Kunte, Amit; Zhang, Wei; Paduraru, Crina; Veerapen, Natacha; Cox, Liam R.; Besra, Gurdyal S.; Cresswell, Peter

    2013-01-01

    The non-classical major histocompatibility complex (MHC) homologue CD1d presents lipid antigens to innate-like lymphocytes called natural-killer T (NKT) cells. These cells, by virtue of their broad cytokine repertoire, shape innate and adaptive immune responses. Here, we have assessed the role of endoplasmic reticulum glycoprotein quality control in CD1d assembly and function, specifically the role of a key component of the quality control machinery, the enzyme UDP glucose glycoprotein glucosyltransferase (UGT1). We observe that in UGT1-deficient cells, CD1d associates prematurely with β2-microglobulin (β2m) and is able to rapidly exit the endoplasmic reticulum. At least some of these CD1d-β2m heterodimers are shorter-lived and can be rescued by provision of a defined exogenous antigen, α-galactosylceramide. Importantly, we show that in UGT1-deficient cells the CD1d-β2m heterodimers have altered antigenicity despite the fact that their cell surface levels are unchanged. We propose that UGT1 serves as a quality control checkpoint during CD1d assembly and further suggest that UGT1-mediated quality control can shape the lipid repertoire of newly synthesized CD1d. The quality control process may play a role in ensuring stability of exported CD1d-β2m complexes, in facilitating presentation of low abundance high affinity antigens, or in preventing deleterious responses to self lipids. PMID:23615906

  19. A South American Prehistoric Mitogenome: Context, Continuity, and the Origin of Haplogroup C1d

    PubMed Central

    Sans, Mónica; Figueiro, Gonzalo; Hughes, Cris E.; Lindo, John; Hidalgo, Pedro C.; Malhi, Ripan S.

    2015-01-01

    Based on mitochondrial DNA (mtDNA), it has been estimated that at least 15 founder haplogroups peopled the Americas. Subhaplogroup C1d3 was defined based on the mitogenome of a living individual from Uruguay that carried a lineage previously identified in hypervariable region I sequences from ancient and modern Uruguayan individuals. When complete mitogenomes were studied, additional substitutions were found in the coding region of the mitochondrial genome. Using a complete ancient mitogenome and three modern mitogenomes, we aim to clarify the ancestral state of subhaplogroup C1d3 and to better understand the peopling of the region of the Río de la Plata basin, as well as of the builders of the mounds from which the ancient individuals were recovered. The ancient mitogenome, belonging to a female dated to 1,610±46 years before present, was identical to the mitogenome of one of the modern individuals. All individuals share the mutations defining subhaplogroup C1d3. We estimated an age of 8,974 (5,748–12,261) years for the most recent common ancestor of C1d3, in agreement with the initial peopling of the geographic region. No individuals belonging to the defined lineage were found outside of Uruguay, which raises questions regarding the mobility of the prehistoric inhabitants of the country. Moreover, the present study shows the continuity of Native lineages over at least 6,000 years. PMID:26509686

  20. A South American Prehistoric Mitogenome: Context, Continuity, and the Origin of Haplogroup C1d.

    PubMed

    Sans, Mónica; Figueiro, Gonzalo; Hughes, Cris E; Lindo, John; Hidalgo, Pedro C; Malhi, Ripan S

    2015-01-01

    Based on mitochondrial DNA (mtDNA), it has been estimated that at least 15 founder haplogroups peopled the Americas. Subhaplogroup C1d3 was defined based on the mitogenome of a living individual from Uruguay that carried a lineage previously identified in hypervariable region I sequences from ancient and modern Uruguayan individuals. When complete mitogenomes were studied, additional substitutions were found in the coding region of the mitochondrial genome. Using a complete ancient mitogenome and three modern mitogenomes, we aim to clarify the ancestral state of subhaplogroup C1d3 and to better understand the peopling of the region of the Río de la Plata basin, as well as of the builders of the mounds from which the ancient individuals were recovered. The ancient mitogenome, belonging to a female dated to 1,610±46 years before present, was identical to the mitogenome of one of the modern individuals. All individuals share the mutations defining subhaplogroup C1d3. We estimated an age of 8,974 (5,748-12,261) years for the most recent common ancestor of C1d3, in agreement with the initial peopling of the geographic region. No individuals belonging to the defined lineage were found outside of Uruguay, which raises questions regarding the mobility of the prehistoric inhabitants of the country. Moreover, the present study shows the continuity of Native lineages over at least 6,000 years. PMID:26509686

  1. Realizing 1-D conducting channel between oppositely gated regions in bilayer graphene

    NASA Astrophysics Data System (ADS)

    Lee, Janghee; Watanabe, Kenji; Taniguchi, Takashi; Lee, Hu-Jong

    The band gap of bilayer graphene (BLG) can be tuned by applying an external electric field perpendicular to the plane of a BLG sheet. If direction of the electric fields in two adjacent regions in BLG are opposite, one-dimensional (1-D) conducting channel emerges at the boundary between two regions with chiral nature. In this presentation, we introduce a method for fabricating two pairs of split-gates attached to BLG, which is sandwiched between two atomically clean hexagonal boron nitride (h-BN) single crystals and thus allows ballistic transport of carriers at least within the device size. Current-voltage characteristics show a large transport gap, which is comparable to the results obtained from optical measurements and numerical calculations. Opening the band gap in two adjacent regions of the BLG flake by oppositely gated electric fields, we observed metallic behavior in transport characteristics along the boundary between the two regions although the resistance of two gapped regions are a few hundreds of k Ω. These results indicate that a 1-D conducting channel formed between the two regions where the induced band gaps were inverted to each other. The formation of this 1-D conducting channel mimics the topological edge conducting channels emerging at the boundary of a two-dimensional topological insulator and may be utilized for applying BLG to valleytronics

  2. D1/D5 dopamine receptors modulate spatial memory formation.

    PubMed

    da Silva, Weber C N; Köhler, Cristiano C; Radiske, Andressa; Cammarota, Martín

    2012-02-01

    We investigated the effect of the intra-CA1 administration of the D1/D5 receptor antagonist SCH23390 and the D1/D5 receptor agonist SKF38393 on spatial memory in the water maze. When given immediately, but not 3h after training, SCH23390 hindered long-term spatial memory formation without affecting non-spatial memory or the normal functionality of the hippocampus. On the contrary, post-training infusion of SKF38393 enhanced retention and facilitated the spontaneous recovery of the original spatial preference after reversal learning. Our findings demonstrate that hippocampal D1/D5 receptors play an essential role in spatial memory processing.

  3. A 1D (radial) Plasma Jet Propagation Study for the Plasma Liner Experiment (PLX)

    NASA Astrophysics Data System (ADS)

    Thompson, J. R.; Bogatu, I. N.; Galkin, S. A.; Kim, J. S.; Welch, D. R.; Thoma, C.; Golovkin, I.; Macfarlane, J. J.; Case, A.; Messer, S. J.; Witherspoon, F. D.; Cassibry, J. T.; Awe, T. J.; Hsu, S. C.

    2011-10-01

    The Plasma Liner Experiment will explore the formation of imploding spherical ``plasma liners'' that reach peak pressures of 0.1 Mbar upon stagnation. The liners will be formed through the merging of dense, high velocity plasma jets (n ~1017 cm-3, T ~3 eV, v ~50 km/s) in a spherically convergent geometry. The focus of this 1D (radial) study is argon plasma jet evolution during propagation from the rail gun source to the jet merging radius. The study utilizes the Large Scale Plasma (LSP) PIC code with atomic physics included through the use of a non-Local Thermal Equilibrium (NLTE) Equation of State (EOS) table. We will present scenarios for expected 1D (radial) plasma jet evolution, from upon exiting the PLX rail gun to reaching the jet merging radius. The importance of radiation cooling early in the simulation is highlighted. Work supported by US DOE grant DE-FG02-05ER54835.

  4. A human serotonin 1D receptor variant (5HT1D beta) encoded by an intronless gene on chromosome 6.

    PubMed Central

    Demchyshyn, L; Sunahara, R K; Miller, K; Teitler, M; Hoffman, B J; Kennedy, J L; Seeman, P; Van Tol, H H; Niznik, H B

    1992-01-01

    An intronless gene encoding a serotonin receptor (5HT1D beta) has been cloned and functionally expressed in mammalian fibroblast cultures. Based on the deduced amino acid sequence, the gene encodes a 390-amino acid protein displaying considerable homology, within putative transmembrane domains (approximately 75% identity) to the canine and human 5HT1D receptors. Membranes prepared from CHO cells stably expressing the receptor bound [3H]serotonin with high affinity (Kd 4 nM) and displayed a pharmacological profile consistent, but not identical, with that of the characterized serotonin 5HT1D receptor. Most notably, metergoline and serotonergic piperazine derivatives, as a group, display 3- to 8-fold lower affinity for the 5HT1D beta receptor than for the 5HT1D receptor, whereas both receptors display similar affinities for tryptamine derivatives, including the antimigraine drug sumatriptan. Northern blot analysis revealed an mRNA of approximately 5.5 kilobases expressed in human and monkey frontal cortex, medulla, striatum, hippocampus and amygdala but not in cerebellum, olfactory tubercle, and pituitary. The 5HT1D beta gene maps to human chromosome 6. The existence of multiple neuronal 5HT1D-like receptors may help account for some of the complexities associated with [3H]serotonin binding patterns in native membranes. Images PMID:1351684

  5. Subsurface Flow and Contaminant Transport Documentation and User's Guide

    SciTech Connect

    Aleman, S.E.

    1999-07-28

    This report documents a finite element code designed to model subsurface flow and contaminant transport, named FACT. FACT is a transient three-dimensional, finite element code designed to simulate isothermal groundwater flow, moisture movement, and solute transport in variably saturated and fully saturated subsurface porous media. The code is designed specifically to handle complex multi-layer and/or heterogeneous aquifer systems in an efficient manner and accommodates a wide range of boundary conditions. Additionally, 1-D and 2-D (in Cartesian coordinates) problems are handled in FACT by simply limiting the number of elements in a particular direction(s) to one. The governing equations in FACT are formulated only in Cartesian coordinates.

  6. 60. BOILER CHAMBER No. 1, D LOOP STEAM GENERATOR AND ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    60. BOILER CHAMBER No. 1, D LOOP STEAM GENERATOR AND MAIN COOLANT PUMP LOOKING NORTHEAST (LOCATION OOO) - Shippingport Atomic Power Station, On Ohio River, 25 miles Northwest of Pittsburgh, Shippingport, Beaver County, PA

  7. Severe Hypertriglyceridemia in Glut1D on Ketogenic Diet.

    PubMed

    Klepper, Joerg; Leiendecker, Baerbel; Heussinger, Nicole; Lausch, Ekkehart; Bosch, Friedrich

    2016-04-01

    High-fat ketogenic diets are the only treatment available for Glut1 deficiency (Glut1D). Here, we describe an 8-year-old girl with classical Glut1D responsive to a 3:1 ketogenic diet and ethosuximide. After 3 years on the diet a gradual increase of blood lipids was followed by rapid, severe asymptomatic hypertriglyceridemia (1,910 mg/dL). Serum lipid apheresis was required to determine liver, renal, and pancreatic function. A combination of medium chain triglyceride-oil and a reduction of the ketogenic diet to 1:1 ratio normalized triglyceride levels within days but triggered severe myoclonic seizures requiring comedication with sultiam. Severe hypertriglyceridemia in children with Glut1D on ketogenic diets may be underdiagnosed and harmful. In contrast to congenital hypertriglyceridemias, children with Glut1D may be treated effectively by dietary adjustments alone. PMID:26902182

  8. 1D Nanostructures: Controlled Fabrication and Energy Applications

    SciTech Connect

    Hu, Michael Z.

    2013-01-01

    Jian Wei, Xuchun Song, Chunli Yang, and Michael Z. Hu, 1D Nanostructures: Controlled Fabrication and Energy Applications, Journal of Nanomaterials, published special issue (http://www.hindawi.com/journals/jnm/si/197254/) (2013).

  9. GRASP (GRound-Water Adjunct Sensitivity Program): A computer code to perform post-SWENT (simulator for water, energy, and nuclide transport) adjoint sensitivity analysis of steady-state ground-water flow: Technical report

    SciTech Connect

    Wilson, J.L.; RamaRao, B.S.; McNeish, J.A.

    1986-11-01

    GRASP (GRound-Water Adjunct Senstivity Program) computes measures of the behavior of a ground-water system and the system's performance for waste isolation, and estimates the sensitivities of these measures to system parameters. The computed measures are referred to as ''performance measures'' and include weighted squared deviations of computed and observed pressures or heads, local Darcy velocity components and magnitudes, boundary fluxes, and travel distance and time along travel paths. The sensitivities are computed by the adjoint method and are exact derivatives of the performance measures with respect to the parameters for the modeled system, taken about the assumed parameter values. GRASP presumes steady-state, saturated grondwater flow, and post-processes the results of a multidimensional (1-D, 2-D, 3-D) finite-difference flow code. This document describes the mathematical basis for the model, the algorithms and solution techniques used, and the computer code design. The implementation of GRASP is verified with simple one- and two-dimensional flow problems, for which analytical expressions of performance measures and sensitivities are derived. The linkage between GRASP and multidimensional finite-difference flow codes is described. This document also contains a detailed user's manual. The use of GRASP to evaluate nuclear waste disposal issues has been emphasized throughout the report. The performance measures and their sensitivities can be employed to assist in directing data collection programs, expedite model calibration, and objectively determine the sensitivity of projected system performance to parameters.

  10. TBC1D24 genotype–phenotype correlation

    PubMed Central

    Balestrini, Simona; Milh, Mathieu; Castiglioni, Claudia; Lüthy, Kevin; Finelli, Mattea J.; Verstreken, Patrik; Cardon, Aaron; Stražišar, Barbara Gnidovec; Holder, J. Lloyd; Lesca, Gaetan; Mancardi, Maria M.; Poulat, Anne L.; Repetto, Gabriela M.; Banka, Siddharth; Bilo, Leonilda; Birkeland, Laura E.; Bosch, Friedrich; Brockmann, Knut; Cross, J. Helen; Doummar, Diane; Félix, Temis M.; Giuliano, Fabienne; Hori, Mutsuki; Hüning, Irina; Kayserili, Hulia; Kini, Usha; Lees, Melissa M.; Meenakshi, Girish; Mewasingh, Leena; Pagnamenta, Alistair T.; Peluso, Silvio; Mey, Antje; Rice, Gregory M.; Rosenfeld, Jill A.; Taylor, Jenny C.; Troester, Matthew M.; Stanley, Christine M.; Ville, Dorothee; Walkiewicz, Magdalena; Falace, Antonio; Fassio, Anna; Lemke, Johannes R.; Biskup, Saskia; Tardif, Jessica; Ajeawung, Norbert F.; Tolun, Aslihan; Corbett, Mark; Gecz, Jozef; Afawi, Zaid; Howell, Katherine B.; Oliver, Karen L.; Berkovic, Samuel F.; Scheffer, Ingrid E.; de Falco, Fabrizio A.; Oliver, Peter L.; Striano, Pasquale; Zara, Federico

    2016-01-01

    Objective: To evaluate the phenotypic spectrum associated with mutations in TBC1D24. Methods: We acquired new clinical, EEG, and neuroimaging data of 11 previously unreported and 37 published patients. TBC1D24 mutations, identified through various sequencing methods, can be found online (http://lovd.nl/TBC1D24). Results: Forty-eight patients were included (28 men, 20 women, average age 21 years) from 30 independent families. Eighteen patients (38%) had myoclonic epilepsies. The other patients carried diagnoses of focal (25%), multifocal (2%), generalized (4%), and unclassified epilepsy (6%), and early-onset epileptic encephalopathy (25%). Most patients had drug-resistant epilepsy. We detail EEG, neuroimaging, developmental, and cognitive features, treatment responsiveness, and physical examination. In silico evaluation revealed 7 different highly conserved motifs, with the most common pathogenic mutation located in the first. Neuronal outgrowth assays showed that some TBC1D24 mutations, associated with the most severe TBC1D24-associated disorders, are not necessarily the most disruptive to this gene function. Conclusions: TBC1D24-related epilepsy syndromes show marked phenotypic pleiotropy, with multisystem involvement and severity spectrum ranging from isolated deafness (not studied here), benign myoclonic epilepsy restricted to childhood with complete seizure control and normal intellect, to early-onset epileptic encephalopathy with severe developmental delay and early death. There is no distinct correlation with mutation type or location yet, but patterns are emerging. Given the phenotypic breadth observed, TBC1D24 mutation screening is indicated in a wide variety of epilepsies. A TBC1D24 consortium was formed to develop further research on this gene and its associated phenotypes. PMID:27281533

  11. Zero finite-temperature charge stiffness within the half-filled 1D Hubbard model

    SciTech Connect

    Carmelo, J.M.P.; Gu, Shi-Jian; Sacramento, P.D.

    2013-12-15

    Even though the one-dimensional (1D) Hubbard model is solvable by the Bethe ansatz, at half-filling its finite-temperature T>0 transport properties remain poorly understood. In this paper we combine that solution with symmetry to show that within that prominent T=0 1D insulator the charge stiffness D(T) vanishes for T>0 and finite values of the on-site repulsion U in the thermodynamic limit. This result is exact and clarifies a long-standing open problem. It rules out that at half-filling the model is an ideal conductor in the thermodynamic limit. Whether at finite T and U>0 it is an ideal insulator or a normal resistor remains an open question. That at half-filling the charge stiffness is finite at U=0 and vanishes for U>0 is found to result from a general transition from a conductor to an insulator or resistor occurring at U=U{sub c}=0 for all finite temperatures T>0. (At T=0 such a transition is the quantum metal to Mott–Hubbard-insulator transition.) The interplay of the η-spin SU(2) symmetry with the hidden U(1) symmetry beyond SO(4) is found to play a central role in the unusual finite-temperature charge transport properties of the 1D half-filled Hubbard model. -- Highlights: •The charge stiffness of the half-filled 1D Hubbard model is evaluated. •Its value is controlled by the model symmetry operator algebras. •We find that there is no charge ballistic transport at finite temperatures T>0. •The hidden U(1) symmetry controls the U=0 phase transition for T>0.

  12. ABSTRACTION OF INFORMATION FROM 2- AND 3-DIMENSIONAL PORFLOW MODELS INTO A 1-D GOLDSIM MODEL - 11404

    SciTech Connect

    Taylor, G.; Hiergesell, R.

    2010-11-16

    The Savannah River National Laboratory has developed a 'hybrid' approach to Performance Assessment modeling which has been used for a number of Performance Assessments. This hybrid approach uses a multi-dimensional modeling platform (PorFlow) to develop deterministic flow fields and perform contaminant transport. The GoldSim modeling platform is used to develop the Sensitivity and Uncertainty analyses. Because these codes are performing complementary tasks, it is incumbent upon them that for the deterministic cases they produce very similar results. This paper discusses two very different waste forms, one with no engineered barriers and one with engineered barriers, each of which present different challenges to the abstraction of data. The hybrid approach to Performance Assessment modeling used at the SRNL uses a 2-D unsaturated zone (UZ) and a 3-D saturated zone (SZ) model in the PorFlow modeling platform. The UZ model consists of the waste zone and the unsaturated zoned between the waste zone and the water table. The SZ model consists of source cells beneath the waste form to the points of interest. Both models contain 'buffer' cells so that modeling domain boundaries do not adversely affect the calculation. The information pipeline between the two models is the contaminant flux. The domain contaminant flux, typically in units of moles (or Curies) per year from the UZ model is used as a boundary condition for the source cells in the SZ. The GoldSim modeling component of the hybrid approach is an integrated UZ-SZ model. The model is a 1-D representation of the SZ, typically 1-D in the UZ, but as discussed below, depending on the waste form being analyzed may contain pseudo-2-D elements. A waste form at the Savannah River Site (SRS) which has no engineered barriers is commonly referred to as a slit trench. A slit trench, as its name implies, is an unlined trench, typically 6 m deep, 6 m wide, and 200 m long. Low level waste consisting of soil, debris, rubble, wood

  13. Inner Radiation Belt Representation of the Energetic Electron Environment: Model and Data Synthesis Using the Salammbo Radiation Belt Transport Code and Los Alamos Geosynchronous and GPS Energetic Particle Data

    NASA Technical Reports Server (NTRS)

    Friedel, R. H. W.; Bourdarie, S.; Fennell, J.; Kanekal, S.; Cayton, T. E.

    2004-01-01

    The highly energetic electron environment in the inner magnetosphere (GEO inward) has received a lot of research attention in resent years, as the dynamics of relativistic electron acceleration and transport are not yet fully understood. These electrons can cause deep dielectric charging in any space hardware in the MEO to GEO region. We use a new and novel approach to obtain a global representation of the inner magnetospheric energetic electron environment, which can reproduce the absolute environment (flux) for any spacecraft orbit in that region to within a factor of 2 for the energy range of 100 KeV to 5 MeV electrons, for any levels of magnetospheric activity. We combine the extensive set of inner magnetospheric energetic electron observations available at Los Alamos with the physics based Salammbo transport code, using the data assimilation technique of "nudging". This in effect input in-situ data into the code and allows the diffusion mechanisms in the code to interpolate the data into regions and times of no data availability. We present here details of the methods used, both in the data assimilation process and in the necessary inter-calibration of the input data used. We will present sample runs of the model/data code and compare the results to test spacecraft data not used in the data assimilation process.

  14. Flow and transport simulations using T2CG1, a package of conjugate gradient solvers for the TOUGH2 family of codes

    SciTech Connect

    Moridis, G.; Pruess, K.

    1995-04-01

    This report discusses the details of modifications made to the TOUGH2 family of codes to complement its direct solver which significantly increases the size of problems solved by the TOUGH2 code. With this modification, the TOUGH2 system is being tested in multiphase, multicomponent fluid and heat flow problems related to vadose zone hydrology, nuclear waste disposal, and environmental remediation.

  15. Rab GAPs AS160 and Tbc1d1 play nonredundant roles in the regulation of glucose and energy homeostasis in mice.

    PubMed

    Hargett, Stefan R; Walker, Natalie N; Keller, Susanna R

    2016-02-15

    The related Rab GTPase-activating proteins (Rab GAPs) AS160 and Tbc1d1 regulate the trafficking of the glucose transporter GLUT4 that controls glucose uptake in muscle and fat cells and glucose homeostasis. AS160- and Tbc1d1-deficient mice exhibit different adipocyte- and skeletal muscle-specific defects in glucose uptake, GLUT4 expression and trafficking, and glucose homeostasis. A recent study analyzed male mice with simultaneous deletion of AS160 and Tbc1d1 (AS160(-/-)/Tbc1d1(-/-) mice). Herein, we describe abnormalities in male and female AS160(-/-)/Tbc1d1(-/-) mice on another strain background. We confirm the earlier observation that GLUT4 expression and glucose uptake defects of single-knockout mice join in AS160(-/-)/Tbc1d1(-/-) mice to affect all skeletal muscle and adipose tissues. In large mixed fiber-type skeletal muscles, changes in relative basal GLUT4 plasma membrane association in AS160(-/-) and Tbc1d1(-/-) mice also combine in AS160(-/-)/Tbc1d1(-/-) mice. However, we found different glucose uptake abnormalities in isolated skeletal muscles and adipocytes than reported previously, resulting in different interpretations of how AS160 and Tbc1d1 regulate GLUT4 translocation to the cell surface. In support of a larger role for AS160 in glucose homeostasis, in contrast with the previous study, we find similarly impaired glucose and insulin tolerance in AS160(-/-)/Tbc1d1(-/-) and AS160(-/-) mice. However, in vivo glucose uptake abnormalities in AS160(-/-)/Tbc1d1(-/-) skeletal muscles differ from those observed previously in AS160(-/-) mice, indicating additional defects due to Tbc1d1 deletion. Similar to AS160- and Tbc1d1-deficient mice, AS160(-/-)/Tbc1d1(-/-) mice show sex-specific abnormalities in glucose and energy homeostasis. In conclusion, our study supports nonredundant functions for AS160 and Tbc1d1. PMID:26625902

  16. Rab GAPs AS160 and Tbc1d1 play nonredundant roles in the regulation of glucose and energy homeostasis in mice.

    PubMed

    Hargett, Stefan R; Walker, Natalie N; Keller, Susanna R

    2016-02-15

    The related Rab GTPase-activating proteins (Rab GAPs) AS160 and Tbc1d1 regulate the trafficking of the glucose transporter GLUT4 that controls glucose uptake in muscle and fat cells and glucose homeostasis. AS160- and Tbc1d1-deficient mice exhibit different adipocyte- and skeletal muscle-specific defects in glucose uptake, GLUT4 expression and trafficking, and glucose homeostasis. A recent study analyzed male mice with simultaneous deletion of AS160 and Tbc1d1 (AS160(-/-)/Tbc1d1(-/-) mice). Herein, we describe abnormalities in male and female AS160(-/-)/Tbc1d1(-/-) mice on another strain background. We confirm the earlier observation that GLUT4 expression and glucose uptake defects of single-knockout mice join in AS160(-/-)/Tbc1d1(-/-) mice to affect all skeletal muscle and adipose tissues. In large mixed fiber-type skeletal muscles, changes in relative basal GLUT4 plasma membrane association in AS160(-/-) and Tbc1d1(-/-) mice also combine in AS160(-/-)/Tbc1d1(-/-) mice. However, we found different glucose uptake abnormalities in isolated skeletal muscles and adipocytes than reported previously, resulting in different interpretations of how AS160 and Tbc1d1 regulate GLUT4 translocation to the cell surface. In support of a larger role for AS160 in glucose homeostasis, in contrast with the previous study, we find similarly impaired glucose and insulin tolerance in AS160(-/-)/Tbc1d1(-/-) and AS160(-/-) mice. However, in vivo glucose uptake abnormalities in AS160(-/-)/Tbc1d1(-/-) skeletal muscles differ from those observed previously in AS160(-/-) mice, indicating additional defects due to Tbc1d1 deletion. Similar to AS160- and Tbc1d1-deficient mice, AS160(-/-)/Tbc1d1(-/-) mice show sex-specific abnormalities in glucose and energy homeostasis. In conclusion, our study supports nonredundant functions for AS160 and Tbc1d1.

  17. SEAWAT-based simulation of axisymmetric heat transport.

    PubMed

    Vandenbohede, Alexander; Louwyck, Andy; Vlamynck, Nele

    2014-01-01

    Simulation of heat transport has its applications in geothermal exploitation of aquifers and the analysis of temperature dependent chemical reactions. Under homogeneous conditions and in the absence of a regional hydraulic gradient, groundwater flow and heat transport from or to a well exhibit radial symmetry, and governing equations are reduced by one dimension (1D) which increases computational efficiency importantly. Solute transport codes can simulate heat transport and input parameters may be modified such that the Cartesian geometry can handle radial flow. In this article, SEAWAT is evaluated as simulator for heat transport under radial flow conditions. The 1971, 1D analytical solution of Gelhar and Collins is used to compare axisymmetric transport with retardation (i.e., as a result of thermal equilibrium between fluid and solid) and a large diffusion (conduction). It is shown that an axisymmetric simulation compares well with a fully three dimensional (3D) simulation of an aquifer thermal energy storage systems. The influence of grid discretization, solver parameters, and advection solution is illustrated. Because of the high diffusion to simulate conduction, convergence criterion for heat transport must be set much smaller (10(-10) ) than for solute transport (10(-6) ). Grid discretization should be considered carefully, in particular the subdivision of the screen interval. On the other hand, different methods to calculate the pumping or injection rate distribution over different nodes of a multilayer well lead to small differences only.

  18. SEAWAT-based simulation of axisymmetric heat transport.

    PubMed

    Vandenbohede, Alexander; Louwyck, Andy; Vlamynck, Nele

    2014-01-01

    Simulation of heat transport has its applications in geothermal exploitation of aquifers and the analysis of temperature dependent chemical reactions. Under homogeneous conditions and in the absence of a regional hydraulic gradient, groundwater flow and heat transport from or to a well exhibit radial symmetry, and governing equations are reduced by one dimension (1D) which increases computational efficiency importantly. Solute transport codes can simulate heat transport and input parameters may be modified such that the Cartesian geometry can handle radial flow. In this article, SEAWAT is evaluated as simulator for heat transport under radial flow conditions. The 1971, 1D analytical solution of Gelhar and Collins is used to compare axisymmetric transport with retardation (i.e., as a result of thermal equilibrium between fluid and solid) and a large diffusion (conduction). It is shown that an axisymmetric simulation compares well with a fully three dimensional (3D) simulation of an aquifer thermal energy storage systems. The influence of grid discretization, solver parameters, and advection solution is illustrated. Because of the high diffusion to simulate conduction, convergence criterion for heat transport must be set much smaller (10(-10) ) than for solute transport (10(-6) ). Grid discretization should be considered carefully, in particular the subdivision of the screen interval. On the other hand, different methods to calculate the pumping or injection rate distribution over different nodes of a multilayer well lead to small differences only. PMID:24571415

  19. Simulation of unsteady state performance of a secondary air system by the 1D-3D-Structure coupled method

    NASA Astrophysics Data System (ADS)

    Wu, Hong; Li, Peng; Li, Yulong

    2016-02-01

    This paper describes the calculation method for unsteady state conditions in the secondary air systems in gas turbines. The 1D-3D-Structure coupled method was applied. A 1D code was used to model the standard components that have typical geometric characteristics. Their flow and heat transfer were described by empirical correlations based on experimental data or CFD calculations. A 3D code was used to model the non-standard components that cannot be described by typical geometric languages, while a finite element analysis was carried out to compute the structural deformation and heat conduction at certain important positions. These codes were coupled through their interfaces. Thus, the changes in heat transfer and structure and their interactions caused by exterior disturbances can be reflected. The results of the coupling method in an unsteady state showed an apparent deviation from the existing data, while the results in the steady state were highly consistent with the existing data. The difference in the results in the unsteady state was caused primarily by structural deformation that cannot be predicted by the 1D method. Thus, in order to obtain the unsteady state performance of a secondary air system more accurately and efficiently, the 1D-3D-Structure coupled method should be used.

  20. Significant enhancement of power conversion efficiency for dye sensitized solar cell using 1D/3D network nanostructures as photoanodes.

    PubMed

    Wang, Hao; Wang, Baoyuan; Yu, Jichao; Hu, Yunxia; Xia, Chen; Zhang, Jun; Liu, Rong

    2015-03-23

    The single-crystalline TiO2 nanorod arrays with rutile phase have attracted much attention in the dye sensitized solar cells (DSSCs) applications because of their superior chemical stability, better electron transport properties, higher refractive index and low production cost. However, it suffers from a low surface area as compared with TiO2 nanoparticle films. In order to enlarge the surface area of TiO2 nanorod arrays, the 1D nanorods/3D nanotubes sample was synthesized using a facile two-step hydrothermal process involving hydrothermal growth 1D/3D nanorods and followed by post-etching treatment. In such bi-layer structure, the oriented TiO2 nanorods layer could provide direct pathway for fast electron transportation, and the 3D nanotubes layer offers a higher surface area for dye loading, therefore, the 1D nanorods/3D nanotubes photoanode exhibited faster electron transport and higher surface area than either 1D or 3D nanostructures alone, and an highest efficiency of 7.68% was achieved for the DSSCs based on 1D nanorods/3D nanotubes photoanode with further TiCl4 treatment.

  1. Rare coding variants of the adenosine A3 receptor are increased in autism: on the trail of the serotonin transporter regulome

    PubMed Central

    2013-01-01

    Background Rare genetic variation is an important class of autism spectrum disorder (ASD) risk factors and can implicate biological networks for investigation. Altered serotonin (5-HT) signaling has been implicated in ASD, and we and others have discovered multiple, rare, ASD-associated variants in the 5-HT transporter (SERT) gene leading to elevated 5-HT re-uptake and perturbed regulation. We hypothesized that loci encoding SERT regulators harbor variants that impact SERT function and/or regulation and therefore could contribute to ASD risk. The adenosine A3 receptor (A3AR) regulates SERT via protein kinase G (PKG) and other signaling pathways leading to enhanced SERT surface expression and catalytic activity. Methods To test our hypothesis, we asked whether rare variants in the A3AR gene (ADORA3) were increased in ASD cases vs. controls. Discovery sequencing in a case-control sample and subsequent analysis of comparison exome sequence data were conducted. We evaluated the functional impact of two variants from the discovery sample on A3AR signaling and SERT activity. Results Sequencing discovery showed an increase of rare coding variants in cases vs. controls (P=0.013). While comparison exome sequence data did not show a significant enrichment (P=0.071), combined analysis strengthened evidence for association (P=0.0025). Two variants discovered in ASD cases (Leu90Val and Val171Ile) lie in or near the ligand-binding pocket, and Leu90Val was enriched individually in cases (P=0.040). In vitro analysis of cells expressing Val90-A3AR revealed elevated basal cGMP levels compared with the wildtype receptor. Additionally, a specific A3AR agonist increased cGMP levels across the full time course studied in Val90-A3AR cells, compared to wildtype receptor. In Val90-A3AR/SERT co-transfections, agonist stimulation elevated SERT activity over the wildtype receptor with delayed 5-HT uptake activity recovery. In contrast, Ile171-A3AR was unable to support agonist stimulation of

  2. Synthesis, characterization, and physical properties of 1D nanostructures

    NASA Astrophysics Data System (ADS)

    Marley, Peter Mchael

    The roster of materials exhibiting metal---insulator transitions with sharply discontinuous switching of electrical conductivity close to room temperature remains rather sparse despite the fundamental interest in the electronic instabilities manifested in such materials and the plethora of potential technological applications, ranging from frequency-agile metamaterials to electrochromic coatings and Mott field-effect transistors. Vanadium oxide bronzes with the general formula MxV2O 5, provide a wealth of compositions and frameworks where strong electron correlation can be systematically (albeit thus far only empirically) tuned. Charge fluctuations along the quasi-1D frameworks of MxV 2O5 bronzes have evinced much recent interest owing to the manifestation of colossal metal---insulator transitions and superconductivity. We start with a general review on the phase transitions, both electronic and structural, of vanadium oxide bronzes in Chapter 1. In Chapter 2, we demonstrate an unprecedented reversible transformation between double-layered (delta) and tunnel (beta) quasi-1D geometries for nanowires of a divalent vanadium bronze CaxV2O5 (x ˜0.23) upon annealing-induced dehydration and hydrothermally-induced hydration. Such a facile hydration/dehydration-induced interconversion between two prominent quasi-1D structures (accompanied by a change in charge ordering motifs) has not been observed in the bulk and is posited to result from the ease of propagation of crystallographic slip processes across the confined nanowire widths for the delta→beta conversion and the facile diffusion of water molecules within the tunnel geometries for the beta→delta reversion. We demonstrate in Chapter 3 unprecedented pronounced metal-insulator transitions induced by application of a voltage for nanowires of a vanadium oxide bronze with intercalated divalent cations, beta-PbxV 2O5 (x ˜0.33). The induction of the phase transition through application of an electric field at room

  3. Synthesis, characterization, and physical properties of 1D nanostructures

    NASA Astrophysics Data System (ADS)

    Marley, Peter Mchael

    The roster of materials exhibiting metal---insulator transitions with sharply discontinuous switching of electrical conductivity close to room temperature remains rather sparse despite the fundamental interest in the electronic instabilities manifested in such materials and the plethora of potential technological applications, ranging from frequency-agile metamaterials to electrochromic coatings and Mott field-effect transistors. Vanadium oxide bronzes with the general formula MxV2O 5, provide a wealth of compositions and frameworks where strong electron correlation can be systematically (albeit thus far only empirically) tuned. Charge fluctuations along the quasi-1D frameworks of MxV 2O5 bronzes have evinced much recent interest owing to the manifestation of colossal metal---insulator transitions and superconductivity. We start with a general review on the phase transitions, both electronic and structural, of vanadium oxide bronzes in Chapter 1. In Chapter 2, we demonstrate an unprecedented reversible transformation between double-layered (delta) and tunnel (beta) quasi-1D geometries for nanowires of a divalent vanadium bronze CaxV2O5 (x ˜0.23) upon annealing-induced dehydration and hydrothermally-induced hydration. Such a facile hydration/dehydration-induced interconversion between two prominent quasi-1D structures (accompanied by a change in charge ordering motifs) has not been observed in the bulk and is posited to result from the ease of propagation of crystallographic slip processes across the confined nanowire widths for the delta→beta conversion and the facile diffusion of water molecules within the tunnel geometries for the beta→delta reversion. We demonstrate in Chapter 3 unprecedented pronounced metal-insulator transitions induced by application of a voltage for nanowires of a vanadium oxide bronze with intercalated divalent cations, beta-PbxV 2O5 (x ˜0.33). The induction of the phase transition through application of an electric field at room

  4. Comparison of 1D and 2D CSR Models with Application to the FERMI@ELETTRA Bunch Compressors

    SciTech Connect

    Bassi, G.; Ellison, J.A.; Heinemann, K.

    2011-03-28

    We compare our 2D mean field (Vlasov-Maxwell) treatment of coherent synchrotron radiation (CSR) effects with 1D approximations of the CSR force which are commonly implemented in CSR codes. In our model we track particles in 4D phase space and calculate 2D forces [1]. The major cost in our calculation is the computation of the 2D force. To speed up the computation and improve 1D models we also investigate approximations to our exact 2D force. As an application, we present numerical results for the Fermi{at}Elettra first bunch compressor with the configuration described in [1].

  5. Membranes having aligned 1-D nanoparticles in a matrix layer for improved fluid separation

    DOEpatents

    Revanur, Ravindra; Lulevich, Valentin; Roh, Il Juhn; Klare, Jennifer E.; Kim, Sangil; Noy, Aleksandr; Bakajin, Olgica

    2015-12-22

    Membranes for fluid separation are disclosed. These membranes have a matrix layer sandwiched between an active layer and a porous support layer. The matrix layer includes 1-D nanoparticles that are vertically aligned in a porous polymer matrix, and which substantially extend through the matrix layer. The active layer provides species-specific transport, while the support layer provides mechanical support. A matrix layer of this type has favorable surface morphology for forming the active layer. Furthermore, the pores that form in the matrix layer tend to be smaller and more evenly distributed as a result of the presence of aligned 1-D nanoparticles. Improved performance of separation membranes of this type is attributed to these effects.

  6. 1D nanocrystals with precisely controlled dimensions, compositions, and architectures

    NASA Astrophysics Data System (ADS)

    Pang, Xinchang; He, Yanjie; Jung, Jaehan; Lin, Zhiqun

    2016-09-01

    The ability to synthesize a diverse spectrum of one-dimensional (1D) nanocrystals presents an enticing prospect for exploring nanoscale size- and shape-dependent properties. Here we report a general strategy to craft a variety of plain nanorods, core-shell nanorods, and nanotubes with precisely controlled dimensions and compositions by capitalizing on functional bottlebrush-like block copolymers with well-defined structures and narrow molecular weight distributions as nanoreactors. These cylindrical unimolecular nanoreactors enable a high degree of control over the size, shape, architecture, surface chemistry, and properties of 1D nanocrystals. We demonstrate the synthesis of metallic, ferroelectric, upconversion, semiconducting, and thermoelectric 1D nanocrystals, among others, as well as combinations thereof.

  7. The GIRAFFE Archive: 1D and 3D Spectra

    NASA Astrophysics Data System (ADS)

    Royer, F.; Jégouzo, I.; Tajahmady, F.; Normand, J.; Chilingarian, I.

    2013-10-01

    The GIRAFFE Archive (http://giraffe-archive.obspm.fr) contains the reduced spectra observed with the intermediate and high resolution multi-fiber spectrograph installed at VLT/UT2 (ESO). In its multi-object configuration and the different integral field unit configurations, GIRAFFE produces 1D spectra and 3D spectra. We present here the status of the archive and the different functionalities to select and download both 1D and 3D data products, as well as the present content. The two collections are available in the VO: the 1D spectra (summed in the case of integral field observations) and the 3D field observations. These latter products can be explored using the VO Paris Euro3D Client (http://voplus.obspm.fr/ chil/Euro3D).

  8. Pitch-based pattern splitting for 1D layout

    NASA Astrophysics Data System (ADS)

    Nakayama, Ryo; Ishii, Hiroyuki; Mikami, Koji; Tsujita, Koichiro; Yaegashi, Hidetami; Oyama, Kenichi; Smayling, Michael C.; Axelrad, Valery

    2015-07-01

    The pattern splitting algorithm for 1D Gridded-Design-Rules layout (1D layout) for sub-10 nm node logic devices is shown. It is performed with integer linear programming (ILP) based on the conflict graph created from a grid map for each designated pitch. The relation between the number of times for patterning and the minimum pitch is shown systematically with a sample pattern of contact layer for each node. From the result, the number of times for patterning for 1D layout is fewer than that for conventional 2D layout. Moreover, an experimental result including SMO and total integrated process with hole repair technique is presented with the sample pattern of contact layer whose pattern density is relatively high among critical layers (fin, gate, local interconnect, contact, and metal).

  9. 1D nanocrystals with precisely controlled dimensions, compositions, and architectures.

    PubMed

    Pang, Xinchang; He, Yanjie; Jung, Jaehan; Lin, Zhiqun

    2016-09-16

    The ability to synthesize a diverse spectrum of one-dimensional (1D) nanocrystals presents an enticing prospect for exploring nanoscale size- and shape-dependent properties. Here we report a general strategy to craft a variety of plain nanorods, core-shell nanorods, and nanotubes with precisely controlled dimensions and compositions by capitalizing on functional bottlebrush-like block copolymers with well-defined structures and narrow molecular weight distributions as nanoreactors. These cylindrical unimolecular nanoreactors enable a high degree of control over the size, shape, architecture, surface chemistry, and properties of 1D nanocrystals. We demonstrate the synthesis of metallic, ferroelectric, upconversion, semiconducting, and thermoelectric 1D nanocrystals, among others, as well as combinations thereof. PMID:27634531

  10. Flexible Photodetectors Based on 1D Inorganic Nanostructures

    PubMed Central

    Lou, Zheng

    2015-01-01

    Flexible photodetectors with excellent flexibility, high mechanical stability and good detectivity, have attracted great research interest in recent years. 1D inorganic nanostructures provide a number of opportunities and capabilities for use in flexible photodetectors as they have unique geometry, good transparency, outstanding mechanical flexibility, and excellent electronic/optoelectronic properties. This article offers a comprehensive review of several types of flexible photodetectors based on 1D nanostructures from the past ten years, including flexible ultraviolet, visible, and infrared photodetectors. High‐performance organic‐inorganic hybrid photodetectors, as well as devices with 1D nanowire (NW) arrays, are also reviewed. Finally, new concepts of flexible photodetectors including piezophototronic, stretchable and self‐powered photodetectors are examined to showcase the future research in this exciting field. PMID:27774404

  11. Uplink Coding

    NASA Technical Reports Server (NTRS)

    Pollara, Fabrizio; Hamkins, Jon; Dolinar, Sam; Andrews, Ken; Divsalar, Dariush

    2006-01-01

    This viewgraph presentation reviews uplink coding. The purpose and goals of the briefing are (1) Show a plan for using uplink coding and describe benefits (2) Define possible solutions and their applicability to different types of uplink, including emergency uplink (3) Concur with our conclusions so we can embark on a plan to use proposed uplink system (4) Identify the need for the development of appropriate technology and infusion in the DSN (5) Gain advocacy to implement uplink coding in flight projects Action Item EMB04-1-14 -- Show a plan for using uplink coding, including showing where it is useful or not (include discussion of emergency uplink coding).

  12. Analytic 1D pn junction diode photocurrent solutions following ionizing radiation and including time-dependent changes in the carrier lifetime.

    SciTech Connect

    Axness, Carl L.; Keiter, Eric Richard; Kerr, Bert

    2011-04-01

    Circuit simulation tools (e.g., SPICE) have become invaluable in the development and design of electronic circuits in radiation environments. These codes are often employed to study the effect of many thousands of devices under transient current conditions. Device-scale simulation tools (e.g., MEDICI) are commonly used in the design of individual semiconductor components, but require computing resources that make their incorporation into a circuit code impossible for large-scale circuits. Analytic solutions to the ambipolar diffusion equation, an approximation to the carrier transport equations, may be used to characterize the transient currents at nodes within a circuit simulator. We present new transient 1D excess carrier density and photocurrent density solutions to the ambipolar diffusion equation for low-level radiation pulses that take into account a finite device geometry, ohmic fields outside the depleted region, and an arbitrary change in the carrier lifetime due to neutron irradiation or other effects. The solutions are specifically evaluated for the case of an abrupt change in the carrier lifetime during or after, a step, square, or piecewise linear radiation pulse. Noting slow convergence of the raw Fourier series for certain parameter sets, we use closed-form formulas for some of the infinite sums to produce 'partial closed-form' solutions for the above three cases. These 'partial closed-form' solutions converge with only a few tens of terms, which enables efficient large-scale circuit simulations.

  13. GIS-BASED 1-D DIFFUSIVE WAVE OVERLAND FLOW MODEL

    SciTech Connect

    KALYANAPU, ALFRED; MCPHERSON, TIMOTHY N.; BURIAN, STEVEN J.

    2007-01-17

    This paper presents a GIS-based 1-d distributed overland flow model and summarizes an application to simulate a flood event. The model estimates infiltration using the Green-Ampt approach and routes excess rainfall using the 1-d diffusive wave approximation. The model was designed to use readily available topographic, soils, and land use/land cover data and rainfall predictions from a meteorological model. An assessment of model performance was performed for a small catchment and a large watershed, both in urban environments. Simulated runoff hydrographs were compared to observations for a selected set of validation events. Results confirmed the model provides reasonable predictions in a short period of time.

  14. Observation of Dynamical Fermionization in 1D Bose Gases

    NASA Astrophysics Data System (ADS)

    Malvania, Neel; Xia, Lin; Xu, Wei; Wilson, Joshua M.; Zundel, Laura A.; Rigol, Marcos; Weiss, David S.

    2016-05-01

    The momentum distribution of a harmonically trapped 1D Bose gases in the Tonks-Girardeau limit is expected to undergo dynamical fermionization. That is, after the harmonic trap is suddenly turned off, the momentum distribution steadily transforms into that of an ideal Fermi gas in the same initial trap. We measure 1D momentum distributions at variable times after such a quench, and observe the predicted dynamical fermionization. In addition to working in the strong coupling limit, we also perform the experiment with intermediate coupling, where theoretical calculations are more challenging.

  15. Identification of novel isoforms of dairy goat EEF1D and their mRNA expression characterization.

    PubMed

    Zhang, Sihuan; Wu, Xianfeng; Pan, Chuanying; Lei, Chuzhao; Dang, Ruihua; Chen, Hong; Lan, Xianyong

    2016-04-25

    Eukaryotic translation elongation factor 1 delta (EEF1D) gene encodes guanine nucleotide exchange protein eEF1Bδ, which participates in the eukaryotic protein synthesis, and plays important roles in regulating cell cycling and milk production. This study firstly focused on detecting the isoforms of dairy goat EEF1D gene and their mRNA expression characterization. Herein, two novel isoforms, EEF1Da and EEF1Dc, were identified in dairy goat. The entire coding sequences of EEF1Da and EEF1Dc isoforms were 843bp and 267bp in length, respectively. Goat EEF1Da had complete conserved domains of elongation factor 1 (EF1) family, and the evolution of goat EEF1Da isoform was agreed with the evolution of species. Expression pattern analysis of different isoforms revealed relatively ubiquitous expression of EEF1D and EEF1Da. While EEF1Dc only expressed in heart, lung, kidney, adipose and muscle. Combining with the analysis results of cloning, qRT-PCR and bioinformatics, EEF1Da is the major alternative splicing form of EEF1D gene. Interestingly, qRT-PCR result showed that the highest expression of EEF1D was in adipose, which is the major component of mammary. This result was consistent with the early research that EEF1D expressed highly in the mammary, which indicated that EEF1D played a potential key role in regulating adipose development and milk production. All these findings would provide a foundation for the further research of EEF1D gene and development of dairy goat industry. PMID:26794801

  16. Identification of novel isoforms of dairy goat EEF1D and their mRNA expression characterization.

    PubMed

    Zhang, Sihuan; Wu, Xianfeng; Pan, Chuanying; Lei, Chuzhao; Dang, Ruihua; Chen, Hong; Lan, Xianyong

    2016-04-25

    Eukaryotic translation elongation factor 1 delta (EEF1D) gene encodes guanine nucleotide exchange protein eEF1Bδ, which participates in the eukaryotic protein synthesis, and plays important roles in regulating cell cycling and milk production. This study firstly focused on detecting the isoforms of dairy goat EEF1D gene and their mRNA expression characterization. Herein, two novel isoforms, EEF1Da and EEF1Dc, were identified in dairy goat. The entire coding sequences of EEF1Da and EEF1Dc isoforms were 843bp and 267bp in length, respectively. Goat EEF1Da had complete conserved domains of elongation factor 1 (EF1) family, and the evolution of goat EEF1Da isoform was agreed with the evolution of species. Expression pattern analysis of different isoforms revealed relatively ubiquitous expression of EEF1D and EEF1Da. While EEF1Dc only expressed in heart, lung, kidney, adipose and muscle. Combining with the analysis results of cloning, qRT-PCR and bioinformatics, EEF1Da is the major alternative splicing form of EEF1D gene. Interestingly, qRT-PCR result showed that the highest expression of EEF1D was in adipose, which is the major component of mammary. This result was consistent with the early research that EEF1D expressed highly in the mammary, which indicated that EEF1D played a potential key role in regulating adipose development and milk production. All these findings would provide a foundation for the further research of EEF1D gene and development of dairy goat industry.

  17. Calibration of Axisymmetric and Quasi-1D Solvers for High Enthalpy Nozzles

    NASA Technical Reports Server (NTRS)

    Papadopoulos, P. E.; Gochberg, L. A.; Tokarcik-Polsky, S.; Venkatapathy, E.; Deiwert, G. S.; Edwards, Thomas A. (Technical Monitor)

    1994-01-01

    The proposed paper will present a numerical investigation of the flow characteristics and boundary layer development in the nozzles of high enthalpy shock tunnel facilities used for hypersonic propulsion testing. The computed flow will be validated against existing experimental data. Pitot pressure data obtained at the entrance of the test cabin will be used to validate the numerical simulations. It is necessary to accurately model the facility nozzles in order to characterize the test article flow conditions. Initially the axisymmetric nozzle flow will be computed using a Navier Stokes solver for a range of reservoir conditions. The calculated solutions will be compared and calibrated against available experimental data from the DLR HEG piston-driven shock tunnel and the 16-inch shock tunnel at NASA Ames Research Center. The Reynolds number is assumed to be high enough at the throat that the boundary layer flow is assumed turbulent at this point downstream. The real gas affects will be examined. In high Mach number facilities the boundary layer is thick. Attempts will be made to correlate the boundary layer displacement thickness. The displacement thickness correlation will be used to calibrate the quasi-1D codes NENZF and LSENS in order to provide fast and efficient tools of characterizing the facility nozzles. The calibrated quasi-1D codes will be implemented to study the effects of chemistry and the flow condition variations at the test section due to small variations in the driver gas conditions.

  18. 1D-Simulation of Thermonuclear Target Compression and Burning for Laser Facility NIF and LMJ

    NASA Astrophysics Data System (ADS)

    Valiev, R. Zh.; Chizhkov, M. N.; Karlyhanov, N. G.; Lusganova, O. V.; Lykov, V. A.; Netsvetayev, D. S.; Timakova, M. S.

    2006-08-01

    The high-power laser facilities NIF and LMJ with the pulse energy as high as 2 MJ are being created in the USA and France. The basic cryogenic indirect-drive targets for thermonuclear ignition on these facilities are a spherical shell from polystyrene doped with oxygen and bromine. (CH+5%O+0,25%Br), whose inner surface is covered with DT-ice layer. The central region of targets is filled with DT-gas. The targets for NIF and LMJ have different external radii (1,11 and 1,215 mm, correspondingly), masses of DT-fuel (210 и 310 μg), X-ray radiation temperature dependences in time. The thermonuclear yield from the NIF target calculated with LASNEX code is 15 MJ, the yield from the LMJ target calculated with FCI1 code is 25.4 MJ. In RFNC-VNIITF calculations of compression and burning of basic NIF and LMJ targets were performed by using of the 1D ERA code in the spectral diffusion approximation for radiation transfer. We used tabulated opacity calculated by the mean ion model. Thermonuclear yield calculated with ERA code is about 18 MJ for the NIF target and nearly 23 MJ for the LMJ target. Calculated yields are in good agreement with published results. Performed calculations justified the possibility to simulate ICF targets in RFNC-VNIITF. In paper are also presented analysis results of target sensitivity to opacity and X-ray temperature variations.

  19. Non-cooperative Brownian donkeys: A solvable 1D model

    NASA Astrophysics Data System (ADS)

    Jiménez de Cisneros, B.; Reimann, P.; Parrondo, J. M. R.

    2003-12-01

    A paradigmatic 1D model for Brownian motion in a spatially symmetric, periodic system is tackled analytically. Upon application of an external static force F the system's response is an average current which is positive for F < 0 and negative for F > 0 (absolute negative mobility). Under suitable conditions, the system approaches 100% efficiency when working against the external force F.

  20. 1D design style implications for mask making and CEBL

    NASA Astrophysics Data System (ADS)

    Smayling, Michael C.

    2013-09-01

    At advanced nodes, CMOS logic is being designed in a highly regular design style because of the resolution limitations of optical lithography equipment. Logic and memory layouts using 1D Gridded Design Rules (GDR) have been demonstrated to nodes beyond 12nm.[1-4] Smaller nodes will require the same regular layout style but with multiple patterning for critical layers. One of the significant advantages of 1D GDR is the ease of splitting layouts into lines and cuts. A lines and cuts approach has been used to achieve good pattern fidelity and process margin to below 12nm.[4] Line scaling with excellent line-edge roughness (LER) has been demonstrated with self-aligned spacer processing.[5] This change in design style has important implications for mask making: • The complexity of the masks will be greatly reduced from what would be required for 2D designs with very complex OPC or inverse lithography corrections. • The number of masks will initially increase, as for conventional multiple patterning. But in the case of 1D design, there are future options for mask count reduction. • The line masks will remain simple, with little or no OPC, at pitches (1x) above 80nm. This provides an excellent opportunity for continual improvement of line CD and LER. The line pattern will be processed through a self-aligned pitch division sequence to divide pitch by 2 or by 4. • The cut masks can be done with "simple OPC" as demonstrated to beyond 12nm.[6] Multiple simple cut masks may be required at advanced nodes. "Coloring" has been demonstrated to below 12nm for two colors and to 8nm for three colors. • Cut/hole masks will eventually be replaced by e-beam direct write using complementary e-beam lithography (CEBL).[7-11] This transition is gated by the availability of multiple column e-beam systems with throughput adequate for high- volume manufacturing. A brief description of 1D and 2D design styles will be presented, followed by examples of 1D layouts. Mask complexity for 1